Query 004789
Match_columns 730
No_of_seqs 799 out of 3946
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 12:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.2E-72 2.5E-77 553.5 33.8 495 2-705 9-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 3.6E-65 7.8E-70 485.9 28.8 487 13-702 7-508 (508)
3 KOG0271 Notchless-like WD40 re 100.0 9.6E-50 2.1E-54 388.8 28.0 325 327-701 109-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 3.2E-41 6.9E-46 329.3 27.0 285 378-708 112-444 (480)
5 KOG0273 Beta-transducin family 100.0 8.6E-40 1.9E-44 327.6 34.2 318 339-703 185-523 (524)
6 KOG0272 U4/U6 small nuclear ri 100.0 8.4E-41 1.8E-45 330.9 22.0 279 379-702 173-459 (459)
7 KOG0263 Transcription initiati 100.0 5.3E-39 1.1E-43 341.9 34.6 274 380-707 377-653 (707)
8 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-40 1.2E-44 325.1 22.1 269 339-648 182-458 (459)
9 KOG0286 G-protein beta subunit 100.0 4.1E-38 8.8E-43 298.2 32.6 280 379-701 53-343 (343)
10 KOG0279 G protein beta subunit 100.0 6.6E-37 1.4E-41 288.4 32.5 291 379-703 13-313 (315)
11 KOG0291 WD40-repeat-containing 100.0 6.8E-36 1.5E-40 314.5 39.9 344 336-708 149-555 (893)
12 KOG0286 G-protein beta subunit 100.0 8.7E-36 1.9E-40 282.4 31.0 278 338-648 61-343 (343)
13 KOG0318 WD40 repeat stress pro 100.0 7.5E-35 1.6E-39 295.6 37.2 352 338-706 65-563 (603)
14 KOG0265 U5 snRNP-specific prot 100.0 3.6E-35 7.7E-40 279.4 29.1 281 378-701 44-336 (338)
15 KOG0315 G-protein beta subunit 100.0 2E-34 4.3E-39 267.1 28.8 287 343-671 9-302 (311)
16 KOG0279 G protein beta subunit 100.0 2.3E-34 5.1E-39 271.3 29.1 271 343-650 27-313 (315)
17 KOG0291 WD40-repeat-containing 100.0 2.6E-33 5.7E-38 295.1 39.0 346 336-705 100-510 (893)
18 KOG0319 WD40-repeat-containing 100.0 1.2E-34 2.6E-39 305.2 27.5 382 265-705 96-621 (775)
19 KOG0315 G-protein beta subunit 100.0 8.9E-34 1.9E-38 262.8 29.1 269 394-707 11-292 (311)
20 KOG0319 WD40-repeat-containing 100.0 7.6E-34 1.6E-38 299.2 32.1 346 338-707 68-581 (775)
21 KOG0318 WD40 repeat stress pro 100.0 7.3E-33 1.6E-37 281.2 35.9 324 337-703 195-602 (603)
22 KOG0282 mRNA splicing factor [ 100.0 4.5E-35 9.8E-40 295.1 18.8 283 378-701 211-503 (503)
23 KOG0284 Polyadenylation factor 100.0 4E-35 8.7E-40 289.2 17.2 279 381-704 96-381 (464)
24 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.3E-37 258.9 31.3 288 379-703 12-311 (312)
25 KOG0285 Pleiotropic regulator 100.0 9.1E-34 2E-38 274.9 24.8 288 378-705 148-441 (460)
26 KOG0296 Angio-associated migra 100.0 1.4E-32 3.1E-37 268.0 31.9 318 338-703 70-398 (399)
27 KOG0295 WD40 repeat-containing 100.0 2.5E-33 5.4E-38 273.1 25.2 279 379-702 106-405 (406)
28 KOG0284 Polyadenylation factor 100.0 2.7E-34 5.9E-39 283.4 16.7 273 338-650 102-380 (464)
29 KOG0266 WD40 repeat-containing 100.0 2.3E-32 5.1E-37 300.0 33.6 288 380-703 158-454 (456)
30 KOG0273 Beta-transducin family 100.0 3.5E-32 7.6E-37 273.0 29.2 272 336-650 239-523 (524)
31 KOG0316 Conserved WD40 repeat- 100.0 3.7E-32 8.1E-37 250.0 26.2 278 379-703 15-299 (307)
32 KOG0263 Transcription initiati 100.0 2.6E-32 5.6E-37 291.0 26.5 505 13-607 21-650 (707)
33 PLN00181 protein SPA1-RELATED; 100.0 5E-31 1.1E-35 310.9 40.3 317 353-702 457-792 (793)
34 cd00200 WD40 WD40 domain, foun 100.0 1.1E-30 2.3E-35 269.1 36.9 278 379-701 7-289 (289)
35 KOG0295 WD40 repeat-containing 100.0 3.5E-32 7.7E-37 265.1 23.4 272 338-649 114-405 (406)
36 KOG0645 WD40 repeat protein [G 100.0 8.4E-31 1.8E-35 246.2 30.3 272 339-650 21-311 (312)
37 KOG0278 Serine/threonine kinas 100.0 1.4E-32 3E-37 254.8 17.9 294 378-718 11-314 (334)
38 KOG0306 WD40-repeat-containing 100.0 8.5E-31 1.8E-35 276.1 29.8 245 442-705 369-624 (888)
39 KOG0316 Conserved WD40 repeat- 100.0 4.3E-31 9.4E-36 243.0 23.2 245 444-710 15-264 (307)
40 KOG0281 Beta-TrCP (transducin 100.0 7.4E-32 1.6E-36 260.5 16.8 278 380-706 196-480 (499)
41 KOG0276 Vesicle coat complex C 100.0 1.6E-30 3.4E-35 268.8 26.3 275 380-699 12-295 (794)
42 KOG0265 U5 snRNP-specific prot 100.0 3E-30 6.5E-35 245.8 26.1 277 338-648 53-336 (338)
43 KOG0640 mRNA cleavage stimulat 100.0 9.5E-30 2.1E-34 242.7 28.0 301 380-703 111-426 (430)
44 KOG0292 Vesicle coat complex C 100.0 5E-30 1.1E-34 274.0 27.6 287 380-704 8-322 (1202)
45 KOG0266 WD40 repeat-containing 100.0 8.9E-30 1.9E-34 279.7 30.7 279 338-650 165-454 (456)
46 cd00200 WD40 WD40 domain, foun 100.0 1E-28 2.3E-33 254.2 34.8 270 338-648 15-289 (289)
47 KOG0292 Vesicle coat complex C 100.0 3.4E-29 7.3E-34 267.7 31.3 273 338-650 15-321 (1202)
48 KOG0285 Pleiotropic regulator 100.0 1.2E-29 2.7E-34 246.3 24.9 275 337-651 156-440 (460)
49 KOG0283 WD40 repeat-containing 100.0 1.1E-29 2.4E-34 273.3 25.8 268 379-651 265-577 (712)
50 KOG0293 WD40 repeat-containing 100.0 4.4E-28 9.6E-33 239.5 34.1 277 338-651 230-514 (519)
51 KOG1407 WD40 repeat protein [F 100.0 1.3E-28 2.9E-33 230.2 28.0 279 379-703 18-311 (313)
52 PLN00181 protein SPA1-RELATED; 100.0 1.7E-28 3.6E-33 289.6 36.2 280 338-649 489-792 (793)
53 KOG0281 Beta-TrCP (transducin 100.0 1.4E-30 3.1E-35 251.6 15.0 265 342-654 205-481 (499)
54 KOG0296 Angio-associated migra 100.0 1.1E-28 2.3E-33 241.0 27.6 287 380-710 63-363 (399)
55 KOG0772 Uncharacterized conser 100.0 4.2E-29 9.2E-34 253.1 25.0 291 379-702 165-486 (641)
56 KOG0275 Conserved WD40 repeat- 100.0 8.9E-30 1.9E-34 243.9 16.0 280 337-648 218-507 (508)
57 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-27 8.9E-32 227.0 34.2 286 380-706 13-306 (311)
58 KOG1408 WD40 repeat protein [F 100.0 2.1E-28 4.6E-33 255.8 26.8 347 339-704 331-714 (1080)
59 KOG0643 Translation initiation 100.0 2E-28 4.3E-33 229.6 23.2 287 378-703 7-317 (327)
60 KOG0313 Microtubule binding pr 100.0 4.7E-28 1E-32 237.6 26.7 273 380-703 104-418 (423)
61 KOG0288 WD40 repeat protein Ti 100.0 2.2E-29 4.8E-34 249.3 16.9 279 380-701 174-459 (459)
62 KOG0276 Vesicle coat complex C 100.0 1.6E-27 3.5E-32 246.6 30.2 229 338-604 61-296 (794)
63 KOG0973 Histone transcription 100.0 3.4E-28 7.5E-33 268.1 26.5 307 338-706 19-358 (942)
64 KOG0313 Microtubule binding pr 100.0 1.1E-27 2.3E-32 235.1 26.4 270 344-650 115-418 (423)
65 KOG0306 WD40-repeat-containing 100.0 2.3E-27 5.1E-32 250.3 29.2 307 346-704 337-665 (888)
66 KOG0282 mRNA splicing factor [ 100.0 1.6E-28 3.5E-33 247.9 17.1 275 338-648 220-503 (503)
67 KOG0277 Peroxisomal targeting 100.0 8.9E-28 1.9E-32 223.8 19.3 237 445-702 59-308 (311)
68 KOG0274 Cdc4 and related F-box 100.0 1.2E-26 2.6E-31 253.9 31.2 271 343-658 217-490 (537)
69 KOG0294 WD40 repeat-containing 100.0 1.5E-26 3.2E-31 222.0 27.5 276 396-705 4-283 (362)
70 KOG0305 Anaphase promoting com 100.0 6.4E-27 1.4E-31 246.5 26.6 268 343-652 187-463 (484)
71 KOG0274 Cdc4 and related F-box 100.0 1.8E-26 3.9E-31 252.6 30.9 276 380-708 207-487 (537)
72 KOG0283 WD40 repeat-containing 100.0 2.4E-27 5.2E-32 255.5 23.5 241 444-704 265-577 (712)
73 PTZ00421 coronin; Provisional 100.0 5.7E-26 1.2E-30 248.5 34.4 274 380-682 19-313 (493)
74 KOG0308 Conserved WD40 repeat- 100.0 2E-27 4.3E-32 247.4 20.3 328 340-707 33-397 (735)
75 KOG0641 WD40 repeat protein [G 100.0 3.5E-25 7.5E-30 202.6 32.3 304 380-703 31-349 (350)
76 KOG0310 Conserved WD40 repeat- 100.0 1.4E-26 3E-31 234.5 24.8 281 380-705 25-311 (487)
77 KOG0277 Peroxisomal targeting 100.0 8.5E-27 1.8E-31 217.3 20.8 260 353-649 37-308 (311)
78 KOG0640 mRNA cleavage stimulat 100.0 7.7E-27 1.7E-31 222.9 19.9 285 338-650 118-426 (430)
79 KOG0641 WD40 repeat protein [G 99.9 5.1E-25 1.1E-29 201.5 30.4 295 323-650 20-349 (350)
80 KOG0643 Translation initiation 99.9 9.4E-26 2E-30 211.7 26.1 272 338-652 16-319 (327)
81 KOG0278 Serine/threonine kinas 99.9 3.7E-27 8E-32 218.9 16.0 273 339-655 24-302 (334)
82 KOG0772 Uncharacterized conser 99.9 3.3E-26 7.1E-31 232.2 24.2 291 338-649 173-486 (641)
83 PTZ00421 coronin; Provisional 99.9 2.9E-25 6.4E-30 242.9 33.8 287 338-652 26-333 (493)
84 KOG1446 Histone H3 (Lys4) meth 99.9 6.7E-25 1.5E-29 211.8 30.7 245 445-708 13-267 (311)
85 KOG1539 WD repeat protein [Gen 99.9 5.9E-25 1.3E-29 235.0 33.2 335 338-704 208-649 (910)
86 KOG0288 WD40 repeat protein Ti 99.9 7.8E-27 1.7E-31 231.2 17.1 275 338-648 181-459 (459)
87 KOG1408 WD40 repeat protein [F 99.9 2.3E-25 4.9E-30 233.3 28.8 239 457-711 393-679 (1080)
88 KOG0301 Phospholipase A2-activ 99.9 1.2E-25 2.6E-30 236.0 25.8 275 378-705 11-290 (745)
89 KOG1407 WD40 repeat protein [F 99.9 1.6E-25 3.4E-30 209.7 22.5 245 444-712 18-270 (313)
90 KOG0299 U3 snoRNP-associated p 99.9 2.9E-25 6.2E-30 223.3 25.6 289 380-700 141-453 (479)
91 KOG0305 Anaphase promoting com 99.9 2.2E-25 4.8E-30 234.9 25.5 272 385-705 181-463 (484)
92 KOG0268 Sof1-like rRNA process 99.9 2E-26 4.4E-31 224.6 15.8 280 378-706 63-348 (433)
93 PTZ00420 coronin; Provisional 99.9 6.5E-24 1.4E-28 233.2 36.0 221 444-683 72-317 (568)
94 KOG0289 mRNA splicing factor [ 99.9 1E-24 2.3E-29 217.3 26.2 270 340-649 227-505 (506)
95 KOG0289 mRNA splicing factor [ 99.9 3.3E-24 7.2E-29 213.7 27.3 278 381-702 219-505 (506)
96 PTZ00420 coronin; Provisional 99.9 9.2E-24 2E-28 232.0 33.5 224 462-706 50-296 (568)
97 KOG0268 Sof1-like rRNA process 99.9 1.3E-25 2.8E-30 219.0 16.5 275 339-658 73-353 (433)
98 KOG0300 WD40 repeat-containing 99.9 9.5E-25 2.1E-29 209.0 21.8 287 378-705 145-478 (481)
99 KOG2096 WD40 repeat protein [G 99.9 5E-24 1.1E-28 204.6 25.5 294 338-650 92-402 (420)
100 KOG1274 WD40 repeat protein [G 99.9 6.8E-24 1.5E-28 229.6 29.4 283 379-700 11-297 (933)
101 KOG0310 Conserved WD40 repeat- 99.9 5.7E-24 1.2E-28 215.6 26.3 269 339-651 33-310 (487)
102 KOG0647 mRNA export protein (c 99.9 7.3E-24 1.6E-28 202.5 25.5 269 380-691 26-311 (347)
103 KOG2096 WD40 repeat protein [G 99.9 8.5E-24 1.8E-28 203.0 26.0 291 379-705 84-404 (420)
104 KOG0308 Conserved WD40 repeat- 99.9 5.8E-25 1.3E-29 229.1 18.1 285 380-704 20-328 (735)
105 KOG4283 Transcription-coupled 99.9 1.1E-23 2.4E-28 200.1 24.8 300 380-703 42-365 (397)
106 KOG0300 WD40 repeat-containing 99.9 4.2E-24 9.1E-29 204.6 21.9 289 345-652 161-478 (481)
107 KOG1036 Mitotic spindle checkp 99.9 3.6E-23 7.9E-28 198.7 26.3 268 380-693 12-294 (323)
108 KOG0299 U3 snoRNP-associated p 99.9 1.7E-23 3.6E-28 210.7 23.1 274 338-639 148-444 (479)
109 KOG1539 WD repeat protein [Gen 99.9 3.3E-22 7.2E-27 214.1 34.1 329 345-708 173-611 (910)
110 KOG0294 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 194.7 27.9 266 347-652 4-283 (362)
111 KOG0264 Nucleosome remodeling 99.9 1.7E-23 3.6E-28 210.9 22.4 250 380-650 123-404 (422)
112 KOG0639 Transducin-like enhanc 99.9 7.9E-24 1.7E-28 214.0 19.4 273 339-649 426-703 (705)
113 KOG0647 mRNA export protein (c 99.9 9.2E-23 2E-27 195.0 25.3 263 338-638 33-311 (347)
114 KOG0639 Transducin-like enhanc 99.9 1.5E-23 3.3E-28 212.0 20.9 279 380-702 418-703 (705)
115 KOG1063 RNA polymerase II elon 99.9 7.9E-23 1.7E-27 214.8 26.7 343 343-703 205-699 (764)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-21 4.8E-26 202.8 37.9 277 344-659 1-288 (300)
117 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.4E-28 195.5 17.5 244 379-650 9-286 (299)
118 KOG1332 Vesicle coat complex C 99.9 2.2E-23 4.7E-28 193.6 19.4 232 343-606 22-286 (299)
119 KOG0301 Phospholipase A2-activ 99.9 6.3E-23 1.4E-27 215.7 24.6 263 341-651 22-289 (745)
120 KOG2106 Uncharacterized conser 99.9 1.4E-21 2.9E-26 198.4 33.0 317 338-705 160-523 (626)
121 KOG2048 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 205.1 34.4 352 338-705 31-550 (691)
122 KOG2048 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 206.1 32.1 289 380-704 24-320 (691)
123 KOG0321 WD40 repeat-containing 99.9 7.7E-23 1.7E-27 213.0 22.5 294 385-705 53-393 (720)
124 KOG0646 WD40 repeat protein [G 99.9 8.7E-23 1.9E-27 205.9 22.1 246 394-682 51-329 (476)
125 KOG0264 Nucleosome remodeling 99.9 8.3E-23 1.8E-27 205.9 20.9 249 444-704 122-405 (422)
126 KOG2055 WD40 repeat protein [G 99.9 4.4E-22 9.5E-27 200.3 24.9 283 337-650 218-512 (514)
127 KOG0646 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 203.9 21.8 242 456-707 50-311 (476)
128 KOG1273 WD40 repeat protein [G 99.9 4.5E-22 9.8E-27 191.0 23.4 286 384-714 26-332 (405)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.1E-21 2E-25 198.2 35.5 270 394-711 2-287 (300)
130 KOG0973 Histone transcription 99.9 1.8E-22 3.8E-27 223.3 23.3 259 380-707 12-316 (942)
131 KOG1036 Mitotic spindle checkp 99.9 8.1E-22 1.8E-26 189.5 24.2 264 338-640 19-294 (323)
132 KOG2106 Uncharacterized conser 99.9 1E-20 2.2E-25 192.2 33.2 319 338-708 110-482 (626)
133 KOG4283 Transcription-coupled 99.9 1E-21 2.2E-26 186.8 24.2 280 341-650 53-365 (397)
134 KOG2055 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 196.4 24.6 284 380-703 212-512 (514)
135 KOG1063 RNA polymerase II elon 99.9 2.4E-21 5.1E-26 203.8 26.9 335 338-703 322-763 (764)
136 KOG0269 WD40 repeat-containing 99.9 2E-22 4.4E-27 214.2 19.0 282 340-652 47-342 (839)
137 KOG0269 WD40 repeat-containing 99.9 2.4E-22 5.1E-27 213.7 19.1 289 381-705 39-342 (839)
138 KOG1034 Transcriptional repres 99.9 1.6E-21 3.4E-26 188.6 22.5 292 379-703 36-383 (385)
139 KOG2445 Nuclear pore complex c 99.9 1.7E-20 3.6E-25 180.0 28.5 263 378-705 10-320 (361)
140 KOG0267 Microtubule severing p 99.9 3E-23 6.5E-28 218.8 9.9 229 444-694 26-259 (825)
141 KOG1274 WD40 repeat protein [G 99.9 8.5E-21 1.9E-25 205.7 27.7 267 336-647 17-297 (933)
142 KOG4378 Nuclear protein COP1 [ 99.9 6.7E-21 1.4E-25 192.8 22.1 286 349-682 7-303 (673)
143 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.3E-25 190.3 22.9 292 380-704 185-496 (498)
144 KOG0267 Microtubule severing p 99.9 2.2E-22 4.8E-27 212.2 10.1 251 345-642 5-260 (825)
145 KOG0650 WD40 repeat nucleolar 99.9 2.1E-20 4.6E-25 193.4 22.3 279 379-701 398-733 (733)
146 KOG2919 Guanine nucleotide-bin 99.9 4.6E-20 9.9E-25 178.0 21.6 277 384-694 52-361 (406)
147 KOG1273 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 174.7 23.4 278 336-651 27-323 (405)
148 KOG0650 WD40 repeat nucleolar 99.8 1.4E-19 3E-24 187.4 22.8 290 338-647 406-732 (733)
149 KOG1445 Tumor-specific antigen 99.8 1.1E-19 2.3E-24 188.8 20.3 131 378-525 76-212 (1012)
150 KOG0270 WD40 repeat-containing 99.8 3.4E-19 7.3E-24 179.1 23.1 233 456-707 192-453 (463)
151 KOG1009 Chromatin assembly com 99.8 1.1E-18 2.4E-23 173.5 26.2 300 381-707 13-376 (434)
152 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-19 3.8E-24 182.6 20.6 240 446-706 34-283 (673)
153 KOG0270 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 180.9 20.5 252 393-655 192-454 (463)
154 KOG2445 Nuclear pore complex c 99.8 2.6E-18 5.6E-23 165.1 25.2 248 337-605 18-317 (361)
155 KOG0321 WD40 repeat-containing 99.8 3.9E-19 8.4E-24 185.6 21.2 281 343-652 63-393 (720)
156 KOG0649 WD40 repeat protein [G 99.8 6.8E-18 1.5E-22 157.0 26.8 287 382-701 11-314 (325)
157 KOG0307 Vesicle coat complex C 99.8 6E-20 1.3E-24 204.2 15.0 286 336-653 10-330 (1049)
158 KOG0302 Ribosome Assembly prot 99.8 9E-19 1.9E-23 172.4 20.4 244 444-701 149-436 (440)
159 KOG0302 Ribosome Assembly prot 99.8 7.5E-19 1.6E-23 172.9 18.9 254 379-647 149-435 (440)
160 KOG1538 Uncharacterized conser 99.8 1.5E-18 3.2E-23 181.3 20.7 264 338-650 18-293 (1081)
161 KOG1009 Chromatin assembly com 99.8 5.2E-18 1.1E-22 168.8 22.9 294 346-655 28-377 (434)
162 KOG4227 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 164.9 22.6 308 379-714 54-396 (609)
163 KOG4328 WD40 protein [Function 99.8 7.3E-18 1.6E-22 170.0 21.1 249 444-706 184-453 (498)
164 KOG2919 Guanine nucleotide-bin 99.8 3.4E-17 7.5E-22 158.3 24.8 275 338-640 55-360 (406)
165 KOG1538 Uncharacterized conser 99.8 8.2E-18 1.8E-22 175.8 22.1 272 383-705 14-295 (1081)
166 KOG0307 Vesicle coat complex C 99.8 2.6E-18 5.7E-23 191.3 18.2 240 338-609 70-330 (1049)
167 KOG1034 Transcriptional repres 99.8 8.6E-18 1.9E-22 162.9 19.4 275 344-650 55-383 (385)
168 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-15 3.9E-20 164.6 40.6 324 338-711 71-408 (466)
169 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-15 3.4E-20 165.1 39.4 312 341-704 119-443 (466)
170 KOG1963 WD40 repeat protein [G 99.8 3.4E-16 7.3E-21 170.3 32.2 359 338-711 22-501 (792)
171 KOG0649 WD40 repeat protein [G 99.8 1.9E-16 4.2E-21 147.4 25.9 277 338-647 16-313 (325)
172 KOG1188 WD40 repeat protein [G 99.8 7.3E-17 1.6E-21 157.4 20.7 274 394-703 41-346 (376)
173 KOG1334 WD40 repeat protein [G 99.7 1.7E-17 3.6E-22 168.6 14.9 294 378-706 139-469 (559)
174 PRK11028 6-phosphogluconolacto 99.7 3.5E-15 7.6E-20 158.5 32.2 270 348-650 6-304 (330)
175 KOG0303 Actin-binding protein 99.7 1.4E-16 2.9E-21 158.0 19.5 230 378-631 78-320 (472)
176 KOG0303 Actin-binding protein 99.7 1.6E-16 3.5E-21 157.5 18.7 201 444-653 79-297 (472)
177 KOG1517 Guanine nucleotide bin 99.7 7.6E-16 1.6E-20 169.2 25.7 299 335-653 1067-1384(1387)
178 KOG1007 WD repeat protein TSSC 99.7 2.3E-16 4.9E-21 150.4 18.6 247 339-606 70-361 (370)
179 PRK11028 6-phosphogluconolacto 99.7 2E-14 4.3E-19 152.7 34.0 271 397-704 6-305 (330)
180 KOG1007 WD repeat protein TSSC 99.7 2.8E-16 6.1E-21 149.8 17.3 227 464-705 39-291 (370)
181 KOG1445 Tumor-specific antigen 99.7 1.7E-16 3.7E-21 165.2 17.1 246 343-654 590-848 (1012)
182 KOG1240 Protein kinase contain 99.7 1.6E-15 3.4E-20 169.4 25.6 297 379-701 1046-1431(1431)
183 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-16 3.4E-21 164.6 16.5 249 444-711 292-569 (577)
184 KOG1188 WD40 repeat protein [G 99.7 4.4E-16 9.5E-21 152.1 18.6 275 345-650 41-346 (376)
185 KOG1310 WD40 repeat protein [G 99.7 6.6E-16 1.4E-20 158.7 20.7 208 378-607 47-304 (758)
186 KOG1963 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 158.6 30.9 336 338-705 166-540 (792)
187 KOG0642 Cell-cycle nuclear pro 99.7 1.7E-16 3.8E-21 164.2 15.8 257 380-659 293-570 (577)
188 KOG1517 Guanine nucleotide bin 99.7 2.7E-15 5.9E-20 164.9 25.8 294 382-706 1065-1384(1387)
189 KOG0322 G-protein beta subunit 99.7 2.8E-16 6.1E-21 148.1 15.5 265 345-649 26-322 (323)
190 KOG1587 Cytoplasmic dynein int 99.7 3.3E-15 7.1E-20 162.9 26.1 265 354-652 222-518 (555)
191 KOG2110 Uncharacterized conser 99.7 2.8E-14 6E-19 141.1 29.9 236 380-651 4-249 (391)
192 KOG0290 Conserved WD40 repeat- 99.7 1.1E-14 2.4E-19 139.1 25.6 284 381-699 44-361 (364)
193 KOG0644 Uncharacterized conser 99.7 1.4E-16 3.1E-21 170.8 12.5 273 379-706 188-471 (1113)
194 KOG0644 Uncharacterized conser 99.7 6.8E-17 1.5E-21 173.2 8.7 234 444-706 188-429 (1113)
195 KOG0290 Conserved WD40 repeat- 99.7 1.2E-14 2.6E-19 138.9 21.9 271 344-646 59-361 (364)
196 KOG0322 G-protein beta subunit 99.7 8.7E-16 1.9E-20 144.8 13.5 243 444-702 12-322 (323)
197 KOG2110 Uncharacterized conser 99.7 7.3E-14 1.6E-18 138.1 27.2 240 445-706 4-251 (391)
198 KOG4227 WD40 repeat protein [G 99.7 9.6E-15 2.1E-19 144.4 20.1 283 338-650 62-387 (609)
199 KOG1524 WD40 repeat-containing 99.7 2.5E-15 5.4E-20 154.1 16.2 267 380-704 13-287 (737)
200 PRK01742 tolB translocation pr 99.6 2.3E-14 5E-19 157.2 22.4 233 353-682 183-425 (429)
201 KOG1587 Cytoplasmic dynein int 99.6 9.2E-14 2E-18 151.6 25.9 244 445-705 241-518 (555)
202 KOG0771 Prolactin regulatory e 99.6 9.4E-15 2E-19 147.0 15.4 198 489-704 148-355 (398)
203 KOG4497 Uncharacterized conser 99.6 1.3E-13 2.9E-18 133.9 22.5 272 386-705 13-393 (447)
204 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 3.9E-18 142.0 24.4 293 379-712 49-354 (703)
205 KOG1523 Actin-related protein 99.6 1.8E-13 3.9E-18 132.9 22.6 230 380-633 9-262 (361)
206 KOG2321 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 142.6 23.2 270 339-652 58-345 (703)
207 KOG2139 WD40 repeat protein [G 99.6 6E-13 1.3E-17 131.1 25.4 282 381-703 98-431 (445)
208 KOG0771 Prolactin regulatory e 99.6 1.7E-14 3.7E-19 145.2 15.0 196 450-651 148-355 (398)
209 PRK01742 tolB translocation pr 99.6 1.4E-13 3E-18 151.0 23.6 207 464-703 183-401 (429)
210 KOG1524 WD40 repeat-containing 99.6 3.8E-14 8.3E-19 145.6 16.6 203 343-600 74-280 (737)
211 KOG2111 Uncharacterized conser 99.6 5.3E-13 1.1E-17 129.7 23.5 240 448-706 7-259 (346)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 1.8E-13 3.8E-18 141.1 21.0 242 449-706 126-455 (636)
213 KOG1523 Actin-related protein 99.6 1.8E-13 3.9E-18 132.9 19.7 202 445-653 9-239 (361)
214 KOG1240 Protein kinase contain 99.6 7E-13 1.5E-17 148.6 27.0 270 427-708 1032-1339(1431)
215 KOG1272 WD40-repeat-containing 99.6 1.2E-14 2.5E-19 147.3 11.6 278 383-708 131-414 (545)
216 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3E-17 128.5 25.6 287 345-650 111-431 (445)
217 PF02239 Cytochrom_D1: Cytochr 99.6 6.1E-12 1.3E-16 133.8 31.9 316 347-711 9-355 (369)
218 KOG4497 Uncharacterized conser 99.6 3.8E-13 8.2E-18 130.8 20.0 303 339-697 55-426 (447)
219 KOG1334 WD40 repeat protein [G 99.6 4.5E-14 9.8E-19 143.9 14.3 287 338-653 148-469 (559)
220 KOG2111 Uncharacterized conser 99.6 1.3E-11 2.7E-16 120.3 30.1 236 383-652 7-258 (346)
221 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.5E-19 146.3 8.6 268 335-647 132-406 (545)
222 PRK05137 tolB translocation pr 99.5 4.3E-12 9.3E-17 139.8 28.7 215 465-707 182-416 (435)
223 PRK03629 tolB translocation pr 99.5 3.2E-12 7E-17 140.0 27.4 169 488-682 245-427 (429)
224 KOG1310 WD40 repeat protein [G 99.5 2.1E-13 4.5E-18 140.6 15.2 214 444-658 48-311 (758)
225 KOG2315 Predicted translation 99.5 1.3E-11 2.8E-16 128.7 28.1 314 338-705 40-392 (566)
226 PF10282 Lactonase: Lactonase, 99.5 2.5E-10 5.4E-15 121.6 38.6 278 354-657 13-331 (345)
227 PRK05137 tolB translocation pr 99.5 7.9E-12 1.7E-16 137.7 27.7 214 355-654 183-416 (435)
228 PRK04922 tolB translocation pr 99.5 6.1E-12 1.3E-16 138.4 26.4 213 465-705 184-413 (433)
229 KOG3881 Uncharacterized conser 99.5 2.8E-12 6E-17 128.0 20.4 251 380-657 54-327 (412)
230 PRK03629 tolB translocation pr 99.5 1.1E-11 2.4E-16 135.7 27.0 213 465-705 179-408 (429)
231 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-12 4.4E-17 133.4 18.9 163 456-629 185-383 (636)
232 PRK02889 tolB translocation pr 99.5 1.1E-11 2.4E-16 135.8 26.2 210 465-702 176-402 (427)
233 PRK04922 tolB translocation pr 99.5 8.1E-12 1.7E-16 137.4 24.9 232 354-682 184-432 (433)
234 COG2706 3-carboxymuconate cycl 99.5 5.3E-10 1.1E-14 111.6 34.0 279 353-655 15-328 (346)
235 COG5354 Uncharacterized protei 99.5 7.9E-11 1.7E-15 121.4 28.8 324 338-706 38-398 (561)
236 PF02239 Cytochrom_D1: Cytochr 99.4 4.7E-11 1E-15 127.0 27.8 286 338-659 42-356 (369)
237 PF08662 eIF2A: Eukaryotic tra 99.4 6.8E-12 1.5E-16 121.3 18.7 152 530-707 9-182 (194)
238 KOG3881 Uncharacterized conser 99.4 2.1E-11 4.5E-16 121.8 21.5 255 343-631 68-342 (412)
239 KOG1354 Serine/threonine prote 99.4 2.1E-11 4.6E-16 119.5 19.8 284 338-653 31-362 (433)
240 PF08662 eIF2A: Eukaryotic tra 99.4 2.6E-11 5.5E-16 117.3 20.4 153 489-658 9-186 (194)
241 PRK02889 tolB translocation pr 99.4 6.1E-11 1.3E-15 130.0 25.8 212 444-682 193-424 (427)
242 KOG2315 Predicted translation 99.4 9.8E-11 2.1E-15 122.2 24.9 305 274-657 37-396 (566)
243 TIGR02800 propeller_TolB tol-p 99.4 1.6E-10 3.4E-15 127.2 27.8 210 465-702 170-396 (417)
244 KOG2314 Translation initiation 99.4 2.6E-10 5.6E-15 118.5 24.9 334 338-715 216-596 (698)
245 PF10282 Lactonase: Lactonase, 99.4 5.5E-09 1.2E-13 111.3 36.1 241 447-704 37-323 (345)
246 PRK00178 tolB translocation pr 99.3 6.4E-10 1.4E-14 122.6 27.7 213 466-706 180-409 (430)
247 KOG0974 WD-repeat protein WDR6 99.3 5E-11 1.1E-15 132.6 17.4 184 498-705 101-290 (967)
248 KOG2659 LisH motif-containing 99.3 2E-11 4.4E-16 115.4 11.6 162 12-185 25-199 (228)
249 TIGR03300 assembly_YfgL outer 99.3 4.7E-09 1E-13 113.7 30.9 275 392-714 64-349 (377)
250 KOG1354 Serine/threonine prote 99.3 1.3E-10 2.8E-15 114.1 16.1 257 445-706 24-362 (433)
251 PRK04792 tolB translocation pr 99.3 1.7E-09 3.7E-14 119.0 26.1 210 466-703 199-425 (448)
252 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.8E-08 3.9E-13 104.9 31.3 272 354-659 27-339 (352)
253 TIGR03300 assembly_YfgL outer 99.2 2.2E-08 4.7E-13 108.5 33.7 294 343-700 64-376 (377)
254 TIGR02800 propeller_TolB tol-p 99.2 3.3E-09 7.1E-14 116.7 26.7 197 445-658 188-404 (417)
255 KOG4547 WD40 repeat-containing 99.2 8E-10 1.7E-14 116.4 20.3 198 390-607 2-221 (541)
256 KOG2041 WD40 repeat protein [G 99.2 1.3E-09 2.9E-14 116.0 21.7 301 380-710 13-343 (1189)
257 PRK01029 tolB translocation pr 99.2 4.6E-09 1E-13 114.8 26.9 221 466-708 166-408 (428)
258 KOG1409 Uncharacterized conser 99.2 1E-09 2.2E-14 108.1 19.1 237 338-608 30-272 (404)
259 KOG0974 WD-repeat protein WDR6 99.2 3E-10 6.6E-15 126.5 17.5 184 456-651 99-289 (967)
260 PRK04792 tolB translocation pr 99.2 4.6E-09 1E-13 115.7 26.3 211 445-682 216-446 (448)
261 KOG0280 Uncharacterized conser 99.2 3.2E-09 6.9E-14 102.6 21.0 245 445-706 68-336 (339)
262 PRK00178 tolB translocation pr 99.2 5.6E-09 1.2E-13 115.2 26.1 211 445-682 197-427 (430)
263 PRK01029 tolB translocation pr 99.2 7.7E-09 1.7E-13 113.0 26.8 216 380-632 183-426 (428)
264 COG4946 Uncharacterized protei 99.2 2.6E-08 5.7E-13 101.9 28.0 227 388-639 273-507 (668)
265 COG2706 3-carboxymuconate cycl 99.2 1.8E-07 4E-12 93.7 32.2 247 444-706 37-324 (346)
266 KOG0280 Uncharacterized conser 99.2 6E-09 1.3E-13 100.7 20.7 270 353-652 45-335 (339)
267 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.8E-07 3.9E-12 97.5 32.5 226 464-708 76-335 (352)
268 KOG4547 WD40 repeat-containing 99.1 1.5E-08 3.2E-13 107.0 24.5 190 341-557 2-221 (541)
269 COG4946 Uncharacterized protei 99.1 3.9E-08 8.4E-13 100.7 25.2 193 339-559 273-480 (668)
270 PF04762 IKI3: IKI3 family; I 99.1 2.4E-07 5.1E-12 109.5 33.4 333 338-705 81-458 (928)
271 COG5354 Uncharacterized protei 99.0 1.5E-07 3.3E-12 97.6 26.4 271 381-705 32-350 (561)
272 PLN02919 haloacid dehalogenase 99.0 2.5E-07 5.3E-12 111.4 32.4 255 450-707 571-892 (1057)
273 KOG2041 WD40 repeat protein [G 99.0 6.7E-08 1.5E-12 103.4 24.1 277 336-651 18-338 (1189)
274 PRK11138 outer membrane biogen 99.0 4.6E-07 9.9E-12 98.7 31.8 303 343-702 68-393 (394)
275 PRK04043 tolB translocation pr 99.0 2E-07 4.4E-12 101.2 28.7 210 465-705 169-402 (419)
276 KOG1064 RAVE (regulator of V-A 99.0 1.6E-09 3.5E-14 126.0 12.7 178 339-558 2215-2400(2439)
277 KOG0309 Conserved WD40 repeat- 99.0 2.4E-09 5.2E-14 114.7 12.3 282 381-705 24-341 (1081)
278 KOG1064 RAVE (regulator of V-A 99.0 1.8E-09 3.9E-14 125.7 12.2 193 444-659 2206-2407(2439)
279 KOG1409 Uncharacterized conser 99.0 1.9E-08 4.2E-13 99.2 17.6 239 444-706 22-273 (404)
280 PF13360 PQQ_2: PQQ-like domai 99.0 4.3E-07 9.2E-12 91.5 27.2 225 464-710 2-237 (238)
281 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.2E-12 90.1 21.1 240 456-705 84-333 (344)
282 PLN02919 haloacid dehalogenase 99.0 6.6E-07 1.4E-11 107.8 32.3 257 385-654 571-892 (1057)
283 PRK11138 outer membrane biogen 99.0 5.1E-07 1.1E-11 98.3 28.9 286 392-713 68-363 (394)
284 KOG4190 Uncharacterized conser 99.0 3.5E-09 7.5E-14 109.7 11.0 281 378-699 732-1032(1034)
285 KOG4190 Uncharacterized conser 98.9 8.8E-09 1.9E-13 106.8 12.4 273 339-646 742-1032(1034)
286 KOG1912 WD40 repeat protein [G 98.9 1E-07 2.2E-12 103.1 19.9 304 375-706 9-367 (1062)
287 KOG4532 WD40-like repeat conta 98.9 3.1E-07 6.7E-12 87.9 20.8 240 387-653 73-334 (344)
288 COG5170 CDC55 Serine/threonine 98.8 6.9E-08 1.5E-12 93.9 14.4 260 380-650 25-367 (460)
289 KOG2314 Translation initiation 98.8 1.6E-06 3.5E-11 90.8 25.3 269 384-704 213-526 (698)
290 PF04762 IKI3: IKI3 family; I 98.8 3.9E-06 8.3E-11 99.4 31.9 271 380-703 74-379 (928)
291 PF07433 DUF1513: Protein of u 98.8 4.4E-06 9.5E-11 84.1 27.2 219 456-696 17-278 (305)
292 PF08450 SGL: SMP-30/Gluconola 98.8 2E-05 4.2E-10 79.9 31.5 213 451-689 4-241 (246)
293 PF13360 PQQ_2: PQQ-like domai 98.8 3.2E-06 6.9E-11 85.1 25.5 226 402-656 2-236 (238)
294 PF08450 SGL: SMP-30/Gluconola 98.8 1.1E-05 2.3E-10 81.8 28.9 219 386-639 4-244 (246)
295 COG5170 CDC55 Serine/threonine 98.8 1.3E-07 2.9E-12 92.0 13.9 252 445-702 25-366 (460)
296 KOG0309 Conserved WD40 repeat- 98.7 1.1E-07 2.3E-12 102.3 13.6 278 338-651 30-340 (1081)
297 KOG3914 WD repeat protein WDR4 98.7 1.2E-07 2.6E-12 95.8 12.4 161 528-708 64-228 (390)
298 PRK04043 tolB translocation pr 98.7 1E-05 2.2E-10 88.0 28.1 193 382-614 188-407 (419)
299 PF07433 DUF1513: Protein of u 98.7 1.5E-05 3.2E-10 80.4 26.8 229 384-644 7-279 (305)
300 KOG1912 WD40 repeat protein [G 98.7 1.4E-06 3E-11 94.7 20.6 243 445-706 14-307 (1062)
301 PF15492 Nbas_N: Neuroblastoma 98.7 8.6E-06 1.9E-10 79.6 23.9 216 491-712 3-270 (282)
302 KOG3914 WD repeat protein WDR4 98.7 2.7E-07 5.9E-12 93.3 13.8 149 456-615 74-232 (390)
303 PF15492 Nbas_N: Neuroblastoma 98.6 2.2E-05 4.7E-10 76.8 24.9 238 340-616 5-269 (282)
304 KOG2695 WD40 repeat protein [G 98.6 7.5E-08 1.6E-12 95.1 8.0 163 492-661 218-387 (425)
305 KOG4649 PQQ (pyrrolo-quinoline 98.6 4.9E-05 1.1E-09 72.9 26.4 141 393-557 23-166 (354)
306 KOG4714 Nucleoporin [Nuclear s 98.6 3.6E-07 7.9E-12 87.1 11.3 198 488-704 39-255 (319)
307 KOG4714 Nucleoporin [Nuclear s 98.6 5.6E-07 1.2E-11 85.8 12.4 204 384-607 39-255 (319)
308 PF06433 Me-amine-dh_H: Methyl 98.6 6.1E-05 1.3E-09 76.9 26.5 273 354-660 17-330 (342)
309 KOG1832 HIV-1 Vpr-binding prot 98.5 6.6E-08 1.4E-12 105.7 4.8 194 444-658 1099-1299(1516)
310 KOG1275 PAB-dependent poly(A) 98.5 1.6E-06 3.5E-11 95.9 15.2 179 456-648 147-340 (1118)
311 cd00216 PQQ_DH Dehydrogenases 98.5 7.1E-05 1.5E-09 83.6 28.8 290 393-713 61-434 (488)
312 KOG0882 Cyclophilin-related pe 98.5 1.3E-06 2.8E-11 89.3 13.2 253 444-707 7-309 (558)
313 PF10607 CLTH: CTLH/CRA C-term 98.5 2.9E-07 6.3E-12 84.9 7.7 132 46-187 5-138 (145)
314 cd00216 PQQ_DH Dehydrogenases 98.4 0.00043 9.4E-09 77.3 32.0 282 344-660 61-434 (488)
315 KOG0396 Uncharacterized conser 98.4 2.6E-06 5.6E-11 85.5 12.1 119 13-132 115-241 (389)
316 KOG2066 Vacuolar assembly/sort 98.4 1.1E-05 2.4E-10 88.6 17.6 185 445-650 38-233 (846)
317 KOG1645 RING-finger-containing 98.4 0.00013 2.9E-09 74.1 23.3 240 444-704 191-462 (463)
318 KOG0882 Cyclophilin-related pe 98.4 2.5E-06 5.4E-11 87.4 11.2 215 484-708 8-236 (558)
319 KOG2114 Vacuolar assembly/sort 98.4 3.2E-05 7E-10 85.6 20.2 204 492-710 30-250 (933)
320 KOG2695 WD40 repeat protein [G 98.3 1.5E-06 3.2E-11 86.2 8.6 152 344-524 225-386 (425)
321 KOG1832 HIV-1 Vpr-binding prot 98.3 3.4E-07 7.4E-12 100.3 4.1 197 475-705 1091-1293(1516)
322 PF00400 WD40: WD domain, G-be 98.3 1.8E-06 3.8E-11 59.5 6.4 39 516-554 1-39 (39)
323 PRK02888 nitrous-oxide reducta 98.3 4.8E-05 1E-09 83.6 20.5 187 456-651 141-405 (635)
324 KOG2066 Vacuolar assembly/sort 98.3 1E-05 2.2E-10 88.9 15.1 189 486-704 40-234 (846)
325 KOG1920 IkappaB kinase complex 98.3 0.00028 6.1E-09 81.3 25.1 268 381-702 68-364 (1265)
326 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0028 6.1E-08 71.2 32.4 293 393-714 69-501 (527)
327 smart00668 CTLH C-terminal to 98.2 1.2E-06 2.6E-11 66.5 3.6 53 45-98 4-56 (58)
328 PF00400 WD40: WD domain, G-be 98.2 4.7E-06 1E-10 57.3 6.4 38 475-512 1-39 (39)
329 KOG1920 IkappaB kinase complex 98.2 0.00026 5.6E-09 81.5 22.9 236 339-609 75-325 (1265)
330 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0045 9.8E-08 59.8 27.6 142 345-516 24-167 (354)
331 PF14583 Pectate_lyase22: Olig 98.2 0.0046 9.9E-08 64.6 30.0 280 387-703 41-381 (386)
332 KOG1275 PAB-dependent poly(A) 98.1 6.8E-05 1.5E-09 83.5 16.5 184 498-709 149-347 (1118)
333 PF04053 Coatomer_WDAD: Coatom 98.1 0.00036 7.9E-09 75.8 22.1 223 381-651 32-263 (443)
334 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0022 4.7E-08 68.7 27.7 267 390-691 1-345 (353)
335 KOG3621 WD40 repeat-containing 98.1 0.00086 1.9E-08 73.3 23.5 279 380-706 32-356 (726)
336 PF08596 Lgl_C: Lethal giant l 98.1 0.00098 2.1E-08 71.5 23.9 270 383-693 3-326 (395)
337 KOG2114 Vacuolar assembly/sort 98.1 0.00055 1.2E-08 76.2 22.0 204 448-659 27-252 (933)
338 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.013 2.8E-07 65.9 33.7 245 394-660 121-500 (527)
339 PF04053 Coatomer_WDAD: Coatom 98.0 0.0017 3.8E-08 70.6 24.2 219 447-705 33-264 (443)
340 KOG3617 WD40 and TPR repeat-co 98.0 0.00011 2.3E-09 81.0 14.4 100 456-557 27-132 (1416)
341 COG0823 TolB Periplasmic compo 98.0 0.0011 2.5E-08 71.7 22.4 178 465-657 173-365 (425)
342 PF11768 DUF3312: Protein of u 98.0 0.0021 4.6E-08 69.3 23.5 93 600-706 238-332 (545)
343 KOG1645 RING-finger-containing 97.9 0.0004 8.6E-09 70.8 16.1 92 467-559 175-269 (463)
344 PF06433 Me-amine-dh_H: Methyl 97.9 0.031 6.8E-07 57.5 29.9 229 465-711 67-328 (342)
345 smart00667 LisH Lissencephaly 97.9 1.6E-05 3.4E-10 52.8 4.2 32 12-43 2-33 (34)
346 KOG1008 Uncharacterized conser 97.9 1.4E-05 3E-10 85.6 5.0 246 445-703 55-335 (783)
347 PF11768 DUF3312: Protein of u 97.9 0.0039 8.5E-08 67.3 23.4 109 447-557 206-330 (545)
348 PRK02888 nitrous-oxide reducta 97.9 0.0025 5.3E-08 70.5 22.2 92 598-704 296-405 (635)
349 KOG1008 Uncharacterized conser 97.8 5.2E-06 1.1E-10 88.7 1.4 203 486-705 57-277 (783)
350 KOG3617 WD40 and TPR repeat-co 97.8 0.00064 1.4E-08 75.2 17.0 104 386-514 20-131 (1416)
351 COG3386 Gluconolactonase [Carb 97.8 0.0073 1.6E-07 62.5 23.9 185 447-640 66-275 (307)
352 PF04841 Vps16_N: Vps16, N-ter 97.7 0.027 5.8E-07 61.3 28.1 181 466-659 62-255 (410)
353 COG3490 Uncharacterized protei 97.7 0.0074 1.6E-07 59.3 20.8 232 451-702 72-347 (366)
354 PF08513 LisH: LisH; InterPro 97.7 4.5E-05 9.8E-10 47.1 3.7 27 14-40 1-27 (27)
355 COG0823 TolB Periplasmic compo 97.7 0.0016 3.4E-08 70.7 17.9 180 447-641 193-390 (425)
356 PF06977 SdiA-regulated: SdiA- 97.7 0.031 6.7E-07 55.9 24.9 210 480-700 16-247 (248)
357 COG3391 Uncharacterized conser 97.6 0.025 5.4E-07 61.1 25.9 202 450-659 77-292 (381)
358 PRK13616 lipoprotein LpqB; Pro 97.6 0.0091 2E-07 67.6 22.6 203 486-717 350-582 (591)
359 PF06977 SdiA-regulated: SdiA- 97.6 0.044 9.6E-07 54.7 24.9 198 444-647 19-247 (248)
360 PF14583 Pectate_lyase22: Olig 97.6 0.12 2.5E-06 54.4 28.6 229 456-707 47-332 (386)
361 KOG3621 WD40 repeat-containing 97.6 0.00081 1.8E-08 73.5 12.9 113 445-557 32-155 (726)
362 PF03178 CPSF_A: CPSF A subuni 97.5 0.018 3.9E-07 60.8 22.8 173 465-650 2-202 (321)
363 PF00780 CNH: CNH domain; Int 97.5 0.12 2.6E-06 53.0 28.6 238 343-616 6-265 (275)
364 PF05096 Glu_cyclase_2: Glutam 97.5 0.035 7.5E-07 55.2 22.4 201 476-692 34-250 (264)
365 KOG2817 Predicted E3 ubiquitin 97.5 0.00065 1.4E-08 69.6 10.5 120 10-131 113-246 (394)
366 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.04 8.6E-07 59.0 24.4 242 337-594 47-344 (353)
367 PF00780 CNH: CNH domain; Int 97.4 0.15 3.2E-06 52.4 27.4 225 456-710 7-262 (275)
368 COG3391 Uncharacterized conser 97.4 0.15 3.3E-06 55.0 28.0 229 467-716 13-252 (381)
369 PF03178 CPSF_A: CPSF A subuni 97.4 0.017 3.6E-07 61.0 19.7 180 506-704 2-203 (321)
370 PF08553 VID27: VID27 cytoplas 97.3 0.0045 9.8E-08 71.0 15.9 132 464-605 503-646 (794)
371 PF04841 Vps16_N: Vps16, N-ter 97.3 0.13 2.8E-06 56.1 26.6 168 447-631 81-270 (410)
372 PF02897 Peptidase_S9_N: Proly 97.3 0.19 4.1E-06 55.1 27.9 241 383-655 125-409 (414)
373 PF05694 SBP56: 56kDa selenium 97.3 0.079 1.7E-06 56.1 22.8 257 367-639 52-392 (461)
374 PF08596 Lgl_C: Lethal giant l 97.2 0.12 2.5E-06 55.8 24.5 208 487-708 3-295 (395)
375 COG3386 Gluconolactonase [Carb 97.2 0.12 2.6E-06 53.6 23.7 189 457-660 37-252 (307)
376 PF08553 VID27: VID27 cytoplas 97.2 0.017 3.7E-07 66.4 18.4 142 499-649 497-646 (794)
377 KOG2395 Protein involved in va 97.1 0.024 5.3E-07 60.3 17.4 137 459-606 349-500 (644)
378 KOG1897 Damage-specific DNA bi 97.1 0.89 1.9E-05 52.5 30.9 316 345-705 549-900 (1096)
379 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.018 4E-07 48.9 12.5 97 384-509 2-109 (111)
380 KOG2395 Protein involved in va 97.0 0.021 4.5E-07 60.8 15.2 144 498-649 348-499 (644)
381 KOG4640 Anaphase-promoting com 96.9 0.0049 1.1E-07 66.8 9.5 93 486-587 21-115 (665)
382 smart00320 WD40 WD40 repeats. 96.8 0.0031 6.8E-08 41.6 5.4 39 516-554 2-40 (40)
383 COG3490 Uncharacterized protei 96.8 0.27 5.9E-06 48.7 20.1 213 489-712 71-319 (366)
384 PF02897 Peptidase_S9_N: Proly 96.8 1.2 2.5E-05 48.9 29.1 239 451-707 128-408 (414)
385 PRK13616 lipoprotein LpqB; Pro 96.7 0.099 2.2E-06 59.4 18.9 184 447-644 350-562 (591)
386 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 1.2 2.7E-05 47.9 28.5 83 526-616 307-408 (415)
387 KOG4499 Ca2+-binding protein R 96.7 0.34 7.5E-06 46.6 19.2 151 485-639 108-273 (310)
388 PF14870 PSII_BNR: Photosynthe 96.7 0.97 2.1E-05 46.6 30.5 279 380-700 15-301 (302)
389 PHA02713 hypothetical protein; 96.7 0.12 2.7E-06 58.6 19.6 195 496-719 303-547 (557)
390 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.12 2.6E-06 44.1 14.3 100 529-645 2-109 (111)
391 smart00320 WD40 WD40 repeats. 96.6 0.0058 1.3E-07 40.3 5.5 38 475-512 2-40 (40)
392 PF05096 Glu_cyclase_2: Glutam 96.6 0.89 1.9E-05 45.4 22.8 184 448-639 46-249 (264)
393 KOG2079 Vacuolar assembly/sort 96.5 0.048 1E-06 62.9 14.8 106 448-555 91-202 (1206)
394 KOG4640 Anaphase-promoting com 96.5 0.012 2.5E-07 64.0 9.1 90 446-536 20-115 (665)
395 KOG4441 Proteins containing BT 96.5 0.43 9.3E-06 54.2 22.2 231 456-714 285-555 (571)
396 TIGR03074 PQQ_membr_DH membran 96.5 0.55 1.2E-05 54.9 23.3 186 456-658 260-485 (764)
397 TIGR03074 PQQ_membr_DH membran 96.4 0.57 1.2E-05 54.8 22.8 204 497-711 195-485 (764)
398 KOG2444 WD40 repeat protein [G 96.3 0.0062 1.3E-07 58.1 5.5 106 541-658 33-140 (238)
399 PHA02713 hypothetical protein; 96.2 0.41 8.8E-06 54.5 20.5 185 456-653 304-536 (557)
400 KOG4499 Ca2+-binding protein R 96.2 1.3 2.8E-05 42.8 20.1 203 456-682 27-263 (310)
401 PF14870 PSII_BNR: Photosynthe 96.1 2 4.4E-05 44.3 24.6 159 482-647 141-301 (302)
402 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.1 0.0038 8.3E-08 56.1 2.5 95 80-186 29-126 (133)
403 COG3204 Uncharacterized protei 96.0 0.98 2.1E-05 45.3 18.7 169 522-704 81-264 (316)
404 PF04494 TFIID_90kDa: WD40 ass 96.0 0.0035 7.5E-08 57.1 1.8 97 80-185 40-139 (142)
405 KOG2079 Vacuolar assembly/sort 95.9 0.031 6.7E-07 64.4 9.3 104 589-703 99-203 (1206)
406 KOG4441 Proteins containing BT 95.8 1.3 2.8E-05 50.4 21.7 193 449-653 325-549 (571)
407 COG4257 Vgb Streptogramin lyas 95.7 1.3 2.9E-05 43.8 18.2 204 488-711 64-268 (353)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 4 8.6E-05 44.1 27.6 82 620-708 307-403 (415)
409 PRK13684 Ycf48-like protein; P 95.6 3.9 8.4E-05 43.3 30.6 157 526-703 172-331 (334)
410 PF10647 Gmad1: Lipoprotein Lp 95.4 3.4 7.4E-05 41.7 22.3 148 487-643 25-188 (253)
411 PF12894 Apc4_WD40: Anaphase-p 95.4 0.04 8.7E-07 39.2 5.0 36 671-710 12-47 (47)
412 PF14727 PHTB1_N: PTHB1 N-term 95.4 5 0.00011 43.5 32.2 278 393-710 37-367 (418)
413 PF05694 SBP56: 56kDa selenium 95.3 3 6.5E-05 44.6 20.5 95 464-558 221-344 (461)
414 PF10168 Nup88: Nuclear pore c 95.3 3.8 8.3E-05 47.7 23.5 72 486-557 85-180 (717)
415 COG1520 FOG: WD40-like repeat 95.2 2.3 5.1E-05 45.7 20.7 203 496-714 68-279 (370)
416 PF10168 Nup88: Nuclear pore c 95.2 0.57 1.2E-05 54.4 16.3 91 620-714 84-190 (717)
417 KOG2444 WD40 repeat protein [G 95.2 0.063 1.4E-06 51.5 7.0 102 456-557 70-178 (238)
418 PHA03098 kelch-like protein; P 94.9 1.8 3.9E-05 49.2 19.8 185 456-653 295-514 (534)
419 COG3204 Uncharacterized protei 94.9 4.7 0.0001 40.6 21.6 173 482-659 82-271 (316)
420 PF12894 Apc4_WD40: Anaphase-p 94.8 0.082 1.8E-06 37.6 5.1 33 620-653 11-43 (47)
421 PF12234 Rav1p_C: RAVE protein 94.7 0.87 1.9E-05 51.5 15.6 114 580-704 32-157 (631)
422 PF10647 Gmad1: Lipoprotein Lp 94.7 1.9 4E-05 43.7 16.8 150 528-694 25-186 (253)
423 PF15390 DUF4613: Domain of un 94.7 1 2.2E-05 49.4 15.1 146 446-606 19-186 (671)
424 PF12234 Rav1p_C: RAVE protein 94.6 1.1 2.4E-05 50.7 16.0 117 486-605 30-155 (631)
425 PF15390 DUF4613: Domain of un 94.2 1.3 2.7E-05 48.7 14.8 154 487-652 21-188 (671)
426 TIGR03118 PEPCTERM_chp_1 conse 94.1 7.6 0.00016 39.5 24.6 204 449-659 25-288 (336)
427 PRK10115 protease 2; Provision 94.1 15 0.00033 42.9 31.2 192 448-650 128-344 (686)
428 TIGR02604 Piru_Ver_Nterm putat 94.1 1.6 3.5E-05 46.8 15.9 150 527-695 14-205 (367)
429 COG3823 Glutamine cyclotransfe 94.0 2.7 5.8E-05 40.0 14.6 182 496-692 55-248 (262)
430 KOG1897 Damage-specific DNA bi 93.7 18 0.00039 42.5 34.7 324 339-705 264-615 (1096)
431 TIGR03118 PEPCTERM_chp_1 conse 93.7 9.1 0.0002 38.9 19.8 206 488-706 25-282 (336)
432 PHA02790 Kelch-like protein; P 93.7 5 0.00011 44.9 19.2 183 456-652 272-472 (480)
433 KOG3630 Nuclear pore complex, 93.4 0.98 2.1E-05 52.9 12.7 124 464-594 123-260 (1405)
434 COG3823 Glutamine cyclotransfe 93.4 5.3 0.00012 38.1 15.3 180 451-638 50-247 (262)
435 TIGR03606 non_repeat_PQQ dehyd 93.2 11 0.00024 41.3 20.1 114 525-641 28-166 (454)
436 PF03022 MRJP: Major royal jel 93.1 8 0.00017 39.9 18.2 168 466-638 35-253 (287)
437 PLN00033 photosystem II stabil 93.0 8.7 0.00019 41.5 18.9 152 488-647 241-396 (398)
438 KOG3630 Nuclear pore complex, 93.0 0.94 2E-05 53.1 11.8 141 487-637 102-260 (1405)
439 PRK13684 Ycf48-like protein; P 92.9 15 0.00031 38.9 31.7 154 485-648 172-329 (334)
440 PHA03098 kelch-like protein; P 92.7 7.3 0.00016 44.2 19.2 101 456-558 390-513 (534)
441 KOG2280 Vacuolar assembly/sort 92.6 7.5 0.00016 44.1 17.8 170 448-630 85-269 (829)
442 KOG2280 Vacuolar assembly/sort 92.6 16 0.00035 41.5 20.3 98 527-639 217-314 (829)
443 COG5167 VID27 Protein involved 92.1 2.5 5.3E-05 45.5 12.7 139 456-606 479-632 (776)
444 PF05935 Arylsulfotrans: Aryls 91.9 18 0.0004 40.3 20.4 147 504-661 126-312 (477)
445 PF14761 HPS3_N: Hermansky-Pud 91.8 13 0.00028 36.0 16.3 153 490-649 22-213 (215)
446 PF14781 BBS2_N: Ciliary BBSom 91.7 9.1 0.0002 34.0 13.9 109 492-612 5-131 (136)
447 PF05935 Arylsulfotrans: Aryls 91.3 14 0.00029 41.3 18.6 130 583-715 153-313 (477)
448 TIGR02604 Piru_Ver_Nterm putat 91.2 6.8 0.00015 42.1 15.8 147 487-641 15-204 (367)
449 COG1520 FOG: WD40-like repeat 91.1 25 0.00054 37.8 26.7 198 456-660 68-278 (370)
450 PRK10115 protease 2; Provision 91.1 37 0.00081 39.8 31.9 235 382-653 127-397 (686)
451 PF08728 CRT10: CRT10; InterP 90.8 11 0.00024 43.3 17.1 113 580-702 103-245 (717)
452 PLN00033 photosystem II stabil 90.8 27 0.00059 37.7 32.8 151 529-700 241-396 (398)
453 KOG2377 Uncharacterized conser 90.7 4.6 0.0001 42.9 12.9 151 343-516 32-187 (657)
454 KOG4460 Nuclear pore complex, 90.7 3.5 7.7E-05 44.5 12.2 90 621-714 104-209 (741)
455 KOG2247 WD40 repeat-containing 90.6 0.037 8E-07 58.5 -2.2 148 529-702 37-187 (615)
456 PHA02790 Kelch-like protein; P 90.0 15 0.00032 41.1 17.6 184 498-710 274-475 (480)
457 PF10214 Rrn6: RNA polymerase 90.0 49 0.0011 39.4 28.3 122 527-651 146-277 (765)
458 COG3292 Predicted periplasmic 89.5 28 0.00062 38.4 17.8 272 380-698 163-442 (671)
459 PF07569 Hira: TUP1-like enhan 89.2 2.7 5.9E-05 41.3 9.7 73 534-609 18-98 (219)
460 PF13449 Phytase-like: Esteras 89.0 33 0.00072 36.1 18.4 112 527-640 20-166 (326)
461 COG4590 ABC-type uncharacteriz 88.9 2.9 6.4E-05 44.2 9.8 170 477-655 212-391 (733)
462 PF07995 GSDH: Glucose / Sorbo 88.8 9.9 0.00021 40.1 14.3 110 528-642 3-135 (331)
463 KOG3616 Selective LIM binding 88.6 15 0.00032 41.6 15.3 163 339-516 21-195 (1636)
464 PF08728 CRT10: CRT10; InterP 88.6 16 0.00035 42.1 16.3 143 456-605 49-245 (717)
465 PF13449 Phytase-like: Esteras 88.5 35 0.00077 35.9 22.7 150 485-636 19-230 (326)
466 PF14781 BBS2_N: Ciliary BBSom 88.4 16 0.00035 32.5 12.6 116 533-657 5-132 (136)
467 COG5276 Uncharacterized conser 88.2 31 0.00068 34.9 29.3 265 344-649 96-368 (370)
468 PF14727 PHTB1_N: PTHB1 N-term 88.1 43 0.00094 36.4 29.1 151 343-513 36-203 (418)
469 KOG2247 WD40 repeat-containing 87.9 0.057 1.2E-06 57.2 -3.2 140 386-551 39-183 (615)
470 PF02333 Phytase: Phytase; In 87.5 43 0.00094 35.7 23.2 191 498-705 70-292 (381)
471 COG5276 Uncharacterized conser 87.4 35 0.00076 34.6 28.1 150 446-607 86-242 (370)
472 PF14761 HPS3_N: Hermansky-Pud 87.1 24 0.00051 34.2 14.1 119 582-705 22-165 (215)
473 PF03022 MRJP: Major royal jel 87.0 21 0.00046 36.8 15.0 149 549-704 35-216 (287)
474 KOG2377 Uncharacterized conser 86.8 28 0.0006 37.3 15.4 105 524-636 64-169 (657)
475 KOG1900 Nuclear pore complex, 86.7 8.2 0.00018 46.6 12.8 147 502-651 95-273 (1311)
476 KOG1916 Nuclear protein, conta 86.5 0.8 1.7E-05 52.3 4.4 162 444-611 130-328 (1283)
477 PF07569 Hira: TUP1-like enhan 86.3 4.1 8.8E-05 40.1 8.9 74 628-705 18-97 (219)
478 PF10395 Utp8: Utp8 family; I 85.2 77 0.0017 36.4 24.3 165 525-705 128-307 (670)
479 PF10313 DUF2415: Uncharacteri 85.1 2.7 5.9E-05 29.1 4.8 31 527-557 1-34 (43)
480 PF07995 GSDH: Glucose / Sorbo 84.9 56 0.0012 34.5 27.9 234 449-698 4-330 (331)
481 KOG1916 Nuclear protein, conta 84.8 1.8 4E-05 49.5 6.2 154 354-560 153-327 (1283)
482 PF10313 DUF2415: Uncharacteri 84.5 4.1 9E-05 28.2 5.5 31 621-651 1-34 (43)
483 PF12657 TFIIIC_delta: Transcr 83.9 7.5 0.00016 36.6 9.3 39 672-712 87-131 (173)
484 smart00036 CNH Domain found in 83.7 58 0.0013 33.8 25.7 234 392-659 12-279 (302)
485 COG5290 IkappaB kinase complex 83.3 28 0.0006 39.9 14.2 96 528-632 248-348 (1243)
486 KOG4460 Nuclear pore complex, 83.3 77 0.0017 34.8 18.9 72 487-558 105-200 (741)
487 COG5290 IkappaB kinase complex 82.9 41 0.00088 38.7 15.2 127 579-719 248-382 (1243)
488 KOG1896 mRNA cleavage and poly 82.6 73 0.0016 38.6 17.8 151 394-556 1047-1213(1366)
489 TIGR03606 non_repeat_PQQ dehyd 82.2 35 0.00075 37.5 14.6 54 579-632 31-90 (454)
490 COG5167 VID27 Protein involved 81.4 28 0.0006 37.9 12.8 142 498-650 482-632 (776)
491 PF02333 Phytase: Phytase; In 80.6 85 0.0018 33.6 25.3 194 391-614 66-299 (381)
492 COG4257 Vgb Streptogramin lyas 79.7 72 0.0016 32.1 20.6 192 450-653 65-265 (353)
493 KOG1898 Splicing factor 3b, su 79.5 1.1E+02 0.0023 36.8 17.5 178 507-705 854-1050(1205)
494 TIGR03032 conserved hypothetic 78.6 86 0.0019 32.4 21.6 106 510-631 189-315 (335)
495 PF07250 Glyoxal_oxid_N: Glyox 78.3 40 0.00086 33.6 12.4 145 467-615 48-206 (243)
496 TIGR02276 beta_rpt_yvtn 40-res 77.9 7.7 0.00017 26.3 5.4 30 587-616 1-32 (42)
497 smart00564 PQQ beta-propeller 77.8 4.7 0.0001 25.8 4.0 26 686-711 7-32 (33)
498 PF08801 Nucleoporin_N: Nup133 77.7 1.1E+02 0.0025 33.3 19.1 33 620-652 189-221 (422)
499 KOG3522 Predicted guanine nucl 77.7 31 0.00067 39.9 12.5 149 344-516 547-699 (925)
500 PF07250 Glyoxal_oxid_N: Glyox 76.9 36 0.00077 34.0 11.6 145 508-659 48-206 (243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-72 Score=553.49 Aligned_cols=495 Identities=16% Similarity=0.227 Sum_probs=425.3
Q ss_pred CCCccccCccchhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch---HHHHHHHHhCCCHHHHHHHhcccccccCCcccc
Q 004789 2 HGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN---VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK 78 (730)
Q Consensus 2 ~~~~~~~~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~ 78 (730)
.|+||+|. +.|++||+.|+|.++||.+|+.+||.|||+.+. ++.|.++|++|+|+.++..+..+...++..++.
T Consensus 9 l~~k~lik---k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e 85 (519)
T KOG0293|consen 9 LGSKGLIK---KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKE 85 (519)
T ss_pred hhhhceec---cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHH
Confidence 58999997 999999999999999999999999999999996 999999999999999999998887344444544
Q ss_pred chhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcccc-ccccccccCCCCChhhHHHHHHHHHH
Q 004789 79 KMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKD-LRENEQLSGYTNATSSRAKLIDSLKL 157 (730)
Q Consensus 79 ~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~~~~r~~l~~~l~~ 157 (730)
+.|++.||+|||++..|...+|+.+||+...++ -.+.+++++|+.-|..++ ...++.-. .......|.+|+++|++
T Consensus 86 -a~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elsk 162 (519)
T KOG0293|consen 86 -AMFLVNKQIFLEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSK 162 (519)
T ss_pred -HHHHHHHHHHHHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHh
Confidence 999999999999999999999999999999999 458999999988776654 22222222 23356679999999999
Q ss_pred hhhccccccccccCCCCchhHHHHHHHhhCCCCCCCccchhhhhcccCCChhhhhhcccccCCCCccccccccccccccc
Q 004789 158 LVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKQQKLPSDFAERAHLFDDFKV 237 (730)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~~rL~~ll~q~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~d~~~ 237 (730)
+|+|+.+ +|++||+.||+||+ .+|.+.|+|||+...- |||.||.
T Consensus 163 yi~p~il---------lP~rRLehLl~qAv------~~Q~d~cvyhnsldsv--------------------sll~Dh~- 206 (519)
T KOG0293|consen 163 YIPPNIL---------LPKRRLEHLLEQAV------KYQRDSCVYHNSLDSV--------------------SLLSDHF- 206 (519)
T ss_pred hCCHhhc---------CChHHHHHHHHHHH------HHHHhHhHHhcccchh--------------------hhhhhcc-
Confidence 9999999 99999999999999 9999999999988875 9999999
Q ss_pred ccccCccccccccCCCCChhhHHHHHHHHhhhhcccccceeecCCCceeceecccccceeEEEEeeccCCCCCCCCCCCC
Q 004789 238 LVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA 317 (730)
Q Consensus 238 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~c~~~~~s~dg~~~~v~~~d~~~~~~~~~~~~~~~~n~~~~~~~~ 317 (730)
|.. .++|..+-+.+.
T Consensus 207 ------------------------------------c~~------------~qip~qt~qil~----------------- 221 (519)
T KOG0293|consen 207 ------------------------------------CGR------------LQIPSQTWQILQ----------------- 221 (519)
T ss_pred ------------------------------------cCc------------ccCCchhhhhHh-----------------
Confidence 976 677766655555
Q ss_pred CCCCCCCCCCccCCCCCCcccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEE
Q 004789 318 SSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 397 (730)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~ 397 (730)
.|+++||-+.||++|+|||
T Consensus 222 -------------------------------------------------------------~htdEVWfl~FS~nGkyLA 240 (519)
T KOG0293|consen 222 -------------------------------------------------------------DHTDEVWFLQFSHNGKYLA 240 (519)
T ss_pred -------------------------------------------------------------hCCCcEEEEEEcCCCeeEe
Confidence 2999999999999999999
Q ss_pred EEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC
Q 004789 398 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 474 (730)
Q Consensus 398 s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t 474 (730)
++++|.+..+|++..... -++.++.. +|..+|..+.|+ +++|++|+ +..+.+||+.+
T Consensus 241 saSkD~Taiiw~v~~d~~------------------~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVH------------------FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred eccCCceEEEEEEecCcc------------------eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 999999999998643322 12233333 799999999999 88999888 89999999999
Q ss_pred ceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCC-CCCeEEEEEeCCCCEEEEEeCCCcEE
Q 004789 475 FQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLC 551 (730)
Q Consensus 475 ~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~s~dg~I~ 551 (730)
|.+...+. ++...+.+++|.||| .+++|+.|+.|..||++ |..+..+++- .-.|.+++.++||+++++.+.|..|+
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 99998886 346789999999999 99999999999999987 5556777663 35699999999999999999999999
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 630 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 630 (730)
+++..+... .. ....+ .+|++++.|.||+++++. .+..|++||++..+.++.+.++.....+..-||.-
T Consensus 380 l~~~e~~~d-----r~-lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 380 LYNREARVD-----RG-LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred eechhhhhh-----hc-ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 999987321 11 22223 479999999999999996 89999999999888888998776677888888974
Q ss_pred -CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 631 -DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 631 -dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+..++++|++|+.||||+..+|+++.++. || ...|+ +|+|+|.+..+||+||+||+||||.+...
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-------GH-s~~vN--cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLS-------GH-SKTVN--CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeec-------CC-cceee--EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 56899999999999999999999999987 87 56688 99999999999999999999999998643
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-65 Score=485.89 Aligned_cols=487 Identities=20% Similarity=0.278 Sum_probs=412.6
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhh
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 88 (730)
..+|||||+|||+|..+++++++||+|.++++| +..|-+.|.+|+||.++..++.|+ +|++ -+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLK-LP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLK-LPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhcc-Cchh-----HHHHHHHHH
Confidence 678999999999999999999999999999998 999999999999999999999998 8866 789999999
Q ss_pred hHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHhccccccccccccCCCCChhhHHHHHHHHHHhhhcccccc
Q 004789 89 YCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQ 166 (730)
Q Consensus 89 ~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~ 166 (730)
.|||+|.++...|..+||+- +.-|+..++++|-+|..||..+.+++.+.|. ..+++..|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~-dssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG-DSSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC-cchHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999983 7778888999999999999999999999887 366888899999999988887
Q ss_pred ccccCCCCchhHHHHHHHhhCCCCCCCccchhhhhcccCCChhhhhhcccccCCCCcccccccccccccccccccCcccc
Q 004789 167 DKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKQQKLPSDFAERAHLFDDFKVLVERNPMLQ 246 (730)
Q Consensus 167 ~~~~~~~~~~~rL~~ll~q~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~d~~~~~~~~p~~~ 246 (730)
+||+||+.||+| ++|||+|| |.||
T Consensus 155 -------VppSRLlaLlGQ------------------------aLKWQqHQ-GLLP------------------------ 178 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQ------------------------ALKWQQHQ-GLLP------------------------ 178 (508)
T ss_pred -------cChHHHHHHHHH------------------------HhhhHhhc-CCCC------------------------
Confidence 999999999999 99999999 8888
Q ss_pred ccccCCCCChhhHHHHHHHHhhhhcccccceeecCCCceeceecccccceeEEEEeeccCCCCCCCCCCCCCCCCCCCCC
Q 004789 247 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS 326 (730)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~c~~~~~s~dg~~~~v~~~d~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 326 (730)
|+. ++|.+++....
T Consensus 179 -------------------------PGt---------------~iDLFRGkAA~-------------------------- 192 (508)
T KOG0275|consen 179 -------------------------PGT---------------TIDLFRGKAAM-------------------------- 192 (508)
T ss_pred -------------------------CCc---------------eeeeccchhhh--------------------------
Confidence 543 66777665544
Q ss_pred CccCCCCCCcccCCCCCCCeeEeecCCCcEEEEeecCCC-CCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcE
Q 004789 327 SCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 405 (730)
Q Consensus 327 ~~~~~~~~~~~~~~spdg~~lat~~~dg~i~lWd~~~~~-~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I 405 (730)
. +..+.. .+...+.+.+ |.++.+.|..|||||+||++||.||.|
T Consensus 193 -------------------------K-------~~~Ee~~Pt~l~r~IKF---g~KSh~EcA~FSPDgqyLvsgSvDGFi 237 (508)
T KOG0275|consen 193 -------------------------K-------DQEEERYPTQLARSIKF---GQKSHVECARFSPDGQYLVSGSVDGFI 237 (508)
T ss_pred -------------------------h-------hhHhhhchHHhhhheec---ccccchhheeeCCCCceEeecccccee
Confidence 0 000000 0001111121 357788999999999999999999999
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEc
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 482 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~ 482 (730)
.+|+..+++.... .-|+..+..++ +..+|.|+.|+ .+.+|+|+ ||.|++|.+.+|.|++.|.
T Consensus 238 EVWny~~GKlrKD--------LkYQAqd~fMM-------md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 238 EVWNYTTGKLRKD--------LKYQAQDNFMM-------MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred eeehhccchhhhh--------hhhhhhcceee-------cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 9999999887444 22344444333 78999999999 77899999 9999999999999999998
Q ss_pred -CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce
Q 004789 483 -NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 483 -~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
.|...|+|+.|+.|+ .+++++.|.++++..+.+|++++.++||++.|+...|++||..+++++.||+|++|+..+.+.
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC 382 (508)
T ss_pred hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhh
Confidence 899999999999999 999999999999999999999999999999999999999999999999999999999999654
Q ss_pred ecceeecccccCCCCCCCCeEEEEEec-CCcEEEEE-ecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEecCCCEEEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYV 637 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~s 637 (730)
... +...... .+|.++-.-| +...++++ ..++++|.++ .|+.++.+..+. ..+...+++.||.|.++++
T Consensus 383 ~~T-----fk~~~~d--~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 383 LST-----FKPLGTD--YPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred hhh-----ccCCCCc--ccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 332 2221111 5788888888 44566665 7789999999 688888887543 2667888999999999999
Q ss_pred EEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 638 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 638 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
.++|+.+|.|.+.+|++...+.. | ...|. +++.|| ..+.+|+-+.||.+++|.+
T Consensus 455 igED~vlYCF~~~sG~LE~tl~V-------h-EkdvI--Gl~HHP-HqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGKLERTLPV-------H-EKDVI--GLTHHP-HQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred EccCcEEEEEEeecCceeeeeec-------c-ccccc--ccccCc-ccchhhhhcccchhhhcCC
Confidence 99999999999999998888863 3 33344 899999 8899999999999999964
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-50 Score=388.77 Aligned_cols=325 Identities=20% Similarity=0.260 Sum_probs=284.1
Q ss_pred CccCCCCCCcc-cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcE
Q 004789 327 SCFNDNNQSRE-STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 405 (730)
Q Consensus 327 ~~~~~~~~~~~-~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I 405 (730)
+.|+++.++.- ..|+|+|+.||+|+.|.|+|+||.........| .||...|.|++|+|||+.||+|+.||+|
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-------KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-------KGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-------cCCccEEEEEEECCCcchhhccccCCeE
Confidence 34455554444 489999999999999999999999753322222 3599999999999999999999999999
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-------CcEEEEee-CCEEEEEEcCCceE
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQT 477 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-------~~~l~s~s-dg~I~vwd~~t~~~ 477 (730)
++||-++++.... .+ .+|...|.+++|. .++||+++ ||.|+|||+..+.+
T Consensus 182 ~lwdpktg~~~g~-----------------~l-----~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 182 RLWDPKTGQQIGR-----------------AL-----RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC 239 (480)
T ss_pred EEecCCCCCcccc-----------------cc-----cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE
Confidence 9998877765211 11 1799999999998 56899999 99999999999999
Q ss_pred EEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEe-----------CCCC-------
Q 004789 478 LATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----------LSLN------- 539 (730)
Q Consensus 478 ~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-----------pd~~------- 539 (730)
+..+.+|+.+|+|+.|--+|++++|+.|++|++|+...|.+.+.+++|...|+.++.+ |.++
T Consensus 240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 9999999999999999888899999999999999999999999999999999998876 3333
Q ss_pred ------------------EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 004789 540 ------------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 600 (730)
Q Consensus 540 ------------------~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I 600 (730)
.|++|+.|.++.+|+.... .+++. -..+|. .-|..+.||||++++|+ +.|.+|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----kkpi~-rmtgHq---~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----KKPIT-RMTGHQ---ALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----ccchh-hhhchh---hheeeEEECCCccEEEEeecccce
Confidence 4999999999999998763 24555 567887 68999999999999999 699999
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 601 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 601 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
++||.++|+.+.+|++ |-..|+.++|+.|.++|++|+.|.++++|++++.++...+. || ...|+ +|.|
T Consensus 392 kLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-------Gh-~DEVf--~vDw 459 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-------GH-ADEVF--AVDW 459 (480)
T ss_pred eeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-------CC-CceEE--EEEe
Confidence 9999999999999974 69999999999999999999999999999999999887776 87 66799 9999
Q ss_pred ecCCCCEEEEEeCCCcEEEEe
Q 004789 681 HPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd 701 (730)
+| ||..+++|+.|..+++|.
T Consensus 460 sp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 SP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cC-CCceeecCCCceEEEeec
Confidence 99 999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-41 Score=329.28 Aligned_cols=285 Identities=19% Similarity=0.274 Sum_probs=247.4
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.||.++|.|++|+|+|..|++|+.|.++++||+.+..... ...+|...|.|++|+
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-----------------------t~KgH~~WVlcvawsPD 168 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-----------------------TCKGHKNWVLCVAWSPD 168 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce-----------------------eecCCccEEEEEEECCC
Confidence 5799999999999999999999999999999987664311 112799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEE-EEEcCCCCCeEEEEEcC-----CC-eEEEEECCCcEEEEecCCCceEEEEcCCCC
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLP-----QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~-~~~~~~~~~v~~i~~sp-----dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 527 (730)
|+.||+|+ ||+|++||.++|+++ ..+.+|...|++++|.| .. +|++++.||.|+|||+..++++..+.+|+.
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 99999999 999999999998765 67889999999999976 34 899999999999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe-----------cCCc------
Q 004789 528 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-----------PDQI------ 590 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s-----------pdg~------ 590 (730)
+|+|+.|--+| +|++|+.|++|++|+...| ..+. .+.+|. ..|+.++.+ |.++
T Consensus 249 ~VTCvrwGG~g-liySgS~DrtIkvw~a~dG-----~~~r-~lkGHa---hwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 249 SVTCVRWGGEG-LIYSGSQDRTIKVWRALDG-----KLCR-ELKGHA---HWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred ceEEEEEcCCc-eEEecCCCceEEEEEccch-----hHHH-hhcccc---hheeeeeccchhhhhccccccccccCCChH
Confidence 99999998655 8999999999999999884 3344 567887 688888766 3333
Q ss_pred -------------------EEEEE-ecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 591 -------------------HLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 591 -------------------~l~~s-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.++++ .|.++.+|+.... +++..+. +|..-|+.+.||||++++++++-|..|++|+.
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 37875 7889999997544 4555554 57999999999999999999999999999999
Q ss_pred CCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 650 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 650 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
.+|+.+..+. || -+.|| .|+|+. |.++|++|+.|.++++|++.+.+.+
T Consensus 397 ~tGk~lasfR-------GH-v~~VY--qvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 397 RTGKFLASFR-------GH-VAAVY--QVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred CCcchhhhhh-------hc-cceeE--EEEecc-CccEEEEcCCCceEEEEEeeeeeec
Confidence 9999998887 77 66799 999999 8999999999999999999887543
No 5
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-40 Score=327.59 Aligned_cols=318 Identities=16% Similarity=0.208 Sum_probs=267.1
Q ss_pred CCCCCCC-eeEeecCCCcEEEEeecCCCCCc-------ceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeec
Q 004789 339 TSLPDAD-SAVCAKSLEKSVNLKLQLINEPS-------ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 410 (730)
Q Consensus 339 ~~spdg~-~lat~~~dg~i~lWd~~~~~~~~-------~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~ 410 (730)
...|-.. .+++++.|-+.|+|++....... .+.+.-.........|++++|+.+|..||+|+.||.+++|+.
T Consensus 185 ~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~ 264 (524)
T KOG0273|consen 185 AWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNK 264 (524)
T ss_pred ecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEec
Confidence 4455544 78889999999999997521111 111111111123578999999999999999999999999997
Q ss_pred CCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCC
Q 004789 411 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 487 (730)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~ 487 (730)
..... . ....|.++|.++.|+ |.||++++ |+++.+||..+|...+.+.-|..+
T Consensus 265 ~G~l~----------------------~--tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 265 DGNLI----------------------S--TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred Cchhh----------------------h--hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 66543 1 112599999999999 99999999 999999999999999999999888
Q ss_pred eEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 488 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 488 v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
-..+.|-.+..+++++.|+.|+++-+....++.++.+|.+.|.++.|+|.|.+|++++.|+++++|..... ....
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~ 395 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVH 395 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchh
Confidence 77899976668999999999999999999999999999999999999999999999999999999998762 3333
Q ss_pred ccccCCCCCCCCeEEEEEecCC---------cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQ---------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 637 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg---------~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 637 (730)
-+.+|. ..|..+.|+|+| ..+++ +.|++|++||+..+.++..+. .|..+|++++|||+|+++++
T Consensus 396 -~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 396 -DLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM--KHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred -hhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec--cCCCceEEEEecCCCcEEEe
Confidence 455676 689999999965 34666 699999999999999999986 47999999999999999999
Q ss_pred EEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 638 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 638 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
|+.||.|.+|+..++++.+.+. | ++.|. .++|+. +|+.|..+-.||.+++-|+.
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-CCCEEEEEecCCCceEEEec
Confidence 9999999999999999998876 3 44467 999999 78999999999999998874
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.4e-41 Score=330.87 Aligned_cols=279 Identities=15% Similarity=0.209 Sum_probs=254.5
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-C-
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G- 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~- 456 (730)
|-+.+|..+.||+|++.|||||-+|.++||+..+... ++.+. +|...|.++.|+ +
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------~~~l~--gH~~~v~~~~fhP~~ 229 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------LQTLR--GHTSRVGAAVFHPVD 229 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------eEEEe--ccccceeeEEEccCC
Confidence 4688999999999999999999999999998876643 22222 799999999999 3
Q ss_pred --cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 457 --SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 457 --~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
..+|+|+ ||++++|++.+..++..+.+|...|..++|+|+| +|+|++.|.+-++||++++..+....||...|.++
T Consensus 230 ~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 4799999 9999999999999999999999999999999999 99999999999999999999988899999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 611 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~ 611 (730)
+|+|||..+++|+.|..-+|||++++ ..+. ++.+|. .+|.+|+|+|+|..||+ |.|++++|||++..+.+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtg-----r~im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTG-----RCIM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred EecCCCceeeccCccchhheeecccC-----cEEE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 99999999999999999999999996 4455 678898 79999999999999999 59999999999988887
Q ss_pred eeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 612 SQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
.++. .|..-|+.++|+| .|.+|++++.|++++||...++.+++.+. || .+.|. +++++| ++..++|
T Consensus 381 y~ip--AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-------GH-e~kV~--s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 381 YTIP--AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-------GH-EGKVI--SLDISP-DSQAIAT 447 (459)
T ss_pred eecc--cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-------CC-ccceE--EEEecc-CCceEEE
Confidence 7765 5799999999998 78999999999999999999999999988 88 55577 999999 8999999
Q ss_pred EeCCCcEEEEeC
Q 004789 691 GLTNGRVHVIEP 702 (730)
Q Consensus 691 ~s~Dg~I~iWd~ 702 (730)
++.|.++++|..
T Consensus 448 ~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 448 SSFDRTIKLWRP 459 (459)
T ss_pred eccCceeeeccC
Confidence 999999999963
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.3e-39 Score=341.94 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=236.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 459 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l 459 (730)
....++|+.|++|+..||.|-.|..|++|.+...+.... .+...+. .+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~l-------------------------k~~~~l~-------~~ 424 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKL-------------------------KDASDLS-------NI 424 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccc-------------------------cchhhhc-------cc
Confidence 356799999999999999999999999999876443111 0111100 11
Q ss_pred EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC
Q 004789 460 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 537 (730)
=+.+ |-.+.+.|-.+.....++.+|.++|..+.|+|+. +|++++.|++|++|.+.+..++..++||..+|+++.|+|.
T Consensus 425 d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~ 504 (707)
T KOG0263|consen 425 DTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR 504 (707)
T ss_pred cccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC
Confidence 1122 3335566666777778899999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 004789 538 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 538 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~ 616 (730)
|-++||++.|++-++|.... ..++. ++.+|- +.|.|+.|+|+..|+++ +.|.++++||+.+|..++.|.+
T Consensus 505 GyYFatas~D~tArLWs~d~-----~~PlR-ifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDH-----NKPLR-IFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred ceEEEecCCCceeeeeeccc-----CCchh-hhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 99999999999999999987 46666 788998 79999999999999999 5999999999999999999964
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCc
Q 004789 617 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 696 (730)
Q Consensus 617 ~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~ 696 (730)
|.++|.+++|||+|++|++|++||.|.+||+.+++++..+. || .+.|+ ++.|+. +|..||+||.|.+
T Consensus 576 --H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg~Dns 642 (707)
T KOG0263|consen 576 --HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGGADNS 642 (707)
T ss_pred --CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecCCCCe
Confidence 79999999999999999999999999999999999998887 87 77788 999999 8999999999999
Q ss_pred EEEEeCCCCce
Q 004789 697 VHVIEPLESEV 707 (730)
Q Consensus 697 I~iWd~~~~~~ 707 (730)
|++||+.....
T Consensus 643 V~lWD~~~~~~ 653 (707)
T KOG0263|consen 643 VRLWDLTKVIE 653 (707)
T ss_pred EEEEEchhhcc
Confidence 99999976543
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-40 Score=325.13 Aligned_cols=269 Identities=19% Similarity=0.162 Sum_probs=242.8
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC--CCEEEEEeCCCcEEEeecCCCccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd--g~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
.+|+|++.||||+.+|.+++|+.... ...+++ .||++.|.++.|+|. +..+|+|+.||++++|++.+....
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l----~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTL----RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc---ceeEEE----eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 78999999999999999999999742 233333 369999999999996 568999999999999998776541
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
.. + .+|...|..++|+ |++|++++ |.+-++||+.++..+....+|...|.+++|
T Consensus 255 ~~---------------------l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 255 QD---------------------L--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF 311 (459)
T ss_pred hh---------------------h--hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence 11 1 1799999999999 99999999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
+||| .+++|+.|..-+|||+++|.++..+.+|...|.+|+|+|+|..||||+.|++++|||++.. ..+. +..+
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly-~ipA 385 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELY-TIPA 385 (459)
T ss_pred cCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccce-eccc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999984 3355 5667
Q ss_pred CCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 573 LVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 573 h~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
|. +-|+.+.|+| .|.+|++ +.|++++||...+..+++.+. +|.+.|.++.+++|++++++++.|.++++|.
T Consensus 386 H~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 386 HS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA--GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc--CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 87 7999999999 6888888 599999999999999999986 5799999999999999999999999999995
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.1e-38 Score=298.16 Aligned_cols=280 Identities=16% Similarity=0.221 Sum_probs=252.7
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
||.+.|.++.|++|+++|+++|.||.+.|||.-+... ...+. -...+|..++|+ |
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK------------------~haip-----l~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK------------------VHAIP-----LPSSWVMTCAYSPSG 109 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc------------------eeEEe-----cCceeEEEEEECCCC
Confidence 5999999999999999999999999999999654432 01111 257899999999 9
Q ss_pred cEEEEee-CCEEEEEEcCCc------eEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCe
Q 004789 457 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 529 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~------~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 529 (730)
+++|+|+ |+...||++.+. ...+.+.+|.+.+.|+.|.+|+.|+|++.|.+..+||+++++.+..|.+|.+.|
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 9999999 999999999865 455678899999999999997799999999999999999999999999999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC
Q 004789 530 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 607 (730)
Q Consensus 530 ~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~ 607 (730)
.++.++| +++.+++|+.|+..++||++.+ ...+ .+.+|+ ..|++++|.|+|.-+++| .|+++++||++.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCc-----ceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999 9999999999999999999994 4555 678888 799999999999999995 889999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 608 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 608 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
.+.+..+.......+|++++||..|++|++|..|.++.+||.-.++.+..+. || .+.|. ++..+| ||..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-------GH-eNRvS--cl~~s~-DG~a 329 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-------GH-ENRVS--CLGVSP-DGMA 329 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-------cc-CCeeE--EEEECC-CCcE
Confidence 9999999866668899999999999999999999999999999999998887 77 66688 899999 8999
Q ss_pred EEEEeCCCcEEEEe
Q 004789 688 IALGLTNGRVHVIE 701 (730)
Q Consensus 688 las~s~Dg~I~iWd 701 (730)
++|||.|..++||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-37 Score=288.43 Aligned_cols=291 Identities=17% Similarity=0.210 Sum_probs=248.4
Q ss_pred CCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
+|++.|..++..+.+ +.+++++.|.++.+|++.... .+.|..++.+. ||+..|..++.+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----------------~~~G~~~r~~~--GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----------------IKYGVPVRRLT--GHSHFVSDVVLSSD 74 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----------------cccCceeeeee--ccceEecceEEccC
Confidence 599999999999974 578899999999999987653 33444554443 799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC--CCCCeEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITC 531 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~V~~ 531 (730)
|++.++++ |+++++||+.+|+..+.|.+|...|.+++|++|+ .+++|+.|.+|.+||... .+..++.. +.+.|+|
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSC 153 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEE
Confidence 99999999 9999999999999999999999999999999999 999999999999999874 44445543 3799999
Q ss_pred EEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 004789 532 LAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 608 (730)
Q Consensus 532 l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~ 608 (730)
+.|+|+ ..+|++++.|+++++||+++ ..+.....+|. +.++.+++||||...++ +.||.+.+||++.+
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 999998 67999999999999999998 33444677888 89999999999999999 59999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEE
Q 004789 609 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 688 (730)
Q Consensus 609 ~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~l 688 (730)
+.+..+ .|...|.+++|+|+..+|+.+. +..|+|||+.++..+..+.+....+ +...+.+.++.++|++ +|..|
T Consensus 225 k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~tL 298 (315)
T KOG0279|consen 225 KNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQTL 298 (315)
T ss_pred ceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCcEE
Confidence 998777 4589999999999987777765 5559999999999888776543322 1223457788999999 89999
Q ss_pred EEEeCCCcEEEEeCC
Q 004789 689 ALGLTNGRVHVIEPL 703 (730)
Q Consensus 689 as~s~Dg~I~iWd~~ 703 (730)
.+|-.|+.|++|.+.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999875
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-36 Score=314.50 Aligned_cols=344 Identities=14% Similarity=0.176 Sum_probs=276.1
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCC--
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN-- 413 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~-- 413 (730)
....++.|.+++++|+.|-++|||.++.... .....+ .||++.|.++-|..+...+++.+.||.+.+|.....
T Consensus 149 ~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---~~~~~l--~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 149 TSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---LFTYAL--NGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPP 223 (893)
T ss_pred eEEEeccCCceEEeccccceEEEEEeccccc---cceEec--cCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCc
Confidence 3358999999999999999999999985332 333334 359999999999999999999999999999998711
Q ss_pred ----------------------ccccc------------ccccccee-------------------eEecCCCCeeEeec
Q 004789 414 ----------------------KQSLE------------EENVNMES-------------------QLYQPSSKLVMTND 440 (730)
Q Consensus 414 ----------------------~~~~~------------~~~~~~~~-------------------~i~~~~~~~~~~~~ 440 (730)
+.... ..+..... .+++..+-.+++..
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 00000 00000000 23333333333322
Q ss_pred ccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC
Q 004789 441 IAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 515 (730)
Q Consensus 441 ~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~ 515 (730)
. -...+|..++|+ |++||.|+ -|.+-||+..+...+.+.++|...+++++++||| ++++|+.||.|+|||..+
T Consensus 304 S--is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 304 S--ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred e--cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 2 134678899999 99999999 3899999999999999999999999999999999 999999999999999999
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 595 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s 595 (730)
|-|..++..|+..|+.+.|+..|+.+++.+.||+|+.||+.... ... .+....+ ....+++..|.|..+.+|
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-----NfR-Tft~P~p--~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-----NFR-TFTSPEP--IQFSCVAVDPSGELVCAG 453 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-----eee-eecCCCc--eeeeEEEEcCCCCEEEee
Confidence 99999999999999999999999999999999999999998743 333 2222222 457789999999999886
Q ss_pred -ecC-cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce-EEEEeecccccCCCCcccc
Q 004789 596 -HEG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLE 672 (730)
Q Consensus 596 -~dg-~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~~~gh~~~~ 672 (730)
.|. .|.+|++++|+.+..+. +|.++|.+++|+|+|..|++|++|.+|++||+-... .+.++.. ...
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sd 522 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSD 522 (893)
T ss_pred ccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccc
Confidence 444 49999999999998886 579999999999999999999999999999986542 3344432 223
Q ss_pred eeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 673 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 673 v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
+. +++|+| +|+.+|+++-||.|.+||+.++.+.
T Consensus 523 vl--~vsfrP-dG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 523 VL--AVSFRP-DGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ee--EEEEcC-CCCeEEEEEecceEEEEEhhhceee
Confidence 55 999999 8999999999999999999987654
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.7e-36 Score=282.36 Aligned_cols=278 Identities=15% Similarity=0.162 Sum_probs=240.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+++|.+.+++++.||.+.|||.-. +.+...+++ -...|..++|+|+|+++|+|+-|+...||++.+....
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl----~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~- 132 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPL----PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE- 132 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEccc---ccceeEEec----CceeEEEEEECCCCCeEEecCcCceeEEEeccccccc-
Confidence 57899999999999999999999863 445555555 5789999999999999999999999999998754220
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
....+.. ...+|.+.+.|+.|- +..|++++ |.++.+||+++|+.+..|.+|.+.|.+++++|
T Consensus 133 ---------------g~~~v~r-~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 133 ---------------GNVRVSR-ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ---------------ccceeee-eecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 0001111 112799999999999 88999999 99999999999999999999999999999999
Q ss_pred -CC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 496 -QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 496 -dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
++ .+++|+-|+..++||++.+.++++|.+|...|+++.|.|+|.-+++|+.|++.++||++......... |
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-------~ 269 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-------H 269 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-------c
Confidence 77 99999999999999999999999999999999999999999999999999999999999854332211 1
Q ss_pred CCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 574 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
.....+|++++||..|++|++| .|.++.+||.-.++.+..+. +|...|.++..+|||.-|++|++|..++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 1112579999999999999996 89999999998888887776 5799999999999999999999999999994
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-35 Score=295.61 Aligned_cols=352 Identities=15% Similarity=0.155 Sum_probs=268.9
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC----CcEEEeecCCC
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSN 413 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d----g~I~iWd~~~~ 413 (730)
.++||.|.++|+|+..|+|||||.... ....+.+++- ..++|..++|++|++++++.+.. |.+.+||--+.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~---~hiLKnef~v--~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S 139 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQK---EHILKNEFQV--LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS 139 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCc---ceeeeeeeee--cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence 589999999999999999999999742 3333333322 68999999999999999888763 56777876443
Q ss_pred ccccc-----c---------------ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEE
Q 004789 414 KQSLE-----E---------------ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 470 (730)
Q Consensus 414 ~~~~~-----~---------------~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vw 470 (730)
.-... . .+.++.+.+|+-..-++.... ..|..-|.|+.|+ |+++++++ ||+|.+|
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~--r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF--REHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc--cccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 22111 1 111122233433222222222 2688999999999 99999999 9999999
Q ss_pred EcCCceEEEEEc---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEE--------------------------
Q 004789 471 SLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-------------------------- 520 (730)
Q Consensus 471 d~~t~~~~~~~~---~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~-------------------------- 520 (730)
|-.+|+.+..+. +|.+.|.+++|+||+ .+++++.|.+++|||+.++++++
T Consensus 218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS 297 (603)
T KOG0318|consen 218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS 297 (603)
T ss_pred cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence 999999999998 899999999999999 99999999999999998765433
Q ss_pred -----------------EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc------eeec----------
Q 004789 521 -----------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------KFLH---------- 567 (730)
Q Consensus 521 -----------------~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~------~~i~---------- 567 (730)
.+.||...|+++..+||+++|++|+.||.|.-||..++..-.. ..+.
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 3458889999999999999999999999999999876532100 0000
Q ss_pred ----------cc-------------ccCCC---------------------------------CCCCCeEEEEEecCCcE
Q 004789 568 ----------SF-------------QTGLV---------------------------------PETTIVNHIQFHPDQIH 591 (730)
Q Consensus 568 ----------~~-------------~~~h~---------------------------------~~~~~v~~l~~spdg~~ 591 (730)
.+ ..++. +......+++++|++..
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 00 00000 00123457889999999
Q ss_pred EEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcc
Q 004789 592 LLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 592 l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 670 (730)
+++ +.|+.+++|.+..+..........|.++|++++||||+.+|++|...+.+.+||+.+.+.....- +-|.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FHt 530 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFHT 530 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------eeee
Confidence 999 59999999999776654443444689999999999999999999999999999999987633222 3346
Q ss_pred cceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
..|+ +++|+| +..++|||+-|-.|.||++..+.
T Consensus 531 akI~--~~aWsP-~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 531 AKIN--CVAWSP-NNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred eeEE--EEEeCC-CceEEEeccccceEEEEEccChh
Confidence 6788 999999 88999999999999999998764
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=279.37 Aligned_cols=281 Identities=14% Similarity=0.196 Sum_probs=246.5
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.||++.|+.+.|+|+|.+||+|+.|..|.+|++..... ..|-. .+|+++|..+.|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~l-----------kgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWVL-----------KGHSGAVMELHGMRD 101 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceeee-----------ccccceeEeeeeccC
Confidence 56999999999999999999999999999999765544 12221 1799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
++.+++++ |.+|+.||+++|++++.+++|..-|+++.-+.-| ++.+|+.|+++++||+++...++++. ....++++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 89999999 9999999999999999999999999999977777 88899999999999999998888875 46789999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC----
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT---- 607 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~---- 607 (730)
.|..++..+++|+-|+.|++||++.. ..+. +..||. +.|+.+..+|+|.++.+ +.|.++++||++.
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred EecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 99999999999999999999999873 3344 678998 89999999999999999 8999999999874
Q ss_pred CceeeeecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 608 LNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 608 ~~~~~~~~~~~h--~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
.+++..+.++.| ......++|+|++..+.+|+.|..+++||..+...+..+. || .+.|+ +++|+| ..
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-------Gh-~gsvn--~~~Fhp-~e 320 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-------GH-YGSVN--EVDFHP-TE 320 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-------Cc-ceeEE--EeeecC-CC
Confidence 345777776655 3456678999999999999999999999999988888876 87 55688 999999 78
Q ss_pred CEEEEEeCCCcEEEEe
Q 004789 686 NRIALGLTNGRVHVIE 701 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd 701 (730)
.+|.+++.|.+|++=+
T Consensus 321 ~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLGE 336 (338)
T ss_pred cEEEEeccCceeEeec
Confidence 9999999999998744
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-34 Score=267.12 Aligned_cols=287 Identities=14% Similarity=0.174 Sum_probs=236.8
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
+.-+||++|.|.+||+|... ++.|.+... . ..+.|+.+...||+++||+++. ..|++||+.++...
T Consensus 9 ~~viLvsA~YDhTIRfWqa~----tG~C~rTiq-h--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~------ 74 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQAL----TGICSRTIQ-H--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN------ 74 (311)
T ss_pred CceEEEeccCcceeeeeehh----cCeEEEEEe-c--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC------
Confidence 34688999999999999995 667755332 0 3568999999999998887754 58999999876541
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 498 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~ 498 (730)
.+..+ ++|...|.++.|. |+++++|+ ||+++|||++...+.+.+. |..+|+++..+|+. .
T Consensus 75 -------------Pv~t~--e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 75 -------------PVATF--EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE 138 (311)
T ss_pred -------------ceeEE--eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce
Confidence 11111 1799999999999 99999999 9999999999977766665 66999999999999 9
Q ss_pred EEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec-ceeecccccCCCCC
Q 004789 499 FAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPE 576 (730)
Q Consensus 499 l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~-~~~i~~~~~~h~~~ 576 (730)
|++|..+|.|++||+....+.+.+.. ....|.++...|||.+++.+...|..++|++-+..... ..++. .+..|.
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~-k~~ah~-- 215 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH-KFQAHN-- 215 (311)
T ss_pred EEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh-heeccc--
Confidence 99999999999999998877766643 45789999999999999999999999999997743221 23333 456677
Q ss_pred CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEE
Q 004789 577 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
+.+..+.+|||+++|++ +.|.+++||+..+. ........+|...++.++||.||.||++|+.|+.+++|++..++.+
T Consensus 216 -~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 -GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred -ceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 78999999999999999 59999999999877 3333333467899999999999999999999999999999999988
Q ss_pred EEeecccccCCCCccc
Q 004789 656 CQINLTAYAQPGTISL 671 (730)
Q Consensus 656 ~~~~~~~~~~~gh~~~ 671 (730)
..+. ||+..
T Consensus 294 ~qy~-------gh~K~ 302 (311)
T KOG0315|consen 294 RQYQ-------GHHKA 302 (311)
T ss_pred eecC-------Ccccc
Confidence 8887 88765
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-34 Score=271.26 Aligned_cols=271 Identities=17% Similarity=0.231 Sum_probs=227.0
Q ss_pred CCCeeEeecCCCcEEEEeecCCC-CCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 421 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~-~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~ 421 (730)
+.+.+++++.|.++.+|++.... ..+..++ .+ .||...|..+..++||++.+++|.|+++++||+.+++.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-~~--~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~------ 97 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVR-RL--TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES------ 97 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceee-ee--eccceEecceEEccCCceEEeccccceEEEEEecCCcE------
Confidence 46788999999999999997542 1222222 22 36999999999999999999999999999999887653
Q ss_pred ccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCC--CCCeEEEEEcCC
Q 004789 422 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFILLPQ 496 (730)
Q Consensus 422 ~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~--~~~v~~i~~spd 496 (730)
.+.+. +|...|.+++|+ ++.+++|+ |.+|++|++.. .+..++..+ .+.|+|+.|+|+
T Consensus 98 ---------------t~~f~--GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 98 ---------------TRRFV--GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred ---------------EEEEE--ecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCC
Confidence 11122 799999999999 78899999 99999999975 444455433 789999999999
Q ss_pred --C-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 497 --D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 497 --g-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
. .|++++.|++|++||+++.+....+.+|++.++.++++|||..+++|+.||.+.+||++.++ .++ . .++
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-----~ly-s-l~a 232 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-----NLY-S-LEA 232 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc-----eeE-e-ccC
Confidence 4 99999999999999999999999999999999999999999999999999999999999854 344 2 233
Q ss_pred CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004789 574 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h-------~~~v~~~~~spdg~~l~sgs~dg~I~i 646 (730)
. ..|.+++|+|+.-.|+.+.+..|+|||+.++.++..+..... .....+++|++||..|++|..|+.|++
T Consensus 233 ~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 233 F---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred C---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 3 589999999998888888888899999999988877765321 234677899999999999999999999
Q ss_pred EECC
Q 004789 647 FDTS 650 (730)
Q Consensus 647 wd~~ 650 (730)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9875
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=295.09 Aligned_cols=346 Identities=14% Similarity=0.174 Sum_probs=283.1
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCC--CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCC
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 413 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~--~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~ 413 (730)
....+||||+.+|.+.. +.+.||...+.... ++..+.+.. .||-+.|.++.|+.|.++|++||.|-++++|+++..
T Consensus 100 ~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred ceEEECCCCcEEEEEec-ceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence 44689999999998765 88999998754332 222222111 469999999999999999999999999999999876
Q ss_pred ccccc----c-------------------ccccceeeEecCC------------------------CCe--------eE-
Q 004789 414 KQSLE----E-------------------ENVNMESQLYQPS------------------------SKL--------VM- 437 (730)
Q Consensus 414 ~~~~~----~-------------------~~~~~~~~i~~~~------------------------~~~--------~~- 437 (730)
+.... . .+......+|... ..+ ..
T Consensus 178 k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 65221 1 1111223455432 000 01
Q ss_pred eecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC-CcEEEEe
Q 004789 438 TNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-SSILVHC 512 (730)
Q Consensus 438 ~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d-g~I~iwd 512 (730)
+.++ ......|++.+|+ -+.|++|- .|...+|++....+++.+.-....|..++|+..| +||.|+.. |.+-||+
T Consensus 258 k~~l-n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 258 KHYL-NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred eeee-cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 1111 1234789999999 55677776 8999999999999999999888999999999999 99888754 7999999
Q ss_pred cCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 513 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 513 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
.++...+-+.++|...+++++++|||+++|+|+.||.|+|||..++ .++. ++..|+ +.|+.+.|+..|+.+
T Consensus 337 WqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-----fC~v-TFteHt---s~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 337 WQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-----FCFV-TFTEHT---SGVTAVQFTARGNVL 407 (893)
T ss_pred eeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-----eEEE-EeccCC---CceEEEEEEecCCEE
Confidence 9999999999999999999999999999999999999999999984 6666 667787 799999999999999
Q ss_pred EE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEeecccccCCCCcc
Q 004789 593 LS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 593 ~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 670 (730)
++ +-||+|+.||+...+..+++..+ ......+++..|.|.++++|+.|. .|++|++.+|+++..+. || .
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-------GH-E 478 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-------GH-E 478 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-------CC-C
Confidence 99 69999999999999999999874 366677888889999999999884 69999999999999887 87 7
Q ss_pred cceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
++|. +++|+| ++..|||+|.|.+||+|++-..
T Consensus 479 gPVs--~l~f~~-~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 479 GPVS--GLSFSP-DGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred Ccce--eeEEcc-ccCeEEeccccceEEEEEeecc
Confidence 7899 999999 8999999999999999999766
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=305.16 Aligned_cols=382 Identities=14% Similarity=0.165 Sum_probs=295.3
Q ss_pred HHhhhh----cccccceeecCCCce-------eceecccccceeEEEEeeccCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 004789 265 QIMDWW----VPYCINVMPNANNET-------ISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 333 (730)
Q Consensus 265 ~~~~~~----~p~c~~~~~s~dg~~-------~~v~~~d~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 333 (730)
-|+.|. +|- ..|+|.|-|.. ..|..||...+.... .|.++.
T Consensus 96 ~irswKa~He~Pv-i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---------------------------~fkG~g 147 (775)
T KOG0319|consen 96 LIRSWKAIHEAPV-ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---------------------------SFKGHG 147 (775)
T ss_pred HhHhHhhccCCCe-EEEEEcCCCceEEeccccceEEEEEeeCCEEEE---------------------------EecCCC
Confidence 345555 553 34778777753 344556666555554 233333
Q ss_pred CCccc-CCCCCC--CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeec
Q 004789 334 QSRES-TSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 410 (730)
Q Consensus 334 ~~~~~-~~spdg--~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~ 410 (730)
|.... .|-|+- ..|++|+.|+++++||+..... ....+. .|.+.|++++|++|+..++++|.|..+.|||+
T Consensus 148 GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~----~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 148 GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMI----LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred ceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHH----hhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 33443 455554 5589999999999999975332 112222 39999999999999999999999999999998
Q ss_pred CCCccccc-------------cc------------cccc-----------------------------------------
Q 004789 411 QSNKQSLE-------------EE------------NVNM----------------------------------------- 424 (730)
Q Consensus 411 ~~~~~~~~-------------~~------------~~~~----------------------------------------- 424 (730)
...+.... .. ....
T Consensus 222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 65433221 00 0000
Q ss_pred ---------------------------------------------eeeEecCCCCeeEeecccCCCCCCeeEEE-Ee-Cc
Q 004789 425 ---------------------------------------------ESQLYQPSSKLVMTNDIAADPKDSISCFA-LR-GS 457 (730)
Q Consensus 425 ---------------------------------------------~~~i~~~~~~~~~~~~~~~~h~~~V~~l~-~s-~~ 457 (730)
..++++..+..+. +..+|+..|.++. |+ |.
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCc
Confidence 0044443333332 2237999999999 55 88
Q ss_pred EEEEee-CCEEEEEEcCCc----eEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCce-----EE----E
Q 004789 458 HLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-----KA----K 521 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~----~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~-----~~----~ 521 (730)
+|++|+ |.++++|.++.+ .++....+|.+.|.+++++..+ .|+++|.|+++++|++...+. .. +
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 999999 999999988543 3456677999999999998888 999999999999999876221 11 2
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 600 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I 600 (730)
...|...|++++++|+.+.++|||.|++.++|++.. ..+..++.||. ..|.++.|+|..+.+++ +.|++|
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~------~~l~~vLsGH~---RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ------LRLLGVLSGHT---RGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccC------ceEEEEeeCCc---cceEEEEeccccceeEeccCCceE
Confidence 245999999999999999999999999999999996 23333788998 79999999999999999 599999
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 601 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 601 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
+||.+.+..+++++. +|...|..+.|-.+|+.|++++.||.|++|++.+++++..+. +| ...|| +++-
T Consensus 530 KIW~is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H-~DrvW--aL~~ 597 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AH-NDRVW--ALSV 597 (775)
T ss_pred EEEEeccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hc-cceeE--EEee
Confidence 999999999999996 479999999999999999999999999999999999999998 55 66799 8888
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 681 HPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+| ...+++||+.||.|.+|.=.+.
T Consensus 598 ~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 598 SP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cC-ccceeEecCCCeEEEEeecCcH
Confidence 88 7789999999999999986554
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.9e-34 Score=262.81 Aligned_cols=269 Identities=14% Similarity=0.169 Sum_probs=226.6
Q ss_pred CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEE
Q 004789 394 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS 471 (730)
Q Consensus 394 ~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd 471 (730)
-+|+++|.|.+|++|...++.+ ..++. ...+.|+.+... ++.||+++...|++||
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C---------------------~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD 67 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC---------------------SRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD 67 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE---------------------EEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence 3789999999999987766655 33322 456789999999 7789999999999999
Q ss_pred cCCce--EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC
Q 004789 472 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 548 (730)
Q Consensus 472 ~~t~~--~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg 548 (730)
++++. ++.++.+|...|+++.|..+| .+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|
T Consensus 68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 98865 688999999999999999999 99999999999999999977766666 789999999999999999999999
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc------eeeeecCCCCCC
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------HTSQLVPDKMDL 621 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~------~~~~~~~~~h~~ 621 (730)
.|++||+....... .+ +++.. ..|.++...|||+++++. ..|.+++|++-+.. ++..+. .|.+
T Consensus 147 ~irvWDl~~~~c~~--~l--iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTH--EL--IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG 216 (311)
T ss_pred cEEEEEccCCcccc--cc--CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence 99999998843211 11 22222 479999999999999996 78999999987643 333443 4689
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEE
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 700 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iW 700 (730)
.+..+.+|||+++|++++.|.+++||+.++- +....+. || ...++ .++||. |+.+|+||+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999887 4444444 66 67899 999999 89999999999999999
Q ss_pred eCCCCce
Q 004789 701 EPLESEV 707 (730)
Q Consensus 701 d~~~~~~ 707 (730)
++..++.
T Consensus 286 ~~~~~k~ 292 (311)
T KOG0315|consen 286 DLSAGKE 292 (311)
T ss_pred ccccCce
Confidence 9999973
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-34 Score=299.21 Aligned_cols=346 Identities=14% Similarity=0.167 Sum_probs=275.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
...+||++.|++++..+.+++|+++.. .+.+.-- ..|+++|.-++|+|.|..|++|+.|+.++|||+..+.+..
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tg----k~irswK--a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTG----KLIRSWK--AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccc----hHhHhHh--hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 478999999999999999999999743 3222111 1299999999999999999999999999999999887765
Q ss_pred c--c---------------------ccccceeeEecCCCCee-EeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEE
Q 004789 418 E--E---------------------ENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 470 (730)
Q Consensus 418 ~--~---------------------~~~~~~~~i~~~~~~~~-~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vw 470 (730)
. + ...+...++|+..+... ..... .|.+.|++++++ +..+++++ |..+.+|
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~--~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMI--LHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHH--hhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 3 1 11222348898875543 33322 688999999988 66666666 7777777
Q ss_pred EcCCceEE------------------------------------------------------------------------
Q 004789 471 SLETFQTL------------------------------------------------------------------------ 478 (730)
Q Consensus 471 d~~t~~~~------------------------------------------------------------------------ 478 (730)
|+.+.+..
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 75421100
Q ss_pred -----------------------------------------------------------EEEcCCCCCeEEEEEcCCC-e
Q 004789 479 -----------------------------------------------------------ATFANPPPIATYFILLPQD-L 498 (730)
Q Consensus 479 -----------------------------------------------------------~~~~~~~~~v~~i~~spdg-~ 498 (730)
..+.+|...|.+++...+| +
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 1224778888888877788 9
Q ss_pred EEEEECCCcEEEEecCCC----ceEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceeccee---ecccc
Q 004789 499 FAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKF---LHSFQ 570 (730)
Q Consensus 499 l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~---i~~~~ 570 (730)
|++|+.|+++++|.++.+ .++....+|.+.|.+++++..+ .+++++|.|+++++|++...+...... .+.+.
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 999999999999987544 3456668899999999997655 689999999999999998732221111 11234
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
..|. ..|++++++|+.+.+++ +.|.+.+||++.+.....++. +|...|+++.|+|..+.++++|.|++|+||.+
T Consensus 460 ~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 460 RAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred Hhhc---ccccceEecCCCceEEecccccceeeecccCceEEEEee--CCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 5676 68999999999999999 599999999999888888887 47999999999999999999999999999999
Q ss_pred CCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 650 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 650 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
.+..+++++. || ...|. .+.|-. ++++|+||+.||-|++|++.+.++
T Consensus 535 s~fSClkT~e-------GH-~~aVl--ra~F~~-~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 535 STFSCLKTFE-------GH-TSAVL--RASFIR-NGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred ccceeeeeec-------Cc-cceeE--eeeeee-CCcEEEeccCCCcEEEEeccchhh
Confidence 9999999998 88 44566 888888 899999999999999999998864
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-33 Score=281.21 Aligned_cols=324 Identities=13% Similarity=0.113 Sum_probs=251.9
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
+.+++|||..+|+++.||+|.+||-.... ....+. ...+|++.|.+++|+||++.++++|.|.+++|||+.+..+.
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge---~vg~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGE---KVGELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCcc---EEEEec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 35899999999999999999999986322 222222 12469999999999999999999999999999999887653
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
.. |...+. -...-..+-|.+..|++.+ +|+|.+++...+.....+.+|...|+++..+|
T Consensus 271 ~t----------~~~~~~----------v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 271 ST----------WPMGST----------VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EE----------eecCCc----------hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 22 221110 1122223445577888888 99999999999999999999999999999999
Q ss_pred CC-eEEEEECCCcEEEEecCCCceE-----------EEEcC---------------------------------------
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTK-----------AKLKG--------------------------------------- 524 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~-----------~~~~~--------------------------------------- 524 (730)
++ .|++|+.||.|.-||..+|..- ..+..
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence 99 9999999999999998765311 00000
Q ss_pred -----------------------C--------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 525 -----------------------H--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 525 -----------------------h--------~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
+ .....+++++|+++.++.|+.|+.|++|.+..++.... . ....|
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---~-~~~~h 486 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---A-KLLEH 486 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce---e-eeecc
Confidence 0 01134688999999999999999999999988553211 1 23455
Q ss_pred CCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 574 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
. ++|+++++|||+.+|+++ ..+.+.+||+.+.+.....- .-|...|.+++|+|+..++|+|+-|..|.||++...
T Consensus 487 ~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 487 R---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred c---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 5 799999999999999997 77899999998887632222 237999999999999999999999999999999876
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
...-.+. +.|...|+ .+.|-. ...+++.+.|..|++|++.
T Consensus 563 ~~~i~ik-------nAH~~gVn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 563 AKHIIIK-------NAHLGGVN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred hhheEec-------cccccCce--eEEEec--CceEEeccCcceeEEeccc
Confidence 5443333 33354588 999964 6899999999999999874
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.5e-35 Score=295.08 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=242.2
Q ss_pred CCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 378 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
+||+..|.++.|.| .+.+|++++.|+.|+||++- + .+.+++++. +|..+|.+++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy------------------~--~~~~lrtf~--gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY------------------D--DRRCLRTFK--GHRKPVRDASFNN 268 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe------------------c--Ccceehhhh--cchhhhhhhhccc
Confidence 57999999999999 89999999999999999863 3 345666665 899999999999
Q ss_pred -CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
|..+.+++ |+.|++||++||+++..+. ....++|+.|+||+ .+++|+.|+.|+.||+++++.++.+..|-+.|..
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 99999999 9999999999999999986 34467899999999 8999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc-
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN- 609 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~- 609 (730)
+.|-++|+.+++.+.|+++++|+.+.....+ .+. ....| ...++..+|++.++++ +.|+.|.+|.+...-
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~-~~~~h-----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIA-DPEMH-----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccch--hhc-chhhc-----cCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 9999999999999999999999998843221 111 12222 4668999999999999 899999999865322
Q ss_pred --eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 610 --HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 610 --~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
..+.+.++.-.+.-..+.|||||.+|++|+.||.+++||.++-+++..+. .| ++.+. .+.|||.....
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah-~~~ci--~v~wHP~e~Sk 489 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AH-DQPCI--GVDWHPVEPSK 489 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cC-CcceE--EEEecCCCcce
Confidence 22344443336777889999999999999999999999999999988887 44 56666 99999988889
Q ss_pred EEEEeCCCcEEEEe
Q 004789 688 IALGLTNGRVHVIE 701 (730)
Q Consensus 688 las~s~Dg~I~iWd 701 (730)
+|||+.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=289.23 Aligned_cols=279 Identities=17% Similarity=0.222 Sum_probs=240.7
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 458 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~ 458 (730)
...|..|.|.|+|+.|++|+..|.+.+|+..+-.. ..++ ..|..+|+++.|+ |.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF------------------Etil-----QaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF------------------ETIL-----QAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH------------------HHHh-----hhhcccceeEEEccCCCE
Confidence 56899999999999999999999999998632211 1122 2699999999999 999
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEe
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 535 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 535 (730)
+++|+ +|.|++|+..-.. ++.+. .|...|++++|+|++ .|++++.||+|+|||....+....+.+|.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999 9999999986443 34444 455899999999999 99999999999999999998888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~ 614 (730)
|.-..+++|+.|..|++||.+++. ++. ...+|. ..|..+.|+|++.+|++ |.|..+++||+++.+.++++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~-----cl~-tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGS-----CLA-TLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcc-----hhh-hhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 999999999999999999999964 444 456677 79999999999999999 69999999999988888888
Q ss_pred cCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 615 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 615 ~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
++ |...+++++|+| ...+|.+|+.||.|..|.+...+++..+.. +| ...|+ +++||| -|..|++|+.
T Consensus 303 r~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~------AH-d~~iw--sl~~hP-lGhil~tgsn 370 (464)
T KOG0284|consen 303 RG--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP------AH-DGEIW--SLAYHP-LGHILATGSN 370 (464)
T ss_pred hc--chhhheeeccccccccceeeccCCCceEEEeccccccccCCCc------cc-cccee--eeeccc-cceeEeecCC
Confidence 74 699999999998 567888999999999999986666655542 55 77799 999999 7999999999
Q ss_pred CCcEEEEeCCC
Q 004789 694 NGRVHVIEPLE 704 (730)
Q Consensus 694 Dg~I~iWd~~~ 704 (730)
|.++++|.-.-
T Consensus 371 d~t~rfw~r~r 381 (464)
T KOG0284|consen 371 DRTVRFWTRNR 381 (464)
T ss_pred CcceeeeccCC
Confidence 99999998653
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=258.95 Aligned_cols=288 Identities=18% Similarity=0.215 Sum_probs=233.5
Q ss_pred CCCCcEEEEEEecC-CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspd-g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
||++.|+.++|+|- |..||++|.|+.|++|+...+.. | ..+..+.++|+..|++++|+
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~------~ck~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------W------TCKTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------E------EEEEeccccchheeeeeeecCC
Confidence 59999999999998 99999999999999999864221 1 11222334799999999999
Q ss_pred CcEEEEee-CCEEEEEEcC--CceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC---ceEEEEcCCCCC
Q 004789 456 GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR 528 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~--t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~ 528 (730)
|++|++|+ |.++.||.-. +.+++.++.+|...|.|++|+++| +||+++.|++|.||.+..+ ++...++.|...
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 99999999 9999999875 357899999999999999999999 9999999999999998754 678889999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 606 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~-~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~ 606 (730)
|..+.|+|...+|++++.|.+|++|+-. ... ....+ .+.+|. +.|.+++|++.|..|+++ .|++++||-..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd---W~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD---WECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCC---eeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9999999999999999999999999876 322 23344 567777 689999999999999984 89999999865
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
+ .+. ..|...++.+.|. ...|++++.|+.|++|.-...-....+..... ..+.|...|+ +|.|+|...+
T Consensus 226 ~-----~~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVN--sV~w~p~~~~ 294 (312)
T KOG0645|consen 226 T-----DLS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVN--SVQWNPKVSN 294 (312)
T ss_pred c-----Ccc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccc--eEEEcCCCCC
Confidence 2 222 2457889999998 45899999999999998664311111111100 1133455788 9999995578
Q ss_pred EEEEEeCCCcEEEEeCC
Q 004789 687 RIALGLTNGRVHVIEPL 703 (730)
Q Consensus 687 ~las~s~Dg~I~iWd~~ 703 (730)
+|++|++||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999875
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-34 Score=274.95 Aligned_cols=288 Identities=16% Similarity=0.220 Sum_probs=248.3
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.||.+.|.|+++.|..+++++|+.|++|+|||+.+++.. .. ..+|...|..++++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---------------------lt--ltGhi~~vr~vavS~r 204 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---------------------LT--LTGHIETVRGVAVSKR 204 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---------------------Ee--ecchhheeeeeeeccc
Confidence 469999999999999999999999999999998887751 11 12799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
-.|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|.++.
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 88999999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~ 613 (730)
+.|-...+++|+.|++|++||++.++. .. ....|. ..|.+++.+|....++++....|+-|++..+..+..
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt-----~~-tlt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKT-----MI-TLTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCce-----eE-eeeccc---ceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 999888999999999999999998642 22 344565 689999999999889888777899999999998888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc--ccceeeEEEEEecCCCCEEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI--SLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~--~~~v~~~~v~~sp~~~~~las~ 691 (730)
+. +|..-+.+++...|| ++++|+++|.+.+||.++|...+.... .+..|.- ...|+ +.+|.. .+..|+||
T Consensus 356 ls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGSl~sEagI~--as~fDk-tg~rlit~ 427 (460)
T KOG0285|consen 356 LS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGSLESEAGIF--ASCFDK-TGSRLITG 427 (460)
T ss_pred cc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc--cccCCcccccccee--EEeecc-cCceEEec
Confidence 65 568899999988776 788999999999999999865544421 1111321 23356 889988 78999999
Q ss_pred eCCCcEEEEeCCCC
Q 004789 692 LTNGRVHVIEPLES 705 (730)
Q Consensus 692 s~Dg~I~iWd~~~~ 705 (730)
..|.+|++|.-.+.
T Consensus 428 eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 428 EADKTIKMYKEDEH 441 (460)
T ss_pred cCCcceEEEecccc
Confidence 99999999987654
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=268.05 Aligned_cols=318 Identities=14% Similarity=0.193 Sum_probs=260.9
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+..|+.+.+|||+.|....||+.... . ....+ .||++.|+++.||.||.+||+|+.+|.|+||+..++..
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~g----e-~~~el--tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-- 140 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTG----E-FAGEL--TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-- 140 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCC----c-ceeEe--cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--
Confidence 678899999999999999999999742 2 22223 35999999999999999999999999999999887764
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
.|... ..-..|.=+.|+ +..|+.|+ ||.+.+|.+.++...+.+.+|..++++-.|.
T Consensus 141 ----------~~~~~-----------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 141 ----------QWKLD-----------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred ----------EEEee-----------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 12110 134556677888 88899999 9999999999988999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee--ecccc
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSFQ 570 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~--i~~~~ 570 (730)
|+| ++++|..||+|++||+.+++++..+.+ ......++.++.++..++.|+.++.+++-+..+++.+.... ...+.
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 999 999999999999999999999988864 34567788999999999999999999999888876543221 11122
Q ss_pred cCCCCCCCCeEEEEE---ecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004789 571 TGLVPETTIVNHIQF---HPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~---spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~i 646 (730)
..+. ..+.++.+ +..=...|+| -||+|.|||+...+..+.. .|...|+.+.|-+ ..+|++++.||.|+.
T Consensus 280 ~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 280 PSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred ccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCCceEEEEEcC-cchheeeccCceEEe
Confidence 2333 34444544 4455556664 8999999999887776555 3688899999998 789999999999999
Q ss_pred EECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 647 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 647 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
||.++|++...+. || ...|. +++++| +.++++|+|.|++.+||++.
T Consensus 353 wDaRtG~l~~~y~-------GH-~~~Il--~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYT-------GH-QMGIL--DFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEe-------cC-chhee--EEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999887 87 55577 999999 89999999999999999874
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-33 Score=273.07 Aligned_cols=279 Identities=18% Similarity=0.187 Sum_probs=247.4
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
||..+|+.+.|+|+-..+++++.|++|++||..+++.... +.+|...|..++|+ |
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-----------------------LrGHt~sv~di~~~a~G 162 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS-----------------------LRGHTDSVFDISFDASG 162 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh-----------------------hhccccceeEEEEecCc
Confidence 5999999999999999999999999999999988775211 11799999999999 9
Q ss_pred cEEEEee-CCEEEEEEcCC-ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 457 SHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t-~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
+++++++ |=.+++||..+ .++++.+.+|...|.+++|-|.| ++++++.|.+|+.|++.+|-+++++.+|...|..+.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 9999999 87799999987 67888888999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---------------CcEEEE-Eec
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLS-IHE 597 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd---------------g~~l~~-s~d 597 (730)
.+.||..+++++.|.++++|-+.+++. .. ...+|+ -+|.+++|.|. +.++.+ +.|
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~~~-----k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATKQC-----KA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccchh-----hh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 999999999999999999999998432 22 345666 57888888763 246666 599
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEE
Q 004789 598 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
++|++||+.++.++.++. +|...|..++|+|.|+||+++.+|+++++||+.++++...+.++ ..-|. +
T Consensus 314 ktIk~wdv~tg~cL~tL~--ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~hfvt--~ 381 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLV--GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------EHFVT--S 381 (406)
T ss_pred ceEEEEeccCCeEEEEEe--cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------cceeE--E
Confidence 999999999999999986 47999999999999999999999999999999999998888743 55567 8
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 678 IAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 678 v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
++|+. +..+++||+-|.++++|.-
T Consensus 382 lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCC-CCceEEeccccceeeeeec
Confidence 99998 6789999999999999974
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=283.40 Aligned_cols=273 Identities=18% Similarity=0.215 Sum_probs=235.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
...+|+|+.|++|+..|.+.||+..... ..+.+ ..|.+.|.++.|+++|.++++|+.+|.|++|+..-...
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fn-----FEtil--QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-- 172 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFN-----FETIL--QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-- 172 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceee-----HHHHh--hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh--
Confidence 4789999999999999999999984211 11122 23999999999999999999999999999998654322
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
++.+ ..|...|++++|+ +..+++++ ||+|+|||....+....+.+|.-.|.+++|+
T Consensus 173 ---------k~~~------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 173 ---------KIIQ------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred ---------HHhh------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 1111 1466999999999 88899999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
|.- .+++|+.|+.|++||.++|.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++. +.+. ...+|
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~-~~r~H 305 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELF-TYRGH 305 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHH-Hhhcc
Confidence 999 9999999999999999999999999999999999999999999999999999999999962 3444 56788
Q ss_pred CCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 574 VPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~--s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
. ..|+++.|+|-..-|++ |.||.|..|.+...+++..+. ..|...|++++|+|=|..|++|+.|.++++|...
T Consensus 306 k---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 306 K---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred h---hhheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 8 79999999996555554 599999999997666665554 3689999999999999999999999999999754
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=300.03 Aligned_cols=288 Identities=25% Similarity=0.325 Sum_probs=245.6
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|...|.++.|+++|+++++++.|+.+++|+...... .+.+.. .+|...|.+++|+ +.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~l--~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLREL--SGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhccc--cccccceeeeEECCCCc
Confidence 588999999999999999999999999999854431 011111 2799999999999 88
Q ss_pred EEEEee-CCEEEEEEc-CCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 458 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~-~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
++++++ |++|++||+ ..+..++++.+|...|++++|+|+| .+++|+.|++|++||+++++++..+.+|.+.|++++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999 999999999 6669999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~ 613 (730)
++++++|++++.|+.|++||+.++... .+. ...++.... .+++++|+|++.+++++ .|+.+++||+..+..+..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 999999999999999999999996532 223 334444211 68999999999999995 778999999999999988
Q ss_pred ecCCCCC-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 614 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 614 ~~~~~h~-~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
+..+... ..+.+...++.+.++++|+.|+.|++|++.++..+..+. ||....+. .++|+| ..+++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLIASSS 441 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCeeeecC
Confidence 8764322 245556667899999999999999999999988888877 66344456 899999 789999998
Q ss_pred --CCCcEEEEeCC
Q 004789 693 --TNGRVHVIEPL 703 (730)
Q Consensus 693 --~Dg~I~iWd~~ 703 (730)
.|+.|++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 79999999864
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-32 Score=273.03 Aligned_cols=272 Identities=15% Similarity=0.139 Sum_probs=238.4
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
...+.+-||..||+|+.||.+|||+..+ .....+- .|+++|.++.|+.+|+||++++.|+++.+||..++..
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~----~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLG----QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhh----ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 3357889999999999999999999963 3333332 3999999999999999999999999999999766554
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
.+.+. -|..+-..+.|- ...+++++ |+.|+|+.+....++.++.+|.+.|.++.|
T Consensus 311 ---------------------~q~f~--~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 311 ---------------------KQQFE--FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred ---------------------EEeee--eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 12111 366666788998 78888888 999999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCC---------CEEEEEeCCCcEEEEEcCCCceecc
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~---------~~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
+|.| +|++++.|++++||..........+.+|...|..+.|+|+| ..+++++.|++|++||+..+
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----- 442 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----- 442 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-----
Confidence 9999 99999999999999999999999999999999999999965 46899999999999999985
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 642 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg 642 (730)
.++. .+..|. .+|++++|+|+|+++|+| .||.|.+|+.++++..+.+.. .+.|..++|+.+|..|.++..||
T Consensus 443 v~i~-~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 443 VPIH-TLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred ceeE-eeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCC
Confidence 4555 455676 699999999999999996 899999999999999999865 77799999999999999999999
Q ss_pred eEEEEECC
Q 004789 643 HVKVFDTS 650 (730)
Q Consensus 643 ~I~iwd~~ 650 (730)
.+++-|++
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99999875
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=250.02 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=233.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
.|.++|.++.|+-||+|.++++.|.+|++|+... |.+++++. +|...|..++.+ +
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r---------------------g~liktYs--ghG~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR---------------------GALIKTYS--GHGHEVLDAALSSDN 71 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccc---------------------cceeeeec--CCCceeeeccccccc
Confidence 3899999999999999999999999999987544 44555544 799999999988 6
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC--ceEEEEcCCCCCeEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCL 532 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l 532 (730)
..|++|+ |..|.+||+++|+.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.++. ++++.+....+.|.++
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 6788888 9999999999999999999999999999999999 9999999999999998875 7888888888999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 611 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~ 611 (730)
..+ +..+++|+.||+++.||++.|.... -..+ .+|++++|++|++..++ +-|+++++.|-.+|+.+
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~s------Dy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSS------DYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeeh------hhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 886 5579999999999999999864321 1233 47999999999999888 58999999999999999
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
+.+.++.....-..++++.....+++|++||.|++||+.....+..+.. .+.|.+..++++|. ..-|+++
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---------~~~v~v~dl~~hp~-~~~f~~A 288 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---------VSTVIVTDLSCHPT-MDDFITA 288 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---------CCceeEEeeecccC-ccceeEe
Confidence 9998765556666778888888999999999999999999988877753 22355559999994 4555555
Q ss_pred eCCCcEEEEeCC
Q 004789 692 LTNGRVHVIEPL 703 (730)
Q Consensus 692 s~Dg~I~iWd~~ 703 (730)
+ ++.+..|.-.
T Consensus 289 ~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 289 T-GHGDLFWYQE 299 (307)
T ss_pred c-CCceeceeeh
Confidence 4 4556677543
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-32 Score=291.04 Aligned_cols=505 Identities=16% Similarity=0.185 Sum_probs=333.4
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch--------HHHHH--------------------------HH--HhCC
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN--------VHRFG--------------------------EI--VMNG 56 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~~g 56 (730)
++++++++++||...||+.+-..|.+|.++..- ...+| .+ ++.-
T Consensus 21 ~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 100 (707)
T KOG0263|consen 21 TRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVEKA 100 (707)
T ss_pred hHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhhhc
Confidence 788999999999999999999999999875442 11221 00 0111
Q ss_pred C---------HHHHHHHhcccccccCCccc---cchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHH
Q 004789 57 E---------WEKAEKYLSAFTKLDDSNHS---KKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELA 124 (730)
Q Consensus 57 ~---------w~~~~~~l~~~~~~~~~~~~---~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~ 124 (730)
. ++.+...|+-+..-..+.++ .+++|.|+-|.||+|+.++..+.|..|+.+.---++.++.+.+.+|.
T Consensus 101 ~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~~l~ 180 (707)
T KOG0263|consen 101 LWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIFQLL 180 (707)
T ss_pred cccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 1 22222222222111111111 13899999999999999999999999999853333566888888888
Q ss_pred HHhccccccccccccCCCC---ChhhHHHHHHHHHHhhhccccccccccCCCCchhHHHHHHHhhCC--CCCC-Cccchh
Q 004789 125 ELLALKDLRENEQLSGYTN---ATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICP--SFEK-ETKEEL 198 (730)
Q Consensus 125 ~ll~~~~~~~~~~~~~~~~---~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~~~~rL~~ll~q~~~--~~~~-~~~~~~ 198 (730)
.+-+..++.+++....+.. ...--...++.|.+++.++.. +..+-+..+++|.|- -|+. ..+...
T Consensus 181 ~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~r~~~ 251 (707)
T KOG0263|consen 181 SLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMARRTT 251 (707)
T ss_pred hhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccccccc
Confidence 8887777666655443311 222233556677777777555 666788888898771 0000 000000
Q ss_pred hhhcccCCChhh--------hhhcccccCCCCcccc--c-----cc-------------ccccccccccccC---c--cc
Q 004789 199 IYLIHQFLNEEE--------FKETLHKQQKLPSDFA--E-----RA-------------HLFDDFKVLVERN---P--ML 245 (730)
Q Consensus 199 ~~~~h~~~~~~~--------~~~~~~~~~~~~~~~~--~-----~~-------------sl~~d~~~~~~~~---p--~~ 245 (730)
.+..-.-...+. .+-+..+-+.+|+++. . ++ ..++.+.+..++. | ..
T Consensus 252 ~~~~~~g~~~~~i~g~~~~e~~~~~~~l~~~~~e~~~~~~~~~~~e~~D~~~~~~~~~~~~~~~~~~~~~~k~~d~~~ps 331 (707)
T KOG0263|consen 252 KPTAMVGSEQESIAGEAKREINKQKVQLGLLLKEEEIEKKLPILLEVEDDPNEPDNEKLKKPKKKKLLSEEKKRDPNAPS 331 (707)
T ss_pred cchhhcccccccccccchhhcccceeeecccccchhhhhcccccccCccccccccccccccchhhhhhhhhhccccCCCc
Confidence 011000000000 0011111122222110 0 00 0000000000000 0 00
Q ss_pred cccccCCCCChhhHH-HHHHHHhhhhcccccceeecCCCceeceecccccceeEEEEeeccCCCCCCCCCCCCCCCCCCC
Q 004789 246 QDKLKFPSMDKSRLL-SLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN 324 (730)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~~~~~~~~~~p~c~~~~~s~dg~~~~v~~~d~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 324 (730)
++.| --||-++..+ ..+..++.+ +.++.++ ++..
T Consensus 332 ~d~i-PlPp~~~~d~~~~~~~l~d~----~kr~~l~----------------------------------------~~~l 366 (707)
T KOG0263|consen 332 RDRI-PLPPLKQVDKLAELEALKDE----QKRVKLG----------------------------------------RNSL 366 (707)
T ss_pred cccC-CCCcccchhHHHHHHHHHHH----HHHhhcC----------------------------------------CCCC
Confidence 1111 1122222111 111111111 1111111 1111
Q ss_pred CCCcc----CCCCCCcccCCCCCCCeeEeecCCCcEEEEeecCCC----------------------------CCcceee
Q 004789 325 DSSCF----NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN----------------------------EPSECRT 372 (730)
Q Consensus 325 ~~~~~----~~~~~~~~~~~spdg~~lat~~~dg~i~lWd~~~~~----------------------------~~~~~~~ 372 (730)
++-|+ |++.+..+..+|+|+.++|.|-.|..|++|.+.... ..+....
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 22222 344555667899999999999999999999987311 0011111
Q ss_pred eecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEE
Q 004789 373 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 452 (730)
Q Consensus 373 ~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l 452 (730)
+ .||+++|..+.|+|+.++|+++|.|+++++|.+.+..+.. +| . +|..+|+++
T Consensus 447 --L--~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V----------~y-----------~--GH~~PVwdV 499 (707)
T KOG0263|consen 447 --L--YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV----------IY-----------K--GHLAPVWDV 499 (707)
T ss_pred --e--ecCCCceeeeeecccccceeeccCCcceeeeecccceeEE----------Ee-----------c--CCCcceeeE
Confidence 2 4799999999999999999999999999999988766511 11 1 799999999
Q ss_pred EEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCC
Q 004789 453 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 453 ~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
.|+ |-|+|+++ |++-++|......+.+.+.+|-+.|.|+.|+|++ ++++||.|.+|++||+.+|..++.|.||.++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 999 99999999 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 607 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~ 607 (730)
|.+++|+|+|++|++|+.||.|.+||+.+++ .+. ...+|+ +.|.++.|+.+|..|++ |.|++|++||+..
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-----~v~-~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGS-----LVK-QLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCc-----chh-hhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999954 333 466776 89999999999999999 5999999999864
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5e-31 Score=310.95 Aligned_cols=317 Identities=13% Similarity=0.145 Sum_probs=242.8
Q ss_pred CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCC
Q 004789 353 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 432 (730)
Q Consensus 353 dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~ 432 (730)
+|.+++|+............-.+ .+|.+.|++++|+|+|++||+|+.|+.|+||+......... +..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~~~ 523 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------DIH 523 (793)
T ss_pred hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------ccc
Confidence 57788888763221111110001 23899999999999999999999999999999754211000 000
Q ss_pred CCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC-CC-eEEEEECCC
Q 004789 433 SKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDS 506 (730)
Q Consensus 433 ~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp-dg-~l~sgs~dg 506 (730)
..... . .+...|.+++|+ +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.|+
T Consensus 524 --~~~~~-~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 524 --YPVVE-L--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred --cceEE-e--cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 00000 1 245678999998 67899999 99999999999999999999999999999997 66 999999999
Q ss_pred cEEEEecCCCceEEEEcCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEE
Q 004789 507 SILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 585 (730)
Q Consensus 507 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~ 585 (730)
.|++||++++..+..+..+ ..|.++.|+ +++.++++|+.||.|++||+++.. .++. ...+|. ..|.++.|
T Consensus 599 ~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~f 669 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVRF 669 (793)
T ss_pred EEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEEE
Confidence 9999999999998888754 679999995 578999999999999999998742 1233 345777 68999999
Q ss_pred ecCCcEEEE-EecCcEEEEeCCCC------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 586 HPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 586 spdg~~l~~-s~dg~I~iwd~~~~------~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
. ++.++++ +.|+.|++||++.+ ..+..+. +|...+..++|+|++.+|++|+.||.|++|+......+..+
T Consensus 670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 7 6677777 68999999999743 4566665 46888999999999999999999999999998776554433
Q ss_pred eccccc-C----CCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 659 NLTAYA-Q----PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 659 ~~~~~~-~----~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
...... . ..++...|. +++|+| ++.+|++|+.||.|+||++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 211000 0 011234466 999999 8999999999999999996
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-30 Score=269.07 Aligned_cols=278 Identities=23% Similarity=0.330 Sum_probs=239.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.++|.+++|+|++++|++++.||.+++|++.++... ... ..|...+..+.|+ +
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---------------------~~~--~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---------------------RTL--KGHTGPVRDVAASADG 63 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---------------------EEE--ecCCcceeEEEECCCC
Confidence 49999999999999999999999999999998765420 001 1578888899999 6
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
+++++++ +|.|++||+.+++....+..|...+.++.|++++ .+++++.|+.|++||+.+++....+..|...|.+++|
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 6899999 9999999999988888999999999999999999 8888888999999999999999999889999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~ 613 (730)
+|++.++++++.|+.|++||+++++. +. ....|. ..+.+++|+|+++.+++ +.++.|++||+++++.+..
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKC-----VA-TLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEcccccc-----ce-eEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 99999999888899999999987432 22 233454 58999999999988887 4799999999998888777
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
+.. |...+.+++|+|++.++++++.||.|++|++.+++....+. +| ...+. +++|+| ++.+|++++.
T Consensus 215 ~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~-~~~i~--~~~~~~-~~~~l~~~~~ 281 (289)
T cd00200 215 LRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-------GH-TNSVT--SLAWSP-DGKRLASGSA 281 (289)
T ss_pred hhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-------cc-CCcEE--EEEECC-CCCEEEEecC
Confidence 743 57799999999999999998889999999999988777775 44 44577 999999 7899999999
Q ss_pred CCcEEEEe
Q 004789 694 NGRVHVIE 701 (730)
Q Consensus 694 Dg~I~iWd 701 (730)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=265.08 Aligned_cols=272 Identities=19% Similarity=0.284 Sum_probs=240.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+-|+-..+++++.|++|++||.. ++++.+ .+ .||++.|..++|+..|++||+++.|-.+++||.++...
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~----tg~~e~-~L--rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~-- 184 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTE----TGELER-SL--RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR-- 184 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEcc----chhhhh-hh--hccccceeEEEEecCccEEEecCCccchhheeHHHHHH--
Confidence 3568999999999999999999996 444422 23 36999999999999999999999998899999876321
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
+++... +|...|.+++|- |.++++++ |.+|+.|++.+|-++.++.+|...|..+..+
T Consensus 185 ------------------c~ks~~--gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 185 ------------------CIKSLI--GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred ------------------HHHHhc--CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 111111 799999999999 99999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC---------------CCEEEEEeCCCcEEEEEcCCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd---------------~~~l~s~s~dg~I~vwd~~~~ 558 (730)
.|| .+++++.|.+|++|-+.++++...+..|.-+|-+++|.|. +.++++++.|++|++||+.++
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 999 9999999999999999999999999999999999999763 248999999999999999995
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 637 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 637 (730)
.++. ...+|. +.|..++|+|.|+||+++ .|+++++||++++++...+. .|...++++.|..+..++++
T Consensus 325 -----~cL~-tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 325 -----MCLF-TLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred -----eEEE-EEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEe
Confidence 4555 567888 799999999999999995 89999999999999999887 46899999999999999999
Q ss_pred EEcCCeEEEEEC
Q 004789 638 SCKSGHVKVFDT 649 (730)
Q Consensus 638 gs~dg~I~iwd~ 649 (730)
|+-|..+++|.-
T Consensus 394 GsVdqt~KvwEc 405 (406)
T KOG0295|consen 394 GSVDQTVKVWEC 405 (406)
T ss_pred ccccceeeeeec
Confidence 999999999964
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-31 Score=246.23 Aligned_cols=272 Identities=15% Similarity=0.208 Sum_probs=222.9
Q ss_pred CCCCC-CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 339 TSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 339 ~~spd-g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
+..|- |..||+++.|+.||+|+..+ ...-.|+...- .+|+..|.+++|+|.|++||+||.|.++.||.-..+..
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld--~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef-- 95 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLD--DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF-- 95 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCC-CCcEEEEEecc--ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce--
Confidence 45666 88999999999999999975 23344554332 36999999999999999999999999999997654433
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC---ceEEEEEcCCCCCeEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATYF 491 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t---~~~~~~~~~~~~~v~~i 491 (730)
+++. .++||.+.|.|++|+ |++||+++ |..|.||.+.. .++...++.|...|..+
T Consensus 96 -----------------ecv~--~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 96 -----------------ECVA--TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred -----------------eEEe--eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 1222 234899999999999 99999999 99999999974 46788899999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCC---CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCT---KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
.|+|.. +|++++.|++|++|+-.. -.+.+++.+|.+.|.+++|++.|..|++++.|++++||-..+.
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------- 227 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------- 227 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---------
Confidence 999988 999999999999998662 3789999999999999999999999999999999999987641
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc------eeeeecCCCCCCCeEEEEEecC-CCEEEEEE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN------HTSQLVPDKMDLPITYATYSCD-GKCIYVSC 639 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~------~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs 639 (730)
+..-|. ..++.++|. .-.|++ |.|+.|++|-....- .+... .+.|...|+++.|.|. ...|++|+
T Consensus 228 -~~~~~s---r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 228 -LSGMHS---RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred -cchhcc---cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecC
Confidence 223344 578999998 446777 699999999765321 11111 2357889999999995 67899999
Q ss_pred cCCeEEEEECC
Q 004789 640 KSGHVKVFDTS 650 (730)
Q Consensus 640 ~dg~I~iwd~~ 650 (730)
.||.|++|.+.
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 99999999864
No 37
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=254.80 Aligned_cols=294 Identities=15% Similarity=0.147 Sum_probs=250.2
Q ss_pred CCCCCcEEEEEEec---CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 378 NSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 378 ~gh~~~V~~v~fsp---dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
+||+.+|..++||| +|-+|++++.|+.-.+-+-+ +|.-+.++. +|.+.|++.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~---------------------tgdwigtfe--ghkgavw~~~l 67 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD---------------------TGDWIGTFE--GHKGAVWSATL 67 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC---------------------CCCcEEeee--ccCcceeeeec
Confidence 67999999999995 88899999999876654433 333343333 79999999999
Q ss_pred e--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCe
Q 004789 455 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 529 (730)
Q Consensus 455 s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V 529 (730)
+ ...-|+++ |=+-++||.-+|..+.++. |..-|.+++|+.|. .|++|+.+..++|||++.. .+...+.+|.+.|
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 8 44556667 8899999999999999986 88889999999999 9999999999999999865 4567888999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 609 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~ 609 (730)
..+.|....+.+++.+.|++||+||.+++.......+ . .+|+++.++++|++|.++..+.|.+||..+..
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----N-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----C-----CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 9999999899999999999999999999765433222 2 47999999999999999999999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
.++.+.. ...|.+...+|+...+++|++|+.++.||..+|+.+..+. .|| -++|. ||.|+| +|...|
T Consensus 217 ~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh-~gpVh--cVrFSP-dGE~yA 283 (334)
T KOG0278|consen 217 LLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGH-FGPVH--CVRFSP-DGELYA 283 (334)
T ss_pred ceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCC-CCceE--EEEECC-CCceee
Confidence 9988865 6789999999999999999999999999999999887752 177 55788 999999 899999
Q ss_pred EEeCCCcEEEEeCCCCce--eeeccCCCCCc
Q 004789 690 LGLTNGRVHVIEPLESEV--EWGKLPFTDSR 718 (730)
Q Consensus 690 s~s~Dg~I~iWd~~~~~~--~w~~~~~~~~~ 718 (730)
+||.||+|++|....++. .|+...+.+.+
T Consensus 284 sGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred ccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 999999999999987754 57766664443
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.5e-31 Score=276.13 Aligned_cols=245 Identities=17% Similarity=0.172 Sum_probs=208.6
Q ss_pred cCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCce
Q 004789 442 AADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 518 (730)
Q Consensus 442 ~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~ 518 (730)
..+|...|++++++ ...+++|+++.|++|+..+.++++++... .+.+..|.|.+ ++++|...|.+.+||+.+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 34799999999999 44566666899999999999999999754 78899999999 999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-----Cceecceeec--ccccCCCCCCCCeEEEEEecCCcE
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-----WKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~-----~~~~~~~~i~--~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
+.+++.|.+.|++++.+||+..+++||.|.+|++||..- +.+.+...+. ++.. -+ ..|.|+.+||||++
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~---ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LE---DDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-cc---ccEEEEEEcCCCcE
Confidence 999999999999999999999999999999999999753 1110000000 0111 11 57999999999999
Q ss_pred EEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcc
Q 004789 592 LLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 592 l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 670 (730)
|+++ -|+++++|-+.+.+..-.+. +|.-||.|+.+|||++.+++||.|.+|+||-++-|.+.+.+- +| +
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-------AH-d 592 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-------AH-D 592 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-------cc-c
Confidence 9998 89999999999888776775 579999999999999999999999999999999999888876 66 5
Q ss_pred cceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
..|- +|.|-| ....+.+||.||.|+-||-..=
T Consensus 593 DSvm--~V~F~P-~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 593 DSVM--SVQFLP-KTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred Ccee--EEEEcc-cceeEEEecCcceEEeechhhh
Confidence 5566 999999 7889999999999999987543
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=243.02 Aligned_cols=245 Identities=16% Similarity=0.221 Sum_probs=217.7
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
.+.++|..+.|+ |+|.++++ |.+|++|+...|.+++++.+|...|..++.+.|+ .|++|+.|..|.+||+.+|+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 689999999999 99988888 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecC
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 598 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg 598 (730)
+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. ..+++ ++.... ..|.++..+ +..+++ +.||
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQ-ildea~---D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQ-ILDEAK---DGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccc-hhhhhc---CceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999999999999999999999854 35666 333333 578888886 445666 5999
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEE
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 678 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 678 (730)
+++.||++.|.....+. ..+|++++|++||++.++++.|+++++.|-.+|+++..+. || .+.-+.+..
T Consensus 166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-------Gh-kn~eykldc 233 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-------GH-KNMEYKLDC 233 (307)
T ss_pred cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-------cc-ccceeeeee
Confidence 99999999998766553 7899999999999999999999999999999999999887 77 444666677
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 679 AAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 679 ~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
+++. ....+++|++||.|++||+.+......
T Consensus 234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred eecc-cceeEEeccCCceEEEEEeccceeeee
Confidence 8877 568999999999999999998876543
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=7.4e-32 Score=260.47 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=227.0
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 459 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l 459 (730)
....|.|+.+.. ..+++|..|++|+|||..+..+ ...+. ||++.|.|+.|..+.+
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c---------------------~~~L~--GHtGSVLCLqyd~rvi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLEC---------------------LKILT--GHTGSVLCLQYDERVI 250 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHH---------------------HHhhh--cCCCcEEeeeccceEE
Confidence 467899998853 4589999999999999776554 22122 8999999999998899
Q ss_pred EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCc---eEEEEcCCCCCeEEEEEe
Q 004789 460 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYS 535 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s 535 (730)
++|+ |.+|++||+++|+++.++-+|...|..+.|+.. ++++++.|.+|.+||+.+.. +.+.+.||...|+.+.|+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence 9999 999999999999999999999999999999754 99999999999999998763 446678999999999996
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~ 614 (730)
.+++++++.|.+|++|++.++ ..+. +..+|. ..|.|+.+ .|+++++| +|.+|++||+..|.+++.+
T Consensus 330 --~kyIVsASgDRTikvW~~st~-----efvR-tl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTSTC-----EFVR-TLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred --cceEEEecCCceEEEEeccce-----eeeh-hhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH
Confidence 569999999999999999994 4455 677887 57777766 47888885 9999999999999999988
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecc-ccc-CCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYA-QPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~-~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
. +|..-|.++.|. .+.+++|+.||+|+|||+.++..-...... ... ...| .+.|. .+.| |...+++++
T Consensus 397 e--GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVF--rLQF---D~fqIvsss 466 (499)
T KOG0281|consen 397 E--GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVF--RLQF---DEFQIISSS 466 (499)
T ss_pred h--chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeE--EEee---cceEEEecc
Confidence 6 478999999985 678999999999999999876432111100 000 0122 55677 7777 457899999
Q ss_pred CCCcEEEEeCCCCc
Q 004789 693 TNGRVHVIEPLESE 706 (730)
Q Consensus 693 ~Dg~I~iWd~~~~~ 706 (730)
.|.+|.|||+.++-
T Consensus 467 HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 467 HDDTILIWDFLNGP 480 (499)
T ss_pred CCCeEEEEEcCCCC
Confidence 99999999998874
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.6e-30 Score=268.78 Aligned_cols=275 Identities=18% Similarity=0.269 Sum_probs=241.0
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|++.|.++.|+|...+++++--+|.|.||+.++...... ++ -...+|++..|- .+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks----------fe-------------V~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS----------FE-------------VSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee----------ee-------------ecccchhhheeeeccc
Confidence 799999999999999999999999999999887665221 11 245688888888 88
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEE
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~ 534 (730)
++++|+ |..|+||+..|++.+..|..|..-|.|++.+|.. ++++++.|-.|++||.+.+ .+.+++.||...|.+++|
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 999999 8999999999999999999999999999999999 9999999999999999876 788999999999999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--CCcEEEEE-ecCcEEEEeCCCCce
Q 004789 535 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEAPTLNH 610 (730)
Q Consensus 535 sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--dg~~l~~s-~dg~I~iwd~~~~~~ 610 (730)
+| |.+.+++++.|++|++|.+.+. .+.. ++.+|. ..|+++.+-+ |..+|++| .|..|+|||.++..|
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~-----~~nf-Tl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSP-----HPNF-TLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCC-----CCce-eeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99 6689999999999999999882 3444 567898 7999999987 44789985 888999999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 611 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 611 ~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
++++. +|...|..++|+|.-..+++|++||+++||+..|.++...+.. | -..+| +++-.+ ..+.++.
T Consensus 220 V~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~------g--leRvW--~I~~~k-~~~~i~v 286 (794)
T KOG0276|consen 220 VQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY------G--LERVW--CIAAHK-GDGKIAV 286 (794)
T ss_pred HHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc------C--CceEE--EEeecC-CCCeEEE
Confidence 99996 4799999999999999999999999999999999887777653 2 45688 999888 6677888
Q ss_pred EeCCCcEEE
Q 004789 691 GLTNGRVHV 699 (730)
Q Consensus 691 ~s~Dg~I~i 699 (730)
|.+.|.|.+
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 888777644
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=3e-30 Score=245.84 Aligned_cols=277 Identities=15% Similarity=0.152 Sum_probs=229.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..|.|||..+|+||.|..|.+|++.+..+ ....+. ||++.|..+.|++|++.++++|.|.+++.||.++++...
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lk----gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLK----GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecccccc--ceeeec----cccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 68999999999999999999999864222 222222 599999999999999999999999999999988887522
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE-EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~-l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
. . .+|..-|+.+..+ |.. +.+++ |+++++||+++...++++. ....++++.|
T Consensus 127 k---------------------~--k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f 182 (338)
T KOG0265|consen 127 K---------------------H--KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF 182 (338)
T ss_pred h---------------------h--ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEe
Confidence 1 1 1688889998877 555 55566 8999999999888888775 4567899999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
..++ .+.+|+-|+.|++||++.+.....+.||.+.|+.+..+|+|.++.+-+.|.++++||++-.... .+.+. ++.+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~-if~g 260 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVK-IFQG 260 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEE-Eeec
Confidence 9999 9999999999999999999999999999999999999999999999999999999999874322 12243 4444
Q ss_pred CCC-CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 573 LVP-ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 573 h~~-~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
|.- -......++|+|+++.+.+ +.|..+++||......+..+. +|.+.|.++.|+|...+|.+++.|.+|++=.
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 320 0023457899999999998 589999999997777776665 5799999999999999999999999998744
No 43
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9.5e-30 Score=242.67 Aligned_cols=301 Identities=14% Similarity=0.152 Sum_probs=239.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCC-eeEeecccCCCCCCeeEEEEe--C
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
|++++.+.+|||||.++|+||.|..|+|.|++..--... ......-+...+ -+++++. .|...|+++.|+ .
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre 184 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRE 184 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhccCCcccCCceEeehh--hccCcccceeecchh
Confidence 999999999999999999999999999999873211000 000000011111 1333333 699999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEc--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE---cCCCCCe
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRI 529 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~--~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~~V 529 (730)
..|++|+ |++|+++|.......+.++ ....+|.++.|+|.| ++++|..-.++++||+++.++...- .+|++.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 8899999 9999999997654443333 345689999999999 9999999999999999998876543 3599999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 608 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~ 608 (730)
+++.+++.|++.++|+.||.|++||--++ +++.++...|.. ..|.+..|..+|+++++ |.|..+++|.+.++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-----rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSN-----RCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccH-----HHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 99999999999999999999999998773 566667777876 78999999999999999 69999999999999
Q ss_pred ceeeeecCCCC---CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC
Q 004789 609 NHTSQLVPDKM---DLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 684 (730)
Q Consensus 609 ~~~~~~~~~~h---~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~ 684 (730)
+++..+.+.+. ...-+...|+....|++.-.+ .+.+.-||.+++..+..+.. || ++.++ .+..+| .
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i~HSP-~ 407 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WIVHSP-V 407 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EEEeCC-C
Confidence 99999987532 223355678877888776654 37899999999887666543 77 66788 899999 7
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 004789 685 PNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 685 ~~~las~s~Dg~I~iWd~~ 703 (730)
+.-|++|++|-.+|+|--.
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 8899999999999999653
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5e-30 Score=273.99 Aligned_cols=287 Identities=17% Similarity=0.231 Sum_probs=245.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
-+..|..++|+|...+++++-..|.|++||.+-+.+ +..+. .|.++|+.++|+ +.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------i~rFd--eHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------IDRFD--EHDGPVRGVDFHPTQP 64 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------Hhhhh--ccCCccceeeecCCCC
Confidence 467899999999999999999999999999865544 22111 699999999999 88
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEe
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 535 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 535 (730)
++++|+ |-.|+||+.++.+++.++.+|-..|..+.|++.- +|+++|.|.+|+||+..+++++..+.||...|.|..|+
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999 8999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceec-----------------------ceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~-----------------------~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
|....++++|-|.+|+|||+..-+... .-.++.+.+||. ..|+.++|+|.-..+
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI 221 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence 999999999999999999996522111 112334677888 789999999999999
Q ss_pred EEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCccc
Q 004789 593 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 671 (730)
Q Consensus 593 ~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~ 671 (730)
++| .|..|++|.+...+.-..=...+|...|.++-|+|...++++.++|++|+|||+...+.++++. +..+
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rend 293 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------REND 293 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--------ccCC
Confidence 995 8889999998765544333334689999999999999999999999999999999998888885 2255
Q ss_pred ceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 672 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 672 ~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
..| .++-|| ..+++|.| .|+.+-||.++-
T Consensus 294 RFW--~laahP-~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 294 RFW--ILAAHP-ELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred eEE--EEEecC-Ccceeeee-cCCceEEEEEcc
Confidence 678 888899 77777766 567777888863
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.9e-30 Score=279.66 Aligned_cols=279 Identities=18% Similarity=0.206 Sum_probs=232.3
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||+.+++++.|+.+++|+...... ..... + .+|...|.+++|+|+|+++++++.|++|+|||+....
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~--l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--- 236 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRE--L--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--- 236 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-hhhcc--c--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC---
Confidence 58899999999999999999999953221 01111 1 3699999999999999999999999999999983332
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
.+++.+. +|...|++++|+ |+.+++|+ |++|++||+++++++..+.+|...|++++|+
T Consensus 237 -----------------~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 237 -----------------RNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred -----------------eEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 2233222 799999999999 98999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCc--eEEEEcCCCCC--eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccc
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 569 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~--V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~ 569 (730)
+++ .|++++.|+.|++||+.++. ++..+.++... ++++.|+|++.++++++.|+.+++||+..+.. .. .
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-----~~-~ 371 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-----VG-T 371 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-----ee-e
Confidence 999 99999999999999999998 56777776655 99999999999999999999999999998532 22 2
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEE
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKV 646 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs--~dg~I~i 646 (730)
..+|......+.+...++.+++++++ .|+.|++||+.++..+..+..+. ...+..+.++|...++++++ .|+.+++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEE
Confidence 34444100134555667899999995 89999999999988887776432 88899999999999999998 6899999
Q ss_pred EECC
Q 004789 647 FDTS 650 (730)
Q Consensus 647 wd~~ 650 (730)
|...
T Consensus 451 w~~~ 454 (456)
T KOG0266|consen 451 WKYD 454 (456)
T ss_pred ecCC
Confidence 9754
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1e-28 Score=254.24 Aligned_cols=270 Identities=24% Similarity=0.287 Sum_probs=231.5
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|+++.+++++.||.|++|++.... ....+. +|...+..+.|+|+++++++++.||.|++|++.+++..
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~- 86 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLK----GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV- 86 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEe----cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce-
Confidence 4789999999999999999999997422 222222 38899999999999999999999999999998765331
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
.... .|...|.++.|+ ++++++++ +|.|.+||+.+++....+..|...+.+++|+
T Consensus 87 --------------------~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 87 --------------------RTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred --------------------EEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 0011 477899999999 67888888 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
|++ .+++++.|+.|++||+++++.+..+..|...|.++.|+|+++.+++++.|+.|++||++.++ .+. ....|
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~-~~~~~ 218 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-----CLG-TLRGH 218 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-----eec-chhhc
Confidence 999 88888889999999999999999998899999999999999999999999999999998743 223 23345
Q ss_pred CCCCCCeEEEEEecCCcEEEEEe-cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 574 VPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s~-dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
. ..+.+++|+|++.+++++. +|.|++||+.+++....+. .|...+.+++|+|++.+|++++.||.|++|+
T Consensus 219 ~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 E---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred C---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4 5899999999988888865 9999999999888887776 4578999999999999999999999999996
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-29 Score=267.73 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=231.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+|-|....+.++-..|.|++||..- +.+.. .+ ..|.++|..++|+|++.++++||.|..|+||++.+.++..
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM----~tli~-rF--deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM----GTLID-RF--DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh----hhHHh-hh--hccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 68899999999999999999999962 22211 11 2499999999999999999999999999999988776621
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
. +. +|-..|+.+.|+ -.+|++++ |.+|+||+..+++++..+.+|...|.|..|+
T Consensus 88 t---------------------L~--GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 88 T---------------------LL--GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred h---------------------hc--cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 1 12 799999999999 78999999 8999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCC-----------------------------ceEEEEcCCCCCeEEEEEeCCCCEEEEE
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTK-----------------------------KTKAKLKGHQNRITCLAYSLSLNVLVSS 544 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~-----------------------------~~~~~~~~h~~~V~~l~~spd~~~l~s~ 544 (730)
|.. .++++|-|.+|++||+..- -....+.||...|+-++|+|.-..+++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 988 9999999999999997521 0234568999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe
Q 004789 545 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 623 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v 623 (730)
+.|+.|++|.+...+ ...+. +..||. +.|.++-|+|....+++ |.|++|++||+.....+++++.. ....
T Consensus 225 ~DDRqVKlWrmnetK---aWEvD-tcrgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRF 295 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK---AWEVD-TCRGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRF 295 (1202)
T ss_pred CCcceeeEEEecccc---ceeeh-hhhccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeE
Confidence 999999999997632 12334 577888 79999999999999999 79999999999999999999743 7788
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 624 TYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 624 ~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+.++-+|..+++++|- |+-+.||.+.
T Consensus 296 W~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred EEEEecCCcceeeeec-CCceEEEEEc
Confidence 9999999998888775 4445566554
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=246.34 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=236.2
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
+.+..|-...++||+.|++|+|||+.. ++. .+++ .||...|..+++|+-..||++++.|+.|++||++.++.+
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlat----g~L-kltl--tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLAT----GQL-KLTL--TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEccc----CeE-EEee--cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence 357889999999999999999999963 333 3344 359999999999999999999999999999999877652
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
. .+. ||-..|+|++.+ -+.|++|+ |.++++||+++...+..+.+|...|..+.+
T Consensus 229 R---------------------~Yh--GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 229 R---------------------HYH--GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred H---------------------Hhc--cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 2 222 799999999999 88899999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
.|.+ .+++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.| .|+-|++..++ .++ ...+
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~-----f~~-nlsg 358 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE-----FLQ-NLSG 358 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc-----hhh-cccc
Confidence 9988 99999999999999999999999999999999999999999999998876 68999998853 344 3567
Q ss_pred CCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec---CCC---CCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004789 573 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV---PDK---MDLPITYATYSCDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~---~~~---h~~~v~~~~~spdg~~l~sgs~dg~I~i 646 (730)
|. +.|.+++.+.||-++..+..|.|..||.+++...+... ..+ ....|.+.+|...|..|++|..|.+|++
T Consensus 359 h~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 359 HN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred cc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence 77 78999999999866555788999999999887655442 111 2567899999999999999999999999
Q ss_pred EECCC
Q 004789 647 FDTST 651 (730)
Q Consensus 647 wd~~~ 651 (730)
|.-+.
T Consensus 436 ~keDe 440 (460)
T KOG0285|consen 436 YKEDE 440 (460)
T ss_pred Eeccc
Confidence 97543
No 49
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=273.33 Aligned_cols=268 Identities=16% Similarity=0.224 Sum_probs=209.6
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc--c--------------------------------ccccc
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE--E--------------------------------ENVNM 424 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~--~--------------------------------~~~~~ 424 (730)
.|.+.||++.||+||+|||+||.|+.|+||.+...+.... . .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999877221000 0 00000
Q ss_pred ee-eEecCCC----CeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC
Q 004789 425 ES-QLYQPSS----KLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 425 ~~-~i~~~~~----~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg 497 (730)
.+ ....... .+.+..+. ||.+.|..+.|+ .++|++++ |.+|++|++...+|++.|. |..-|+|++|+|-+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~--GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFK--GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhh--ccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 00 0111111 11111122 799999999999 99999999 9999999999999999996 99999999999977
Q ss_pred --eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCC
Q 004789 498 --LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 575 (730)
Q Consensus 498 --~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~ 575 (730)
+|++|+-||.|+||++...+.+.-.. -..-|++++|.|||+..+.|+.+|.+++|+....+......|. ...+...
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~ 499 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKK 499 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccc
Confidence 99999999999999998776654443 4588999999999999999999999999999986554444443 1111111
Q ss_pred CCCCeEEEEEecCC--cEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 576 ETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 576 ~~~~v~~l~~spdg--~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
....|+.+.|.|.. +.|+++.|..|+|||.++..++..|++......-....|+.||++|++|++|..||||+...
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 11369999999843 36667899999999999999998888765566678899999999999999999999999744
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-28 Score=239.53 Aligned_cols=277 Identities=12% Similarity=0.111 Sum_probs=220.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..||++|++||+++.|.+..+|++.....-+... ++ .||..+|..+.||||.+||++++.|..+.+||+.++..
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~--tl--vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~-- 303 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKK--TL--VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL-- 303 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeee--ee--ecccCceEEEEECCCCCeEEecCchHheeeccCCcchh--
Confidence 4589999999999999999999997543322222 23 35999999999999999999999999999998877765
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCC-CCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~-~~~v~~i~~ 493 (730)
...+. .++...+.+++|. |..+++|+ |++|..||++ |.....+++- ...|.+++.
T Consensus 304 -------------------~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 304 -------------------RHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI 362 (519)
T ss_pred -------------------hhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE
Confidence 22111 1466889999999 88899999 9999999987 4445555443 356899999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
++|| .+++.+.|..|++++.++......+. ...+|+++..+.|++++++.-.+..+++||+.... .+. -..|
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-----lv~-kY~G 435 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-----LVR-KYFG 435 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-----HHH-Hhhc
Confidence 9999 88888899999999998876655554 44689999999999999999999999999998632 222 3445
Q ss_pred CCCCCCCeEEEEEec-CCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 004789 573 LVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 573 h~~~~~~v~~l~~sp-dg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~ 649 (730)
|... ..+..-||.- +..++++| .|+.|+||+..+++++..+. +|...|.+++|+|. ...+|+++.||+|+||..
T Consensus 436 hkq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 436 HKQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS--GHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec--CCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 5421 2344556655 45778885 89999999999999999997 47999999999994 567899999999999987
Q ss_pred CC
Q 004789 650 ST 651 (730)
Q Consensus 650 ~~ 651 (730)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 54
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=230.20 Aligned_cols=279 Identities=14% Similarity=0.181 Sum_probs=236.7
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ....+|.+.|-.++|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------------~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------------LVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------------hcccCCCcchhhheeCCCC
Confidence 5999999999999999999999999999999987654211 1111799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
...+++++ |.+|++||++.+++........+.| -+.|+|+| ++++++.|..|.+.|.++.+.+...+ ....++-++
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence 77888888 9999999999999999987666655 78999999 99999999999999999988877765 456788899
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~ 612 (730)
|+-++.+++..+.-|.|.|..... .++++ ....|. ....||.|+|+|+++|+| .|..+.+||+...-+++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~-si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPS-----LKPVQ-SIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccc-----ccccc-ccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 998888877777779999988876 35566 566777 678899999999999995 89999999999888888
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+. .+.-+|..+.||.||++||+|++|-.|-|=++.+|..+..+.. .++.+ .|+||| ...+||-++
T Consensus 226 ~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA~ 291 (313)
T KOG1407|consen 226 CIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYAC 291 (313)
T ss_pred eec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEEe
Confidence 886 3589999999999999999999999999999999998888753 55567 999999 788888877
Q ss_pred CC---------CcEEEEeCC
Q 004789 693 TN---------GRVHVIEPL 703 (730)
Q Consensus 693 ~D---------g~I~iWd~~ 703 (730)
+| |.|++|-+.
T Consensus 292 ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 292 DDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCCCccccccceeEEecCC
Confidence 65 567776654
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-28 Score=289.56 Aligned_cols=280 Identities=14% Similarity=0.152 Sum_probs=222.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcc---eeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCC
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSE---CRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSN 413 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~---~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~ 413 (730)
..++|||+++|+|+.|++|+||+......... .....+ .+...|.+++|+| ++.+|++++.||+|++||+.++
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 58999999999999999999999753211110 011111 1457899999987 4789999999999999998765
Q ss_pred ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeE
Q 004789 414 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 489 (730)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~ 489 (730)
+. +... .+|...|++++|+ +.+|++|+ ||.|++||+.++..+..+..+ ..|.
T Consensus 566 ~~---------------------~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 566 QL---------------------VTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred eE---------------------EEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 43 1111 1699999999997 67899999 999999999999998888754 6789
Q ss_pred EEEEcC-CC-eEEEEECCCcEEEEecCCCc-eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee-ccee
Q 004789 490 YFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-CSKF 565 (730)
Q Consensus 490 ~i~~sp-dg-~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~-~~~~ 565 (730)
++.|++ +| .|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||++..... ...+
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 999964 57 99999999999999998765 567788999999999997 6789999999999999999753210 1123
Q ss_pred ecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec-----------CCCCCCCeEEEEEecCCC
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSCDGK 633 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~-----------~~~h~~~v~~~~~spdg~ 633 (730)
+. ...+|. ..+..++|+|++.+|+++ .|+.|++|+......+..+. ...+...|.+++|+|++.
T Consensus 701 l~-~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 701 LH-SFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred eE-EEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 44 456777 688999999999999995 89999999987654443221 122356799999999999
Q ss_pred EEEEEEcCCeEEEEEC
Q 004789 634 CIYVSCKSGHVKVFDT 649 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~ 649 (730)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999986
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=251.57 Aligned_cols=265 Identities=16% Similarity=0.234 Sum_probs=219.7
Q ss_pred CCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccc
Q 004789 342 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 421 (730)
Q Consensus 342 pdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~ 421 (730)
-|...+++|..|+||+|||.. ...|.... .||++.|.|+.|.. +.+++||+|.+|+|||+++++.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n----~~~c~~~L---~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~------ 269 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKN----SLECLKIL---TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEP------ 269 (499)
T ss_pred ecchhhhcccccCceEEeccc----cHHHHHhh---hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCch------
Confidence 366788999999999999996 33444332 47999999999964 4899999999999999887765
Q ss_pred ccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCce---EEEEEcCCCCCeEEEEEcCCC
Q 004789 422 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 422 ~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~---~~~~~~~~~~~v~~i~~spdg 497 (730)
+.+++ +|...|..+.|+..++++++ |.+|.+||+.... +.+.+.+|...|+.+.|+..
T Consensus 270 ---------------l~tli--hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 270 ---------------LNTLI--HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred ---------------hhHHh--hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 33333 69999999999999999999 9999999998654 33456799999999999644
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 577 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~ 577 (730)
++++++.|.+|++|++.+++.++++.+|...|.|+.+. |+++++|+.|.+|++||+..| ..+. +.+||+
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G-----~cLR-vLeGHE--- 400 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-----ACLR-VLEGHE--- 400 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc-----HHHH-HHhchH---
Confidence 99999999999999999999999999999999998875 889999999999999999985 4455 788998
Q ss_pred CCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee-------ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 578 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ-------LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 578 ~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~-------~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.-|.++.|. .+.+++ +.||.|++||+.++...+. .....|.+.|..+.|. ...+++++.|.+|.|||+
T Consensus 401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 689999995 667888 5999999999987543211 1112468899999984 567999999999999999
Q ss_pred CCceE
Q 004789 650 STLEL 654 (730)
Q Consensus 650 ~~~~~ 654 (730)
..+-.
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 87653
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=241.04 Aligned_cols=287 Identities=13% Similarity=0.148 Sum_probs=240.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|+++|.+++.+|+.+++++|+.|..-.+|++.++.... . ..+|...|.++.|+ |.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---------------------e--ltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---------------------E--LTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---------------------E--ecCCCCceEEEEEccCce
Confidence 99999999999999999999999999999987776411 1 12799999999999 99
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEe
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 535 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 535 (730)
+||+|+ +|.|+||+..++.....+......+.=+.|+|.+ .|+.|+.||.+.+|.+.++...+.+.||..++++=.|.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 999999 9999999999999999988777788899999999 99999999999999999988889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~ 614 (730)
|+|+.++++..||+|++||+.++.+ +..+..... ....++.++..+..++.| .++.+++.+..+++.+...
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~e~---~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQAEG---LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCce-----eEEeccccc---CcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 9999999999999999999999743 332221111 467789999999888885 8899999998888887766
Q ss_pred cC-C-----CCCCC---eEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 615 VP-D-----KMDLP---ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 615 ~~-~-----~h~~~---v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
.+ . .+... |-++.++..=.+.|+|+-||+|.|||+...+++.... | ...|. .+.|-+ .
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--------h-e~~V~--~l~w~~--t 338 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--------H-EDGVT--KLKWLN--T 338 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--------C-CCceE--EEEEcC--c
Confidence 52 0 12333 4444555566788999999999999999988777664 3 33466 899987 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeee
Q 004789 686 NRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
.+|++++.||.|+.||.++|+.+..
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred chheeeccCceEEeeeccccceEEE
Confidence 7899999999999999999987643
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=4.2e-29 Score=253.06 Aligned_cols=291 Identities=19% Similarity=0.223 Sum_probs=225.3
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|+..|.++++.|.|..|++||-|.+|++||++....... .+.+.. ......|+++.|+ |
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------~fr~l~--P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------SFRQLQ--PCETHQINSLQYSVTG 226 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccch----------------hhhccC--cccccccceeeecCCC
Confidence 4899999999999999999999999999999976543111 011111 1345689999999 7
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEE------------cCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCc-eEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATF------------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKA 520 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~------------~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~-~~~ 520 (730)
+.|++.+ ....+++|-...+..... ++|...++|.+|+|+. .+++++.||++++||+...+ .+.
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 7777666 889999997655444322 4788899999999999 99999999999999988653 233
Q ss_pred EEc-----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 521 KLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 521 ~~~-----~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
.++ +..-.+++++|++||+++|+|+.||.|.+|+..+... .+...+...|.+ ...|++|+||+||++|++
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLP-GQDITSISFSYDGNYLLSR 382 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCC-CCceeEEEeccccchhhhc
Confidence 332 2456789999999999999999999999999876432 222224456651 137999999999999999
Q ss_pred EecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCceEEEEeecccccCCC
Q 004789 595 IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAYAQPG 667 (730)
Q Consensus 595 s~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~~~~g 667 (730)
|.|+++++||+++.+ ++....+-....+-+.++|||+.++|++|+. .|.+++||..+.+.+..+...
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------ 456 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------ 456 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC------
Confidence 899999999998754 4555443333566788999999999999875 478999999999988887632
Q ss_pred CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 668 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 668 h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
...|. .+.||| .-++|..|+.||+++|+=-
T Consensus 457 --~aSvv--~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 --TASVV--RCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred --CceEE--EEeecc-hhhheeeecCCCceEEEEC
Confidence 33355 899999 6778888888999988643
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.9e-30 Score=243.87 Aligned_cols=280 Identities=12% Similarity=0.143 Sum_probs=234.5
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCC--CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~--~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
+..|||||++|++|+.||.|.+|++......+.. ++..++ ..|.++|.|+.||.|...||+|+.||.|++|.++++.
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL-kYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-KYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhh-hhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 3589999999999999999999999643211111 111111 2388999999999999999999999999999998887
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEE
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 491 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i 491 (730)
+... ++ ..|+..|+|+.|+ +..+.+++ |.++++.-+++|++++.+.+|...|+..
T Consensus 297 ClRr----------Fd------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 297 CLRR----------FD------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred HHHH----------hh------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 7322 11 1599999999999 88899999 9999999999999999999999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC--CCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
.|.+|| .+++++.||+|++|+..+++|+.+++. ...+|+++..-|. ...++++....+|++.++.. ..+.
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------QvVr 428 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QVVR 428 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eEEe
Confidence 999999 999999999999999999999999875 4567888887774 46788899999999999987 4444
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~i 646 (730)
.+..|... .+...+.+.+|.|.++++ +.|+.++.|.+.+|+..+++.. |...+..++-+|..+.|++-++||.+++
T Consensus 429 sfsSGkRE-gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 429 SFSSGKRE-GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred eeccCCcc-CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhh
Confidence 33333321 156678889999999998 8999999999999999888865 5888999999999999999999999999
Q ss_pred EE
Q 004789 647 FD 648 (730)
Q Consensus 647 wd 648 (730)
|.
T Consensus 506 Wk 507 (508)
T KOG0275|consen 506 WK 507 (508)
T ss_pred cC
Confidence 94
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-27 Score=227.01 Aligned_cols=286 Identities=15% Similarity=0.134 Sum_probs=227.1
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
..+.|.++.|+++|.+|++++.|.+++|||..++.... ... .+.-.|..++|. ..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---------------------ti~--skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---------------------TIN--SKKYGVDLACFTHHSN 69 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---------------------Eee--cccccccEEEEecCCc
Confidence 47889999999999999999999999999987766521 111 244567777777 44
Q ss_pred E-EEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 458 H-LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 458 ~-l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
. +.+.. |.+|+..++.+.+.++.|.+|...|++++.+|-+ .+++++.|++|++||++..++...+.... -..++
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~A 147 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAA 147 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--Cccee
Confidence 4 44444 7899999999999999999999999999999999 99999999999999999888877665332 33578
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~ 612 (730)
|.|.|-++|++.....|++||++.........+. +..+.. ...+.+.|+|||++++.+ ..+.+++.|.-+|..+.
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-ITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-cCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 9999999999988889999999985432222222 222222 578999999999999996 67889999999999888
Q ss_pred eecCCCCCC-CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 613 QLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 613 ~~~~~~h~~-~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
++....... .-.+.+|+||++++++|+.||+|++|++++|..+..+. |.+.+++. ++.|+| .-.+++|+
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~-------~~~~~~~~--~~~fnP-~~~mf~sa 293 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR-------GPNGGPVS--CVRFNP-RYAMFVSA 293 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec-------CCCCCCcc--ccccCC-ceeeeeec
Confidence 887644333 23678899999999999999999999999999998887 43355667 888999 45556655
Q ss_pred eCCCcEEEEeCCCCc
Q 004789 692 LTNGRVHVIEPLESE 706 (730)
Q Consensus 692 s~Dg~I~iWd~~~~~ 706 (730)
+..+.+|-+...+
T Consensus 294 --~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 294 --SSNLVFWLPDEDA 306 (311)
T ss_pred --CceEEEEeccccc
Confidence 5679999887543
No 58
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=255.83 Aligned_cols=347 Identities=14% Similarity=0.148 Sum_probs=267.9
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC-----------CCEEEEEeCCCcEEE
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----------GDFLVALTQTATHKL 407 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd-----------g~~L~s~s~dg~I~i 407 (730)
.|.|....|.+.-.|..+++||+.+....+++..+.+ |...||.+.--|. ...+++++.|++|++
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly----HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY----HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEeccccccccceeeeee----ccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 4556666777788999999999999888888887765 9999999987661 124899999999999
Q ss_pred eecCCCccccc----cccccceeeEe---------cCCCCeeEeecc-cCCCCCCeeEEEEe--CcEEEEee-CCEEEEE
Q 004789 408 WKWQSNKQSLE----EENVNMESQLY---------QPSSKLVMTNDI-AADPKDSISCFALR--GSHLFSAS-GGKISIF 470 (730)
Q Consensus 408 Wd~~~~~~~~~----~~~~~~~~~i~---------~~~~~~~~~~~~-~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vw 470 (730)
|++..+..... ..+......++ |...+.+-+... .-+....+++++.+ |++||+|. .|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99987332111 11111111111 111111000000 00356789999999 99999999 8999999
Q ss_pred EcCCceEEEEEcCCCCCeEEEEEcCCC----eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCC--CEEEE
Q 004789 471 SLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL--NVLVS 543 (730)
Q Consensus 471 d~~t~~~~~~~~~~~~~v~~i~~spdg----~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~--~~l~s 543 (730)
++..-+....+..|...|.|+.++.-. +||+++.|.-|++||+... .+++++.+|...|+++.|.-+| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 999999999999999999999998543 8999999999999998754 6778899999999999998877 78999
Q ss_pred EeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCC
Q 004789 544 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDL 621 (730)
Q Consensus 544 ~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~-~h~~ 621 (730)
++.|+.|.+--.+........+-.+...++ ..++.++..|..+++++ +.|..|+|||+.+++..+.|++. +|.+
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~k----tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSK----TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred ccCchhhheehhccccCceecccccccccc----ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 999988754322210000000101011222 47899999999999998 69999999999999999999864 3468
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
....+...|.|-||++.+.|.++.++|..+|+++.... || ...|+ ++.|.+ |.++|++.+.||.|.||.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GH-sE~VT--G~kF~n-DCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GH-SEAVT--GVKFLN-DCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-------Cc-chhee--eeeecc-cchhheeecCCceEEEEE
Confidence 89999999999999999999999999999999998877 87 55578 999999 899999999999999999
Q ss_pred CCC
Q 004789 702 PLE 704 (730)
Q Consensus 702 ~~~ 704 (730)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 853
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2e-28 Score=229.63 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=228.5
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.||..+++.+.|+.+|.+|.+++.|.+..||--..++ .+-.+. +|.+.|+|+..+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------rlGty~--GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------RLGTYD--GHTGAVWCCDIDWD 63 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---------------------eeeeec--CCCceEEEEEecCC
Confidence 3599999999999999999999999999998654433 233222 899999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-----CCcEEEEecC-------CCceEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPC-------TKKTKAK 521 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-----dg~I~iwd~~-------~~~~~~~ 521 (730)
.+++++|+ |.++++||+++|+++.+++ ...+|..+.|+++| +++.... .+.|.++|++ +.++...
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 88999999 9999999999999999987 45678999999999 5555443 3579999988 4466778
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 600 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I 600 (730)
+..+...++.+.|.|-+.+|++|..||.|..||++++.. .+. ....|. ..|+.++++||..++++ +.|.+-
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----LVD-SDEEHS---SKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----eee-chhhhc---cccccccccCCcceEEecccCccc
Confidence 888889999999999999999999999999999999642 233 344565 68999999999999999 599999
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe--EEEEECCCceEEEEeecc-----cccCCCCcccce
Q 004789 601 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLELRCQINLT-----AYAQPGTISLEL 673 (730)
Q Consensus 601 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~-----~~~~~gh~~~~v 673 (730)
++||..+.++++++.. ..+|++.+++|....++.|+.... |.-=+.+.|+....+-.. --...|| -++|
T Consensus 215 kl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPI 290 (327)
T ss_pred eeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCc
Confidence 9999999999999976 889999999998777776654322 222222222221111000 0012376 7789
Q ss_pred eeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 674 YPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+ +|+||| +|+..+||+.||.||+.-..
T Consensus 291 N--svAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 291 N--SVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred c--eeEECC-CCcccccCCCCceEEEEEec
Confidence 9 999999 89999999999999998664
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.7e-28 Score=237.57 Aligned_cols=273 Identities=14% Similarity=0.179 Sum_probs=224.6
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C-
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G- 456 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~- 456 (730)
|.+.|.++... ++++++|+.||.+++||...... .... +|.++|.+++|. +
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----------------------~~~~--Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----------------------KTIV--GHTGPIKSVAWVIKNS 157 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceE----------------------EEEe--cCCcceeeeEEEecCC
Confidence 99999999988 77899999999999999754432 2222 899999999998 3
Q ss_pred --cEEEEee-CCEEEEEEcCCceEE----EEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC-------------
Q 004789 457 --SHLFSAS-GGKISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------------- 515 (730)
Q Consensus 457 --~~l~s~s-dg~I~vwd~~t~~~~----~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~------------- 515 (730)
..|++++ |.++++|..+.++.. ....+|...|-++...++| .+++|+.|.+|.+|+..+
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 3599999 999999999877543 3334999999999999999 999999999999999321
Q ss_pred ------------CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEE
Q 004789 516 ------------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 516 ------------~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
+.++..+.||+.+|.++.|++ ...+++++.|.+|+.||+.++... .++..+ ..+.++
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~-----~~~~~~-----ksl~~i 306 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK-----STLTTN-----KSLNCI 306 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce-----eeeecC-----cceeEe
Confidence 235667889999999999998 668999999999999999996432 212222 478999
Q ss_pred EEecCCcEEEE-EecCcEEEEeCCCCc--e-eeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCce-EEEE
Q 004789 584 QFHPDQIHLLS-IHEGQIDVYEAPTLN--H-TSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQ 657 (730)
Q Consensus 584 ~~spdg~~l~~-s~dg~I~iwd~~~~~--~-~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~-~~~~ 657 (730)
..+|..+.|++ +.|..|++||.+++. . .+++. +|...|.++.|+|.. ..|++|+.|+++++||+++.+ ++..
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 99999999999 599999999998753 2 23443 578999999999955 567899999999999999877 7777
Q ss_pred eecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 658 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 658 ~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+. || ...|. ++.|+. +..+++||.|.+|+|+.-.
T Consensus 385 I~-------~h-~DKvl--~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IA-------GH-NDKVL--SVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ec-------cC-CceEE--EEeccC--CceEEeccCcceEEEeccc
Confidence 76 76 55577 999986 7899999999999998754
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.2e-29 Score=249.25 Aligned_cols=279 Identities=16% Similarity=0.195 Sum_probs=235.4
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|.+.|..+.|-++...|++|+.|..|++|++..++.. .+.. +.+..+.|+.+.|. +.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~t--LaGs~g~it~~d~d~~~~ 232 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-------------------LIST--LAGSLGNITSIDFDSDNK 232 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhh-------------------hhhh--hhccCCCcceeeecCCCc
Confidence 9999999999999888999999999999998766531 1111 11567889999999 77
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEe
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 535 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 535 (730)
++++++ |+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|+.||+....+.+++. ....+.+|+.+
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 777777 9999999999999999999999999999999888 89999999999999999988887765 34567777776
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~ 614 (730)
...+++|-.|++|++||+++.......+.. +.|+++..+++|..+++ +.|.++.+.|+++.+....+
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecC----------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 457889999999999999996543333333 68999999999999998 58999999999999888887
Q ss_pred cCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 615 VPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 615 ~~~~h--~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
...+. ....+.++|||++.|+++|+.||.|+||++.++++...+... + ....|. +++|+| .|..+++++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-----~-s~~aI~--s~~W~~-sG~~Llsad 450 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-----T-SNAAIT--SLSWNP-SGSGLLSAD 450 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC-----C-CCcceE--EEEEcC-CCchhhccc
Confidence 75432 455889999999999999999999999999999998887632 2 122466 999999 799999999
Q ss_pred CCCcEEEEe
Q 004789 693 TNGRVHVIE 701 (730)
Q Consensus 693 ~Dg~I~iWd 701 (730)
.++.+.+|.
T Consensus 451 k~~~v~lW~ 459 (459)
T KOG0288|consen 451 KQKAVTLWT 459 (459)
T ss_pred CCcceEecC
Confidence 999999994
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-27 Score=246.62 Aligned_cols=229 Identities=15% Similarity=0.182 Sum_probs=194.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+-+-.+.+++|+.|..||+|+... ..++..+. .|.+-|.+++.+|.-.+++++|.|-+|++||++.+-.
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt---~ekV~~Fe----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa-- 131 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNT---GEKVKTFE----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA-- 131 (794)
T ss_pred heeeeccceEEEecCCceEEEEeccc---ceeeEEee----ccccceeeeeecCCCCeEEecCCccEEEEeeccCcee--
Confidence 46677789999999999999999974 33445544 3999999999999999999999999999999876532
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
+.+.+. ||+..|.+++|+ .+.+|+++ |++|+||.+....+..++.+|...|+|+.+
T Consensus 132 ------------------~~qtfe--GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 132 ------------------CEQTFE--GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred ------------------eeeEEc--CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence 223222 899999999999 78899999 999999999999999999999999999999
Q ss_pred cCCC---eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 494 LPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 494 spdg---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
-+-| +|++|+.|.+|+|||.++..|++++.||...|..+.|+|.-..+++|+.||++++|+..+.+.... ..
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t-----Ln 266 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT-----LN 266 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh-----hh
Confidence 9877 999999999999999999999999999999999999999999999999999999999988433221 12
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 604 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd 604 (730)
-+- ..+++++-.+.+..+++|.|....+..
T Consensus 267 ~gl----eRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 267 YGL----ERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred cCC----ceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 222 579999998888888887554433333
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.4e-28 Score=268.12 Aligned_cols=307 Identities=18% Similarity=0.198 Sum_probs=236.3
Q ss_pred cCCCCCCCeeEeec--CCCcEEEEeecCCCCCcce-------eeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEe
Q 004789 338 STSLPDADSAVCAK--SLEKSVNLKLQLINEPSEC-------RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 408 (730)
Q Consensus 338 ~~~spdg~~lat~~--~dg~i~lWd~~~~~~~~~~-------~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iW 408 (730)
+..+|||..+|||| .|+.++||+.+..-..... ...++ ..|.+.|+|+.|+|||+|||+||.|+.|.||
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m--~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM--DDHDGSVNCVRFSPDGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee--ccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence 57899999999999 8999999998643211111 11111 2399999999999999999999999999999
Q ss_pred ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCC
Q 004789 409 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI 487 (730)
Q Consensus 409 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~ 487 (730)
..... . ...+ .|+ .| .-+++..+++..+.+|...
T Consensus 97 ~~~~~-~---------------------------------~~~~--------fgs~g~---~~~vE~wk~~~~l~~H~~D 131 (942)
T KOG0973|consen 97 ERAEI-G---------------------------------SGTV--------FGSTGG---AKNVESWKVVSILRGHDSD 131 (942)
T ss_pred eeccc-C---------------------------------Cccc--------cccccc---ccccceeeEEEEEecCCCc
Confidence 86531 0 0000 000 00 0123556788899999999
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
|..++|+|++ ++++++.|++|.+||..+.+.+..+.+|.+.|-.+.|.|-|+++++-+.|++|++|++..+...+ .+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~I 209 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SI 209 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--ee
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999987743221 11
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEE--Ee---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec-----CCC---
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLS--IH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-----DGK--- 633 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~--s~---dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-----dg~--- 633 (730)
. -+..+.+.+..+..+.|||||++|++ +- -.++.|.+-.+.+.-..+. +|..++.++.|+| +.+
T Consensus 210 t-~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 210 T-KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred c-cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCC
Confidence 1 11112222256789999999999998 32 2358899887777666665 4688999999997 111
Q ss_pred ---------EEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 634 ---------CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 634 ---------~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.+|+|+.|++|-||.....+++..+.. -.+..|. .++|+| ||..|..||.||+|.+..+++
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~-------lf~~SI~--DmsWsp-dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN-------LFNKSIV--DMSWSP-DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh-------hhcCcee--eeeEcC-CCCeEEEEecCCeEEEEEcch
Confidence 678999999999999877776655431 1134466 999999 899999999999999999987
Q ss_pred Cc
Q 004789 705 SE 706 (730)
Q Consensus 705 ~~ 706 (730)
.+
T Consensus 357 ~E 358 (942)
T KOG0973|consen 357 KE 358 (942)
T ss_pred HH
Confidence 64
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-27 Score=235.10 Aligned_cols=270 Identities=16% Similarity=0.254 Sum_probs=222.1
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC---EEEEEeCCCcEEEeecCCCccccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSNKQSLEEE 420 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~---~L~s~s~dg~I~iWd~~~~~~~~~~~ 420 (730)
++.+.+|+.||++|+||..+ .+.... .||+++|.+++|.-... .++++|.|.++++|.++.+.....
T Consensus 115 ~~~IltgsYDg~~riWd~~G-----k~~~~~---~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-- 184 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-----KSIKTI---VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-- 184 (423)
T ss_pred CceEEEeecCCeeEEEecCC-----ceEEEE---ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--
Confidence 78999999999999999963 333222 37999999988864333 599999999999998877654211
Q ss_pred cccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC-----------------------
Q 004789 421 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----------------------- 474 (730)
Q Consensus 421 ~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t----------------------- 474 (730)
.. ....||...|-+++.. |..+++|+ |.+|.+|+..+
T Consensus 185 ---------------~~--~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 185 ---------------AL--KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred ---------------HH--hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 00 0111799999999988 99999999 99999999321
Q ss_pred --ceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 004789 475 --FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 552 (730)
Q Consensus 475 --~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~v 552 (730)
+.++.++.+|..+|.++.|++.+.+++++.|.+|+.||+.++..+..+.+ ....+++.++|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence 23456788999999999999855999999999999999999999888874 467899999999999999999999999
Q ss_pred EEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEe
Q 004789 553 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYS 629 (730)
Q Consensus 553 wd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s 629 (730)
||.+++. ...+...+.+|. +.|.++.|+|...+.++ +.|+++++||+++.+ ++..+. +|...|.++.|.
T Consensus 327 ~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 327 WDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWN 398 (423)
T ss_pred cCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEecc
Confidence 9999864 233333678998 79999999998777665 499999999999877 777775 579999999996
Q ss_pred cCCCEEEEEEcCCeEEEEECC
Q 004789 630 CDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 630 pdg~~l~sgs~dg~I~iwd~~ 650 (730)
++.++++|+.|.+|+|+.-.
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -CCceEEeccCcceEEEeccc
Confidence 56789999999999998643
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=250.30 Aligned_cols=307 Identities=14% Similarity=0.156 Sum_probs=252.7
Q ss_pred eeEeecCCCcEEEEeecCCCCC----cceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccc
Q 004789 346 SAVCAKSLEKSVNLKLQLINEP----SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 421 (730)
Q Consensus 346 ~lat~~~dg~i~lWd~~~~~~~----~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~ 421 (730)
.|+. -.++++..+.++....+ .....+.. .||...|.++++|.+...+++| ..+.+++|+..+.++
T Consensus 337 ~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~--~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kc------ 406 (888)
T KOG0306|consen 337 TLVL-LANNTVEWYSLENSGKTSPEADRTSNIEI--GGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKC------ 406 (888)
T ss_pred eEEE-eecCceEEEEeccCCCCCccccccceeee--ccchhheeEEEeecCceeeeec-CCCcEEEEEccCcce------
Confidence 4444 56688999888752211 11223333 4699999999999998865555 456899998776665
Q ss_pred ccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-
Q 004789 422 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 497 (730)
Q Consensus 422 ~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg- 497 (730)
+++. ..+.+.+..|- ++++++|. .|.+.+||+.+...+.++++|.+.|++++.+||+
T Consensus 407 ---------------iRTi----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 407 ---------------IRTI----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred ---------------eEEe----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 2221 23467777887 78899999 8999999999999999999999999999999999
Q ss_pred eEEEEECCCcEEEEecCC-----CceE--------EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecce
Q 004789 498 LFAFGFDDSSILVHCPCT-----KKTK--------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~-----~~~~--------~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~ 564 (730)
.+++||.|.+|++||..- |... ++++ -...|.|+.+||||++|+++--|.+++||-+++ .
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt------l 540 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT------L 540 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc------e
Confidence 999999999999999642 2111 1222 357799999999999999999999999999998 2
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 643 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~ 643 (730)
.+.-...||. -+|.|+.++||++.+++ +.|.+|++|-+.=|.|-+.+. .|...|.++.|-|+...+++++.|+.
T Consensus 541 KFflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 541 KFFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred eeeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcce
Confidence 3333477898 79999999999999999 599999999999999988886 47999999999999999999999999
Q ss_pred EEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 644 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 644 I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
|+-||-..-+.+..+. ||+. .|+ +.+-+| +|.+++|+|.|.+|++|.-..
T Consensus 616 vKqWDg~kFe~iq~L~-------~H~~-ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 616 VKQWDGEKFEEIQKLD-------GHHS-EVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEeechhhhhhheeec-------cchh-eee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 9999999999888887 7754 599 888899 899999999999999999865
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=247.88 Aligned_cols=275 Identities=12% Similarity=0.155 Sum_probs=228.2
Q ss_pred cCCCC-CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 338 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~sp-dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
..+.| .+..+++++.|+.|+||++-. .+.|.+.. .||..+|.+++|+++|..++++|.|+.+++||++++++.
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrtf---~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRTF---KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEec---Ccceehhh---hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence 46778 899999999999999999974 34454433 369999999999999999999999999999998887762
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C-cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 492 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~-~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~ 492 (730)
..+ .....++|+.|. + +.+++|+ |+.|+.||+++++.++.+..|-+.|..+.
T Consensus 294 ---------------------~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 294 ---------------------SRF---HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT 349 (503)
T ss_pred ---------------------EEE---ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence 211 234567899999 4 6777777 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
|-++| .+++.+.|++++||+.+.+..++.+.. +.....++..+|++.+++.-+.|..|.++.+...-+. .....+
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~---nkkK~f 426 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL---NKKKRF 426 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc---CHhhhh
Confidence 99999 999999999999999998866654432 3345668999999999999999999999987653211 112245
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEE
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFD 648 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd 648 (730)
+||.. .+.-..+.|||||++|++| .||.+.+||.++.+.+..+.. |.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 427 eGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 427 EGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 66652 1456689999999999997 899999999999999888875 58999999999954 6799999999999996
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.9e-28 Score=223.79 Aligned_cols=237 Identities=15% Similarity=0.172 Sum_probs=197.1
Q ss_pred CCCCeeEEEEe---CcEEEEee-CCEEEEEEcCC-ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCc
Q 004789 445 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 517 (730)
Q Consensus 445 h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t-~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~ 517 (730)
-...+..++|+ .+.+++++ ||++++||... ..++..++.|...|.++.|++.. .+++++.|++|++|+..-++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 46788999999 66666666 99999999643 45788899999999999999877 88888999999999999999
Q ss_pred eEEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-cEEEEE
Q 004789 518 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI 595 (730)
Q Consensus 518 ~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-~~l~~s 595 (730)
.+.++.+|...|...+|+| ..+.++++|.|+++++||++.. .+.+. ...|. ..|.++.|+.-. ..+++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----gk~~~--i~ah~---~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----GKFMS--IEAHN---SEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----CceeE--EEecc---ceeEeecccccCCcEEEec
Confidence 9999999999999999999 5689999999999999999873 22322 45565 589999999854 455564
Q ss_pred -ecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCceEE-EEeecccccCCCCccc
Q 004789 596 -HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELR-CQINLTAYAQPGTISL 671 (730)
Q Consensus 596 -~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~~~~~~gh~~~ 671 (730)
.|+.|++||+++.+ ++..+ .+|.-.|..+.|||.. ..|++++.|-+++|||...+... .+. .||..
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--------~~HtE 279 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--------DHHTE 279 (311)
T ss_pred CCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--------hccce
Confidence 89999999998765 44455 4679999999999954 68899999999999998855433 333 35576
Q ss_pred ceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 672 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 672 ~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
-|. .+.|++.++.++|+++.|+.++||++
T Consensus 280 Fv~--g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 FVC--GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEe--ccccccccCceeeecccccceeeecc
Confidence 677 99999988899999999999999986
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=253.92 Aligned_cols=271 Identities=20% Similarity=0.229 Sum_probs=230.7
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
.+..+++++.|++|++|+.. .+......+ .||.+.|++++|..-+.+|++|+.|.++++||..++++
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~----~~~~i~~~l--~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C------- 283 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLN----NGYLILTRL--VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC------- 283 (537)
T ss_pred ecCeEEecCCCceeEEeecc----cceEEEeec--cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-------
Confidence 47788999999999999996 333333334 35999999999999888999999999999999877765
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 500 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~ 500 (730)
...+. +|.+.|.++...+.++++|+ |.+|++|++.++.++..+.+|.++|.++..+ + .++
T Consensus 284 --------------~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 284 --------------THSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred --------------EEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEE
Confidence 22222 79999999988888899999 9999999999999999999999999999998 5 999
Q ss_pred EEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe
Q 004789 501 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 580 (730)
Q Consensus 501 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v 580 (730)
+|+.|++|++||+.++++++.+.+|..+|.++.+.+. ..+++|+.|++|++||+++.. +++. ...+|. +-+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~-tl~~h~---~~v 416 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIH-TLQGHT---SLV 416 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhh-hhcCCc---ccc
Confidence 9999999999999999999999999999999988765 799999999999999999942 4555 667776 455
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 581 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 581 ~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
..+.+ .+++|++ +.|+.|++||..++++++.+... |...|..+++. ...+++++.||.+++||+.++++...+
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 44444 4678888 59999999999999999999763 56788888876 467889999999999999999887765
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=222.02 Aligned_cols=276 Identities=17% Similarity=0.185 Sum_probs=220.6
Q ss_pred EEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCC
Q 004789 396 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET 474 (730)
Q Consensus 396 L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t 474 (730)
+++|+....|.-+++...... .-+..+..+.+.+....|..+|++++.++.++|+|+ |.+|+|||+.+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-----------~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k 72 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-----------CTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRK 72 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-----------cccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccc
Confidence 567777766666665443310 001112223333333479999999999999999999 99999999999
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCC---eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 004789 475 FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 551 (730)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~ 551 (730)
...+..+..|.+.|+++.|.++- .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.|++-++.+.|+.++
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence 99999999999999999999877 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd 631 (730)
+||+-.|+......+. ...+.+.|+|.|.+++++..+.|-+|.+.+......+.. ...+.++.|- +
T Consensus 153 ~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~ 218 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN---PKRILCATFL-D 218 (362)
T ss_pred eehhhcCccceeeccC----------CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc---cccceeeeec-C
Confidence 9999887543322222 234569999999999998888899999988777666543 3556677764 5
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 632 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 632 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+..|++|.+|+.|.+||.+++.+...+. +| ...|-.+.+--.| ++.+|+|+|.||.|+|||+...
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH-~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFL-------AH-ENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeee-------cc-hhheeeeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 6789999999999999999988888776 55 5567733333345 6789999999999999999865
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.4e-27 Score=246.48 Aligned_cols=268 Identities=19% Similarity=0.235 Sum_probs=223.7
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
..+.+|+|. ...|++|+... +....+. ..+.+.|+++.|+++|.+|++|..+|.|.|||....+....
T Consensus 187 s~n~laVal-g~~vylW~~~s----~~v~~l~---~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---- 254 (484)
T KOG0305|consen 187 SANVLAVAL-GQSVYLWSASS----GSVTELC---SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---- 254 (484)
T ss_pred cCCeEEEEe-cceEEEEecCC----CceEEeE---ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc----
Confidence 345566554 37899999863 2332222 11479999999999999999999999999999876654111
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEE-EcCCCCCeEEEEEcCCC-eE
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LF 499 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~-~~~~~~~v~~i~~spdg-~l 499 (730)
+..+|...|.+++|++..+.+|+ ++.|..+|++..+.... +.+|...|..+.|++|+ ++
T Consensus 255 ------------------~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~l 316 (484)
T KOG0305|consen 255 ------------------LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQL 316 (484)
T ss_pred ------------------ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCee
Confidence 11138999999999999999999 99999999998776555 88999999999999999 99
Q ss_pred EEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC-CCCEEEEEe--CCCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 500 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 500 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s--~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
|+|+.|+.+.|||..+..++..+..|.+.|.+++|+| ....||+|+ .|+.|++||..++. .+..+..+
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~vdtg---- 387 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSVDTG---- 387 (484)
T ss_pred ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----EecccccC----
Confidence 9999999999999988888999999999999999999 456788864 69999999999864 34433343
Q ss_pred CCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 577 TTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~--s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
+.|..+.|++..+.|++ | .++.|.||+..+.+.+..+. +|...|..+++||||..+++|+.|.++++|++-..
T Consensus 388 -sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 -SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 68999999999887777 4 67899999999988888876 47899999999999999999999999999998764
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=252.58 Aligned_cols=276 Identities=18% Similarity=0.206 Sum_probs=234.2
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|...+.+..|. +.++++++.+++|++|+...+.. +... ..+|.+.|+++++. +.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~---------------------i~~~-l~GH~g~V~~l~~~~~~~ 262 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL---------------------ILTR-LVGHFGGVWGLAFPSGGD 262 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE---------------------EEee-ccCCCCCceeEEEecCCC
Confidence 67788889998 45699999999999998766543 2221 12799999999999 99
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 536 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 536 (730)
++++|+ |.++++||..+|++...+.+|...|.++...+. .+++|+.|.+|++|++.++.+++.+.+|.++|+++..+
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 999999 999999999999999999999999999987655 88889999999999999999999999999999999997
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeee
Q 004789 537 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQL 614 (730)
Q Consensus 537 d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~-~~~~~~ 614 (730)
+.++++|+.|++|++||+.++ .++. ...+|. +.|.++.+.+. ..+++ +.|++|++||+++. +++.++
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~-----~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTG-----KCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhc-----eeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 779999999999999999974 4555 667888 89999988765 67777 58999999999999 888888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 694 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D 694 (730)
.. |...+.++. ..+++|++++.||+|++||..+++.+..+. +++.+.|. .+++. ...+++++.|
T Consensus 410 ~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~-------~~~~~~v~--~l~~~---~~~il~s~~~ 473 (537)
T KOG0274|consen 410 QG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLE-------GRHVGGVS--ALALG---KEEILCSSDD 473 (537)
T ss_pred cC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeec-------cCCcccEE--EeecC---cceEEEEecC
Confidence 64 567675554 457899999999999999999999999987 42344566 55543 3678899999
Q ss_pred CcEEEEeCCCCcee
Q 004789 695 GRVHVIEPLESEVE 708 (730)
Q Consensus 695 g~I~iWd~~~~~~~ 708 (730)
|++++||+.+++..
T Consensus 474 ~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 474 GSVKLWDLRSGTLI 487 (537)
T ss_pred CeeEEEecccCchh
Confidence 99999999998754
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-27 Score=255.46 Aligned_cols=241 Identities=15% Similarity=0.203 Sum_probs=200.3
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC--------------------------------c-------------
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------------------F------------- 475 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t--------------------------------~------------- 475 (730)
.|.++|+++.|+ |+|||+|+ |+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999 99999999 99999998754 0
Q ss_pred ---------------eEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC-CCC
Q 004789 476 ---------------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN 539 (730)
Q Consensus 476 ---------------~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d~~ 539 (730)
++++.+.+|.+.|.++.|+.+++|++++.|.+|++|++...++++.|. |.+.|+||+|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 011345689999999999999999999999999999999999999998 999999999999 779
Q ss_pred EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC
Q 004789 540 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 618 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~ 618 (730)
++++|+-||.|+||++...+......++ .-|++++|.|||++.++| .+|.+++|+....+....+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999999999999999884433322222 579999999999999996 89999999998877665544322
Q ss_pred C------CCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 619 M------DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 619 h------~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
+ ...|+.+.|.|.. ..|++.+.|..|+|||..+..++..+. |.+... ..+...|+. ||++|+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK-------G~~n~~-SQ~~Asfs~-Dgk~IVs~ 564 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK-------GFRNTS-SQISASFSS-DGKHIVSA 564 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc-------ccccCC-cceeeeEcc-CCCEEEEe
Confidence 2 3379999998743 457788899999999999888888887 443321 123678888 99999999
Q ss_pred eCCCcEEEEeCCC
Q 004789 692 LTNGRVHVIEPLE 704 (730)
Q Consensus 692 s~Dg~I~iWd~~~ 704 (730)
++|..|+||+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999843
No 73
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.7e-26 Score=248.48 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=209.6
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEe-ecccCCCCCCeeEEEEe---
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--- 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~h~~~V~~l~~s--- 455 (730)
|-..|.....++++..+++++.+.....|+...+.. .++....|+... .....+|.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 445667777888877788888888888998655432 233333333211 01112799999999998
Q ss_pred CcEEEEee-CCEEEEEEcCCc-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCC
Q 004789 456 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 525 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~-------~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h 525 (730)
+++|++|+ |++|++||+.++ ..+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 67899999 999999999765 3567888999999999999986 8999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E----ecCcE
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI 600 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s----~dg~I 600 (730)
...|.+++|+|+|.+|++++.|+.|++||+++++. +. ...+|.. ..+..+.|.+++..+++ | .|+.|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~-tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VS-SVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EE-EEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999999999999998542 22 2345542 23457889998877776 4 36899
Q ss_pred EEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEE
Q 004789 601 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 678 (730)
Q Consensus 601 ~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 678 (730)
++||+++.. ++..... .....+....|++++.+|++|+ .||.|++||+.++++...... .+..++. ++
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-------~s~~~~~--g~ 309 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-------SSVEPHK--GL 309 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-------cCCCCCc--ce
Confidence 999998754 3333322 2245566778899999999887 599999999999987766542 1234456 77
Q ss_pred EEec
Q 004789 679 AAHP 682 (730)
Q Consensus 679 ~~sp 682 (730)
+|.|
T Consensus 310 ~~~p 313 (493)
T PTZ00421 310 CMMP 313 (493)
T ss_pred Eecc
Confidence 7777
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-27 Score=247.43 Aligned_cols=328 Identities=16% Similarity=0.179 Sum_probs=247.1
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCC-CcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINE-PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~-~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
.-|.+++|.|||.||.|++|++..... ..+.....++ .|.+.|+.++...+|+.|+++|.|.+|++|+...+..
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme--~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--- 107 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME--HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--- 107 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchhhhhh--hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---
Confidence 456788999999999999999974332 1121122222 2999999999999999999999999999999765531
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce--EEEE--------Ec-C
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLAT--------FA-N 483 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~--~~~~--------~~-~ 483 (730)
.++.. ...|...|.|+++. ...+|+|+ |+.|.+||++++. .+.+ +. +
T Consensus 108 ----------------~c~st--ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 108 ----------------FCMST--IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred ----------------hhHhh--hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 11111 11599999999994 77889999 9999999999873 2322 22 7
Q ss_pred CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec
Q 004789 484 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 484 ~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~ 562 (730)
+...|++++.++.| .|++|+..+.+++||.++++.+..++||+..|.++..++||+.+++++.||+|++||+..
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq----- 244 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ----- 244 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----
Confidence 78899999999999 999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
.+++. ....|. ..|+++..+|+-..+++| .||.|..-|+++.. ....+. ...+|..+..+...+-+-+++.
T Consensus 245 QrCl~-T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTt 317 (735)
T KOG0308|consen 245 QRCLA-TYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTT 317 (735)
T ss_pred cceee-eEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceeeec
Confidence 34555 455666 579999999999999995 99999999998843 333333 2677777777754444567778
Q ss_pred CCeEEEEECCCceEEEEee------------------cccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 641 SGHVKVFDTSTLELRCQIN------------------LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 641 dg~I~iwd~~~~~~~~~~~------------------~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
|+.|.-|.......+.... .+.++..| +..+. ..+.-. +.++++|-..+|.+.+||+
T Consensus 318 ds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai~--k~~mL~-dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 318 DSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAIK--KHAMLN-DKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred cccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhhh--hhhhhc-CcceEeeecCCCCEEEEEe
Confidence 9999999765322111000 01111112 11121 222233 6789999999999999999
Q ss_pred CCCce
Q 004789 703 LESEV 707 (730)
Q Consensus 703 ~~~~~ 707 (730)
.....
T Consensus 393 l~~~~ 397 (735)
T KOG0308|consen 393 LACVK 397 (735)
T ss_pred eeeee
Confidence 77643
No 75
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.5e-25 Score=202.64 Aligned_cols=304 Identities=14% Similarity=0.114 Sum_probs=225.8
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
.+..|.+++|+|.|...++|+...+.+|.....-............| ..-.+. ....|.+.|+|.+|+ |+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~p-----p~v~~k---r~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQP-----PSVLCK---RNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCC-----CeEEee---eccccCccEEEEEecCccC
Confidence 57889999999999999999999999987543322111111111111 000011 122699999999999 99
Q ss_pred EEEEee-CCEEEEEEcCCceE-----EEEEcCCCCCeEEEEEcCCC-----eEEEEE-CCCcEEEEecCCCceEEEEcCC
Q 004789 458 HLFSAS-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQD-----LFAFGF-DDSSILVHCPCTKKTKAKLKGH 525 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~-----~~~~~~~~~~v~~i~~spdg-----~l~sgs-~dg~I~iwd~~~~~~~~~~~~h 525 (730)
+|++|+ |.+|++...+...+ -..+.-|.+.|..++|..+. .|++++ .|..|++-|...|+..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999 99999987654332 23566799999999996542 566554 5778999999999999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 604 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd 604 (730)
++.|.++ ++-+|-.+++|+.|.+|++||++-...+ ..+...+.+-.-.+..|.+++..|.|+.|++| .|....+||
T Consensus 183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cccEEEE-EEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 9999987 5667889999999999999999874322 22221111111012579999999999999997 889999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC
Q 004789 605 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 684 (730)
Q Consensus 605 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~ 684 (730)
++.++.++.+. .|...|.++.|||...|+++++.|..|++-|+... +...+. ..+...| ...+. .+.|+| .
T Consensus 260 irg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~--~~vv~eh-kdk~i--~~rwh~-~ 330 (350)
T KOG0641|consen 260 IRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELP--IMVVAEH-KDKAI--QCRWHP-Q 330 (350)
T ss_pred eeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCc--eEEEEec-cCceE--EEEecC-c
Confidence 99999999996 46999999999999999999999999999998743 222211 1111134 44444 799999 4
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 004789 685 PNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 685 ~~~las~s~Dg~I~iWd~~ 703 (730)
.--|++.+.|.++.+|-+.
T Consensus 331 d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeeeccCcceEEEeccC
Confidence 5678888999999999764
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=234.49 Aligned_cols=281 Identities=19% Similarity=0.245 Sum_probs=229.1
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
..+.|.+++|||...+=++....-.+.||+..+..... ++. .....|.++.|. |+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k---------------------~~s--rFk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK---------------------TFS--RFKDVVYSVDFRSDGR 81 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh---------------------hHH--hhccceeEEEeecCCe
Confidence 45789999999976653433444567787765544311 111 356789999998 88
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
++++|. .|.|+++|+.+...++.+.+|..+|..+.|+|++ .+++|+.|+.+++||+.+......+.+|++.|.|.+|
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 888888 7999999988877888999999999999999998 8899999999999999998876688999999999999
Q ss_pred eCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 004789 535 SLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 535 spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~ 613 (730)
+|.. ..+++|+.||.|++||+++.. ..+. ...|. .+|..+.+-|.|..++++..+.+++||+.+|...-.
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~--elnhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT----SRVV--ELNHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC----ceeE--EecCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 9954 578999999999999999832 2222 23444 589999999999999998889999999986655433
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
... .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+.. .++|- +++.+| ++..++.|..
T Consensus 233 ~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvL--siavs~-dd~t~viGms 299 (487)
T KOG0310|consen 233 SMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVL--SIAVSP-DDQTVVIGMS 299 (487)
T ss_pred hhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------cccee--eEEecC-CCceEEEecc
Confidence 332 3799999999999999999999999999999999998888764 34566 899999 8899999999
Q ss_pred CCcEEEEeCCCC
Q 004789 694 NGRVHVIEPLES 705 (730)
Q Consensus 694 Dg~I~iWd~~~~ 705 (730)
||.+.+=+....
T Consensus 300 nGlv~~rr~~~k 311 (487)
T KOG0310|consen 300 NGLVSIRRREVK 311 (487)
T ss_pred cceeeeehhhcc
Confidence 999887754433
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.5e-27 Score=217.26 Aligned_cols=260 Identities=15% Similarity=0.206 Sum_probs=211.6
Q ss_pred CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecC
Q 004789 353 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 431 (730)
Q Consensus 353 dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~ 431 (730)
.|.+.|-++.+.....+++.+. -.+.+..++|+++. ..+++++.||++++||...... .+..|+
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---------Pi~~~k- 101 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---------PIHKFK- 101 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------chhHHH-
Confidence 4788888886544455666655 58899999999965 4788999999999999543321 112222
Q ss_pred CCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECC
Q 004789 432 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 505 (730)
Q Consensus 432 ~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~d 505 (730)
.|...|.++.|+ +..+++++ |++|++|+...+..++++.+|...|...+|+|.. .+++++.|
T Consensus 102 ------------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 102 ------------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred ------------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 699999999999 66777888 9999999999999999999999999999999987 99999999
Q ss_pred CcEEEEecCCCceEEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEE
Q 004789 506 SSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 584 (730)
Q Consensus 506 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~ 584 (730)
+++++||++.......+..|...|.++.|+. +.+.+++|+.|+.|+.||++.-+ .++. ...+|. -.|..+.
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~-eL~gh~---~AVRkvk 241 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLF-ELNGHG---LAVRKVK 241 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccce-eecCCc---eEEEEEe
Confidence 9999999987544445888999999999987 56789999999999999999833 4455 347887 7999999
Q ss_pred EecCCcE-EEE-EecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 004789 585 FHPDQIH-LLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 585 ~spdg~~-l~~-s~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~ 649 (730)
|||...- |++ +.|=+++|||...+.. +.++. .|...+..+.||+ ++.++|+.+.|+.++||+.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 9997554 445 4899999999975543 33332 5788999999996 6789999999999999984
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.7e-27 Score=222.86 Aligned_cols=285 Identities=12% Similarity=0.143 Sum_probs=224.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCC------C-------CCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLI------N-------EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 404 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~------~-------~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~ 404 (730)
.+++|||..+|||+.|-.|+|.|+... . ......--++ ..|.++|+++.|+|....|++|+.|++
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl--YDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL--YDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh--hhccCcccceeecchhheEEeccCCCe
Confidence 589999999999999999999998721 0 0010111122 249999999999999999999999999
Q ss_pred EEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEE
Q 004789 405 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 481 (730)
Q Consensus 405 I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~ 481 (730)
|+++|+....... ..+. + ....+|.++.|+ |++|+.|. ..++++||++|.++...-
T Consensus 196 vKlFDfsK~saKr------------------A~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 196 VKLFDFSKTSAKR------------------AFKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred EEEEecccHHHHH------------------HHHH-h--hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 9999986543200 0000 1 245789999999 99999999 589999999999887665
Q ss_pred c---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC-CC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 004789 482 A---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQ-NRITCLAYSLSLNVLVSSGADAQLCVWDA 555 (730)
Q Consensus 482 ~---~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~-~~V~~l~~spd~~~l~s~s~dg~I~vwd~ 555 (730)
. .|.+.|+++.+++.| ..++|+.||.|++||--+++|+.++.. |. ..|.+..|..+|+++++.+.|..+++|.+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 4 688999999999999 999999999999999999999988854 54 57899999999999999999999999999
Q ss_pred CCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC
Q 004789 556 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 633 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 633 (730)
.++.......=. -..+.. .--+...|+....+++.- ..+.+.-||.++...+..+.. +|++.+..+.-||.+.
T Consensus 335 ~t~R~l~~YtGA-g~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 335 STGRMLKEYTGA-GTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred cCCceEEEEecC-Ccccch---hhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 996433211100 001111 123456788778888873 567899999999887766654 6899999999999999
Q ss_pred EEEEEEcCCeEEEEECC
Q 004789 634 CIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~~ 650 (730)
-+++++.|..+++|-.+
T Consensus 410 ~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceeeecccceeeeeeec
Confidence 99999999999999644
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.1e-25 Score=201.55 Aligned_cols=295 Identities=14% Similarity=0.112 Sum_probs=232.1
Q ss_pred CCCCCccCCCCCC---cccCCCCCCCeeEeecCCCcEEEEeecCCCCCc------------ceeeeecCCCCCCCcEEEE
Q 004789 323 SNDSSCFNDNNQS---RESTSLPDADSAVCAKSLEKSVNLKLQLINEPS------------ECRTLLLPDNSFGGRVVRL 387 (730)
Q Consensus 323 ~~~~~~~~~~~~~---~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~------------~~~~~~l~~~gh~~~V~~v 387 (730)
...+.+++..+.+ +...|-|.|...|+|++..+.||-......... .|.+. .-|.+.|.|.
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~----khhkgsiyc~ 95 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN----KHHKGSIYCT 95 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec----cccCccEEEE
Confidence 3355566544433 335899999999999999999998765433221 11221 2389999999
Q ss_pred EEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe------CcEEEE
Q 004789 388 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFS 461 (730)
Q Consensus 388 ~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s------~~~l~s 461 (730)
+|||+|+.+++|+.|.+|++..++...+... |.-+... -|.+.|..++|- +..|++
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~---------------g~dle~n---mhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNAT---------------GHDLEFN---MHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred EecCccCeEEecCCCceEEEEeccccccccc---------------Ccceeee---ecCCceeeeEEecCCCcCceEEEe
Confidence 9999999999999999999976655443211 1111111 489999999997 667888
Q ss_pred ee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC-------CCCCeEE
Q 004789 462 AS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITC 531 (730)
Q Consensus 462 ~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-------h~~~V~~ 531 (730)
++ |-.|++-|..+|+..+.+.+|.+.|.++ ++-+| .+++|+.|.+|++||++-..++.++.. ..+.|.+
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 88 6788888999999999999999999665 45567 999999999999999999888887742 2367999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 610 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~ 610 (730)
++..|.|++|++|-.|....+||++.+ +.++ .+..|. ..|.++.|+|...++++ +.|..|++-|+. |..
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~-----r~iq-~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq-gdl 306 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGG-----RMIQ-RFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDL 306 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCC-----ceee-eeCCCc---cceeEEEeCCCceEEEEecccceEEEeecc-cch
Confidence 999999999999999999999999995 4555 455666 79999999999999999 589999999985 332
Q ss_pred ---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 611 ---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 611 ---~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+.......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2223334678999999999999889999999999999764
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=9.4e-26 Score=211.75 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=217.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.++.-+|..|.+++.|.++.+|-..+ ++.+-++ .||++.|||+..+-+.++|++|+.|.++++||++++++..
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~n---GerlGty----~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLN---GERLGTY----DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecC---Cceeeee----cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 37888999999999999999998853 3344444 3699999999999999999999999999999998887622
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeC------CEEEEEEcC-------CceEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE-------TFQTLATFA 482 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sd------g~I~vwd~~-------t~~~~~~~~ 482 (730)
. | ....+|..+.|+ |++++...| +.|.++|++ ..++...+.
T Consensus 89 ~----------~--------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 89 T----------W--------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred E----------e--------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 1 2 255789999999 666666553 579999997 456688888
Q ss_pred CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce
Q 004789 483 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 483 ~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
.+...++.+.|.|-+ .|++|..||.|.+||+++| +.+...+.|...|+.+.+++|..++++++.|.+-++||..+-+.
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence 899999999999999 9999999999999999998 45555677999999999999999999999999999999998432
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCCC------------ceeeeecCCCCCCCeEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTL------------NHTSQLVPDKMDLPITY 625 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~d-g~I~iwd~~~~------------~~~~~~~~~~h~~~v~~ 625 (730)
++ ..... .+|++.+++|....++.+ .+ .-|.--+.+.+ +.+..+. +|-++|++
T Consensus 225 -----~K-ty~te----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINs 292 (327)
T KOG0643|consen 225 -----LK-TYTTE----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINS 292 (327)
T ss_pred -----EE-Eeeec----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcce
Confidence 23 22222 479999999987777763 22 11322222223 2333343 57999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 626 ATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 626 ~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
++|+|+|+..++|++||.|++...+..
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEeccc
Confidence 999999999999999999999876654
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=3.7e-27 Score=218.90 Aligned_cols=273 Identities=14% Similarity=0.153 Sum_probs=225.5
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
...|||-+|++++.|+.--+-+-+. +.-+-++ .||++.||+...+.+...-|+++.|-+-+|||.-++..
T Consensus 24 ~itp~g~flisa~kd~~pmlr~g~t---gdwigtf----eghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--- 93 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPMLRNGDT---GDWIGTF----EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--- 93 (334)
T ss_pred CCCCCceEEEEeccCCCchhccCCC---CCcEEee----eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh---
Confidence 4678999999999998766554432 1122232 26999999999999998889999998888888666554
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce-EEEEEcCCCCCeEEEEEc
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFILL 494 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~-~~~~~~~~~~~v~~i~~s 494 (730)
+..+ .|..-|.+++|+ .++|++|+ +..++|||++..+ +...+.+|.+.|..+.|.
T Consensus 94 ------------------lhsf---~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 94 ------------------LHSF---EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC 152 (334)
T ss_pred ------------------hhhh---hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe
Confidence 2211 488899999999 88999999 9999999998654 567788999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
... .|++.+.|++|++||.++++.++++. ...+|+++.++++|++|.++ ..+.|.+||..+....+...+.
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P------ 224 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP------ 224 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc------
Confidence 888 88888999999999999999999997 56789999999999877654 4678999999985444333332
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 574 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
..|.+..++|+...+++ +.|..++.||..+++.+..+. .+|.++|.++.|+|||...++|++||+|++|.+..+
T Consensus 225 ----~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 225 ----CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ----cccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 46889999999877777 589999999999999988863 367999999999999999999999999999998876
Q ss_pred eEE
Q 004789 653 ELR 655 (730)
Q Consensus 653 ~~~ 655 (730)
+.-
T Consensus 300 ~~~ 302 (334)
T KOG0278|consen 300 KTY 302 (334)
T ss_pred Cch
Confidence 543
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=232.18 Aligned_cols=291 Identities=19% Similarity=0.203 Sum_probs=217.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
...-|.|-.+++|+.|.+|++||+.+....-...+...+. ....|.+++||+.|..|++.+.....+|+|-.......
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 4667889999999999999999998654333222222222 46679999999999999999999999999976554311
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce-EEEEEc-----CCCCC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFA-----NPPPI 487 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~-~~~~~~-----~~~~~ 487 (730)
. -.-+..+.-.....||...++|.+|+ .+.+++++ ||++++||+...+ ....++ +..-.
T Consensus 251 ~-----------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 251 F-----------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred e-----------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 1 00011111112223899999999999 55677888 9999999997654 233332 22346
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCc---eEEEEcCCCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 561 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~---~~~~~~~h~~--~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~ 561 (730)
++.++|+||| .||+|..||+|.+|+..+.. ....-..|.. .|+||+|++||++|++-+.|+++++||++..+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-- 397 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-- 397 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc--
Confidence 7999999999 99999999999999975432 2233355776 89999999999999999999999999999853
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCCcEEEEE-------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCE
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 634 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 634 (730)
+++. ...+-. ...+-+.++|||+.+.|++| ..|.+.+||..+...+..+... ...|..+.|+|.-+.
T Consensus 398 --kpL~-~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 398 --KPLN-VRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPKLNQ 471 (641)
T ss_pred --cchh-hhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecchhhh
Confidence 3333 111110 01356789999999999984 2367999999998888887653 788999999999999
Q ss_pred EEEEEcCCeEEEEEC
Q 004789 635 IYVSCKSGHVKVFDT 649 (730)
Q Consensus 635 l~sgs~dg~I~iwd~ 649 (730)
|++|+.||.++||--
T Consensus 472 i~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 472 IFAGSGDGTAHVYYD 486 (641)
T ss_pred eeeecCCCceEEEEC
Confidence 999999999998743
No 83
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.9e-25 Score=242.89 Aligned_cols=287 Identities=11% Similarity=0.073 Sum_probs=210.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCC------CCcceee--eecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEe
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRT--LLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLW 408 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~------~~~~~~~--~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iW 408 (730)
...++|+..+++++.+..+..|+..+.. ..+.... ..+ .||.+.|++++|+| ++++|++|+.|++|++|
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l--~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL--LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE--eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 4567887778888888888888765321 0111110 011 46999999999999 88999999999999999
Q ss_pred ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCC
Q 004789 409 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP 484 (730)
Q Consensus 409 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~ 484 (730)
|+..+..... ....+..+ .+|...|.+++|+ +++|++++ |++|++||+.+++.+..+.+|
T Consensus 104 di~~~~~~~~--------------~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 104 GIPEEGLTQN--------------ISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred ecCCCccccc--------------cCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 9876532000 00111111 2699999999999 36899999 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCC-eEEEEEeCCCCEEEEEe----CCCcEEEEEcCCC
Q 004789 485 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGW 558 (730)
Q Consensus 485 ~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s~s----~dg~I~vwd~~~~ 558 (730)
...|.+++|+|+| .|++|+.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 9999999999999 9999999999999999999999999888765 45678999888877654 4789999999874
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
. .++........ ..+....|++++.++++ + .|+.|++||+.+++.+..... .+..++..++|.|.-..
T Consensus 248 ~----~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~~-- 317 (493)
T PTZ00421 248 A----SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWSL-- 317 (493)
T ss_pred C----CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccccc--
Confidence 3 22221111222 35667789999999888 4 499999999999887766543 24667888888885321
Q ss_pred EEEcCCeEEEEECCCc
Q 004789 637 VSCKSGHVKVFDTSTL 652 (730)
Q Consensus 637 sgs~dg~I~iwd~~~~ 652 (730)
-...--..++|.+...
T Consensus 318 dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 318 DTRKCEIARFYALTYH 333 (493)
T ss_pred cccceeeeEEEEecCC
Confidence 1111223366666543
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.7e-25 Score=211.76 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=204.1
Q ss_pred CCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC--CCcEEEEecCCCce
Q 004789 445 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 518 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~--dg~I~iwd~~~~~~ 518 (730)
....|.++.|+ |.++++++ |.++++||..+++.++++..+...+..+.|.... .++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46789999999 99999988 8899999999999999999988889888987776 6665555 88999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe-c
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-E 597 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~-d 597 (730)
++.+.||...|+++..+|-+..+++++.|++|++||++..+.. ..+. . ..-..++|.|.|-++|++. .
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq--g~l~---~------~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ--GLLN---L------SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc--eEEe---c------CCCcceeECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999974321 1121 1 1233689999999999964 4
Q ss_pred CcEEEEeCCCC--ceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCccccee
Q 004789 598 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 674 (730)
Q Consensus 598 g~I~iwd~~~~--~~~~~~~~~-~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 674 (730)
+.|++||++.. .+..++... ......+.+.|||||++|+.++..+.+++.|.-+|.....+.. +....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-------~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-------YPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee-------ccCCCCc
Confidence 49999999864 344455433 3367889999999999999999999999999999998888873 3222222
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 675 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 675 ~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
.+..+|.| |++++++|++||+|.+|+++++...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEe
Confidence 35889999 8999999999999999999999764
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.9e-25 Score=235.01 Aligned_cols=335 Identities=16% Similarity=0.167 Sum_probs=261.0
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCC-CcEEEEEEecCCCE-EEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~-~~V~~v~fspdg~~-L~s~s~dg~I~iWd~~~~~~ 415 (730)
...+|=-..+|.|-.+|+|.++++.. .+....+. |. +.|++++|..||+. +|+|+..|.+.+||++..+.
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~---dkil~sFk-----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKF---DKILMSFK-----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEccc---CcEEEEEE-----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence 45678889999999999999999973 55666766 64 99999999999985 55666679999999988765
Q ss_pred ccc---c-------------------ccccce--eeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEE
Q 004789 416 SLE---E-------------------ENVNME--SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKI 467 (730)
Q Consensus 416 ~~~---~-------------------~~~~~~--~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I 467 (730)
... . ...+.+ .-++|..+|.........||..+-.|+.|. |.++.+++ |++.
T Consensus 280 ~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 280 INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 432 0 011112 234565555444333455899999999988 77777777 7766
Q ss_pred EEEEcC-----------------------------------------------------------------CceE-EEEE
Q 004789 468 SIFSLE-----------------------------------------------------------------TFQT-LATF 481 (730)
Q Consensus 468 ~vwd~~-----------------------------------------------------------------t~~~-~~~~ 481 (730)
+.+++. +... ...+
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 555431 1110 0011
Q ss_pred c-----CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE---cCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 004789 482 A-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQLCV 552 (730)
Q Consensus 482 ~-----~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~spd~~~l~s~s~dg~I~v 552 (730)
. .....+++++.++.| +.+.|+..|.|-+|++++|-....+ ..|.++|++++...-++.+++++.+|.+.+
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 1 123567899999999 9999999999999999999888888 479999999999988899999999999999
Q ss_pred EEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC
Q 004789 553 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 553 wd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd 631 (730)
||...... +.....+ ..+.++..+.....++. ..|-.|+++|..+.+.++.+.+ |...|+.++||||
T Consensus 520 w~f~~k~l-----~~~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~D 587 (910)
T KOG1539|consen 520 WDFKKKVL-----KKSLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPD 587 (910)
T ss_pred EecCCcce-----eeeeccC-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCC
Confidence 99998442 2222233 46888999888888887 5888899999999999999974 6999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC-CcEEEEeCCC
Q 004789 632 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE 704 (730)
Q Consensus 632 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D-g~I~iWd~~~ 704 (730)
|++|++++.|++|++||+.++.++-.+.. +.+.. .+.|+| +|.+|||...| ..|++|.-.+
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~v---------d~~~~--sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLLV---------DSPCT--SLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEec---------CCcce--eeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 99999999999999999999999877653 33444 899999 89999999988 6799997543
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=7.8e-27 Score=231.25 Aligned_cols=275 Identities=16% Similarity=0.137 Sum_probs=224.0
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+.++...|++|+.|..|++|++.... ..... ++ .|..+.|+++.|.+++.++++++.|+.+++|++...+..
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~-tL--aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~- 254 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEK--SELIS-TL--AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR- 254 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccch--hhhhh-hh--hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh-
Confidence 5788899999999999999999997422 11111 12 246788999999999999999999999999998877651
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE-EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~-l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
.++ .+|++.|+++.|. +.. +++|+ |.+|++||+....|.+++- ....+..|..+
T Consensus 255 --------------------~TL--sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 255 --------------------HTL--SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred --------------------hhh--cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 111 1799999999999 544 99999 9999999999988887764 33344555555
Q ss_pred CCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC
Q 004789 495 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 495 pdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
+. .+++|-.|+.|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++.+......-..+..+
T Consensus 312 ~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a-- 387 (459)
T KOG0288|consen 312 IS-DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA-- 387 (459)
T ss_pred ce-eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc--
Confidence 22 78999999999999999999999988665 899999999999999999999999999999543322222212333
Q ss_pred CCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 575 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 575 ~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
...+.+.|||++.|+++ +.||.|+||++.++++...+........|++++|+|.|..|++++.++.+.+|.
T Consensus 388 ---sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 388 ---SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 34889999999999999 599999999999999988887654445799999999999999999999999993
No 87
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=233.33 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=184.2
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEE-------------------------------------cCCCCCeEEEEEcCCC-
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATF-------------------------------------ANPPPIATYFILLPQD- 497 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~-------------------------------------~~~~~~v~~i~~spdg- 497 (730)
.-+++++ |++|++||++.+..-..+ -.....+.+++++|+|
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 3477788 999999998753211100 0224478999999999
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp---d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
+||+|..-|++++|++..-+.+..+..|...|.|+.|+. ..++|++++.|+-|.|||+... ..+.....+|.
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HS 547 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHS 547 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcccc
Confidence 999999999999999999998899999999999999985 3478999999999999999762 33333778888
Q ss_pred CCCCCeEEEEEecCC--cEEEE-EecCcEEEEeCCCCceeeeecCCC---CCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 575 PETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---MDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 575 ~~~~~v~~l~~spdg--~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~---h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
..|+++.|.-+| ..+++ |.|..|.+--.+.......+..+. ....++.|+..|+.+++++++.|..|+||+
T Consensus 548 ---ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 548 ---SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ---cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 799999998876 56666 577776543322111111222111 166789999999999999999999999999
Q ss_pred CCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 004789 649 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
+.+|+..+.+.... +| .+. .+.|...| .+.|+|+.+.|.++.++|..++++.-.+
T Consensus 625 i~sgKq~k~FKgs~----~~-eG~--lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSR----DH-EGD--LIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred ccccceeeeecccc----cC-CCc--eEEEEECC-CccEEEEeecCCceEEEEeccchhhhhh
Confidence 99999999988321 22 233 34788899 7999999999999999999999875443
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.2e-25 Score=236.03 Aligned_cols=275 Identities=15% Similarity=0.172 Sum_probs=228.7
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeE-EEEe-
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~-l~~s- 455 (730)
.||...|..+++.+.. .++++|.||++++|+-..++.... ....+|.+.|.+ ++|.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~---------------------~~~~~~~g~i~~~i~y~e 68 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET---------------------HAFEGPKGFIANSICYAE 68 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc---------------------eecccCcceeeccceecc
Confidence 4699999999987776 589999999999998765554110 011146666666 6666
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
+..+++|+ |+.|.+|...+..+..++.+|...|.|++...++.+++||.|.++++|-. +++...+.+|...|+++
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeee
Confidence 45588888 99999999999999999999999999999877778899999999999975 56777899999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~ 612 (730)
+.-|++ .++||+.|++|++|.-.+ .++ ++.+|. +.|+.+++-+++.++-++.||.|++|++ +++++.
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999988 889999999999998754 345 678898 8999999999988877789999999999 788887
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
++. +|...++++....++..++++++|++++||+.. ++.+.+... ...|| ++.+-+ +| -+++|+
T Consensus 214 ~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-Ng-DIvvg~ 277 (745)
T KOG0301|consen 214 EMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NG-DIVVGG 277 (745)
T ss_pred eee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CC-CEEEec
Confidence 775 579999999988889999999999999999987 666666532 33588 777776 44 578888
Q ss_pred CCCcEEEEeCCCC
Q 004789 693 TNGRVHVIEPLES 705 (730)
Q Consensus 693 ~Dg~I~iWd~~~~ 705 (730)
+||.||||.....
T Consensus 278 SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 278 SDGRVRVFTVDKD 290 (745)
T ss_pred cCceEEEEEeccc
Confidence 9999999998743
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=209.71 Aligned_cols=245 Identities=15% Similarity=0.191 Sum_probs=209.9
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEE--EcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~--~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~ 516 (730)
+|...|.+++|+ |..|++|+ |+++.+|+++..+.... ..+|.+.|-.++|+|.. .+++++.|.+|++||++++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 688999999999 99999999 99999999988755544 35889899999999887 9999999999999999999
Q ss_pred ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E
Q 004789 517 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 595 (730)
Q Consensus 517 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s 595 (730)
++........+.+ -+.|+|+|.++++++.|..|.+.|.++.+........ ..+..++|+.++.+++. .
T Consensus 98 k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----------~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 98 KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----------FEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----------ceeeeeeecCCCCEEEEec
Confidence 9998887544444 5679999999999999999999999985433322222 46778999987777776 4
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 596 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 596 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
..|.|.|......+++..+.. |.....++.|+|+|+++|+|+.|..+.+||+..--++..+... +-+|+
T Consensus 167 GlG~v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--------dwpVR- 235 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--------DWPVR- 235 (313)
T ss_pred CCceEEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--------cCceE-
Confidence 679999999999999988874 6899999999999999999999999999999887666666522 66788
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeecc
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~ 712 (730)
.++|+. +|++||+||.|..|-|=++++|+..|...
T Consensus 236 -TlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 236 -TLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred -EEEecc-CcceeeccCccceEEeEecccCCeEEEee
Confidence 999999 89999999999999999999999888864
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.9e-25 Score=223.26 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=229.9
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCC-----CCeeEeecccCCCCCCeeEEEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-----SKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
|.-+|.+|+++|++++.++++.+|+|.-|++.++..... +|... .+...+... .+|...|.+++.
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~---------i~~~~ev~k~~~~~~k~~r-~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRY---------IIERDEVLKSHGNPLKESR-KGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCccccc---------ccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence 999999999999999999999999999999988874211 11110 011111110 168899999999
Q ss_pred e--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE
Q 004789 455 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 530 (730)
Q Consensus 455 s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 530 (730)
+ |+||++|+ |..|.||+..+.+.++.+.+|.+.|.+++|-..- .+++++.|++|++|+++....+.++.+|.+.|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 9 99999999 9999999999999999999999999999998766 999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce
Q 004789 531 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 610 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~ 610 (730)
+|....-++.+-+|+.|+++++|++... .+-++.++. +.+-|++|-.+..++..+.+|.|.+|++.+.++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhcccceEEeccccceeEEEecccc-------ceeeeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 9988877877777889999999999552 122455665 789999998776555447999999999999988
Q ss_pred eeeecCCCC----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce----EEEEeecccccCCCCcccceeeE
Q 004789 611 TSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE----LRCQINLTAYAQPGTISLELYPL 676 (730)
Q Consensus 611 ~~~~~~~~h----------~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~~~~~~gh~~~~v~~~ 676 (730)
+.+....++ ..+|++++..|...++++|+.+|.|++|-+..+- ++..+.. .+.|+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~GfVN-- 429 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------VGFVN-- 429 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------ccEEE--
Confidence 877654321 2388999999999999999999999999999882 2333321 44577
Q ss_pred EEEEecCCCCEEEE-EeCCCcEEEE
Q 004789 677 VIAAHPLEPNRIAL-GLTNGRVHVI 700 (730)
Q Consensus 677 ~v~~sp~~~~~las-~s~Dg~I~iW 700 (730)
+++|++ +++.+++ .+....+-=|
T Consensus 430 sl~f~~-sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 430 SLAFSN-SGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEcc-CCCEEEEeccccccccee
Confidence 899999 7775544 4444444333
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-25 Score=234.91 Aligned_cols=272 Identities=16% Similarity=0.211 Sum_probs=224.4
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEe
Q 004789 385 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 462 (730)
Q Consensus 385 ~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~ 462 (730)
+-+.|+..+ .||+| ....|++|+..++.. ....- .+...|+++.|+ |.+|++|
T Consensus 181 nlldWss~n-~laVa-lg~~vylW~~~s~~v---------------------~~l~~--~~~~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 181 NLLDWSSAN-VLAVA-LGQSVYLWSASSGSV---------------------TELCS--FGEELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred hHhhcccCC-eEEEE-ecceEEEEecCCCce---------------------EEeEe--cCCCceEEEEECCCCCEEEEe
Confidence 336788444 35554 445789988766653 11111 237899999999 9999999
Q ss_pred e-CCEEEEEEcCCceEEEEEcC-CCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEE-EcCCCCCeEEEEEeCCCC
Q 004789 463 S-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 463 s-dg~I~vwd~~t~~~~~~~~~-~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~spd~~ 539 (730)
. +|.|.|||..+.+.+..+.+ |...|.+++|... .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred ecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC
Confidence 9 99999999999999999998 9999999999833 899999999999999998865555 888999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-CcEEEEE---ecCcEEEEeCCCCceeeeec
Q 004789 540 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI---HEGQIDVYEAPTLNHTSQLV 615 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~s---~dg~I~iwd~~~~~~~~~~~ 615 (730)
++|+|+.|+.+.|||.... .+.. ....|. +.|.+++|+|- ...||+| .|+.|++||..++..+..+.
T Consensus 315 ~lASGgnDN~~~Iwd~~~~-----~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSP-----EPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred eeccCCCccceEeccCCCc-----cccE-EEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 9999999999999999652 3333 466777 79999999994 5566663 79999999999999988875
Q ss_pred CCCCCCCeEEEEEecCCCEEEEE--EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 616 PDKMDLPITYATYSCDGKCIYVS--CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 616 ~~~h~~~v~~~~~spdg~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
. ...|.++.|++..+-|+++ ..++.|.||+..+.+.+..+. || ...|. .++++| |+..+++|+.
T Consensus 386 t---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-------gH-~~RVl--~la~SP-dg~~i~t~a~ 451 (484)
T KOG0305|consen 386 T---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-------GH-TSRVL--YLALSP-DGETIVTGAA 451 (484)
T ss_pred c---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-------CC-cceeE--EEEECC-CCCEEEEecc
Confidence 4 7899999999988766654 446889999999988887776 77 44466 999999 8999999999
Q ss_pred CCcEEEEeCCCC
Q 004789 694 NGRVHVIEPLES 705 (730)
Q Consensus 694 Dg~I~iWd~~~~ 705 (730)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999999764
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=224.62 Aligned_cols=280 Identities=11% Similarity=0.145 Sum_probs=219.0
Q ss_pred CCCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 378 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+... + ..|.+.|..+++.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~----------f-------------~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT----------F-------------KAHEGLVRGICVTQ 119 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe----------e-------------ecccCceeeEEecc
Confidence 3699999999999987 6799999999999999987655111 1 1599999999999
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 456 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
+..+.+|.|.+|+.|.++. ....++.+ ...+..+.-+..+ .++|+|. .|.|||..-..+++.+.-....|.++.|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence 5555555599999999875 45555543 3445666666666 8888876 5999999988899999877888999999
Q ss_pred eCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc-ee
Q 004789 535 SLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-HT 611 (730)
Q Consensus 535 spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~-~~ 611 (730)
+|.. ..|++++.|+.|.+||++.+..... +..+ -.-+.|+|+|.+-.++++ .|..++.||++... ++
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~K-----Vi~~-----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKK-----VILT-----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccce-----eeee-----ccccceecCccccceeeccccccceehhhhhhcccc
Confidence 9965 5677777999999999999654332 2222 235589999966666664 89999999998754 44
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
..+. +|...|.++.|||.|+-+++||.|.+|+||.++.+.....+-... -..|. +|.|+- |.+++++|
T Consensus 266 ~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-------Mq~V~--~Vk~S~-Dskyi~SG 333 (433)
T KOG0268|consen 266 NVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-------MQHVF--CVKYSM-DSKYIISG 333 (433)
T ss_pred hhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-------hheee--EEEEec-cccEEEec
Confidence 4444 579999999999999999999999999999999887655443211 12244 999999 89999999
Q ss_pred eCCCcEEEEeCCCCc
Q 004789 692 LTNGRVHVIEPLESE 706 (730)
Q Consensus 692 s~Dg~I~iWd~~~~~ 706 (730)
|+|+.|++|.....+
T Consensus 334 Sdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASE 348 (433)
T ss_pred CCCcceeeeecchhh
Confidence 999999999986543
No 93
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=6.5e-24 Score=233.19 Aligned_cols=221 Identities=12% Similarity=0.073 Sum_probs=171.1
Q ss_pred CCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce--------EEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEE
Q 004789 444 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 509 (730)
Q Consensus 444 ~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~--------~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~ 509 (730)
+|...|.+++|+ +++|++|+ ||+|++||+.++. .+..+.+|...|.+++|+|++ .+++|+.|++|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 799999999999 57999999 9999999997642 345678899999999999999 567999999999
Q ss_pred EEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeE-----EEE
Q 004789 510 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-----HIQ 584 (730)
Q Consensus 510 iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~-----~l~ 584 (730)
+||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++. +. ...+|. +.+. ...
T Consensus 152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-----i~-tl~gH~---g~~~s~~v~~~~ 221 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-----AS-SFHIHD---GGKNTKNIWIDG 221 (568)
T ss_pred EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----EE-EEeccc---CCceeEEEEeee
Confidence 99999998877776 667899999999999999999999999999998543 22 244565 3332 234
Q ss_pred EecCCcEEEE-Eec----CcEEEEeCCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 585 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 585 ~spdg~~l~~-s~d----g~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
|++++.++++ |.+ +.|+|||+++ .+++..+..+.+.+.+......++|.++++|+.|+.|++|++..+... .+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~-~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIR-KV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEE-ee
Confidence 5688888888 545 3799999985 566666544333444444444567999999999999999999877532 22
Q ss_pred ecccccCCCCcccceeeEEEEEecC
Q 004789 659 NLTAYAQPGTISLELYPLVIAAHPL 683 (730)
Q Consensus 659 ~~~~~~~~gh~~~~v~~~~v~~sp~ 683 (730)
.. ..+..++. +++|.|.
T Consensus 301 ~~------~~s~~p~~--g~~f~Pk 317 (568)
T PTZ00420 301 NE------YKSCSPFR--SFGFLPK 317 (568)
T ss_pred cc------cccCCCcc--ceEEccc
Confidence 21 22345566 8899993
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1e-24 Score=217.29 Aligned_cols=270 Identities=13% Similarity=0.190 Sum_probs=220.1
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
..|....+.||+.|.++.++|... ++... ++ .||+-.|+.+.|+|+...+++++.|..|+||........
T Consensus 227 ~~~s~~~ilTGG~d~~av~~d~~s----~q~l~-~~--~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~--- 296 (506)
T KOG0289|consen 227 IIPSSSKILTGGEDKTAVLFDKPS----NQILA-TL--KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP--- 296 (506)
T ss_pred ecCCCCcceecCCCCceEEEecch----hhhhh-hc--cCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---
Confidence 344467889999999999999863 22222 22 469999999999999999999999999999987654430
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCC--CCCeEEEEEc
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFILL 494 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~--~~~v~~i~~s 494 (730)
.... .|..+|+.+..+ |+||++++ ||...+.|+++|..+...... .-.+++.+|+
T Consensus 297 ---------------~~~~-----~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH 356 (506)
T KOG0289|consen 297 ---------------TSSR-----PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH 356 (506)
T ss_pred ---------------cccc-----cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc
Confidence 1111 599999999999 99999999 999999999999988877643 3468999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
||| .|.+|..|+.|+|||+.++..+..|.+|+++|.+++|+.+|.+|++++.|+.|++||++.-+..+... ...
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-----l~~ 431 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-----LDE 431 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-----ccc
Confidence 999 99999999999999999999999999999999999999999999999999999999999844322222 222
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC--CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 574 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
. ..+.++.|.+.|++|+. |.+=+|++++-.+ ..++..+. .|.+..+.+.|....+++++++.|..++++.+
T Consensus 432 ~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 432 K---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred c---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 2 36899999999999998 4666677776443 34444443 46788999999999999999999999888764
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=213.73 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=231.5
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 458 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~ 458 (730)
.-.|.++...|....+++|+.|..+.++|..+++. +..+ .||...|..+.++ ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------l~~~--~Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------LATL--KGHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------hhhc--cCcceEEEEEEeccchhh
Confidence 45678888888877899999999999998877664 2211 2899999999999 667
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC--CCCCeEEEEE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY 534 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~V~~l~~ 534 (730)
+++++ |..|+||.............|..+|+.+..+|.| +|++++.|++..+.|++++..+..... ..-.+++.+|
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 88888 9999999998888888888999999999999999 999999999999999999988877653 2345899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~ 613 (730)
+|||..+.+|+.||.+++||+.++. .+. -+.+|. ++|..++|+.+|-+|++ +.|+.|++||++..+..++
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a-~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVA-KFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-----ccc-cCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999999999999999999843 233 456788 89999999999999999 5888899999999988888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
+.... ...+.+++|.+.|.+|+.++.|=.|++++-.+ +..+..+. -| .+... +|.|.. ...+++++
T Consensus 427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-------~~-sg~st--~v~Fg~-~aq~l~s~ 494 (506)
T KOG0289|consen 427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-------DH-SGLST--GVRFGE-HAQYLAST 494 (506)
T ss_pred eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-------hc-ccccc--eeeecc-cceEEeec
Confidence 87643 55899999999999999998888888887544 33444433 22 34455 888888 77899999
Q ss_pred eCCCcEEEEeC
Q 004789 692 LTNGRVHVIEP 702 (730)
Q Consensus 692 s~Dg~I~iWd~ 702 (730)
|.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999988764
No 96
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=9.2e-24 Score=231.99 Aligned_cols=224 Identities=14% Similarity=0.146 Sum_probs=176.3
Q ss_pred ee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEecCCCc--------eEEEEcCCCCCeE
Q 004789 462 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRIT 530 (730)
Q Consensus 462 ~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~ 530 (730)
|+ ++.|++|+..+...+..+.+|.+.|.+++|+|+ + .|++|+.|+.|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 44 689999999888888999999999999999997 5 99999999999999997642 3456788999999
Q ss_pred EEEEeCCCCE-EEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 004789 531 CLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 608 (730)
Q Consensus 531 ~l~~spd~~~-l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~ 608 (730)
+++|+|++.. +++++.|++|++||+++++.. ..+ . +. ..|.+++|+|+|.+|++ +.|+.|+|||++++
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-----~~i-~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-----FQI-N-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE-----EEE-e-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 9999999875 578999999999999986422 111 1 22 57999999999999998 47999999999999
Q ss_pred ceeeeecCCCCCCCeE-----EEEEecCCCEEEEEEcCC----eEEEEECCC-ceEEEEeecccccCCCCcccceeeEEE
Q 004789 609 NHTSQLVPDKMDLPIT-----YATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVI 678 (730)
Q Consensus 609 ~~~~~~~~~~h~~~v~-----~~~~spdg~~l~sgs~dg----~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v 678 (730)
+.+..+.. |.+.+. ...|++++.+|++++.|+ .|+|||+++ ++++..+.. +.....+..
T Consensus 200 ~~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l---------d~~~~~L~p 268 (568)
T PTZ00420 200 EIASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI---------DNASAPLIP 268 (568)
T ss_pred cEEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe---------cCCccceEE
Confidence 98888764 444432 234568999999888774 799999985 555555432 111222234
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 679 AAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 679 ~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.|.+.++.++++|+.|++|++|++..+.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 5556478899999999999999998764
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=219.03 Aligned_cols=275 Identities=16% Similarity=0.188 Sum_probs=218.3
Q ss_pred CCCCCC-CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 339 TSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 339 ~~spdg-~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
+..|.. ..+|+|+.||.|+|||+.. ..|.. ++. .|.+.|..+++.. ..++++|.|.+|+.|.++....
T Consensus 73 akhp~~ls~~aSGs~DG~VkiWnlsq----R~~~~-~f~--AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~-- 141 (433)
T KOG0268|consen 73 AKHPNKLSTVASGSCDGEVKIWNLSQ----RECIR-TFK--AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPL-- 141 (433)
T ss_pred hcCcchhhhhhccccCceEEEEehhh----hhhhh-eee--cccCceeeEEecc--cceEEecCCcceeeeeccCCcc--
Confidence 445655 7889999999999999973 22221 121 2999999999998 4589999999999998754311
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
+.+. -...+..+.-+ ++.+++| +..|.|||.....++..+.-....|.++.|+|
T Consensus 142 --------------------~til---g~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 142 --------------------HTIL---GKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred --------------------eeee---cccccccccccccccccccc-CceeeecccccCCccceeecCCCceeEEecCC
Confidence 1111 23445555555 4444444 45699999999999999998888999999999
Q ss_pred CC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 496 QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 496 dg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
.. .|++|+.|+.|.+||++++.+++.+. ..-.-+.|+|+|.+-.+++|+.|..++.||++.- ..++. ...+|
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----~~p~~-v~~dh 271 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----SRPLN-VHKDH 271 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhh----cccch-hhccc
Confidence 98 88899999999999999999888775 3456778999998888999999999999999873 25566 67788
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 574 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
. +.|.++.|||.|+-+++ +.|.+|+||..+.+.....+... .-+.|.++.||.|.+|+++||.|+.|++|.....
T Consensus 272 v---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 272 V---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred c---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 7 79999999999999999 59999999999887765555432 2677999999999999999999999999997765
Q ss_pred eEEEEe
Q 004789 653 ELRCQI 658 (730)
Q Consensus 653 ~~~~~~ 658 (730)
+.+..+
T Consensus 348 eklgv~ 353 (433)
T KOG0268|consen 348 EKLGVI 353 (433)
T ss_pred hhcCCC
Confidence 544433
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.5e-25 Score=209.04 Aligned_cols=287 Identities=14% Similarity=0.147 Sum_probs=236.5
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.||.+.||.++-......+.+++.|.+.+||.++++.+ +..+. ||.+.|+++.|+
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---------------------L~~Y~--GH~GSVNsikfh~s 201 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC---------------------LATYT--GHTGSVNSIKFHNS 201 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccc---------------------eeeec--ccccceeeEEeccc
Confidence 36999999999998888999999999999999888776 22222 899999999999
Q ss_pred CcEEEEee-CCEEEEEEc------CC----------------------------------ceEEEEEcCCCCCeEEEEEc
Q 004789 456 GSHLFSAS-GGKISIFSL------ET----------------------------------FQTLATFANPPPIATYFILL 494 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~------~t----------------------------------~~~~~~~~~~~~~v~~i~~s 494 (730)
+.++++++ |++-+||.. .. ..++..+.+|.+.|.+..|.
T Consensus 202 ~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 202 GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL 281 (481)
T ss_pred cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh
Confidence 88889999 999999961 10 01345677999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
..| .+++++.|.+..+||+++|..+..+.||....+.++-+|..+++++.+.|.+.++||++.. ...+. .+.||
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~-VFQGH 356 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVA-VFQGH 356 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceee-eeccc
Confidence 999 9999999999999999999999999999999999999999999999999999999999852 23344 67899
Q ss_pred CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 574 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
. ..|+++.|..+.+.+-.+.|.+|++||+++.+ ++.++.. ..++..++.+..+..++.--.+..|++||+...
T Consensus 357 t---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 357 T---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred c---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 8 79999999988765555789999999998764 5667764 788999999998889999988999999999865
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCC
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~--~~las~s~Dg~I~iWd~~~~ 705 (730)
.+ ..+... ...|| ...|. |++|.. +. .-|.+||.|..+.=|++..+
T Consensus 431 Rl-aRlPrt--sRqgH-rRMV~--c~AW~e-ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 431 RL-ARLPRT--SRQGH-RRMVT--CCAWLE-EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cc-ccCCcc--ccccc-ceeee--eeeccc-cCcccccccccccceeeeeEeccc
Confidence 43 333211 11266 44577 999975 22 35889999999999998765
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5e-24 Score=204.57 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=217.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCC-cceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCCcc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~-~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~~~ 415 (730)
..|+.||++|||++.|++||||++.+.... -.|.+..++ -+.-+.++|+||-+-++.... ..++++|.+.....
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 589999999999999999999999864322 133333332 235678999999886665554 46889998754432
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 492 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~ 492 (730)
....+...-||-. .+...|.-.|..+-.. +.+|++++ |..|.+|+++ |+.+..+......-+..+
T Consensus 168 ----G~~~~~~v~~D~~-------~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 168 ----GSGSHHFVHIDNL-------EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred ----CCCCccccccccc-------ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 1122222233310 1112466677776666 88999999 9999999999 999999988777788999
Q ss_pred EcCCC-eEEEEECCCcEEEEecC---CC-----ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
.||+| ++++++..-.|++|.+- .| ..+..++||...|..++|+++.+.+++.+.||++++||++-.-....
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999 99999999999999863 23 23456789999999999999999999999999999999875211111
Q ss_pred --eeecccc-cCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 564 --KFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 564 --~~i~~~~-~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
..+.+.. .-|.. .+.-..++++|+|+.|+++....+++|..++++....+.. .|...|.+++|+++|+++++++
T Consensus 316 Dpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~-~h~~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED-IHSTTISSISYSSDGKYIATCG- 392 (420)
T ss_pred CchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH-hhcCceeeEEecCCCcEEeeec-
Confidence 1111000 00110 1334489999999999999888999999999887776654 5799999999999999999986
Q ss_pred CCeEEEEECC
Q 004789 641 SGHVKVFDTS 650 (730)
Q Consensus 641 dg~I~iwd~~ 650 (730)
|..++++.-.
T Consensus 393 dr~vrv~~nt 402 (420)
T KOG2096|consen 393 DRYVRVIRNT 402 (420)
T ss_pred ceeeeeecCC
Confidence 7888887633
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=229.55 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=225.4
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcE
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 458 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 458 (730)
.|+..-+.++|.|+|++|++++.||.|++|+...... ....+- .+...|.+++..+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccCceeEEEeecccc
Confidence 4899999999999999999999999999998765522 011110 266788888888778
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 536 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 536 (730)
|++|+ +++|.+|.+..++.-..+....-++.+++++.+| +++.|+.|-.|++.++.+......+.+|.++|.++.|+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 88888 9999999999888776666677889999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCC-CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 004789 537 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 537 d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~-~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~ 614 (730)
.+++||+.+.||.|++||+.++..... +..+....... ...+..++|+|+|..+++ +.|+.|.+|+..+......+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~t--l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKT--LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhh--cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 999999999999999999998643221 11111111100 145678999999666665 89999999999999998888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 694 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D 694 (730)
....+...+..++|+|+|+|||+++.||.|.|||+++-+. ... ...|. +.+|.| +.+.+-.-...
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-----------~~~Vc--~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-----------KRAVC--CEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-----------cceeE--EEecCC-CCCeeEEEeec
Confidence 8776666799999999999999999999999999998332 111 23355 899999 66655544444
Q ss_pred CcEEEE
Q 004789 695 GRVHVI 700 (730)
Q Consensus 695 g~I~iW 700 (730)
|..-+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 444443
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=215.63 Aligned_cols=269 Identities=14% Similarity=0.139 Sum_probs=215.9
Q ss_pred CCCCCCCe-eEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 339 TSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 339 ~~spdg~~-lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.++|...+ +|+++ .-.+.||+.......+.+.+ ..+.|.++.|-.||+.||+|...|.|+|+|..+...
T Consensus 33 ~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-- 102 (487)
T KOG0310|consen 33 CFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI-- 102 (487)
T ss_pred ecCCCCCCceEEec-ccEEEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCCcCcEEEeccccHHH--
Confidence 56664432 33332 36788888763222222222 678999999999999999999999999999544211
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
+..+ ..|+.+|..+.|+ +..+++|+ |+.+++||+.+......+.+|++.|.|.+|
T Consensus 103 -------------------LR~~--~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 103 -------------------LRQL--YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred -------------------HHHH--hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 1111 1699999999999 66788888 789999999999887789999999999999
Q ss_pred cCCC--eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 494 LPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 494 spdg--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
+|.. .+++|+.||.|++||.++. ..+.++. |..+|.++.+-|.|..+++++ ...+++||+.+|.+ .+. ..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q----ll~-~~ 234 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ----LLT-SM 234 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce----ehh-hh
Confidence 9987 8999999999999999987 6666665 999999999999999999887 46899999997532 222 23
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
..|. ..|+|+++..+++.|++ |-|+.+++||+.+.+.+..+.- .++|.+++.+|+++.++.|..||.+.+=+.
T Consensus 235 ~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence 3355 58999999999999999 6999999999988999888854 899999999999999999999999877754
Q ss_pred CC
Q 004789 650 ST 651 (730)
Q Consensus 650 ~~ 651 (730)
..
T Consensus 309 ~~ 310 (487)
T KOG0310|consen 309 EV 310 (487)
T ss_pred hc
Confidence 43
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.3e-24 Score=202.51 Aligned_cols=269 Identities=12% Similarity=0.098 Sum_probs=206.6
Q ss_pred CCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 380 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 380 h~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
-.+.|.+++||| ...+++++|-||+||+|+++..... .++... .|.++|.+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~----------------~~ka~~-----~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL----------------VPKAQQ-----SHDGPVLDVCWSDDG 84 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc----------------cchhhh-----ccCCCeEEEEEccCC
Confidence 578899999999 4556668888999999999764220 011111 599999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC---eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
..+++|+ |+.+++||+.++ .+..+..|.++|.++.|-+.. .|+||+.|++|+.||.+...++.++. -.+++.++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 8888888 999999999999 556677899999999998766 89999999999999999999988887 45677776
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--c
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--N 609 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~--~ 609 (730)
..- ...++++..++.|.+|+++++.... +.+. ..-. -.+++++..+|....+. +-+|.+.|..+..+ +
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~-k~~~---SpLk---~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEF-KRIE---SPLK---WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchh-hhhc---Cccc---ceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 553 3478888999999999998743211 1111 1111 46889999998777777 58999999888775 3
Q ss_pred eeeeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 610 HTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 610 ~~~~~~~~~h-------~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
.-.+|+.+.. -..|.+++|+|.-..|++++.||++.+||-+....++.... | ..+|. +.+|+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-------~-~qpIt--cc~fn~ 303 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-------H-PQPIT--CCSFNR 303 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-------C-CCccc--eeEecC
Confidence 3334443321 23578899999989999999999999999887766666542 2 66788 999999
Q ss_pred CCCCEEEEE
Q 004789 683 LEPNRIALG 691 (730)
Q Consensus 683 ~~~~~las~ 691 (730)
+|.++|-+
T Consensus 304 -~G~ifaYA 311 (347)
T KOG0647|consen 304 -NGSIFAYA 311 (347)
T ss_pred -CCCEEEEE
Confidence 88888754
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.5e-24 Score=203.02 Aligned_cols=291 Identities=14% Similarity=0.104 Sum_probs=211.7
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
||.+.|++++||.||++||+++.|++|+||+++.-.. ....+++... .-+.-+.++|.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nv---e~dhpT~V~FapDc 144 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNV---EYDHPTRVVFAPDC 144 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccc---cCCCceEEEECCCc
Confidence 5999999999999999999999999999999876332 0111222111 11234567787
Q ss_pred CcEEEEee-CCEEEEEEcCC---ceEEEE---------EcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE
Q 004789 456 GSHLFSAS-GGKISIFSLET---FQTLAT---------FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 521 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t---~~~~~~---------~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~ 521 (730)
...++++- ..++++|.+.. |..... -+.|.-.+..+-....+ +|++++.|..|.+|+++ |+.+..
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 44555555 67899997643 211111 11345566667777777 99999999999999999 999988
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---CceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 597 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~---~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d 597 (730)
+......-+..+.+|+|+++++++-.-.|++|.+-- |+......+. .+.||. ..|..++|+++.+.+++ +.|
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEEEecC
Confidence 877666777889999999999999988999998742 2222222222 367888 79999999999999998 799
Q ss_pred CcEEEEeCCC-------CceeeeecC--CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCC
Q 004789 598 GQIDVYEAPT-------LNHTSQLVP--DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 668 (730)
Q Consensus 598 g~I~iwd~~~-------~~~~~~~~~--~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh 668 (730)
|++++||..- .+.+++... +...+....+..+|+|+.|+.+. ...+++|..++|+....++ ..
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e-------~~ 371 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE-------DI 371 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH-------Hh
Confidence 9999999752 122222211 11244455899999999888764 5779999999988776665 22
Q ss_pred cccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 669 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 669 ~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
|...|. +++|++ +|++++|+| |..+++..-..|
T Consensus 372 h~~~Is--~is~~~-~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 372 HSTTIS--SISYSS-DGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred hcCcee--eEEecC-CCcEEeeec-ceeeeeecCCCc
Confidence 366677 999999 899999997 678888875444
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.8e-25 Score=229.13 Aligned_cols=285 Identities=17% Similarity=0.194 Sum_probs=224.9
Q ss_pred CCCcEE---EEEEe-cCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe
Q 004789 380 FGGRVV---RLIYS-HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 455 (730)
Q Consensus 380 h~~~V~---~v~fs-pdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s 455 (730)
|...|. .+..+ |.++||++||.||.|++|++........ +. .+.. .+.|..+|+.++..
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--------------~~-~~as--me~HsDWVNDiiL~ 82 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--------------TP-YIAS--MEHHSDWVNDIILC 82 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc--------------cc-hhhh--hhhhHhHHhhHHhh
Confidence 444444 45555 4677899999999999999865543100 00 1111 11599999999988
Q ss_pred --CcEEEEee-CCEEEEEEcCCc--eEEEEEcCCCCCeEEEEE-cCCC-eEEEEECCCcEEEEecCCCc--eE-------
Q 004789 456 --GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFIL-LPQD-LFAFGFDDSSILVHCPCTKK--TK------- 519 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~--~~~~~~~~~~~~v~~i~~-spdg-~l~sgs~dg~I~iwd~~~~~--~~------- 519 (730)
++.|++++ |-+|++|+...+ -+..++..|...|.|+++ -++. .+|+||-|+.|.+||+.++. .+
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 88999999 999999999877 577888999999999999 6777 99999999999999999872 22
Q ss_pred -EEEc-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee
Q 004789 520 -AKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 596 (730)
Q Consensus 520 -~~~~-~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~ 596 (730)
..+. |+...|.+++-++.|..+++|+..+.+++||.++++ +.+. ..||. ..|..+..++||+.+++ ++
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimk--LrGHT---dNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMK--LRGHT---DNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc----ceee--eeccc---cceEEEEEcCCCCeEeecCC
Confidence 2233 788899999999999999999999999999999954 2333 45898 79999999999999999 69
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce-EEEEeecccccCCCCcccceee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
||+|++||+...+++.++.. |...|+++..+|+-..+++|+.||.|+.=|+.+.. ....+.. +.+|.
T Consensus 234 DgtIrlWdLgqQrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---------daPv~- 301 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---------DAPVL- 301 (735)
T ss_pred CceEEeeeccccceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---------CCchh-
Confidence 99999999999999999875 57779999999999999999999999999998843 2222221 34455
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.+..+. +.+-+-+++.|+.|+-|...-
T Consensus 302 -~l~~~~-~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 302 -KLHLHE-HDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred -hhhhcc-ccCCceeeeccccceecCCcc
Confidence 555554 234446677899999998754
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-23 Score=200.14 Aligned_cols=300 Identities=16% Similarity=0.170 Sum_probs=222.4
Q ss_pred CCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 380 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 380 h~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
|.+.|+++...+ .|+|+++|+.||.|.+||++....... + . .+-+ ....+...-..+|.-.|..+.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s-~---li~k--~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--S-G---LIAK--HKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--c-c---ceeh--eeeeccccCCccceeeeeeeEEeeec
Confidence 999999999998 789999999999999999986542111 0 0 0000 00011111122688899999998
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC----eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 530 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg----~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 530 (730)
...+.+++ |.+++|||..|-+....|+ -++.|.+-+++|=. ++|+|..|-.|++.|+.+|..-+++.||.+.|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 55677777 9999999999998888776 45668888888754 788889999999999999999999999999999
Q ss_pred EEEEeCCCCE-EEEEeCCCcEEEEEcCCCce---------ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCc
Q 004789 531 CLAYSLSLNV-LVSSGADAQLCVWDAVGWKK---------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 599 (730)
Q Consensus 531 ~l~~spd~~~-l~s~s~dg~I~vwd~~~~~~---------~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~ 599 (730)
++.|+|...+ |++|+.||.|++||++.... ....++......|. +.|..++|+.++.++++ +.|..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccCccc
Confidence 9999997765 67899999999999986310 00111111334555 78999999999999999 69999
Q ss_pred EEEEeCCCCceeeeecCC-CCC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 600 IDVYEAPTLNHTSQLVPD-KMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~-~h~---~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
+++|+..+|+....-.+. .|. ..-..+. +.+...++---.++.+.++++..|..+..+. +| -..|.
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h-~k~i~- 339 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------TH-LKRIN- 339 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------cc-cceee-
Confidence 999999887642211111 111 1111122 3344444444456999999999999999887 55 55566
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+.+|-| +-+...+|+.|+.|..|-+.
T Consensus 340 -c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 340 -CAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred -EEeecC-chhhhhccccCCcccccccc
Confidence 888888 77889999999999999983
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.2e-24 Score=204.64 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=221.0
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCC----Cccccc--
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS----NKQSLE-- 418 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~----~~~~~~-- 418 (730)
..+.+++.|.+.+||.+. .+.|.... .||.+.|++++|++.+..+++++.|++-.||...- .+....
T Consensus 161 pi~gtASADhTA~iWs~E----sg~CL~~Y---~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLE----SGACLATY---TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred cceeecccccceeEEeec----cccceeee---cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence 477889999999999996 55664422 47999999999999999999999999999998321 110000
Q ss_pred -------cccccceeeEec---CCCCee--EeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcC
Q 004789 419 -------EENVNMESQLYQ---PSSKLV--MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 483 (730)
Q Consensus 419 -------~~~~~~~~~i~~---~~~~~~--~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~ 483 (730)
..+ +...+-.| ..++.. +......+|...|.+..|- |+.+++++ |.+-.+||+++|+.+..+.+
T Consensus 234 hSsEeE~e~s-De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG 312 (481)
T KOG0300|consen 234 HSSEEEEEHS-DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG 312 (481)
T ss_pred CCchhhhhcc-cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC
Confidence 000 00000011 011111 1112233799999999998 89999999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee
Q 004789 484 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 561 (730)
Q Consensus 484 ~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~ 561 (730)
|....+.++-+|.. ++++.+.|.+.++||++.. ..+..|+||...|+++.|.-+. .+++|+.|.+|++||+++..
T Consensus 313 Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR-- 389 (481)
T KOG0300|consen 313 HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR-- 389 (481)
T ss_pred cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecccc--
Confidence 99999999999999 9999999999999999854 5677899999999999999765 68899999999999999832
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEecCC--CEE
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDG--KCI 635 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~spdg--~~l 635 (730)
.++.++... .+++.++.+..+..++.- .+..|++||+. |..+..+. ..+|...|.|++|..+- .-|
T Consensus 390 --splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnL 461 (481)
T KOG0300|consen 390 --SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNL 461 (481)
T ss_pred --CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCccccc
Confidence 344433332 578999999988888886 56679999995 44443332 23578899999998433 357
Q ss_pred EEEEcCCeEEEEECCCc
Q 004789 636 YVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 636 ~sgs~dg~I~iwd~~~~ 652 (730)
++++-|..+.=|.+...
T Consensus 462 ftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeEeccc
Confidence 78888999999998754
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.6e-23 Score=198.75 Aligned_cols=268 Identities=13% Similarity=0.124 Sum_probs=209.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
-.+.|.+|.|+|.+..|++++-||++++|++........ + .|..++.+++|. ...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------~--~~~~plL~c~F~d~~~ 67 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------F--KHGAPLLDCAFADEST 67 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh----------------------e--ecCCceeeeeccCCce
Confidence 368899999999999999999999999999876643111 1 489999999999 888
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 536 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 536 (730)
+++|+ ||.|+.+|+.++.... +..|..+|.|+..++-. .+++|++|++|++||.+.......+. ....|.++...
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~- 144 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS- 144 (323)
T ss_pred EEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-
Confidence 99999 9999999999876644 44699999999999877 99999999999999999755555554 34478887765
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC----cee
Q 004789 537 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHT 611 (730)
Q Consensus 537 d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~----~~~ 611 (730)
|+.|++|+.|..+.+||+++.. .+.+.....-. ..+.++++-|++.-.++ +-||+|.+=.+... +..
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~----~~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLD----EPFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred -CCEEEEeecCceEEEEEccccc----chhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 6789999999999999999843 22221112222 57899999997766666 68999887665544 222
Q ss_pred eeecCCC-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC
Q 004789 612 SQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 684 (730)
Q Consensus 612 ~~~~~~~-------h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~ 684 (730)
..|+.|. ...+|.+++|+|--..+++|+.||.|.+||+.+.+.++.+. +. ...|. .++|+. +
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-------~~-~~SI~--slsfs~-d 285 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-------KY-ETSIS--SLSFSM-D 285 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-------CC-CCceE--EEEecc-C
Confidence 2333321 13478999999999999999999999999999998887775 22 33466 899999 8
Q ss_pred CCEEEEEeC
Q 004789 685 PNRIALGLT 693 (730)
Q Consensus 685 ~~~las~s~ 693 (730)
|..||+++.
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999874
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=210.66 Aligned_cols=274 Identities=16% Similarity=0.210 Sum_probs=212.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCc-----------ceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEE
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPS-----------ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 406 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~-----------~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~ 406 (730)
...+||+++..+++.+++|.=|++....... +...+.....+|...|.+++.|+||+|||+|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 5789999999999999999999986433210 11111111126999999999999999999999999999
Q ss_pred EeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcC
Q 004789 407 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 483 (730)
Q Consensus 407 iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~ 483 (730)
||+.++.+.. +.+ .+|.+.|.+++|- ...+++++ |.+|++|+++....+.++-+
T Consensus 228 Iw~~~t~ehv---------------------~~~--~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 228 IWDCDTLEHV---------------------KVF--KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EecCcccchh---------------------hcc--cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence 9998877641 111 1799999999999 55688888 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec
Q 004789 484 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 484 ~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~ 562 (730)
|...|..+....-+ .+.+|+.|+++++|++.. ...-.+.+|.+.+-|++|-.+ ..+++|+.+|.|.+|++...+...
T Consensus 285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred CccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCcee
Confidence 99999999988777 777777999999999953 444567789999999999754 579999999999999998854433
Q ss_pred ceeecc-cccCCCCC--CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC----ceeeeecCCCCCCCeEEEEEecCCCE
Q 004789 563 SKFLHS-FQTGLVPE--TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSCDGKC 634 (730)
Q Consensus 563 ~~~i~~-~~~~h~~~--~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~----~~~~~~~~~~h~~~v~~~~~spdg~~ 634 (730)
...+.. +...+.+. ..+|++++..|....+++| .+|.|++|-+..+ .++..+. -.+.|++++|+++|++
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKR 439 (479)
T ss_pred EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCE
Confidence 222110 00110000 0289999999999999995 8999999998876 3344443 3789999999999997
Q ss_pred EEEEE
Q 004789 635 IYVSC 639 (730)
Q Consensus 635 l~sgs 639 (730)
+++|.
T Consensus 440 ivagi 444 (479)
T KOG0299|consen 440 IVAGI 444 (479)
T ss_pred EEEec
Confidence 77764
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-22 Score=214.12 Aligned_cols=329 Identities=12% Similarity=0.104 Sum_probs=252.1
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
+.++.|+.+|.++||++.. .+.+.++. ++.+.|+++.-+|-=..+|.|..+|+|.+++++.++....
T Consensus 173 NKIvvGs~~G~lql~Nvrt---~K~v~~f~----~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s------ 239 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRT---GKVVYTFQ----EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS------ 239 (910)
T ss_pred eeEEEeecCCcEEEEEecc---CcEEEEec----ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE------
Confidence 4578899999999999974 22333332 3789999999999999999999999999999877764111
Q ss_pred eeeEecCCCCeeEeecccCCC-CCCeeEEEEe--CcE-EEEee-CCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC-
Q 004789 425 ESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD- 497 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~h-~~~V~~l~~s--~~~-l~s~s-dg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg- 497 (730)
+ .| .+.|++++|. |+. +++|+ .|.+.+||++..+....+. .|.+.|....|.|..
T Consensus 240 ---------------F---k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 240 ---------------F---KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred ---------------E---EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 1 25 4899999999 655 66666 7999999999888877666 788999999999988
Q ss_pred eEEEEECCCcEEEEecCCC----ceEEEEcCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCce------------
Q 004789 498 LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKK------------ 560 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s-pd~~~l~s~s~dg~I~vwd~~~~~~------------ 560 (730)
.+++++.|+.+++|=.+++ +.++.-.||..+..++.|. .+|..+.+++.|++++.+++.....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 9999999998888855543 4556667899999999997 6788899999999877776532100
Q ss_pred ---ecce--------eec------------------------------------c-cccCC--CCCCCCeEEEEEecCCc
Q 004789 561 ---LCSK--------FLH------------------------------------S-FQTGL--VPETTIVNHIQFHPDQI 590 (730)
Q Consensus 561 ---~~~~--------~i~------------------------------------~-~~~~h--~~~~~~v~~l~~spdg~ 590 (730)
.... ++- . +.... .+....+++++.++.|+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0000 000 0 00000 00115688999999999
Q ss_pred EEEEE-ecCcEEEEeCCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccc-----
Q 004789 591 HLLSI-HEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY----- 663 (730)
Q Consensus 591 ~l~~s-~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~----- 663 (730)
+.+.| +.|.|-+|++.+|-....+- ...|..+|++++...-++.+++++.+|.+.+||..+..++..+....-
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 99986 88999999999998887773 235799999999988889999999999999999988775444431100
Q ss_pred -----------------------------cCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 664 -----------------------------AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 664 -----------------------------~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
...|| ++.|+ +++||| ||++|++++.|++|++||+.++...
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nrit--d~~FS~-DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRIT--DMTFSP-DGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-cccee--eeEeCC-CCcEEEEeecCCcEEEEeccCccee
Confidence 02366 55688 999999 9999999999999999999999653
No 110
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-22 Score=194.73 Aligned_cols=266 Identities=15% Similarity=0.190 Sum_probs=203.7
Q ss_pred eEeecCCCcEEEEeecCCC-CCcceeee----ecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccc
Q 004789 347 AVCAKSLEKSVNLKLQLIN-EPSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 421 (730)
Q Consensus 347 lat~~~dg~i~lWd~~~~~-~~~~~~~~----~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~ 421 (730)
+++|+....|.-+++.... ....-.+. .+..+.|.++|++++.+ |.|+|+||.|.+|+|||++....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q------ 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ------ 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh------
Confidence 5667777777777765322 00011111 11124599999999986 88999999999999999987654
Q ss_pred ccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC
Q 004789 422 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 496 (730)
Q Consensus 422 ~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd 496 (730)
-|.++ .|.+.|+++.|. .+.|++|+ ||.|.+|+.....++.++++|.+.|+.++++|.
T Consensus 76 -----------lg~ll------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 76 -----------LGILL------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred -----------hccee------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence 12222 499999999999 23789999 999999999999999999999999999999999
Q ss_pred C-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCC
Q 004789 497 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 575 (730)
Q Consensus 497 g-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~ 575 (730)
| +.++.+.|+.+++||+-.|+.-..+.- ....+.+.|+|.|.+++.++.+ .|-+|.+.+... +..+...
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v-----~~~i~~~--- 208 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV-----FREIENP--- 208 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH-----hhhhhcc---
Confidence 9 888889999999999999876655542 2334559999999988887754 688999887321 1111111
Q ss_pred CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE--ecCCCEEEEEEcCCeEEEEECCCc
Q 004789 576 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 576 ~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~--spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
..+.++.|.. +..|++ +.|+.|.+||-.+..+...+. .|...|-++.+ .|++.+|++++.||.|+|||++..
T Consensus 209 --~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 209 --KRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --ccceeeeecC-CceEEEecCCceEEEeccCCCccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 2466777764 455666 588999999998888887776 47899999885 377899999999999999999876
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.7e-23 Score=210.90 Aligned_cols=250 Identities=15% Similarity=0.246 Sum_probs=196.4
Q ss_pred CCCcEEEEEEecCCC-EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 380 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
|.+.|+.+.+.|... .+|+.+..+.|.|||.....-... ..+.+...+.+.+|...-++++|+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-------------~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-------------ASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-------------ccccCCCceEEEeeccccccccccccc
Confidence 999999999999776 455566789999999876543111 111111111222688877889999
Q ss_pred CcEEEEee-CCEEEEEEcCCce-------EEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecC--CCceEEEEc
Q 004789 456 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKLK 523 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~-------~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~--~~~~~~~~~ 523 (730)
...|++++ |++|++||+.... ....+.+|...|..++|++-. .|++++.|+.+.|||.+ +.++.....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 55677777 9999999997533 345678999999999999988 99999999999999999 556777788
Q ss_pred CCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE-E-EecCcE
Q 004789 524 GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-IHEGQI 600 (730)
Q Consensus 524 ~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~-~-s~dg~I 600 (730)
+|.+.|+|++|+| ++..||+||.|++|.+||+++-. .++. .+.+|. ..|.++.|+|+...++ + |.|+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCcE
Confidence 8999999999999 55778999999999999999843 3556 678888 7999999999765555 4 599999
Q ss_pred EEEeCCCCceee------------eecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECC
Q 004789 601 DVYEAPTLNHTS------------QLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 601 ~iwd~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~~ 650 (730)
.+||+..-...+ .|.-++|...|..+.|+|+.. .|++.++|+.+.||.+.
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999986422221 244457899999999999875 56688899999999976
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=7.9e-24 Score=213.98 Aligned_cols=273 Identities=12% Similarity=0.095 Sum_probs=218.9
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
..|...+.+.||+. |.|+|||+..........++.. ..-.+-|.++.++|||+.|++|+.-.++.|||+........
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc--l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik 502 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC--LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK 502 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccc--cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchh
Confidence 56777788888877 9999999986433222222221 11467899999999999999999999999999976654111
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
. .+ ....-.+++++.+ .+..+++. ||.|.|||+.+...++.|++|...+.||.+++
T Consensus 503 -------------------a-el-tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 503 -------------------A-EL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred -------------------h-hc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 0 00 0123456667777 55555555 99999999999999999999999999999999
Q ss_pred CC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
|| .|.+|+-|++|+.||++++..+.... ..+.|.++.++|++.+|++|-..+.+.|......++ .+ ..-|+
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yq--lhlhe 633 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQ--LHLHE 633 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-----ee--ecccc
Confidence 99 99999999999999999997766554 568899999999999999999999998888776321 12 33455
Q ss_pred CCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 575 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 575 ~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
..|.++.|.+-|+++++ |.|+-+..|...-|..+..... ...|.++.+|.|.++|++|+.|....||.+
T Consensus 634 ---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 ---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 68999999999999998 7999999999887877666543 889999999999999999999988888875
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.2e-23 Score=195.03 Aligned_cols=263 Identities=14% Similarity=0.120 Sum_probs=200.1
Q ss_pred cCCCC-CCCeeEeecCCCcEEEEeecCC-CCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLP-DADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~sp-dg~~lat~~~dg~i~lWd~~~~-~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
.+||| ....++.++.||+||+|++... ....+.+ ..|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~------~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ------QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhh------hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 57899 5666669999999999999852 1111111 23899999999999999999999999999999988865
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C--cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 490 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~--~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~ 490 (730)
. +. ..|..+|.++.|- . ..|++|+ |.+|+.||++...++.++.- ...+.+
T Consensus 107 ~---------------------~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa 161 (347)
T KOG0647|consen 107 S---------------------QV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA 161 (347)
T ss_pred e---------------------ee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee
Confidence 1 11 1499999999999 3 3689999 99999999999888888763 445666
Q ss_pred EEEcCCCeEEEEECCCcEEEEecCCCceEE-EEc-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecc
Q 004789 491 FILLPQDLFAFGFDDSSILVHCPCTKKTKA-KLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 491 i~~spdg~l~sgs~dg~I~iwd~~~~~~~~-~~~-~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~ 568 (730)
+..-.. .++++..+..|.+|+++.+.... ... .-.-.++||+..+|....+.|+-.|.+.+..+..+.......++
T Consensus 162 ~Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk- 239 (347)
T KOG0647|consen 162 ADVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK- 239 (347)
T ss_pred hhccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE-
Confidence 655333 78888899999999998764322 111 13456889999998888899999999999999875332222222
Q ss_pred cccCCC-----C-CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 004789 569 FQTGLV-----P-ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 569 ~~~~h~-----~-~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sg 638 (730)
.|. . ....|.+|+|+|.-..|++ |+||++.+||-.....+.... .|..+|++++|+.+|.+++-+
T Consensus 240 ---CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~--~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 240 ---CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE--THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC--cCCCccceeEecCCCCEEEEE
Confidence 221 0 0146788999998777777 899999999987776666654 469999999999999987744
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.5e-23 Score=211.99 Aligned_cols=279 Identities=15% Similarity=0.186 Sum_probs=224.0
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|..-|.++++|...+++++|+. |.|+|||+.......- +.-.| ++ ...+.|+++... |+
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-------vsqLd-----cl------~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-------VSQLD-----CL------NRDNYIRSCKLLPDGR 478 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-------ccccc-----cc------CcccceeeeEecCCCc
Confidence 8899999999999999888765 6899999876532000 00001 11 255677777777 99
Q ss_pred EEEEee-CCEEEEEEcCCceEE--EEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 458 HLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~--~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
.|++|+ ..++.|||+...... ..+........+++.+||. ..+++..||.|.|||+.....++.|+||.+.+.||.
T Consensus 479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 999999 799999999765443 3343444567789999999 888999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~ 612 (730)
+++||..|.+|+-|.+|+.||++.+.+.....+. ..|.++..+|++.++++| .++.+.+.... +....
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~ky 627 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKY 627 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecC-Cccce
Confidence 9999999999999999999999996543333222 689999999999999998 77888888774 33333
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+ +.|...|.++.|.+.|+++++.+.|+.+..|....|..+.... +...|. ++..+. |.++++||+
T Consensus 628 ql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVTGS 693 (705)
T KOG0639|consen 628 QL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVTGS 693 (705)
T ss_pred ee--cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEecC
Confidence 33 4579999999999999999999999999999999988766543 244566 777777 789999999
Q ss_pred CCCcEEEEeC
Q 004789 693 TNGRVHVIEP 702 (730)
Q Consensus 693 ~Dg~I~iWd~ 702 (730)
.|..-.||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888875
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=7.9e-23 Score=214.80 Aligned_cols=343 Identities=18% Similarity=0.223 Sum_probs=251.1
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCc---------------------cee-eeecCC--CCCCCcEEEEEEecCCCEEEE
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPS---------------------ECR-TLLLPD--NSFGGRVVRLIYSHSGDFLVA 398 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~---------------------~~~-~~~l~~--~gh~~~V~~v~fspdg~~L~s 398 (730)
+.-+||++|.|..||||.+....... +++ ++.+.. .||.+.|.++.|+|++..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 55689999999999999986433111 010 111111 489999999999999988999
Q ss_pred EeCCCcEEEeecCCCccccc---------ccccccee-------------------eEecCC-CCeeEeecccCCCCCCe
Q 004789 399 LTQTATHKLWKWQSNKQSLE---------EENVNMES-------------------QLYQPS-SKLVMTNDIAADPKDSI 449 (730)
Q Consensus 399 ~s~dg~I~iWd~~~~~~~~~---------~~~~~~~~-------------------~i~~~~-~~~~~~~~~~~~h~~~V 449 (730)
+|.|.++.+|.-....-+-. +..+.|.. ++|..+ .....+.....||...|
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 99999999998766522110 11222332 445422 22233444556899999
Q ss_pred eEEEEe--CcEEEEee-CCEEEEEEcC----CceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC------
Q 004789 450 SCFALR--GSHLFSAS-GGKISIFSLE----TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------ 515 (730)
Q Consensus 450 ~~l~~s--~~~l~s~s-dg~I~vwd~~----t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~------ 515 (730)
.+++|+ |++|++.+ |.+-+++-.- +...+..-+-|...++|+++-+.. .+++|.....+++|+...
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 999999 99999999 9999987654 123334445688899999999866 999999999999998631
Q ss_pred -------------------------------------Cc---------------------------------eEEEEcCC
Q 004789 516 -------------------------------------KK---------------------------------TKAKLKGH 525 (730)
Q Consensus 516 -------------------------------------~~---------------------------------~~~~~~~h 525 (730)
|. .++++.||
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 00 01234578
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCc
Q 004789 526 QNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 599 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~ 599 (730)
...|.+++.+|+++.+|+++... .|++|+..++.. .+ ...+|. -.|+.++|||||++|++ +.|.+
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~-~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQ-ELEGHS---LTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hh-eecccc---eEEEEEEECCCCcEEEEeecCce
Confidence 88999999999999999987643 599999998543 22 356777 68999999999999998 89999
Q ss_pred EEEEeCCCCceeeeec---CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEeecccccCCCCccccee
Q 004789 600 IDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELY 674 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~ 674 (730)
+.+|........ .+. ...|..-|+.+.|+|++.+++++|.|.+|.+|..... +.+..+... .+ +..|+
T Consensus 596 ~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-----~~-~~aVT 668 (764)
T KOG1063|consen 596 VSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-----KF-SLAVT 668 (764)
T ss_pred EEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-----cc-CCcee
Confidence 999997543221 111 3467899999999999999999999999999998877 433332211 11 45677
Q ss_pred eEEEEEecCCCC----EEEEEeCCCcEEEEeCC
Q 004789 675 PLVIAAHPLEPN----RIALGLTNGRVHVIEPL 703 (730)
Q Consensus 675 ~~~v~~sp~~~~----~las~s~Dg~I~iWd~~ 703 (730)
+++|.|.+.+ .++.|-..|.|.+|...
T Consensus 669 --Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 669 --AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred --eEEeeccccccccceEEEEecccEEEEEecc
Confidence 8888875544 78889999999999965
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.2e-21 Score=202.83 Aligned_cols=277 Identities=15% Similarity=0.125 Sum_probs=198.2
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEE-EEEeCCCcEEEeecCCCccccccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L-~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
+..+++++.|+.+++||.... .....+. +...+.+++|+|+|+.+ ++++.++.|++||..+++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---~~~~~~~-----~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---EVTRTFP-----VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---ceEEEEE-----CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------
Confidence 356789999999999998632 2223332 23447789999999977 4566789999999876543
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEe-e-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 497 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~-s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg- 497 (730)
..... .+ ..+..++|+ ++.++++ . ++.|++||+.+++.+..+..+ ..+.+++|+|+|
T Consensus 66 --------------~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~ 127 (300)
T TIGR03866 66 --------------IGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGK 127 (300)
T ss_pred --------------EEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCC
Confidence 11111 12 234567888 6666544 4 799999999998888777532 346789999999
Q ss_pred eEEEEECCC-cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCceecceeecccccCCCC
Q 004789 498 LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 575 (730)
Q Consensus 498 ~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~ 575 (730)
.+++++.++ .+.+||..+++....+. ....+.+++|+|++++++++ ..++.|++||+.+++........ ....+..
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~ 205 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHPE 205 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-ccccccc
Confidence 888887765 57788998887766553 23456789999999988654 46899999999986543222111 0010100
Q ss_pred CCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCc
Q 004789 576 ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTL 652 (730)
Q Consensus 576 ~~~~v~~l~~spdg~~l~~--s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~ 652 (730)
......++|+|+++++++ +.++.+.+||+.+++.+..+.. ...+.+++|+|+|++|++++ .+|.|.+||+.++
T Consensus 206 -~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 206 -AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred -cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 012456899999998665 3567899999998887765532 45788999999999998864 5899999999999
Q ss_pred eEEEEee
Q 004789 653 ELRCQIN 659 (730)
Q Consensus 653 ~~~~~~~ 659 (730)
+.+..+.
T Consensus 282 ~~~~~~~ 288 (300)
T TIGR03866 282 KVIKSIK 288 (300)
T ss_pred cEEEEEE
Confidence 9888886
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=195.52 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=196.2
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|.+.|..+...--|++||++++|++|+|+.+..+... +++.. +.+|.++|..++|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~--L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAE--LTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeE--ecCCCCCeeEEeecccc
Confidence 49999999999999999999999999999998765430 12221 22899999999998
Q ss_pred -CcEEEEee-CCEEEEEEcCCceE--EEEEcCCCCCeEEEEEcCCC---eEEEEECCCcEEEEecCCC---ceEEEEcCC
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKGH 525 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~~--~~~~~~~~~~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~---~~~~~~~~h 525 (730)
|.+||+++ ||.|.||.-.+|+- ......|...|++++|.|.+ .|++++.||.|.|.+.++. ...+....|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 99999999 99999999888753 33456899999999999987 8999999999999988764 233445679
Q ss_pred CCCeEEEEEeCC---C-----------CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC--
Q 004789 526 QNRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-- 589 (730)
Q Consensus 526 ~~~V~~l~~spd---~-----------~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-- 589 (730)
.-.|++++|.|. | +.|++|+.|..|+||+..+++ -.+...+.+|. +.|+.++|.|.-
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~---dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHK---DWVRDVAWAPSVGL 221 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcc---hhhhhhhhccccCC
Confidence 999999999985 4 569999999999999998853 23333578898 899999999953
Q ss_pred --cEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 590 --IHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 590 --~~l~~-s~dg~I~iwd~~~~--~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
.++++ +.||++.||..+.. ....++. +.....++++.||..|..|++++.|+.|.+|.-.
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 56777 59999999987521 1111221 1236789999999999999999999999999754
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-23 Score=193.60 Aligned_cols=232 Identities=15% Similarity=0.179 Sum_probs=182.3
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec--CCCEEEEEeCCCcEEEeecCCCccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEE 420 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp--dg~~L~s~s~dg~I~iWd~~~~~~~~~~~ 420 (730)
-|+.|||++.|++|+|+.+.+........ +| .||.++|+.++|.. -|.+||+++.||.|.||+-+.++....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~--~L--~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~-- 95 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLA--EL--TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA-- 95 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeee--Ee--cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh--
Confidence 38999999999999999998533222222 33 46999999999987 899999999999999999877754211
Q ss_pred cccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCc---eEEEEEcCCCCCeEEEE
Q 004789 421 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFI 492 (730)
Q Consensus 421 ~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~---~~~~~~~~~~~~v~~i~ 492 (730)
.....|...|++++|. |-.|++++ ||.|.|.+.++. ...+....|.-.|++++
T Consensus 96 -------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 96 -------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred -------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 1111599999999998 77799999 999999988654 23344568999999999
Q ss_pred EcCCC---------------eEEEEECCCcEEEEecCCC--ceEEEEcCCCCCeEEEEEeCCC----CEEEEEeCCCcEE
Q 004789 493 LLPQD---------------LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL----NVLVSSGADAQLC 551 (730)
Q Consensus 493 ~spdg---------------~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~spd~----~~l~s~s~dg~I~ 551 (730)
|.|.. .|++|+.|+.|+||+..++ ..-+++.+|.+.|+.++|.|.- .+|++++.||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 99862 4999999999999998876 3445689999999999999964 5799999999999
Q ss_pred EEEcCCC-ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC
Q 004789 552 VWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 606 (730)
Q Consensus 552 vwd~~~~-~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~ 606 (730)
||..+.. +.-....+ .... ..+..+.||..|..|++ +.|+.+.+|--.
T Consensus 237 Iwt~~~e~e~wk~tll----~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL----EEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCccccccc----ccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9987742 11111222 2222 57999999999999999 589999999643
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.3e-23 Score=215.67 Aligned_cols=263 Identities=15% Similarity=0.181 Sum_probs=211.4
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEE-EEEec-CCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSH-SGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~-v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
.-++-.++++|.||++++|+-.+....+ ...+ .+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|...+...
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~~~~l~---~~~~--~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P--- 93 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKGKQYLE---THAF--EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP--- 93 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccCccccc---ceec--ccCcceeeccceeccccCcceEeecccceEEEEecCCCCc---
Confidence 4556688999999999999986432221 1222 247777777 88876 444599999999999998765543
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 496 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd 496 (730)
.. +..+|...|.|+... ...+++|+ |.++++|-. +++...+.+|...|++++.-|.
T Consensus 94 ------------------~~--~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 94 ------------------LY--TLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred ------------------hh--hhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCC
Confidence 11 122799999999977 55599999 999999986 5667779999999999999999
Q ss_pred CeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 497 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 497 g~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
+.++||+.|.+|++|.- ++.++++.+|.+.|+.+++-+++ .+++++.||.|++|++.. ..+. ...+|+
T Consensus 152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~-~~~ght-- 219 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLL-EMHGHT-- 219 (745)
T ss_pred CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceee-eeeccc--
Confidence 89999999999999984 78899999999999999999875 578999999999999965 3444 456787
Q ss_pred CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 577 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
+.|+++....++..+++ |.|++++||+.. ++.+.+..+ ...|+++++-++|. +++|+.||.||||....
T Consensus 220 -n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 220 -NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 79999997777777777 799999999975 677777542 56899999988887 66777899999998763
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.4e-21 Score=198.40 Aligned_cols=317 Identities=15% Similarity=0.161 Sum_probs=238.3
Q ss_pred cCCCC--CCCeeEee--cCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCC
Q 004789 338 STSLP--DADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 413 (730)
Q Consensus 338 ~~~sp--dg~~lat~--~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~ 413 (730)
.+||+ .|..|... +.+..+.+||.......+.... ..+.|..+.|+|.+..|+.....+.+..|+.+.+
T Consensus 160 vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-------sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 160 VAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-------SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGG 232 (626)
T ss_pred eeecccCCCceEEEecCCCccccchhhchhhhccCccee-------ccceEEEEEeccCCCcEEEEeCCceEEEEEccCC
Confidence 34444 35555443 4557899999975444444443 4678899999998887888888899999998877
Q ss_pred ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEE
Q 004789 414 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 491 (730)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i 491 (730)
..... .+ ++.+.....|.|++|. +.-+++|. +|.|.||+..+.+..+....|.+.|.++
T Consensus 233 ~l~k~--------------~~-----~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L 293 (626)
T KOG2106|consen 233 SLVKR--------------QG-----IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSL 293 (626)
T ss_pred ceEEE--------------ee-----ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEE
Confidence 65221 01 1111233679999999 77788888 9999999999888888777999999999
Q ss_pred EEcCCCeEEEEECCCcEEEEecCCCc-----------e-----------------------------EEEEcCCCCCeEE
Q 004789 492 ILLPQDLFAFGFDDSSILVHCPCTKK-----------T-----------------------------KAKLKGHQNRITC 531 (730)
Q Consensus 492 ~~spdg~l~sgs~dg~I~iwd~~~~~-----------~-----------------------------~~~~~~h~~~V~~ 531 (730)
+...+|.|++|+.|..|..||-.-.+ . .....+|......
T Consensus 294 ~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 294 CMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred EEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 99999977779999999999832110 0 0122457777888
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 610 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~ 610 (730)
++.+|+.+.+++++.|+.+++|+ ..+....+.+. .++.++.|+|.| .+++| ..|...+.|.++...
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEEec----------CceeEeeccCcc-eEEEeeccceEEEEeccccee
Confidence 99999999999999999999999 22222222222 578899999999 77775 889999999988655
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 611 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 611 ~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+. +... +.++..+.|+|+|.+||.|+.|+.|+||.+........... -++..+|. .+.|++ |+++|.+
T Consensus 441 v~-~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~------k~~gs~it--hLDwS~-Ds~~~~~ 508 (626)
T KOG2106|consen 441 VT-IHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG------KCSGSPIT--HLDWSS-DSQFLVS 508 (626)
T ss_pred EE-EEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee------eecCceeE--EeeecC-CCceEEe
Confidence 54 4332 88999999999999999999999999999876543333221 12235566 999999 8999999
Q ss_pred EeCCCcEEEEeCCCC
Q 004789 691 GLTNGRVHVIEPLES 705 (730)
Q Consensus 691 ~s~Dg~I~iWd~~~~ 705 (730)
-+-|-.|..|.....
T Consensus 509 ~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 509 NSGDYEILYWKPSEC 523 (626)
T ss_pred ccCceEEEEEccccC
Confidence 999999999965443
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=205.06 Aligned_cols=352 Identities=14% Similarity=0.146 Sum_probs=252.9
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+++.+.+.||.+-.||.|.||++.. .-+....+.+ +-...|.+++|++.|+ |.+.+.+|.|.-||+.+.+...
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g-~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHG-PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC----CceeeEEEec-CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeE
Confidence 46778888899999999999999973 4555555544 3567899999996665 8999999999999999887654
Q ss_pred c-c------cc--------------ccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcC
Q 004789 418 E-E------EN--------------VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 473 (730)
Q Consensus 418 ~-~------~~--------------~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~ 473 (730)
. . .+ .+.....++...+.+.........+++|.+++|+ +..+++|+ ||.|++||+.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 3 1 00 1112233344444443333333456899999999 77799999 9999999999
Q ss_pred CceEEEEEc-------C-CCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe
Q 004789 474 TFQTLATFA-------N-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 545 (730)
Q Consensus 474 t~~~~~~~~-------~-~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s 545 (730)
++..+.... . ...-|+++.+-.++.|++|...|+|.+||...+..++.+..|...|.+++..++++++++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 998777322 1 23356888888788999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCceec---------ce---------------------------e------------------------
Q 004789 546 ADAQLCVWDAVGWKKLC---------SK---------------------------F------------------------ 565 (730)
Q Consensus 546 ~dg~I~vwd~~~~~~~~---------~~---------------------------~------------------------ 565 (730)
.|+.|..|...+..... .. .
T Consensus 265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~ 344 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN 344 (691)
T ss_pred CCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccc
Confidence 99998877655431100 00 0
Q ss_pred -ec---------------ccccCCC----------CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC-----------
Q 004789 566 -LH---------------SFQTGLV----------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL----------- 608 (730)
Q Consensus 566 -i~---------------~~~~~h~----------~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~----------- 608 (730)
+. ....++. +....|.+.+.+|+|++++.+.-...+||.+...
T Consensus 345 ~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~ 424 (691)
T KOG2048|consen 345 RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDV 424 (691)
T ss_pred eEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccc
Confidence 00 0000000 0114578889999999999876445555544320
Q ss_pred ---------------------------------------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 609 ---------------------------------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 609 ---------------------------------------~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
+.+..+........|..+..|++|+||++.+.+|.|.+|++
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred hhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 00001111112567889999999999999999999999999
Q ss_pred CCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 650 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 650 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
.+++........ ...|+ +++++|.+.+.++.+..|+.|.-+|++..
T Consensus 505 ~~~~~~~l~~rl--------n~~vT--a~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 505 ETLESHLLKVRL--------NIDVT--AAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred ccceeecchhcc--------Cccee--eeeccccccCcEEEEecCCeEEEEecchh
Confidence 998755443211 23355 99999767788999999999999999544
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=206.08 Aligned_cols=289 Identities=17% Similarity=0.220 Sum_probs=228.8
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
-..+|.++|||.+.+.||.+-.||.|.+|++..+-. ....+.++....|.+++|+ +..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---------------------~~~vi~g~~drsIE~L~W~e~~R 82 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---------------------LEPVIHGPEDRSIESLAWAEGGR 82 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCce---------------------eeEEEecCCCCceeeEEEccCCe
Confidence 478999999999999999999999999999866432 2222333567789999999 888
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEE--EEcCCCCCeEEEEE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAY 534 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~ 534 (730)
|++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .+++|+.||.++.++...++... .+...+++|.+++|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 88888 9999999999999999999999999999999999 99999999988888887776543 34445789999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeec--ccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCcee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 611 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~--~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~ 611 (730)
+|++..+++|+.||.|++||..++........+ ...++.. .-|+++.|-.++ .+++| +.|+|.+||...+..+
T Consensus 163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence 999999999999999999999987543311111 1112122 467888888776 45555 7899999999999999
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
+.+.. |...|.+++..+++..+++++.|+.|.-|...+++...... ....+|...|. +++..+ ..+++|
T Consensus 239 qS~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvr--s~av~~---~~l~sg 307 (691)
T KOG2048|consen 239 QSHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVR--SMAVIE---NALISG 307 (691)
T ss_pred hhhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee----ccccCCcccce--eeeeec---ceEEec
Confidence 88875 69999999999999999999999999999887765421111 11133456688 777766 489999
Q ss_pred eCCCcEEEEeCCC
Q 004789 692 LTNGRVHVIEPLE 704 (730)
Q Consensus 692 s~Dg~I~iWd~~~ 704 (730)
|.|+.+.+-....
T Consensus 308 G~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 308 GRDFTLAICSSRE 320 (691)
T ss_pred ceeeEEEEccccc
Confidence 9999888766544
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=7.7e-23 Score=212.98 Aligned_cols=294 Identities=15% Similarity=0.108 Sum_probs=208.7
Q ss_pred EEEEEecC---CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 385 VRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 385 ~~v~fspd---g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
.++.|++. ...|+.+..||.|.++|...... .++...+.... .|.+.|..+.|. ...|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f--------------r~ee~~lk~~~---aH~nAifDl~wapge~~l 115 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF--------------RLEERQLKKPL---AHKNAIFDLKWAPGESLL 115 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc--------------chhhhhhcccc---cccceeEeeccCCCceeE
Confidence 33667653 23688889999999999866543 11111112111 599999999999 4568
Q ss_pred EEee-CCEEEEEEcCCceEEEE--EcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCc-----------------
Q 004789 460 FSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----------------- 517 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~--~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~----------------- 517 (730)
++++ |.++++||+++.+++.. +.+|.+.|.+++|+|++ .|++|+.||.|.|||++...
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 8888 99999999999998877 88999999999999999 99999999999999987432
Q ss_pred ----------eEEEEcCCCCCeEE---EEEeCCCCEEEEEeC-CCcEEEEEcCCCcee-cceeec--ccccCCCCCCCCe
Q 004789 518 ----------TKAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL-CSKFLH--SFQTGLVPETTIV 580 (730)
Q Consensus 518 ----------~~~~~~~h~~~V~~---l~~spd~~~l~s~s~-dg~I~vwd~~~~~~~-~~~~i~--~~~~~h~~~~~~v 580 (730)
.+...+.+...|.+ +.+..|...||+++. |+.|+|||++..... ...+.. .+. .|....-.+
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~-t~skrs~G~ 274 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP-THSKRSVGQ 274 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc-Ccccceeee
Confidence 01122234445555 556678889999887 999999999873211 011111 011 111111356
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEE
Q 004789 581 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 657 (730)
Q Consensus 581 ~~l~~spdg~~l~~-s~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 657 (730)
.++.....|.+|++ |.|++|++|++.+.. ++..+.+.........-..+||+.+|++|+.|...++|.+.+.+.--.
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 77888888899888 799999999997643 333333222122333445689999999999999999999988654322
Q ss_pred eecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 658 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 658 ~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+. .|| .-.|. +|+|.|..-.-+++|++|-+++||++..+
T Consensus 355 ~l------~Gh-t~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LL------LGH-TREVT--TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hh------hCc-ceEEE--EEeeccccCCCceeeccCcceEEEeccCc
Confidence 21 277 44466 99999866667889999999999999765
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.7e-23 Score=205.94 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=195.3
Q ss_pred CEEEEEeCC-CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEE
Q 004789 394 DFLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 469 (730)
Q Consensus 394 ~~L~s~s~d-g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~v 469 (730)
.|++++... ..+.+|.+..... ..+.. --.++|.|++-+ |.+|+.|+ .|.|++
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~--------------------~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYl 107 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQ--------------------VVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYL 107 (476)
T ss_pred hheeeecccCccccccccCchhh--------------------hhhhc---ccccceeeeecCCCceEEEeecccCcEEE
Confidence 577777664 5788888765443 11111 145789999988 88888887 999999
Q ss_pred EEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecC---------CCceEEEEcCCCCCeEEEEEeCCC-
Q 004789 470 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLSL- 538 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~---------~~~~~~~~~~h~~~V~~l~~spd~- 538 (730)
|.+.+|..+..+.+|-..|+|+.|+.|| +|++|+.||.|.+|.+. +-++++.|..|+-+|+++...+.|
T Consensus 108 WelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 108 WELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT 187 (476)
T ss_pred EEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence 9999999999999999999999999999 99999999999999864 236788999999999999887753
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc-------
Q 004789 539 -NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------- 609 (730)
Q Consensus 539 -~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~------- 609 (730)
.+|+++|.|.++++||+..+......... ..+.+++.+|.++.+++| .+|.|.+.++....
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITFP----------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEecC----------CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 68999999999999999997544332222 579999999999999996 89999988875422
Q ss_pred ---------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 610 ---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 610 ---------~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
.+..+.++.....|+|++++-||.+|++|+.||+|+|||+.+.++++++.. ..++|+ .+.+
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~--------~kgpVt--nL~i 327 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT--------SKGPVT--NLQI 327 (476)
T ss_pred ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh--------hccccc--eeEe
Confidence 233344332234999999999999999999999999999999988877652 245576 5555
Q ss_pred ec
Q 004789 681 HP 682 (730)
Q Consensus 681 sp 682 (730)
.|
T Consensus 328 ~~ 329 (476)
T KOG0646|consen 328 NP 329 (476)
T ss_pred ec
Confidence 44
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=8.3e-23 Score=205.92 Aligned_cols=249 Identities=15% Similarity=0.171 Sum_probs=193.3
Q ss_pred CCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce----------EEEEEcCCCCCeEEEEEcCCC--eEEEEECCCc
Q 004789 444 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ----------TLATFANPPPIATYFILLPQD--LFAFGFDDSS 507 (730)
Q Consensus 444 ~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~----------~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~ 507 (730)
.|.+.|+.+.+- ...+|+.+ .+.|+|||..+.. +..++.+|...-.+++|++.. .+++|+.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488899888888 56677777 8999999986422 223677898877889999988 9999999999
Q ss_pred EEEEecCCCc-------eEEEEcCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCC
Q 004789 508 ILVHCPCTKK-------TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 579 (730)
Q Consensus 508 I~iwd~~~~~-------~~~~~~~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~ 579 (730)
|++||+.... ....+.+|...|..++|++- ...+++++.|+.+.|||++++. ..+ .....+|. +.
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---~~~-~~~~~ah~---~~ 274 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---SKP-SHSVKAHS---AE 274 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---CCC-cccccccC---Cc
Confidence 9999987542 34667899999999999994 4678899999999999999741 222 22556777 79
Q ss_pred eEEEEEecCCcEE-EEE-ecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCceEE
Q 004789 580 VNHIQFHPDQIHL-LSI-HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 580 v~~l~~spdg~~l-~~s-~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
|.|++|+|-+.++ |++ .|++|++||+++.. ++.++. +|...|.++.|||+. ..|++++.|+.+.|||+..-...
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE--GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc--CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999999965554 554 79999999999865 444554 579999999999964 67889999999999998753222
Q ss_pred EEee-----cc--cccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 656 CQIN-----LT--AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 656 ~~~~-----~~--~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.... +. -|+-.|| ...|. .+.|+|..+-.++|.++|+.+.||++..
T Consensus 353 q~~eda~dgppEllF~HgGH-~~kV~--DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGH-TAKVS--DFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCc-ccccc--cccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1100 00 1222366 55688 9999997777899999999999999963
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=200.30 Aligned_cols=283 Identities=13% Similarity=0.136 Sum_probs=223.5
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC-EEEEEeCCCcEEEeecCCCcc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~~~~~~ 415 (730)
...+-|....+.+++.||+++||.+++...+ .++.+.+ -..+|.+++|.|+|. .+++++.....+.||+.+.+.
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3578999999999999999999999976655 4555544 578999999999999 888999999999999987765
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCC-CCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 491 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h-~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i 491 (730)
... ....++ ...+..+..+ +++|+..+ .|.|.+....|++.+.+++ -.+.|..+
T Consensus 293 ~k~---------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 293 TKL---------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ccc---------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 221 001122 2345566666 88999999 9999999999999998886 56778999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce-ecceeecc
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLHS 568 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~-~~~~~i~~ 568 (730)
+|+.|| .|++++.+|.|++||++...+++.+.... -.-++++.++++.+||+|+..|.|.|||..+... ...+++.+
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 999999 88888889999999999999999987421 2235677789999999999999999999765211 11233432
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEE-E--ecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~-s--~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
+ ..-. ..|+++.|++|++.|+. + ..+.+++..+.+......+.... .-+.|+|++|||.|.+++.|.++|.+
T Consensus 431 ~-dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 431 V-DNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred h-hhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 2 2222 57999999999999987 3 66789999998877666665431 25679999999999999999999999
Q ss_pred EEEECC
Q 004789 645 KVFDTS 650 (730)
Q Consensus 645 ~iwd~~ 650 (730)
.+|.+.
T Consensus 507 ~l~kL~ 512 (514)
T KOG2055|consen 507 HLFKLH 512 (514)
T ss_pred eeEeec
Confidence 999874
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=203.90 Aligned_cols=242 Identities=13% Similarity=0.135 Sum_probs=193.4
Q ss_pred CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 456 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
+.+++++. ...|.+|.+...........-++.|.+++-+|+| +++.|+..|.|++|.+.+|..+..+.+|-..|+++
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 67888888 5789999997665555444567789999999999 88888899999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCC----ceecceeecccccCCCCCCCCeEEEEEecC--CcEEEE-EecCcEEEEeC
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEA 605 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~----~~~~~~~i~~~~~~h~~~~~~v~~l~~spd--g~~l~~-s~dg~I~iwd~ 605 (730)
.|+.||.++++|+.||.|.+|++..- ......++. .+.+|. -+|+.+...+. ..++++ +.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99999999999999999999987431 001234455 567787 68999888764 356666 79999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE--E----EE--ee-cccccCCCCcc-cceee
Q 004789 606 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--R----CQ--IN-LTAYAQPGTIS-LELYP 675 (730)
Q Consensus 606 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~--~----~~--~~-~~~~~~~gh~~-~~v~~ 675 (730)
..+..+.++.. ...+.+++.+|-++.+++|+++|.|.+.++..... . +. .. .......||.. ..|.
T Consensus 206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT- 281 (476)
T KOG0646|consen 206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT- 281 (476)
T ss_pred ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee-
Confidence 99999888864 78899999999999999999999999988765331 1 00 00 00011226644 4677
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
|++.+- |+..|++|+.||.|+|||+.+.++
T Consensus 282 -cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 282 -CLAIST-DGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred -EEEEec-CccEEEeeCCCCCEEEEecchHHH
Confidence 888887 899999999999999999988754
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.5e-22 Score=191.01 Aligned_cols=286 Identities=16% Similarity=0.167 Sum_probs=212.2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE
Q 004789 384 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 461 (730)
Q Consensus 384 V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s 461 (730)
-.|+.||+.|.+||+|+.||.|.|||+.+-.. +.+ .++|..+|.+++|| |+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar~-----lsaH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------ARM-----LSAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------hhh-----hhccccceeEEEecCCCCEeee
Confidence 78999999999999999999999999876543 111 12699999999999 999999
Q ss_pred ee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcC-----CCCCeEEEE
Q 004789 462 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLA 533 (730)
Q Consensus 462 ~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~ 533 (730)
++ |..|.+||+..|.+++.+. ...+|+.+.|+|.. ..++.-.+..-.+.++..++. ..+.. ......+..
T Consensus 83 sS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCcccccccccccc
Confidence 99 9999999999999998886 67889999999987 444444444455555554221 11111 111222346
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC----
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL---- 608 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~---- 608 (730)
|.+.|+++++|...|.+.++|..+-+......+.+ . ..|.++.++..|++++. +.|..|+.|+++.-
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 89999999999999999999999965554444431 1 46889999999999999 79999999998621
Q ss_pred ---ce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 609 ---NH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 609 ---~~--~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
++ .+.+..--+...-.+++||.+|.|+++|+.. ..+|||....|.+++.+. |..+.... .|.|+|
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------G~kgE~l~--DV~whp 303 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------GTKGEELL--DVNWHP 303 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-------CCchhhee--eccccc
Confidence 11 1111110124455689999999999988754 679999999999999987 54334344 899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 683 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
-...+++- ..|.|+||.....+ .|...+|
T Consensus 304 -~rp~i~si-~sg~v~iw~~~~~e-nwsafAP 332 (405)
T KOG1273|consen 304 -VRPIIASI-ASGVVYIWAVVQVE-NWSAFAP 332 (405)
T ss_pred -ceeeeeec-cCCceEEEEeeccc-chhhcCc
Confidence 56667766 78999999987654 3554443
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.1e-21 Score=198.23 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=197.8
Q ss_pred CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE-EEee-CCEEEE
Q 004789 394 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 469 (730)
Q Consensus 394 ~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l-~s~s-dg~I~v 469 (730)
..+++++.|+.+++||..+++. ..... .+ ..+.+++|+ ++.+ ++++ ++.|++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~---------------------~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV---------------------TRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQV 57 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce---------------------EEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEE
Confidence 4678899999999999866543 11111 22 346778998 6665 4555 899999
Q ss_pred EEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEE-EECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC
Q 004789 470 FSLETFQTLATFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 547 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 547 (730)
||..+++....+..+.. +..++|+|++ .+++ ++.++.|++||+.+++.+..+.. ...+.+++|+|+|.++++++.+
T Consensus 58 ~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 58 IDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence 99999988887765443 4678999999 5554 45689999999999888777763 3457889999999999988876
Q ss_pred C-cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC---C--
Q 004789 548 A-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M-- 619 (730)
Q Consensus 548 g-~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~---h-- 619 (730)
+ .+.+||..+++.... ...+ ..+..++|+|+++++++ + .++.|++||+.+++.+..+.... +
T Consensus 136 ~~~~~~~d~~~~~~~~~-----~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDN-----VLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE 205 (300)
T ss_pred CCeEEEEeCCCCeEEEE-----EEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc
Confidence 5 467789887543211 1122 24568999999998876 4 58999999999988776654211 1
Q ss_pred CCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE-eCCCcE
Q 004789 620 DLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRV 697 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~-s~Dg~I 697 (730)
......++|+|++++++++ +.++.|.+||+.+++.+..+.. + ..+. +++|+| ++++|+++ +.+|.|
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~---~~~~--~~~~~~-~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV------G---QRVW--QLAFTP-DEKYLLTTNGVSNDV 273 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe------C---CCcc--eEEECC-CCCEEEEEcCCCCeE
Confidence 1234568899999986554 4567899999999887655431 2 2466 899999 78888876 568999
Q ss_pred EEEeCCCCceeeec
Q 004789 698 HVIEPLESEVEWGK 711 (730)
Q Consensus 698 ~iWd~~~~~~~w~~ 711 (730)
++||+.+++.....
T Consensus 274 ~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 274 SVIDVAALKVIKSI 287 (300)
T ss_pred EEEECCCCcEEEEE
Confidence 99999999875444
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.8e-22 Score=223.28 Aligned_cols=259 Identities=14% Similarity=0.195 Sum_probs=206.2
Q ss_pred CCCcEEEEEEecCCCEEEEEe--CCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCc
Q 004789 380 FGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s--~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 457 (730)
+...|.++..+|||..+|+|+ .||.++||+.+.--..
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------------------------------------- 50 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------------------------------------- 50 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch-----------------------------------------
Confidence 566799999999999999999 8999999986432110
Q ss_pred EEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC------------------Cce
Q 004789 458 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------------------KKT 518 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~------------------~~~ 518 (730)
...+|..-.+.+.++..|.+.|+|+.|+||| +||+|+.|+.|.||+... .++
T Consensus 51 ---------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~ 121 (942)
T KOG0973|consen 51 ---------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV 121 (942)
T ss_pred ---------hhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE
Confidence 0011111134556677899999999999999 999999999999999762 136
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 597 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d 597 (730)
+..+.+|.+.|.+++|+|++.+|++++.|++|.+||.++. ..+. ...+|. +.|-.+.|.|-|+|+++ +.|
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~-vl~~H~---s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLK-VLRGHQ---SLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-----eeee-eeeccc---ccccceEECCccCeeeeecCC
Confidence 6788899999999999999999999999999999999994 3334 678888 79999999999999999 899
Q ss_pred CcEEEEeCCCCceeeeecCC----CCCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEeecccccCCCCc
Q 004789 598 GQIDVYEAPTLNHTSQLVPD----KMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~----~h~~~v~~~~~spdg~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
++|++|+..+....+.+..+ .-...+.++.|||||++|++... -..+.|.+..+.+.-..+. ||+
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH~ 265 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GHS 265 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cCC
Confidence 99999998776666555432 12456889999999999997643 2568899988888666666 885
Q ss_pred ccceeeEEEEEecC----CCC------------EEEEEeCCCcEEEEeCCCCce
Q 004789 670 SLELYPLVIAAHPL----EPN------------RIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 670 ~~~v~~~~v~~sp~----~~~------------~las~s~Dg~I~iWd~~~~~~ 707 (730)
. ++. +++|+|. ... .+|+||.|++|.||.....++
T Consensus 266 ~-p~e--vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 266 A-PVE--VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred C-ceE--EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 4 688 9999873 011 688999999999999976654
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.1e-22 Score=189.52 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=204.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|.+..|+++++||++++|++... .....+. |..++.+++|.++.. +++|+.||.|+.+|+.++...
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~~~~-----~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKLKFK-----HGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccch---hhhhhee-----cCCceeeeeccCCce-EEEeccCceEEEEEecCCcce-
Confidence 578899999999999999999999753 2223333 899999999999765 899999999999998877641
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
. .+.|..+|.|+.++ ...+++|+ |++|++||.+.......+.. ...|.|+..+
T Consensus 89 ------------------~-----igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~ 144 (323)
T KOG1036|consen 89 ------------------Q-----IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS 144 (323)
T ss_pred ------------------e-----eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc
Confidence 1 12599999999999 77888999 99999999987555555543 3378888876
Q ss_pred CCCeEEEEECCCcEEEEecCCCceEEEE--cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 495 PQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 495 pdg~l~sgs~dg~I~iwd~~~~~~~~~~--~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
.+ .|++|+.|..|.+||++......+. ....-.+.|+++-|++.-.++++-||.|.+=.++..+....+.. .++.
T Consensus 145 g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky--aFkC 221 (323)
T KOG1036|consen 145 GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY--AFKC 221 (323)
T ss_pred CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce--eEEe
Confidence 44 8999999999999999976543322 12456789999999888899999999998876665421111111 1222
Q ss_pred CCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 573 LVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 573 h~~------~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
|.. ...+|.+|+|+|-...|++ |.||.|.+||+.+.+.+..+.. ....|.+++|+.||..||.++.
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence 210 1147899999998888999 5999999999999888888753 3678999999999999999874
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1e-20 Score=192.16 Aligned_cols=319 Identities=16% Similarity=0.213 Sum_probs=238.1
Q ss_pred cCCCCCCCeeEeecCCC--------cEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec--CCCEEEEEe--CCCcE
Q 004789 338 STSLPDADSAVCAKSLE--------KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALT--QTATH 405 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg--------~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp--dg~~L~s~s--~dg~I 405 (730)
....||.-.+++|-.-| .||+||.. ...++...+ .....|.|++||+ .|.+|+... .+..+
T Consensus 110 ~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv------~L~TL~V~g-~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~l 182 (626)
T KOG2106|consen 110 MAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSV------TLSTLHVIG-FFDRGVTCVAFSKINGGSLLCAVDDSNPHML 182 (626)
T ss_pred EeecCCceeeccCcccccCCCcCCCeeeecccc------cceeeeeec-cccccceeeeecccCCCceEEEecCCCcccc
Confidence 35678888888775555 48999964 233333222 3678899999998 455555543 34678
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEeeCCEEEEEEcCCceEEEE--
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLAT-- 480 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~sdg~I~vwd~~t~~~~~~-- 480 (730)
.|||++.+..... .. ...+.|....|+ .+.+++++.|.+.+|+.+++...++
T Consensus 183 SVWdWqk~~~~~~-----------------vk------~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~ 239 (626)
T KOG2106|consen 183 SVWDWQKKAKLGP-----------------VK------TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQG 239 (626)
T ss_pred chhhchhhhccCc-----------------ce------eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEee
Confidence 8999876654111 11 245678888898 6778888899999999998876554
Q ss_pred -EcCC-CCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 004789 481 -FANP-PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 481 -~~~~-~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~ 558 (730)
+..+ ...|.|++|.++|-+++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|+.|..||-.-.
T Consensus 240 ~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYR 318 (626)
T ss_pred ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEecccccc
Confidence 3333 35799999999998899999999999999888887777799999999999999865 55999999999993221
Q ss_pred ceec------ceeec----------------------------ccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 004789 559 KKLC------SKFLH----------------------------SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 603 (730)
Q Consensus 559 ~~~~------~~~i~----------------------------~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iw 603 (730)
+... .-++. ....+|. .....++.+|+...+++ +.|+.+++|
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~---delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG---DELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc---cceeeEEcCCChhheeeccCcceEEEc
Confidence 1100 00000 0123444 56778889998888888 699999999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 683 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 683 (730)
+ ..+++.+... ..++.++.|+|.| .++.|+..|...+.|.++..++..-. . +.++. +|+|+|
T Consensus 396 ~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-------d--~~~ls--~v~ysp- 457 (626)
T KOG2106|consen 396 N--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-------D--NEQLS--VVRYSP- 457 (626)
T ss_pred c--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-------c--CCceE--EEEEcC-
Confidence 9 4555544433 7889999999999 99999999999999999976665533 1 44577 999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 684 EPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 684 ~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
+|.+||.|+.|+.|+||.+.....+
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCcE
Confidence 8999999999999999999876544
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1e-21 Score=186.84 Aligned_cols=280 Identities=14% Similarity=0.155 Sum_probs=209.8
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCCCCc----ceeee----ecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecC
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTL----LLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQ 411 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~~~~----~~~~~----~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~ 411 (730)
...|+++++|+.||.|.+||+++..+-+ .+... .-...+|+-.|..+.|-| |.-.+.++|.|.+++|||..
T Consensus 53 ~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn 132 (397)
T KOG4283|consen 53 LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN 132 (397)
T ss_pred cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecc
Confidence 4579999999999999999998644111 11111 111257999999999999 45577888899999999998
Q ss_pred CCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-----CcEEEEee-CCEEEEEEcCCceEEEEEcCCC
Q 004789 412 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPP 485 (730)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-----~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~ 485 (730)
+.+.... + ...+.|++-+++ -.++|+|. +-.|++.|+.+|.+-+++.+|.
T Consensus 133 TlQ~a~~----------F--------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 133 TLQEAVD----------F--------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred cceeeEE----------e--------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 8765111 1 244566666666 34567777 7899999999999999999999
Q ss_pred CCeEEEEEcCCC--eEEEEECCCcEEEEecCCC-ceEEEE--------------cCCCCCeEEEEEeCCCCEEEEEeCCC
Q 004789 486 PIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKL--------------KGHQNRITCLAYSLSLNVLVSSGADA 548 (730)
Q Consensus 486 ~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~-~~~~~~--------------~~h~~~V~~l~~spd~~~l~s~s~dg 548 (730)
+.|.++.|+|.. .|++|+.||.|++||++.- .+...+ ..|.+.|+.++|+.++.++++++.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 999999999998 8999999999999999753 222222 34778999999999999999999999
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 627 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~ 627 (730)
.+++|+..+|+........ ..|....+.-..+. +-+...++. -.++.+.++++-.+..++.+.. |...+.+.+
T Consensus 269 r~r~wn~~~G~ntl~~~g~---~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--h~k~i~c~~ 342 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGP---IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--HLKRINCAA 342 (397)
T ss_pred ceEEeecccCccccccccc---ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--ccceeeEEe
Confidence 9999999887532211111 11110001111233 333333333 4679999999999999988875 588899999
Q ss_pred EecCCCEEEEEEcCCeEEEEECC
Q 004789 628 YSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 628 ~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+-|+-+..++|..|+.|+.|-..
T Consensus 343 ~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 343 YRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ecCchhhhhccccCCcccccccc
Confidence 99999999999999999999863
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=196.44 Aligned_cols=284 Identities=14% Similarity=0.194 Sum_probs=219.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
..+.|++|.|+|....|++|+.|++++||.+..... ..++... -...+|.+.+|. |.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGH 270 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCc
Confidence 468899999999999999999999999998865543 1122111 146789999999 77
Q ss_pred -EEEEee-CCEEEEEEcCCceEEEE--EcCC-CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 458 -HLFSAS-GGKISIFSLETFQTLAT--FANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 458 -~l~s~s-dg~I~vwd~~t~~~~~~--~~~~-~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
.+++++ ....+.||+.+.+..+. ..++ ...+..+.++|++ +|+..+..|.|.+....+++.+..++ ..+.|..
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 777777 78999999998765443 2233 3467788999999 99999999999999999999998887 5688999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT--- 607 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~--- 607 (730)
++|+.|++.|++++.+|.|.+||++... ++.++...-. -.-+++|.+++|.+||+| ..|.|.|||..+
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNS-----CLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcc-----eEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 9999999999999999999999999853 2331211111 133578888999999996 678899999653
Q ss_pred ---CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 608 ---LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 608 ---~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
.+++..+.. -...|+++.|++|++.|+.+|. +..+++-++.+...-..+... +..-+.|+ |++|+|
T Consensus 422 s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vt--c~aFSP 492 (514)
T KOG2055|consen 422 STNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVT--CMAFSP 492 (514)
T ss_pred cCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-----CCcccceE--EEEecC
Confidence 234444422 2678999999999999987765 578999999876654444422 21223366 999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 004789 683 LEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~ 703 (730)
.+.+||.|..+|.|.+|.+.
T Consensus 493 -~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 -NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCceEEeecCCCceeeEeec
Confidence 89999999999999999875
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.4e-21 Score=203.76 Aligned_cols=335 Identities=14% Similarity=0.161 Sum_probs=243.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.-++|+++.+++-+..|..++|... +...+...... .||.+.|..++|.|.|.||++.|.|.+-|++---..+.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~---d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-- 395 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTK---DKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-- 395 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEecc---Cccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeeccccccc--
Confidence 3578999999999999999999943 23333332222 58999999999999999999999999999975432211
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC--------------------
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-------------------- 474 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t-------------------- 474 (730)
-|.- +.+ ..-|...+.|+++- .-.+++|. ...+++|+...
T Consensus 396 ----------~wHE----iaR---PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 396 ----------EWHE----IAR---PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ----------ceee----ecc---cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 1221 111 11377888888888 44566666 46677775321
Q ss_pred -----------------------ceE----E-----------------------------EEEcCCCCCeEEEEEcCCC-
Q 004789 475 -----------------------FQT----L-----------------------------ATFANPPPIATYFILLPQD- 497 (730)
Q Consensus 475 -----------------------~~~----~-----------------------------~~~~~~~~~v~~i~~spdg- 497 (730)
|.. . +++-+|...|++++.+|+|
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn 538 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN 538 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence 100 0 1234889999999999999
Q ss_pred eEEEEECCC-----cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 498 LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 498 ~l~sgs~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
.+|+++... .|++|+..+-..++.+.+|+-.|+.++|+|||++|++.+.|+++.+|......... .... ..+.
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa-~~k~ 616 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFA-CLKA 616 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhc-cccc
Confidence 999988654 69999999888888999999999999999999999999999999999986532211 1122 2456
Q ss_pred CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEec-----CCCEEEEEEcCCeE
Q 004789 573 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSC-----DGKCIYVSCKSGHV 644 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~--~~~~~~~~~~h~~~v~~~~~sp-----dg~~l~sgs~dg~I 644 (730)
|. ..|.++.|+|++.++++ +.|..|.+|..... +.+..+....+...|+.+++.| .+..+++|-+.|.|
T Consensus 617 Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 617 HT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred cc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 76 68899999999999999 59999999999877 5555544445688999999975 23478899999999
Q ss_pred EEEECCCceEE-----EEeecccccCCCCcccceeeEEEEEecCC-------C--CEEEEEeCCCcEEEEeCC
Q 004789 645 KVFDTSTLELR-----CQINLTAYAQPGTISLELYPLVIAAHPLE-------P--NRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 645 ~iwd~~~~~~~-----~~~~~~~~~~~gh~~~~v~~~~v~~sp~~-------~--~~las~s~Dg~I~iWd~~ 703 (730)
.+|....-... ..+... ......+...|+ .+.|.|.. . ..|++|++|..++|+++.
T Consensus 694 ~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 694 VLWRRKREHRQVTVGTFNLDTR-LCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEEecccccccccceeeeeccc-cccccChHHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99996521111 111111 111122356688 88999742 1 257999999999999874
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=214.19 Aligned_cols=282 Identities=13% Similarity=0.191 Sum_probs=213.3
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
..+|-..++.++. ..++|+.+........|....-....-.-.+..|+|+. +.++||+++..|.|.+||+......
T Consensus 47 ~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn-- 123 (839)
T KOG0269|consen 47 VNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN-- 123 (839)
T ss_pred ecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccc--
Confidence 3466677777766 67778877654433333221100000123455677774 5678999999999999998763110
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
+.++. + ..|...|+++.|+ ..+|++|+ ||.|++||++..+...++.+....|..+.|+
T Consensus 124 ----------------k~l~~-f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 124 ----------------KLLTV-F-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred ----------------hhhhH-h-hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 01111 1 1599999999999 88999999 9999999999999999999988999999999
Q ss_pred CCC--eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc
Q 004789 495 PQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 495 pdg--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
|.. .|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||..+.+......+. .
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---T 262 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---T 262 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe---e
Confidence 976 9999999999999999865 567788899999999999999999999999999999999975543333333 2
Q ss_pred CCCCCCCCeEEEEEecCCcEEE-EE---ecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEE
Q 004789 572 GLVPETTIVNHIQFHPDQIHLL-SI---HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVK 645 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~-~s---~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~ 645 (730)
. .+|.++.|-|..++.+ ++ .|-.|+|||++..-. ..++. .|...++.++|.. |...+.+++.||.|.
T Consensus 263 i-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 263 I-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred c-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccHHH
Confidence 2 5899999999876655 43 678899999976543 23443 5789999999964 567888999999987
Q ss_pred EEECCCc
Q 004789 646 VFDTSTL 652 (730)
Q Consensus 646 iwd~~~~ 652 (730)
.-.++.+
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 7666554
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.4e-22 Score=213.71 Aligned_cols=289 Identities=14% Similarity=0.112 Sum_probs=219.5
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---Cc
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 457 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~ 457 (730)
.....++...++-..++.++.. .+.||.+........ ..+.. .+.. .-.-.+..|.|. .+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~-------~~~~~-k~kq--------n~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-------CNHRF-KTKQ--------NKFYSAADVKWGQLYSN 101 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc-------eeeec-cccc--------ceeeehhhcccccchhh
Confidence 4567778888988888887765 667777665443111 11111 0000 111345567787 88
Q ss_pred EEEEee-CCEEEEEEcCC---ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 458 HLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t---~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
+||+++ .|.|.+||+.. .+.+..|..|...++++.|++.. +|++|+.||.|++||++..+...++.+....|++
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 999999 99999999987 56667888999999999999988 9999999999999999999999999999999999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 004789 532 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 609 (730)
Q Consensus 532 l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~ 609 (730)
|+|+| .+..++++...|.+.+||++... ++.. .+..|. ++|.++.|+|++.+||+ |.|+.|+|||+.+.+
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 99999 56889999999999999999843 2333 467788 89999999999999999 599999999997655
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCE-EEEEE--cCCeEEEEECCCceEE-EEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKC-IYVSC--KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~-l~sgs--~dg~I~iwd~~~~~~~-~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
....... ....+|.++.|-|+..+ |++++ .|-.|+|||++..-.- .++. .| ...+. .++|-..|.
T Consensus 254 ~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH-~~~vt--~i~W~~~d~ 322 (839)
T KOG0269|consen 254 AKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EH-TDSVT--GIAWDSGDR 322 (839)
T ss_pred ccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------cc-Ccccc--ceeccCCCc
Confidence 4322222 22789999999998765 44443 3788999999765322 3333 34 44466 899977677
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004789 686 NRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~ 705 (730)
..+.+++.||+|..-.++++
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 88999999999876555443
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.6e-21 Score=188.55 Aligned_cols=292 Identities=14% Similarity=0.130 Sum_probs=211.8
Q ss_pred CCCCcEEEEEEec----CC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEE
Q 004789 379 SFGGRVVRLIYSH----SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 453 (730)
Q Consensus 379 gh~~~V~~v~fsp----dg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~ 453 (730)
+|+.+|..++|++ +. +.+|++|. ..+.+|....... -.+++.+..+.|....+.++
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------IRLLQSYADEDHDESFYTCS 96 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------eeeeeeccCCCCCcceEEEE
Confidence 4899999999995 22 34455444 4777877644321 01333333335888888999
Q ss_pred Ee------CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEE--
Q 004789 454 LR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-- 522 (730)
Q Consensus 454 ~s------~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~-- 522 (730)
|+ +.++|.|+ -|.|+|.|+.++++...+.+|...|+.+.++|+. ++++++.|.+|++||+++..++..+
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 98 34678888 8999999999999999999999999999999999 9999999999999999999999887
Q ss_pred -cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec-------------ceeec---------ccccCCCCCCCC
Q 004789 523 -KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------------SKFLH---------SFQTGLVPETTI 579 (730)
Q Consensus 523 -~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~-------------~~~i~---------~~~~~h~~~~~~ 579 (730)
.+|.+.|.++.|+++|.++++++.|.+|++|++...+... ..++. +...-|. ..
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---ny 253 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NY 253 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---ch
Confidence 4599999999999999999999999999999998421100 00111 0112222 34
Q ss_pred eEEEEEecCCcEEEE-EecCcEEEEeCC-CCce-------------eeeecCCCCCCCeEEE--EEecCCCEEEEEEcCC
Q 004789 580 VNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNH-------------TSQLVPDKMDLPITYA--TYSCDGKCIYVSCKSG 642 (730)
Q Consensus 580 v~~l~~spdg~~l~~-s~dg~I~iwd~~-~~~~-------------~~~~~~~~h~~~v~~~--~~spdg~~l~sgs~dg 642 (730)
|.|+.|- |.++++ +.++.|..|..- -.+. +..+... ...++-+ +|.|-++.|+.|...|
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~--~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP--MCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC--ccceEEEEEeecHHHHHHhhccCCC
Confidence 5555554 567888 788899999862 1111 1122211 3344444 4557789999999999
Q ss_pred eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 643 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 643 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
.|++||++..++....... . ......|+ ..+|+. |+..|+..++|++|.-||..
T Consensus 330 ~v~vwdL~~~ep~~~ttl~-~---s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTLT-H---SKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEECCCCCCccCceEE-e---ccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999987663211110 0 11144577 889998 89999999999999999864
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.7e-20 Score=180.02 Aligned_cols=263 Identities=12% Similarity=0.118 Sum_probs=184.9
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCc
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 457 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 457 (730)
.+|.+-|.++.|.+.|+.+|+|+.|++|+|||.++...
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~------------------------------------------ 47 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG------------------------------------------ 47 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC------------------------------------------
Confidence 35888889999999999999999999999888643321
Q ss_pred EEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC---eEEEEECCCcEEEEecCC---------CceEEEEcCC
Q 004789 458 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT---------KKTKAKLKGH 525 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg---~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h 525 (730)
+..+....+.|.+.|..+.|.+-. .+|+++.|+++.||.=.. -....++...
T Consensus 48 ----------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 48 ----------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ----------------ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 234445667788889999997654 899999999999997421 1234556667
Q ss_pred CCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeec-------ccccCCCCCCCCeEEEEEecC---CcEEE
Q 004789 526 QNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLH-------SFQTGLVPETTIVNHIQFHPD---QIHLL 593 (730)
Q Consensus 526 ~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~-------~~~~~h~~~~~~v~~l~~spd---g~~l~ 593 (730)
.+.|+++.|.|. |-.|++++.||.++||+.-..-....-.++ ..+..+. .+..|+.|+|. ..+|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~---~~~~CvsWn~sr~~~p~iA 188 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK---QPCFCVSWNPSRMHEPLIA 188 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc---CcceEEeeccccccCceEE
Confidence 889999999994 668999999999999987542111111111 0111222 46779999983 56788
Q ss_pred EEecC------cEEEEeCCCC--ceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEEEECCCce--------
Q 004789 594 SIHEG------QIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTSTLE-------- 653 (730)
Q Consensus 594 ~s~dg------~I~iwd~~~~--~~~~~~~~~~h~~~v~~~~~spdg----~~l~sgs~dg~I~iwd~~~~~-------- 653 (730)
+|.+. .+.||....+ +..+.-...+|..+|+.++|.|+- ..||+++.|| |+||.+....
T Consensus 189 vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~ 267 (361)
T KOG2445|consen 189 VGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV 267 (361)
T ss_pred EEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc
Confidence 87554 7888876543 333322233679999999999963 5799999999 9999987421
Q ss_pred ----EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 654 ----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 654 ----~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
....+........+.|.+.|+ .+.|+- .|..|++.|+||.||+|...-.
T Consensus 268 ~~~~~~~~l~v~~vs~~~~H~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 268 LAPDLMTDLPVEKVSELDDHNGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred cCCCCccccceEEeeeccCCCCceE--EEEEee-eeeEEeecCCCceeeehhhhhh
Confidence 111111111111133477899 999998 7999999999999999998644
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3e-23 Score=218.79 Aligned_cols=229 Identities=14% Similarity=0.215 Sum_probs=202.3
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
.|...|.|+..- ++.+++|+ |..+.+|.+.....+..+.+|..+|.++.|+++. +|++|+.+|+|++||+..++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 388888888766 88899999 8899999998888888899999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecC
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 598 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg 598 (730)
+++.+|...+.++.|+|-+.+.++|+.|+.+++||++. ..+.. ...+|. ..|..+.|+|+|++++.+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCcee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence 99999999999999999999999999999999999985 13444 556677 688999999999999995 779
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEE
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 678 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 678 (730)
.++|||+..|+.+..|.. |.+.+.++.|+|..-++++|+.|++|++||+++-+.+...... ...|. +.
T Consensus 177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~--~~ 244 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVR--SL 244 (825)
T ss_pred eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCce--ee
Confidence 999999999999999964 6899999999999999999999999999999988777665421 33477 99
Q ss_pred EEecCCCCEEEEEeCC
Q 004789 679 AAHPLEPNRIALGLTN 694 (730)
Q Consensus 679 ~~sp~~~~~las~s~D 694 (730)
+|+| ++..+++|..+
T Consensus 245 ~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 245 AFNP-DGKIVLSGEQI 259 (825)
T ss_pred eecC-CceeeecCchh
Confidence 9999 88888887654
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.5e-21 Score=205.74 Aligned_cols=267 Identities=15% Similarity=0.161 Sum_probs=210.0
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCC-CCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~-~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
....+.|+|++|.+++.||.|++|+.... .++..... |+..|.+++... .+|++|+.+++|.+|.+.++.
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------SGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------cCceeEEEeecc--cceEEeeccceEEEeeCCCCC
Confidence 34578999999999999999999998653 22322221 566777776654 489999999999999987765
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEE
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 491 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i 491 (730)
. .+ ++. ...-++++++|+ |+++|.|+ |-.|++.++.+......+.+|.++|.++
T Consensus 88 ~-----------------~~-iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 88 E-----------------DT-ILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred c-----------------cc-eee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 4 11 221 245789999999 88999999 8899999999999999999999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCC--------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h--------~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~ 562 (730)
.++|.+ +||+.+-||.|++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..+++...
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF 224 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe
Confidence 999999 9999999999999999999877766431 3456678999998888888999999999999976432
Q ss_pred ceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
.+. ...+. ..+..++|+|+|+|||++ .+|.|.|||..+... +.....|.+++|-|++.-+-.-...
T Consensus 225 --~Lr--~~~~s---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 225 --KLR--DKLSS---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred --eec--ccccc---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeec
Confidence 222 12222 348999999999999995 899999999987322 2237789999999988766655555
Q ss_pred CeEEEE
Q 004789 642 GHVKVF 647 (730)
Q Consensus 642 g~I~iw 647 (730)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 555444
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.7e-21 Score=192.80 Aligned_cols=286 Identities=16% Similarity=0.177 Sum_probs=214.8
Q ss_pred eecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEe--CCCcEEEeecCCCcccccccccccee
Q 004789 349 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMES 426 (730)
Q Consensus 349 t~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s--~dg~I~iWd~~~~~~~~~~~~~~~~~ 426 (730)
.++...+++|||+........+...+ -.-.|.++.|+.... |++++ .|..+++|.-....
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~------------ 68 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT------------ 68 (673)
T ss_pred eeccCCceEEeecccccCccccccCC-----CCCcceeeeccccce-EEEeecCCceeEEEecccCCC------------
Confidence 34555789999998654443433322 223399999998775 55544 47788888643221
Q ss_pred eEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE
Q 004789 427 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 502 (730)
Q Consensus 427 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg 502 (730)
+.+-..... ....-.|++.. ..|+++|+ .+.|+|||++...+.+.+++|...|+++.++..+ +||++
T Consensus 69 -------~~Vp~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 69 -------PEVPRVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred -------Cccceeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEe
Confidence 111000000 11233444444 67899999 9999999999877888899999999999999999 99999
Q ss_pred ECCCcEEEEecCCCceEEEEcCCC-CCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe
Q 004789 503 FDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 580 (730)
Q Consensus 503 s~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spd~~~-l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v 580 (730)
+..|.|.|..+.++.....|.... ..|.-+.|+|..+. |.+++.+|.|.+||+... .++......|. .+.
T Consensus 140 s~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~Hs---AP~ 211 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHS---APC 211 (673)
T ss_pred ccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----Ccccchhhhcc---CCc
Confidence 999999999999998877776443 44558899997765 567889999999999883 34444677787 788
Q ss_pred EEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEE
Q 004789 581 NHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQ 657 (730)
Q Consensus 581 ~~l~~spdg~~l~~--s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~ 657 (730)
..|+|+|.+..|++ |.|..|.+||++..+....+.. ..+...++|+++|.+|++|+..|.|+.||++.. .++.+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 99999997776665 6999999999988777666643 788999999999999999999999999999865 45555
Q ss_pred eecccccCCCCcccceeeEEEEEec
Q 004789 658 INLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 658 ~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
+. .| +..|. +++|-|
T Consensus 289 ~s-------ah-~~sVt--~vafq~ 303 (673)
T KOG4378|consen 289 RS-------AH-DASVT--RVAFQP 303 (673)
T ss_pred ee-------ec-cccee--EEEeee
Confidence 54 33 55578 888887
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=190.31 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=212.4
Q ss_pred CCCcEEEEEEecCCC--EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 380 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~--~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
|.++|++++|+|..+ .+|+|..-|.|-+||+.+.+.. .++..+- ..|+.+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------~d~v~~f----~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------KDGVYLF----TPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------cCceEEe----ccCCccccceEecCC
Confidence 799999999999665 7778888899999999643321 1111111 1599999999999
Q ss_pred -CcEEEEee-CCEEEEEEcCCceEEEEEc--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCce-EEEEcCCCCCe
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 529 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~~~~~~~--~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V 529 (730)
...+++.+ ||+|++-|++++.....+. .....+.++.|+.+. .++.|..=|...+||.+++.. ...+..|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 55677777 9999999998765433333 355567888898888 777777777999999998754 56667788899
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-
Q 004789 530 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP- 606 (730)
Q Consensus 530 ~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~- 606 (730)
++++++|-. .+|++++.|++.+|||++.-.......+. ...|. ..|.+..|||++-.|++ +.|+.|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--TLPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--ccccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 999999965 56899999999999999874333221233 34455 58999999997666777 799999999983
Q ss_pred ---CCceeeeecCC-CCCC--CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 607 ---TLNHTSQLVPD-KMDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 607 ---~~~~~~~~~~~-~h~~--~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
...+..++.-. .+.. ......|.|+..++++|-.-..|-|+|-..++.+..+- +.....|.+ ...|
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~-------~P~~~tI~~-vn~~ 472 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH-------DPESSTIPS-VNEF 472 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc-------Ccccccccc-ceee
Confidence 33333333211 1112 23457899999999999999999999999998777753 111222331 4589
Q ss_pred ecCCCC-EEEEEeCCCcEEEEeCCC
Q 004789 681 HPLEPN-RIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 681 sp~~~~-~las~s~Dg~I~iWd~~~ 704 (730)
|| -+. +++.++..|.|+||.-..
T Consensus 473 HP-~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 473 HP-MRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cc-cccceeccCCccceEEEEecCC
Confidence 99 455 555556778999987543
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.2e-22 Score=212.24 Aligned_cols=251 Identities=18% Similarity=0.192 Sum_probs=210.9
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
..++....+-.+++|+... .. .|...|.++..-..++.+++|+.|..+-+|.+.....
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~-------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--------- 62 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FV-------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--------- 62 (825)
T ss_pred cccceeeeeeccccccchh------hh-------hhhhhhceeeeeccceeeccCCCceeeccccccCCch---------
Confidence 3444555667788888752 11 2889999999988889999999999999997654322
Q ss_pred eeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE
Q 004789 425 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 500 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~ 500 (730)
..+ ..+|..+|.++.|+ ..+|++|+ +|+|++||+++++.++++.+|...+.++.|+|-+ +++
T Consensus 63 ------i~S--------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 63 ------ITS--------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred ------hhe--------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEec
Confidence 110 11799999999999 55666777 8999999999999999999999999999999999 999
Q ss_pred EEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe
Q 004789 501 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 580 (730)
Q Consensus 501 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v 580 (730)
.|+.|+.+++||.+...|.+.+.+|...|..+.|+|+|+++++|+.|.++++||+..|+. +. -+.+|+ +.+
T Consensus 129 ~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-----~~-ef~~~e---~~v 199 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-----SK-EFKSHE---GKV 199 (825)
T ss_pred cccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc-----cc-cccccc---ccc
Confidence 999999999999998889999999999999999999999999999999999999988542 33 456677 789
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 004789 581 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 642 (730)
Q Consensus 581 ~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg 642 (730)
..+.|+|..-.++. |.|+++++||+++.+.+..... ....|.+..|+|++..+++|....
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCceeeecCchhh
Confidence 99999998877777 5999999999998888776654 378899999999999999987654
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.1e-20 Score=193.39 Aligned_cols=279 Identities=14% Similarity=0.193 Sum_probs=205.2
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
||++.|.++...|.|.+|++|+.||+|+||.+.++.++.. .. ..+.|.|++|+ +
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~---------------------~~---~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT---------------------VQ---FDSEIRSVAWNPLS 453 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE---------------------Ee---ecceeEEEEecCCC
Confidence 5999999999999999999999999999999888876332 11 33456666666 1
Q ss_pred --cEEEEeeC---------------------------------CEEEEEEcCCc----eEEEEEcCCCCCeEEEEEcCCC
Q 004789 457 --SHLFSASG---------------------------------GKISIFSLETF----QTLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 457 --~~l~s~sd---------------------------------g~I~vwd~~t~----~~~~~~~~~~~~v~~i~~spdg 497 (730)
..||++.+ +.+..|.-... .-++..-.|...|..+.|+..|
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 12333323 23344433210 0123334678899999999999
Q ss_pred -eEEEEECCC---cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 498 -LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 498 -~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
+|++...++ .|.|+++.......-|....+.|.++.|+|...+|++++ ...|++||+...+ .+.....+.
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe-----lvKkL~tg~ 607 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE-----LVKKLLTGS 607 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-----HHHHHhcCC
Confidence 998876654 799999987776666766778899999999998888877 4689999998733 233233443
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC-
Q 004789 574 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS- 650 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~- 650 (730)
..|..++.+|.|..|++ +.|+.+..||+.-. ++.+++. .|...+++++|++.-.++++|+.||++.||.-.
T Consensus 608 ----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 608 ----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred ----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 47999999999988888 58999999998744 4555554 468999999999999999999999999998632
Q ss_pred -Cc----e---EEEEeecccccCCCCccc-ceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 651 -TL----E---LRCQINLTAYAQPGTISL-ELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 651 -~~----~---~~~~~~~~~~~~~gh~~~-~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
+. - +++.+. ||... .+-++.+.||| ...+|.+++.||+|++|.
T Consensus 682 Y~Dl~qnpliVPlK~L~-------gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLR-------GHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ehhhhcCCceEeeeecc-------CceeecccceEeecccC-CCceEEecCCCceEEeeC
Confidence 11 1 123333 55321 12245888999 788999999999999983
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=4.6e-20 Score=177.97 Aligned_cols=277 Identities=15% Similarity=0.172 Sum_probs=197.0
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc-cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-------
Q 004789 384 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------- 455 (730)
Q Consensus 384 V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s------- 455 (730)
...+.|||||..|++-+.|..+.+|++........ ..... .. ....++ + .....|...+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~-----~~--~~~~~r-~---~eg~tvydy~wYs~M~s~q 120 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN-----FS--KHLSYR-Y---QEGETVYDYCWYSRMKSDQ 120 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc-----cc--cceeEE-e---ccCCEEEEEEeeeccccCC
Confidence 44689999999999999999999999876543211 00000 00 000000 0 134556665554
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEEEEEcC--CCC---CeEEEEEcCCC-eEEEEECCCcEEEEec-CCCceEEE---E
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTLATFAN--PPP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTKAK---L 522 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~~~~~~--~~~---~v~~i~~spdg-~l~sgs~dg~I~iwd~-~~~~~~~~---~ 522 (730)
.+++++.+ +.-|++||.-+|+....+.+ |.. +..+++|+||| .|++|. ...|+++|+ +.|..-.. +
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 45677777 99999999999999888864 322 44699999999 877765 569999998 55532211 1
Q ss_pred ----cCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--
Q 004789 523 ----KGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 595 (730)
Q Consensus 523 ----~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-- 595 (730)
.+..+-|.+++|+|.. ..+++|+...++-||.-.. ..+++ +..+|. +.|+.++|.++|+.|++|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----~~pl~-llggh~---gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----RRPLQ-LLGGHG---GGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----CCcee-eecccC---CCeeeEEeccCcCeeccccc
Confidence 2346788999999955 5899999888888887766 25666 667888 899999999999999995
Q ss_pred ecCcEEEEeCCCCc-eeeeecCCCCCC-CeEEEEE--ecCCCEEEEEEcCCeEEEEECCC-ceEEEEeecccccCCCCcc
Q 004789 596 HEGQIDVYEAPTLN-HTSQLVPDKMDL-PITYATY--SCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 596 ~dg~I~iwd~~~~~-~~~~~~~~~h~~-~v~~~~~--spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~ 670 (730)
.+..|..||++..+ ++..+. .|.. .-..|-| .|+|++|++|+.||.|++||+++ |..+..+. .++
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~--rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~s 340 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALE--RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYS 340 (406)
T ss_pred CCCeEEEEeehhccchhhhhh--hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------ccc
Confidence 68889999998644 333333 2322 3334444 58999999999999999999998 65444443 236
Q ss_pred cceeeEEEEEecCCCCEEEEEeCC
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTN 694 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~D 694 (730)
..++ .|+++| --.++|+++..
T Consensus 341 d~vN--gvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVN--GVSLNP-IMPILATSSGQ 361 (406)
T ss_pred cccc--ceecCc-ccceeeeccCc
Confidence 6688 999999 56788887643
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=174.70 Aligned_cols=278 Identities=10% Similarity=0.014 Sum_probs=203.7
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
.+..|++.|.+||+|..||.|.|||+...+....+ .+|..+|.+++||+||+.|+++|.|..|.+||+..+..
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-------saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-------SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhh-------hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence 34689999999999999999999999743321111 35999999999999999999999999999999877654
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCC----CCC
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP----PPI 487 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~----~~~ 487 (730)
. +.. ...++|+...|+ .+..++.- +..-.+.++..+....--... ...
T Consensus 100 l---------------------~ri---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 100 L---------------------KRI---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred e---------------------eEE---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccc
Confidence 1 111 156788888888 33333333 554555555442221111111 112
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-------
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGW------- 558 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~------- 558 (730)
..+..|.+.| ++++|...|.+.++|..+-+++..++-.. ..|..+.++..|+.++.-+.|+.|+.|+++.-
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccC
Confidence 2344688899 99999999999999999999998887655 77899999999999999999999999998731
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
+......++.+.. . ..-.+++|+.+|.|++++ ....++||.-..|..++.+.+.. +.....+.|+|-...++
T Consensus 236 e~e~~~K~qDvVN-k----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp~rp~i~ 309 (405)
T KOG1273|consen 236 EVEPEHKLQDVVN-K----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHPVRPIIA 309 (405)
T ss_pred CcChhHHHHHHHh-h----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeecccccceeeee
Confidence 1110111111111 1 234579999999999984 56779999999999999886532 46788999999888888
Q ss_pred EEEcCCeEEEEECCC
Q 004789 637 VSCKSGHVKVFDTST 651 (730)
Q Consensus 637 sgs~dg~I~iwd~~~ 651 (730)
+- ..|.|++|....
T Consensus 310 si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 310 SI-ASGVVYIWAVVQ 323 (405)
T ss_pred ec-cCCceEEEEeec
Confidence 77 689999998654
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-19 Score=187.40 Aligned_cols=290 Identities=12% Similarity=0.108 Sum_probs=216.5
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC--EEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~--~L~s~s~dg~I~iWd~~~~~~ 415 (730)
.+..|.|..||+|+.||+||||.+. ++.|..... ..+.|.||+|+|.+. .||++-.+ .+.|-+-.-+..
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~----TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIA----TGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDR 476 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEee----cceEEEEEe----ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccch
Confidence 5778899999999999999999996 556654432 567999999999876 34444433 455555433311
Q ss_pred ccc---------c---ccccceeeEecCCCCee----EeecccCCCCCCeeEEEEe--CcEEEEee-C---CEEEEEEcC
Q 004789 416 SLE---------E---ENVNMESQLYQPSSKLV----MTNDIAADPKDSISCFALR--GSHLFSAS-G---GKISIFSLE 473 (730)
Q Consensus 416 ~~~---------~---~~~~~~~~i~~~~~~~~----~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d---g~I~vwd~~ 473 (730)
... . ......+..|...+..- +...+ .|...|..+.|+ |.||++.. + ..|.|.++.
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 110 0 11111335676542111 11222 589999999999 99999987 4 579999998
Q ss_pred CceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 004789 474 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 552 (730)
Q Consensus 474 t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~v 552 (730)
......-|....+.|.++.|+|.. +|++++. ..|++||+.....++.+......|.+++.+|.|..|+.|+.|+.+..
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence 887777777778889999999999 8877765 58999999988888887777788999999999999999999999999
Q ss_pred EEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC------CC---ceeeeecCCC--CC
Q 004789 553 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP------TL---NHTSQLVPDK--MD 620 (730)
Q Consensus 553 wd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~------~~---~~~~~~~~~~--h~ 620 (730)
+|+.-. .++.+ ....|. ..+++++|++.-..++++ .||++.|+.-. .. -+++.+.++. ..
T Consensus 634 fDldls----skPyk-~lr~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 634 FDLDLS----SKPYK-TLRLHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred EEcccC----cchhH-Hhhhhh---hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 999863 25555 556676 689999999999999996 67998887532 11 1234444321 13
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004789 621 LPITYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 621 ~~v~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
..|..+.|+|...+|++++.||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 458999999999999999999999998
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.1e-19 Score=188.77 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=103.3
Q ss_pred CCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 378 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
++|++.|+.+.|+| +...||+||.|..|+||.+..+.... + ...+..+ ++..-.|.|+.|+
T Consensus 76 ~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~----------L--Sape~~~-----g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK----------L--SAPEIDV-----GGGNVIVECLRFHP 138 (1012)
T ss_pred ecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc----------c--CCcceee-----cCCceEEEEeeccc
Confidence 35999999999999 44578999999999999987543211 1 0111111 1234567899999
Q ss_pred --CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCC
Q 004789 456 --GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGH 525 (730)
Q Consensus 456 --~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h 525 (730)
+..++++..|.+++||+.+++.+..+.+|...|.+..|+.|| .+++.+.|..|+|||.+.. +.++..++|
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 888999999999999999999999999999999999999999 9999999999999998753 444444433
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.4e-19 Score=179.09 Aligned_cols=233 Identities=14% Similarity=0.131 Sum_probs=179.8
Q ss_pred CcEEEEee-CCEEEEEEcCCceE---EE------------------EEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQT---LA------------------TFANPPPIATYFILLPQD--LFAFGFDDSSILVH 511 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~---~~------------------~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iw 511 (730)
|+|+|.|+ +..|.|||+.--.. .. ...+|+..|.+++|+..- .||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999 99999999853111 00 123688888899998777 99999999999999
Q ss_pred ecCCCceEEEEcCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 512 CPCTKKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 512 d~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
|+.++++..++..|...|.++.|+|. ...|++|+.|+++.+.|.+.... .....+ .. +.|-.++|.|...
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk--~~------g~VEkv~w~~~se 342 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK--FD------GEVEKVAWDPHSE 342 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE--ec------cceEEEEecCCCc
Confidence 99999999999999999999999994 57899999999999999995211 112222 11 5799999999765
Q ss_pred EEEE-E-ecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEeecccccCC
Q 004789 591 HLLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 666 (730)
Q Consensus 591 ~l~~-s-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 666 (730)
..+. + .||+++-+|+|+. +++.++. .|..+|.++++++. ..++++++.|+.|++|++.......+.... +.
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-~~-- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-FK-- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEE--eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-cc--
Confidence 5444 4 8999999999975 7777775 57999999999864 467889999999999998765443222110 00
Q ss_pred CCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 667 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 667 gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
-+... |+++.|...-++|.||..+.++|||+.+...
T Consensus 418 ---~~rl~--c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 418 ---LGRLH--CFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ---cccee--ecccCCCcceEEEecCccceEEEeecccChh
Confidence 11133 7788886667899999999999999987743
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-18 Score=173.51 Aligned_cols=300 Identities=15% Similarity=0.132 Sum_probs=213.5
Q ss_pred CCcEEEEEEecCCC-EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 381 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 381 ~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
..+|..+.|.+++. .|++|+.|..|++|.+..+..... ..++.....+..|...|+++.|+ |+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCcceeEEEEEcCCcC
Confidence 57899999999876 999999999999999876653110 01222222233799999999999 99
Q ss_pred EEEEee-CCEEEEEEcC--------C--------ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 458 HLFSAS-GGKISIFSLE--------T--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~--------t--------~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
.||+|+ +|.|.+|-.. + ....+.+.+|...|..++|+|++ .+++|+.|+.+++||+..|...
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 999999 7999999765 3 23455677899999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee-----ecccccCC--------CC-CCCCeEEEEE
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF-----LHSFQTGL--------VP-ETTIVNHIQF 585 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----i~~~~~~h--------~~-~~~~v~~l~~ 585 (730)
..+..|...|..++|.|-++++++-+.|...+.+.+.......... ......++ .. .......++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999999999999877777766532221111 00000000 00 0023345789
Q ss_pred ecCCcEEEE--E---ecCc-----EEEEeCCCC-ceeeeecCCCCCCCeEEEEEec------------------CCCEEE
Q 004789 586 HPDQIHLLS--I---HEGQ-----IDVYEAPTL-NHTSQLVPDKMDLPITYATYSC------------------DGKCIY 636 (730)
Q Consensus 586 spdg~~l~~--s---~dg~-----I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp------------------dg~~l~ 636 (730)
+|+|..+++ + .++. .++|+-... ++...+.. -..+...+.|+| -+..++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 999999987 2 2333 355553321 22222222 244444444443 222334
Q ss_pred EEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 637 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 637 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
.+ ..+.|+|||.++..+..... +-|-..++ .++|++ +|..++..|.||...+-.++..+.
T Consensus 317 iA-t~~svyvydtq~~~P~~~v~-------nihy~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 317 IA-TKNSVYVYDTQTLEPLAVVD-------NIHYSAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred Ee-ecceEEEeccccccceEEEe-------eeeeeeec--ceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 44 46779999999988887776 33344566 999999 899999999999988877766543
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.8e-19 Score=182.60 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=188.4
Q ss_pred CCCeeEEEEe-CcEEEEee---CCEEEEEEcCC--ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCce
Q 004789 446 KDSISCFALR-GSHLFSAS---GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 518 (730)
Q Consensus 446 ~~~V~~l~~s-~~~l~s~s---dg~I~vwd~~t--~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~ 518 (730)
...+.++.|+ .++|++++ |..+.+|.-.. ++....-......-.|++..... ++++|+..+.|+|||++...+
T Consensus 34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 3458999999 66677665 67788886432 22211111122244566666667 999999999999999998888
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--Ee
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IH 596 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s~ 596 (730)
.+.+++|...|+++.++....+||+++..|.|.+..+.++... .++. ...+ ..|.-+.|+|..+++++ +.
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~-~~sg-----qsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFT-IDSG-----QSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--ccee-cCCC-----CeEEEeecccccceeeEeecc
Confidence 8899999999999999999999999999999999999885421 2222 1122 35778999999998887 58
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
+|.|.+||+....++..+.. .|..+...+||+| +..+|++.+.|..|++||+...+....+.. ..+..
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---------~~Pls- 254 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---------SHPLS- 254 (673)
T ss_pred CCeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---------cCCcc-
Confidence 89999999987777777664 6899999999998 456888999999999999998777766653 34566
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.|+|.+ +|.+|+.|+..|.|..||++..+
T Consensus 255 -tvaf~~-~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 255 -TVAFSE-CGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred -eeeecC-CceEEEeecCCceEEEEecccCC
Confidence 999999 89999999999999999998653
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=180.88 Aligned_cols=252 Identities=11% Similarity=0.083 Sum_probs=180.9
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKIS 468 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~ 468 (730)
|+|+|.|+.|..|.|||+.-.....-.....-...-.....++ +.....+|+..|..++|+ .+.||+|+ |.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 6799999999999999986433211100000000000000000 111122699999999999 78899999 99999
Q ss_pred EEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCce-EEEEcCCCCCeEEEEEeCCC-CEEEEE
Q 004789 469 IFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL-NVLVSS 544 (730)
Q Consensus 469 vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~spd~-~~l~s~ 544 (730)
+||+.+|++..++..|.+.|.++.|+|.. .|++|+.|++|.+.|.+.... -..++ ..+.|-.++|.|.. ..++++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEe
Confidence 99999999999999999999999999988 999999999999999985322 22333 45789999999965 457778
Q ss_pred eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCC
Q 004789 545 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLP 622 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s~dg~I~iwd~~~~~~~~~~~~~~h~~~ 622 (730)
+.||+++-+|+|... .++. ....|. ++|.++++++....+++ +.|+.+++|++............-.-+.
T Consensus 349 tddG~v~~~D~R~~~----~~vw-t~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPG----KPVW-TLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred cCCceEEeeecCCCC----Ccee-EEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence 899999999999842 5555 566787 79999999997666555 5899999999875443211110001233
Q ss_pred eEEEEEecCC-CEEEEEEcCCeEEEEECCCceEE
Q 004789 623 ITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 623 v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
..|+++.|+- -+++.|+..+.++|||+.+...+
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5566666755 45777888888999999887644
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.6e-18 Score=165.12 Aligned_cols=248 Identities=14% Similarity=0.174 Sum_probs=178.7
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec--CCCEEEEEeCCCcEEEeecCCCc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp--dg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
+..+.+-|+.+||++.|++|+|||......+-.|..-- ..|.+.|+.+.|.+ -|+.+|++|.|+++.||.-+...
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 46788889999999999999999975433333332111 13999999999976 58999999999999999754222
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCceEE------EEEc-
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTL------ATFA- 482 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~~~------~~~~- 482 (730)
... .-+-|. ...........|+.+.|. |-.+|+++ ||.++||+.-..-.+ ..+.
T Consensus 95 ~~~-------~~~~Wv-------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 95 EEA-------HGRRWV-------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred ccc-------ccceeE-------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 100 001122 111112577899999999 78899999 999999987543222 2222
Q ss_pred ------CCCCCeEEEEEcCCC----eEEEEECC-----CcEEEEecCCC----ceEEEEcCCCCCeEEEEEeCCC----C
Q 004789 483 ------NPPPIATYFILLPQD----LFAFGFDD-----SSILVHCPCTK----KTKAKLKGHQNRITCLAYSLSL----N 539 (730)
Q Consensus 483 ------~~~~~v~~i~~spdg----~l~sgs~d-----g~I~iwd~~~~----~~~~~~~~h~~~V~~l~~spd~----~ 539 (730)
.+.....|+.|+|.. .||+|+.+ +.++||....+ ..+.++.+|+.+|++++|.|+- .
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 355577899999876 78888766 47888876544 3455677899999999999953 4
Q ss_pred EEEEEeCCCcEEEEEcCCCc------------eecceeecc--cccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEe
Q 004789 540 VLVSSGADAQLCVWDAVGWK------------KLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 604 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~------------~~~~~~i~~--~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd 604 (730)
.||+++.|| |+||.+.... .....++.. ...+|. +.|..+.|+-.|..|++ |.||.+++|.
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~---~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN---GEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC---CceEEEEEeeeeeEEeecCCCceeeehh
Confidence 689999999 9999997411 011111211 345777 79999999999999998 7999999997
Q ss_pred C
Q 004789 605 A 605 (730)
Q Consensus 605 ~ 605 (730)
.
T Consensus 317 a 317 (361)
T KOG2445|consen 317 A 317 (361)
T ss_pred h
Confidence 5
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=3.9e-19 Score=185.64 Aligned_cols=281 Identities=13% Similarity=0.105 Sum_probs=198.3
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCC-cceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 421 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~-~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~ 421 (730)
....||.+..||.|.++|....... ++++-... ..|.+.|..+.|-|....|++++.|.++++||++.......
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~--~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~--- 137 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKP--LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG--- 137 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhccc--ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc---
Confidence 4678999999999999999754322 22211111 23999999999999666899999999999999988765111
Q ss_pred ccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce---------------------
Q 004789 422 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------------------- 476 (730)
Q Consensus 422 ~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~--------------------- 476 (730)
.+ .+ +|...|.+++|. ...|++|+ ||.|.|||+.-..
T Consensus 138 -------------~~---~~--GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 138 -------------RL---NL--GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred -------------ee---ec--ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 01 11 799999999999 66788899 9999999985321
Q ss_pred ------EEEEEcCCCCCeEE---EEEcCCC-eEEEEEC-CCcEEEEecCCCceEEEE--------cCC---CCCeEEEEE
Q 004789 477 ------TLATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKL--------KGH---QNRITCLAY 534 (730)
Q Consensus 477 ------~~~~~~~~~~~v~~---i~~spdg-~l~sgs~-dg~I~iwd~~~~~~~~~~--------~~h---~~~V~~l~~ 534 (730)
.+.....+...|.+ +.+..|. .||+++. |+.|+|||++........ ..| ...+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 01112234444544 5555677 8888887 999999999876433221 222 335677777
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~ 613 (730)
...|.+|.+.+.|+.|++||+.+-.. .++. ...++.. ...-..-..+||+.+++++ .|...++|.+.+.+.--.
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~---sP~~-~~sg~~~-~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSI---SPVA-EFSGKLN-SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCc---Cchh-hccCccc-ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 77889988888899999999988332 2222 2233321 0111234568999999995 999999999987665434
Q ss_pred ecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCc
Q 004789 614 LVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~ 652 (730)
+.. +|...|++++|.|.. .-++++++|..++||++..+
T Consensus 355 ~l~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLL-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 333 579999999998632 34666699999999999765
No 156
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.8e-18 Score=156.97 Aligned_cols=287 Identities=14% Similarity=0.170 Sum_probs=203.4
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEE
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 461 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s 461 (730)
..|.+-+++|.+++|++|+.+|.|.+..+.+-..... .+.....+-.. .+|.++|+.++|.+.+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~~iv~e--qahdgpiy~~~f~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKLKIVPE--QAHDGPIYYLAFHDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCcceeec--cccCCCeeeeeeehhheee
Confidence 3466678999999999999999999998865432100 01111111111 2699999999999999999
Q ss_pred eeCCEEEEEEcCCceE------EEE--EcC-----CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCC
Q 004789 462 ASGGKISIFSLETFQT------LAT--FAN-----PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 462 ~sdg~I~vwd~~t~~~------~~~--~~~-----~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 527 (730)
|+||.|+-|..+.... +.. ..- .-..|+++...|.. .++.++.|+.++-||+++|+..+++++|++
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999999998754322 111 111 23468999999988 666777899999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecc---cccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 004789 528 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 604 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~---~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd 604 (730)
.|.+++-......+++|+.||++++||.++++.......+. ....|.. ..|.+++. +..++++|....+.+|+
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g--~wigala~--~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG--KWIGALAV--NEDWLVCGGGPKLSLWH 233 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC--ceeEEEec--cCceEEecCCCceeEEe
Confidence 99999986666689999999999999999975443221110 1112221 34555555 46689988888999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC
Q 004789 605 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 684 (730)
Q Consensus 605 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~ 684 (730)
++..++...+.. ..++..+.|.. +.++++++.+.|.-|.+. |.+...+.. +++. .+ ...|+-.-
T Consensus 234 Lrsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~s~~--c~--s~s~~~~p 297 (325)
T KOG0649|consen 234 LRSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPV------ESTA--CY--SASWQTSP 297 (325)
T ss_pred ccCCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccC------Cccc--ee--eecccCCc
Confidence 999999888865 67788888864 478888888899999875 443333321 3322 34 55555422
Q ss_pred CCEEEEEeCCCcEEEEe
Q 004789 685 PNRIALGLTNGRVHVIE 701 (730)
Q Consensus 685 ~~~las~s~Dg~I~iWd 701 (730)
-+++-.++..+.+.|+.
T Consensus 298 ~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHILK 314 (325)
T ss_pred eEEEEecccceeeeeee
Confidence 45666777778887764
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6e-20 Score=204.16 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=214.6
Q ss_pred cccCCCCCCC-eeEee----------cCCCcEEEEeecCCCCCc---ceeeeecCCCCCCCcEEEEEEecCCCE----EE
Q 004789 336 RESTSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDF----LV 397 (730)
Q Consensus 336 ~~~~~spdg~-~lat~----------~~dg~i~lWd~~~~~~~~---~~~~~~l~~~gh~~~V~~v~fspdg~~----L~ 397 (730)
...+.||++. ++|+| +.+.++.||.++...... .+..+. -..+-+.++|.+.|.. ||
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-----s~~rF~kL~W~~~g~~~~GlIa 84 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-----SSNRFNKLAWGSYGSHSHGLIA 84 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-----ccccceeeeecccCCCccceee
Confidence 3456777775 44443 445677888876433332 222222 4567889999998876 78
Q ss_pred EEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcC
Q 004789 398 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE 473 (730)
Q Consensus 398 s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~ 473 (730)
.|..||.|.+||....... .....+.. ...|.+.|..+.|+ +++||+|+ ||.|.|||+.
T Consensus 85 GG~edG~I~ly~p~~~~~~---------------~~~~~la~--~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIAN---------------ASEEVLAT--KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred ccccCCceEEecchhhccC---------------cchHHHhh--hcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 8888999999997653110 00001111 12699999999999 77999999 9999999998
Q ss_pred CceEEEEEc--CCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCC--CeEEEEEeCCC-CEEEEEeC
Q 004789 474 TFQTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSL-NVLVSSGA 546 (730)
Q Consensus 474 t~~~~~~~~--~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~spd~-~~l~s~s~ 546 (730)
..+.-.++. .....|.+++|+..- .|++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|++ ..|++++.
T Consensus 148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 755444432 245689999999877 889999999999999999887777765544 47789999987 45666666
Q ss_pred CC---cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 004789 547 DA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 621 (730)
Q Consensus 547 dg---~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~ 621 (730)
|. .|.+||++.. ..+++ +..+|. ..|.++.|++.+ +++++ +.|+.|.+|+..+++.+..+.. ...
T Consensus 228 dd~~PviqlWDlR~a----ssP~k-~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~n 297 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFA----SSPLK-ILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGN 297 (1049)
T ss_pred CCCCceeEeeccccc----CCchh-hhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCc
Confidence 53 5999999873 35666 568888 799999999965 67777 5999999999999999998875 378
Q ss_pred CeEEEEEecCC-CEEEEEEcCCeEEEEECCCce
Q 004789 622 PITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 622 ~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~ 653 (730)
++..+.|+|.. ..+++++-||.|.||.+.++.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999865 488899999999999988654
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=9e-19 Score=172.40 Aligned_cols=244 Identities=18% Similarity=0.236 Sum_probs=183.0
Q ss_pred CCCCCeeEEEEe--CcEEEEe--e-CCEEEEEEcCC----------------ceEEEEEcCCCCCeEEEEEcCCC--eEE
Q 004789 444 DPKDSISCFALR--GSHLFSA--S-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA 500 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~--s-dg~I~vwd~~t----------------~~~~~~~~~~~~~v~~i~~spdg--~l~ 500 (730)
.|.+.++.+.-+ ++-.+++ + .|.|+||++.. .+++.++.+|...=..++|||-- .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 466777777666 4443344 4 69999999752 35677888999888999999955 789
Q ss_pred EEECCCcEEEEecCCCce---EEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 501 FGFDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 501 sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
+|.--+.|++|...+|.- ...+.+|+..|-.++|+|.. ..+++||.||+|+|||++.+.... .+. .+.|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~--~kAh~-- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVS--TKAHN-- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeE--eeccC--
Confidence 998888999999988742 23466799999999999954 578899999999999999964322 222 36676
Q ss_pred CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---CceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCC
Q 004789 577 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~---~~~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~ 651 (730)
+.|+.|.|+.+-.+|++| .||+++|||+++ ++++..|. .|..+|+++.|+|. ...|++++.|.+|.+||+..
T Consensus 303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 789999999988888885 889999999986 45666775 47999999999985 46788889999999999853
Q ss_pred ceE-----------EEEeec-ccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 652 LEL-----------RCQINL-TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 652 ~~~-----------~~~~~~-~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
-.- +..+.+ .-|+-.| ...+. .+.||++.+.++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEE
Confidence 211 011111 1111113 34466 8999998888999999887 44554
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=172.95 Aligned_cols=254 Identities=15% Similarity=0.198 Sum_probs=181.5
Q ss_pred CCCCcEEEEEEecCCC--EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 379 SFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~--~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
+|.+.|+.+.-++-|+ +.|+-+..|.|.||++...-........ .+-+ ......+...+|...=+.++||
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~----~~~~---s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGL----EVKD---SEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccc----cccc---cccCceEEecccCccceeeeccc
Confidence 3888888888888654 5566677899999998654332110000 0000 1111111222688888999999
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEE---EEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC---ceEEEEcC
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK---KTKAKLKG 524 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~---~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~---~~~~~~~~ 524 (730)
...|++|. -+.|++|...+|... ..+.+|...|-.++|||.. .|++|+-||+|+|||++.+ .++.+ +.
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 55688888 799999999987654 3456899999999999988 9999999999999999998 34443 77
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-cEEEE-EecCcEEE
Q 004789 525 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDV 602 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-~~l~~-s~dg~I~i 602 (730)
|.+.|+.|.|+.+-.+|++|+.||+++|||++..+. ..++. .++-|. .+|+++.|+|.. ..+++ |.|.+|.|
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~--~~pVA-~fk~Hk---~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS--GQPVA-TFKYHK---APITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccC--CCcce-eEEecc---CCeeEEEeccccCceEEeccCCCcEEE
Confidence 999999999999888999999999999999998432 35555 456677 799999999953 34444 69999999
Q ss_pred EeCCCCce-----------e-----eeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEE
Q 004789 603 YEAPTLNH-----------T-----SQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVF 647 (730)
Q Consensus 603 wd~~~~~~-----------~-----~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~iw 647 (730)
||+..-.- + +.+..+.....+..+.|+++ ..+|++.+.||. .||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 99863211 0 01111112556777888864 347777777773 444
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=181.31 Aligned_cols=264 Identities=14% Similarity=0.173 Sum_probs=204.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+-|||..|+.+.. ..+.+||.++ ++..+++. ||++.|+|++|+.||+.+|+|+.|..|.+|+-+-...
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~nd---G~llqtLK----gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-- 87 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSD---GTLLQPLK----GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-- 87 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCC---cccccccc----cccceEEEEEEccCCceeccCCCceeEEEecccccce--
Confidence 789999998887644 6788999974 55555554 6999999999999999999999999999997543322
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
+.. .|...|.|+.|+ ...|++++=...-+|..+.....+ . .....+.+++|..
T Consensus 88 ------------------LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 88 ------------------LKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICCSWTN 142 (1081)
T ss_pred ------------------eee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEeeecC
Confidence 111 599999999999 888999996667788876432221 1 1245678999999
Q ss_pred CC-eEEEEECCCcEEEEecCCCceEEEEc---CCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~spd~-----~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
|| +++.|-.+|+|.+-+-. ++....+. |...+|++++|+|.. ..+++.....++.+|.+......+.+.+
T Consensus 143 DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L 221 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL 221 (1081)
T ss_pred CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC
Confidence 99 99999999999998744 44433343 367899999999953 4688888889999998876221111222
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 645 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~ 645 (730)
. -...|+.+.++|.+++. |.|+.+.+|.. .|-.+.++- ....+|+.++..|++++++.|+.||+|.
T Consensus 222 ~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 222 N----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred C----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc--ccceeEEEEEEccCCceEEEEEccCeee
Confidence 2 24568999999999999 59999999975 566666653 3588999999999999999999999999
Q ss_pred EEECC
Q 004789 646 VFDTS 650 (730)
Q Consensus 646 iwd~~ 650 (730)
.|++.
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 99874
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=5.2e-18 Score=168.82 Aligned_cols=294 Identities=15% Similarity=0.149 Sum_probs=202.5
Q ss_pred eeEeecCCCcEEEEeecCCCCCcceeeeec--CCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccc
Q 004789 346 SAVCAKSLEKSVNLKLQLINEPSECRTLLL--PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 423 (730)
Q Consensus 346 ~lat~~~dg~i~lWd~~~~~~~~~~~~~~l--~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~ 423 (730)
.+|||+.|..|+||.+......+....+.+ .-..|...|+++.|+|+|+.||+|+.+|.|.+|...............
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 999999999999999975443332111111 114599999999999999999999999999999876321100000000
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eE
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 499 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l 499 (730)
.....| .+. ....+|...|..++|+ +.++++++ |+.+++||+..|.....+..|...+..++|.|-+ ++
T Consensus 108 ~~ke~w------~v~-k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 108 LNKEKW------VVK-KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred hCccce------EEE-EEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence 000111 111 1222699999999999 88999999 9999999999999999999999999999999999 99
Q ss_pred EEEECCCcEEEEecCCCceEEEEc--------C-----------C----CCCeEEEEEeCCCCEEEEEeC----CCcE--
Q 004789 500 AFGFDDSSILVHCPCTKKTKAKLK--------G-----------H----QNRITCLAYSLSLNVLVSSGA----DAQL-- 550 (730)
Q Consensus 500 ~sgs~dg~I~iwd~~~~~~~~~~~--------~-----------h----~~~V~~l~~spd~~~l~s~s~----dg~I-- 550 (730)
++-+.|...+.+.+...+.++... + | ......++|+|||..+++.+. ++.+
T Consensus 181 ~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~ 260 (434)
T KOG1009|consen 181 ASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFR 260 (434)
T ss_pred hhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceee
Confidence 999988877777665433222111 0 1 122345789999999887542 2222
Q ss_pred ---EEEEcCCCceecceeecccccCCCCCCCCeEEEEEec------------------CCcEEEEEecCcEEEEeCCCCc
Q 004789 551 ---CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------------------DQIHLLSIHEGQIDVYEAPTLN 609 (730)
Q Consensus 551 ---~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp------------------dg~~l~~s~dg~I~iwd~~~~~ 609 (730)
++|+-.. . .+++-.++... .++..+.|+| -+-.++++..+.+++||.++..
T Consensus 261 n~tYvfsrk~---l-~rP~~~lp~~~----k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 261 NTSYVFSRKD---L-KRPAARLPSPK----KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred ceeEeecccc---c-cCceeecCCCC----cceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 3333221 1 12222121111 2444555554 1223444788899999999888
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
++..... -|-..++.++|++||.+|+..+.||...+-.+...++-
T Consensus 333 P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 333 PLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 8776654 46889999999999999999999999988888776654
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=164.86 Aligned_cols=308 Identities=11% Similarity=0.046 Sum_probs=213.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|+++.||.+|++|++|+.|..+++|+++..-. .++.+.++..- ..|...|.|++|. .
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------~k~~KPI~~~~-~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------RKTPKPIGVME-HPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------hcCCCCceecc-CccccceEEEEEccCC
Confidence 5999999999999999999999999999999864322 11222222211 1477899999999 6
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCC--CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCc-eEE--EEcCCCCCe
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKA--KLKGHQNRI 529 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~--~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~-~~~--~~~~h~~~V 529 (730)
.++++|. +++|...|+++.+.+..+... .+.|..+..+|.. .|++.+.++.|.+||.+... .+. .........
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 6788888 999999999999988887632 4589999999999 99999999999999998764 221 222244566
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeec--ccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeC
Q 004789 530 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 605 (730)
Q Consensus 530 ~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~--~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~ 605 (730)
.++.|+|.. .+|++.+..+-+.+||++... .++. ....+-......-..+.|+|+|..+++- ....-.+||+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~----~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQA----RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeecccc----chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 788999965 677888888999999998732 1111 0111111000233678999999999884 4445567888
Q ss_pred CCCceeeeecCCC------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE------EE----------Eeecccc
Q 004789 606 PTLNHTSQLVPDK------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL------RC----------QINLTAY 663 (730)
Q Consensus 606 ~~~~~~~~~~~~~------h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~------~~----------~~~~~~~ 663 (730)
-+.++. .+...+ ....+.+++|..| ..+++|+.+-.|++|.+..... +. .+.....
T Consensus 274 ~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccce-eEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 664443 332221 1235667888655 4499999999999998753110 00 1111122
Q ss_pred cCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 664 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 664 ~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
+..|| ..-++ .|.|+| ...+|++.+-.+.++||..... -|...-+
T Consensus 352 VLrGH-RSv~N--QVRF~~-H~~~l~SSGVE~~~KlWS~~r~--P~~~D~~ 396 (609)
T KOG4227|consen 352 VLRGH-RSVPN--QVRFSQ-HNNLLVSSGVENSFKLWSDHRL--PWSYDLP 396 (609)
T ss_pred EEecc-ccccc--ceeecC-CcceEeccchhhheeccccccC--CcccCCc
Confidence 34477 44466 999999 7789999999999999987532 2544433
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=7.3e-18 Score=170.00 Aligned_cols=249 Identities=14% Similarity=0.141 Sum_probs=190.3
Q ss_pred CCCCCeeEEEEe---C-cEEEEee-CCEEEEEEcCC----ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEe
Q 004789 444 DPKDSISCFALR---G-SHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC 512 (730)
Q Consensus 444 ~h~~~V~~l~~s---~-~~l~s~s-dg~I~vwd~~t----~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd 512 (730)
-+..+|++++|+ . +.+++|. .|+|-+||+.+ ..-+..+..|..+|+++.|+|.+ .+++.+.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 378999999999 4 5677777 79999999953 23456677899999999999999 999999999999999
Q ss_pred cCCCce--EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 513 PCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 513 ~~~~~~--~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
++.+.. +..+......+.++.|+.+...++.+..=|...+||++++.. ... ...-|. ..|.+++++|-..
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s----~~~-~~~lh~---kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS----EYE-NLRLHK---KKITSVALNPVCP 335 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc----cch-hhhhhh---cccceeecCCCCc
Confidence 987643 233333445667888888887888888778999999998532 112 233444 4799999999665
Q ss_pred EE-EE-EecCcEEEEeCCCCceeee--ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC----CceEEEEeeccc
Q 004789 591 HL-LS-IHEGQIDVYEAPTLNHTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS----TLELRCQINLTA 662 (730)
Q Consensus 591 ~l-~~-s~dg~I~iwd~~~~~~~~~--~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~----~~~~~~~~~~~~ 662 (730)
++ ++ |.|++.+|||++....... +..-.|...|.++.|||.|-.|++.+.|..|+|||.. ...+...+...
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn- 414 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN- 414 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc-
Confidence 54 55 5899999999987544332 4344689999999999998889999999999999983 33334444311
Q ss_pred ccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 663 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 663 ~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
..+...+..+..+|.| +..++++|-.-..|-|+|...++
T Consensus 415 ----~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 415 ----NRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ----CcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCE
Confidence 1112345567889999 88999999999999999998886
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=3.4e-17 Score=158.26 Aligned_cols=275 Identities=16% Similarity=0.146 Sum_probs=202.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCC---------CcceeeeecCCCCCCCcEEEEEEe-------cCCCEEEEEeC
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINE---------PSECRTLLLPDNSFGGRVVRLIYS-------HSGDFLVALTQ 401 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~---------~~~~~~~~l~~~gh~~~V~~v~fs-------pdg~~L~s~s~ 401 (730)
...||||..|.+-+.|..+++|++...-- ......+.++ ....|...+|- |+..++|+.+.
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeeccccCCCccceeeeccc
Confidence 57899999999999999999999853210 1111122221 35678888875 67789999999
Q ss_pred CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEc-CCceEE
Q 004789 402 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSL-ETFQTL 478 (730)
Q Consensus 402 dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~-~t~~~~ 478 (730)
+.-|++||.-+++.... -+.+|.. ..-.+..+++|+ |.+|++|-...|+++|+ +.|...
T Consensus 132 ~~PIh~wdaftG~lraS-------y~~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRAS-------YRAYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred cCceeeeeccccccccc-------hhhhhhH-----------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC
Confidence 99999999888776221 1222211 011234689999 99999999999999999 555432
Q ss_pred EEEc-------CCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CC
Q 004789 479 ATFA-------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA 548 (730)
Q Consensus 479 ~~~~-------~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg 548 (730)
..+. +..+-|.|++|+|-. .+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+|.. |.
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDD 273 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCC
Confidence 2221 235678999999988 8999999999999998888999999999999999999999999999875 77
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYA 626 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~ 626 (730)
.|-.||++... .++. -+..|...++.-.-....|++++|++| .||.|++||+.+ +..+..+. .+...+..+
T Consensus 274 kIl~WDiR~~~----~pv~-~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--~~sd~vNgv 346 (406)
T KOG2919|consen 274 KILCWDIRYSR----DPVY-ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--NYSDTVNGV 346 (406)
T ss_pred eEEEEeehhcc----chhh-hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--cccccccce
Confidence 89999999732 3333 233443211222234557889999996 999999999987 55454543 358889999
Q ss_pred EEecCCCEEEEEEc
Q 004789 627 TYSCDGKCIYVSCK 640 (730)
Q Consensus 627 ~~spdg~~l~sgs~ 640 (730)
+++|--..+++++.
T Consensus 347 slnP~mpilatssG 360 (406)
T KOG2919|consen 347 SLNPIMPILATSSG 360 (406)
T ss_pred ecCcccceeeeccC
Confidence 99998777777654
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=8.2e-18 Score=175.77 Aligned_cols=272 Identities=14% Similarity=0.190 Sum_probs=203.0
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 460 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~ 460 (730)
.|..++|-|||..|+.+..+ .+.+||. ++|..+++.. +|...|+|++|+ |+.+|
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~---------------------ndG~llqtLK--gHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDT---------------------SDGTLLQPLK--GHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeC---------------------CCcccccccc--cccceEEEEEEccCCceec
Confidence 79999999999988877655 4666654 4444444333 899999999999 99999
Q ss_pred Eee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCC
Q 004789 461 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 538 (730)
Q Consensus 461 s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~ 538 (730)
+|+ |..|.+|..+-...+ .+ .|...|.|+.|+|-. .+++++-. ..-+|........ ..+ ...++.+++|..||
T Consensus 70 SG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDG 144 (1081)
T ss_pred cCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCC
Confidence 999 999999986532222 12 589999999999999 88888764 5678886644332 222 34678899999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-----cEEEE-EecCcEEEEeCCCCceee
Q 004789 539 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLS-IHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 539 ~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-----~~l~~-s~dg~I~iwd~~~~~~~~ 612 (730)
.+++.|-.+|+|.+-+-...+ ...++ .+.|.. .+|.+++|+|.. ..+++ -...++.+|.+ +|+.+.
T Consensus 145 qylalG~~nGTIsiRNk~gEe---k~~I~-Rpgg~N---spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Ig 216 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKNGEE---KVKIE-RPGGSN---SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIG 216 (1081)
T ss_pred cEEEEeccCceEEeecCCCCc---ceEEe-CCCCCC---CCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeec
Confidence 999999999999988655422 12333 334444 689999999953 34555 36677888877 466554
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.-+. -.....|+.+.++|.+++.|+.|+.+.+|..+ |-.+.++ |..+.+|| .|+.+| +++.++.|+
T Consensus 217 k~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv--------g~~D~WIW--tV~~~P-NsQ~v~~GC 282 (1081)
T KOG1538|consen 217 KDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV--------GEQDSWIW--TVQAKP-NSQYVVVGC 282 (1081)
T ss_pred cccc--CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec--------cccceeEE--EEEEcc-CCceEEEEE
Confidence 3221 14556788889999999999999999999865 4444444 43477888 999999 899999999
Q ss_pred CCCcEEEEeCCCC
Q 004789 693 TNGRVHVIEPLES 705 (730)
Q Consensus 693 ~Dg~I~iWd~~~~ 705 (730)
.||+|..|++...
T Consensus 283 qDGTiACyNl~fS 295 (1081)
T KOG1538|consen 283 QDGTIACYNLIFS 295 (1081)
T ss_pred ccCeeehhhhHHh
Confidence 9999999998543
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.6e-18 Score=191.26 Aligned_cols=240 Identities=16% Similarity=0.222 Sum_probs=183.5
Q ss_pred cCCCCCCCe----eEeecCCCcEEEEeecCCCCCcce-eeeecCCCCCCCcEEEEEEecCCC-EEEEEeCCCcEEEeecC
Q 004789 338 STSLPDADS----AVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQ 411 (730)
Q Consensus 338 ~~~spdg~~----lat~~~dg~i~lWd~~~~~~~~~~-~~~~l~~~gh~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~~ 411 (730)
....+.|.. ||.|..||.|.+||.......... .-.+. ..|++.|..+.|++.+. .||+|+.||.|.|||+.
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 445555554 888899999999999753111111 11111 23999999999999765 99999999999999998
Q ss_pred CCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCC-
Q 004789 412 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP- 486 (730)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~- 486 (730)
..+.-.. + + .....+.|.+++|+ ...|++++ +|.+.|||++..+.+-.+..+.+
T Consensus 148 n~~tP~~------------~--~-------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~ 206 (1049)
T KOG0307|consen 148 KPETPFT------------P--G-------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR 206 (1049)
T ss_pred CcCCCCC------------C--C-------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc
Confidence 7543111 0 0 00256789999999 77799999 89999999999888877776554
Q ss_pred -CeEEEEEcCCC--eEEEEECCC---cEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC
Q 004789 487 -IATYFILLPQD--LFAFGFDDS---SILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 487 -~v~~i~~spdg--~l~sgs~dg---~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~ 558 (730)
.+..++|+|++ .+++++.|. .|.+||++.- ..++.+++|...|.++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 57899999999 777777665 7999998754 6778889999999999999966 88999999999999999997
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCc
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN 609 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~-~l~~-s~dg~I~iwd~~~~~ 609 (730)
+.... +... . +.+..+.|+|... .+++ +-||.|.||.+....
T Consensus 287 Evl~~-----~p~~-~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGE-----LPAQ-G---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeee-----cCCC-C---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 64332 2222 1 5899999999766 4444 699999999987654
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=8.6e-18 Score=162.87 Aligned_cols=275 Identities=15% Similarity=0.143 Sum_probs=197.7
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC----CCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd----g~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
-+.+||+|. +.+.+|+.........++.+.- ..|...-..++|+-+ ..+||+||.-|.|+|.|+.+++.
T Consensus 55 ~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~---- 127 (385)
T KOG1034|consen 55 PQVFATVGG-NRVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC---- 127 (385)
T ss_pred CceEEEeCC-cEEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh----
Confidence 345566555 6777888764222222333322 237888899999854 34899999999999988877665
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEc---CCCCCeEEEE
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFI 492 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~---~~~~~v~~i~ 492 (730)
...+. +|...|+.+.+. .+++++++ |..|++|++++..++..+- +|.+.|.++.
T Consensus 128 -----------------~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 128 -----------------SKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred -----------------cccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 22222 799999999999 66999999 9999999999999998875 7999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEecCCCceEE----------------------------EEcCCCCCeEEEEEeCCCCEEEE
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPCTKKTKA----------------------------KLKGHQNRITCLAYSLSLNVLVS 543 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~~~~~~~----------------------------~~~~h~~~V~~l~~spd~~~l~s 543 (730)
|+++| +|++++.|.++++|++...+... +-.-|...|-|+.|- |+++++
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS 266 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS 266 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence 99999 99999999999999998432110 112366677777775 578999
Q ss_pred EeCCCcEEEEEcCC-Cce--------ecceeecccccCCCCCCCCeEEE--EEecCCcEEEEE-ecCcEEEEeCCCCcee
Q 004789 544 SGADAQLCVWDAVG-WKK--------LCSKFLHSFQTGLVPETTIVNHI--QFHPDQIHLLSI-HEGQIDVYEAPTLNHT 611 (730)
Q Consensus 544 ~s~dg~I~vwd~~~-~~~--------~~~~~i~~~~~~h~~~~~~v~~l--~~spdg~~l~~s-~dg~I~iwd~~~~~~~ 611 (730)
-+.++.|..|.... .+. .....+.++.-.. ..|+-+ +|.|-++.||.| ..|.|++||++..++.
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~----c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM----CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc----cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 89999999998732 111 0001111011110 244444 556668889886 8899999999877653
Q ss_pred --eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 612 --SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 612 --~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
.++........|...+||.||.+|+..++|+.|.-||.-
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 223222237789999999999999999999999999854
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.8e-15 Score=164.63 Aligned_cols=324 Identities=22% Similarity=0.309 Sum_probs=241.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEE-ecCCC-EEEEEeC-CCcEEEeecCC-C
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGD-FLVALTQ-TATHKLWKWQS-N 413 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~f-spdg~-~L~s~s~-dg~I~iWd~~~-~ 413 (730)
..+.+++..++.++.|+.+.+|+..... .....+.. .+...+..+.+ ++++. +++..+. |+.+.+|+... .
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEG---LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEec---cCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 4678899999999999999999997422 02222221 02247788888 88888 5555455 89999999875 2
Q ss_pred ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeE
Q 004789 414 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT 489 (730)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~ 489 (730)
.. ..... .|...|.+++|+ +.++++++ ++.+++|++.++..+..+.+|...|.
T Consensus 146 ~~---------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 146 KL---------------------IRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred eE---------------------EEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence 11 11111 589999999999 66777776 89999999999999999999999999
Q ss_pred EEEEcCCC-eEEEE-ECCCcEEEEecCCCceEE-EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 490 YFILLPQD-LFAFG-FDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 490 ~i~~spdg-~l~sg-s~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
+++|+|++ .++++ +.|+.|++||...+..+. .+.+|...+ ...|+|++..+++++.|+.+++||+..... .+
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~ 277 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LL 277 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EE
Confidence 99999999 45554 999999999998888887 688888775 448999998899999999999999987432 12
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeE
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHV 644 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sg-s~dg~I 644 (730)
... .+|. ..+.++.|+|++..+++ +.|+.+.+||..+...........|...+..+.|.+++..++.+ ..|+.+
T Consensus 278 ~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 278 RTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 212 4554 68999999998888888 56788999999887766555422346678999984343555555 678999
Q ss_pred EEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE-EeCCCcEEEEeCCCCceeeec
Q 004789 645 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las-~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
++|+........... . ...+. .+.+.+ + ..+.. +..++.+.+|+..........
T Consensus 354 ~~~~~~~~~~~~~~~-------~--~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 354 RLWDLRTGKPLKTLE-------G--HSNVL--SVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EeeecCCCceeEEec-------C--CceEE--EEEECC-C-CCEEEEecCCCceEEEecccCeeeeec
Confidence 999998887222222 1 11145 888888 7 55555 889999999999988665443
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.6e-15 Score=165.10 Aligned_cols=312 Identities=22% Similarity=0.289 Sum_probs=232.4
Q ss_pred CCCCC-eeEeecC-CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCCcccc
Q 004789 341 LPDAD-SAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 417 (730)
Q Consensus 341 spdg~-~lat~~~-dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~~~~~ 417 (730)
++++. .++..+. |+.+++|+... .......+. +|...|..++|+|++.++++++. |+.+++|+......
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 190 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLE----GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-- 190 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC--CCeEEEEEe----cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--
Confidence 77777 5555444 89999999963 012222222 49999999999999998888886 99999999876332
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc-EEEEee-CCEEEEEEcCCceEEE-EEcCCCCCeEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFI 492 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~t~~~~~-~~~~~~~~v~~i~ 492 (730)
..... +|...|.+++|+ +. .+++++ |+.|.+||...+.... .+..|.... ...
T Consensus 191 -------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 191 -------------------LSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248 (466)
T ss_pred -------------------EEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence 11111 488999999999 55 555546 9999999999888888 688888775 448
Q ss_pred EcCCC-eEEEEECCCcEEEEecCCCce-EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
|+|++ .+++++.|+.+++|+...... +..+.+|...|.++.|+|++..+++++.|+.+.+||..+........ .
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~ 324 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----L 324 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----e
Confidence 99999 888999999999999987664 45556789999999999988888889989899999988743222111 1
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEE
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVF 647 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-gs~dg~I~iw 647 (730)
..|. ..+..+.|.+++..++.+ .|+.+.+|++........... ...+..+.+++ ...++. +..++.+.+|
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 325 KGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred cccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 3454 458889884332455553 778899999987773323321 22288899988 544444 6888999999
Q ss_pred ECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 648 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 648 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
+............ +. ..+. ...+.+ ++..+++++.++.+++|+...
T Consensus 398 ~~~~~~~~~~~~~-------~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 398 DLSTGSLLRNLDG-------HT-SRVT--SLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecccCeeeeeccC-------CC-CcEE--EEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 9999887766542 11 3455 788888 788999999999999999988
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.4e-16 Score=170.26 Aligned_cols=359 Identities=15% Similarity=0.151 Sum_probs=246.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC---EEEEEeCCCcEEEeecCCCc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~---~L~s~s~dg~I~iWd~~~~~ 414 (730)
..+|+|++++.... +.+|.||... ++.|.+ .+. +|..++..+.+.|... ++.+++.||.|++||+..+.
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~----Tg~~i~-~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTA----TGECIT-SLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecc----hHhhhh-hcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 57999999998664 4899999986 566666 343 4999999999998654 78899999999999998776
Q ss_pred cccc-c-----ccc-----------cc-----------------------------------------------------
Q 004789 415 QSLE-E-----ENV-----------NM----------------------------------------------------- 424 (730)
Q Consensus 415 ~~~~-~-----~~~-----------~~----------------------------------------------------- 424 (730)
.... . ... ..
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 5432 0 000 00
Q ss_pred --------eeeEecCCCCe--eEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC--c--eEEEEEcCCCCC
Q 004789 425 --------ESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET--F--QTLATFANPPPI 487 (730)
Q Consensus 425 --------~~~i~~~~~~~--~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t--~--~~~~~~~~~~~~ 487 (730)
...+|....+. .........|...++|.+++ ++++|+|. ||.|.+|.--. + .....+.=|...
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 00334433322 11111222477778999999 89999999 99999997432 1 233455568899
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
|.+++|+++| +|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+...+....|..|.+....+-+.. ..+
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--~tI 330 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--STI 330 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh--hhc
Confidence 9999999999 99999999999999999988 4555667889999999999999999999999999987552211 111
Q ss_pred cccccC----CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC---------CCCCeEEEEEecCC
Q 004789 567 HSFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------MDLPITYATYSCDG 632 (730)
Q Consensus 567 ~~~~~~----h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~---------h~~~v~~~~~spdg 632 (730)
+.+... .....+-.+.++++|.-+.++. +..|.|.+||+.+.+.+..+.... +...++.++.+..|
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 111111 0000145678899995444444 799999999998877665543211 13356778888889
Q ss_pred CEEEEEEc--------C--CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 633 KCIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 633 ~~l~sgs~--------d--g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
.+++++-. | -.+++|.......-..+......|.| ...+. .+..+|.....+++++.||.++||-+
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~--~~~va--t~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG--NAFVA--TIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC--ceeEE--EEEecCcccceeEEeccCCeEEEEEE
Confidence 99998642 3 35688987765544444443344433 33222 44445533348999999999999999
Q ss_pred ------CCCceeeec
Q 004789 703 ------LESEVEWGK 711 (730)
Q Consensus 703 ------~~~~~~w~~ 711 (730)
..+...|..
T Consensus 487 ~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 487 TDDSNIYKKSSNWTC 501 (792)
T ss_pred ecccccCcCccceEE
Confidence 444445553
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.9e-16 Score=147.39 Aligned_cols=277 Identities=17% Similarity=0.237 Sum_probs=190.9
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCC-----CCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCC
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 412 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~-----~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~ 412 (730)
.+.+|.+++++.|..+|+|-+..++... .+++..-+. ..+|.++|+.++|. ..+|++|+ ||.|+=|.+..
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~--eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVP--EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceee--ccccCCCeeeeeee--hhheeecc-CceEEEeeehh
Confidence 4789999999999999999999986432 122222222 24599999999999 34566665 59999998865
Q ss_pred CccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeE
Q 004789 413 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIAT 489 (730)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~ 489 (730)
..... ...++|......-.. . ..-..|+++... +..|.+|+|+.++-||+++|+..+++++|++.|.
T Consensus 91 ~~es~------~~K~lwe~~~P~~~~--~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 91 EEESL------ATKRLWEVKIPMQVD--A--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred hhhhc------cchhhhhhcCccccC--c--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 54311 111344433221110 0 123457777776 6677777799999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCC----------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 004789 490 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 490 ~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h----------~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~ 558 (730)
++.--... .+++|+.||++++||.+++++++.+... ...|.+++.+ ..+|++|+ ...+.+|++++.
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCC
Confidence 99885445 9999999999999999999998877431 2345566654 45888765 568999999997
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC-CCEEE
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIY 636 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~ 636 (730)
+..+..++. +.+..+.|..| .+++ |..+.+.-|.+ +|..-...... ....++..|+.. -++|-
T Consensus 238 e~t~vfpip----------a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 238 ESTCVFPIP----------ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIPVE--STACYSASWQTSPIKFIS 302 (325)
T ss_pred CceEEEecc----------cceeEeeeecc--eEEEeccccceeeeee-ccEEEEeccCC--ccceeeecccCCceEEEE
Confidence 766655555 67888888754 4444 66778999987 45544343322 334455555422 34555
Q ss_pred EEEcCCeEEEE
Q 004789 637 VSCKSGHVKVF 647 (730)
Q Consensus 637 sgs~dg~I~iw 647 (730)
.++..+.+.|+
T Consensus 303 ~ag~s~~~~i~ 313 (325)
T KOG0649|consen 303 IAGFSNKLHIL 313 (325)
T ss_pred ecccceeeeee
Confidence 56666666665
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.3e-17 Score=157.44 Aligned_cols=274 Identities=13% Similarity=0.108 Sum_probs=186.3
Q ss_pred CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEE
Q 004789 394 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 468 (730)
Q Consensus 394 ~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~ 468 (730)
..+|++-++|.|++||..+++.... +. ++...++.+.|. +..+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~---------------------fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE---------------------FK--GPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe---------------------ec--CCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 4688999999999999887654111 11 577777788887 56788888 99999
Q ss_pred EEEcCCceEEEEE--cCCC-CCeEEEEEcCCC-eEEEEE----CCCcEEEEecCCCce-EEEE-cCCCCCeEEEEEeCC-
Q 004789 469 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSLS- 537 (730)
Q Consensus 469 vwd~~t~~~~~~~--~~~~-~~v~~i~~spdg-~l~sgs----~dg~I~iwd~~~~~~-~~~~-~~h~~~V~~l~~spd- 537 (730)
+||+++......+ ..+. .+..|++....+ .+++|. .+-.|.+||++..+. +..+ ..|.+.|+++.|+|.
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 9999887655444 3444 466778777666 777775 355899999998765 6555 459999999999994
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC--cEEEEEecCcEEEEeCCCCceeeeec
Q 004789 538 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV 615 (730)
Q Consensus 538 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg--~~l~~s~dg~I~iwd~~~~~~~~~~~ 615 (730)
.+.|++||.||.|.+||+..... ...+.. ...+. ..|.++.|..++ +....+...+..+|++..+.+...+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~-viN~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE--EDALLH-VINHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc--hhhHHH-hhccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 58999999999999999987421 122221 12233 579999999887 54444899999999999887654443
Q ss_pred CCC----------CCCCeEEEEEecCCCEEEEEEc-CCeEEEEECC---CceEEEEeecccccCCCCcccceeeEEEEEe
Q 004789 616 PDK----------MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYPLVIAAH 681 (730)
Q Consensus 616 ~~~----------h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~---~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 681 (730)
... ....+.......++...+.++. -|+..++-+. ++..... ...+.|+|..-|+ ++.|.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~----~a~l~g~~~eiVR--~i~~~ 325 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE----PAILQGGHEEIVR--DILFD 325 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCc----cccccCCcHHHHH--HHhhh
Confidence 210 0112222222224445554444 4666666543 3322211 1122265577788 77887
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 004789 682 PLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 682 p~~~~~las~s~Dg~I~iWd~~ 703 (730)
. .+.++.|||.||.+.+|...
T Consensus 326 ~-~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 326 V-KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred c-ccceeeccCCCceEEEEecC
Confidence 6 68899999999999999963
No 173
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=168.59 Aligned_cols=294 Identities=15% Similarity=0.204 Sum_probs=219.2
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.+|.+.|..|.|+..|..|++||.|..|.+||+........ +..+|...|....|-
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------FESGHCNNVFQAKFIPF 196 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccc----------------------cccccccchhhhhccCC
Confidence 35999999999999999999999999999999987765221 222677777665555
Q ss_pred --CcEEEEee-CCEEEEEEcC-CceE--EEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEE---cC
Q 004789 456 --GSHLFSAS-GGKISIFSLE-TFQT--LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---KG 524 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~-t~~~--~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~---~~ 524 (730)
...+++++ ||.|++=.+. ++.+ ...+..|.+.|.-++.-|+. .|.+++.|+.+.-+|++++.....+ ..
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 66788888 9999987764 3333 34455799999999999999 8999999999999999987544333 22
Q ss_pred CCC---CeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecc-eeecccccC----CCCCCCCeEEEEEecCCcEEEEE
Q 004789 525 HQN---RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCS-KFLHSFQTG----LVPETTIVNHIQFHPDQIHLLSI 595 (730)
Q Consensus 525 h~~---~V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~-~~i~~~~~~----h~~~~~~v~~l~~spdg~~l~~s 595 (730)
+.. ...+++.+|... .+++|+.|..+++||.+.-..... ..+..+... ..+ ..|++++++.++.-++++
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~--v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP--VNITGLVYSHDGSELLAS 354 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc--ccceeEEecCCccceeee
Confidence 333 567889999664 789999999999999986332110 111211111 112 579999999877777665
Q ss_pred -ecCcEEEEeCCC--C----------ceeee-ecCCCCCCCeEEEEE-ecCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 596 -HEGQIDVYEAPT--L----------NHTSQ-LVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 596 -~dg~I~iwd~~~--~----------~~~~~-~~~~~h~~~v~~~~~-spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
.|-.|+++.-.. | ..+.. ++++.....|..+-| .|...|+++|+.=|.|.||+-.+++.+..+.
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me- 433 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME- 433 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-
Confidence 888899995432 2 12222 555555667888876 5889999999999999999999999888776
Q ss_pred ccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 661 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 661 ~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
|. ..-|+ |+--|| .-..||++|-|.-|+||.+.+.+
T Consensus 434 ------gD-r~VVN--CLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 434 ------GD-RHVVN--CLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ------cc-cceEe--ccCCCC-CCchhhccCCccceeeecCCccc
Confidence 43 22577 899999 67899999999999999996554
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=3.5e-15 Score=158.48 Aligned_cols=270 Identities=12% Similarity=0.126 Sum_probs=174.5
Q ss_pred EeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCC-ccccccccccce
Q 004789 348 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSN-KQSLEEENVNME 425 (730)
Q Consensus 348 at~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~-~~~~~~~~~~~~ 425 (730)
++...++.|++|++...........+. +.+....++++|+|++|++++. ++.|.+|++... ..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---------- 70 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---------- 70 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce----------
Confidence 344678999999996311111223322 3456778999999999877754 788999987622 11
Q ss_pred eeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCC-c---eEEEEEcCCCCCeEEEEEcCCC
Q 004789 426 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-F---QTLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 426 ~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t-~---~~~~~~~~~~~~v~~i~~spdg 497 (730)
...... ........++++ ++++++++ ++.|.+|++++ + +.+..+. +.....+++++|+|
T Consensus 71 ---------~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 71 ---------TFAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred ---------EEeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 001100 122345678888 88888877 79999999974 3 2233332 23345678899999
Q ss_pred -eE-EEEECCCcEEEEecCCCceEE-------EEcCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--Cceeccee
Q 004789 498 -LF-AFGFDDSSILVHCPCTKKTKA-------KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKF 565 (730)
Q Consensus 498 -~l-~sgs~dg~I~iwd~~~~~~~~-------~~~~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~~--~~~~~~~~ 565 (730)
++ ++...++.|.+||+.+...+. ... .......++|+|+|++++++.. ++.|.+||+.. ++......
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 55 455567899999997643221 111 1234678999999999988776 89999999973 22211122
Q ss_pred ecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
+......... ......+.++|+|++++++ .++.|.+|++.... .+..... ......+.++|||++|+++.
T Consensus 217 ~~~~p~~~~~-~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 217 LDMMPADFSD-TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EecCCCcCCC-CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEE
Confidence 2211111000 0233468999999999996 46889999986432 2222222 23456789999999999877
Q ss_pred c-CCeEEEEECC
Q 004789 640 K-SGHVKVFDTS 650 (730)
Q Consensus 640 ~-dg~I~iwd~~ 650 (730)
. +++|.+|+++
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.4e-16 Score=157.99 Aligned_cols=230 Identities=13% Similarity=0.142 Sum_probs=171.8
Q ss_pred CCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 378 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
.||+++|..++|+| +...+|+||.|.+|.||++..+..... .. ..+.. +.+|...|.-++|+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------lt--epvv~--L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LT--EPVVE--LYGHQRRVGLVQWHP 141 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cc--cceEE--EeecceeEEEEeecc
Confidence 47999999999999 556789999999999999977665222 00 11111 12799999999999
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCC-eE
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-IT 530 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~ 530 (730)
.+.|++++ |.+|.+||+.||+.+-++. |...|.++.|+.|| +|++++.|..|+|||.++++.+..-.+|.+. -.
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 77888888 9999999999999999988 99999999999999 9999999999999999999999888777643 34
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 004789 531 CLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 605 (730)
Q Consensus 531 ~l~~spd~~~l~s~s---~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~ 605 (730)
.+.|-.+|..+-+|- .+..+-+||...-+. ...++++... +.|.---+.+|...++. | .|+.|+.|.+
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e--P~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEE--PIALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccC--cceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 566888888554443 367899999877321 1112211111 46777778889888887 6 8999999999
Q ss_pred CCCceeee-ecCCCCCCCeEEEEEecC
Q 004789 606 PTLNHTSQ-LVPDKMDLPITYATYSCD 631 (730)
Q Consensus 606 ~~~~~~~~-~~~~~h~~~v~~~~~spd 631 (730)
.+..+... +..-....+-..+.|-|.
T Consensus 294 t~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccccCCcccccccccc
Confidence 76553222 211122455566677664
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.6e-16 Score=157.48 Aligned_cols=201 Identities=11% Similarity=0.115 Sum_probs=163.0
Q ss_pred CCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCc-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEE
Q 004789 444 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 510 (730)
Q Consensus 444 ~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~-------~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~i 510 (730)
+|.++|..++|+ ++.||+|+ |.+|.||++..+ +.+..+.+|...|..++|+|.. .|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 799999999999 88899999 999999998653 4567888999999999999998 8999999999999
Q ss_pred EecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 511 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 511 wd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
||+.+|+.+-++. |.+.|.++.|+.||.++++++.|+.|+|||.++++..... .+|.. ..-..+.|-.+|.
T Consensus 159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASGK 229 (472)
T ss_pred EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccCc
Confidence 9999999888888 9999999999999999999999999999999997543322 34443 3455778888898
Q ss_pred EEEEE----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCce
Q 004789 591 HLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 591 ~l~~s----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~-sgs~dg~I~iwd~~~~~ 653 (730)
.+.+| ++..+.+||..+.+.-..+..-.....|.---|.+|.+.++ +|-.|+.|+-|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55554 67889999977644322221112366677777888888777 55679999999988765
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=7.6e-16 Score=169.19 Aligned_cols=299 Identities=13% Similarity=0.069 Sum_probs=206.3
Q ss_pred CcccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec--CCCEEEEEeCCCcEEEeecCC
Q 004789 335 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQS 412 (730)
Q Consensus 335 ~~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp--dg~~L~s~s~dg~I~iWd~~~ 412 (730)
+....+.|-...+++++....|++||....+ .+..+.. +......|+.+.+-. |...+++|+.||.|+||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~---~l~~F~n-~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGR---LLNGFDN-GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCc---eeccccC-CCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345788888999999988999999997422 2222211 112356899999876 456899999999999997432
Q ss_pred CccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcC-CCCCe
Q 004789 413 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIA 488 (730)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~-~~~~v 488 (730)
... ....-+.-|..-++... +..+.=.-+.|. ..+|++++ -..|+|||.....++..+.. ....|
T Consensus 1143 ~~~-----~~~eLVTaw~~Ls~~~~------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~v 1211 (1387)
T KOG1517|consen 1143 DKW-----KKPELVTAWSSLSDQLP------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLV 1211 (1387)
T ss_pred ccc-----CCceeEEeeccccccCc------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccc
Confidence 210 00001123433322221 111111345666 44555555 78999999998888887763 34466
Q ss_pred EEEEEcCC-C-eEEEEECCCcEEEEecCCC---ceEEEEcCCCCC--eEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCce
Q 004789 489 TYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR--ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 489 ~~i~~spd-g-~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~--V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~ 560 (730)
+++.-+-. | .+++|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|- .|++|+.+|.|++||++....
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 66665433 4 9999999999999998764 356778888887 99999998774 599999999999999998422
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-----CCCCCeEEEEEecCCCEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCI 635 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~spdg~~l 635 (730)
.....+ .....- .+..+++..+++...+|+|+.+.|+||++. |+.+..++.. ...+.+.+++|+|---++
T Consensus 1292 e~~~~i---v~~~~y-Gs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1292 ETFLTI---VAHWEY-GSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred ccccee---eecccc-CccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhh
Confidence 111111 111100 035899999999999999766999999994 5555544321 225678999999999999
Q ss_pred EEEEcCCeEEEEECCCce
Q 004789 636 YVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 636 ~sgs~dg~I~iwd~~~~~ 653 (730)
++|+.|..|.||......
T Consensus 1367 AaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhccCCceEEEeecCCcC
Confidence 999999999999876543
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=2.3e-16 Score=150.40 Aligned_cols=247 Identities=14% Similarity=0.174 Sum_probs=178.2
Q ss_pred CCCC-CCCeeEeecCC-------CcEEEEeecCCCCCcceeeeecC---CCCCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 004789 339 TSLP-DADSAVCAKSL-------EKSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSHSGDFLVALTQTATHKL 407 (730)
Q Consensus 339 ~~sp-dg~~lat~~~d-------g~i~lWd~~~~~~~~~~~~~~l~---~~gh~~~V~~v~fspdg~~L~s~s~dg~I~i 407 (730)
+.+| |...|+|+-.+ ..+.||.+.+.-.+....++... ++.+-+.|.|+.|.|++..|++-. |..|.+
T Consensus 70 as~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l 148 (370)
T KOG1007|consen 70 ASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVL 148 (370)
T ss_pred hcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEE
Confidence 4445 44555554332 34689999764444222222211 123566999999999999888876 789999
Q ss_pred eecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEeeCCEEEEEEcCCceEEEEEc-
Q 004789 408 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFSLETFQTLATFA- 482 (730)
Q Consensus 408 Wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~sdg~I~vwd~~t~~~~~~~~- 482 (730)
|+++....+.. .+-...+ .++....++-+|+ |+.+++.+|+++..||++|.++...+.
T Consensus 149 ~~l~ess~~va--------ev~ss~s---------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 149 WSLDESSKIVA--------EVLSSES---------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred EEcccCcchhe--------eeccccc---------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 99987765211 0000000 0345566677787 889999999999999999988777765
Q ss_pred CCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC
Q 004789 483 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 483 ~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~ 558 (730)
.|...|..+.|+|+- .|++|+.||.|++||.+.. .++..+.+|...|+++.|+|.. .++++|+.|..|.+|...+-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 788899999999999 9999999999999998864 6788899999999999999954 57789999999999976541
Q ss_pred ce-------------------ecceeecc----cccCCCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCC
Q 004789 559 KK-------------------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAP 606 (730)
Q Consensus 559 ~~-------------------~~~~~i~~----~~~~h~~~~~~v~~l~~spdg~~l~~--s~dg~I~iwd~~ 606 (730)
.. .+.++++. ....|+ ..|++++|+.-..++++ +.||++.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 10 01112221 445666 79999999998888776 589998876653
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=2e-14 Score=152.68 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=172.3
Q ss_pred EEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEc
Q 004789 397 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL 472 (730)
Q Consensus 397 ~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~ 472 (730)
++...++.|.+|++.+.... ..++.. .+.+....++++ +++|++++ ++.|.+|++
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l------------------~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGAL------------------TLLQVV---DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEcCCCCCEEEEEECCCCce------------------eeeeEE---ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 33466899999998532110 011111 133456678888 78887765 789999999
Q ss_pred C-CceE--EEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEecCC-C---ceEEEEcCCCCCeEEEEEeCCCCEEEE
Q 004789 473 E-TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT-K---KTKAKLKGHQNRITCLAYSLSLNVLVS 543 (730)
Q Consensus 473 ~-t~~~--~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~~~-~---~~~~~~~~h~~~V~~l~~spd~~~l~s 543 (730)
. ++.. ..... ..+....++++|++ .+++++ .++.|.+|++.+ + +.+..+. +.....+++++|+++++++
T Consensus 65 ~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 65 ADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred CCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEE
Confidence 6 3432 22222 23356789999999 666665 478999999874 3 2233333 2334677899999998865
Q ss_pred Ee-CCCcEEEEEcCCCceecc---eeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC--Cc--eeee
Q 004789 544 SG-ADAQLCVWDAVGWKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LN--HTSQ 613 (730)
Q Consensus 544 ~s-~dg~I~vwd~~~~~~~~~---~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~--~~--~~~~ 613 (730)
++ .++.|.+||+.+...... ..+. ...+ .....++|+|+|++++++ .++.|.+||+.. ++ .+..
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g-----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVT-TVEG-----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCcee-cCCC-----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 54 569999999976221110 1111 1222 346789999999999884 479999999973 22 2333
Q ss_pred ecCCC----CCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEE
Q 004789 614 LVPDK----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 688 (730)
Q Consensus 614 ~~~~~----h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~l 688 (730)
+.... +......+.++|+|++++++.. ++.|.+|++........+... .+.| ...+ .++++| ++++|
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~--~~~~---~~p~--~~~~~~-dg~~l 288 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH--QPTE---TQPR--GFNIDH-SGKYL 288 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE--Eecc---ccCC--ceEECC-CCCEE
Confidence 32111 1223346889999999999865 689999998654311111110 0012 1233 789999 78888
Q ss_pred EEEeC-CCcEEEEeCCC
Q 004789 689 ALGLT-NGRVHVIEPLE 704 (730)
Q Consensus 689 as~s~-Dg~I~iWd~~~ 704 (730)
+++.. +++|.+|++..
T Consensus 289 ~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 289 IAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEccCCcEEEEEEcC
Confidence 87664 89999998864
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=2.8e-16 Score=149.76 Aligned_cols=227 Identities=13% Similarity=0.203 Sum_probs=171.8
Q ss_pred CCEEEEEEcCCce--E-EEEEcCCCCCeEEEEEcCCC--eEEEEECC-------CcEEEEecCCC---------ceEEEE
Q 004789 464 GGKISIFSLETFQ--T-LATFANPPPIATYFILLPQD--LFAFGFDD-------SSILVHCPCTK---------KTKAKL 522 (730)
Q Consensus 464 dg~I~vwd~~t~~--~-~~~~~~~~~~v~~i~~spdg--~l~sgs~d-------g~I~iwd~~~~---------~~~~~~ 522 (730)
|+.|.+.++..+. . ...|..|.+.|..++-+|.. .|+++..+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5778887776533 2 24566788999999999988 66766553 25789987643 233344
Q ss_pred c-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--CCcEEEEEecCc
Q 004789 523 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSIHEGQ 599 (730)
Q Consensus 523 ~-~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--dg~~l~~s~dg~ 599 (730)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.............++. ...++-+|+| +|..+++..|++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~---~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR---HSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc---ceecccccCCCCccceEEEeCCCc
Confidence 3 3556899999999999998876 8899999998865421111111112222 4577889999 799999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCc-eEEEEeecccccCCCCcccceeeEE
Q 004789 600 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
+..||+++.++...+.. .|...|..+.|.|+.+ +|++++.||.|+|||.+.. .+++.+. +| ...|+ +
T Consensus 195 l~~~D~RT~~~~~sI~d-AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~H-sHWvW--~ 263 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIED-AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GH-SHWVW--A 263 (370)
T ss_pred EEEEEccchhhhcchhh-hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CC-ceEEE--E
Confidence 99999999888777764 5789999999999875 5778889999999998764 4455554 65 77899 9
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 678 IAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 678 v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
|.|+|...+++.+||.|..|.+|...+-
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred EEecCccceEEEecCCCceeEEEecccc
Confidence 9999977889999999999999988644
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=1.7e-16 Score=165.23 Aligned_cols=246 Identities=18% Similarity=0.171 Sum_probs=176.8
Q ss_pred CCCeeEe--ecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 343 DADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 343 dg~~lat--~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
+.+.+|+ ++..|.|-|+++.. ++....-.+++-.....|+.+.|.| |...||+++.||.|++|.+..+....
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-- 664 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-- 664 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--
Confidence 3445553 45569999999974 4443333333333678899999999 66789999999999999887654300
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-- 497 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-- 497 (730)
.+......+..|...|+++.|+|-.
T Consensus 665 -----------------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 665 -----------------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred -----------------------------------------------------ccCCcceeeecccceEEEEEecchhhh
Confidence 0123334566788899999999987
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 577 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~ 577 (730)
.|++++.|.+|++||+.+++....+.+|++.|.+++|+|+|+.+++.+.||+|++|+.++++ .+++ ++..+-.
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~gpvg 764 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKGPVG 764 (1012)
T ss_pred HhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999854 3333 2222111
Q ss_pred CCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEEC
Q 004789 578 TIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDT 649 (730)
Q Consensus 578 ~~v~~l~~spdg~~l~~-s~----dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~ 649 (730)
..-..|.|.-||+++++ |. ...|.+||..+.. .+.+..... ...+.--.+.+|.. ++++|-.|..|++|.+
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEEEEe
Confidence 34457888889999987 53 4569999976532 333322111 11122223445544 5668888999999998
Q ss_pred CCceE
Q 004789 650 STLEL 654 (730)
Q Consensus 650 ~~~~~ 654 (730)
....+
T Consensus 844 ~~esP 848 (1012)
T KOG1445|consen 844 IYESP 848 (1012)
T ss_pred cCCCc
Confidence 76554
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=1.6e-15 Score=169.39 Aligned_cols=297 Identities=12% Similarity=0.158 Sum_probs=195.6
Q ss_pred CCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.|...|..++.++.. .++++||.||+|++|+...-... ....-+...|+. -.+.+.++...
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---~~s~rS~ltys~-------------~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---GGSARSELTYSP-------------EGSRVEKVTMCGN 1109 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---cceeeeeEEEec-------------cCCceEEEEeccC
Confidence 488999999988755 99999999999999998654321 000111112221 34667777777
Q ss_pred CcEEEEee-CCEEEEEEcCCc-------eEEEEEcCC-CC-CeEEEEEcCCC---eEEEEECCCcEEEEecCCCceEEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETF-------QTLATFANP-PP-IATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKL 522 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~-------~~~~~~~~~-~~-~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~~~~~~~ 522 (730)
++.+|+++ ||.|.+.+++.. .+.+....+ .+ .|..-++.... .++.+..-+.|..||++.......+
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 88899999 999999998752 122222222 22 33333443332 6778888899999999987665554
Q ss_pred cC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC---cEEEE-E-
Q 004789 523 KG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLS-I- 595 (730)
Q Consensus 523 ~~--h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg---~~l~~-s- 595 (730)
+. ..+.|++++.+|.+++++.|+..|.+.+||++-+... .....++. .+|+.+..+|-. ...++ +
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-----~sw~~P~~---~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-----LSWEHPAR---APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee-----ecccCccc---CCcceEEeeccCCCCceEEEecc
Confidence 42 4578999999999999999999999999999985432 22223333 578888888743 34444 3
Q ss_pred -ecCcEEEEeCCCCceeeeecCC-----------------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEE--
Q 004789 596 -HEGQIDVYEAPTLNHTSQLVPD-----------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR-- 655 (730)
Q Consensus 596 -~dg~I~iwd~~~~~~~~~~~~~-----------------~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~-- 655 (730)
..+.|.+|++.+|.+-..+... .+.-.....++...+.++++|+.|+.|+.||....+..
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~ 1341 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSY 1341 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccc
Confidence 4577999999998776665443 01112223344445578999999999999997643322
Q ss_pred ------------------EEee----------------------------cccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 656 ------------------CQIN----------------------------LTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 656 ------------------~~~~----------------------------~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
..+. .....+++.|...|. ++++...+..+|+
T Consensus 1342 ~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It--dma~~~~~q~llv 1419 (1431)
T KOG1240|consen 1342 AVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT--DMATLKSEQPLLV 1419 (1431)
T ss_pred cccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh--hhhhhccCccEEE
Confidence 0000 000112232344566 6666554567999
Q ss_pred EEeCCCcEEEEe
Q 004789 690 LGLTNGRVHVIE 701 (730)
Q Consensus 690 s~s~Dg~I~iWd 701 (730)
+++.||.|+||.
T Consensus 1420 s~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1420 SSSRDGVIKIWK 1431 (1431)
T ss_pred EecCCCeeeecC
Confidence 999999999994
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-16 Score=164.60 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=187.0
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC--------ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 511 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t--------~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iw 511 (730)
.|...|+.++|. ...|++++ ||+|.+|+++. -+++.+|.+|.++|.|+++.+++ .+++|+-||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 488899999999 77899999 99999999932 35778999999999999999999 99999999999999
Q ss_pred ecCCC----------ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeE
Q 004789 512 CPCTK----------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 581 (730)
Q Consensus 512 d~~~~----------~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~ 581 (730)
++... .....+.||.+.|+.+++++....|++++.||+++.|+...... +.......+ +.-.
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~----g~Pl 443 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----CTFGEPKEH----GYPL 443 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----cccCCcccc----CCcc
Confidence 65421 23456789999999999999999999999999999999887432 111112222 2445
Q ss_pred EEEEecCC-cEEEEE-ecCcEEEEeCCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004789 582 HIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 654 (730)
Q Consensus 582 ~l~~spdg-~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~ 654 (730)
++.+-... ...+++ .-+.-.++++.....+..+.... ....+..+.+.|++.+.+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 55554332 122222 33444455555444444433211 134577888999999999999999999999999998
Q ss_pred EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 004789 655 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 655 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
+..... | ...+. ++++.| ++.+|++++.||.|++|.+....+....
T Consensus 524 l~s~~a-------~-~~svt--slai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 524 LHSMVA-------H-KDSVT--SLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred chheee-------c-cceec--ceeecC-CCceEEeecCCceeehhhccchheeecc
Confidence 877652 2 33466 899999 8999999999999999999877654433
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.4e-16 Score=152.05 Aligned_cols=275 Identities=9% Similarity=0.090 Sum_probs=186.3
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec--CCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp--dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
..+|++-+.|+|++||..... ....+ .+|...++.++|.. ....+.+|+.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---~l~~f----k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---LLEEF----KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---hhhee----cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 568888899999999997422 22222 24888888999987 455789999999999999987665221
Q ss_pred cceeeEecCCCCeeEeecccCCCC-CCeeEEEEe--CcEEEEee-----CCEEEEEEcCCceE-EEEE-cCCCCCeEEEE
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFI 492 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~-~~V~~l~~s--~~~l~s~s-----dg~I~vwd~~t~~~-~~~~-~~~~~~v~~i~ 492 (730)
..|. ++. .+..|++.+ ++.+++|. +-.|.+||++..+. +..+ ..|...|+++.
T Consensus 110 ----~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 110 ----ISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred ----eecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 1111 233 566777776 66777775 35899999988766 5554 47999999999
Q ss_pred EcCCC--eEEEEECCCcEEEEecCCCc----eEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceeccee
Q 004789 493 LLPQD--LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 493 ~spdg--~l~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~ 565 (730)
|+|.. .|++|+.||-|.++|++... .+.++. |...|.++.|..++ +.|.+-+...+..+|++..+.......
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 99999 99999999999999987542 233333 77789999999877 458888899999999998865332222
Q ss_pred ecccccCCC---CCCCCeEEEEEec-CCcEEEE-Ee-cCcEEEEeC---CCCc---eeeeecCCCCCCCeEEEEEecCCC
Q 004789 566 LHSFQTGLV---PETTIVNHIQFHP-DQIHLLS-IH-EGQIDVYEA---PTLN---HTSQLVPDKMDLPITYATYSCDGK 633 (730)
Q Consensus 566 i~~~~~~h~---~~~~~v~~l~~sp-dg~~l~~-s~-dg~I~iwd~---~~~~---~~~~~~~~~h~~~v~~~~~spdg~ 633 (730)
.+....+.. .+...+... .+| +....+. +. -|...++-+ .++. .+..+. ++|...|.++.|...+.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKND 329 (376)
T ss_pred CccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccc
Confidence 110000000 000111111 123 3344444 33 344333332 2332 333333 34688899999998899
Q ss_pred EEEEEEcCCeEEEEECC
Q 004789 634 CIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~~ 650 (730)
++++|++||.+.+|...
T Consensus 330 ~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeeccCCCceEEEEecC
Confidence 99999999999999863
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.6e-16 Score=158.71 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=149.2
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.||++-|+|+.|+.+|.+|++||.|-.+.|||.-..+. ++ .+..+|...|.++.|-
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---------------------lh-sI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---------------------LH-SISTGHTANIFSVKFVPY 104 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce---------------------ee-eeecccccceeEEeeecc
Confidence 46999999999999999999999999999998754332 11 1122799999999998
Q ss_pred --CcEEEEee-CCEEEEEEcCC----------ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCce--
Q 004789 456 --GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-- 518 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t----------~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~-- 518 (730)
++.+++|. |..|+++|+.. ......+..|...|..++..|++ .+.+++.||+|+-+|++....
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 66788888 99999999974 23445566899999999999999 899999999999999986321
Q ss_pred -----E---EEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC--------ceecc-----eeecccccCCCCC
Q 004789 519 -----K---AKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGW--------KKLCS-----KFLHSFQTGLVPE 576 (730)
Q Consensus 519 -----~---~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~--------~~~~~-----~~i~~~~~~h~~~ 576 (730)
. ..+...--...++..+|.. .+|++|+.|-..++||.+.. ..... .++..+..+|..+
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1 1111122345688899954 67999999999999995431 10000 0122122222200
Q ss_pred C--------CCeEEEEEecCCcEEEEE-ecCcEEEEeCCC
Q 004789 577 T--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 607 (730)
Q Consensus 577 ~--------~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~ 607 (730)
. ..++.++|+|+|.-|+++ ....|+++|+..
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 0 125668999999999987 445699998764
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.1e-14 Score=158.64 Aligned_cols=336 Identities=9% Similarity=0.062 Sum_probs=221.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
....+.|.+.+..-. ..+.+|...... ........ ...|+-.+++.++||+++++|+|..||.|.+|.--....
T Consensus 166 I~~~~~ge~~~i~~~-~~~~~~~v~~~~--~~~~~~~~-~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-- 239 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHM-CKIHIYFVPKHT--KHTSSRDI-TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-- 239 (792)
T ss_pred EEEcCCceEEEEEEe-eeEEEEEecccc--eeeccchh-hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence 445556665554433 567778776421 11100000 012777899999999999999999999999997433111
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
+..+..+++ =|...|.+++|+ |.+|++|+ .|.+.+|.+++++ .+-++.-.+.|..+.++
T Consensus 240 ------------~~~t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 240 ------------DSETCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS 301 (792)
T ss_pred ------------ccccceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence 111222333 278899999999 99999999 9999999999998 55566678899999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcC-----------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-----------h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~ 562 (730)
||+ ..+....|+.|.+....+.....++.+ ..+-.+.++++|.-+.++..+..|.|.+||+.+.+...
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence 999 888888899999998766554444433 23456778899977788888999999999998865432
Q ss_pred ceeecccccCCCC----CCCCeEEEEEecCCcEEEEE---e------cC--cEEEEeCCCCc---eeeeecCCCCCCCeE
Q 004789 563 SKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI---H------EG--QIDVYEAPTLN---HTSQLVPDKMDLPIT 624 (730)
Q Consensus 563 ~~~i~~~~~~h~~----~~~~v~~l~~spdg~~l~~s---~------dg--~I~iwd~~~~~---~~~~~~~~~h~~~v~ 624 (730)
...+- ...+.. ....+++++.+..|.++++. . || .+++|-..... .+.+....+|...+.
T Consensus 382 ~~~v~--~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 382 KLQVC--DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred eEEEE--eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 21111 111110 01356788888889999873 1 22 37888764332 122222235666666
Q ss_pred EEEEec-CCC-EEEEEEcCCeEEEEECCCceEEEEee----cccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEE
Q 004789 625 YATYSC-DGK-CIYVSCKSGHVKVFDTSTLELRCQIN----LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 698 (730)
Q Consensus 625 ~~~~sp-dg~-~l~sgs~dg~I~iwd~~~~~~~~~~~----~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~ 698 (730)
..++.+ ... ..++++.||.++||-+...+.+.... .. .+. ..+..++. +.+|+. ||..| +++.|++|.
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~-~i~-sy~k~~i~--a~~fs~-dGsll-a~s~~~~It 533 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCK-AIG-SYHKTPIT--ALCFSQ-DGSLL-AVSFDDTIT 533 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEe-eee-ccccCccc--chhhcC-CCcEE-EEecCCEEE
Confidence 666553 333 78899999999999984432211110 00 000 11244566 889998 78555 455788999
Q ss_pred EEeCCCC
Q 004789 699 VIEPLES 705 (730)
Q Consensus 699 iWd~~~~ 705 (730)
+||..+.
T Consensus 534 iwd~~~~ 540 (792)
T KOG1963|consen 534 IWDYDTK 540 (792)
T ss_pred EecCCCh
Confidence 9999884
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.7e-16 Score=164.25 Aligned_cols=257 Identities=13% Similarity=0.149 Sum_probs=182.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|.+.|.+++|.|....|++++.||++.+|+++.... .....+.+.+...+|.++|.|+++. ++
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~---------------s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK---------------SAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC---------------ccccceeeeEEEecccCceEEEEecCCce
Confidence 899999999999999999999999999999944211 0111111111122799999999999 99
Q ss_pred EEEEee-CCEEEEEEcCCc----------eEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC-
Q 004789 458 HLFSAS-GGKISIFSLETF----------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 524 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~----------~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~- 524 (730)
.+++|+ ||+|+.|++... .....+.+|.+.|+.+++|+.. .|++++.||+++.|+...... .++..
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999 999999965321 2345677999999999999999 999999999999999876655 33432
Q ss_pred -CCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeec---ccccCCCCCCCCeEEEEEecCCcEEEEE-ecC
Q 004789 525 -HQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLH---SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 598 (730)
Q Consensus 525 -h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~---~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg 598 (730)
..+...++.+.... .+.++ +.....+++...+......+. ....... ...+..+.++|.+...+++ .|+
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~--~~~in~vVs~~~~~~~~~~hed~ 511 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRR--YPQINKVVSHPTADITFTAHEDR 511 (577)
T ss_pred cccCCcceEeeccchhHhhhh---hcccccccchhhhhhhheeeccccCCCcccc--cCccceEEecCCCCeeEecccCC
Confidence 22344555554322 12222 233333333321111111110 0000000 0357788999999888885 899
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.|+++|..+++.+..... |...++++++.|+|-+|++|+.||.+++|.+.....+....
T Consensus 512 ~Ir~~dn~~~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 512 SIRFFDNKTGKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred ceecccccccccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 999999999999887764 68999999999999999999999999999998766554443
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.7e-15 Score=164.93 Aligned_cols=294 Identities=15% Similarity=0.148 Sum_probs=201.8
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----Cc
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GS 457 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~ 457 (730)
..-..+.|+|-...++++...-.|+|||++.++.... ++ ++. .....|+.+.+- ..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~----------F~--n~~--------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNG----------FD--NGA--------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceecc----------cc--CCC--------CCCCccceeeeecccchh
Confidence 3456788999888899988888999999988765111 11 110 245678888887 45
Q ss_pred EEEEee-CCEEEEEEcC-----CceEEEEEcCC-------CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc
Q 004789 458 HLFSAS-GGKISIFSLE-----TFQTLATFANP-------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 523 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~-----t~~~~~~~~~~-------~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~ 523 (730)
.+++|+ ||.|+||+-- +.+.+..+.+- .+.-.-+.|.... +|+++|.-..|+|||.....++..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 688888 9999999742 22344333211 1111345676666 77777778899999998877776664
Q ss_pred C-CCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE-EEE-EecCc
Q 004789 524 G-HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEGQ 599 (730)
Q Consensus 524 ~-h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~-l~~-s~dg~ 599 (730)
. ....|+++.-+. .|+.+++|..||.|++||.+...... .+. ....|... .+|..+.+.+.|-. |++ +.+|.
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds--~v~-~~R~h~~~-~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS--LVC-VYREHNDV-EPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccc--cce-eecccCCc-ccceeEEeecCCCcceeeeccCCe
Confidence 3 445677765543 46999999999999999998754322 222 34455410 13899999886544 666 69999
Q ss_pred EEEEeCCCCceeeeecCCCC---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecc-cccCCCCcccceee
Q 004789 600 IDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYAQPGTISLELYP 675 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~~h---~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~gh~~~~v~~ 675 (730)
|++||++.......+....| ++..+++..+++...+|+|+. +.|.||++... .+..+... .|. |...+.+.
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~--~q~~gs~s- 1355 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFM--GQRIGSVS- 1355 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccc--cCcCCCcc-
Confidence 99999987432222221111 335999999999999999998 99999998754 34443322 121 22234455
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+++||| ..-++|+|+.|.+|.||....+.
T Consensus 1356 -cL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1356 -CLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -eeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999 77889999999999999987653
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.8e-16 Score=148.09 Aligned_cols=265 Identities=14% Similarity=0.052 Sum_probs=183.5
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
.+|.+|..-|.|.+|++...+..-...- .|+..|+.+.--|++. |.+-+.|+.+.+|++........
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~------~g~~~it~lq~~p~d~-l~tqgRd~~L~lw~ia~s~~i~i------ 92 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRL------FGRLFITNLQSIPNDS-LDTQGRDPLLILWTIAYSAFISI------ 92 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhh------hccceeeceeecCCcc-hhhcCCCceEEEEEccCcceEEE------
Confidence 3488899999999999975432222211 2788999999999865 89999999999999876543211
Q ss_pred eeeEecCCCCeeEeecccCCCCCCeeEEEEe-C----------cEEEEeeC--CEEEEEEcCCceEEEEEc----CCCCC
Q 004789 425 ESQLYQPSSKLVMTNDIAADPKDSISCFALR-G----------SHLFSASG--GKISIFSLETFQTLATFA----NPPPI 487 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~----------~~l~s~sd--g~I~vwd~~t~~~~~~~~----~~~~~ 487 (730)
|+-.++++.|. - ..++.-+. ..+++-|......+.... +..+.
T Consensus 93 --------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 93 --------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred --------------------eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence 22223333332 0 11222111 112223322222222221 23456
Q ss_pred eEEEEEcCC-C---eEEEEECCCcEEEEecCCCc----------eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 004789 488 ATYFILLPQ-D---LFAFGFDDSSILVHCPCTKK----------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 553 (730)
Q Consensus 488 v~~i~~spd-g---~l~sgs~dg~I~iwd~~~~~----------~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vw 553 (730)
+.|..+..+ + .+++|..+|.|.+||+.++. .......|..+|.++.|.+.-..=++|+.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 777775433 3 77888999999999999873 333345689999999998876667888888999999
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
++............ ....+ -.|..+.+-||++.+|+ |.|++||+|+.++..++..+.- |...|.+++|+|+.
T Consensus 233 Sl~~s~gslq~~~e-~~lkn----pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky--Hsagvn~vAfspd~ 305 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKE-ITLKN----PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDC 305 (323)
T ss_pred eeccccCcccccce-EEecC----CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh--hhcceeEEEeCCCC
Confidence 88753221111111 11122 26889999999999999 7999999999999999988864 68999999999999
Q ss_pred CEEEEEEcCCeEEEEEC
Q 004789 633 KCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 633 ~~l~sgs~dg~I~iwd~ 649 (730)
..+|+++.|+.|.+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=3.3e-15 Score=162.85 Aligned_cols=265 Identities=14% Similarity=0.184 Sum_probs=186.7
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCC
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 432 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~ 432 (730)
+.+.+|++.....+..... -...|.|++|+|.. ..+|.|+.+|.|.+||+..+.... .
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-------~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-------SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------P 280 (555)
T ss_pred ceEEEEecCCCCCceEEEe-------cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------------C
Confidence 4899999987533332222 47899999999955 566667779999999998876511 1
Q ss_pred CCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCceEE------EEEc------CCCCCeEEEEEcC
Q 004789 433 SKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTL------ATFA------NPPPIATYFILLP 495 (730)
Q Consensus 433 ~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~~~------~~~~------~~~~~v~~i~~sp 495 (730)
.+... ....|..+|..+.|. +.-+++++ ||.|..|+++.-... .... .....+++++|.+
T Consensus 281 s~ls~---~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 281 SGLSA---LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred ccccc---ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 11111 111589999999998 44478888 999999988653321 1111 1234678999998
Q ss_pred CC--eEEEEECCCcEEEEecCCC---c-----eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee
Q 004789 496 QD--LFAFGFDDSSILVHCPCTK---K-----TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 496 dg--~l~sgs~dg~I~iwd~~~~---~-----~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 565 (730)
.. .+++|+.+|.|.--+.... . ....+..|.++|+++.++|=+..++..+.|.++++|..... ..+
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----~~P 433 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----ASP 433 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----CCc
Confidence 88 9999999999887443322 1 12345568899999999997766555555999999988731 234
Q ss_pred ecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
+. ....+. ..|++++|||....+++ . .+|.|.+||+.... ++.+... +....+.+.|+++|+.|++|...
T Consensus 434 l~-~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 434 LL-SLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred ch-hhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCC
Confidence 44 233333 56999999997665555 4 78999999997543 3333322 25667788889999999999999
Q ss_pred CeEEEEECCCc
Q 004789 642 GHVKVFDTSTL 652 (730)
Q Consensus 642 g~I~iwd~~~~ 652 (730)
|++++|++...
T Consensus 508 G~~~~~~l~~~ 518 (555)
T KOG1587|consen 508 GTTHILKLSES 518 (555)
T ss_pred CcEEEEEcCch
Confidence 99999999643
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.8e-14 Score=141.09 Aligned_cols=236 Identities=13% Similarity=0.171 Sum_probs=178.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 459 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l 459 (730)
....+..+.|+.++..|..|+.||. ++|+...... +.... .....|-.+-|+..++
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--------------------~~~~~---~~~~~IvEmLFSSSLv 59 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--------------------CFSKD---TEGVSIVEMLFSSSLV 59 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHH--------------------hhccc---CCCeEEEEeeccccee
Confidence 3456777889999998888888874 5555433221 10000 1234455666777777
Q ss_pred EEee-C--CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcC---CCCCeEEEE
Q 004789 460 FSAS-G--GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLA 533 (730)
Q Consensus 460 ~s~s-d--g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~ 533 (730)
|..+ + ..+++++.+.+..+..+. ....|.++.++.+ +|+++-.+ .|+|||+++.+.++++.. +...+.++.
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeec
Confidence 7776 4 469999999888887775 4567889999877 56666555 499999999999988754 444566666
Q ss_pred EeCCCCEEEEEe--CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCc-EEEEeCCCCc
Q 004789 534 YSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ-IDVYEAPTLN 609 (730)
Q Consensus 534 ~spd~~~l~s~s--~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~-I~iwd~~~~~ 609 (730)
+++.+.+++.-+ ..|.|.+||+.+ ..++. ....|. +.+.+++|+++|.+||++ ..|+ ||++.+.+|+
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~n-----l~~v~-~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTIN-----LQPVN-TINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEccc-----ceeee-EEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 666677888633 368999999988 34444 455888 899999999999999995 5565 8999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
.+..|+-+.....|.+++|+|++++|++.+..++|+||.+..
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999998765567889999999999999999999999998865
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.1e-14 Score=139.11 Aligned_cols=284 Identities=13% Similarity=0.120 Sum_probs=195.5
Q ss_pred CCcEEEEEEec--C-CCEEEEEeC----CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEE
Q 004789 381 GGRVVRLIYSH--S-GDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 453 (730)
Q Consensus 381 ~~~V~~v~fsp--d-g~~L~s~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~ 453 (730)
.-.+.++.||. + +.+||.||. .+.|.|-.+. -.+++.+.... -.|.-+++.+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld-------------------~~s~e~~~~a~-fd~~YP~tK~~ 103 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLD-------------------EDSGELVEDAN-FDHPYPVTKLM 103 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEc-------------------cCCCceeccCC-CCCCCCccceE
Confidence 55678888883 3 346888875 3556554433 22222222111 15888999999
Q ss_pred Ee----Cc--EEEEeeCCEEEEEEcCCce--E--EEEE-----cCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC
Q 004789 454 LR----GS--HLFSASGGKISIFSLETFQ--T--LATF-----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 454 ~s----~~--~l~s~sdg~I~vwd~~t~~--~--~~~~-----~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~ 516 (730)
|. |. -|++.++..+++|.+...+ . ...+ ..+..+++++.|+.-. ++.+.+-|-+..|||++++
T Consensus 104 wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 98 22 2455556689999987422 1 1111 2456789999999777 8999999999999999987
Q ss_pred c---eEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec-CCcE
Q 004789 517 K---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIH 591 (730)
Q Consensus 517 ~---~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~ 591 (730)
. ....+-.|...|..++|...+ +.+|+.+.||.+++||++.-+ ....+.+-...+ .+...++|++ |-++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~----~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPS----TPLLRLSWNKQDPNY 257 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCC----CcceeeccCcCCchH
Confidence 3 356677899999999999865 578899999999999999843 223333222222 4788999998 5567
Q ss_pred EEE-E-ecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEeec-ccccCC
Q 004789 592 LLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQP 666 (730)
Q Consensus 592 l~~-s-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~~~ 666 (730)
+|+ . ....|.|.|++.. .++..+. +|.+.|..++|.|. +..|++++.|..+.+||+..--......+ ..|.
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-- 333 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-- 333 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhh--cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--
Confidence 777 5 5567999999864 3455554 57999999999985 46899999999999999975322111110 0111
Q ss_pred CCcccceeeEEEEEecCCCCEEEEEeCCCcEEE
Q 004789 667 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 699 (730)
Q Consensus 667 gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~i 699 (730)
..+.|+ .+.|+|..+.+++.+.. +++.|
T Consensus 334 --a~~EVN--qi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 334 --AGGEVN--QIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ccceee--eeeecccCCCEEEEEec-CeeeE
Confidence 144688 99999888889998864 44443
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=170.83 Aligned_cols=273 Identities=11% Similarity=0.111 Sum_probs=210.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
||.+.|+|+.|...|.++++|+.|..++||..++..+... .. ||.+.|+.++.+ .
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs---------------------~r--Ghs~ditdlavs~~n 244 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS---------------------CR--GHSGDITDLAVSSNN 244 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc---------------------CC--CCccccchhccchhh
Confidence 6999999999999999999999999999999777665211 11 899999999999 5
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEE----c-CCCCCeE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL----K-GHQNRIT 530 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~----~-~h~~~V~ 530 (730)
-++++++ |..|++|.+.++.++..+.+|++.|++++|+|- .+.+.||++++||.+ -..+... + .....+.
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEecccc-ccccccCCCCCCccccccee
Confidence 5678888 999999999999999999999999999999996 577899999999987 1111111 1 1235567
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-cEEEEE-ecCcEEEEeCCCC
Q 004789 531 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTL 608 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-~~l~~s-~dg~I~iwd~~~~ 608 (730)
++.|..++.-+++|+.|+.-..|.+..- ..+. ..+.-+.++.+- .+.+++ .+..+.+|++.+|
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l------------~~~~---~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQL------------AWRS---NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHh------------hhhc---cceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 7888888888999999999888876541 1111 122222233232 333444 7788999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 609 NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 609 ~~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
...+... +|...+..+.++|- .+...+++.||...|||+-.|.+++.+.. || . .+. ...|++ +|..
T Consensus 386 ~l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~------gh-~-kl~--d~kFSq-dgts 452 (1113)
T KOG0644|consen 386 QLLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI------GH-G-KLV--DGKFSQ-DGTS 452 (1113)
T ss_pred hhhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec------cc-c-eee--ccccCC-CCce
Confidence 8887775 46888999999984 45566899999999999999988877652 54 2 244 789999 8999
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 004789 688 IALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 688 las~s~Dg~I~iWd~~~~~ 706 (730)
++...+-|.+.|.....++
T Consensus 453 ~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 453 IALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred EecCCCCCceEEeccCCCc
Confidence 9988888999998876654
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=6.8e-17 Score=173.24 Aligned_cols=234 Identities=22% Similarity=0.273 Sum_probs=185.6
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
+|.++|+|+.|. |.++++|+ |..++||.++++.++....+|.+.|+.++.+.+. .+++++.|..|++|.+.++.++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 799999999999 99999999 8999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec--ceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC--SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 596 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~--~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~ 596 (730)
..+.+|++.|++++|+|-. +.+.||++++||.+- .... ..+.. +.+. .-+.++.|..++..++++ .
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~--~~~~----~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLK--FTEK----DLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCC--cccc----cceeeeeccccccccccccC
Confidence 9999999999999999964 778899999999982 1111 11111 1111 356778888888888884 7
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
|+.-..|.+..... +...+.-+.++.|- .+.+++-.+-.+.+|++.+|.+...+. || ...++
T Consensus 337 d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-------gh-sd~~y- 399 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-------GH-SDEVY- 399 (1113)
T ss_pred CcccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-------cc-cccee-
Confidence 88877776542211 12222222222222 456667678889999999998777665 66 55688
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.+.+||-+.....+++.||+..|||+..|-
T Consensus 400 -vLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 400 -VLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -eeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 899999777778899999999999998774
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.2e-14 Score=138.92 Aligned_cols=271 Identities=12% Similarity=0.105 Sum_probs=187.2
Q ss_pred CCeeEeecC----CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC-----EEEEEeCCCcEEEeecCCCc
Q 004789 344 ADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-----FLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 344 g~~lat~~~----dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~-----~L~s~s~dg~I~iWd~~~~~ 414 (730)
+.+||.|+. .+.|.|-.+++. .++.....- ..|.-+++.+.|.|+.. .||++ +..+++|.+....
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~--s~e~~~~a~--fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee 132 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDED--SGELVEDAN--FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEE 132 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccC--CCceeccCC--CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcC
Confidence 456777763 377777777642 222221111 13899999999999873 34443 3479999987533
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce---EEEEEcCCCCC
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---TLATFANPPPI 487 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~---~~~~~~~~~~~ 487 (730)
.... . ...+.......+..+++++.|+ .++|.+.+ |-+..|||++++. ....+-.|...
T Consensus 133 ~~~~------------~--~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 133 SRVE------------L--QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred Ccee------------h--hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 2111 0 0000000111477899999999 77888888 9999999999863 46677899999
Q ss_pred eEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEE-c--CCCCCeEEEEEeCC-CCEEEEEeCC-CcEEEEEcCCCce
Q 004789 488 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-K--GHQNRITCLAYSLS-LNVLVSSGAD-AQLCVWDAVGWKK 560 (730)
Q Consensus 488 v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~-~--~h~~~V~~l~~spd-~~~l~s~s~d-g~I~vwd~~~~~~ 560 (730)
|..++|...+ .||+.+.||+|+++|++..+.-..+ + ....+...++|++. -+++|+-..| ..|.+.|++..
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-- 276 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-- 276 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--
Confidence 9999999987 9999999999999999876433322 2 22456778899874 4777776554 56999999873
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecC-CcEEEE-EecCcEEEEeCCCCce------eeeecCCCCCCCeEEEEEec-C
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYEAPTLNH------TSQLVPDKMDLPITYATYSC-D 631 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~-s~dg~I~iwd~~~~~~------~~~~~~~~h~~~v~~~~~sp-d 631 (730)
..++. ...+|. +.|..++|.|. ...+++ |.|..+.+||+.+.-. +..+. ..+.|..+.|++ .
T Consensus 277 --~tpva-~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 277 --CTPVA-RLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQ 347 (364)
T ss_pred --Cccee-hhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccC
Confidence 24444 467888 79999999996 456666 5888999999975322 22232 278899999995 5
Q ss_pred CCEEEEEEcCCeEEE
Q 004789 632 GKCIYVSCKSGHVKV 646 (730)
Q Consensus 632 g~~l~sgs~dg~I~i 646 (730)
+.+++.+. ++++.+
T Consensus 348 ~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 348 PDWIAICF-GKKLEI 361 (364)
T ss_pred CCEEEEEe-cCeeeE
Confidence 67777775 344433
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=8.7e-16 Score=144.83 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=177.9
Q ss_pred CCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEE
Q 004789 444 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 444 ~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
.|.+.|+++.|. ..+|++|. .|.|++|++.+......+. .+...|+.+..-|++.+.+-+.|+.+.+|++.-+..+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 588999999999 88899999 8999999999999888888 56778999998887788888999999999987532111
Q ss_pred --------------EE-------------c--------------------------CCCCCeEEEEEeC-CCC--EEEEE
Q 004789 521 --------------KL-------------K--------------------------GHQNRITCLAYSL-SLN--VLVSS 544 (730)
Q Consensus 521 --------------~~-------------~--------------------------~h~~~V~~l~~sp-d~~--~l~s~ 544 (730)
.+ . +..+.+.+..+.. ++. .+++|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 00 0 0112344444322 222 46678
Q ss_pred eCCCcEEEEEcCCCceecce----eecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ce-e-eeec
Q 004789 545 GADAQLCVWDAVGWKKLCSK----FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NH-T-SQLV 615 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~----~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~--~~-~-~~~~ 615 (730)
..+|.+.+||+.++...... .+..-...|. .+|.++.+.+.-..=++ |.+..+..|++... .+ + ....
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 88999999999986322111 1111234455 68999999864333333 45667888887532 11 1 1111
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC
Q 004789 616 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 616 ~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg 695 (730)
. ....|..+.+-||++.+|++++|+.|+||+.++..++..+.. | ...|+ +++|+| +...+|++|.|+
T Consensus 249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-------H-sagvn--~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-------H-SAGVN--AVAFSP-DCELMAAASKDA 315 (323)
T ss_pred e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-------h-hccee--EEEeCC-CCchhhhccCCc
Confidence 1 155678889999999999999999999999999999998873 3 56688 999999 789999999999
Q ss_pred cEEEEeC
Q 004789 696 RVHVIEP 702 (730)
Q Consensus 696 ~I~iWd~ 702 (730)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=7.3e-14 Score=138.12 Aligned_cols=240 Identities=15% Similarity=0.152 Sum_probs=175.1
Q ss_pred CCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCC--cEEEEecCCCceEE
Q 004789 445 PKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS--SILVHCPCTKKTKA 520 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg--~I~iwd~~~~~~~~ 520 (730)
....+..+.|+ ...|..|+....++|..+..............|.-+-|+.. ++|..+.+. .+++++.+.+..+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEE
Confidence 34566777788 44555566555677777654442222233345556667655 555555443 59999999888888
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E--ec
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HE 597 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s--~d 597 (730)
.+. ....|.++.++.+ .|+++-.+ .|+|||+++.+.. ..+.+. ..+. ..+.++++++.+.+++. + ..
T Consensus 83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklL--hTI~t~-~~n~---~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLL--HTIETT-PPNP---KGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceee--hhhhcc-CCCc---cceEeeccCCCCceEEecCCCCC
Confidence 876 5678999998754 55555444 4999999984332 222211 1122 45777777777889998 3 66
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCceEEEEeecccccCCCCcccceeeE
Q 004789 598 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELYPL 676 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 676 (730)
|.|.+||..+.+.+..+. .|.+.+-+++|+++|.+||++++.|+ ||||.+.+|+.+..+.. |.. .+++.
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~~--~~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GTY--PVSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------Cce--eeEEE
Confidence 899999999999988886 57999999999999999999999987 69999999999988864 432 34445
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 677 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 677 ~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+++|+| ++.+|++.|+.++|+||.+....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 89999999999999999998764
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=9.6e-15 Score=144.37 Aligned_cols=283 Identities=11% Similarity=0.052 Sum_probs=202.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+|.++++||+|+.|..+++|+++..........+.+.++.|...|.|++|.-..++|++|+.+++|.+-|+++.+.+.
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~ 141 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY 141 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee
Confidence 57899999999999999999999975443333344445556688999999999999999999999999999988776411
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce-E--EEEEcCCCCCeEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-T--LATFANPPPIATYF 491 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~-~--~~~~~~~~~~v~~i 491 (730)
. +. .....+.|+.+..+ ++.|++.+ ++.|.+||.+... . .............+
T Consensus 142 V----------~~-----------~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 142 V----------AN-----------ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA 200 (609)
T ss_pred e----------ec-----------ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence 1 11 01244589999988 88888888 8999999997644 1 12222345567889
Q ss_pred EEcCCC--eEEEEECCCcEEEEecCCCc-eEEE---EcCC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec
Q 004789 492 ILLPQD--LFAFGFDDSSILVHCPCTKK-TKAK---LKGH---QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 492 ~~spdg--~l~sgs~dg~I~iwd~~~~~-~~~~---~~~h---~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~ 562 (730)
.|+|-. +|++.+..+-+-+||.+... .+.. +.+. ...-.++.|+|+|+.+++--....-.+||+-+...
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~-- 278 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC-- 278 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc--
Confidence 999988 88999999999999987542 1111 1111 12225678999999998877777777888877221
Q ss_pred ceeecccccCCCC----CCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc-----------------------eeeee
Q 004789 563 SKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-----------------------HTSQL 614 (730)
Q Consensus 563 ~~~i~~~~~~h~~----~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~-----------------------~~~~~ 614 (730)
.. +...|.+ +...+.+++|..|.. +++| .+-.|++|.+.... .+..+
T Consensus 279 -~V---~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 279 -FV---LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred -ee---EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 11 2222221 012466788876654 6665 56679999875311 11223
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
.+|...+..+.|+|...+|++.+-...++||.-.
T Consensus 354 --rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 354 --RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred --ecccccccceeecCCcceEeccchhhheeccccc
Confidence 2578889999999999999999999999999743
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=2.5e-15 Score=154.14 Aligned_cols=267 Identities=10% Similarity=0.114 Sum_probs=183.0
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEe-ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLW-KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iW-d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
|...|.|+.|+.+...+.+ ++|..+.+| ++.+...........+.|.. .| +....-.
T Consensus 13 ~~e~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~---------------~h---~~~rs~~~g~ 73 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTD---------------MH---LGGRSSGGGK 73 (737)
T ss_pred cceeEEeecccccceEEEe-ccCceEEEeecccchhhhhhhCCcccCCcc---------------cc---ccccccCCCC
Confidence 8889999999998885444 555555555 44333321110000000000 11 0011111
Q ss_pred -CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
.+.|+.++ ||.+.+.+ +.++..+.+..|.+.+.|-.|+||| -|++++.||.|++|. ++|-...++.....+|.|+
T Consensus 74 ~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred CcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 23455555 99999887 4577778888999999999999999 999999999999999 5565545555567889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 611 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~ 611 (730)
+|.|+.+.++.+. .+.+.+=.+... ..+++ ...|. +-|.++.|++....+++ |.|-..++||.. |..+
T Consensus 152 ~W~p~S~~vl~c~-g~h~~IKpL~~n----~k~i~--WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ-GGHISIKPLAAN----SKIIR--WRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL 220 (737)
T ss_pred EECCCCCceEEec-CCeEEEeecccc----cceeE--EeccC---cEEEEeecCccccceeecCCceeEEeeccc-Cccc
Confidence 9999987766543 355666555441 24555 67787 79999999999999999 589999999984 6655
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
..- ..|..+|++++|.|+ +.++.++. ++++ +. ....+.|. .++|++ ||..++.|
T Consensus 221 f~S--~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~-------~p~~GSif--nlsWS~-DGTQ~a~g 274 (737)
T KOG1524|consen 221 FTS--AAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FS-------SPRVGSIF--NLSWSA-DGTQATCG 274 (737)
T ss_pred ccC--Chhccceeeeeeccc-cceeeeee-eeee------------ec-------CCCccceE--EEEEcC-CCceeecc
Confidence 433 357999999999999 55555543 2333 21 11134466 999999 99999999
Q ss_pred eCCCcEEEEeCCC
Q 004789 692 LTNGRVHVIEPLE 704 (730)
Q Consensus 692 s~Dg~I~iWd~~~ 704 (730)
+..|.+.+=-+-+
T Consensus 275 t~~G~v~~A~~ie 287 (737)
T KOG1524|consen 275 TSTGQLIVAYAIE 287 (737)
T ss_pred ccCceEEEeeeeh
Confidence 9999886644433
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.3e-14 Score=157.19 Aligned_cols=233 Identities=13% Similarity=0.068 Sum_probs=153.7
Q ss_pred CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC---CcEEEeecCCCccccccccccceeeEe
Q 004789 353 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 429 (730)
Q Consensus 353 dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~i~ 429 (730)
+..|.+||.++. ..+.++ .|...|.+.+|||||++|+.++.+ ..|++||+.++..
T Consensus 183 ~~~i~i~d~dg~----~~~~lt----~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------- 240 (429)
T PRK01742 183 PYEVRVADYDGF----NQFIVN----RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------- 240 (429)
T ss_pred eEEEEEECCCCC----CceEec----cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--------------
Confidence 478999998642 222222 377889999999999999887653 2455555433221
Q ss_pred cCCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE-ECCCc
Q 004789 430 QPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSS 507 (730)
Q Consensus 430 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg-s~dg~ 507 (730)
+.+..+.++ ..+++|+||| .|+.+ +.+|.
T Consensus 241 ----------------------------------------------~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 241 ----------------------------------------------KVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ----------------------------------------------EEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 011112222 2367999999 77665 46776
Q ss_pred EE--EEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEE
Q 004789 508 IL--VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 584 (730)
Q Consensus 508 I~--iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~ 584 (730)
+. +||+.++.. ..+..+...+.+..|+|||+.|+.++ .++...+|++..... ... .. ++. + ....
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~-~l-~~~---~--~~~~ 339 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GAS-LV-GGR---G--YSAQ 339 (429)
T ss_pred EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeE-Ee-cCC---C--CCcc
Confidence 54 557666654 45666777788999999999877655 578888887654211 111 11 222 2 4578
Q ss_pred EecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC--CceEEEEeeccc
Q 004789 585 FHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS--TLELRCQINLTA 662 (730)
Q Consensus 585 ~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~--~~~~~~~~~~~~ 662 (730)
|+|||++++......+.+||+.+++... +... ....++.|+|||++|+.++.+|.+.+|++. +|.....+.
T Consensus 340 ~SpDG~~ia~~~~~~i~~~Dl~~g~~~~-lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--- 412 (429)
T PRK01742 340 ISADGKTLVMINGDNVVKQDLTSGSTEV-LSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--- 412 (429)
T ss_pred CCCCCCEEEEEcCCCEEEEECCCCCeEE-ecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---
Confidence 9999999988544567779998887543 2221 123567899999999999999988888753 466666664
Q ss_pred ccCCCCcccceeeEEEEEec
Q 004789 663 YAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 663 ~~~~gh~~~~v~~~~v~~sp 682 (730)
+| .+.+. ..+|+|
T Consensus 413 ----~~-~g~~~--~p~wsp 425 (429)
T PRK01742 413 ----GS-DGQVK--FPAWSP 425 (429)
T ss_pred ----CC-CCCCC--CcccCC
Confidence 33 44566 889998
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=9.2e-14 Score=151.62 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=173.2
Q ss_pred CCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceE--EEEE----cCCCCCeEEEEEcCCC---eEEEEECCCcEEEE
Q 004789 445 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT--LATF----ANPPPIATYFILLPQD---LFAFGFDDSSILVH 511 (730)
Q Consensus 445 h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~--~~~~----~~~~~~v~~i~~spdg---~l~sgs~dg~I~iw 511 (730)
....|.|+.|+ ..+++.|. +|+|.+||+..+.. ...+ ..|..+++.+.|..+- .+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 56889999999 66777777 99999999987665 2222 3688899999997766 59999999999999
Q ss_pred ecCCCce-E-----EEEc------CCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCcee---cceeecccccCCCC
Q 004789 512 CPCTKKT-K-----AKLK------GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVP 575 (730)
Q Consensus 512 d~~~~~~-~-----~~~~------~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~---~~~~i~~~~~~h~~ 575 (730)
+++.-.. . .... .-...+++++|.+ +-+.++.|+.+|.|.--+-...+.. ...... ....|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~-~~~~h~- 398 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS-TFITHI- 398 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc-cccccC-
Confidence 8764322 1 1111 1234688999988 4467889999999877433332111 111121 334455
Q ss_pred CCCCeEEEEEecCCcEEE-EEecCcEEEEeCC-CCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCc
Q 004789 576 ETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 576 ~~~~v~~l~~spdg~~l~-~s~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~ 652 (730)
++|+++.++|=+..++ ++.|.+++||.-. ...++..+. .+...+++++|||.. ..++++..||.|.+||+...
T Consensus 399 --g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 399 --GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 7999999999665555 4679999999976 555655554 346679999999965 56778888999999998755
Q ss_pred eEE--EEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 653 ELR--CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 653 ~~~--~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
... ..... + ....+ .+.|++ .++.|++|+..|++++|++...
T Consensus 475 ~~~Pv~s~~~------~--~~~l~--~~~~s~-~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKV------C--SPALT--RVRWSP-NGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCcccccc------c--ccccc--eeecCC-CCcEEEEecCCCcEEEEEcCch
Confidence 432 22221 1 22234 778888 7999999999999999999643
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.4e-15 Score=147.00 Aligned_cols=198 Identities=17% Similarity=0.116 Sum_probs=150.8
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 489 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
.+++|+.+| .+++|+.||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 689999999 99999999999999988777777777899999999999999999999999 89999999963222111
Q ss_pred ccccCCCCCCCCeEEEEEecCC---cE-EEEE--ecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQ---IH-LLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg---~~-l~~s--~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~sg 638 (730)
..+.. .....+.|+.|+ .+ +++. ..+.|+.||+...+. ++....-.....|.+++.|+||++++.|
T Consensus 225 --~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 225 --PFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred --Ccccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11222 356678888876 32 3332 446677776643221 1111111125689999999999999999
Q ss_pred EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 639 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 639 s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
+.||.|-|++..+-+.+..... .| ...|+ .+.|+| +.+++++.+.|...+|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~------aH-~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE------AH-LGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh------hh-eeeee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999988877666542 34 55677 999999 899999999999999988864
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.3e-13 Score=133.89 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=186.3
Q ss_pred EEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee
Q 004789 386 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 463 (730)
Q Consensus 386 ~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s 463 (730)
-++|||+|+|+|+++.- .+.|-|.++-+. .+.+. --..|..+.|. ..+++++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~---------------------~qlf~---cldki~yieW~ads~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL---------------------HQLFL---CLDKIVYIEWKADSCHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH---------------------HHHHH---HHHHhhheeeeccceeeeeee
Confidence 47899999999999876 565655544432 22111 12456678888 55565555
Q ss_pred --CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 464 --GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 464 --dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
++.|.+|++...+-..++.....++.++.||||| .|.+...|-.|.+|.+.+.+.... +-....+..++|+|||+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCc
Confidence 8999999999999999999889999999999999 677778899999999987765432 22334567888999998
Q ss_pred EEEEEeCC------------------------------------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEE
Q 004789 540 VLVSSGAD------------------------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 540 ~l~s~s~d------------------------------------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
+.+.++.- ..+.+||.--. ..+.....+ -.+..+
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-----ykv~aYe~~-----lG~k~v 216 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-----YKVYAYERG-----LGLKFV 216 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-----heeeeeeec-----cceeEE
Confidence 87766431 12334432210 011100111 357889
Q ss_pred EEecCCcEEEEE-ecCcEEEEeCCCCceeee-------------------------------------------------
Q 004789 584 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ------------------------------------------------- 613 (730)
Q Consensus 584 ~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~------------------------------------------------- 613 (730)
+|+|.+++|++| .|+.+++.+--+.+....
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 999999999995 888887755322111110
Q ss_pred -----------ecCC----CCCCCeEEEEEecCCCEEEEEEcC--CeEEEEECCCceEEEEeecccccCCCCcccceeeE
Q 004789 614 -----------LVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 676 (730)
Q Consensus 614 -----------~~~~----~h~~~v~~~~~spdg~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 676 (730)
+++. .....+.-++||+|..++++-... +.+.+||+...++...+.. ..+|.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------k~pir-- 365 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------KHPIR-- 365 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---------cccee--
Confidence 0000 012345678999999999987654 7899999998877666552 44588
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 677 VIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 677 ~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+..|+| ....|+.+.....+++|.+...
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 999999 5667777777778999998654
No 204
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.8e-13 Score=141.98 Aligned_cols=293 Identities=11% Similarity=0.112 Sum_probs=200.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCC-eeEEEEe-
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~-V~~l~~s- 455 (730)
+|...-+.|..+|||+|+++.|. .-.|++||+..-..... + +-... |.-.-.+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE-------------------R-----hlDae~V~feiLsD 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE-------------------R-----HLDAEVVDFEILSD 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee-------------------e-----cccccceeEEEecc
Confidence 47888999999999998776555 67999999876544211 0 11122 2222222
Q ss_pred --CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEE
Q 004789 456 --GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 532 (730)
Q Consensus 456 --~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 532 (730)
.+.+.-..|.+|.+...-.......++. .-..++++.-. -|++++....|+-++++.|..+..+....+.+++|
T Consensus 105 D~SK~v~L~~DR~IefHak~G~hy~~RIP~---~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYGRHYRTRIPK---FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred chhhheEeecCceeeehhhcCeeeeeecCc---CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence 2222333355555443221111111211 12345555444 45566666789999999999999998888999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCC--CCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 609 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~--~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~ 609 (730)
..++-..+|++|+.+|.|..||.+................|.. ....|+++.|+.+|-.+++| .+|.+.|||+++.+
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 9999999999999999999999998544332222211111210 01359999999999999996 89999999999988
Q ss_pred eeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 610 HTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spd--g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
++..- .+....+|..+.|.+. +..|++. ....++|||-.+|+....+.+ ...++ .+++-| ++.+
T Consensus 262 pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---------t~~lN--D~C~~p-~sGm 327 (703)
T KOG2321|consen 262 PLLVK-DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---------TSDLN--DFCFVP-GSGM 327 (703)
T ss_pred ceeec-ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---------cCCcC--ceeeec-CCce
Confidence 87544 3345788999999765 3445444 457899999999998888764 33477 899999 7889
Q ss_pred EEEEeCCCcEEEEeCCC--Cceeeecc
Q 004789 688 IALGLTNGRVHVIEPLE--SEVEWGKL 712 (730)
Q Consensus 688 las~s~Dg~I~iWd~~~--~~~~w~~~ 712 (730)
+.+|-+++.+..|=+.. +.++|...
T Consensus 328 ~f~Ane~~~m~~yyiP~LGPaPrWCSf 354 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSLGPAPRWCSF 354 (703)
T ss_pred EEEecCCCcceeEEccccCCCchhhhH
Confidence 99999998887777653 46788863
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=1.8e-13 Score=132.86 Aligned_cols=230 Identities=11% Similarity=0.115 Sum_probs=168.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
-..+|+|.+|++|+..+|.+..+..|.||.....+. |.. .+. ...|...|++++|+ .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------w~~-----~ht--ls~Hd~~vtgvdWap~sn 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------WEP-----AHT--LSEHDKIVTGVDWAPKSN 68 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-------------cee-----cee--hhhhCcceeEEeecCCCC
Confidence 468999999999999999999999999998776652 221 111 11599999999999 88
Q ss_pred EEEEee-CCEEEEEEc-CCce--EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE----EEEcCCCCC
Q 004789 458 HLFSAS-GGKISIFSL-ETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK----AKLKGHQNR 528 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~-~t~~--~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~----~~~~~h~~~ 528 (730)
.|++|+ |..-++|.. ..++ +.-.+..++..++++.|+|.+ .|++|+....|.||-++...-- +.-+.+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 999999 999999998 4443 444556789999999999999 9999999999999887654321 122346788
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce---e------cceeecccccC--CCCCCCCeEEEEEecCCcEEEE-Ee
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK---L------CSKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLS-IH 596 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~---~------~~~~i~~~~~~--h~~~~~~v~~l~~spdg~~l~~-s~ 596 (730)
|+++.|+|++-+|++|+.|+..+++..--... . ...++..+... ..+ +.|..+.|+|+|..|+- +.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g--gwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG--GWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC--CceeeeEeCCCCCEeeEecC
Confidence 99999999999999999999999986421000 0 00111111110 122 78999999999999997 89
Q ss_pred cCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCC
Q 004789 597 EGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGK 633 (730)
Q Consensus 597 dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~ 633 (730)
|..+.+-|..... .+..... . .-+..++.|-.+..
T Consensus 227 ds~v~~~da~~p~~~v~~~~~-~-~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 227 DSTVSFVDAAGPSERVQSVAT-A-QLPLLSVSWISENS 262 (361)
T ss_pred CCceEEeecCCCchhccchhh-c-cCCceeeEeecCCc
Confidence 9999999986554 2333332 2 46677777754433
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=142.56 Aligned_cols=270 Identities=13% Similarity=0.107 Sum_probs=198.0
Q ss_pred CCCCCCCeeE-eecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 339 TSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 339 ~~spdg~~la-t~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..||||+|+. ||-.--.|++||+.+. .+.+..+-....|.-.-.+.|-..++.-..|.+|.+-.
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanL-------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-------- 122 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANL-------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-------- 122 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEcccc-------eeeeeecccccceeEEEeccchhhheEeecCceeeehh--------
Confidence 4499999876 5556688999999752 22222222345666666677766677777777776532
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C-cEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~-~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
..|.-.... -...-..++++ . .+++.|+...|+-++++.|..+..+....+.++++..+
T Consensus 123 --------------k~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 123 --------------KYGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred --------------hcCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec
Confidence 122111110 11223456666 3 34444448899999999999999999888999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcC------CCC-----CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~------h~~-----~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~ 562 (730)
+-. +|++|+.+|.|-.||.++...+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.+||+++.+
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--- 261 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--- 261 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC---
Confidence 988 999999999999999998766655532 333 39999999999999999999999999999943
Q ss_pred ceeecccccCCCCCCCCeEEEEEecC--CcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spd--g~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
++. ...|. ..-+|..+.|.+. +..+++.....++|||-.+|+....+.. ...+..+|+-|++.+++++.+
T Consensus 262 --pl~--~kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 262 --PLL--VKDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred --cee--ecccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecC
Confidence 333 22222 1157889999875 4556666778899999999998877754 667999999999999999999
Q ss_pred CCeEEEEECCCc
Q 004789 641 SGHVKVFDTSTL 652 (730)
Q Consensus 641 dg~I~iwd~~~~ 652 (730)
++.+..|-+..-
T Consensus 334 ~~~m~~yyiP~L 345 (703)
T KOG2321|consen 334 SSKMHTYYIPSL 345 (703)
T ss_pred CCcceeEEcccc
Confidence 998888776543
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6e-13 Score=131.09 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=186.8
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---Cc
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 457 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~ 457 (730)
.-.+..++|++.-..+|++..|..|++|+-..... ..++ ......|.|++|- +.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-------------------t~Lk----s~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-------------------TKLK----SVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-------------------ceec----chhhcceeEEEeccCCcc
Confidence 45677899999777789999999999998654221 0111 1245789999999 77
Q ss_pred EEEEeeCCEEEEEEcCCc----eEE--------E--EEcCCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEecCCCceEEE
Q 004789 458 HLFSASGGKISIFSLETF----QTL--------A--TFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK 521 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~----~~~--------~--~~~~~~~~v~~i~~spdg-~l~sgs~-dg~I~iwd~~~~~~~~~ 521 (730)
.|+.|+.+-|.+|..... ..+ . ..++| ..|+++.|.+|| .+++++. |..|.|||+.++..+.-
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 899999889999986431 111 1 11233 589999999999 8888875 56899999999977655
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcE
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 600 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~-~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I 600 (730)
.....+.++-+.|+|||.+|++++-|+..++|+... +... . ...+. +.|...+|+|+|++|+.+..|.-
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e-----r-w~lgs----grvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE-----R-WILGS----GRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec-----c-eeccC----CceeeeeecCCCCEEEEEEcCCc
Confidence 534557788999999999999999999999995543 2211 1 11221 57999999999999988655555
Q ss_pred EEEeCCCC-ce--------------eeeec-----CC--CCCCCeEEEEEecCCCEEEEEEcCC--------eEEEEECC
Q 004789 601 DVYEAPTL-NH--------------TSQLV-----PD--KMDLPITYATYSCDGKCIYVSCKSG--------HVKVFDTS 650 (730)
Q Consensus 601 ~iwd~~~~-~~--------------~~~~~-----~~--~h~~~v~~~~~spdg~~l~sgs~dg--------~I~iwd~~ 650 (730)
++|.+.-. +. +..+. .+ --.+.+.+++|.|.|.+|++....+ .|.+||..
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 55554311 00 00000 00 0156788999999999999876543 36677766
Q ss_pred CceEEEEeecccccCCCCcccceeeEEEEEec--CCCCEEEEEeCCCcEEEEeCC
Q 004789 651 TLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 651 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp--~~~~~las~s~Dg~I~iWd~~ 703 (730)
..-.+.... -.+.. |. . +-.++|+| .++.+|..|=..|.+.-|++.
T Consensus 384 ~sp~vels~-cg~i~-ge--~---P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 384 KSPPVELSY-CGMIG-GE--Y---PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCceEEEe-ccccc-CC--C---CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 543322221 11111 11 1 22455554 345567777677887777664
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.7e-14 Score=145.17 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=156.1
Q ss_pred eEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC-
Q 004789 450 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 524 (730)
Q Consensus 450 ~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~- 524 (730)
.+++|+ |..+++++ ||.+++|+......+.....|...|.++.|+||| .|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678888 79999999 9999999988888888888899999999999999 99999999 999999999976665542
Q ss_pred -CCCCeEEEEEeCCC---C--EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec
Q 004789 525 -HQNRITCLAYSLSL---N--VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 597 (730)
Q Consensus 525 -h~~~V~~l~~spd~---~--~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d 597 (730)
.......+.|+.|+ . ..+.....+.|+.||+..+.........+....+ ..|++++.+++|++++.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 23445677888776 3 3333445677888888765432122222223333 379999999999999995 89
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 598 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
|.|.|++..+.+.++..+ +.|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998888876655 46899999999999999999999999888887654
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.4e-13 Score=151.05 Aligned_cols=207 Identities=17% Similarity=0.101 Sum_probs=144.3
Q ss_pred CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEecCCCce--EEEEcCCCCCeEEEEEeCC
Q 004789 464 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d---g~I~iwd~~~~~~--~~~~~~h~~~V~~l~~spd 537 (730)
+..|.+||..... .+.+..+...+.+.+|+||| .|+.++.+ ..|++||+.+++. +..+.+ ...+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 3689999986544 55677788889999999999 77777644 3699999988754 333333 3447899999
Q ss_pred CCEEEEEe-CCCcEEEE--EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC-cee
Q 004789 538 LNVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-NHT 611 (730)
Q Consensus 538 ~~~l~s~s-~dg~I~vw--d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~-~~~ 611 (730)
|+.|+.++ .+|.+.+| |+.++.. ..+ ..+. ..+...+|+|||+.|+. + .+|...||++... ...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~------~~l-t~~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP------SQL-TSGA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe------Eee-ccCC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 99888764 57765555 6655321 112 2233 45778999999998886 4 4677777776432 222
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
..+ . +.. ....|+|||++|+.++.++ +.+||+.+++...... +. ... .++|+| ++++|+++
T Consensus 329 ~~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~---~~~--~~~~sP-dG~~i~~~ 389 (429)
T PRK01742 329 SLV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------TF---LDE--SPSISP-NGIMIIYS 389 (429)
T ss_pred EEe-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------CC---CCC--CceECC-CCCEEEEE
Confidence 222 2 122 4578999999998887755 6669999887543322 11 123 678999 89999999
Q ss_pred eCCCcEEEEeCC
Q 004789 692 LTNGRVHVIEPL 703 (730)
Q Consensus 692 s~Dg~I~iWd~~ 703 (730)
+.+|.+.+|.+.
T Consensus 390 s~~g~~~~l~~~ 401 (429)
T PRK01742 390 STQGLGKVLQLV 401 (429)
T ss_pred EcCCCceEEEEE
Confidence 999999988864
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=3.8e-14 Score=145.55 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=155.6
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
....++.+++||.+.|-+-.+ .+-+.. ..|.+.|.+-.|+|||.-|++++.||.|++|.-...
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~-----rVE~sv---~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------- 136 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSA-----RVERSI---SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------- 136 (737)
T ss_pred CcceEEEEcCCceEEEecccc-----hhhhhh---hhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---------
Confidence 446788889999998877643 111111 239999999999999999999999999999974322
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eE
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 499 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l 499 (730)
+..+.. ....+|+|++|. .+-++.+..+.+.+=.+.....+-.++.|.+-|.++.|++.+ .+
T Consensus 137 -------------LRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 137 -------------LRSTVV--QNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred -------------HHHHHh--hcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 111111 367899999999 666677777778887777777777888999999999999999 99
Q ss_pred EEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCC
Q 004789 500 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 579 (730)
Q Consensus 500 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~ 579 (730)
++|+.|...++||.. |..+..-..|..+|++++|+|+ ..++.++. .+.++ . .... +.
T Consensus 202 ~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~--------------~---~p~~---GS 258 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF--------------S---SPRV---GS 258 (737)
T ss_pred eecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeee--------------c---CCCc---cc
Confidence 999999999999965 6777777779999999999999 55555542 33331 1 1111 68
Q ss_pred eEEEEEecCCcEEEEE-ecCcE
Q 004789 580 VNHIQFHPDQIHLLSI-HEGQI 600 (730)
Q Consensus 580 v~~l~~spdg~~l~~s-~dg~I 600 (730)
|..++||+||..+++| ..|.+
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred eEEEEEcCCCceeeccccCceE
Confidence 9999999999999985 56654
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=5.3e-13 Score=129.68 Aligned_cols=240 Identities=13% Similarity=0.196 Sum_probs=165.1
Q ss_pred CeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCC--eEEEEEcCCCeEEEEECC------CcEEEEecCCCc
Q 004789 448 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPI--ATYFILLPQDLFAFGFDD------SSILVHCPCTKK 517 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~--v~~i~~spdg~l~sgs~d------g~I~iwd~~~~~ 517 (730)
...+++|+ ..-+++|.|.-.+||+.+-.+....-..+.+. +.-+-|-.+-..++|+.+ +.|.|||=...+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34458888 55567777888999998764433222222222 222333222144455544 379999966667
Q ss_pred eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-
Q 004789 518 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I- 595 (730)
Q Consensus 518 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s- 595 (730)
++.++. ...+|.++.+.++ .|++. ..+.|+||.....- .....+. +... | ....+++-+.+..+||. |
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~-k~l~~~e-t~~N--P--kGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP-KLLHVIE-TRSN--P--KGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh-hheeeee-cccC--C--CceEeecCCCCceEEEcCCC
Confidence 777776 6788999999876 45544 36799999987521 1112232 1111 1 23444444445555665 6
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCceEEEEeecccccCCCCccccee
Q 004789 596 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELY 674 (730)
Q Consensus 596 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 674 (730)
.-|.|+|-|+...+.-.......|...|.+++.+.+|..||++|..|+ |+|||..+|+++..+.. |.....|+
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~iy 230 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADIY 230 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheEE
Confidence 679999999976655212222368999999999999999999999997 79999999999998763 55455688
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 675 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 675 ~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+++||| +..+||++|+.|+|+||.+....
T Consensus 231 --~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 231 --CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred --EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 999999 89999999999999999998643
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=141.11 Aligned_cols=242 Identities=15% Similarity=0.200 Sum_probs=166.5
Q ss_pred eeEEEEe--CcEEEEeeCCEEEEEEcCCceEEE----EEcCCCCCeEEEEE-----cCCC-eEEEEECCCcEEEEecCCC
Q 004789 449 ISCFALR--GSHLFSASGGKISIFSLETFQTLA----TFANPPPIATYFIL-----LPQD-LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 449 V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~----~~~~~~~~v~~i~~-----spdg-~l~sgs~dg~I~iwd~~~~ 516 (730)
+....++ |++|+..-...+++|+.+.+..+. ...-.....+|-+| .|.+ -+++|-.-|.|.+.|....
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3444444 777777777788888877432221 11111111223333 4666 8889999999999997764
Q ss_pred ceEEEEc----CCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCcee---c--------c------------eeecc
Q 004789 517 KTKAKLK----GHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKL---C--------S------------KFLHS 568 (730)
Q Consensus 517 ~~~~~~~----~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~---~--------~------------~~i~~ 568 (730)
+..+.+. -....|+++.|-|.+ ..++++-.+|.+++||..--... . . .++..
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 3222221 134789999999854 45666778999999976321000 0 0 01110
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
...+ .+.|..++|+|||++||+ +.||.++|||..+.+++..++. .-+...|++|||||+||++|++|.-|.||
T Consensus 286 w~~~----~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 286 WHIG----EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred eEec----cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEE
Confidence 1111 157889999999999998 8999999999988877665543 36789999999999999999999999999
Q ss_pred ECCCceEEEEeecccccCCCCcccceeeEEEEEecC----------------------------------CC--------
Q 004789 648 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------EP-------- 685 (730)
Q Consensus 648 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~----------------------------------~~-------- 685 (730)
.+..++.+..-. || ..+|. .|+|.|- ++
T Consensus 360 Sf~erRVVARGq-------GH-kSWVs--~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~ 429 (636)
T KOG2394|consen 360 SFEERRVVARGQ-------GH-KSWVS--VVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNR 429 (636)
T ss_pred EeccceEEEecc-------cc-cccee--eEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccc
Confidence 999998887754 65 66777 7777620 01
Q ss_pred -----CEEEEEeCCCcEEEEeCCCCc
Q 004789 686 -----NRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 686 -----~~las~s~Dg~I~iWd~~~~~ 706 (730)
-.|.+.+.|-.+.+||+....
T Consensus 430 ~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 430 INSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccceEEEeecccccceEEEEecchhh
Confidence 247788899999999997653
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=1.8e-13 Score=132.86 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=158.6
Q ss_pred CCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCc---eEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-
Q 004789 445 PKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK- 516 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~---~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~- 516 (730)
-..+|+|.+|+ +..+|.+. ...|.||..... +..+++..|...|++++|+|.. .|++|+.|..-++|...++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35789999999 66788877 779999988654 4678899999999999999999 9999999999999998443
Q ss_pred --ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 517 --KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 517 --~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
++.-.+..+...++++.|+|.++.+++|+....|.||-......- -.-+.+...+. ..|+++.|+|++-.+++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPir---Stv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIR---STVTSLDWHPNNVLLAA 163 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--ehhhhhCCccc---cceeeeeccCCcceecc
Confidence 344455568899999999999999999999999999988763211 00010122222 68999999999999998
Q ss_pred -EecCcEEEEeCC-----C-------------CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 595 -IHEGQIDVYEAP-----T-------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 595 -s~dg~I~iwd~~-----~-------------~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
+.|+.++++..- . |+++..+. ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 489999888642 1 12222232 237889999999999999999999999999987664
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=7e-13 Score=148.60 Aligned_cols=270 Identities=13% Similarity=0.104 Sum_probs=183.9
Q ss_pred eEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCC-------ceEEEEEcCCCCCeEEEEEcC
Q 004789 427 QLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 427 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t-------~~~~~~~~~~~~~v~~i~~sp 495 (730)
.-|+++. .++.... .|...|..++.+ +.++++|+ ||+|++|+... .+...++..-...+.++...+
T Consensus 1032 ~gW~p~G-~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1032 PGWNPRG-ILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred CCCCccc-eEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 3466553 3444333 588899999988 58999999 99999999853 233444544567889999999
Q ss_pred CC-eEEEEECCCcEEEEecCCC--c-----eEEEEcC-CCCCeEEE-EEeC-CCC-EEEEEeCCCcEEEEEcCCCceecc
Q 004789 496 QD-LFAFGFDDSSILVHCPCTK--K-----TKAKLKG-HQNRITCL-AYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~--~-----~~~~~~~-h~~~V~~l-~~sp-d~~-~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
.+ .+|+++.||.|++.++... . +.+.... ..+.+.++ +|.. ++. .++.+..-+.|..||+++.....
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w- 1187 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW- 1187 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-
Confidence 99 9999999999999998762 1 1111121 12333333 3433 233 67788888999999999843221
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC---CCEEEEEE
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD---GKCIYVSC 639 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~l~sgs 639 (730)
.++ ....| |.|++++.+|.+.+++.| ..|.+.+||++=+.++..+..+ +..++..++.+|- ....++++
T Consensus 1188 -~lk-~~~~h----G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1188 -RLK-NQLRH----GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred -hhh-cCccc----cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEec
Confidence 122 12223 689999999999999997 7899999999988888888653 4688888887753 34554444
Q ss_pred --cCCeEEEEECCCceEEEEeecc-------cccCCCC--cccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 640 --KSGHVKVFDTSTLELRCQINLT-------AYAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 640 --~dg~I~iwd~~~~~~~~~~~~~-------~~~~~gh--~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
..+.|.+|++.+|....++... ...|... ....+.....++.. .+..+.+|+.|+.||.||...++.-
T Consensus 1261 ~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccc
Confidence 4688999999999777666543 1112110 01111112233333 4678999999999999999887643
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=147.28 Aligned_cols=278 Identities=12% Similarity=0.131 Sum_probs=215.0
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 460 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~ 460 (730)
.-..+.++.+|++|+.|+..|.+-.+|+.+...... + .-...|.++.|- .+++|
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---------------------i---~v~Etv~Dv~~LHneq~~A 186 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---------------------I---NVMETVRDVTFLHNEQFFA 186 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeee---------------------e---ehhhhhhhhhhhcchHHHH
Confidence 346789999999999999999999999887765211 0 245678888888 67788
Q ss_pred EeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 461 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 461 s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
++....++|||-. |..+..++.| ..|..+.|.|.. +|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-+.
T Consensus 187 VAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 187 VAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred hhhhceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 8889999999954 6777776644 457799999999 999999999999999999999999988888999999999888
Q ss_pred EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC
Q 004789 540 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK 618 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~ 618 (730)
.+-+|...|+|.+|...+. .++. -...|. ++|.++++.++|+|+++ |.|..++|||+++...+.++..
T Consensus 265 Vih~GhsnGtVSlWSP~sk-----ePLv-KiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-- 333 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSK-----EPLV-KILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-- 333 (545)
T ss_pred eEEEcCCCceEEecCCCCc-----chHH-HHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec--
Confidence 8889999999999999883 3444 244566 79999999999999999 7999999999999887777754
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEE-CCCceEEEEeecccccCCCC-cccceeeEEEEEecCCCCEEEEEeCCCc
Q 004789 619 MDLPITYATYSCDGKCIYVSCKSGHVKVFD-TSTLELRCQINLTAYAQPGT-ISLELYPLVIAAHPLEPNRIALGLTNGR 696 (730)
Q Consensus 619 h~~~v~~~~~spdg~~l~sgs~dg~I~iwd-~~~~~~~~~~~~~~~~~~gh-~~~~v~~~~v~~sp~~~~~las~s~Dg~ 696 (730)
..+...+++|..| +++.+....|.||. .-.+..-... +|. .| ..+.|. .+.|.| ....|..|...|-
T Consensus 334 -p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~---pYm--~H~~~~~V~--~l~FcP-~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 334 -PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET---PYM--NHRCGGPVE--DLRFCP-YEDVLGIGHAGGI 402 (545)
T ss_pred -CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc---chh--hhccCcccc--cceecc-HHHeeeccccCCc
Confidence 4566778888665 44444667899995 2221110100 111 11 133566 899999 7788888888887
Q ss_pred EEEEeCCCCcee
Q 004789 697 VHVIEPLESEVE 708 (730)
Q Consensus 697 I~iWd~~~~~~~ 708 (730)
-.|.-+-.|++.
T Consensus 403 tsilVPGsGePN 414 (545)
T KOG1272|consen 403 TSILVPGSGEPN 414 (545)
T ss_pred eeEeccCCCCCC
Confidence 777777777664
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.4e-12 Score=128.53 Aligned_cols=287 Identities=11% Similarity=0.040 Sum_probs=179.6
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC-EEEEEeCCCcEEEeecCCCcccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVN 423 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~~~~~~~~~~~~~~ 423 (730)
.-+|++..|.+||+|+-+.. ....++ +.....|+|++|-|.+. -|+.|+ -+.|.+|..........
T Consensus 111 ~~fava~nddvVriy~ksst----~pt~Lk---s~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r----- 177 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSST----CPTKLK---SVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANR----- 177 (445)
T ss_pred hhhhhhccCcEEEEeccCCC----CCceec---chhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccccc-----
Confidence 34677999999999998641 111222 12467899999999665 455554 45689998754332100
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 498 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~ 498 (730)
..+ ..+....+.....+| .+|+++.|. |..+++++ |..|.|||+.++..+.......+.++-+.||||| .
T Consensus 178 -~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 178 -NIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred -ccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 000 001111111122245 789999999 88899998 7899999999998877766667789999999999 9
Q ss_pred EEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce----e------cceeec-
Q 004789 499 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK----L------CSKFLH- 567 (730)
Q Consensus 499 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~----~------~~~~i~- 567 (730)
|+++.-|+..++|+.........+....+.|....|+|+|+.|+.+.. |.-++|.+..... . ....+.
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 999999999999965443222333334569999999999988765543 3334554432110 0 000000
Q ss_pred ----ccccCCCCCCCCeEEEEEecCCcEEEEEe---c------CcEEEEeCCCCceeeeec-CCCCCCCeEEEEEec---
Q 004789 568 ----SFQTGLVPETTIVNHIQFHPDQIHLLSIH---E------GQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSC--- 630 (730)
Q Consensus 568 ----~~~~~h~~~~~~v~~l~~spdg~~l~~s~---d------g~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~~sp--- 630 (730)
++..+..--.+.+.+++|.|.|.+|++.. + +.|.+||.+..-.+.-.. +........-++|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 01111100015788999999999999852 2 237788876554433221 111123345566665
Q ss_pred CCCEEEEEEcCCeEEEEECC
Q 004789 631 DGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 631 dg~~l~sgs~dg~I~iwd~~ 650 (730)
+|.+|..+-..|.+.-|++.
T Consensus 412 ~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCcEEEEEeccCceEeeeeE
Confidence 56777777677877777654
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=6.1e-12 Score=133.76 Aligned_cols=316 Identities=12% Similarity=0.087 Sum_probs=193.8
Q ss_pred eEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccccee
Q 004789 347 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 426 (730)
Q Consensus 347 lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~ 426 (730)
+++-..+|.|.+.|... .....++.. ..+.-..+.|+|||+++++++.||.|.++|+.+.+....
T Consensus 9 ~V~~~~~~~v~viD~~t---~~~~~~i~~----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-------- 73 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT---NKVVARIPT----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-------- 73 (369)
T ss_dssp EEEEGGGTEEEEEETTT----SEEEEEE-----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE--------
T ss_pred EEEecCCCEEEEEECCC---CeEEEEEcC----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE--------
Confidence 34566789999999863 222333331 222334578999999999999999999999887765221
Q ss_pred eEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCC-------CCCeEEEEEcC
Q 004789 427 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-------PPIATYFILLP 495 (730)
Q Consensus 427 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~-------~~~v~~i~~sp 495 (730)
.. -.....+++++ |+++++++ .+.+.++|.++.+.++.+... ...+..+..+|
T Consensus 74 -------------i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 74 -------------IK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp -------------EE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred -------------Ee---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 11 23456788888 89998887 799999999999999987643 34677888888
Q ss_pred CC-eEEEEEC-CCcEEEEecCCCceEE-EEcCCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCceecceeeccccc
Q 004789 496 QD-LFAFGFD-DSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 496 dg-~l~sgs~-dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~spd~~~l~s~-s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
.. .++..-. .+.|.+.|....+.+. .............|+|++++++++ ..+..|-++|..+++........ ..
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g--~~ 215 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--KK 215 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--SS
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc--cc
Confidence 88 5555555 4788888977654332 222244567789999999987664 56778999999986543221111 11
Q ss_pred CCCCCCCCeEEE-------EEe--cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE---
Q 004789 572 GLVPETTIVNHI-------QFH--PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--- 638 (730)
Q Consensus 572 ~h~~~~~~v~~l-------~~s--pdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sg--- 638 (730)
.|. .++..+ .|. ..+...++ -..+.+.+||..+.+.++++... ..+ .-+..+|+++++++.
T Consensus 216 p~~---~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 216 PHP---GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp BEE---TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT
T ss_pred ccc---cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccC
Confidence 111 222222 122 12333323 24456778999999999999764 344 777889999999988
Q ss_pred -EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCceeeec
Q 004789 639 -CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 639 -s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s--~Dg~I~iWd~~~~~~~w~~ 711 (730)
...+.|.++|..+.+.+..+... . ...+. .+.|++ +|+.+..+. .+|.|.|||..+.+..-..
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~------~-~~~~~--h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPG------P-GKRVV--HMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHH------H-T--EE--EEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEECcCcceeEEEecc------C-CCcEe--ccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 44589999999999877776531 0 11244 899999 788654433 3347999999998765443
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=3.8e-13 Score=130.77 Aligned_cols=303 Identities=14% Similarity=0.108 Sum_probs=198.3
Q ss_pred CCCCCCCeeEe-ecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEE-EEeCCCcEEEeecCCCccc
Q 004789 339 TSLPDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 339 ~~spdg~~lat-~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~-s~s~dg~I~iWd~~~~~~~ 416 (730)
....|.-++.. ...|+.|.+|++... .-.-++. .-.+++.+++|||||+.++ +...+-.|.||.+.+...
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckId----eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~- 126 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKID----EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG- 126 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecc---eeEEEec----cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-
Confidence 44566666654 457889999999631 1111111 1578899999999997555 555588999998866543
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--C--CEEEEEEcCCceEEEEEcCCCCCeEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATY 490 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--d--g~I~vwd~~t~~~~~~~~~~~~~v~~ 490 (730)
..++ .....+..++|+ |++.+.++ | ..+.+..-.....++.+...+-..+.
T Consensus 127 ------------------~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 127 ------------------YLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred ------------------EEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 1222 234556788888 88877777 3 23444433444555666666777889
Q ss_pred EEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec-------
Q 004789 491 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC------- 562 (730)
Q Consensus 491 i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~------- 562 (730)
+.|+||| .|++ ||---.-.+..+. ..-.+..++|+|.+++|+.|+.|+.+++.+--+++...
T Consensus 184 ieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s 253 (447)
T KOG4497|consen 184 IEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS 253 (447)
T ss_pred ceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence 9999998 6554 4422111111222 22457889999999999999999999886543321100
Q ss_pred --------------------------------------c--------e--eeccc--ccCCCCCCCCeEEEEEecCCcEE
Q 004789 563 --------------------------------------S--------K--FLHSF--QTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 563 --------------------------------------~--------~--~i~~~--~~~h~~~~~~v~~l~~spdg~~l 592 (730)
. . .++.. ........-.+.-++|++|..++
T Consensus 254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~ 333 (447)
T KOG4497|consen 254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA 333 (447)
T ss_pred ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE
Confidence 0 0 00000 00000011346679999999999
Q ss_pred EEEec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc
Q 004789 593 LSIHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 593 ~~s~d---g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
++-.| +.+.+||++..+....+.. ..+|....|.|....|+.+.....+++|.......+..-.
T Consensus 334 aTrnd~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~---------- 400 (447)
T KOG4497|consen 334 ATRNDKYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK---------- 400 (447)
T ss_pred eeecCCCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC----------
Confidence 99544 5699999988776655542 7889999999998888888888889999987755444321
Q ss_pred ccceeeEEEEEecCCCCEEEEEeCCCcE
Q 004789 670 SLELYPLVIAAHPLEPNRIALGLTNGRV 697 (730)
Q Consensus 670 ~~~v~~~~v~~sp~~~~~las~s~Dg~I 697 (730)
.+ .++..+.|+- +|..++.++.|...
T Consensus 401 ~G-F~i~~l~W~~-~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 401 KG-FNIQKLQWLQ-PGEFIVLCGKDAFC 426 (447)
T ss_pred CC-ceeeeEEecC-CCcEEEEEcCCceE
Confidence 11 3344999998 78999999988643
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.5e-14 Score=143.88 Aligned_cols=287 Identities=14% Similarity=0.070 Sum_probs=208.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC--CCEEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd--g~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
..+...|..|++|+.|..|.+||+.... . .+.+. .||...|....|-|. .+.+++++.||.+++=.+....
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~---~--~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~- 220 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGS---P--KLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG- 220 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccC---c--ccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeecccc-
Confidence 4788899999999999999999996321 2 22222 479999999999983 3569999999999985543222
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEc---CCCC--
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA---NPPP-- 486 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~---~~~~-- 486 (730)
.+..+.....|.++|..++.- ..-|.+++ |+.+.-+|+.++.....+. .+..
T Consensus 221 -------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 221 -------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred -------------------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 222122223589999999888 55688888 9999999998765544332 2333
Q ss_pred -CeEEEEEcCCC--eEEEEECCCcEEEEecCCCc------eEEEEcC------CCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 004789 487 -IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLKG------HQNRITCLAYSLSLNVLVSSGADAQLC 551 (730)
Q Consensus 487 -~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~------~~~~~~~------h~~~V~~l~~spd~~~l~s~s~dg~I~ 551 (730)
....++..|.. .+++|+.|..+++||.+.-. .+..+.. ....|++++|+.++.-|++...|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 56889999988 99999999999999976432 1233322 235689999998887777778888999
Q ss_pred EEEcCCCcee-------cceeecccccCCCCCCCCeEEEEE-ecCCcEEEEEe-cCcEEEEeCCCCceeeeecCCCCCCC
Q 004789 552 VWDAVGWKKL-------CSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLP 622 (730)
Q Consensus 552 vwd~~~~~~~-------~~~~i~~~~~~h~~~~~~v~~l~~-spdg~~l~~s~-dg~I~iwd~~~~~~~~~~~~~~h~~~ 622 (730)
++.-.-+... ....++...+||... ..|..+-| -|...|+++|+ -|.|.||+-.+++.++.+.+.. ..
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr--~V 438 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR--HV 438 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc--ce
Confidence 9954332210 002223246777632 33666665 67788999875 4889999999999988887653 38
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 623 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 623 v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
|.|+.-+|--..||+.+-|..|+||...+.+
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecCCccc
Confidence 9999999999999999999999999875544
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.3e-11 Score=120.25 Aligned_cols=236 Identities=12% Similarity=0.099 Sum_probs=164.9
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCC--CeeEEEEeCcEEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD--SISCFALRGSHLF 460 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~--~V~~l~~s~~~l~ 460 (730)
...+++|+.|...+++|..+| .+||+.+.-+.... .+ .+.+ .+..+-|-.++|+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~------------------r~-----~~~~G~~~veMLfR~N~la 62 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS------------------RQ-----FIDGGFKIVEMLFRSNYLA 62 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh------------------hc-----cccCchhhhhHhhhhceEE
Confidence 345599999999877776665 78888765333111 00 0111 1222222255555
Q ss_pred Eee--C------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCC-CceEEEEcCCC--CCe
Q 004789 461 SAS--G------GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ--NRI 529 (730)
Q Consensus 461 s~s--d------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~--~~V 529 (730)
-.+ + +.|.|||-...+++.++. ...+|.++.+.++ .|++.- .+.|+||...+ -+.++.+.... ...
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~-riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl 139 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD-RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL 139 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC-eEEEEe-cCeEEEEEcCCChhheeeeecccCCCce
Confidence 433 2 479999977777777775 5678999999988 444443 56899999874 46666664322 223
Q ss_pred EEEEEeCCCCEEEE-EeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCc-EEEEeCC
Q 004789 530 TCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ-IDVYEAP 606 (730)
Q Consensus 530 ~~l~~spd~~~l~s-~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~-I~iwd~~ 606 (730)
.++.-+.+...||. |-.-|.|.|-|+...+.. . ..+...|. +.|.+++.+.+|..+|+ +..|+ |||||..
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~---~-p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN---A-PSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcC---C-ceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 33322223344554 445699999999873321 1 12466788 79999999999999999 46676 9999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
+|..+..++-+.....|.+++||||+.+|+++|+.|+|+||.+...
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999987766889999999999999999999999999998763
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=1.6e-14 Score=146.26 Aligned_cols=268 Identities=10% Similarity=0.151 Sum_probs=201.8
Q ss_pred CcccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 335 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 335 ~~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
.....++-+|..|+.|+.-|.|-.+|+...... ..+. -...|.++.|-.+.+++|++- ...+.|||-..-+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---~Ei~-----v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---FEIN-----VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE 202 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceee---eeee-----hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE
Confidence 355688999999999999999999999632111 1111 256799999999999877764 4578888754433
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE-EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEE
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYF 491 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~-l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i 491 (730)
. .|++ ....|..+.|- -.+ |++++ .|.++--|+.+|+.+..+....+.+..+
T Consensus 203 l-------------------HClk------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm 257 (545)
T KOG1272|consen 203 L-------------------HCLK------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM 257 (545)
T ss_pred E-------------------eehh------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh
Confidence 2 0221 34567788888 444 56666 7999999999999999999888999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
.-+|-+ .+-+|...|+|.+|...+.+++..+..|.++|.+|++.++|++++|++.|..++|||++... .+.+..
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-----ql~t~~ 332 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-----QLHTYR 332 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-----ccceee
Confidence 999999 99999999999999999999998888999999999999999999999999999999999843 223222
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC-C--CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-T--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~-~--~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
.. -+...+++|..| .||.|....+.||.-. . +..-..+..+...++|..+.|.|-...|-.|...|.-.+.
T Consensus 333 tp-----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 333 TP-----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred cC-----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 22 356788888665 5666777789999522 2 1222223333336789999999987777777666544443
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.3e-12 Score=139.78 Aligned_cols=215 Identities=10% Similarity=0.020 Sum_probs=148.4
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
..|.++|.. +...+.+..+...+.+.+|+||| .|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378899985 44556667788899999999999 7776653 458999999888653 44456667788999999988
Q ss_pred EE-EEeCCCc--EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe--c--CcEEEEeCCCCceeee
Q 004789 541 LV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--E--GQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 541 l~-s~s~dg~--I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~--d--g~I~iwd~~~~~~~~~ 613 (730)
|+ +.+.++. |++||+.++.. .. + ..+. +......|+|||+.++... + ..|++||+.++... .
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~---~~---L-t~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT---TR---L-TDSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce---EE---c-cCCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence 76 4455554 77789887532 11 1 2222 3466789999999988742 2 35889998765543 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+.. +...+....|+|||++|+..+.+ ..|.+||+.++.. ..+.. +. .+. ...|+| |+++|+.
T Consensus 329 lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------~~---~~~--~p~~sp-DG~~i~~ 393 (435)
T PRK05137 329 ISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------GF---LVE--GPTWAP-NGRVIMF 393 (435)
T ss_pred eec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------CC---CCC--CCeECC-CCCEEEE
Confidence 332 14456678899999999877654 3688899876543 23321 21 244 789999 8888876
Q ss_pred EeCC------CcEEEEeCCCCce
Q 004789 691 GLTN------GRVHVIEPLESEV 707 (730)
Q Consensus 691 ~s~D------g~I~iWd~~~~~~ 707 (730)
.+.+ ..+.++++..+..
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce
Confidence 5543 2577888866544
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.2e-12 Score=139.97 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=112.6
Q ss_pred eEEEEEcCCC-eEEEE-ECCC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 004789 488 ATYFILLPQD-LFAFG-FDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQ--LCVWDAVGWKK 560 (730)
Q Consensus 488 v~~i~~spdg-~l~sg-s~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-g~--I~vwd~~~~~~ 560 (730)
+....|+||| .|+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ +. |+++|+.+++.
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 3467899999 66644 4455 59999999887644 44345567889999999998877654 44 55557766432
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee-c--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~-d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
..+. ..+ .......|+|||++++. +. + ..|++||+.+++.. .+.. ........|+|||++|+
T Consensus 324 ---~~lt--~~~-----~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 324 ---QRIT--WEG-----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVI 389 (429)
T ss_pred ---EEee--cCC-----CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEE
Confidence 1121 111 24567899999999987 42 2 35889999877643 4432 12234678999999999
Q ss_pred EEEcCCe---EEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 637 VSCKSGH---VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 637 sgs~dg~---I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
.++.++. +++++++.+ ....+. +| .+.+. ..+|+|
T Consensus 390 ~~s~~~~~~~l~~~~~~G~-~~~~l~-------~~-~~~~~--~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGR-FKARLP-------AT-DGQVK--FPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEECCCC-CeEECc-------cC-CCCcC--CcccCC
Confidence 8888754 778888544 344443 33 44566 788887
No 224
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.1e-13 Score=140.59 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=157.8
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC---eEEEEECCCcEEEEecCCC
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~ 516 (730)
||++.|+|+.|+ |.+|++|+ |-.+.|||.-..+.+..+. +|...|.++.|-|.. .+++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999 99999999 7899999999888888775 899999999999865 8999999999999999842
Q ss_pred ----------ceEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceec-ceeecccccCCCCCCCCeEEEE
Q 004789 517 ----------KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQ 584 (730)
Q Consensus 517 ----------~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~-~~~i~~~~~~h~~~~~~v~~l~ 584 (730)
.....+..|...|..++..|++ +.+.+++.||+|+-+|++....-. ............+..-...++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 3445567799999999999998 788999999999999998721100 0000000000000002456899
Q ss_pred EecCC-cEEEEE-ecCcEEEEeCCC--------Cc----------eeeeecCCCCC-----------CCeEEEEEecCCC
Q 004789 585 FHPDQ-IHLLSI-HEGQIDVYEAPT--------LN----------HTSQLVPDKMD-----------LPITYATYSCDGK 633 (730)
Q Consensus 585 ~spdg-~~l~~s-~dg~I~iwd~~~--------~~----------~~~~~~~~~h~-----------~~v~~~~~spdg~ 633 (730)
++|.. .+|++| .|-..++||.+. +. +++-+.+ +|. ..++-++|+|+|.
T Consensus 208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p-~hlkn~~gn~~~~~~~~t~vtfnpNGt 286 (758)
T KOG1310|consen 208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP-GHLKNSQGNLDRYITCCTYVTFNPNGT 286 (758)
T ss_pred ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC-ccccCcccccccceeeeEEEEECCCCc
Confidence 99964 556665 888999999531 11 2222322 221 1256678999998
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEe
Q 004789 634 CIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
-|++.-....||++|+..++....+
T Consensus 287 ElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 287 ELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEEeeCCeEEEEEeecCCCCceee
Confidence 8888777788999999988765544
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.3e-11 Score=128.69 Aligned_cols=314 Identities=11% Similarity=0.108 Sum_probs=201.5
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+|++|+.+|.+. +..++|++..... ...+. ....+.++.|||-|.||.+--. -.+|.-.+.
T Consensus 40 ~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~------~~~~~~~L~fSP~g~yL~T~e~---~~i~~~~~~---- 102 (566)
T KOG2315|consen 40 FAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCV------ELKKTYDLLFSPKGNYLLTWEP---WAIYGPKNA---- 102 (566)
T ss_pred EEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEe------ccceeeeeeecccccccccccc---cccccCCCC----
Confidence 46899999998764 4788888886321 22222 2338999999999998876211 001100000
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
......+|+.+++.....+.. ..... ++..|+ ++.+++-- .+.+++|+....+.... .-|...|+.+.++|
T Consensus 103 ----~~pn~~v~~vet~~~~s~~q~-k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 103 ----SNPNVLVYNVETGVQRSQIQK-KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP 175 (566)
T ss_pred ----CCCceeeeeeccceehhheeh-hhhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC
Confidence 011123444444322211111 12222 588888 66666666 89999999987433222 23677899999999
Q ss_pred CC---eEEE-----EECCCcEEEEecCCCceE-----EEEcCCCCCeEEEEEeCCCCEE-EEE--eCC---------CcE
Q 004789 496 QD---LFAF-----GFDDSSILVHCPCTKKTK-----AKLKGHQNRITCLAYSLSLNVL-VSS--GAD---------AQL 550 (730)
Q Consensus 496 dg---~l~s-----gs~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~l~~spd~~~l-~s~--s~d---------g~I 550 (730)
.+ .+|+ ++.-..|+||.......- ++|. ...=..+.|++-|.-| +.+ .-| .++
T Consensus 176 gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 176 GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence 85 4443 234458999987632211 1121 1222356788766532 222 223 357
Q ss_pred EEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 004789 551 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 627 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~ 627 (730)
+++++.+.+ ..+. .... ++|.++.|+|+|+.+++ | .-..+.|||+ .+.++..+. .++-.++-
T Consensus 254 yll~t~g~s----~~V~---L~k~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~----egpRN~~~ 318 (566)
T KOG2315|consen 254 YLLATQGES----VSVP---LLKE---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP----EGPRNTAF 318 (566)
T ss_pred EEEEecCce----EEEe---cCCC---CCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC----CCCccceE
Confidence 888887421 2222 1222 79999999999998887 4 5678999999 477777773 67788999
Q ss_pred EecCCCEEEEEEcC---CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC------CCcEE
Q 004789 628 YSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVH 698 (730)
Q Consensus 628 ~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~------Dg~I~ 698 (730)
|+|.|++|+.++-+ |.|-|||+.+.+++..+... +..-+.|+| ||.+|+|++. |+.++
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~P-dGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcC-CCcEEEEEeccccEEecCCeE
Confidence 99999998876654 89999999998888776531 123689999 8999998874 78899
Q ss_pred EEeCCCC
Q 004789 699 VIEPLES 705 (730)
Q Consensus 699 iWd~~~~ 705 (730)
||+....
T Consensus 386 iwhytG~ 392 (566)
T KOG2315|consen 386 IWHYTGS 392 (566)
T ss_pred EEEecCc
Confidence 9998644
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=2.5e-10 Score=121.59 Aligned_cols=278 Identities=16% Similarity=0.142 Sum_probs=174.2
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC----CCcEEEeecCCCccccccccccceeeEe
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLY 429 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~i~ 429 (730)
+.|.+|+++.. .+....+... .-......++++|++++|.++.. ++.|..|++....
T Consensus 13 ~gI~~~~~d~~--~g~l~~~~~~--~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~--------------- 73 (345)
T PF10282_consen 13 GGIYVFRFDEE--TGTLTLVQTV--AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT--------------- 73 (345)
T ss_dssp TEEEEEEEETT--TTEEEEEEEE--EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---------------
T ss_pred CcEEEEEEcCC--CCCceEeeee--cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---------------
Confidence 78999999542 2333222110 02455667899999999999877 4688888765531
Q ss_pred cCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCC-ceEEEE---Ec----------CCCCCeEEE
Q 004789 430 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA----------NPPPIATYF 491 (730)
Q Consensus 430 ~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t-~~~~~~---~~----------~~~~~v~~i 491 (730)
+.+...............++++ +++|+++. +|.|.++++.. |..... +. .......++
T Consensus 74 ----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 74 ----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp ----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred ----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 1111100000122344567787 88888887 79999999986 443332 21 123457899
Q ss_pred EEcCCC-eEEEEEC-CCcEEEEecCCCc--eE--EEEc-CCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC--CCcee
Q 004789 492 ILLPQD-LFAFGFD-DSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV--GWKKL 561 (730)
Q Consensus 492 ~~spdg-~l~sgs~-dg~I~iwd~~~~~--~~--~~~~-~h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~--~~~~~ 561 (730)
.++|+| ++++... ...|++|++.... .. ..+. ......+.++|+|+++++++.. .++.|.++++. .+...
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 999999 6666543 3489999987654 32 2222 2445678999999999886655 57889999988 44333
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCc--eeeeecCCCCCCCeEEEEEecCCCEE
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLN--HTSQLVPDKMDLPITYATYSCDGKCI 635 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~--~~~--~~~~~~~~~h~~~v~~~~~spdg~~l 635 (730)
....+.....+... ......|+++|||++|+++ ..+.|.+|++. +++ .+..+... ......++++|+|++|
T Consensus 230 ~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 230 EIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEE
T ss_pred EEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEE
Confidence 33333322222211 0257789999999999996 56789999983 233 33333321 4558999999999999
Q ss_pred EEEEc-CCeEEEEEC--CCceEEEE
Q 004789 636 YVSCK-SGHVKVFDT--STLELRCQ 657 (730)
Q Consensus 636 ~sgs~-dg~I~iwd~--~~~~~~~~ 657 (730)
+++.. ++.|.+|++ .+|.+...
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEe
Confidence 98875 478999976 56765544
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.9e-12 Score=137.67 Aligned_cols=214 Identities=15% Similarity=0.065 Sum_probs=141.4
Q ss_pred cEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC---CcEEEeecCCCccccccccccceeeEecC
Q 004789 355 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQP 431 (730)
Q Consensus 355 ~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~i~~~ 431 (730)
.|.+||.+ +...+.++ .|...+.+.+|||||+.|+..+.. ..|.+||+
T Consensus 183 ~l~~~d~d----g~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl--------------------- 233 (435)
T PRK05137 183 RLAIMDQD----GANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL--------------------- 233 (435)
T ss_pred EEEEECCC----CCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC---------------------
Confidence 67777764 23333433 277899999999999988887642 34444443
Q ss_pred CCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eE-EEEECCC--c
Q 004789 432 SSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDS--S 507 (730)
Q Consensus 432 ~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l-~sgs~dg--~ 507 (730)
.+++.. .+..+.+.+.+.+|+||| .| ++.+.++ .
T Consensus 234 -----------------------------------------~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 234 -----------------------------------------ETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred -----------------------------------------CCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 333321 222344456678999999 55 4556555 4
Q ss_pred EEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEE
Q 004789 508 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 584 (730)
Q Consensus 508 I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~ 584 (730)
|++||+.++.. ..+..+........|+|||+.|+..+. +| .|+++|+.+++. ..+. .+ . +.+....
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~lt---~~-~---~~~~~~~ 340 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RRIS---FG-G---GRYSTPV 340 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EEee---cC-C---CcccCeE
Confidence 88889987765 445556666778999999999887764 33 688888877432 1221 11 1 3466789
Q ss_pred EecCCcEEEEE-e-c--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCceE
Q 004789 585 FHPDQIHLLSI-H-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL 654 (730)
Q Consensus 585 ~spdg~~l~~s-~-d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d------g~I~iwd~~~~~~ 654 (730)
|+|||+.|+.. . . ..|.+||+.++. .+.+.. ...+..+.|+|||+.|+..+.+ ..++++|+.++..
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99999999873 2 2 358899985544 334432 2346788999999988765543 3688889877654
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.1e-12 Score=138.36 Aligned_cols=213 Identities=17% Similarity=0.087 Sum_probs=145.0
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
..|.+||.. +...+.+..+...+.+.+|+||| .|+.++.+ ..|++||+.+++.. .+..+.+...+++|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 368999986 44445566677789999999999 77777643 36999999887653 33334455568899999997
Q ss_pred EEE-EeCCC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCc--EEEEeCCCCceeee
Q 004789 541 LVS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQ--IDVYEAPTLNHTSQ 613 (730)
Q Consensus 541 l~s-~s~dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~--I~iwd~~~~~~~~~ 613 (730)
|+. .+.+| .|++||+.+++.. . + ..+. ......+|+|||+.++.+ .+|. |+++|+.+++.. .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~---~---l-t~~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~ 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT---R---L-TNHF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE---E---C-ccCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence 764 45555 5999999885421 1 1 1222 345678999999999874 3343 777888766543 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+... ......++|||||++|+..+.++ .|++||+.+++.. .+.. +. ... ..+|+| ++++++.
T Consensus 331 lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------~~---~~~--~p~~sp-dG~~i~~ 395 (433)
T PRK04922 331 LTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------GS---LDE--SPSFAP-NGSMVLY 395 (433)
T ss_pred eecC--CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC------CC---CCC--CceECC-CCCEEEE
Confidence 3221 33445789999999998765443 6999999888754 3321 21 233 578999 8888777
Q ss_pred EeCC---CcEEEEeCCCC
Q 004789 691 GLTN---GRVHVIEPLES 705 (730)
Q Consensus 691 ~s~D---g~I~iWd~~~~ 705 (730)
.+.+ +.|.++++..+
T Consensus 396 ~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 396 ATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEecCCceEEEEEECCCC
Confidence 6653 35778888544
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.8e-12 Score=127.95 Aligned_cols=251 Identities=13% Similarity=0.069 Sum_probs=179.8
Q ss_pred CCCcEEEEEEecCCC--EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCc
Q 004789 380 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~--~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 457 (730)
-...|..++|.-+++ .|...+.+..+....++.... ...+|+..+-. ....+|..++..+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~~--------l~~~~I~gl~~~dg 116 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTVS--------LGTKSIKGLKLADG 116 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcc---------ccccccccccc--------cccccccchhhcCC
Confidence 356788888887665 444554666666666554443 22234433211 35677888888855
Q ss_pred EEEEee-CCEEEEEEcCCce----EEEEEcCCCCCeEEEEEcCCC--eEEEEECC--CcEEEEecCCCceEEEEcCC---
Q 004789 458 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKGH--- 525 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~----~~~~~~~~~~~v~~i~~spdg--~l~sgs~d--g~I~iwd~~~~~~~~~~~~h--- 525 (730)
.|++|- +|.+.+|..+.+. .+..+..+ ..+..+.-++.. .+++|+.. ..+.+||+...+.+..-+.-
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 555555 9999999998543 22333333 445566666666 67779988 79999999987544332211
Q ss_pred ------CCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e
Q 004789 526 ------QNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 596 (730)
Q Consensus 526 ------~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~ 596 (730)
.-.++++.|.+. ...+|+++.-+.+++||.+.+. +++..+.... .+++++...|++++++++ .
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE----NPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc----CcceeeeecCCCcEEEEecc
Confidence 234678899887 7899999999999999999743 4444233222 589999999999999997 7
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEE
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 657 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 657 (730)
-+.+..||++.++.+..... +..+.+.++..+|.++++++++-|..|+|+|+.+.+++..
T Consensus 268 ~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred cchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 79999999999988877433 3589999999999999999999999999999999666543
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.1e-11 Score=135.74 Aligned_cols=213 Identities=12% Similarity=0.089 Sum_probs=143.8
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
..|.+||...... +.+..+...+.+.+|+||| .|+..+. +..|++||+.+++... +....+.+.+++|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 3799999875543 3444566788999999999 7765442 3479999998886433 2223344557899999998
Q ss_pred EEEE-eCCC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeee
Q 004789 541 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQ 613 (730)
Q Consensus 541 l~s~-s~dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~-dg--~I~iwd~~~~~~~~~ 613 (730)
|+.. +.+| .|++||+.+++.. + +..++ ..+....|+|||+.|+. +. ++ .|+++|+.+++.. .
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-----~-lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~ 325 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-----Q-VTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R 325 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-----E-ccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence 8865 4444 5889999885421 1 22222 35678999999999887 43 33 4666677666543 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+.. ........+|+|||++|+..+.+ ..|++||+.+++... +.. +. ... ...|+| |+++|+.
T Consensus 326 lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~------~~---~~~--~p~~Sp-DG~~i~~ 390 (429)
T PRK03629 326 ITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD------TF---LDE--TPSIAP-NGTMVIY 390 (429)
T ss_pred eec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC------CC---CCC--CceECC-CCCEEEE
Confidence 332 13445678999999999876554 458899999887443 321 11 123 578999 8999999
Q ss_pred EeCCCc---EEEEeCCCC
Q 004789 691 GLTNGR---VHVIEPLES 705 (730)
Q Consensus 691 ~s~Dg~---I~iWd~~~~ 705 (730)
++.++. +.+|++..+
T Consensus 391 ~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEcCCCceEEEEEECCCC
Confidence 888765 677777443
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=2e-12 Score=133.40 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=121.4
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEc----CCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCC-------------
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT------------- 515 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~----~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~------------- 515 (730)
+--+..|- -|.|++.|....+..+.+. -....|+|+.|-|.+ .++++-.+|.+++||..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 44466666 7899998876533222221 124689999999988 888888999999997531
Q ss_pred -Cc--------------eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe
Q 004789 516 -KK--------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 580 (730)
Q Consensus 516 -~~--------------~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v 580 (730)
+. ++..+.--.+.|+.++|+|||++||+.+.||.++|||..+.+. ..+.+..- +..
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL------lg~mkSYF---GGL 335 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL------LGVMKSYF---GGL 335 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH------HHHHHhhc---cce
Confidence 11 1112222345788999999999999999999999999998332 21333333 678
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEe
Q 004789 581 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 629 (730)
Q Consensus 581 ~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 629 (730)
.|++|||||++|++ |.|.-|.||.+..++.+.. +++|..+|..++|.
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEe--ccccccceeeEeec
Confidence 99999999999999 5999999999988887654 45789999999998
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.1e-11 Score=135.81 Aligned_cols=210 Identities=17% Similarity=0.135 Sum_probs=137.5
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
..|.++|.. |.....+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467788874 55555566677889999999999 77776643 359999999887543 3334456678999999998
Q ss_pred EE-EEeCCCcEEEEE--cCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEE--eCCCCceeee
Q 004789 541 LV-SSGADAQLCVWD--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY--EAPTLNHTSQ 613 (730)
Q Consensus 541 l~-s~s~dg~I~vwd--~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iw--d~~~~~~~~~ 613 (730)
|+ +.+.+|...+|. +.++. +..+ ..+. +......|+|||+.|+. + .+|...+| ++.++... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~------~~~l-t~~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~ 322 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG------LRRL-TQSS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-R 322 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC------cEEC-CCCC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-E
Confidence 87 456777766665 44422 1212 1222 34567889999999886 4 33554555 55555432 2
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+... .......+|||||++|+..+.++ .|++||+.+++...... + .... ..+|+| ++++|+.
T Consensus 323 lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-------~---~~~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 323 VTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-------T---TRDE--SPSFAP-NGRYILY 387 (427)
T ss_pred EecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-------C---CCcc--CceECC-CCCEEEE
Confidence 2211 23344678999999998777654 69999999887543221 1 1124 679999 8888887
Q ss_pred EeCCC-c--EEEEeC
Q 004789 691 GLTNG-R--VHVIEP 702 (730)
Q Consensus 691 ~s~Dg-~--I~iWd~ 702 (730)
++.++ . +.+.++
T Consensus 388 ~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 388 ATQQGGRSVLAAVSS 402 (427)
T ss_pred EEecCCCEEEEEEEC
Confidence 77554 2 444455
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8.1e-12 Score=137.42 Aligned_cols=232 Identities=16% Similarity=0.082 Sum_probs=147.7
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC---CcEEEeecCCCccccccccccceeeEec
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ 430 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~i~~ 430 (730)
..|.+||.++ ...+.++ .|...+.+.+|+|||+.|+.++.+ ..|.+||+.
T Consensus 184 ~~l~i~D~~g----~~~~~lt----~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~------------------- 236 (433)
T PRK04922 184 YALQVADSDG----YNPQTIL----RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA------------------- 236 (433)
T ss_pred EEEEEECCCC----CCceEee----cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC-------------------
Confidence 4688888753 2233333 267789999999999999887643 235555443
Q ss_pred CCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCC--
Q 004789 431 PSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS-- 506 (730)
Q Consensus 431 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg-- 506 (730)
+++.. .+....+...+..|+||| .++ +.+.+|
T Consensus 237 -------------------------------------------~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 237 -------------------------------------------TGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred -------------------------------------------CCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 32221 111222333478999999 554 555555
Q ss_pred cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CCc--EEEEEcCCCceecceeecccccCCCCCCCCeEEE
Q 004789 507 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 507 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg~--I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
.|++||+.+++. ..+..+.......+|+|||+.|+.++. +|. |+++|+.+++. ..+. ..+ .....+
T Consensus 273 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt--~~g-----~~~~~~ 341 (433)
T PRK04922 273 EIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT--FQG-----NYNARA 341 (433)
T ss_pred eEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee--cCC-----CCccCE
Confidence 599999988865 445555555678899999999887764 444 66777766432 1121 122 234578
Q ss_pred EEecCCcEEEEE-e-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCceEEE
Q 004789 584 QFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRC 656 (730)
Q Consensus 584 ~~spdg~~l~~s-~-dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~ 656 (730)
+|+|||++++.. . ++ .|.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|+++++..+. ..
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~-~~ 416 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV-RQ 416 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eE
Confidence 999999999873 2 22 5999999877654 4432 2234567999999988877664 468888886543 34
Q ss_pred EeecccccCCCCcccceeeEEEEEec
Q 004789 657 QINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 657 ~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
.+.. + .+.+. ..+|+|
T Consensus 417 ~l~~-------~-~g~~~--~p~wsp 432 (433)
T PRK04922 417 RLVS-------A-DGEVR--EPAWSP 432 (433)
T ss_pred Eccc-------C-CCCCC--CCccCC
Confidence 4431 1 23355 677877
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=5.3e-10 Score=111.60 Aligned_cols=279 Identities=11% Similarity=0.065 Sum_probs=181.1
Q ss_pred CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC---CcEEEeecCCCccccccccccceeeEe
Q 004789 353 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 429 (730)
Q Consensus 353 dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~i~ 429 (730)
+..|++|+++... ++.....+. .+.+.++-++|+|++++|.++..+ |.|.-|.++
T Consensus 15 s~gI~v~~ld~~~--g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTKT--GELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCcc--cccchhhhc--cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 5789999998432 222222221 267889999999999999998775 566666543
Q ss_pred cCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCC-ceEEEE--EcCCCCC----------eEEEE
Q 004789 430 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI 492 (730)
Q Consensus 430 ~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t-~~~~~~--~~~~~~~----------v~~i~ 492 (730)
..+|.+...-.......+-..++++ |++++++. .|.|.++-+++ |..... ...|.+. +.+..
T Consensus 73 -~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 73 -PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 3334322211100122333678888 88999998 69999999965 433222 2234333 78899
Q ss_pred EcCCC-eEEEEEC-CCcEEEEecCCCceEEEEc---CCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--Cceecce
Q 004789 493 LLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK 564 (730)
Q Consensus 493 ~spdg-~l~sgs~-dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~~--~~~~~~~ 564 (730)
+.|++ ++++..- --.|.+|++..|+....-. ......+.|+|+|++++....+. +++|.+|.... ++....+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99999 7776653 2379999999875432211 23455788999999998877664 89999999887 3333333
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC--CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
.+.+++.+... .....+|.+++||++|+++ ....|.+|.+.. ++....-....+........|++.|++|+++.+
T Consensus 232 ~i~tlP~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 44433333321 1456789999999999997 345788887754 332111111123555788999999999999888
Q ss_pred C-CeEEEEECC--CceEE
Q 004789 641 S-GHVKVFDTS--TLELR 655 (730)
Q Consensus 641 d-g~I~iwd~~--~~~~~ 655 (730)
+ ..|.+|.++ +|++.
T Consensus 311 ~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 311 KSDNITVFERDKETGRLT 328 (346)
T ss_pred CCCcEEEEEEcCCCceEE
Confidence 6 568888765 45443
No 235
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=7.9e-11 Score=121.36 Aligned_cols=324 Identities=10% Similarity=0.047 Sum_probs=212.3
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+||.|.+|++... ..|.+|.... ...+.++. ...|..+.|||.++||.+-+..+.+ +- ... .
T Consensus 38 ~~~SP~G~~l~~~~~-~~V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~---~p--e~e-~ 101 (561)
T COG5354 38 VSESPLGTYLFSEHA-AGVECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPII---EP--EIE-I 101 (561)
T ss_pred eeecCcchheehhhc-cceEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCcc---Ch--hhc-c
Confidence 578999999997755 6688898763 33555554 4568999999999999998776553 10 000 0
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEe--CcEEEEeeCCEEEEEEcCCceEE-EEEcC-CCCCeEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR--GSHLFSASGGKISIFSLETFQTL-ATFAN-PPPIATYFI 492 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s--~~~l~s~sdg~I~vwd~~t~~~~-~~~~~-~~~~v~~i~ 492 (730)
........+.+||..+|.++..+.........+ -+.|+ +.++|-.....++|+++ ++... ..+.. ....|....
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEE
Confidence 011111145788888888776443111121133 56677 66666556788999997 33221 11111 135688899
Q ss_pred EcCCC---eEEE-----EECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe-----------CCCcEEEE
Q 004789 493 LLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-----------ADAQLCVW 553 (730)
Q Consensus 493 ~spdg---~l~s-----gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-----------~dg~I~vw 553 (730)
|+|.+ .|+. ++.++.+++|.+..+..+.+-.-....=..+.|++.|++|.+-. ....++++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 99985 4443 45677999999987766654433333335678899888765321 12457888
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 630 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 630 (730)
++.. ..+. ...+.. ++|...+|.|+++.+++ | .+..+.++|++.. ....+. .+.-..+.|||
T Consensus 261 ~~~e------~~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp 325 (561)
T COG5354 261 RITE------RSIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSP 325 (561)
T ss_pred eecc------cccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecC----CcccccccccC
Confidence 8875 2222 121323 68999999999988887 3 6788999999755 433332 45556788999
Q ss_pred CCCEEEEEEcC---CeEEEEECCCceEEE-EeecccccCCCCcccceeeEEEEEecCCCCEEEEEe------CCCcEEEE
Q 004789 631 DGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL------TNGRVHVI 700 (730)
Q Consensus 631 dg~~l~sgs~d---g~I~iwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s------~Dg~I~iW 700 (730)
.+++++.++-| |.|-+||........ .+. |. + .. -+.|+| ++.++.+.. .|..|.||
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~~--n-~s--~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------GL--N-TS--YCDWSP-DGQFYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEee-------cC--C-ce--EeeccC-CceEEEecCCCcccccCcceEEE
Confidence 99999987766 889999988765443 443 21 1 22 678999 888877664 47889999
Q ss_pred eCCCCc
Q 004789 701 EPLESE 706 (730)
Q Consensus 701 d~~~~~ 706 (730)
++....
T Consensus 393 ~v~g~~ 398 (561)
T COG5354 393 DVYGAK 398 (561)
T ss_pred EecCch
Confidence 997653
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=4.7e-11 Score=127.05 Aligned_cols=286 Identities=16% Similarity=0.158 Sum_probs=172.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCCccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~~~~ 416 (730)
..++|||+++.+++.||.|.++|+.. .....++. -.....++++|+||+++++++. .+.+.++|.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~-----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLAT---GKVVATIK-----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEe-----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 46899999999999999999999974 23444444 3566788999999999998875 789999998776652
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEe-e-CCEEEEEEcCCceEEE-EEcCCCCCeEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLA-TFANPPPIATYF 491 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~-s-dg~I~vwd~~t~~~~~-~~~~~~~~v~~i 491 (730)
.. ..++... .......+..+..+ ...++.. - .+.|.+.|....+.+. +...........
T Consensus 114 ~~------------I~~~~~~----~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 114 KT------------IPTGGMP----VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EE------------EE--EE-----TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred ee------------ccccccc----ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 22 0000000 00134566677666 4434444 4 4899999987654332 222234456789
Q ss_pred EEcCCC-eEEE-EECCCcEEEEecCCCceEEEEc----CCCCCeEEEEEeCCC----------CEEEEEeCCCcEEEEEc
Q 004789 492 ILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSL----------NVLVSSGADAQLCVWDA 555 (730)
Q Consensus 492 ~~spdg-~l~s-gs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~spd~----------~~l~s~s~dg~I~vwd~ 555 (730)
.|+|++ ++++ ...++.|-++|..+++.+..+. .|..++..+ .+|.. ...++.-....+.+||.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchh
Confidence 999999 5554 4566799999999987776553 244444433 23322 22222222234556777
Q ss_pred CCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec
Q 004789 556 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 630 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 630 (730)
.+++.... +... +.-..+..+|+++++.+. ..++|.++|.++.+.+.++.... ...+..+.|++
T Consensus 257 ~~wkvv~~-----I~~~-----G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~ 325 (369)
T PF02239_consen 257 YAWKVVKT-----IPTQ-----GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNP 325 (369)
T ss_dssp TBTSEEEE-----EE-S-----SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-T
T ss_pred hcCeEEEE-----EECC-----CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECC
Confidence 77543322 2221 223778889999999985 34789999999998877775422 34599999999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCceEEEEee
Q 004789 631 DGKCIYVSCKS--GHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 631 dg~~l~sgs~d--g~I~iwd~~~~~~~~~~~ 659 (730)
||+.+..+..+ |.|.+||..+.+.+.++.
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99988776665 369999999999998886
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=6.8e-12 Score=121.29 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=109.1
Q ss_pred EEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--E-e
Q 004789 530 TCLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H 596 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~----------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s-~ 596 (730)
..+.|+|+|++|+.-.. -+...+|.++... .++..+..... ++|.+++|+|+|+.+++ | .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence 46778999987765332 1234555553321 22221222222 57999999999999876 3 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
++.|.+||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+.+.+.+.... | . .+
T Consensus 82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------~-~-~~ 146 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------H-S-DA 146 (194)
T ss_pred CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--------c-C-cE
Confidence 6789999996 66666663 5677899999999999988754 679999999888877653 1 2 24
Q ss_pred eeEEEEEecCCCCEEEEEeC------CCcEEEEeCCCCce
Q 004789 674 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPLESEV 707 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~------Dg~I~iWd~~~~~~ 707 (730)
. .++|+| +|++|++++. |+.++||+.. |+.
T Consensus 147 t--~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~ 182 (194)
T PF08662_consen 147 T--DVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ-GRL 182 (194)
T ss_pred E--EEEEcC-CCCEEEEEEeccceeccccEEEEEec-CeE
Confidence 4 899999 8999998874 7899999985 544
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=2.1e-11 Score=121.78 Aligned_cols=255 Identities=14% Similarity=0.098 Sum_probs=175.1
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
+...+...+.|..+..+.+.+............ .++.+.+|..++... | +|++|-.+|.+.+|..+.+...
T Consensus 68 ~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~-~~l~~~~I~gl~~~d-g-~Litc~~sG~l~~~~~k~~d~h------ 138 (412)
T KOG3881|consen 68 ETEVLNARSADDDLPKFVIEEFEISSSLDDAKT-VSLGTKSIKGLKLAD-G-TLITCVSSGNLQVRHDKSGDLH------ 138 (412)
T ss_pred ceeEeeccccCcccccccccCCccccccccccc-cccccccccchhhcC-C-EEEEEecCCcEEEEeccCCccc------
Confidence 344555454555565555543222211100000 012456666665543 3 5899999999999998755431
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-C--CEEEEEEcCCceEEEEEcCCC---------CC
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-G--GKISIFSLETFQTLATFANPP---------PI 487 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-d--g~I~vwd~~t~~~~~~~~~~~---------~~ 487 (730)
+..++.. .-...+..+.-+ ...+++|+ . ..+.+||+++.+.+.+-+... -.
T Consensus 139 ----------ss~l~~l----a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 139 ----------SSKLIKL----ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred ----------cccceee----ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence 0111110 012334444444 44566688 6 789999999886665544221 24
Q ss_pred eEEEEEcCC--C-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc
Q 004789 488 ATYFILLPQ--D-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 488 v~~i~~spd--g-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
++++.|-+. . .|++++.-+.|++||.+.+ +++..+.-...+++++...|+++.+++|..-|.+..||++++.
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k---- 280 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK---- 280 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce----
Confidence 578889887 5 9999999999999999876 6777787778899999999999999999999999999999953
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd 631 (730)
.+...+.+.. +.|+++..+|.++++++ |-|..+||+|+.+.+++..... ...++++.+.++
T Consensus 281 -l~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 281 -LLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred -eeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---hccccEEEecCC
Confidence 2232345555 79999999999999999 6999999999999777765544 566777777554
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=2.1e-11 Score=119.53 Aligned_cols=284 Identities=12% Similarity=0.110 Sum_probs=177.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCC----------CCCCcEEEEEEecCCC--EEEEEeCCCcE
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN----------SFGGRVVRLIYSHSGD--FLVALTQTATH 405 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~----------gh~~~V~~v~fspdg~--~L~s~s~dg~I 405 (730)
..+.-+|.+||||+.+|.|.++.-.............++.+ .-...|..+.|.++++ .++..+.|.+|
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkti 110 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTI 110 (433)
T ss_pred EEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcce
Confidence 36777899999999999999998764332211111112110 0135789999998765 56777889999
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEE-cC
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF-AN 483 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~-~~ 483 (730)
++|.+........ -|+.. ..+....|.++..- +.+. +-.+ ...+.+.+ .+
T Consensus 111 KlWKi~er~~k~~---------~~~~~---------~~~~~~~~~~lr~p----~~~~~~~~v------ea~prRv~aNa 162 (433)
T KOG1354|consen 111 KLWKIRERGSKKE---------GYNLP---------EEGPPGTITSLRLP----VEGRHDLEV------EASPRRVYANA 162 (433)
T ss_pred eeeeeeccccccc---------ccccc---------ccCCCCccceeece----eecccccee------eeeeeeecccc
Confidence 9999866543211 00000 00112222222221 0000 1000 01223333 26
Q ss_pred CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCc-e--EEEEcCC-----CCCeEEEEEeCC-CCEEEEEeCCCcEEEE
Q 004789 484 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-T--KAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLCVW 553 (730)
Q Consensus 484 ~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~-~--~~~~~~h-----~~~V~~l~~spd-~~~l~s~s~dg~I~vw 553 (730)
|+..|+++.++.|+ .++++ .|=.|.+|+++-.. . +..++.+ +.-|++..|+|. .+.++..+..|+|++.
T Consensus 163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 88889999999999 66664 56789999986432 1 1222222 356889999995 4778888889999999
Q ss_pred EcCCCceec--ce----eec----ccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCceeeeecCCCC---
Q 004789 554 DAVGWKKLC--SK----FLH----SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQLVPDKM--- 619 (730)
Q Consensus 554 d~~~~~~~~--~~----~i~----~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~-~~~~~~~~~~~~~h--- 619 (730)
|++....-. .+ +.. .++.+-. ..|..+.|+++|+++++-.--+|++||+ ...+++.++..+.+
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiI---sSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEII---SSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHh---hhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence 998532100 00 000 0111111 4688899999999999876688999999 45666666654321
Q ss_pred -------CC---CeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 620 -------DL---PITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 620 -------~~---~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
.. .-..++|+-++.++++|+..+.+++|+...|.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 11 23468899999999999999999999966553
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.6e-11 Score=117.28 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=107.1
Q ss_pred EEEEEcCCC-eEE-EEEC--C-------CcEEEEecCC-CceEEEEcC-CCCCeEEEEEeCCCCEEEEE--eCCCcEEEE
Q 004789 489 TYFILLPQD-LFA-FGFD--D-------SSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVSS--GADAQLCVW 553 (730)
Q Consensus 489 ~~i~~spdg-~l~-sgs~--d-------g~I~iwd~~~-~~~~~~~~~-h~~~V~~l~~spd~~~l~s~--s~dg~I~vw 553 (730)
..+.|+|+| .|+ .... | +...+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 368899999 433 3331 1 2344444422 233444432 34579999999999987554 467899999
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEe
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 629 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~---dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 629 (730)
|++. ..+..+.. ..+..+.|+|+|++++++ . .|.|.+||.++.+.+.... ...++.++|+
T Consensus 89 d~~~------~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 89 DVKG------KKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred cCcc------cEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 9974 33332221 467899999999999984 2 4679999999888876663 3457899999
Q ss_pred cCCCEEEEEEc------CCeEEEEECCCceEEEEe
Q 004789 630 CDGKCIYVSCK------SGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 630 pdg~~l~sgs~------dg~I~iwd~~~~~~~~~~ 658 (730)
|||+++++++. |+.++||+.. |+++...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999998875 7889999985 5555544
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.1e-11 Score=130.03 Aligned_cols=212 Identities=14% Similarity=0.080 Sum_probs=139.4
Q ss_pred CCCCCeeEEEEe--CcEEEEee-C---CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCcEEEE--ec
Q 004789 444 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVH--CP 513 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-d---g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~I~iw--d~ 513 (730)
.+...+.+.+|+ |+.|+..+ + ..|++||+.+++... +....+.+.+.+|+||| .|+ +.+.++...+| |+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366788899999 88888776 2 469999999887643 33344556789999999 665 56777765555 55
Q ss_pred CCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEc--CCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 514 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 514 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~--~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
.++. ...+..+........|+|||+.|+..+. +|...+|.+ .++.. ..+. ..+ ......+|+|||+
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT--FTG-----SYNTSPRISPDGK 340 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe--cCC-----CCcCceEECCCCC
Confidence 5444 4555556666678899999998886654 456666654 44321 1111 122 2344678999999
Q ss_pred EEEE-EecC---cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCceEEEEeecccc
Q 004789 591 HLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAY 663 (730)
Q Consensus 591 ~l~~-s~dg---~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~ 663 (730)
+++. +.++ .|++||+.+++.. .+.. ........|+|||+.|+.++.++ .+++.++. +.....+..
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~--- 412 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSV--- 412 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeec---
Confidence 9987 4333 5999999887654 3332 22346789999999988777653 46666764 444444431
Q ss_pred cCCCCcccceeeEEEEEec
Q 004789 664 AQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 664 ~~~gh~~~~v~~~~v~~sp 682 (730)
+ .+.+. ..+|+|
T Consensus 413 ----~-~g~~~--~p~wsp 424 (427)
T PRK02889 413 ----Q-GGDVR--EPSWGP 424 (427)
T ss_pred ----C-CCCCC--CCccCC
Confidence 1 33455 678887
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=9.8e-11 Score=122.18 Aligned_cols=305 Identities=12% Similarity=0.117 Sum_probs=195.2
Q ss_pred ccceeecCCCce------eceecccccce-eEEEEeeccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCCCCe
Q 004789 274 CINVMPNANNET------ISLKDFPTVSN-LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADS 346 (730)
Q Consensus 274 c~~~~~s~dg~~------~~v~~~d~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (730)
|+..++|++|+. -.+.-|+..++ .+++ .... -..+..+||-|.+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt----------------------------~~~~-~~~~L~fSP~g~y 87 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLC----------------------------VELK-KTYDLLFSPKGNY 87 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEE----------------------------eccc-eeeeeeecccccc
Confidence 889999999995 23344555555 3333 1111 2244567777777
Q ss_pred eEee-----cC-----CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 347 AVCA-----KS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 347 lat~-----~~-----dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
|.|= .. .-.+++|++.. .+....+... .+.. |+..|++|.. |++=-..+.+.+|+..+...
T Consensus 88 L~T~e~~~i~~~~~~~~pn~~v~~vet-----~~~~s~~q~k-~Q~~-W~~qfs~dEs-l~arlv~nev~f~~~~~f~~- 158 (566)
T KOG2315|consen 88 LLTWEPWAIYGPKNASNPNVLVYNVET-----GVQRSQIQKK-MQNG-WVPQFSIDES-LAARLVSNEVQFYDLGSFKT- 158 (566)
T ss_pred cccccccccccCCCCCCCceeeeeecc-----ceehhheehh-hhcC-cccccccchh-hhhhhhcceEEEEecCCccc-
Confidence 7542 11 24577999874 2222111111 2233 8999999987 34433456788887755322
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-C---cEEEEe-----e-CCEEEEEEcCCceEEEEEc---C
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSA-----S-GGKISIFSLETFQTLATFA---N 483 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~---~~l~s~-----s-dg~I~vwd~~t~~~~~~~~---~ 483 (730)
.... -|...|..+.++ | ..+|+- + -+.|++|.......-..+. -
T Consensus 159 --------------------~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF 215 (566)
T KOG2315|consen 159 --------------------IQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF 215 (566)
T ss_pred --------------------eeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc
Confidence 1111 267888889998 4 244442 2 3589999876322111111 1
Q ss_pred CCCCeEEEEEcCCC--eEEEE--ECCC---------cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEE--EeCCC
Q 004789 484 PPPIATYFILLPQD--LFAFG--FDDS---------SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS--SGADA 548 (730)
Q Consensus 484 ~~~~v~~i~~spdg--~l~sg--s~dg---------~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s--~s~dg 548 (730)
....=..+.|++-| +|+.+ .-|. ++++++++...+...+. ..++|.++.|+|+++-+++ |-.-.
T Consensus 216 Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPA 294 (566)
T KOG2315|consen 216 FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPA 294 (566)
T ss_pred cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccc
Confidence 12222368888887 44333 3333 68888888445544444 5789999999999976654 55677
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 624 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 624 (730)
.+.+||++. .++..+.. ++-.++-|+|.|++++. | -.|.|-+||+.+.+++..+. ....+
T Consensus 295 kvtifnlr~------~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt 358 (566)
T KOG2315|consen 295 KVTIFNLRG------KPVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTT 358 (566)
T ss_pred eEEEEcCCC------CEeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCce
Confidence 899999997 55553444 45678999999999987 5 35889999999988887775 34456
Q ss_pred EEEEecCCCEEEEEEc------CCeEEEEECCCceEEEE
Q 004789 625 YATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQ 657 (730)
Q Consensus 625 ~~~~spdg~~l~sgs~------dg~I~iwd~~~~~~~~~ 657 (730)
-+.|+|||.++++++. |+.++||+.. |.++..
T Consensus 359 ~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~ 396 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHE 396 (566)
T ss_pred EEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeeh
Confidence 7899999999998876 6889999975 444433
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.6e-10 Score=127.16 Aligned_cols=210 Identities=16% Similarity=0.083 Sum_probs=141.8
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
..|.++|...+ ..+.+..+...+.+.+|+||| .|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46888887643 345555566778899999999 77766543 479999999886543 3335566778999999987
Q ss_pred EEE-EeCCC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeee
Q 004789 541 LVS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQ 613 (730)
Q Consensus 541 l~s-~s~dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~-dg--~I~iwd~~~~~~~~~ 613 (730)
|+. .+.++ .|++||+.++... . +. .+. .......|+|||+.|+. +. ++ .|+++|+.+++.. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~---~---l~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT---R---LT-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE---E---CC-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 764 44444 5889999874321 1 11 122 23456789999999886 32 23 5888898776643 3
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+.. +...+..+.|+|+|++++.++.++ .|++||+.++....... + . ... ..+|+| ++++|+.
T Consensus 317 l~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-------~--~-~~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 317 LTF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-------T--G-LDE--SPSFAP-NGRMILY 381 (417)
T ss_pred eec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-------C--C-CCC--CceECC-CCCEEEE
Confidence 332 245667889999999999888776 89999998865432221 1 1 123 568999 7888877
Q ss_pred EeCCC---cEEEEeC
Q 004789 691 GLTNG---RVHVIEP 702 (730)
Q Consensus 691 ~s~Dg---~I~iWd~ 702 (730)
++.++ .+.+.+.
T Consensus 382 ~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 382 ATTRGGRGVLGLVST 396 (417)
T ss_pred EEeCCCcEEEEEEEC
Confidence 76654 3455554
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.6e-10 Score=118.48 Aligned_cols=334 Identities=11% Similarity=0.065 Sum_probs=211.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+||-|.||+|--. ..|.+|--.. -..++++. |. .|.-+.|||+.+||++-|..-.+.=|+-..+
T Consensus 216 v~wSP~GTYL~t~Hk-~GI~lWGG~~---f~r~~RF~-----Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~---- 281 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHK-QGIALWGGES---FDRIQRFY-----HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG---- 281 (698)
T ss_pred EEecCCceEEEEEec-cceeeecCcc---HHHHHhcc-----CC-CceeeecCCccceEEEecCCccccCcccCCC----
Confidence 378999999998766 5577886542 34556654 43 4888999999999999876433333321111
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCe-eEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V-~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
....+||+.+|.+.+.+..-.....+ .-+.|| ++|+|.-....|.||+.....++..-.-.-..|....|+
T Consensus 282 ------~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 282 ------QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred ------ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccC
Confidence 11244555555443322110011222 235788 888888888899999988765554444455678899999
Q ss_pred CCC-eEEEEEC--C---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEEcCCC
Q 004789 495 PQD-LFAFGFD--D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG----------ADAQLCVWDAVGW 558 (730)
Q Consensus 495 pdg-~l~sgs~--d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s----------~dg~I~vwd~~~~ 558 (730)
|.+ .||-=.. + ..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|..-- .-..+-|+.++..
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 999 6664322 1 2577778888877777665544444566777888876421 1123455666552
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE--E--ecCcEEEEeCCC-C---ceeeeecCCCCCCCeEEEEEec
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYSC 630 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s--~dg~I~iwd~~~-~---~~~~~~~~~~h~~~v~~~~~sp 630 (730)
. .++..+.. . ..|...+|-|.|..+++ + ...++.+|.+.+ . +.+..+. ....+.+.|+|
T Consensus 436 d----Ipve~vel-k----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsP 502 (698)
T KOG2314|consen 436 D----IPVEVVEL-K----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSP 502 (698)
T ss_pred C----CCceeeec-c----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcC
Confidence 1 22221111 1 47889999999998887 3 335689998873 2 2223332 56678899999
Q ss_pred CCCEEEEEE---cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC------CCcEEEEe
Q 004789 631 DGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVIE 701 (730)
Q Consensus 631 dg~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~------Dg~I~iWd 701 (730)
.|++++.+. ..|.+.++|.........-.+ .| .. .+ .+.|.| .|++++|++. |..-+||+
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~------eh-~~-at--~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTASP------EH-FA-AT--EVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhccCc------cc-cc-cc--cceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 999998664 468999999885332222111 12 11 23 789999 8999999885 45568898
Q ss_pred CCCCc-----------eeeeccCCC
Q 004789 702 PLESE-----------VEWGKLPFT 715 (730)
Q Consensus 702 ~~~~~-----------~~w~~~~~~ 715 (730)
+.... -.|.+.||.
T Consensus 572 fqGrll~~~~i~~f~qF~WRPRPps 596 (698)
T KOG2314|consen 572 FQGRLLKEDIIDRFKQFLWRPRPPS 596 (698)
T ss_pred eecHHHHHHHHHHHHhhccCCCCCc
Confidence 87552 358887774
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=5.5e-09 Score=111.26 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=155.8
Q ss_pred CCeeEEEEe--CcEEEEee-C----CEEEEEEcCCc--e--EEEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEec
Q 004789 447 DSISCFALR--GSHLFSAS-G----GKISIFSLETF--Q--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCP 513 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s-d----g~I~vwd~~t~--~--~~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~ 513 (730)
.....++++ +++|+++. . |.|..|++... + .+............++++|++ +++++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 344567777 77777776 3 58888888653 3 333444344556789999999 777665 5889999999
Q ss_pred CC-CceEEE---Ec----------CCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCc--eecceeecccccCCCCC
Q 004789 514 CT-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 514 ~~-~~~~~~---~~----------~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~~~~--~~~~~~i~~~~~~h~~~ 576 (730)
.. |..... +. .......++.|+|+++++++... ...|.+|++.... ......+. ...+
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G---- 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG---- 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT----
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC----
Confidence 87 433222 21 12355789999999998887653 4579999997744 21111222 2233
Q ss_pred CCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC--CCc--eeeeecCC---C-CCCCeEEEEEecCCCEEEEEEc-CCeEE
Q 004789 577 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLN--HTSQLVPD---K-MDLPITYATYSCDGKCIYVSCK-SGHVK 645 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~--~~~--~~~~~~~~---~-h~~~v~~~~~spdg~~l~sgs~-dg~I~ 645 (730)
.....++|+|+++++++ . .++.|.+|++. ++. .+..+... . .......++++|||++|+++.. ++.|.
T Consensus 192 -~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 192 -SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp -SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred -CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 46789999999999988 4 67889999987 332 22222211 1 1236788999999999998775 47899
Q ss_pred EEECC--CceEE--EEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 004789 646 VFDTS--TLELR--CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLE 704 (730)
Q Consensus 646 iwd~~--~~~~~--~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s-~Dg~I~iWd~~~ 704 (730)
+|+++ ++++. ..+... | ..+..++++| ++++|+++. .++.|.+|++..
T Consensus 271 vf~~d~~~g~l~~~~~~~~~-----G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTG-----G-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEEES-----S-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEeCC-----C-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeC
Confidence 99993 34433 222210 2 1234899999 889888776 667999998753
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.4e-10 Score=122.63 Aligned_cols=213 Identities=14% Similarity=0.035 Sum_probs=140.3
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 541 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l 541 (730)
.|.++|...+. .+.+..+...+....|+||| .|+..+.+ ..|++||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47788887544 44555667788999999999 77665543 369999999886543 33334455678999999988
Q ss_pred EE-EeCCC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ec--CcEEEEeCCCCceeeee
Q 004789 542 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 542 ~s-~s~dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~d--g~I~iwd~~~~~~~~~~ 614 (730)
+. .+.+| .|++||+.+++.. .+ ..+. .......|+|||+.++. + .+ ..|+++|+.+++..+ +
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~---~l----t~~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS---RV----TNHP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE---Ec----ccCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 74 44444 5888899885421 11 1122 34567889999998887 3 23 358888987776533 3
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
... ........|+|||++|+..+.+ + .|++||+.+++... +.. + . ... ...|+| ++++++..
T Consensus 327 t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~------~--~-~~~--~p~~sp-dg~~i~~~ 391 (430)
T PRK00178 327 TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD------T--S-LDE--SPSVAP-NGTMLIYA 391 (430)
T ss_pred ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC------C--C-CCC--CceECC-CCCEEEEE
Confidence 221 2334467899999999877654 3 58899999886533 221 1 1 112 458999 88888766
Q ss_pred eCC---CcEEEEeCCCCc
Q 004789 692 LTN---GRVHVIEPLESE 706 (730)
Q Consensus 692 s~D---g~I~iWd~~~~~ 706 (730)
+.+ ..|.++++..+.
T Consensus 392 ~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 392 TRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EecCCceEEEEEECCCCc
Confidence 644 346777775443
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=5e-11 Score=132.63 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=147.0
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE-----EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-----CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-----~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
.++.++.++.+.+||...+.....+.. ..... -+.++++.-++++|+.-+.|.+|+..... .+. ...+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p~--~l~G 173 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----KPI--RLKG 173 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----Ccc--eecc
Confidence 788888889999999988877666653 22221 23346666789999999999999998411 222 4788
Q ss_pred CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 573 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
|+ +.|.++.++.||+++++ +.|.++++|++.+.+... -..-+|...++.++|.|+ .++++++|-+.++|+.+.
T Consensus 174 He---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 174 HE---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred cC---CceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 98 89999999999999999 789999999999988765 222368999999999998 899999999999997664
Q ss_pred ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 652 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 652 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
.+ +..+. +|....++ .++.++ +....+|++.||.+++|++...
T Consensus 248 ~~-l~~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 248 TQ-LEVYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ce-ehhhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 44 34555 66677789 888888 7788999999999999999765
No 248
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.29 E-value=2e-11 Score=115.41 Aligned_cols=162 Identities=22% Similarity=0.272 Sum_probs=129.1
Q ss_pred chhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch---------HHHHHHHHhCCCHHHHHHHhcccc--cccCCccccch
Q 004789 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFFN---------VHRFGEIVMNGEWEKAEKYLSAFT--KLDDSNHSKKM 80 (730)
Q Consensus 12 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~ 80 (730)
++.|+.|||+.||-.+||.++|..+..|+|+... -...+.+|..|+-++|+..+..+. .++.+.. +
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~---l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE---L 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh---H
Confidence 5899999999999999999999999999999982 677899999999999999998774 2344433 8
Q ss_pred hhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccccccccccCCCC--ChhhHHHHHHHHHHh
Q 004789 81 FFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTN--ATSSRAKLIDSLKLL 158 (730)
Q Consensus 81 ~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~ 158 (730)
.|.+.+|+++||+..+...+|+.|++.+|.|+...+++.+.+|...+.+--++..+..+ .+. ..+.|.++++.+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888899888877764443222222 111 456699999999887
Q ss_pred hhccccccccccCCCCchhHHHHHHHh
Q 004789 159 VKENRILQDKLIFPCVNNSALSSLIKL 185 (730)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~rL~~ll~q 185 (730)
|-.. ..... ..+|..|++.
T Consensus 181 iL~~---~~~~~-----~~~l~~llk~ 199 (228)
T KOG2659|consen 181 ILAS---QEHES-----EPKLPFLLKL 199 (228)
T ss_pred HHHH---hcccc-----cchHHHHHHH
Confidence 7551 22222 3478888755
No 249
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=4.7e-09 Score=113.73 Aligned_cols=275 Identities=12% Similarity=0.047 Sum_probs=173.1
Q ss_pred CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEE
Q 004789 392 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF 470 (730)
Q Consensus 392 dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vw 470 (730)
.+..+++++.+|.+..+|..+++. +|....+.. ........+..++.++ +|.+..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~-----------~~~~p~v~~~~v~v~~~~g~l~al 120 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR------------LWRVDLDER-----------LSGGVGADGGLVFVGTEKGEVIAL 120 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE------------eeeecCCCC-----------cccceEEcCCEEEEEcCCCEEEEE
Confidence 366789999999999999888764 665432211 1112333466777777 9999999
Q ss_pred EcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCe-----EEEEEeCCCCEEEEEe
Q 004789 471 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG 545 (730)
Q Consensus 471 d~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~spd~~~l~s~s 545 (730)
|..+|+.+............... .++.++.++.++.|+.||.++|+.+..+......+ .+.... +..++.++
T Consensus 121 d~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~ 197 (377)
T TIGR03300 121 DAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGF 197 (377)
T ss_pred ECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEEC
Confidence 99999998776543321111222 23367777889999999999999877765432211 111222 24677888
Q ss_pred CCCcEEEEEcCCCceecceeecccccCCCCCCCC---e-EEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCC
Q 004789 546 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 620 (730)
Q Consensus 546 ~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~---v-~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~ 620 (730)
.++.+..+|..+++......+. ...+... ... + ....+ .+..+++ +.+|.++.||..+++.+......
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--- 270 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--- 270 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC---
Confidence 8899999999987654322221 1111000 000 0 11112 2334554 68899999999999877655321
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEE
Q 004789 621 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 700 (730)
Q Consensus 621 ~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iW 700 (730)
...... .++..+++++.||.|+.+|..+|+.+...... + ..... .... .+..+++++.||.|++|
T Consensus 271 -~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 271 -SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred -CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEE
Confidence 111222 34678888889999999999999877554211 1 11111 1111 25688889999999999
Q ss_pred eCCCCceeeeccCC
Q 004789 701 EPLESEVEWGKLPF 714 (730)
Q Consensus 701 d~~~~~~~w~~~~~ 714 (730)
|..+++..|.....
T Consensus 336 d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 336 SREDGSFVARLKTD 349 (377)
T ss_pred ECCCCCEEEEEEcC
Confidence 99999999977543
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-10 Score=114.15 Aligned_cols=257 Identities=15% Similarity=0.215 Sum_probs=171.3
Q ss_pred CCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 004789 445 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 501 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~-----~~~~~~~~~------------~~v~~i~~spdg---~l~s 501 (730)
...-|.++.|. |++||+|. +|.|.++.-.... ....++.|. ..|..+.|.+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44668899999 99999999 9999998754322 233444443 357889999888 7788
Q ss_pred EECCCcEEEEecCCCc-----------------------------------eEEEE-cCCCCCeEEEEEeCCCCEEEEEe
Q 004789 502 GFDDSSILVHCPCTKK-----------------------------------TKAKL-KGHQNRITCLAYSLSLNVLVSSG 545 (730)
Q Consensus 502 gs~dg~I~iwd~~~~~-----------------------------------~~~~~-~~h~~~V~~l~~spd~~~l~s~s 545 (730)
.+.|.+|++|-+.... +.+.+ .+|...|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999875321 11112 24788899999999999988764
Q ss_pred CCCcEEEEEcCCCceecceeeccccc-CCCCCCCCeEEEEEecCCc-EEE-EEecCcEEEEeCCCCceee----eec--C
Q 004789 546 ADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQI-HLL-SIHEGQIDVYEAPTLNHTS----QLV--P 616 (730)
Q Consensus 546 ~dg~I~vwd~~~~~~~~~~~i~~~~~-~h~~~~~~v~~l~~spdg~-~l~-~s~dg~I~iwd~~~~~~~~----~~~--~ 616 (730)
|-.|.+|++.-..+ ...+-.+.. ..+..+.-|++..|+|..- .++ +++.|+|++.|++.....- .+. .
T Consensus 184 -dLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 78899999865221 111111111 0000113578899999533 333 3689999999998432210 111 0
Q ss_pred CC--------CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC-CCceEEEEeecccccCCC----Cccccee-eEEEEEec
Q 004789 617 DK--------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLELRCQINLTAYAQPG----TISLELY-PLVIAAHP 682 (730)
Q Consensus 617 ~~--------h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~-~~~~~~~~~~~~~~~~~g----h~~~~v~-~~~v~~sp 682 (730)
.+ --..|..+.|+++|+|+++-.. -+|++||+ ...+++.++..+.+.... .....|. .+.++|+-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 00 1346788999999999998532 78999999 455667777655433110 0122222 35789998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 683 LEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
++.+++||+....+++++...|.
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -CcceEecccccceEEEecCCCCc
Confidence 78899999999999999977664
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.7e-09 Score=119.03 Aligned_cols=210 Identities=14% Similarity=0.112 Sum_probs=134.4
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-CC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 541 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l 541 (730)
.|.++|...... +.+..+...+.+..|+||| .|+..+. ++ .|++||+.+++... +....+.....+|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 677778754433 4555567788899999999 7766543 33 68999998876532 32223344578999999988
Q ss_pred EE-EeCCCc--EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecC--cEEEEeCCCCceeeee
Q 004789 542 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQL 614 (730)
Q Consensus 542 ~s-~s~dg~--I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg--~I~iwd~~~~~~~~~~ 614 (730)
+. .+.++. |+++|+.+++. .. +.. +. ......+|+|||+.++. + .++ .|+++|+.+++... +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~---~~---lt~-~~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL---TR---ITR-HR---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe---EE---Ccc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence 75 455664 77888887532 11 111 22 34567899999999887 3 233 47888887776543 3
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
... .......+|+|||++|+..+.+ + .|+++|+.+++... +.. + . ... ..+|+| ++++|+..
T Consensus 346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------~--~-~d~--~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------T--R-LDE--SPSVAP-NGTMVIYS 410 (448)
T ss_pred ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------C--C-CCC--CceECC-CCCEEEEE
Confidence 211 2233457899999998876653 3 56678888876533 221 1 1 112 457999 78877665
Q ss_pred eC-CCc--EEEEeCC
Q 004789 692 LT-NGR--VHVIEPL 703 (730)
Q Consensus 692 s~-Dg~--I~iWd~~ 703 (730)
+. +|. +.+++..
T Consensus 411 ~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 411 TTYQGKQVLAAVSID 425 (448)
T ss_pred EecCCceEEEEEECC
Confidence 54 443 6677763
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=1.8e-08 Score=104.89 Aligned_cols=272 Identities=13% Similarity=0.078 Sum_probs=163.1
Q ss_pred CcEEEEeecCCCCCccee-eeecCCCCCCCcEEEEEEecCCCEEEEEeC----------CCcEEEeecCCCccccccccc
Q 004789 354 EKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~-~~~l~~~gh~~~V~~v~fspdg~~L~s~s~----------dg~I~iWd~~~~~~~~~~~~~ 422 (730)
++|.+.|.+. .+.. .+.. |.... .+ +||||+.|+++.. +..|.+||..+.+....
T Consensus 27 ~~v~ViD~~~----~~v~g~i~~---G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~---- 92 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGMTDG---GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD---- 92 (352)
T ss_pred ceEEEEECCC----CEEEEEEEc---cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE----
Confidence 8899999863 2322 2221 11122 24 9999998888776 57899998887765322
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg 497 (730)
+--+...+.. ....-..++++ |++++... ++.|.+.|+.+++.+..+..... ..-...++++
T Consensus 93 -----i~~p~~p~~~-------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~ 159 (352)
T TIGR02658 93 -----IELPEGPRFL-------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDT 159 (352)
T ss_pred -----EccCCCchhh-------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCc
Confidence 0000000000 11223356677 88888766 58999999999999998875332 1112222221
Q ss_pred eEEEEECCCcEEEEecCC-Cce-EE---EEcCCCCCeE-EEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 498 LFAFGFDDSSILVHCPCT-KKT-KA---KLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~-~~~-~~---~~~~h~~~V~-~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
. .+-+.||......+.+ |+. .. .+.+...++. .-.|.+ +|+++..... |+|.+.|+..........+..+.
T Consensus 160 ~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 160 F-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred c-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence 1 1222334333322221 111 11 1111001110 004455 7877776665 99999997654332223332111
Q ss_pred c-----CCCCCCCCeEEEEEecCCcEEEE-E--ec--------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC-
Q 004789 571 T-----GLVPETTIVNHIQFHPDQIHLLS-I--HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK- 633 (730)
Q Consensus 571 ~-----~h~~~~~~v~~l~~spdg~~l~~-s--~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~- 633 (730)
. +-.+ +.+.-++++|+++.+++ . .. +.|.++|..+++.+..+.. ...+..++++|||+
T Consensus 238 ~~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp 312 (352)
T TIGR02658 238 EAEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKP 312 (352)
T ss_pred ccccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCe
Confidence 1 1112 44556999999999887 3 12 4799999999999998875 56899999999999
Q ss_pred EEEEEE-cCCeEEEEECCCceEEEEee
Q 004789 634 CIYVSC-KSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 634 ~l~sgs-~dg~I~iwd~~~~~~~~~~~ 659 (730)
+|++.. .++.|.++|..+++.+..+.
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 888776 46889999999999988874
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=2.2e-08 Score=108.51 Aligned_cols=294 Identities=10% Similarity=0.050 Sum_probs=181.5
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
++..+++++.+|.+.-+|... +....+..+.. .+.. ....++..+++++.+|.+..+|..+++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t---G~~~W~~~~~~-----~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~------- 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET---GKRLWRVDLDE-----RLSG-GVGADGGLVFVGTEKGEVIALDAEDGKE------- 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC---CcEeeeecCCC-----Cccc-ceEEcCCEEEEEcCCCEEEEEECCCCcE-------
Confidence 467888888889999999753 33333433322 1111 1122466788899999999999888774
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeE-EEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCe-----EEEEEcC
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TYFILLP 495 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~-l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v-----~~i~~sp 495 (730)
+|....+ ..+.+ ....+..++.+. +|.+..||.++|+.+..+......+ .+....
T Consensus 128 -----~W~~~~~------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~- 189 (377)
T TIGR03300 128 -----LWRAKLS------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA- 189 (377)
T ss_pred -----eeeeccC------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-
Confidence 5653321 11111 122355566666 9999999999999888776433221 111221
Q ss_pred CCeEEEEECCCcEEEEecCCCceEEEEcCCCC-------C---e-EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecce
Q 004789 496 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------R---I-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 496 dg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-------~---V-~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~ 564 (730)
++.++.+..++.+..+|.++|+.+........ . + .+..+ .+..+++++.+|.++.||..+++.....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 23677888889999999999987654321100 0 0 11112 2457788888999999999987643222
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 643 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~ 643 (730)
... ....... ++..+++ +.+|.++.+|..+++.+....... .....+... .+..|++++.+|.
T Consensus 268 ~~~-----------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 268 DAS-----------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred ccC-----------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCCCE
Confidence 111 1112222 3455555 588999999999998765542111 112222222 4678999999999
Q ss_pred EEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEE
Q 004789 644 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 700 (730)
Q Consensus 644 I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iW 700 (730)
|+++|..+|+.+..+... ...+.. ..++. + +.|+.++.||.|..|
T Consensus 332 l~~~d~~tG~~~~~~~~~--------~~~~~~-sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTD--------GSGIAS-PPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcC--------CCcccc-CCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999998877632 111221 11222 3 458888899999876
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=3.3e-09 Score=116.71 Aligned_cols=197 Identities=19% Similarity=0.133 Sum_probs=132.0
Q ss_pred CCCCeeEEEEe--CcEEEEee-C---CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCC--cEEEEecC
Q 004789 445 PKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCPC 514 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-d---g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg--~I~iwd~~ 514 (730)
+...+...+|+ |++|+.+. + ..|++||+.+++.... ..+...+.+++|+||| .|+ +.+.++ .|++||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 55678888999 88888776 3 4899999998865433 3355566789999999 555 444444 69999998
Q ss_pred CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE
Q 004789 515 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 515 ~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
++.. ..+..+........|+|||++|+..+. ++ .|+++|+.+++. ..+. . +. ..+..+.|+|+|++
T Consensus 267 ~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~---~~l~---~-~~---~~~~~~~~spdg~~ 335 (417)
T TIGR02800 267 GKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV---RRLT---F-RG---GYNASPSWSPDGDL 335 (417)
T ss_pred CCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEee---c-CC---CCccCeEECCCCCE
Confidence 7754 344445555567889999998877654 33 578888876432 1111 1 11 35678899999999
Q ss_pred EEEE-ecC---cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCceEEEEe
Q 004789 592 LLSI-HEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQI 658 (730)
Q Consensus 592 l~~s-~dg---~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~ 658 (730)
++.+ .++ .|.+||+.++.. ..+.. ........|+|||++|+..+.++ .+++.+.. +.....+
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~-~~l~~---~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGE-RVLTD---TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCe-EEccC---CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 9884 443 689999987544 33332 22334568999999888877764 45666654 3333333
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=8e-10 Score=116.40 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=148.9
Q ss_pred ecCCCEEEEEeCCCcEEEeecCCCccccc-----cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-----Cc-E
Q 004789 390 SHSGDFLVALTQTATHKLWKWQSNKQSLE-----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GS-H 458 (730)
Q Consensus 390 spdg~~L~s~s~dg~I~iWd~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-----~~-~ 458 (730)
.|.+.|+|....||.+++|+...++.... ..+.......|...-+ .......++.+. +. .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~---------~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSAD---------YSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEec---------cchHHHHhHHHHhhccCCceE
Confidence 35567899999999999999988876433 1111122222321000 011111222221 22 4
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEc--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~--~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
++-|. .|.|.+|++..|+....+. .|.+.|+++.++.+- .|.+++.|+.+..|+...+..++.++.....+.+++.
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 55566 8999999999999988887 688999999999888 9999999999999999999999999998999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-----CcEEEEE--ecCcEEEEeCCC
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAPT 607 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-----g~~l~~s--~dg~I~iwd~~~ 607 (730)
+|||..+++++ +.|++||+.+.+ .+. .+.||. ++|.+++|.-+ |.+++++ .+..|.+|-+..
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~ke-----vv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETKE-----VVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCce-----EEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999887 789999999943 344 678998 89999999887 8888884 555677776543
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.3e-09 Score=116.02 Aligned_cols=301 Identities=12% Similarity=0.169 Sum_probs=193.4
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
......|++|+....|+|+|+.||.++|..+.+......... +-.+.+-.+-+ ..+||...|.-+.|+ .+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g------laa~snLsmNQ--tLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG------LAAASNLSMNQ--TLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc------cccccccchhh--hhccCcceEEEEEeccccc
Confidence 456678999999999999999999999998876544222000 00011111111 233899999999999 55
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEc--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE-EEEcCCCCCeEEE
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 532 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~--~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l 532 (730)
.|-+.. +|-|.+|-+-.|.....+. .....|.+++|+.|| .++....||.|.+=.++..+.. +.+++ .....+
T Consensus 85 KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv 162 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHV 162 (1189)
T ss_pred cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccce
Confidence 566666 8999999998776554443 235578899999999 9999999999988877654432 12332 223478
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecc--ee-ec--ccccCCCCCCCCeEEEEEe--------cCCcEEEEE-ecC
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LH--SFQTGLVPETTIVNHIQFH--------PDQIHLLSI-HEG 598 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~--~~-i~--~~~~~h~~~~~~v~~l~~s--------pdg~~l~~s-~dg 598 (730)
.|++|.+.++.+-..|.+.+||....-..+. .+ +. ....... ..|..+.|. ||...++++ ..|
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~---~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP---TKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC---ccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 8999999888888899999999876321110 00 00 0011111 234455553 477788887 678
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---------CeEEEEECCCceEEEEeecccccCCCCc
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
.+.|..-.+......+.. .-.+..+.|+++|.+|++++.+ +.|++|.. -|+.+..+...
T Consensus 240 r~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-------- 307 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-------- 307 (1189)
T ss_pred eehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC--------
Confidence 888775544433333332 5678899999999999988864 24555543 34444554432
Q ss_pred ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 670 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 670 ~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
+..|. +++|-. .|-.+|.+ .|+.|.+=+++ ++=+|+
T Consensus 308 g~~It--~lsWEg-~gLriA~A-vdsfiyfanIR-P~ykWg 343 (1189)
T KOG2041|consen 308 GSCIT--GLSWEG-TGLRIAIA-VDSFIYFANIR-PEYKWG 343 (1189)
T ss_pred Cceee--eeEEcC-CceEEEEE-ecceEEEEeec-ccceEE
Confidence 33455 788866 45556555 46667666554 233444
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=4.6e-09 Score=114.76 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=137.4
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e--EE-EEECCC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~--l~-sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
.|.+.|...+.. +.+......+.+-.|+||| . ++ +...++ .|++.++.+++... +....+.....+|+|||+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 677777765443 3454455566788999998 4 32 343343 68888998875433 333444556789999999
Q ss_pred EEEEEeC-CC----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCc--EEEEeCCC-Cc
Q 004789 540 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN 609 (730)
Q Consensus 540 ~l~s~s~-dg----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~--I~iwd~~~-~~ 609 (730)
.|+..+. +| .+..|++..+.. ....+ +..+.. +.....+|+|||+.|+. + .+|. |+++++.. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 8887553 22 344467665311 01111 222221 23457899999998887 4 3554 55555542 22
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
....+.. +...+....|||||+.|+..+.+ ..|++||+.+++...... + ...+. ...|+| |++
T Consensus 318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~--~~~~~--~p~wSp-DG~ 383 (428)
T PRK01029 318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------S--PENKE--SPSWAI-DSL 383 (428)
T ss_pred ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------C--CCCcc--ceEECC-CCC
Confidence 2333432 24566788999999988876543 479999999987654322 1 22344 789999 788
Q ss_pred EEEEEeC---CCcEEEEeCCCCcee
Q 004789 687 RIALGLT---NGRVHVIEPLESEVE 708 (730)
Q Consensus 687 ~las~s~---Dg~I~iWd~~~~~~~ 708 (730)
+|+..+. .+.|.+|++..++..
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEE
Confidence 7775433 356888999877653
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=1e-09 Score=108.11 Aligned_cols=237 Identities=13% Similarity=0.150 Sum_probs=158.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
....|-..-+++.+.|.++|+|--.+ .++...-.. +....++.++.++++...|++|-.+|++.-+.+...-.
T Consensus 30 ~~l~~~e~gv~~~s~drtvrv~lkrd---s~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-- 102 (404)
T KOG1409|consen 30 AILIPKEEGVISVSEDRTVRVWLKRD---SGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-- 102 (404)
T ss_pred heeccCCCCeEEccccceeeeEEecc---ccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh--
Confidence 35567778899999999999998653 222211110 12468899999999999999999999998776543221
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
.-...+..+ .|...|..+-|+ .+++++++ |..+.---.+.+..+..+.-.. ..+++.+.
T Consensus 103 ---------------km~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d 164 (404)
T KOG1409|consen 103 ---------------KMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQFD 164 (404)
T ss_pred ---------------hcchhhhhh--hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCcee
Confidence 111122222 589999999999 78888888 6555433334443332221000 00011110
Q ss_pred CCCeEEEEECCCcEEEEec--CCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 495 PQDLFAFGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 495 pdg~l~sgs~dg~I~iwd~--~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
-. +.+.|...|.|.+..+ ..-..+.++.+|.+.+.+++|.+....|.+|..|..+.+||+..++. +.-...+
T Consensus 165 ~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~~el~g 238 (404)
T KOG1409|consen 165 AL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TAYELQG 238 (404)
T ss_pred eE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----eeeeecc
Confidence 00 3445555666655443 33467888999999999999999999999999999999999987432 1213456
Q ss_pred CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 004789 573 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 608 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~ 608 (730)
|. ..|..+...+.-+.+.+ +.||.|.+||+...
T Consensus 239 h~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 239 HN---DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ch---hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 66 57888888887778887 69999999998643
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=3e-10 Score=126.49 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=148.4
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCe----EEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCe
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 529 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v----~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 529 (730)
...++.++ ++.+.+||...+.....+....... .-+..+++. ++++|+.-+.|.+|+......-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 66677777 9999999998887776665443321 123345666 99999999999999988544444688999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 608 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~ 608 (730)
.++.++.||+++++.|.|.++++|++.+.+... ...-+|. +.|..++|.|+ .+++ +.|.+.++|+. ++
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 999999999999999999999999999954322 2456787 79999999998 6666 79999999977 56
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 609 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 609 ~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
..+..+..+ ....++.++..++...+++++.||.+++|++..
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 666666653 378899999999999999999999999999764
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.6e-09 Score=115.66 Aligned_cols=211 Identities=16% Similarity=0.080 Sum_probs=135.7
Q ss_pred CCCCeeEEEEe--CcEEEEee--C--CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCc--EEEEecC
Q 004789 445 PKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPC 514 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s--d--g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~--I~iwd~~ 514 (730)
+...+.+..|+ |+.|+..+ + ..|++||+.+++... +....+.....+|+||| .|+ +.+.++. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 56678889999 88888765 3 369999998876533 22223344578999999 555 4566664 8888998
Q ss_pred CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE
Q 004789 515 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 515 ~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
+++. ..+..+.......+|+|||+.|+..+. ++ .|+++|+.+++. ..+. ..+. .....+|+|||++
T Consensus 295 tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt--~~g~-----~~~~~~~SpDG~~ 363 (448)
T PRK04792 295 TKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLT--FEGE-----QNLGGSITPDGRS 363 (448)
T ss_pred CCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEe--cCCC-----CCcCeeECCCCCE
Confidence 7765 444445556778899999998876653 33 467778776542 1121 1221 2345789999999
Q ss_pred EEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEeeccccc
Q 004789 592 LLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYA 664 (730)
Q Consensus 592 l~~-s~-dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~ 664 (730)
++. +. ++ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ | .+++++.+ |.....+.
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~----- 433 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP----- 433 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc-----
Confidence 987 33 33 4677888777643 33321 122345899999988766544 3 47788874 44444443
Q ss_pred CCCCcccceeeEEEEEec
Q 004789 665 QPGTISLELYPLVIAAHP 682 (730)
Q Consensus 665 ~~gh~~~~v~~~~v~~sp 682 (730)
.+ .+.+. ..+|+|
T Consensus 434 --~~-~g~~~--~p~Wsp 446 (448)
T PRK04792 434 --AG-QGEVK--SPAWSP 446 (448)
T ss_pred --CC-CCCcC--CCccCC
Confidence 11 23355 678887
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=3.2e-09 Score=102.58 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=164.5
Q ss_pred CCCCeeEEEEe-----Cc-EEEEee-CCEEEEEEcCCceEEEEEcCCCC------CeEEEEEcCCC-eEEEEECCCcEEE
Q 004789 445 PKDSISCFALR-----GS-HLFSAS-GGKISIFSLETFQTLATFANPPP------IATYFILLPQD-LFAFGFDDSSILV 510 (730)
Q Consensus 445 h~~~V~~l~~s-----~~-~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~------~v~~i~~spdg-~l~sgs~dg~I~i 510 (730)
....+..+.|. |. .++-+. .|.|.++..........+.+-.. ...++.|++.+ .++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 34567777777 44 344444 79999998766555555543211 24578899999 9999999999997
Q ss_pred EecCCCceE--EEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec
Q 004789 511 HCPCTKKTK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 587 (730)
Q Consensus 511 wd~~~~~~~--~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp 587 (730)
-+....... +.++.|...++...|+. +.+.+.+|+.|+.+..||++... ..+..-..-|. ..|.+|.-+|
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~----~~i~~n~kvH~---~GV~SI~ss~ 220 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK----TFIWHNSKVHT---SGVVSIYSSP 220 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc----ceeeecceeee---cceEEEecCC
Confidence 776655443 48899999999999976 34688999999999999999421 22222334455 6788998887
Q ss_pred -CCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCceEEEEeeccc
Q 004789 588 -DQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDG--KCIYVSCKSGHVKVFDTSTLELRCQINLTA 662 (730)
Q Consensus 588 -dg~~l~~s-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 662 (730)
.+.++++| .|..|++||.++ ++++..-. ..+.|+.+..+|.- .+|+++-.+| .+|-+...+... +....
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e--~~~~~ 294 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE--FQIVL 294 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc--hheee
Confidence 57788885 899999999984 56654433 37899999999843 3444544444 567776654332 11111
Q ss_pred ccCCCCcccceeeEEEEEecCCCCEEEEEe-CCCcEE-EEeCCCCc
Q 004789 663 YAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVH-VIEPLESE 706 (730)
Q Consensus 663 ~~~~gh~~~~v~~~~v~~sp~~~~~las~s-~Dg~I~-iWd~~~~~ 706 (730)
....+| .+-++ .-.|.. ....||||+ .|..++ +|-.-+++
T Consensus 295 ~s~~~h-dSl~Y--G~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 295 PSDKIH-DSLCY--GGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred eccccc-cceee--cccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 111244 43455 667755 346789876 577755 77766654
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=5.6e-09 Score=115.17 Aligned_cols=211 Identities=13% Similarity=0.078 Sum_probs=139.1
Q ss_pred CCCCeeEEEEe--CcEEEEee-C---CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCC--cEEEEecC
Q 004789 445 PKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCPC 514 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-d---g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg--~I~iwd~~ 514 (730)
+...+...+|+ |+.|+..+ + ..|.+||+.+++... +....+.+....|+||| .|+ +.+.++ .|++||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66778899999 88887766 3 379999999886543 33334455578999999 665 455555 68889998
Q ss_pred CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE
Q 004789 515 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 515 ~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
+++.. .+..+........|+|||+.|+..+. ++ .|+++|+.+++.. .+. ..+ .......|+|||+.
T Consensus 276 ~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt--~~~-----~~~~~~~~Spdg~~ 344 (430)
T PRK00178 276 SRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVT--FVG-----NYNARPRLSADGKT 344 (430)
T ss_pred CCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eee--cCC-----CCccceEECCCCCE
Confidence 87653 45555556677899999998876654 33 5777888775421 111 112 12346789999999
Q ss_pred EEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEeeccccc
Q 004789 592 LLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYA 664 (730)
Q Consensus 592 l~~-s-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~ 664 (730)
++. + .++ .|.+||+.+++.. .+.. ........|+|||+.++..+.+ ..|+++++..+. ...+..
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~-~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~---- 415 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVR-ILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPT---- 415 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEE-EccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcC----
Confidence 987 3 233 4889999877643 3332 1122356899999998876654 357778876443 333321
Q ss_pred CCCCcccceeeEEEEEec
Q 004789 665 QPGTISLELYPLVIAAHP 682 (730)
Q Consensus 665 ~~gh~~~~v~~~~v~~sp 682 (730)
+ .+.+. ..+|+|
T Consensus 416 ---~-~g~~~--~p~ws~ 427 (430)
T PRK00178 416 ---A-QGEVR--EPSWSP 427 (430)
T ss_pred ---C-CCCcC--CCccCC
Confidence 1 33455 677877
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=7.7e-09 Score=112.98 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=131.7
Q ss_pred CCCcEEEEEEecCCCEEE---EEeCCC--cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 380 FGGRVVRLIYSHSGDFLV---ALTQTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~---s~s~dg--~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
....+.+-+|||||+.++ +...+| .|.+.++.+++. .+.. ...+.....+|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---------------------~~lt---~~~g~~~~p~w 238 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---------------------KKIL---ALQGNQLMPTF 238 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---------------------eEee---cCCCCccceEE
Confidence 445667889999998532 343444 455555544432 1111 13334456789
Q ss_pred e--CcEEEEee--CC----EEEEEEcCCc---eEEEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCc--EEEEecCC-Cce
Q 004789 455 R--GSHLFSAS--GG----KISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPCT-KKT 518 (730)
Q Consensus 455 s--~~~l~s~s--dg----~I~vwd~~t~---~~~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~--I~iwd~~~-~~~ 518 (730)
+ |+.|+..+ +| .+..|++.++ ........+.......+|+||| .|+..+ .+|. |+++++.. +..
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 8 87877665 23 3444777653 3333333333445678999999 666555 4664 44445542 333
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~d---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.. .+ ..+ . ..+....|+|||+.|+.
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~L---t~~-~---~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---QL---TTS-P---ENKESPSWAIDSLHLVYS 388 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---Ec---cCC-C---CCccceEECCCCCEEEEE
Confidence 45555555667889999999998876543 46999999886431 11 122 1 34667999999999886
Q ss_pred E---ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 595 I---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 595 s---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
+ ....|+++|+.+++....... .+.+...+|+|-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEEeecC---CCcccCceecCCC
Confidence 3 235699999987765443322 4556678888743
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.6e-08 Score=101.95 Aligned_cols=227 Identities=13% Similarity=0.116 Sum_probs=154.9
Q ss_pred EEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCE
Q 004789 388 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGK 466 (730)
Q Consensus 388 ~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~ 466 (730)
..+.||+.++. +..|.|.+||-++..........+ .--+++..++. ....-....+.. |++++..+.|.
T Consensus 273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lp---l~rk~k~~k~~------~pskyledfa~~~Gd~ia~VSRGk 342 (668)
T COG4946 273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLP---LDRKKKQPKFV------NPSKYLEDFAVVNGDYIALVSRGK 342 (668)
T ss_pred ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCc---ccccccccccc------CHHHhhhhhccCCCcEEEEEecCc
Confidence 35668886554 466789999987776532200000 00000000000 011112223334 99999999999
Q ss_pred EEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC-cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEE
Q 004789 467 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 544 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 544 (730)
..+.+...+-.++. ++.+.|.-..+.-++ .++.|..|| .+-|+|.++++. +.+...-+.|.++..+++|+.++.+
T Consensus 343 aFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vva 419 (668)
T COG4946 343 AFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVA 419 (668)
T ss_pred EEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEE
Confidence 99988776655543 567778888888888 899999999 899999987765 4555567889999999999999999
Q ss_pred eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec----CcEEEEeCCCCceeeeecCCCC
Q 004789 545 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLNHTSQLVPDKM 619 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d----g~I~iwd~~~~~~~~~~~~~~h 619 (730)
.....|.++|+.++.. +.+ ..... +-|+.++|+|+++++|-+ -+ ..|++||+.+++....-..
T Consensus 420 Ndr~el~vididngnv---~~i---dkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--- 487 (668)
T COG4946 420 NDRFELWVIDIDNGNV---RLI---DKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--- 487 (668)
T ss_pred cCceEEEEEEecCCCe---eEe---ccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---
Confidence 9889999999999653 222 23333 689999999999999975 33 4699999988776654433
Q ss_pred CCCeEEEEEecCCCEEEEEE
Q 004789 620 DLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs 639 (730)
.+.=.+.+|.|||++|+--+
T Consensus 488 ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccccCcccCCCCcEEEEEe
Confidence 33345567777887766443
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.8e-07 Score=93.72 Aligned_cols=247 Identities=14% Similarity=0.150 Sum_probs=163.4
Q ss_pred CCCCCeeEEEEe--CcEEEEee-C---CEEEEEEcCC--ceEEE--EEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLET--FQTLA--TFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 511 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-d---g~I~vwd~~t--~~~~~--~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iw 511 (730)
.....++-++|+ ++.|.++. + |.|.-|.++. |+... .......+-+.++++++| +++++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 356777889999 66777776 3 6677776654 54322 222233344789999999 777665 45789999
Q ss_pred ecCC-Cce---EEEEcCCCCC----------eEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 512 CPCT-KKT---KAKLKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 512 d~~~-~~~---~~~~~~h~~~----------V~~l~~spd~~~l~s~s~-dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
-++. |.+ +..+ .|.+. +....+.|++++|++.+. -..|.+|++..+......... +..|
T Consensus 117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G---- 190 (346)
T COG2706 117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG---- 190 (346)
T ss_pred EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC----
Confidence 9865 432 2222 25554 888999999999988764 347899999987654444433 3333
Q ss_pred CCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC--c--eeeeecCC--C--CCCCeEEEEEecCCCEEEEEEcC-CeEE
Q 004789 577 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--N--HTSQLVPD--K--MDLPITYATYSCDGKCIYVSCKS-GHVK 645 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~--~--~~~~~~~~--~--h~~~v~~~~~spdg~~l~sgs~d-g~I~ 645 (730)
..-+.|.|+|++++.++ + -+++|.+|..... + .++.+..- . .......+.+++||++|+++..- ..|.
T Consensus 191 -~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 -AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred -CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 46789999999999988 5 7899999998763 2 22222110 1 14566778889999999988653 5788
Q ss_pred EEECCC--ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCc
Q 004789 646 VFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLESE 706 (730)
Q Consensus 646 iwd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D-g~I~iWd~~~~~ 706 (730)
+|.+.. +++. ..... + .....+-.+.++| ++++|+++..| ..|.+|......
T Consensus 270 ~f~V~~~~g~L~-~~~~~---~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 270 VFSVDPDGGKLE-LVGIT---P----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEcCCCCEEE-EEEEe---c----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCC
Confidence 887764 3322 22110 0 1112233788999 78998888855 478888876543
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=6e-09 Score=100.72 Aligned_cols=270 Identities=14% Similarity=0.074 Sum_probs=165.2
Q ss_pred CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec---CCC-EEEEEeCCCcEEEeecCCCccccccccccceeeE
Q 004789 353 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 428 (730)
Q Consensus 353 dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp---dg~-~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i 428 (730)
.|.+.++++.+..... ...+.- ..++.+..+.|.. +|. .|+-+-.+|.|.++........ ..
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----------~~ 110 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----------VH 110 (339)
T ss_pred ccceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceee----------ee
Confidence 4788888887544332 111111 1356677788874 455 4566667888988865433220 01
Q ss_pred ecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEE--EEEcCCCCCeEEEEEcCCC--eEEE
Q 004789 429 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD--LFAF 501 (730)
Q Consensus 429 ~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~--~~~~~~~~~v~~i~~spdg--~l~s 501 (730)
..+-+.+-+ ......++.|+ +..++++. +|.+.+-+....... ++++.|.-.++...|+... .+++
T Consensus 111 L~~ls~~ki-------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 111 LRGLSSKKI-------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ecccchhhh-------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence 111111000 01123466677 66677776 898886665555443 4788999999999998766 8999
Q ss_pred EECCCcEEEEecC-CCceEEE-EcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCC
Q 004789 502 GFDDSSILVHCPC-TKKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 502 gs~dg~I~iwd~~-~~~~~~~-~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.++++|+.|-.|++||.++- .+++.....+ +
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~-----G 254 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG-----G 254 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----c
Confidence 9999999999999 3444433 345888999998877 5789999999999999999962 2444322222 7
Q ss_pred CeEEEEEecC--CcEEEEEecCcEEEEeCCCCcee---eeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEE-EEECCC
Q 004789 579 IVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTST 651 (730)
Q Consensus 579 ~v~~l~~spd--g~~l~~s~dg~I~iwd~~~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~-iwd~~~ 651 (730)
.|+.+.++|. ++.++++.-+..+|.+...+... ....-..|.+-+....|.....+|++++ .|..++ +|-.-+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 8999999994 33444454455666666543221 1111113455555555533335677644 355544 554444
Q ss_pred c
Q 004789 652 L 652 (730)
Q Consensus 652 ~ 652 (730)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 3
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=1.8e-07 Score=97.53 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=142.1
Q ss_pred CCEEEEEEcCCceEEEEEcCCCC-------CeEEEEEcCCC-eEEEEE-C-CCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 464 GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~~-------~v~~i~~spdg-~l~sgs-~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
++.|.+||..+++.+..+..... ....++++||| ++++.. . +..|.+.|+.+++.+..+.- .+...-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEE
Confidence 47999999999999998874322 23478999999 777665 3 68999999999999988864 22222222
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe-EEEEEec-CCcEEEEEecCcEEEEeCCCC---
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHP-DQIHLLSIHEGQIDVYEAPTL--- 608 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v-~~l~~sp-dg~~l~~s~dg~I~iwd~~~~--- 608 (730)
.+++...+ -+.||......+...-........ ++.+.. .++ ..-.|.+ +|+++.++..|.|.+.|+...
T Consensus 155 t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~-vf~~~~---~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 155 TANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTE-VFHPED---EYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ecCCccEE--EeecCceEEEEecCCCceEEeeee-eecCCc---cccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 22222221 223444444333221111111111 111100 001 0114566 899999987799999996432
Q ss_pred --ceeeeecCC-----CCCCCeEEEEEecCCCEEEEEEc----------CCeEEEEECCCceEEEEeecccccCCCCccc
Q 004789 609 --NHTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISL 671 (730)
Q Consensus 609 --~~~~~~~~~-----~h~~~v~~~~~spdg~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~ 671 (730)
+....+... -..+.+.-++++++++.+++... .+.|.++|..+++.+..+.. | .
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G---~ 299 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL------G---H 299 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC------C---C
Confidence 223222111 01233444999999999888532 25799999999999988864 3 2
Q ss_pred ceeeEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCcee
Q 004789 672 ELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 708 (730)
Q Consensus 672 ~v~~~~v~~sp~~~~-~las~s-~Dg~I~iWd~~~~~~~ 708 (730)
.++ .++++| |++ +|.+.. .++.|.+.|..+++..
T Consensus 300 ~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 300 EID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred cee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 466 899999 777 766555 6788999999998764
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.5e-08 Score=106.98 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=137.8
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEe------c--------------CCCEEEEEe
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT 400 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fs------p--------------dg~~L~s~s 400 (730)
.|-+.++|....||.+|+|+........++.... .-++...+..|. | +...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 3457889999999999999997422111111110 012333333332 1 112344444
Q ss_pred CCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceE
Q 004789 401 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 477 (730)
Q Consensus 401 ~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~ 477 (730)
..|.|.+|++. .|++......++|.+.|.++.++ -..|.+++ |+.+..|+..++..
T Consensus 78 ~~g~v~~ys~~---------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 78 PQGSVLLYSVA---------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred CCccEEEEEec---------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 45555555544 44444444445799999999999 66788888 99999999999999
Q ss_pred EEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC-----CCEEEEE-eCCCcE
Q 004789 478 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVSS-GADAQL 550 (730)
Q Consensus 478 ~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd-----~~~l~s~-s~dg~I 550 (730)
++.+.+....+.+++++||| .+++++ +.|++||+++++.+..|.||.++|++++|.-+ |.+++++ ..+..|
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 99999999999999999999 888887 58999999999999999999999999999876 6666553 445667
Q ss_pred EEEEcCC
Q 004789 551 CVWDAVG 557 (730)
Q Consensus 551 ~vwd~~~ 557 (730)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7886655
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=3.9e-08 Score=100.73 Aligned_cols=193 Identities=11% Similarity=0.068 Sum_probs=132.6
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCC-C---CCCCcEEEEE-Eec-CCCEEEEEeCCCcEEEeecCC
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-N---SFGGRVVRLI-YSH-SGDFLVALTQTATHKLWKWQS 412 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~-~---gh~~~V~~v~-fsp-dg~~L~s~s~dg~I~iWd~~~ 412 (730)
..+.||+.++.. ..|.|.++|....+..+.-.-+.+.. . -...+..-+. |++ +|.+++..|.. ...|.+
T Consensus 273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~~--- 347 (668)
T COG4946 273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIMR--- 347 (668)
T ss_pred ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEEC---
Confidence 357799998865 44899999986433221111111110 0 0112222222 444 67877777654 333322
Q ss_pred CccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CC-EEEEEEcCCceEEEEEcCCCCCe
Q 004789 413 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-KISIFSLETFQTLATFANPPPIA 488 (730)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg-~I~vwd~~t~~~~~~~~~~~~~v 488 (730)
+..+..++. +|...|.-..+. ++-++.|. || .+-|+|..+++. +.+...-+.|
T Consensus 348 ------------------~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I 404 (668)
T COG4946 348 ------------------PWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNI 404 (668)
T ss_pred ------------------CCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccce
Confidence 222333332 577888888887 67788888 77 999999987765 4455677889
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEEcCCCc
Q 004789 489 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWK 559 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg----~I~vwd~~~~~ 559 (730)
.++..+++| .++++.....|.+.|+.+|.....-+...+-|+.++|+|+++++|-+--+| .|+++|+.+++
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 999999999 888888888999999999987665566778899999999999999876655 68999998854
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=2.4e-07 Score=109.46 Aligned_cols=333 Identities=14% Similarity=0.121 Sum_probs=188.3
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+.+|...++.+..+|.|-+...+.......+-..- .-...|.+++||||+..|+..+.++++.+-+-
T Consensus 81 ~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~------- 149 (928)
T PF04762_consen 81 FQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGEGNLLLMTR------- 149 (928)
T ss_pred EEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-------
Confidence 4788999999999999999998332211122221111 14678999999999999999999998887542
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCEE--E-EEEcCCc-eEEEEEcCCCCCeEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKI--S-IFSLETF-QTLATFANPPPIATYFI 492 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~I--~-vwd~~t~-~~~~~~~~~~~~v~~i~ 492 (730)
-|++-....+..... +....| .+-|- .+.=+-|+.|.- + .=|.... .....+. ....-..++
T Consensus 150 ----------~fd~i~E~~l~~~~~-~~~~~V-sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 150 ----------DFDPISEVPLDSDDF-GESKHV-SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred ----------cceEEEEeecCcccc-CCCcee-eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 122211111100000 011111 22222 111111111100 0 0000000 0001122 334455899
Q ss_pred EcCCC-eEEEEEC---C---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCceec
Q 004789 493 LLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLC 562 (730)
Q Consensus 493 ~spdg-~l~sgs~---d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---dg~I~vwd~~~~~~~~ 562 (730)
|-.|| ++|+.+. . ..|+||+-+ |....+-+.-.+--.+++|.|.|+++|+... ...|.+|.-++ ..-.
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-Lrhg 294 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHG 294 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEee
Confidence 99999 8888764 2 479999955 6655444433444457899999999998764 34566676554 2211
Q ss_pred ceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEecC-CCEEEEEE
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCD-GKCIYVSC 639 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~spd-g~~l~sgs 639 (730)
...+. . .... ..|..++|++|+..||+.....|.+|-..+... .+.+... ....+..+.|+|. ...|...+
T Consensus 295 eF~l~-~-~~~~---~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 295 EFTLR-F-DPEE---EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred eEecC-C-CCCC---ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEe
Confidence 22222 1 1222 579999999999999996555599999877542 2333321 2444555999984 45577777
Q ss_pred cCCeEEEEEC----CCc--------eEEEEeecc---------cccCC--CC----cccceeeEEEEEecCCCCEEEEEe
Q 004789 640 KSGHVKVFDT----STL--------ELRCQINLT---------AYAQP--GT----ISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 640 ~dg~I~iwd~----~~~--------~~~~~~~~~---------~~~~~--gh----~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+|.+..++. ..+ ..+.++... ..+|. .+ -...|. +++|++ ++..+|+-.
T Consensus 369 ~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~--~vaf~~-~~~~~avl~ 445 (928)
T PF04762_consen 369 SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN--DVAFSP-SNSRFAVLT 445 (928)
T ss_pred cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE--EEEEeC-CCCeEEEEE
Confidence 7677655442 211 112222210 00111 00 123455 999999 677799999
Q ss_pred CCCcEEEEeCCCC
Q 004789 693 TNGRVHVIEPLES 705 (730)
Q Consensus 693 ~Dg~I~iWd~~~~ 705 (730)
.||.|.+|.....
T Consensus 446 ~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 446 SDGSLSIYEWDLK 458 (928)
T ss_pred CCCCEEEEEecCC
Confidence 9999999997654
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=1.5e-07 Score=97.60 Aligned_cols=271 Identities=15% Similarity=0.119 Sum_probs=178.8
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 458 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~ 458 (730)
.-++..++|||.|.+|++.... .|.+|.-..... +.+. ....|..+.|+ ++|
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~--------------------l~~~-----~~~~V~~~~fSP~~kY 85 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAK--------------------LVRF-----RHPDVKYLDFSPNEKY 85 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhh--------------------eeee-----ecCCceecccCcccce
Confidence 5678899999999988876555 577886543321 2221 23567888888 888
Q ss_pred EEEee----------------CCEEEEEEcCCceEEEEEcCCCCC--eE-EEEEcCCC-eEEEEECCCcEEEEecCCCce
Q 004789 459 LFSAS----------------GGKISIFSLETFQTLATFANPPPI--AT-YFILLPQD-LFAFGFDDSSILVHCPCTKKT 518 (730)
Q Consensus 459 l~s~s----------------dg~I~vwd~~t~~~~~~~~~~~~~--v~-~i~~spdg-~l~sgs~dg~I~iwd~~~~~~ 518 (730)
|.+-+ ++.+.+||+.+|..+..+.....+ .+ -+.|+-++ ++|-. ....++|+++ ++..
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcc
Confidence 88743 235899999999999999876555 44 67888887 44433 3457999997 3322
Q ss_pred -EEEEcC-CCCCeEEEEEeCCCC--EEEE-----EeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC
Q 004789 519 -KAKLKG-HQNRITCLAYSLSLN--VLVS-----SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 519 -~~~~~~-h~~~V~~l~~spd~~--~l~s-----~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg 589 (730)
...+.. ....|....|+|.++ .|+. .+.++.+++|.+..+.......+. . ..-..+.|.+.|
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf---k------~~~~qLkW~~~g 234 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF---K------VSGVQLKWQVLG 234 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE---e------ecccEEEEecCC
Confidence 111111 135688889999643 3443 456788999999865544333332 1 123368899999
Q ss_pred cEEEE-E--e---------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE--EEEcCCeEEEEECCCceEE
Q 004789 590 IHLLS-I--H---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY--VSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 590 ~~l~~-s--~---------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~--sgs~dg~I~iwd~~~~~~~ 655 (730)
+++++ . . +..++|++++... +.... .-.++|...+|.|.++.++ +|-.+..+.++|++.. ++
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~ 310 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR 310 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccc-cceec--cccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence 98875 2 1 1358899886333 32222 2378999999999887665 4457889999999876 33
Q ss_pred EEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCC
Q 004789 656 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLES 705 (730)
Q Consensus 656 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D---g~I~iWd~~~~ 705 (730)
..+. ...-+ .+.|+| .+++++.++-| |.|-+|+....
T Consensus 311 ~~~P----------e~~rN--T~~fsp-~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 311 FYFP----------EQKRN--TIFFSP-HERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred EecC----------Ccccc--cccccC-cccEEEEecCCccccceEEeccCCc
Confidence 3332 12233 567888 67888877755 57888887655
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2.5e-07 Score=111.39 Aligned_cols=255 Identities=11% Similarity=0.032 Sum_probs=158.2
Q ss_pred eEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcC-C-------------CCCeEEEEEcCCC-eEEEEEC-CCcEE
Q 004789 450 SCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN-P-------------PPIATYFILLPQD-LFAFGFD-DSSIL 509 (730)
Q Consensus 450 ~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~-~-------------~~~v~~i~~spdg-~l~sgs~-dg~I~ 509 (730)
..++++ +..+++-. ++.|++||.. +..+..+.. . -.....+++.+++ .|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 456776 44555545 7899999986 444444332 1 1124688999988 6666554 56899
Q ss_pred EEecCCCceEEEEcCC-----------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceeccee--eccc
Q 004789 510 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSF 569 (730)
Q Consensus 510 iwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~--i~~~ 569 (730)
++|..++. +.++.+- -.....++++| ++..+++.+.++.|++||..++....... ....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987764 3333210 12346799999 56666777778999999998753211000 0000
Q ss_pred ccCCC---CCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecC-----------CC--------CCCCeEE
Q 004789 570 QTGLV---PETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP-----------DK--------MDLPITY 625 (730)
Q Consensus 570 ~~~h~---~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~~~~~~~-----------~~--------h~~~v~~ 625 (730)
..++. ........++++|++..|+++ .++.|++||+.++......-+ .. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 00100 000245679999999877663 678999999987653211100 00 0113468
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccc-cCCCCc--ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 626 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY-AQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 626 ~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~~~gh~--~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
++++++|.++++-+.++.|++||..++........... ...|.. ..--.+..+++++ +++++++.+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 89999999888888899999999998876543321000 000000 0001244899999 8899999999999999999
Q ss_pred CCCce
Q 004789 703 LESEV 707 (730)
Q Consensus 703 ~~~~~ 707 (730)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88754
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=6.7e-08 Score=103.37 Aligned_cols=277 Identities=10% Similarity=0.076 Sum_probs=185.3
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCccee----------eeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcE
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR----------TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 405 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~----------~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I 405 (730)
.+.+...+..++|+||.||.+++-.+.......... .-++ .||.+.|.-+.|+.+.+.|-++..+|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL--eGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL--EGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh--ccCcceEEEEEeccccccccccCCCceE
Confidence 345667788999999999999999886433221111 1112 4699999999999999999999999999
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEE-EEE
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATF 481 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~-~~~ 481 (730)
.||-+-.+..... + +.....+.|.+++|+ |..++..- ||.|.+=.++..+.- +.+
T Consensus 96 iVWmlykgsW~EE-----------------M----iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEE-----------------M----INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred EEEeeecccHHHH-----------------H----hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence 9998766653211 0 111245678899999 88888888 888887766543221 111
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-------ceEEE----EcCCCCCeEEEEEe--------CCCCEE
Q 004789 482 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTKAK----LKGHQNRITCLAYS--------LSLNVL 541 (730)
Q Consensus 482 ~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-------~~~~~----~~~h~~~V~~l~~s--------pd~~~l 541 (730)
+ ......+.|++|. .++.+-..|.+++||.... .+... +......|-.+.|. ||...+
T Consensus 155 k--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 155 K--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred c--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 1 1223478999999 7777888899999997643 12111 11122335566663 477789
Q ss_pred EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec---------CcEEEEeCCCCcee
Q 004789 542 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHT 611 (730)
Q Consensus 542 ~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d---------g~I~iwd~~~~~~~ 611 (730)
+.+...|.+.+-.-.+.. .++- +..+ -.+..+.|+++|..|++ |.+ +.|.+|.. -|+.+
T Consensus 233 avcy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~ 301 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIV 301 (1189)
T ss_pred EEEEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhhe
Confidence 999999988876544421 2222 2223 25788999999999998 422 24666665 47777
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
.++... +..|++++|-..|-.++.+ -|+.|++=+++.
T Consensus 302 gtlkvp--g~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 302 GTLKVP--GSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred EEEecC--CceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 777754 7789999998777666655 467776666553
No 274
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=4.6e-07 Score=98.66 Aligned_cols=303 Identities=9% Similarity=-0.015 Sum_probs=175.6
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCC--C----CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS--F----GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~g--h----~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
.+..+.+++.+|.+.-+|... +...-+..+.... + ...+.+ ...-++..++.++.+|.+..+|.++++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~v~v~~~~g~l~ald~~tG~~- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADT---GKEIWSVDLSEKDGWFSKNKSALLSG-GVTVAGGKVYIGSEKGQVYALNAEDGEV- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCC---CcEeeEEcCCCccccccccccccccc-ccEEECCEEEEEcCCCEEEEEECCCCCC-
Confidence 355666777777777777652 2233333221100 0 000000 0011345678888899999999888875
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCe-----E
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----T 489 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v-----~ 489 (730)
+|....+. .+. +....+..++.+. +|.+..+|.++|+.+..+......+ .
T Consensus 143 -----------~W~~~~~~------------~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 143 -----------AWQTKVAG------------EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred -----------cccccCCC------------ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 56543221 111 1122355555666 8999999999999988876432111 1
Q ss_pred EEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCC-------CeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCce
Q 004789 490 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 490 ~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-------~V~~l~~sp--d~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
+.... ++.++.++.++.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+++.
T Consensus 200 sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 200 APATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 11111 23566778889999999999987655431100 011111122 245677778899999999999764
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
.....+. ....+.. ++..+++ +.+|.+..+|..+++.+-...... .....+... .+..|+.++
T Consensus 279 ~W~~~~~-----------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 279 VWKREYG-----------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred EEeecCC-----------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECCEEEEEe
Confidence 3322211 1112222 2344444 688999999999988754432111 111222222 256788899
Q ss_pred cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 640 KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 640 ~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
.||.|++.|..+|+.+...... ...+.. ...+ .+..|+.++.||.|..++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~---~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVV---ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEE---ECCEEEEEeCCceEEEEeC
Confidence 9999999999999988776531 111221 1111 2357888899999988765
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2e-07 Score=101.20 Aligned_cols=210 Identities=10% Similarity=0.008 Sum_probs=132.3
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e-EEEEECC---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~-l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
..|.+-|..... .+.+.... .+....|+||| . ++..+.+ ..|+++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 356666654333 33343333 67789999999 5 6654443 479999998886644433 455666788999998
Q ss_pred EEEEE-eC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEec--C--cEEEEeCCCCceee
Q 004789 540 VLVSS-GA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTS 612 (730)
Q Consensus 540 ~l~s~-s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~d--g--~I~iwd~~~~~~~~ 612 (730)
.++.. +. +..|.++|+.+++. ..+. .. . +......|+|||+.|+...+ + .|+++|+.+++..+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~---~~LT---~~-~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL---TQIT---NY-P---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE---EEcc---cC-C---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 77654 33 35688889877542 1221 11 1 12335689999998887432 2 69999998777643
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcC---------CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 683 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 683 (730)
.... + . . ...|||||++|+..+.. ..|++.|+.++.... +.. + .... ...|+|
T Consensus 316 lt~~-g-~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~------~---~~~~--~p~~SP- 377 (419)
T PRK04043 316 VVFH-G-K-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA------N---GVNQ--FPRFSS- 377 (419)
T ss_pred CccC-C-C-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC------C---CCcC--CeEECC-
Confidence 3321 1 1 1 24899999988866543 378889998887533 321 1 1122 578999
Q ss_pred CCCEEEEEeCC-C--cEEEEeCCCC
Q 004789 684 EPNRIALGLTN-G--RVHVIEPLES 705 (730)
Q Consensus 684 ~~~~las~s~D-g--~I~iWd~~~~ 705 (730)
||++++..+.+ + .+.+.++...
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCCC
Confidence 88887766543 2 3566666543
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=126.02 Aligned_cols=178 Identities=13% Similarity=0.191 Sum_probs=139.7
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
..-|-..+-+||+.||.|++|.... +..+...... -...|+.+.|+.+|+.+..+..||.+.+|.......
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt~---g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~--- 2285 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGH---GQQVVCFRTA---GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY--- 2285 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccC---CCeEEEeecc---CcchhhhhhhcccCCceeeeccCCceeecccCCcce---
Confidence 3456667888999999999999973 3333333322 248999999999999999999999999998653221
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee----CCEEEEEEcCC--c-eEEEEEcCCCCCeEEE
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLET--F-QTLATFANPPPIATYF 491 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s----dg~I~vwd~~t--~-~~~~~~~~~~~~v~~i 491 (730)
.-|+ .|......+.|-+..+++++ ++.+.+||..- + .++. ..|.+.++++
T Consensus 2286 --------~s~q-------------chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2286 --------TSWQ-------------CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVL 2342 (2439)
T ss_pred --------eccc-------------cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEE
Confidence 1122 58888888888888888776 47999999643 2 2333 7899999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~ 558 (730)
++.|.. .|++|+.+|.|++||++..+.++.++. +. ...++++|+..|.|+||++...
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999 999999999999999998888777763 33 4568999999999999999884
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=2.4e-09 Score=114.68 Aligned_cols=282 Identities=13% Similarity=0.085 Sum_probs=182.0
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCC--CCeeEEEEe---
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR--- 455 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~--~~V~~l~~s--- 455 (730)
.+++.++..+|.|+-+|.++.-|...+ |+...- .+..| + .|. -.|..+.|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~----------~ppr~-------l------~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPF----------TPPRW-------L------HHITPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEE-eccCCC----------CCcee-------e------eccCcchhcceecccCC
Confidence 567888999999999999988775433 433221 11111 1 122 235566777
Q ss_pred --CcEEEEeeCCEEEEEEcCC---ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC-ceEEEEcCCCC
Q 004789 456 --GSHLFSASGGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQN 527 (730)
Q Consensus 456 --~~~l~s~sdg~I~vwd~~t---~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~ 527 (730)
..++++.+...-.+|++.. ...-..+-+|..+|+.+.|+|+. .+++++.|..+..||+++. .++..+..-..
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 4456776777777888753 23344566899999999999998 9999999999999999976 45555555455
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-CcEEEE-EecCcEEEEeC
Q 004789 528 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYEA 605 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~-s~dg~I~iwd~ 605 (730)
....++|+.....+.+.+..+.|++||++.+. .++. ..++|. ..|..++|..- ...+.+ +.|++++.||.
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~-s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLC-SLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCC----cceE-Eecccc---eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 67789998755555556778889999999863 4444 455566 67888888763 223444 69999999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCC--EEEEEEcCCeEEEEEC---------CC-ceEEEEeecccccCCCCcccce
Q 004789 606 PTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDT---------ST-LELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 606 ~~~~~~~~~~~~~h~~~v~~~~~spdg~--~l~sgs~dg~I~iwd~---------~~-~~~~~~~~~~~~~~~gh~~~~v 673 (730)
........... ....+|+..++-|-|. ++.---.+..+.+++- .+ .+.+..+. ||.+ .|
T Consensus 232 ~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-------GH~D-~V 302 (1081)
T KOG0309|consen 232 SKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-------GHDD-VV 302 (1081)
T ss_pred cccccccceec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-------Ccch-HH
Confidence 65432212111 1267788888877443 3322112223444333 22 23445554 7743 34
Q ss_pred eeEEEEEecC---------CCCEEEEEeCCCcEEEEeCCCC
Q 004789 674 YPLVIAAHPL---------EPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 674 ~~~~v~~sp~---------~~~~las~s~Dg~I~iWd~~~~ 705 (730)
. .+-|-.. ..-+|+|-+.|..+++|-+.+.
T Consensus 303 ~--eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 303 L--EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred H--HHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 3 3333221 1237999999999999998653
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=125.68 Aligned_cols=193 Identities=13% Similarity=0.234 Sum_probs=154.4
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCce
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 518 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~ 518 (730)
.+-..|.++.-+ ..+.++|+ ||.|++|....++.+..+. .....|+.+.|+.+| .+.++..||.+.+|... .++
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 355667777766 67788888 9999999999998888776 234789999999999 99999999999999977 667
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s---~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
...++.|....+++.|-. ..+++++ .++.+.+||..-... ... +...|. +.++++++.|..+.|++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~--~s~---v~~~H~---~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM--NSL---VHTCHD---GGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--cce---eeeecC---CCceEEEEcCcceEEEec
Confidence 777888998888988875 5666654 468899999764211 112 236677 78999999999999999
Q ss_pred EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 595 IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 595 s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
|.+|.|++||++..+.++++.. +. ...++++|+..|.|+||++..-..+..+.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 5999999999998888777642 33 46789999999999999999877776664
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.00 E-value=1.9e-08 Score=99.20 Aligned_cols=239 Identities=13% Similarity=0.140 Sum_probs=165.5
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEc-CCceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecC---
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSL-ETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--- 514 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~-~t~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~--- 514 (730)
||.+.|+....- .+-+++.+ |.++++|-- +.++.-..+. .-..+++++.+.+.. .|++|-..|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 677777765555 66788888 899999954 3444433333 235678899999999 99999999999888654
Q ss_pred -CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE
Q 004789 515 -TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 593 (730)
Q Consensus 515 -~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~ 593 (730)
....++.+..|..+|..+.|+....++++.+.|..+.---.+.+.......+. ..-+++.+.-. +..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----------~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----------TPASALQFDAL--YAF 169 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----------ccCCCCceeeE--EEE
Confidence 34556667779999999999999999999999988754444444332222222 01111111111 333
Q ss_pred EE-ecCcEEEEeC--CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcc
Q 004789 594 SI-HEGQIDVYEA--PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 594 ~s-~dg~I~iwd~--~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 670 (730)
+| ..|.|.+-.+ .....+.++. +|.+.+.+.+|.+....|++|..|..+.+||+...+-+.-.. -|| .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el------~gh-~ 240 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL------QGH-N 240 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee------ccc-h
Confidence 34 4455444333 3445555564 579999999999999999999999999999997655433221 166 4
Q ss_pred cceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+.|. .+.+-+ .-+.+.+++.||.|-+|++....
T Consensus 241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhh--hhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 4577 666666 56789999999999999998653
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=4.3e-07 Score=91.48 Aligned_cols=225 Identities=17% Similarity=0.115 Sum_probs=141.7
Q ss_pred CCEEEEEEcCCceEEEEEcCC--CCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE
Q 004789 464 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 541 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~--~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l 541 (730)
+|+|..||..+|+.+...... .....+.....++.+++++.++.|+.||..+|+.+..+.. ...+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 589999999999999888642 1222222332333778888999999999999998877764 22222211 2234566
Q ss_pred EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC
Q 004789 542 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 620 (730)
Q Consensus 542 ~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~ 620 (730)
++++.++.++.+|..+++........ ..... ..........++..++++ .++.|..+|+++|+.+..+......
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE--SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeeccc-ccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 77778889999999998754431111 00000 111222233336677775 5899999999999998777653211
Q ss_pred --CC------eEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 621 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 621 --~~------v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.. +..-....++ .++.++.++.+..+|+.+++.+..... . .+. . ...+ .+..++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~-~~~--~-~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------S-GIY--S-LPSV-DGGTLYVTS 219 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------C-Ccc--C-Ccee-eCCEEEEEe
Confidence 11 1122222344 777777788644449999986642221 1 122 2 1234 567888887
Q ss_pred CCCcEEEEeCCCCceeee
Q 004789 693 TNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 693 ~Dg~I~iWd~~~~~~~w~ 710 (730)
.++.|..||+.+++.+|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999996
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.5e-07 Score=90.06 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=153.9
Q ss_pred CcEEEEee-CCEEEEEEcCCceE-EEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~-~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
..+||.|+ .|...+|...+.+. .+....|...|+-+.=.-+. .+..++.|.++++.++..+.......-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45788887 89999999986543 33333444444222211222 6778889999999988765433322211233889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 610 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~ 610 (730)
+++++|++++++.+....|..|.+......... +. ....+ +.-.+..|+.....+|+ ..||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~--~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY--EAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-eE--ecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999998763221111 11 11111 34568899998888888 5999999999987543
Q ss_pred eeee---cCCCCCCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 611 TSQL---VPDKMDLPITYATYSCDG--KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 611 ~~~~---~~~~h~~~v~~~~~spdg--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
.... ....|.+.+..+.|++.| .+|+..-.-+.+.+-|++++...+.+....-.-..|....|. ...|+. ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CC
Confidence 3221 123479999999999866 345555556889999999998776665432222223233355 666766 44
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004789 686 NRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~ 705 (730)
.-+.+.+.+ .+.-|++.++
T Consensus 315 ~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred cccccccch-hhheeecccc
Confidence 444444433 4556666554
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=6.6e-07 Score=107.77 Aligned_cols=257 Identities=9% Similarity=-0.019 Sum_probs=156.0
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE
Q 004789 385 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 461 (730)
Q Consensus 385 ~~v~fspd-g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s 461 (730)
..++++++ |+.+++-+.++.|++||.............. .....|.+.. .+-.....++++ ++.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-----~G~~dG~~~~-----a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-----EGLRDGSFED-----ATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-----cCCCCCchhc-----cccCCCcEEEEeCCCCEEEE
Confidence 46788875 5555565667889999875432210000000 0000111100 122335678887 666666
Q ss_pred ee--CCEEEEEEcCCceEEEEEcCC-----------------CCCeEEEEEcCC-C-eEEEEECCCcEEEEecCCCceEE
Q 004789 462 AS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 462 ~s--dg~I~vwd~~t~~~~~~~~~~-----------------~~~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
+. ++.|+++|..++.. .++.+. -..-..++++|+ + .+++.+.++.|++||..++...
T Consensus 641 aDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~- 718 (1057)
T PLN02919 641 ADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR- 718 (1057)
T ss_pred EeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-
Confidence 65 57899999887653 333210 112357999995 4 6666677889999998877543
Q ss_pred EEcCC---------------CCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCceecce---e-----ecccccCCC--
Q 004789 521 KLKGH---------------QNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSK---F-----LHSFQTGLV-- 574 (730)
Q Consensus 521 ~~~~h---------------~~~V~~l~~spd~~~l-~s~s~dg~I~vwd~~~~~~~~~~---~-----i~~~~~~h~-- 574 (730)
.+.+. -.....++++|++..| ++.+.++.|++||+.++...... . +..+ ....
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f-G~~dG~ 797 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKF-GDHDGV 797 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccc-cCCCCc
Confidence 22111 1235679999999855 45556789999999875321000 0 0000 0000
Q ss_pred ---CCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-----------CCCCCeEEEEEecCCCEEEEEE
Q 004789 575 ---PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 575 ---~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~spdg~~l~sgs 639 (730)
........++++++|..+++ ..++.|++||..++........+ ..-.....++++++|+++++-+
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 00013458999999987776 47889999999877654332111 0123567899999999888888
Q ss_pred cCCeEEEEECCCceE
Q 004789 640 KSGHVKVFDTSTLEL 654 (730)
Q Consensus 640 ~dg~I~iwd~~~~~~ 654 (730)
.++.|++||+.+++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999998865
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=5.1e-07 Score=98.27 Aligned_cols=286 Identities=9% Similarity=0.005 Sum_probs=171.7
Q ss_pred CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCe-eEEEEeCcEEEEee-CCEEEE
Q 004789 392 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISI 469 (730)
Q Consensus 392 dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V-~~l~~s~~~l~s~s-dg~I~v 469 (730)
.+..+++++.+|.+..+|..+++. +|......... .....+...+ ..+...+..++.++ +|.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~a 134 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSEKGQVYA 134 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCccc-ccccccccccccccEEECCEEEEEcCCCEEEE
Confidence 355688888889999999888875 66644322000 0000001111 12344455666666 899999
Q ss_pred EEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCe-----EEEEEeCCCCEEEEE
Q 004789 470 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 544 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~spd~~~l~s~ 544 (730)
+|.++|+.+.+.........+.... ++.++++..++.|..+|..+|+.+..+......+ .+.... +..++.+
T Consensus 135 ld~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~ 211 (394)
T PRK11138 135 LNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVG 211 (394)
T ss_pred EECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEE
Confidence 9999999988776443222222222 3467778889999999999999887775321110 111111 2356777
Q ss_pred eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec---CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCC
Q 004789 545 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 621 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp---dg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~ 621 (730)
+.+|.+..+|..+++......+......+.. .....+..+| ++..++++.+|.+..+|..+++.+-.....
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---- 285 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---- 285 (394)
T ss_pred cCCCEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----
Confidence 8899999999998765433222200000000 0011111122 444444468899999999999876554321
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
....+. .++..|+.++.+|.++.+|..+|+.+...... + ..... .... .+..++.++.||.|.+.|
T Consensus 286 ~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~--~~~~~--sp~v---~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 286 SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----L--HRLLT--APVL---YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-----C--CCccc--CCEE---ECCEEEEEeCCCEEEEEE
Confidence 111222 34667888889999999999999876543211 1 01111 1111 245778889999999999
Q ss_pred CCCCceeeeccC
Q 004789 702 PLESEVEWGKLP 713 (730)
Q Consensus 702 ~~~~~~~w~~~~ 713 (730)
..+|+..|...-
T Consensus 352 ~~tG~~~~~~~~ 363 (394)
T PRK11138 352 REDGRFVAQQKV 363 (394)
T ss_pred CCCCCEEEEEEc
Confidence 999999998743
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.5e-09 Score=109.73 Aligned_cols=281 Identities=15% Similarity=0.147 Sum_probs=175.2
Q ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-C
Q 004789 378 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 456 (730)
Q Consensus 378 ~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~ 456 (730)
.||+..|..++--.+.+-++++++|.+|++|.++..... ..+..+.-++. .|..+|.++.|- +
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~--------------~~tsaCQfTY~--aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE--------------IGTSACQFTYQ--AHKKPIHDIGFLAD 795 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc--------------cccceeeeEhh--hccCcccceeeeec
Confidence 579999999987777777999999999999998765431 11122222222 699999999999 5
Q ss_pred cEEEEeeCCEEEEEEcCCceEEEEEcC--CCCCeEEEEEcCC--C--eEEEEECCCcEEEEecCCCceEEEEc-----CC
Q 004789 457 SHLFSASGGKISIFSLETFQTLATFAN--PPPIATYFILLPQ--D--LFAFGFDDSSILVHCPCTKKTKAKLK-----GH 525 (730)
Q Consensus 457 ~~l~s~sdg~I~vwd~~t~~~~~~~~~--~~~~v~~i~~spd--g--~l~sgs~dg~I~iwd~~~~~~~~~~~-----~h 525 (730)
..-+..+||.|++||.--|+.+..+.. ..+.+..+..-++ . .++.++...+|+++|.+.++-...++ +.
T Consensus 796 lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 796 LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 545555589999999988877664431 1223333333343 3 44555788899999999987666664 34
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc-eeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEE-
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV- 602 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~-~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~i- 602 (730)
...+.+++..+.|++++++-..|.|.+.|.++|..... ++.. -....++ .|..+.++. ..|.++.+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-CchhHHHHhhcccceeEee
Confidence 46688999999999999999999999999999753221 1111 1122222 244455665 47888888
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE-----EEEeecccccCCCCcccceeeEE
Q 004789 603 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
|..-++....+..... .+..-+ -.-|.-|++....+.+.+|.-. ++. +..+.+..+ .+..+ +
T Consensus 945 Whaldgimh~q~kppp--epahfl--qsvgpSLV~a~~Gn~lgVYad~-a~~ha~stitKiR~d~f------~G~lT--a 1011 (1034)
T KOG4190|consen 945 WHALDGIMHLQDKPPP--EPAHFL--QSVGPSLVTAQNGNILGVYADS-AELHAESTITKIRPDEF------PGTLT--A 1011 (1034)
T ss_pred ehhcCCeeeeccCCCC--cchhhh--hccCceeEEeccCcEEEEEecc-hhhhhhhhhcccccccc------CCccc--e
Confidence 8766665544433221 111100 1124556666666666777421 111 112211111 22234 7
Q ss_pred EEEecCCCCEEEEEeCCCcEEE
Q 004789 678 IAAHPLEPNRIALGLTNGRVHV 699 (730)
Q Consensus 678 v~~sp~~~~~las~s~Dg~I~i 699 (730)
++--| -..-+..|...|.|++
T Consensus 1012 la~LP-LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1012 LAPLP-LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeecc-ccchhhccCCCCceee
Confidence 77777 4455667778888765
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=8.8e-09 Score=106.81 Aligned_cols=273 Identities=12% Similarity=0.150 Sum_probs=174.2
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCC---cceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEP---SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~---~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
....+.+.+++++.|++|++|.+....+. ..| ++++. .|+.+|.++.|-.+-+++++ .||.|.+||---++.
T Consensus 742 ~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC-QfTY~--aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~ 816 (1034)
T KOG4190|consen 742 AAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC-QFTYQ--AHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRL 816 (1034)
T ss_pred HhcccccceeeccCCceEEEEEeccccCcccccee-eeEhh--hccCcccceeeeeccceeee--ccCcceeecccccch
Confidence 34556778899999999999999754322 223 33443 39999999999999987665 588999999655543
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEe-e-CCEEEEEEcCCceEEEEEc-----CCCCC
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATFA-----NPPPI 487 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~-s-dg~I~vwd~~t~~~~~~~~-----~~~~~ 487 (730)
... ..|+++. +..+.|.|+.-- ...+..| + ..+|+++|.+.++....++ ++...
T Consensus 817 Laq--------~~dapk~----------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 817 LAQ--------MEDAPKE----------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred hHh--------hhcCccc----------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 221 2233321 223344444433 3344444 4 7899999999887766654 44567
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCceeccee
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKF 565 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~v-wd~~~~~~~~~~~ 565 (730)
+.+++..+.| ++++|-.+|.|.+.|.++|+.+..+.........++ .|..+.|+....|.++.+ |..-.+.. .
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim----h 953 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM----H 953 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee----e
Confidence 8999999999 999999999999999999999998876544444443 355567777777888888 87655321 1
Q ss_pred ecccccCCCCCCCCeEEEEEecCCcEEEEEe-cCcEEEEeCCC----CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPT----LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~-dg~I~iwd~~~----~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
++ ..... .+.. -...-|..+++.. .+.+.+|--.. ...+..++.....+..++++.-|-..-++.|.+
T Consensus 954 ~q-~kppp----epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne 1026 (1034)
T KOG4190|consen 954 LQ-DKPPP----EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE 1026 (1034)
T ss_pred ec-cCCCC----cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCC
Confidence 11 00000 0100 0111244555543 33455653211 111223333334667788887787777778888
Q ss_pred CCeEEE
Q 004789 641 SGHVKV 646 (730)
Q Consensus 641 dg~I~i 646 (730)
.|.|.+
T Consensus 1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred CCceee
Confidence 888865
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1e-07 Score=103.09 Aligned_cols=304 Identities=11% Similarity=0.096 Sum_probs=189.2
Q ss_pred cCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 375 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 375 l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
++|.-|...-.++.|+|.|- +|.|+.. .|.+-|..+-+. ++.. +.|...|+.+.|
T Consensus 9 lpG~l~~sN~~A~Dw~~~GL-iAygshs-lV~VVDs~s~q~---------------------iqsi--e~h~s~V~~VrW 63 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSGL-IAYGSHS-LVSVVDSRSLQL---------------------IQSI--ELHQSAVTSVRW 63 (1062)
T ss_pred CCCCCCcccccccccCccce-EEEecCc-eEEEEehhhhhh---------------------hhcc--ccCccceeEEEe
Confidence 33333566678899999994 5555544 566666544433 2211 158888999998
Q ss_pred e--------Cc------EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC---C--eEEEEECCCcEEEEecC
Q 004789 455 R--------GS------HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPC 514 (730)
Q Consensus 455 s--------~~------~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd---g--~l~sgs~dg~I~iwd~~ 514 (730)
. +. .||++. .|.|.+||...+..+..+..|..++..++|-+. . .|++-....+|.+|+..
T Consensus 64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 7 11 366666 799999999999999999999999999998653 2 56666677899999999
Q ss_pred CCceEEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCce--ecceeecccccCCCC----------------
Q 004789 515 TKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVP---------------- 575 (730)
Q Consensus 515 ~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~--~~~~~i~~~~~~h~~---------------- 575 (730)
+|+...++........|+.+.| |.+.+..-+..|.+.+-+.-.... ...+.++ +...|..
T Consensus 144 tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 144 TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred CCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccC
Confidence 9998887766556677788888 556666666667766665432110 1111222 2222110
Q ss_pred ---CCCC---eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC--CEEEEEEcCCeEEE
Q 004789 576 ---ETTI---VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG--KCIYVSCKSGHVKV 646 (730)
Q Consensus 576 ---~~~~---v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg--~~l~sgs~dg~I~i 646 (730)
+..- ...++|+|.-+.++. .....+.++|++-..++...... .+.+.-+.+-|++ ..|+++-.||.+.+
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 0000 113577887555544 67788999999877777776554 3444445555554 68999999999999
Q ss_pred EECCCceEEEEeec-ccccCCCCc------ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 647 FDTSTLELRCQINL-TAYAQPGTI------SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 647 wd~~~~~~~~~~~~-~~~~~~gh~------~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
|-.+.......... +-....|.. ...+.+...+-.|.+...++.--.+|.+.+|.+.++.
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 97654221111100 000000100 0112222344455445566655678889999998753
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=3.1e-07 Score=87.88 Aligned_cols=240 Identities=8% Similarity=-0.022 Sum_probs=152.5
Q ss_pred EEEec-----CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCee---EEEEeCcE
Q 004789 387 LIYSH-----SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS---CFALRGSH 458 (730)
Q Consensus 387 v~fsp-----dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~---~l~~s~~~ 458 (730)
+.|.| ...+||.||.-|...+|...+.+.... +-| .|...|. ..+-+.--
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~---------~cd-------------~snn~v~~~~r~cd~~~~ 130 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY---------QCD-------------VSNNDVTLVKRYCDLKFP 130 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCccccee---------eec-------------ccccchhhhhhhcccccc
Confidence 45555 234799999999999998876653111 111 1222221 11222222
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC--ceEE-EEcCCCCCeEEEE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKA-KLKGHQNRITCLA 533 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~--~~~~-~~~~h~~~V~~l~ 533 (730)
+..++ |.++++.+++-+..........-.+.++++++|+ ++++.+....|..|.+... ..++ .....++.-.+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 34444 8888888776544333332222337899999999 9999999999999987654 2233 2233445556788
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE--EEEE-ecCcEEEEeCCCCce
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH--LLSI-HEGQIDVYEAPTLNH 610 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~--l~~s-~dg~I~iwd~~~~~~ 610 (730)
|+.....+|+++.||++.|||++........ +......|. +.+..+.|++-|.. |+.+ .-+.+.+.|+++++.
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 9999999999999999999999873221111 111233355 89999999986543 3334 567899999999887
Q ss_pred eeeecCCC-----C-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 611 TSQLVPDK-----M-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 611 ~~~~~~~~-----h-~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
.+.+.... | ...+...+|+.++.-+.+.+++ .++=|++.+..
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 66554322 1 3457788888877777766554 34566665543
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=6.9e-08 Score=93.91 Aligned_cols=260 Identities=13% Similarity=0.126 Sum_probs=164.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc-ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
..+.|+++.|...|.||++|...|.|.++.-+.... ... ...-++....++-..... .-...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk------f~teFQshe~EFDYLkSl-eieEKin~I~w~~~t 97 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK------FFTEFQSHELEFDYLKSL-EIEEKINAIEWFDDT 97 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchh------hhhhhcccccchhhhhhc-cHHHHhhheeeecCC
Confidence 567899999999999999999999999987544321 000 000001000000000000 124567888887
Q ss_pred --CcEEEEeeCCEEEEEEcCCce-------------------EE-----------------------EEE-cCCCCCeEE
Q 004789 456 --GSHLFSASGGKISIFSLETFQ-------------------TL-----------------------ATF-ANPPPIATY 490 (730)
Q Consensus 456 --~~~l~s~sdg~I~vwd~~t~~-------------------~~-----------------------~~~-~~~~~~v~~ 490 (730)
..+|+++.|.+|++|.+.... ++ +.+ ..|...|++
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 446777779999999874320 00 111 356777889
Q ss_pred EEEcCCC-eEEEEECCCcEEEEecCCCc---eEEEEcCC-----CCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCce
Q 004789 491 FILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 491 i~~spdg-~l~sgs~dg~I~iwd~~~~~---~~~~~~~h-----~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
+.++.|. .++++ .|-.|.+|++.-.. .+..++.| ...|++..|+|. .+.+...+..|.|++-|++....
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9999888 66554 56789999976432 12233333 356888999995 35666677889999999984211
Q ss_pred e----cceeec------ccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC-ceeeeecCCC----------C
Q 004789 561 L----CSKFLH------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-NHTSQLVPDK----------M 619 (730)
Q Consensus 561 ~----~~~~i~------~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~-~~~~~~~~~~----------h 619 (730)
- ...... ..+.+-. ..|..+.|+++|+++++-.--+++|||++.. .++.++..+. .
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YE 333 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYE 333 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhh
Confidence 0 000000 0111112 5688899999999999877788999999754 4555553221 0
Q ss_pred CCCe---EEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 620 DLPI---TYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 620 ~~~v---~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
...| ..+.||-|.+.+++|+..+..-+|-..
T Consensus 334 nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 2222 457888899999999998888888643
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.6e-06 Score=90.83 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=171.4
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE
Q 004789 384 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 461 (730)
Q Consensus 384 V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s 461 (730)
-+-+.|||-|.||++--.-| |.+|--.+-.. ++.+ .| ..|.-+.|| .+||++
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------~~RF---~H-p~Vq~idfSP~EkYLVT 266 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------IQRF---YH-PGVQFIDFSPNEKYLVT 266 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------HHhc---cC-CCceeeecCCccceEEE
Confidence 45689999999999987765 67775332211 1111 13 457778888 788887
Q ss_pred ee------------CCEEEEEEcCCceEEEEEcCCCC--Ce-EEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCC
Q 004789 462 AS------------GGKISIFSLETFQTLATFANPPP--IA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 525 (730)
Q Consensus 462 ~s------------dg~I~vwd~~t~~~~~~~~~~~~--~v-~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h 525 (730)
-+ ...+.|||+.+|...+.+..... .+ .-+.||.|+ ++|.-.. .+|.||+..+..++..-.-.
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC
Confidence 43 14799999999999998876322 22 346899999 7766555 58999997764433222223
Q ss_pred CCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEec---
Q 004789 526 QNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--- 597 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~-----dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~d--- 597 (730)
-..|....|+|.++.||.=+. -..+.+-.+.++.......+. . -.=..+-|..+|.+|++--|
T Consensus 346 i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf------n---VsDckLhWQk~gdyLcvkvdR~t 416 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF------N---VSDCKLHWQKSGDYLCVKVDRHT 416 (698)
T ss_pred CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce------e---eeccEEEeccCCcEEEEEEEeec
Confidence 456888999999888875332 134556666654333222222 1 11224677888999987211
Q ss_pred -----C---cEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCc----eEEEEeecc
Q 004789 598 -----G---QIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL----ELRCQINLT 661 (730)
Q Consensus 598 -----g---~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~----~~~~~~~~~ 661 (730)
| .+.|+.++... ++..+. -...|...+|-|.|..+++-+.+ .++.+|.+.+. +++..+.
T Consensus 417 K~~~~g~f~n~eIfrireKdIpve~ve---lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-- 491 (698)
T KOG2314|consen 417 KSKVKGQFSNLEIFRIREKDIPVEVVE---LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-- 491 (698)
T ss_pred cccccceEeeEEEEEeeccCCCceeee---cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--
Confidence 1 25566665433 222232 26789999999999877655443 67888988741 2233332
Q ss_pred cccCCCCcccceeeEEEEEecCCCCEEEEEe---CCCcEEEEeCCC
Q 004789 662 AYAQPGTISLELYPLVIAAHPLEPNRIALGL---TNGRVHVIEPLE 704 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~sp~~~~~las~s---~Dg~I~iWd~~~ 704 (730)
. ..+..+.|+| .|++++.+. ..|.+.++|..-
T Consensus 492 --------k--~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 492 --------K--KFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred --------c--cccceEEEcC-CCcEEEEEEecccccceEEEecch
Confidence 1 2233899999 788877654 578899999985
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=3.9e-06 Score=99.35 Aligned_cols=271 Identities=11% Similarity=0.120 Sum_probs=169.8
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEe----ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLW----KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iW----d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s 455 (730)
..+.|.++.|-++...++.+..+|.|.+. +...... +++. .-...|.+++||
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-------------------E~VG-----~vd~GI~a~~WS 129 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-------------------EIVG-----SVDSGILAASWS 129 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-------------------EEEE-----EEcCcEEEEEEC
Confidence 45789999999999999999999999887 3222221 1221 246789999999
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCce--------------
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT-------------- 518 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~-------------- 518 (730)
++.|+..+ ++++.+.. .+...+....-+..... .+..++.|+.+.=.-+.-..|+.
T Consensus 130 PD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 130 PDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFG------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred CCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccC------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 77788777 78887775 45666555442221110 00233333222111111011111
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeC---C---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGA---D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~---d---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
...+. +.+.-..|+|..||.++|+.+. . +.++||+-.. . ++...+.-. +--.+++|.|.|.++
T Consensus 203 ~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~------L~stSE~v~---gLe~~l~WrPsG~lI 271 (928)
T PF04762_consen 203 EGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-E------LQSTSEPVD---GLEGALSWRPSGNLI 271 (928)
T ss_pred cCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-e------EEeccccCC---CccCCccCCCCCCEE
Confidence 01122 3445668999999999998764 2 5799999774 2 121111111 333479999999999
Q ss_pred EEEe----cCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE--EEEeeccccc
Q 004789 593 LSIH----EGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--RCQINLTAYA 664 (730)
Q Consensus 593 ~~s~----dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~ 664 (730)
|+.. ...|.+|.- +|-....|... .....|..+.|++|+..||....|. |.+|...+..- .+.+...
T Consensus 272 A~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--- 346 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--- 346 (928)
T ss_pred EEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc---
Confidence 9852 245788875 45444444432 3467899999999999999987666 99999887652 2333211
Q ss_pred CCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 665 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 665 ~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
. ...+. .+.|+|.+...|...+.+|.+..++..
T Consensus 347 --~--~~~~~--~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 347 --S--SESVN--FVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred --C--CCCCC--ceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 1 22234 599999878888888887888666554
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=4.4e-06 Score=84.14 Aligned_cols=219 Identities=18% Similarity=0.112 Sum_probs=147.5
Q ss_pred CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCe--EEEEEcCCC-eEEEEEC-----CCcEEEEecC-CCceEEEEcC
Q 004789 456 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKG 524 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v--~~i~~spdg-~l~sgs~-----dg~I~iwd~~-~~~~~~~~~~ 524 (730)
+..++.+- .....+||..+++....+....+.- -.-.||+|| +|++.-+ .|.|-|||.. +.+.+..+..
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 44455555 3467889999999888776544432 357899999 7777644 4689999999 5678888888
Q ss_pred CCCCeEEEEEeCCCCEEEEEe------------------CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 525 HQNRITCLAYSLSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s------------------~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
|.-....+.+.|||+.|+++. .+-.+...|..+++......+. ...|. .+|..+++.
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~ 171 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVD 171 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEec
Confidence 877778899999998887762 2334666777776654433332 12333 579999999
Q ss_pred cCCcEEEEE-ecC-------cEEEEeCCCCceeeeecCC-----CCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCc
Q 004789 587 PDQIHLLSI-HEG-------QIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTL 652 (730)
Q Consensus 587 pdg~~l~~s-~dg-------~I~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~ 652 (730)
++|..++.. ..| -+.+++. ++.+..+... .-.+.+-+|+++++|.++++.+- .|.+.+||..++
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 999887774 222 1455543 3333333221 12678999999999988866654 578999999999
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCc
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 696 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~ 696 (730)
+.+...... .+. .++-.+ ++ +++|.+. |.
T Consensus 250 ~~~~~~~l~----------D~c--Gva~~~-~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 250 RLLGSVPLP----------DAC--GVAPTD-DG-FLVSSGQ-GQ 278 (305)
T ss_pred CEeeccccC----------cee--eeeecC-Cc-eEEeCCC-cc
Confidence 988776531 233 666655 33 5665543 44
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=2e-05 Score=79.88 Aligned_cols=213 Identities=18% Similarity=0.099 Sum_probs=133.0
Q ss_pred EEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc-CCCeEEEEECCCcEEEEecCCCceEEEEcC-
Q 004789 451 CFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 524 (730)
Q Consensus 451 ~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s-pdg~l~sgs~dg~I~iwd~~~~~~~~~~~~- 524 (730)
+++|. +.++++-. .+.|+.|+..+++... +.... ...+++. +++.++++... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 45566 34444444 7999999998876644 22222 6677777 66655665654 456669998855433332
Q ss_pred ----CCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 525 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 525 ----h~~~V~~l~~spd~~~l~s~s~d--------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
.....+.+++.|+|+..++.... |.|..++.. ++. ..+. .+- .....++|+|+++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---~~~~---~~~----~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---TVVA---DGL----GFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---EEEE---EEE----SSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE---EEEe---cCc----ccccceEECCcchhe
Confidence 34568899999999977765543 457777776 221 1111 111 356799999999988
Q ss_pred EEE--ecCcEEEEeCCCCce----eeee-cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC
Q 004789 593 LSI--HEGQIDVYEAPTLNH----TSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 665 (730)
Q Consensus 593 ~~s--~dg~I~iwd~~~~~~----~~~~-~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 665 (730)
+++ ..+.|..|++..... ...+ ......+..-.+++..+|++.++....+.|.+++.. |+.+..+...
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 864 667899999853221 1222 111112347889999999988888889999999988 8888777642
Q ss_pred CCCcccceeeEEEEEecCCCCEEE
Q 004789 666 PGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 666 ~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
...+. +++|...+.+.|.
T Consensus 224 ----~~~~t--~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 224 ----VPRPT--NCAFGGPDGKTLY 241 (246)
T ss_dssp ----SSSEE--EEEEESTTSSEEE
T ss_pred ----CCCEE--EEEEECCCCCEEE
Confidence 12344 8899522444443
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.78 E-value=3.2e-06 Score=85.06 Aligned_cols=226 Identities=17% Similarity=0.121 Sum_probs=136.2
Q ss_pred CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE-eCcEEEEee-CCEEEEEEcCCceEEE
Q 004789 402 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL-RGSHLFSAS-GGKISIFSLETFQTLA 479 (730)
Q Consensus 402 dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~-s~~~l~s~s-dg~I~vwd~~t~~~~~ 479 (730)
+|+|..||..+++. +|...-+ .......+... .+..+++++ ++.|..||..+|+.+.
T Consensus 2 ~g~l~~~d~~tG~~------------~W~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 2 DGTLSALDPRTGKE------------LWSYDLG---------PGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW 60 (238)
T ss_dssp TSEEEEEETTTTEE------------EEEEECS---------SSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE
T ss_pred CCEEEEEECCCCCE------------EEEEECC---------CCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 57788888776664 5553211 00122222244 377777776 9999999999999998
Q ss_pred EEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEE-cCCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 004789 480 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ---NRITCLAYSLSLNVLVSSGADAQLCVWDA 555 (730)
Q Consensus 480 ~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~---~~V~~l~~spd~~~l~s~s~dg~I~vwd~ 555 (730)
.+.......... ...++.+++++.++.|+.+|..+|+.+... .... ..........++..++++..++.|..+|+
T Consensus 61 ~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 61 RFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp EEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred Eeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 887532211112 222336777778889999999999998874 3221 11122223334778888888999999999
Q ss_pred CCCceecceeecccccCCCC--CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 556 VGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~h~~--~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
++|+......+. ......+ ....+..-....++ .+++ +.++.+..+|+.+++.+.... ...+.. ....++
T Consensus 140 ~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~----~~~~~~-~~~~~~ 212 (238)
T PF13360_consen 140 KTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP----ISGIYS-LPSVDG 212 (238)
T ss_dssp TTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC----SS-ECE-CEECCC
T ss_pred CCCcEEEEeecC-CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec----CCCccC-CceeeC
Confidence 998765444332 1111000 00011222222345 4444 567754444999998654322 122222 145678
Q ss_pred CEEEEEEcCCeEEEEECCCceEEE
Q 004789 633 KCIYVSCKSGHVKVFDTSTLELRC 656 (730)
Q Consensus 633 ~~l~sgs~dg~I~iwd~~~~~~~~ 656 (730)
..|++++.++.|++||+.+|+.+.
T Consensus 213 ~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 213 GTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TEEEEEETTTEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEe
Confidence 888888899999999999998654
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=1.1e-05 Score=81.81 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=142.1
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEe
Q 004789 386 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 462 (730)
Q Consensus 386 ~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~ 462 (730)
+++|.+ +|.++++--..+.|..|+..++.. .++. ... ...+++. +..|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------~~~~--------------~~~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------EVID--------------LPG-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------EEEE--------------SSS-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------EEEe--------------cCC-CceEEEEccCCEEEEE
Confidence 577888 666555555678888887766543 1111 112 5566666 6666666
Q ss_pred eCCEEEEEEcCCceEEEEEcC-----CCCCeEEEEEcCCC-eEEEEECC--------CcEEEEecCCCceEEEEcCCCCC
Q 004789 463 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 463 sdg~I~vwd~~t~~~~~~~~~-----~~~~v~~i~~spdg-~l~sgs~d--------g~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
..+.+.++|..+++....... .....+.+++.|+| ..++.... |.|..++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 755556669998865544432 34567899999999 66655533 558888877 55444443 3456
Q ss_pred eEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCce--ecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 004789 529 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 604 (730)
Q Consensus 529 V~~l~~spd~~~l~-s~s~dg~I~vwd~~~~~~--~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd 604 (730)
.+.++|+|+++.|+ +-+..+.|..+++..... .....+...... . +..-.+++..+|+..++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-P---GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-S---CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-C---cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 78999999998776 556678899999864221 111122111111 1 246789999999877774 688999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEE
Q 004789 605 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 639 (730)
Q Consensus 605 ~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~sgs 639 (730)
.. |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 86 8888888764 4589999995 6767666544
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.77 E-value=1.3e-07 Score=91.96 Aligned_cols=252 Identities=15% Similarity=0.206 Sum_probs=159.7
Q ss_pred CCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 004789 445 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 501 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~-----~~~~~~~~~------------~~v~~i~~spdg---~l~s 501 (730)
....|+++.|. |.|+++|. .|.|.+|.-+... ....+++|. ..|..+.|..++ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45678999999 99999999 8999999765422 222344553 246788887666 7888
Q ss_pred EECCCcEEEEecCCCc------------------------------------------eEEEE-cCCCCCeEEEEEeCCC
Q 004789 502 GFDDSSILVHCPCTKK------------------------------------------TKAKL-KGHQNRITCLAYSLSL 538 (730)
Q Consensus 502 gs~dg~I~iwd~~~~~------------------------------------------~~~~~-~~h~~~V~~l~~spd~ 538 (730)
.+.|.+|++|.+.... +.+.+ ..|...|+++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999875320 00111 3467778899999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCceecceeecccccCCC--CCCCCeEEEEEecCCcE--EEEEecCcEEEEeCCCCcee---
Q 004789 539 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIH--LLSIHEGQIDVYEAPTLNHT--- 611 (730)
Q Consensus 539 ~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~--~~~~~v~~l~~spdg~~--l~~s~dg~I~iwd~~~~~~~--- 611 (730)
..++++ .|-.|.+|++.-... ...+-. .+.|. ..+.-|++..|+|..-. +++++.|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~--sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG--SFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred heeeec-cceeeeeccccccCC--ceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 888875 477899998865221 111110 11111 00135778899995433 33468999999999843211
Q ss_pred ---eeecCC--------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEeecccccCC----CCccccee-
Q 004789 612 ---SQLVPD--------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQP----GTISLELY- 674 (730)
Q Consensus 612 ---~~~~~~--------~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~----gh~~~~v~- 674 (730)
...... .-...|..+.|+++|+++++-+. -+|.|||++.. .++.++..+..... -.....|+
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 111110 11456788999999999988643 78999999865 45555543211100 00122232
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 675 PLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 675 ~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
...+.|+. +...+.+|+..+..-|+-.
T Consensus 340 kFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 340 KFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecC-Ccccccccccccceeeecc
Confidence 34678887 6778888887776666664
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=1.1e-07 Score=102.31 Aligned_cols=278 Identities=11% Similarity=0.084 Sum_probs=179.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCC--CEEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg--~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
.+.+|-|+-+|.++.-|-. +-|++..-.+..... +-..-.|-.+.|||.. .+-++......-.+|++.....
T Consensus 30 ~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-----h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-----HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred eeeccccchhhhhhhcCeE-EEeccCCCCCceeee-----ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 4678889999988886544 446654222212111 1123457778888754 3444444555566787654322
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce-EEEEEcCCCCCeEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY 490 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~-~~~~~~~~~~~v~~ 490 (730)
..+.. ...+|+.+|+.+.|. ...+++++ |-.+..||+++.. .+..+..-..+.+.
T Consensus 104 -------------------~aIef-~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq 163 (1081)
T KOG0309|consen 104 -------------------NAIEF-VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ 163 (1081)
T ss_pred -------------------cceEE-EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence 01111 111799999999999 67899999 9999999998753 45555555556678
Q ss_pred EEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 491 FILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 491 i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
++|+-.. .+.+.+..+.|++||.+.| .++..+++|...|+.++|..- ...+.+.+.||+|+.||...........+
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v- 242 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV- 242 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-
Confidence 9998777 6666677789999999876 678889999999999998652 24577889999999999876332111111
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEe---------CCC-CceeeeecCCCCCCCeEEEEEecC---
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYE---------APT-LNHTSQLVPDKMDLPITYATYSCD--- 631 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~--s-~dg~I~iwd---------~~~-~~~~~~~~~~~h~~~v~~~~~spd--- 631 (730)
... .+|..-.+.|-|.-... . .++.+.+++ ..+ .+++++|. +|...|....|-..
T Consensus 243 --tt~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 243 --TTN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKEC 313 (1081)
T ss_pred --ccc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec--CcchHHHHHhhhhcccc
Confidence 111 45666677774433332 2 223343333 322 34566775 46777766655421
Q ss_pred -C------CEEEEEEcCCeEEEEECCC
Q 004789 632 -G------KCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 632 -g------~~l~sgs~dg~I~iwd~~~ 651 (730)
| -.|++-+.|..+++|-+.+
T Consensus 314 ~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEeecCCceEeeeccH
Confidence 1 2589999999999998864
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=1.2e-07 Score=95.83 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=110.0
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE----EecCcEEEE
Q 004789 528 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS----IHEGQIDVY 603 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~----s~dg~I~iw 603 (730)
.+..+..++.++++|++..+....+++...... ..+.+....-. ..-+++.|..+...+.+ |....+.+|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~-----~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP-----KRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc-----cCcceeeeeeccceEEEEeecCCceeeeee
Confidence 344566788889999888888877887766332 11222211111 12345555555444443 244557777
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 683 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 683 (730)
....+.+...+ +|-..++.++|+||+++|+++..|..|+|-.......+..+.. || ..-|. .++.-+
T Consensus 138 s~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH-~eFVS--~isl~~- 204 (390)
T KOG3914|consen 138 SADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GH-KEFVS--TISLTD- 204 (390)
T ss_pred cccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------cc-Hhhee--eeeecc-
Confidence 76655554333 6799999999999999999999999999988776555555442 77 55677 555544
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 684 EPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 684 ~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
+..|+|||.|++|++||+.+|++.
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -CceeeecCCCCcEEEEecccCCcc
Confidence 567899999999999999999764
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1e-05 Score=88.01 Aligned_cols=193 Identities=12% Similarity=0.072 Sum_probs=118.6
Q ss_pred CcEEEEEEecCCCE-EEEEeCC---CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 382 GRVVRLIYSHSGDF-LVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 382 ~~V~~v~fspdg~~-L~s~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
+.+....|||||+. ++..+.+ ..|.++|+.+++. .... ...+.+....|+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------------~~lt---~~~g~~~~~~~SPD 243 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------------EKIA---SSQGMLVVSDVSKD 243 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------------EEEe---cCCCcEEeeEECCC
Confidence 47788999999985 5554443 4566666655432 1111 133445567788
Q ss_pred CcEEEEee----CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-CC--cEEEEecCCCceEEEEcCCCC
Q 004789 456 GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 456 ~~~l~s~s----dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~ 527 (730)
|+.++... +..|.++|+.++... .+..+........|+||| .|+..+. .+ .|+++|+.+++..+.... ..
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 66655443 357999999887643 444444334467899999 5555543 33 688889988776443321 11
Q ss_pred CeEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-e
Q 004789 528 RITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-H 596 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~d---------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~ 596 (730)
. ...|+|||+.|+..+.. ..|.+.|+.++.. ..+. .+ +......|+|||+.++. . .
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT---~~-----~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLT---AN-----GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECC---CC-----CCcCCeEECCCCCEEEEEEcc
Confidence 1 24899999998876643 3688889887542 2222 21 12235889999999887 3 2
Q ss_pred c--CcEEEEeCCCCceeeee
Q 004789 597 E--GQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 597 d--g~I~iwd~~~~~~~~~~ 614 (730)
. ..+.++++. +.....+
T Consensus 389 ~~~~~L~~~~l~-g~~~~~l 407 (419)
T PRK04043 389 GNQSALGIIRLN-YNKSFLF 407 (419)
T ss_pred CCcEEEEEEecC-CCeeEEe
Confidence 2 237778874 4333334
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=1.5e-05 Score=80.39 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=147.1
Q ss_pred EEEEEEec-CCCEEEEEeCCCc-EEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 384 VVRLIYSH-SGDFLVALTQTAT-HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 384 V~~v~fsp-dg~~L~s~s~dg~-I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
...++.+| .+..++.+-.-|+ ..+||..+++.... ++- ..+.-.. +| -+|+ |++|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~---------~~a-~~gRHFy-----GH------g~fs~dG~~L 65 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR---------LWA-PPGRHFY-----GH------GVFSPDGRLL 65 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE---------EcC-CCCCEEe-----cC------EEEcCCCCEE
Confidence 34578888 4555666666654 46777766654211 111 1111110 33 4677 8888
Q ss_pred EEee------CCEEEEEEcC-CceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC------------------CCcEEEEec
Q 004789 460 FSAS------GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFD------------------DSSILVHCP 513 (730)
Q Consensus 460 ~s~s------dg~I~vwd~~-t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~------------------dg~I~iwd~ 513 (730)
++.- .|.|-|||.. +.+.+..+..|.-.-..+.+.||| .|+++.. +.++...|.
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 8764 3789999998 778888998887777889999999 6666531 235777888
Q ss_pred CCCceEEEEc----CCCCCeEEEEEeCCCCEEEEEeCCCc-------EEEEEcCCCceecceeec-ccccCCCCCCCCeE
Q 004789 514 CTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVN 581 (730)
Q Consensus 514 ~~~~~~~~~~----~h~~~V~~l~~spd~~~l~s~s~dg~-------I~vwd~~~~~~~~~~~i~-~~~~~h~~~~~~v~ 581 (730)
.+|+.+.+.. .|...|..+++.++|..++..-..|. +-+++.... ....... .....-. +.+-
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~---~Y~g 220 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLN---GYIG 220 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhC---CceE
Confidence 8998887743 37788999999999876655433322 344443331 0000000 0011111 5788
Q ss_pred EEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 582 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 582 ~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
+|++++++..+++ + ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.+
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-CccE
Confidence 9999999998887 5 77899999999999887664 4456667766666 555544 4543
No 300
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.4e-06 Score=94.66 Aligned_cols=243 Identities=12% Similarity=0.083 Sum_probs=173.0
Q ss_pred CCCCeeEEEEe-CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC-----------C--eEEEEECCCcEEE
Q 004789 445 PKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ-----------D--LFAFGFDDSSILV 510 (730)
Q Consensus 445 h~~~V~~l~~s-~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd-----------g--~l~sgs~dg~I~i 510 (730)
|...-.++.|+ +..||.|+...|.+.|..+.+.++.+..|...|+.+.|.|- . .||++...|.|.+
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 33446678899 99999999999999999999999999999999999999762 2 6788888999999
Q ss_pred EecCCCceEEEEcCCCCCeEEEEEeC---CC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 511 HCPCTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 511 wd~~~~~~~~~~~~h~~~V~~l~~sp---d~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
||...+..+..+..|..++..+.|-+ +. ..|++-....++.+|+..+|+... + ...+|. ...|+.+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W----k-~~ys~~----iLs~f~~D 164 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW----K-YDYSHE----ILSCFRVD 164 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee----c-cccCCc----ceeeeeeC
Confidence 99999999999998999999999966 33 456666777899999999976422 2 233343 56678888
Q ss_pred c-CCcEEEE-EecCcEEEEeCCC-------CceeeeecCC--------------CCCC---------CeEEEEEecCCCE
Q 004789 587 P-DQIHLLS-IHEGQIDVYEAPT-------LNHTSQLVPD--------------KMDL---------PITYATYSCDGKC 634 (730)
Q Consensus 587 p-dg~~l~~-s~dg~I~iwd~~~-------~~~~~~~~~~--------------~h~~---------~v~~~~~spdg~~ 634 (730)
| |.+.+.. +..|.+.+-+.-. ++..+.-..+ .+.. ....++|+|.-+.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 8 6666666 6777766665421 2222211110 0000 0123567777666
Q ss_pred EEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCc
Q 004789 635 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 635 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~-~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
++...-...+.|+|++-...+.++... .+.+. -+.|-|+ ....|.+.-.||.+.||--....
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpie--------r~~ak--fv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIE--------RGGAK--FVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEec--------cCCcc--eeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 666667888999999988777766532 22244 3455551 23468889999999999887643
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=8.6e-06 Score=79.58 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=131.1
Q ss_pred EEEcCCCeEEEEECCCcEEEEecCCC--ceEEEEcC---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee
Q 004789 491 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 491 i~~spdg~l~sgs~dg~I~iwd~~~~--~~~~~~~~---h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 565 (730)
++.+.+|.+++.-.|..|-|-..++. .++.+.+- ..-.=+.++|+||+..||.+...|+|++||+.....-...+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 55667774444456777777655543 23233222 22234679999999999999999999999998733211111
Q ss_pred ecccccCCCCCCCCeEEEEEecCC-------cEEEEEecCcEEEEeCCC-----CceeeeecCC-CCCCCeEEEEEecCC
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPD-KMDLPITYATYSCDG 632 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg-------~~l~~s~dg~I~iwd~~~-----~~~~~~~~~~-~h~~~v~~~~~spdg 632 (730)
-......- ...|..+.|.+.. ..|+...+|.++-|-+.. .+....+... .+...|.+++++|.-
T Consensus 83 ~~~~~~d~---~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGDL---SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCcc---ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 00001111 1456677776532 344457888877666532 2233333322 237789999999998
Q ss_pred CEEEEEEcC-----------CeEEEEECCCceEEEEee---------------------cccccCCCCcccceeeEEEEE
Q 004789 633 KCIYVSCKS-----------GHVKVFDTSTLELRCQIN---------------------LTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 633 ~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~---------------------~~~~~~~gh~~~~v~~~~v~~ 680 (730)
++|++|+.. .-+..|.+-++.+-.... ...+...+.....|. .|..
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl 237 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL 237 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE
Confidence 888877642 135677765443322111 000111122344566 8999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCc--eeeecc
Q 004789 681 HPLEPNRIALGLTNGRVHVIEPLESE--VEWGKL 712 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd~~~~~--~~w~~~ 712 (730)
|| |+..||+...+|.|.+|++.+-. .+|...
T Consensus 238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 99 89999999999999999998765 457653
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=2.7e-07 Score=93.35 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=103.4
Q ss_pred CcEEEEee-CCEEEEEEcCCce----EEEEEcCCCCCeEEEEEcCCC-eEEEE---ECCCcEEEEecCCCceEEEEcCCC
Q 004789 456 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFG---FDDSSILVHCPCTKKTKAKLKGHQ 526 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~----~~~~~~~~~~~v~~i~~spdg-~l~sg---s~dg~I~iwd~~~~~~~~~~~~h~ 526 (730)
++++|++. +....+++..... +...... ...-+++.+..+. ....+ +....+.+|....+.+ ..+-||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhh
Confidence 66777777 5665566654322 2222221 2222344444444 33333 3444566666655544 3445799
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 004789 527 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 605 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~ 605 (730)
..+++++|+||+++++++..|..|++-.... ...+..+..||+ ..|..++.-++.. |++ |.|+++++||+
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence 9999999999999999999999999987766 356676788898 7999999987654 666 69999999999
Q ss_pred CCCceeeeec
Q 004789 606 PTLNHTSQLV 615 (730)
Q Consensus 606 ~~~~~~~~~~ 615 (730)
.+|+.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999887664
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.64 E-value=2.2e-05 Score=76.84 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=128.1
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
.+.||+.||.- .|..|.|=...+.-.+ ...+...+.. -.-.=..++||||+..||.+.+.|+|+++|+.....
T Consensus 5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~s-i~~kcqVpkD-~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---- 77 (282)
T PF15492_consen 5 LSSDGKLLAIL-QDQCIEIRSAKDDFSS-IIGKCQVPKD-PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---- 77 (282)
T ss_pred ecCCCcEEEEE-eccEEEEEeccCCchh-eeEEEecCCC-CCchheEEEECCCCcEEEEEcCCCeEEEEeccccee----
Confidence 46789988865 4466666554431111 1112222221 222346799999999999999999999999876543
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---------CcEEEEeeCCEEEEEEcC-----CceEEEEEc---
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---------GSHLFSASGGKISIFSLE-----TFQTLATFA--- 482 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---------~~~l~s~sdg~I~vwd~~-----t~~~~~~~~--- 482 (730)
+....... ..+.-..+|..+.|. -++|+..-+|.++-|-+. ..+...++.
T Consensus 78 ---------f~I~p~~~----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 78 ---------FVIPPAMS----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred ---------EEcCcccc----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 21111110 001234566666665 234444448877766653 233444443
Q ss_pred CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE--EEEEeCCC------cEEEE
Q 004789 483 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV--LVSSGADA------QLCVW 553 (730)
Q Consensus 483 ~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~--l~s~s~dg------~I~vw 553 (730)
.+...|+++.++|.. .|++|+.... +++. -+.....+++-..-.+..+ .++...|+ +-.+|
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 347799999999998 6666553321 0000 0001111111111111100 11111111 11233
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~ 616 (730)
.+-+ ..+........ ..|..|..||||+.|++ ..+|.|.+|++.+.++.+.+..
T Consensus 215 ~~~~------~~~fs~~~~~~---d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 215 RIPS------FKFFSRQGQEQ---DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred eccc------eeeeeccccCC---CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 3322 11110011111 68999999999999999 5899999999998888777754
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=7.5e-08 Score=95.14 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=120.7
Q ss_pred EEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccc
Q 004789 492 ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 569 (730)
Q Consensus 492 ~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~ 569 (730)
+|+-+- +-++.+.+..|-+-|+.+|.. +.|. ..+.|.++.|...++.+..|+..|.|..+|++.+.+....+.+.+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 565332 225566677889999988754 3343 567799999999899999999999999999998644333344322
Q ss_pred ccCCCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 570 QTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
-|. ..|+++..-. ++++|++ +.+|.|.+||.+.-++ ++++.++.....-.-+-..+....+++++.|...
T Consensus 296 --yh~---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 --YHD---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred --EcC---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 233 6788887766 6777777 5899999999987776 7788654333333444455777889999999999
Q ss_pred EEEECCCceEEEEeecc
Q 004789 645 KVFDTSTLELRCQINLT 661 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~ 661 (730)
+||.++.|.++.++...
T Consensus 371 RiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEecccCceeeccCCC
Confidence 99999999999887643
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=4.9e-05 Score=72.92 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=97.5
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIF 470 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vw 470 (730)
..+++.||..+.+.--|.+++.. +|... -..+|.+-+.- |++++.|+ .|.+++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFL 78 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEE
Confidence 34667777778777777666654 45532 33555565555 99999999 9999999
Q ss_pred EcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCc
Q 004789 471 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 549 (730)
Q Consensus 471 d~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~ 549 (730)
+.++|.....+..-..--......+++ .+..|+.|++.+..|.++..++.+.+...+...+-+..|-...|..+...|.
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 999998887776433322345567788 9999999999999999999988887654444445566663334555555565
Q ss_pred EEEEEcCC
Q 004789 550 LCVWDAVG 557 (730)
Q Consensus 550 I~vwd~~~ 557 (730)
+.--..+.
T Consensus 159 vlavt~~~ 166 (354)
T KOG4649|consen 159 VLAVTKNP 166 (354)
T ss_pred EEEEccCC
Confidence 54444443
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=3.6e-07 Score=87.09 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=121.3
Q ss_pred eEEEEEcCCCeEEEEECCCcEEEEecCCCceE------------EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 004789 488 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 555 (730)
Q Consensus 488 v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~------------~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~ 555 (730)
++.+.++.+..|+++..++.+.......+.+. +.+..|+++-.+-+.+--++-++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 45555554446777777766665554433322 233333333333333444677999999999999998
Q ss_pred CCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEe
Q 004789 556 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 629 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 629 (730)
+.-.... .. +...|. .-.+.+....+..+.++ .-+..++|+++..+.+..-. .....|.+++-+
T Consensus 119 ~~~~~~~-~~---i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~h 188 (319)
T KOG4714|consen 119 DKDLALM-SR---IPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCSH 188 (319)
T ss_pred hHHHhhh-hh---cccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhCC
Confidence 7621111 11 111121 12233444456666653 23456777765433322111 113448888888
Q ss_pred cCC-CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 630 CDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 630 pdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
|.. ..+++|+.||.+-+||.+.......+- ..| ..+++ .|-|||.++..|.+++.||.+.-||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l------~ah-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL------KAH-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH------HHh-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 854 577789999999999998874332221 133 66799 9999999999999999999999999874
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=5.6e-07 Score=85.83 Aligned_cols=204 Identities=13% Similarity=0.113 Sum_probs=117.2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE
Q 004789 384 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 461 (730)
Q Consensus 384 V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s 461 (730)
|..+.|+.+-. |+++..++.+......+..+. ..|+-..+.-....+. .|.++-.+-+.+ ++.+++
T Consensus 39 ~~~~~~v~~~~-lf~~e~~~~~ss~g~~r~~~~----------~~~~rt~~i~~~~~~a-~~sep~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 39 LSKVSLSAEYI-LFTGETSSQIISLGKGRGRCI----------SLWERDDGIDPFKVLA-KNSEIDPNDACTMTDNRVCI 106 (319)
T ss_pred EEEeechhhhe-eecccchhheeeeccceEEEe----------chhhcccCcCceeeee-ccCCCCCcccccccCCceEe
Confidence 56666666554 677777777766654443331 2233222211111111 243333333334 888999
Q ss_pred ee-CCEEEEEEcCCce-EEEEEcCCCCCeEEEEEcCCC-eEEEEE-----CCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 462 AS-GGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGF-----DDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 462 ~s-dg~I~vwd~~t~~-~~~~~~~~~~~v~~i~~spdg-~l~sgs-----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
+. ||.+.+.+.+.-. ....+......-.+.+....+ .+.++. .-+..+.|+++..+.+..-......|++++
T Consensus 107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~ 186 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC 186 (319)
T ss_pred cCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhh
Confidence 99 9999999976521 111111111111222333333 333322 122456666554332221111234489999
Q ss_pred EeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCC
Q 004789 534 YSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPT 607 (730)
Q Consensus 534 ~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~iwd~~~ 607 (730)
-+|.. ..+++|+.||.+.+||.+.. ..+.. ....|+ .+++.+-|+| ++..|++ +.||.+.-||..+
T Consensus 187 ~hp~qq~~v~cgt~dg~~~l~d~rn~----~~p~S-~l~ahk---~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 187 SHPAQQHLVCCGTDDGIVGLWDARNV----AMPVS-LLKAHK---AEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCcccccEEEEecCCCeEEEEEcccc----cchHH-HHHHhh---hhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99965 45677888999999999984 24444 667787 7999999999 5677777 6999999999854
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.56 E-value=6.1e-05 Score=76.87 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=160.7
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC----------CCcEEEeecCCCcccccccccc
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 423 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~----------dg~I~iWd~~~~~~~~~~~~~~ 423 (730)
+.+.+.|.+. ++..-.. ..+-.-.+..||+|+.+++++. ...|.+||.++-....+
T Consensus 17 ~rv~viD~d~----~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E----- 82 (342)
T PF06433_consen 17 SRVYVIDADS----GKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE----- 82 (342)
T ss_dssp EEEEEEETTT----TEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-----
T ss_pred ceEEEEECCC----CcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-----
Confidence 4577777653 2222111 2333445778999998887653 34677777766543211
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 497 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg- 497 (730)
+-=+...... .......++++ |++++... ...|.|.|+..++.+..+.... |...-|.+
T Consensus 83 ----I~iP~k~R~~-------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~ 147 (342)
T PF06433_consen 83 ----IEIPPKPRAQ-------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGN 147 (342)
T ss_dssp ----EEETTS-B---------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEET
T ss_pred ----EecCCcchhe-------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCC
Confidence 0000000000 01122345666 78877766 5789999999999988886443 33333444
Q ss_pred -eEEEEECCCcEEEEecC-CCceEEEE----cCCCCCe-EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 498 -LFAFGFDDSSILVHCPC-TKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 498 -~l~sgs~dg~I~iwd~~-~~~~~~~~----~~h~~~V-~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
.|.+-+.||.+.-..+. .|+...+- .....++ ..-++...+..++..+.+|.|+-.|+.........+.....
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 67788889999888887 45544222 1112222 23345556666666788999999999876543333332100
Q ss_pred -----cCCCCCCCCeEEEEEecCCcEEEE----EecC-------cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC-
Q 004789 571 -----TGLVPETTIVNHIQFHPDQIHLLS----IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK- 633 (730)
Q Consensus 571 -----~~h~~~~~~v~~l~~spdg~~l~~----s~dg-------~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~- 633 (730)
.+-.| +.-.-+++++....|++ +.++ .|.+||+.+++.+.++.. ..++.++..+.+.+
T Consensus 228 ~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 228 DAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKP 302 (342)
T ss_dssp HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-
T ss_pred ccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCc
Confidence 01112 34456889886666555 2222 399999999999999875 45688999998775
Q ss_pred EEEEEE-cCCeEEEEECCCceEEEEeec
Q 004789 634 CIYVSC-KSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 634 ~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 660 (730)
+|++.+ .++.+.+||..+|+.+..+..
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 665544 579999999999999988763
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=6.6e-08 Score=105.70 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=138.3
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCC-cEEEEecCC-C
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-K 516 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg-~I~iwd~~~-~ 516 (730)
.|....+|++|+ .++|+.|+ .|.|+++++.+|.......+|..+|+.+.-+.|| .|.+++... -..+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 477889999999 77899999 9999999999999999999999999999999999 444444444 578899764 3
Q ss_pred ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe
Q 004789 517 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 596 (730)
Q Consensus 517 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~ 596 (730)
...+++.+ -.++.|+.....-+.|+......+||+.++. ++.+.+.+-......-++..|+|+.+.++-
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 44455542 3467787655444556666778999999954 333222221111123357889998877763
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
|| .+||++..+.++.|.. -..-..-.|+|+|.-++..++ |||+++-+++...
T Consensus 1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 33 4899988877776642 122234468999999988774 8999998766554
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=1.6e-06 Score=95.86 Aligned_cols=179 Identities=19% Similarity=0.242 Sum_probs=131.6
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
+..++.|+ ...+..+|+++.+..+...-..+.|.-+. .++ .+++|...|+|.+-|.++.+.++++..|++.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 55677777 78888999999888877765555554444 355 899999999999999999999999999999998865
Q ss_pred EeCCCCEEEEEeC---------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC--CcEEEEEecCcEEE
Q 004789 534 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDV 602 (730)
Q Consensus 534 ~spd~~~l~s~s~---------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd--g~~l~~s~dg~I~i 602 (730)
. .|+.|++++. |.-|+|||++.-+. ..+++ +..+ -.-+.|+|. .+..+++..|...+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~-~~~~-------P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQ-FPYG-------PQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhc--cCCcc-cccC-------chhhhhcccccceEEEEecccceee
Confidence 5 5889998875 55689999998432 23333 2222 245778884 33334478899999
Q ss_pred EeCCCC-c-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 603 YEAPTL-N-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 603 wd~~~~-~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
.|..+. . ....+........+..+++|++|+.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 983321 1 122222223356699999999999999999999999997
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=7.1e-05 Score=83.59 Aligned_cols=290 Identities=13% Similarity=0.087 Sum_probs=167.4
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCe--eEEEEeC-cEEEEee-CCEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKIS 468 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V--~~l~~s~-~~l~s~s-dg~I~ 468 (730)
+..++.++.++.+.-.|..+++. +|....+.... .....+ ..++..+ ..++.++ +|.|.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEE
Confidence 34577788889999999888875 56543322100 000111 1223334 7777777 99999
Q ss_pred EEEcCCceEEEEEcCCCCC-----e-EEEEEcCCCeEEEEE---------CCCcEEEEecCCCceEEEEcCCCC------
Q 004789 469 IFSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------ 527 (730)
Q Consensus 469 vwd~~t~~~~~~~~~~~~~-----v-~~i~~spdg~l~sgs---------~dg~I~iwd~~~~~~~~~~~~h~~------ 527 (730)
-+|.++|+.+..+...... + .+..+. ++.++.++ .++.|..+|..+|+.+-.+.....
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~ 202 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP 202 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence 9999999999887644321 1 122222 23444554 367899999999998877653211
Q ss_pred --------------Ce-EEEEEeCCCCEEEEEeCCC------------------cEEEEEcCCCceecceeeccc----c
Q 004789 528 --------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSF----Q 570 (730)
Q Consensus 528 --------------~V-~~l~~spd~~~l~s~s~dg------------------~I~vwd~~~~~~~~~~~i~~~----~ 570 (730)
.| .+.++.+.+..++.++.++ .|.-+|..+++..-....... .
T Consensus 203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 203 TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 01 1244555566778787665 688999999876543322100 0
Q ss_pred cCCCCCCCCeEEEEEecCCc---EEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE--------
Q 004789 571 TGLVPETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-------- 638 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~---~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sg-------- 638 (730)
.+..+ ..+..+. .-+|. .++++ .+|.++..|.++|+.+-..... ...++.+| ..++.+
T Consensus 283 ~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence 01100 0011111 01333 34444 7899999999999988765421 11223333 333332
Q ss_pred ----------EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 639 ----------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 639 ----------s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
..+|.|.-.|+.+|+.+-..........-..........++. .+..++.++.||.|+.+|..+|+..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCcee
Confidence 236889999999998877665320000000000111001121 4578888889999999999999999
Q ss_pred eeccC
Q 004789 709 WGKLP 713 (730)
Q Consensus 709 w~~~~ 713 (730)
|...-
T Consensus 430 W~~~~ 434 (488)
T cd00216 430 WKFRT 434 (488)
T ss_pred eEEEC
Confidence 99754
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-06 Score=89.35 Aligned_cols=253 Identities=18% Similarity=0.080 Sum_probs=173.2
Q ss_pred CCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCC---ceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEecCCC
Q 004789 444 DPKDSISCFALR-GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTK 516 (730)
Q Consensus 444 ~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t---~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-dg~I~iwd~~~~ 516 (730)
-|...|+.+... .+++.+++ ||.++.|.-.. -+.+..+..|...|.+++.+-+| .+.+++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 388889888888 99999999 99999998643 23445566788889999999999 8888777 999999999877
Q ss_pred ceEEEEcC--CCCCeEEEEEeCCC-C-EEE-EEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE
Q 004789 517 KTKAKLKG--HQNRITCLAYSLSL-N-VLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 517 ~~~~~~~~--h~~~V~~l~~spd~-~-~l~-s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
..+..++. -.+.+..+ .++.. . .++ +.-.++.|.++|-..... .... ...-|. .+|..+.+.+.+..
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~---q~~~-fkklH~---sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC---QDGY-FKKLHF---SPVKKIRYNQAGDS 158 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC---ccce-eccccc---CceEEEEeeccccc
Confidence 65544332 22323222 23321 1 233 334578999999877432 1111 334455 79999999999998
Q ss_pred EEEE-ecCcEEEEeCCC------Cceeeeec-------CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEE
Q 004789 592 LLSI-HEGQIDVYEAPT------LNHTSQLV-------PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 657 (730)
Q Consensus 592 l~~s-~dg~I~iwd~~~------~~~~~~~~-------~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 657 (730)
+++. ..|.|.-|.... .+....+. .........++.|+|+|..+.+-+.|..|++++..+|++++.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 8885 678999998762 11111111 012356778999999999999999999999999999988776
Q ss_pred eeccc----ccCC---C-----------------CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 658 INLTA----YAQP---G-----------------TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 658 ~~~~~----~~~~---g-----------------h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
+.-.. +.+. | .++. .....+.|.. .+++|+-|+-= .|++.++.++..
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~-~~~~~~~fde-s~~flly~t~~-gikvin~~tn~v 309 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS-TVGTNAVFDE-SGNFLLYGTIL-GIKVINLDTNTV 309 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcC-cccceeEEcC-CCCEEEeecce-eEEEEEeecCeE
Confidence 64211 0000 0 0111 1123567777 68888888754 488999888764
No 313
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.51 E-value=2.9e-07 Score=84.85 Aligned_cols=132 Identities=21% Similarity=0.224 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHH
Q 004789 46 VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125 (730)
Q Consensus 46 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ 125 (730)
...++++|++|+++.|+..+....+--.... ..+.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRN-SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6789999999999999999976642211112 228999999999999999999999999999998774446778888888
Q ss_pred Hhccccccc--cccccCCCCChhhHHHHHHHHHHhhhccccccccccCCCCchhHHHHHHHhhC
Q 004789 126 LLALKDLRE--NEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLIC 187 (730)
Q Consensus 126 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~~~~rL~~ll~q~~ 187 (730)
+|..++..+ ...+...-+. ..|..+++.+.+.+-..- ..| +.+.|..++++.+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~------~~~--~~s~L~~~~~~g~ 138 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSY------GLP--KESPLEVILKAGL 138 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHh------CcC--CCCHHHHHHHHHH
Confidence 888876443 2223322333 779999999988776622 222 2457888888733
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.43 E-value=0.00043 Score=77.35 Aligned_cols=282 Identities=13% Similarity=0.086 Sum_probs=157.7
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCC--CCCCcEE--EEEEecCCCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--SFGGRVV--RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~--gh~~~V~--~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
+..+..++.++.+.-.|... ....-+...... .+...+. .++.. ++..++.++.++.|..+|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t---G~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~---- 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT---GKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ---- 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC---ChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE----
Confidence 44566677778888777753 222223221110 0000010 01111 225688888999999999988875
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCe-eEEEEeCcEEEEe---------e-CCEEEEEEcCCceEEEEEcCCCC--
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSA---------S-GGKISIFSLETFQTLATFANPPP-- 486 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V-~~l~~s~~~l~s~---------s-dg~I~vwd~~t~~~~~~~~~~~~-- 486 (730)
+|......... ....+ ....+.+..++.+ + +|.+..+|..+|+.+..+.....
T Consensus 133 --------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 133 --------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred --------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 56543221100 00001 0112223333333 2 57899999999998887754211
Q ss_pred ------------------Ce-EEEEEcCCC-eEEEEECCC------------------cEEEEecCCCceEEEEcC--CC
Q 004789 487 ------------------IA-TYFILLPQD-LFAFGFDDS------------------SILVHCPCTKKTKAKLKG--HQ 526 (730)
Q Consensus 487 ------------------~v-~~i~~spdg-~l~sgs~dg------------------~I~iwd~~~~~~~~~~~~--h~ 526 (730)
.+ ...++.+.+ .++.++.++ .|.-+|..+|+.+-.++. |.
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~ 278 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD 278 (488)
T ss_pred CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC
Confidence 01 134445545 777776554 799999999998877642 21
Q ss_pred C----CeEEEEEe----CCCC---EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 527 N----RITCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 527 ~----~V~~l~~s----pd~~---~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
. ......+. -++. .++.++.+|.+...|..+++..-..... ...++.+| +..++.
T Consensus 279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------EQPMAYDP-GLVYLGA 345 (488)
T ss_pred CcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------------ccccccCC-ceEEEcc
Confidence 1 00111111 1333 5778888999999999998754433221 00122222 111111
Q ss_pred -----------------EecCcEEEEeCCCCceeeeecCCCCC------CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 595 -----------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 595 -----------------s~dg~I~iwd~~~~~~~~~~~~~~h~------~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
..+|.+.-.|+.+++.+-......+. .+...-.....+..|++++.||.|+.+|..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 13577888899888887666432111 1111111123567899999999999999999
Q ss_pred ceEEEEeec
Q 004789 652 LELRCQINL 660 (730)
Q Consensus 652 ~~~~~~~~~ 660 (730)
|+.+.....
T Consensus 426 G~~lW~~~~ 434 (488)
T cd00216 426 GKELWKFRT 434 (488)
T ss_pred CceeeEEEC
Confidence 999887763
No 315
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.6e-06 Score=85.50 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcc--------hHHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhh
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFF--------NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFEL 84 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 84 (730)
|.-+-|+|..+|.-.||..+|..|-++|.+.- ++...++++++|+...|+..-+.-+ ..-......+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk-~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHK-VELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHhccchhhhHH
Confidence 66688999999999999999999999998872 3888999999999888887664332 11111123388999
Q ss_pred hhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccc
Q 004789 85 RKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL 132 (730)
Q Consensus 85 ~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 132 (730)
+.|.|+||+..+++.+|+.+.++.+.|....+.++++....+|.++..
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 999999999999999999999999999988899999999999998753
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.1e-05 Score=88.56 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=131.0
Q ss_pred CCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE
Q 004789 445 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 522 (730)
Q Consensus 445 h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~ 522 (730)
....+.|+++++++|+.|+ +|.|++++.... . .+...|... ..+| ++++|+.||+|.|-.+-+.+...++
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3467788888899999999 999999997633 3 333334332 5577 9999999999999999888877766
Q ss_pred cCCCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEec
Q 004789 523 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 597 (730)
Q Consensus 523 ~~h~~~V~~l~~spd-----~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~d 597 (730)
. ...++.+++++|+ .+.+++|+.-| +.++.-+--... ..+ ...... |+|.++.|. |.++|-+.|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v--~l~~~e---G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSV--VLSEGE---GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cce--eeecCc---cceEEEEec--CcEEEEecC
Confidence 5 5578999999998 46789999888 766653321000 111 122222 789999997 778888888
Q ss_pred CcEEEEeCCCCceeeeecCCCC----CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 598 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~~h----~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
-.|++||+.+++.+..+..... ......+.|.++.+ |+.| +..+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 8899999998888766654311 22334577776654 4444 56678888877
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.00013 Score=74.15 Aligned_cols=240 Identities=19% Similarity=0.092 Sum_probs=142.4
Q ss_pred CCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCc
Q 004789 444 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 517 (730)
Q Consensus 444 ~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~ 517 (730)
++...|..++|+ ..++..++ +..|+|.|+++..++..+..+ ..+++++|.-|. .|+.|...|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 688899999999 33678888 999999999999999999888 889999999988 89999999999999998653
Q ss_pred e-EEEEcC--CCCCeEEEEE------eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC
Q 004789 518 T-KAKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 588 (730)
Q Consensus 518 ~-~~~~~~--h~~~V~~l~~------spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd 588 (730)
- +..+.+ ...+|..++. .+.|..++..+.+ +..|.+.....-. .++ ...+.. +...+++..+-
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~-p~v--lele~p---G~cismqy~~~ 341 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL-PCV--LELEPP---GICISMQYHGV 341 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC-Ccc--cccCCC---cceeeeeecCc
Confidence 2 222221 2234444433 2234445444432 4566665422100 010 111111 45666777775
Q ss_pred CcEEEEE--ecC---cEE---E-EeCCCCceeeeecCCCCCCC-----eEEEEE-ecCCCEEE-EEEcCCeEEEEECCCc
Q 004789 589 QIHLLSI--HEG---QID---V-YEAPTLNHTSQLVPDKMDLP-----ITYATY-SCDGKCIY-VSCKSGHVKVFDTSTL 652 (730)
Q Consensus 589 g~~l~~s--~dg---~I~---i-wd~~~~~~~~~~~~~~h~~~-----v~~~~~-spdg~~l~-sgs~dg~I~iwd~~~~ 652 (730)
.+.++.+ .+. +++ . -|..+|..+-.-+....+.. -....+ .++..+++ +|...+.+.+||..+.
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 5665553 211 111 1 12223333322111000110 011112 34555555 4445588999999999
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCC-CEEEEEeCCCcEEEEeCCC
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~-~~las~s~Dg~I~iWd~~~ 704 (730)
+.++.+.. +.+|. .++....++ .+|++-+ |..++|+..+.
T Consensus 422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred heeeeccc---------Cccee--ecceeecCCcchhhhee-cceEEEEecCC
Confidence 99988864 34566 666554344 4566654 66888887654
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.5e-06 Score=87.38 Aligned_cols=215 Identities=13% Similarity=0.055 Sum_probs=145.6
Q ss_pred CCCCeEEEEEcCCCeEEEEECCCcEEEEecCC--C-ceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCc
Q 004789 484 PPPIATYFILLPQDLFAFGFDDSSILVHCPCT--K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK 559 (730)
Q Consensus 484 ~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~--~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~~~~ 559 (730)
|...|+.+......++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+-++..+.+++. |..++++|+.+..
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 66777777665544899999999999998543 2 344555668889999999999999999777 9999999998743
Q ss_pred eecceeecccccCCCCCCCCeEEEEEec-CC-cEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 004789 560 KLCSKFLHSFQTGLVPETTIVNHIQFHP-DQ-IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 635 (730)
Q Consensus 560 ~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg-~~l~~s--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 635 (730)
......+. .-| +.+. ...++ |- ..++++ .++.|.++|-....+-..+...-|..+|..+.+.+-+..+
T Consensus 88 minmiKL~-----~lP--g~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 88 MINMIKLV-----DLP--GFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred hhhhcccc-----cCC--CceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 32222222 111 1222 12222 11 234444 7899999998765533333344579999999999999999
Q ss_pred EEEEcCCeEEEEECCC------ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 636 YVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 636 ~sgs~dg~I~iwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
++....|.|.-|.... .++...+....+.- |--...-.+.++.|+| ++..+.+-+.|..|++++..+++..
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy-~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY-GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhh-cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 9999999999999873 11111111110000 1001112244899999 8999999999999999999999653
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=3.2e-05 Score=85.60 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=129.0
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCC-eEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCceec-c
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC-S 563 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~~~-~ 563 (730)
+|++.+ .++.|+.+|.|.+++ ++-+.++.++.+... |..+....+.++|++.+.|+ .+++||+...+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 356667 999999999999988 334555777777666 44443333446888877665 48999997643211 1
Q ss_pred eee-----cccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC--CCceeeeecCCCCCCCeEEEEEecCCCEE
Q 004789 564 KFL-----HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCI 635 (730)
Q Consensus 564 ~~i-----~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~l 635 (730)
..+ .+...+.. ..++.+++.+.+-+.+|+| .+|.|..+.-. ..+-.+.-..+....+|+.+++..+++.+
T Consensus 109 ~c~~~~ri~~~~np~~--~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTN--PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCC--CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 122 11111211 2688999999998888888 88998888522 11111111122338899999999988874
Q ss_pred EEEEcCCeEEEEECCCceE-EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 636 YVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 636 ~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
+-...-..|.+|.+....+ .+.+. +++..++ |.++++.. ..|++|+ +..|.+|+......-|.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t-~qfIca~-~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCC-ccEEEec-CceEEEEcCCCcceeee
Confidence 4444567799999884442 23333 3355566 88888833 3355554 34688888876655444
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=86.18 Aligned_cols=152 Identities=9% Similarity=0.105 Sum_probs=111.1
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 423 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~ 423 (730)
|.. ++.|.+..|-|-++. ++.-+.+. .++.|.++.|.-.++.+..|..+|.|...|++....
T Consensus 225 gyh-fs~G~sqqv~L~nve----tg~~qsf~-----sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-------- 286 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVE----TGHQQSFQ-----SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-------- 286 (425)
T ss_pred eee-ecccccceeEEEEee----cccccccc-----cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--------
Confidence 444 444555666666764 33333332 478899999999999999999999999999876532
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceE---EEEEcCCCCCeEEEE--Ec
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFI--LL 494 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~---~~~~~~~~~~v~~i~--~s 494 (730)
..+.+.+.+. |...|+++..- +++|++.+ +|+|++||.+--++ +.++.+|...-.-+- +.
T Consensus 287 --------G~~~~a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 287 --------GNGWCAQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred --------CCCcceEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence 1122333332 88888887655 77888877 99999999987666 888988866443333 34
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 524 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 524 (730)
+.. .+++++.|...+||.+++|..+.++..
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 444 888899999999999999999988763
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=3.4e-07 Score=100.32 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=141.9
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC--cEE
Q 004789 475 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLC 551 (730)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg--~I~ 551 (730)
.+..+++..|....+|++|+-+. .|++|+..|.|+++++.+|.......+|...|+-+.=+.||..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44556777888999999999988 999999999999999999999999999999999999999998877655433 467
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC--CCCCeEEEEE
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK--MDLPITYATY 628 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~--h~~~v~~~~~ 628 (730)
+|++.+. ..+.+++ ..-.++.|+.....-+.| ......+||+.++..+.++..+. ....-..+.|
T Consensus 1171 LW~~~s~----~~~~Hsf--------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1171 LWDASST----GGPRHSF--------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred Hhccccc----cCccccc--------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 9998761 1222311 234478888764444444 44668999999998887754321 1223367889
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 629 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 629 spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+|+..+++ +||. +||++..+.+.++..- . ++. .=.||| .|..++.-+ -|||+.+=
T Consensus 1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~f--------t--~~~-~G~FHP-~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQF--------T--DYG-GGGFHP-SGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred CCCcceEe---eCce--eeeeccHHHHhhhhhh--------e--ecc-cccccC-CCceEEeec-----hhhhhHHH
Confidence 99988776 4664 7999988777666521 1 221 335788 677777765 37777654
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.8e-06 Score=59.48 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=36.9
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 554 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd 554 (730)
++++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=4.8e-05 Score=83.61 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=117.5
Q ss_pred CcEEEEee--CCEEEEEEcCCceEEEEEcCC-CCCeE-------------------EEEEcCCC-eE-EEEECCCcEEEE
Q 004789 456 GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIAT-------------------YFILLPQD-LF-AFGFDDSSILVH 511 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~-~~~v~-------------------~i~~spdg-~l-~sgs~dg~I~iw 511 (730)
|+||+.-. +..|-..++...++.+.+.-+ ...+. .+=+.||| .+ .+.-..+.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 77888887 577888888777665554311 11111 22234566 33 223334567788
Q ss_pred ecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC----------------------------------------CCcEE
Q 004789 512 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC 551 (730)
Q Consensus 512 d~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~----------------------------------------dg~I~ 551 (730)
|..+.+...++.- .+....++++|+|+++++.+. ++.|.
T Consensus 221 D~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 221 DAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred ECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 8887776666542 234456778888888776651 23456
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce------------eeeecCC
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH------------TSQLVPD 617 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~------------~~~~~~~ 617 (730)
+.|..+........+..++.+ .....+.++|||++++++ .++++.++|+.+.+. ..+...
T Consensus 300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 666554000000112222333 346789999999999984 689999999987553 233322
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 618 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 618 ~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
.......+|.++|....+-.-|..|..|++.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 34455778999998888888999999999876
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1e-05 Score=88.90 Aligned_cols=189 Identities=18% Similarity=0.231 Sum_probs=128.3
Q ss_pred CCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee
Q 004789 486 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 486 ~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 565 (730)
..++|++++.. .|+-|+-+|.|++++.. +.. .+...|+.. .-+|.++++|+.||+|.|-.+-+.+......
T Consensus 40 D~is~~av~~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVHDK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhhcc-eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 45667777544 89999999999999976 333 344445543 6689999999999999999888755433333
Q ss_pred ecccccCCCCCCCCeEEEEEecC-----CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spd-----g~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
++ .++.+++++|+ .+.+++| ..| +.++.-+=.........+...++|.+++|. |.++|-++
T Consensus 111 f~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 111 FK----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred cC----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 33 47899999997 4566664 555 777753311111112222348999999996 77888887
Q ss_pred cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 640 KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 640 ~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.+| |+|||+.+++.+..+.+..-.+ ......-.+.|.+ ...|+.| ...+|+|..+..
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 666 8999999999888777543111 1223344788987 3456555 445799988873
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.26 E-value=0.00028 Score=81.29 Aligned_cols=268 Identities=10% Similarity=0.093 Sum_probs=154.0
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 458 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~ 458 (730)
.+.|.++.|..++.-++.+...|.|.+-|.++... .++ +.-...|.+++|+ ++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------eiv-----g~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------EIV-----GNVDNGISAASWSPDEEL 123 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-------------------eee-----eeccCceEEEeecCCCcE
Confidence 47899999999999999999999998876655433 011 1356789999999 777
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCc-----eEEEEc-----CCCC
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-----TKAKLK-----GHQN 527 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~-----~~~~~~-----~h~~ 527 (730)
++..+ .+++.+ ...+..++....-+ ..-.+.+.++.++....=.-+.-..|+ .+...+ .-.+
T Consensus 124 l~liT~~~tll~-mT~~f~~i~E~~L~------~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 124 LALITGRQTLLF-MTKDFEPIAEKPLD------ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred EEEEeCCcEEEE-Eeccccchhccccc------cccccccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence 77777 455544 33434333322111 111111233444433311111111110 000000 0122
Q ss_pred CeEEEEEeCCCCEEEEE-----eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E---ecC
Q 004789 528 RITCLAYSLSLNVLVSS-----GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEG 598 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~-----s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s---~dg 598 (730)
.=++|.|.-||.++++. ...+.|++||-.. .. +.+..... +.-.+++|-|.|..+++ . +|+
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~L------ns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-AL------NSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hh------hcccCccc---ccccceeecCCCCeEeeeeecCCCC
Confidence 33578999999998873 2237899999873 21 11111111 34458999999999998 2 567
Q ss_pred cEEEEeCCCCceeeeecC--CCCCCCeEEEEEecCCCEEEE---EEcCCeEEEEECCCceE--EEEeecccccCCCCccc
Q 004789 599 QIDVYEAPTLNHTSQLVP--DKMDLPITYATYSCDGKCIYV---SCKSGHVKVFDTSTLEL--RCQINLTAYAQPGTISL 671 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~--~~h~~~v~~~~~spdg~~l~s---gs~dg~I~iwd~~~~~~--~~~~~~~~~~~~gh~~~ 671 (730)
.|.+|.- +|-....+.. ......+..++|+.++..|++ ......|++|.+.+..- .+.+..+ .
T Consensus 267 ~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--------~- 336 (1265)
T KOG1920|consen 267 DIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--------Q- 336 (1265)
T ss_pred cEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc--------c-
Confidence 7999985 3433332221 112444899999999999987 55556699999877542 2222211 1
Q ss_pred ceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 672 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 672 ~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
.. -+.|+|.....+..-..+|...+++.
T Consensus 337 -~~--~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 337 -KA--LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -cc--cccccCCCceeEEEEecCCcEEEEEE
Confidence 11 25677755555555556665555544
No 326
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.22 E-value=0.0028 Score=71.19 Aligned_cols=293 Identities=14% Similarity=0.045 Sum_probs=161.5
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 471 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd 471 (730)
+..+++++.++.|.-.|..+++. +|...................-..+++.+..++.++ ++.+.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~------------lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE------------LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce------------eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence 44577788888898889888875 565432210000000000000122345555566666 99999999
Q ss_pred cCCceEEEEEcCC--C--CCeEE-EEEcCCCeEEEEE------CCCcEEEEecCCCceEEEEcCCC--------------
Q 004789 472 LETFQTLATFANP--P--PIATY-FILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ-------------- 526 (730)
Q Consensus 472 ~~t~~~~~~~~~~--~--~~v~~-i~~spdg~l~sgs------~dg~I~iwd~~~~~~~~~~~~h~-------------- 526 (730)
.++|+.+...... . ..+++ ..+. ++.++++. .+|.|..+|.++|+.+-.+..-.
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~ 215 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVG 215 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccc
Confidence 9999998776532 1 11211 1111 34455543 26899999999998876653211
Q ss_pred -----------------CCeE-EEEEeCCCCEEEEEeCC-----C-----------cEEEEEcCCCceecceeecccccC
Q 004789 527 -----------------NRIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 527 -----------------~~V~-~l~~spd~~~l~s~s~d-----g-----------~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
..+. .+++.|...+++.+... + .|.-.|+++++..-.. + ...
T Consensus 216 ~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~--Q--~~~ 291 (527)
T TIGR03075 216 GEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY--Q--TTP 291 (527)
T ss_pred cccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee--e--CCC
Confidence 1111 24566666666665421 2 5667788887654322 2 111
Q ss_pred CCCC----CCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeee--------ecC--CCCC-CC-----------
Q 004789 573 LVPE----TTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQ--------LVP--DKMD-LP----------- 622 (730)
Q Consensus 573 h~~~----~~~v~~l~~spdg~---~l~~-s~dg~I~iwd~~~~~~~~~--------~~~--~~h~-~~----------- 622 (730)
|... .....-+.+..+|+ .++. ..+|.+++.|..+|+.+.. +.. .... .+
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~ 371 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADG 371 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCC
Confidence 1100 01111222334665 4444 4889999999999988622 100 0000 00
Q ss_pred -----------------eEEEEEecCCCEEEEEEcC---------------------------------CeEEEEECCCc
Q 004789 623 -----------------ITYATYSCDGKCIYVSCKS---------------------------------GHVKVFDTSTL 652 (730)
Q Consensus 623 -----------------v~~~~~spdg~~l~sgs~d---------------------------------g~I~iwd~~~~ 652 (730)
-..++++|+..+++....+ |.|.-+|+.+|
T Consensus 372 ~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tG 451 (527)
T TIGR03075 372 KKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITG 451 (527)
T ss_pred CCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCC
Confidence 0125666766666544333 45677777777
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
+..-..... .+...-.+.- .+..++.++.||.++.+|..+|+..|....+
T Consensus 452 k~~W~~~~~---------~p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 452 KIVWEHKED---------FPLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeeEecCC---------CCCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 766555421 0001001111 3457777888999999999999999987553
No 327
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.21 E-value=1.2e-06 Score=66.52 Aligned_cols=53 Identities=30% Similarity=0.540 Sum_probs=44.0
Q ss_pred hHHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCCh
Q 004789 45 NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHER 98 (730)
Q Consensus 45 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 98 (730)
++..++++|+.|+|+.|+..+......-....+. +.|.|++|+|+|||+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence 3788999999999999999998886443333433 9999999999999998865
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.21 E-value=4.7e-06 Score=57.34 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004789 475 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 512 (730)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd 512 (730)
|+++.++.+|...|++++|+|++ .|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.18 E-value=0.00026 Score=81.54 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=132.8
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
.+..|+..+..+..+|.|.+-|.... .-++.. .-.+.|.+++||||++.++..+..+++.+-..
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg------~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-------- 138 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETL--ELEIVG------NVDNGISAASWSPDEELLALITGRQTLLFMTK-------- 138 (1265)
T ss_pred EEecccceEEEEecCCcEEEEccccc--ceeeee------eccCceEEEeecCCCcEEEEEeCCcEEEEEec--------
Confidence 67778888888889999998876521 111111 14688999999999999999999888876432
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCEEEEEEcCCceE-EEEEcCCCCCeEEEEEcCC
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLPQ 496 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~I~vwd~~t~~~-~~~~~~~~~~v~~i~~spd 496 (730)
.|++-..+.+.... ...+..-.+-|- ...=+-|+.|.-..-+...... ......+ ..=+++.|-.|
T Consensus 139 ---------~f~~i~E~~L~~d~--~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgD 206 (1265)
T KOG1920|consen 139 ---------DFEPIAEKPLDADD--ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGD 206 (1265)
T ss_pred ---------cccchhcccccccc--ccccccceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEccC
Confidence 12211111110000 011222223333 1122222222111111110000 0000111 22247999999
Q ss_pred C-eEEEEE----CC-CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCceecceeec
Q 004789 497 D-LFAFGF----DD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 497 g-~l~sgs----~d-g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s---~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
| ++|+.. .+ ..|++||-+ |..-..-....+.-.+++|-|.|..+++.. .|+.|.+|.-++-+. ....+.
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~f~l~ 284 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GEFVLP 284 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cccccC
Confidence 9 877732 23 789999976 543322222334446899999999988753 456798988765221 112222
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEE---EecCc-EEEEeCCCCc
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLS---IHEGQ-IDVYEAPTLN 609 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~---s~dg~-I~iwd~~~~~ 609 (730)
.+... ..+..++|+.++..|++ ...+. |++|-+.+..
T Consensus 285 -~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 285 -FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred -Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22222 34899999999999998 34444 9999987643
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=0.0045 Score=59.81 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=88.8
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
.+++.|+..+.+.--|... +....... -..+|.+-+.- -|++++.|...|.+++.+..++..
T Consensus 24 T~v~igSHs~~~~avd~~s---G~~~We~i-----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--------- 85 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQS---GNLIWEAI-----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--------- 85 (354)
T ss_pred eEEEEecCCceEEEecCCC---CcEEeehh-----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---------
Confidence 3455666666666656542 11111111 12333333332 577899999999999999888864
Q ss_pred eeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC-CCeEEEE
Q 004789 425 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QDLFAFG 502 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp-dg~l~sg 502 (730)
+|+......+ ..-..+++++..+.+|+ |++.+..|..+..++.+.+...+...+-+..| ++.|+.+
T Consensus 86 ---~w~f~~~~~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 86 ---IWNFVILETV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred ---eeeeeehhhh---------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 4553211111 11113445588999999 99999999999999998876666566667777 3466666
Q ss_pred ECCCcEEEEecCCC
Q 004789 503 FDDSSILVHCPCTK 516 (730)
Q Consensus 503 s~dg~I~iwd~~~~ 516 (730)
...|.|.--..+++
T Consensus 154 ~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPY 167 (354)
T ss_pred eccceEEEEccCCC
Confidence 66676666555554
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.0046 Score=64.64 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=135.2
Q ss_pred EEEecCCCEEEEEeC-CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee
Q 004789 387 LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 463 (730)
Q Consensus 387 v~fspdg~~L~s~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s 463 (730)
=+|.+||+.|+.++. ||.-.+|- .|..+++..+.+-.. ........++ ++.++-..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~-------------------lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYL-------------------LDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEE-------------------EETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEE-------------------EEcccCEEEECccCC--CCCccceEEecCCCeEEEEE
Confidence 367899987766555 66544442 344455555543311 1112223344 66655444
Q ss_pred -CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc--CCCeEEEEEC-----------------------CCcEEEEecCCCc
Q 004789 464 -GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGFD-----------------------DSSILVHCPCTKK 517 (730)
Q Consensus 464 -dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s--pdg~l~sgs~-----------------------dg~I~iwd~~~~~ 517 (730)
+..+.-.|+++.+....+..+...+-...|. .|+..++|.. .+.|...|+.+|+
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 6789999999988877777777766556664 3343333221 1346677888887
Q ss_pred eEEEEcCCCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 518 TKAKLKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 518 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
....+. ....+..+.|+|....+++-+.. ..|.+.|...... .++.....+ ..+..=-|.|||.
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~~-----e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRMEG-----ESVGHEFWVPDGS 250 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TT-----EEEEEEEE-TTSS
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCCC-----cccccccccCCCC
Confidence 655554 55678899999966555544332 2344444443221 222211111 3566778999999
Q ss_pred EEEE-Ee-----cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC----------------eEEEEE
Q 004789 591 HLLS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----------------HVKVFD 648 (730)
Q Consensus 591 ~l~~-s~-----dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg----------------~I~iwd 648 (730)
.+.- +. +..|.-+|+.+++...... .......-.++||++++.=+.|. .|++++
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 8876 41 3357888888876543332 22344566678999887544432 577888
Q ss_pred CCCceEEEEeec--ccccCCCCcccceeeEEEEEecCCCCEEE-EEeCCCcEEEEeCC
Q 004789 649 TSTLELRCQINL--TAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPL 703 (730)
Q Consensus 649 ~~~~~~~~~~~~--~~~~~~gh~~~~v~~~~v~~sp~~~~~la-s~s~Dg~I~iWd~~ 703 (730)
+..+........ +..+..|+.. +.--.+.|+| |+++++ ++...|...||-++
T Consensus 327 ~~~~~~~~l~~h~~sw~v~~~~~q--~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 327 VEAGRFRKLARHDTSWKVLDGDRQ--VTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTTEEEEEEE-------BTTBSS--TT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred cccCceeeeeeccCcceeecCCCc--cCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 887765432211 1111223211 2222689999 677655 55577877777654
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.14 E-value=6.8e-05 Score=83.46 Aligned_cols=184 Identities=13% Similarity=0.156 Sum_probs=126.6
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 577 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~ 577 (730)
.++.|+....+..+|+++.+..+...-..+.|+-+. .+++.+.+|...|+|.+-|.++. ..++ ....|.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~-----~~ih-t~~aHs--- 217 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF-----ETIH-TFDAHS--- 217 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcC-----ceee-eeeccc---
Confidence 677888778899999998887776654444454443 46889999999999999999983 4455 567777
Q ss_pred CCeEEEEEecCCcEEEE-Ee---------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEE
Q 004789 578 TIVNHIQFHPDQIHLLS-IH---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKV 646 (730)
Q Consensus 578 ~~v~~l~~spdg~~l~~-s~---------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~sgs~dg~I~i 646 (730)
+.|..+.. .|+.|++ |. |.-|++||++..+.+..+... ....-+.|.|. ...+++.+..|...+
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceee
Confidence 67766555 4778887 42 334899999988776555432 22234566664 356778888999999
Q ss_pred EECCCc-eE---EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004789 647 FDTSTL-EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 709 (730)
Q Consensus 647 wd~~~~-~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w 709 (730)
-|..+. .+ +..+.+ .| ..+. ++++++ +++.+|.|..+|.|.+|. ...++.+
T Consensus 293 vd~~~lsNP~~~~~~v~p-----~~---s~i~--~fDiSs-n~~alafgd~~g~v~~wa-~~~~P~F 347 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNP-----NG---SGIS--AFDISS-NGDALAFGDHEGHVNLWA-DRPQPQF 347 (1118)
T ss_pred ccccccCCCccceeEEcc-----CC---Ccce--eEEecC-CCceEEEecccCcEeeec-CCCCCcc
Confidence 884321 11 111111 12 2245 889999 899999999999999999 4444433
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00036 Score=75.80 Aligned_cols=223 Identities=10% Similarity=0.046 Sum_probs=111.7
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 459 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l 459 (730)
.-....+.++|+|+++++ +.||.-.|+.....+. ...+.-..++|. .+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSEE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc----------------------------cccCceeEEEEecCccE
Confidence 344678999999998777 5666777765222111 012334467787 5667
Q ss_pred EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC
Q 004789 460 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 537 (730)
|+-. .++|.++.--+.+....+... ..+..+-. | .|+..+.+ .|.+||+.+++.++.+... .|..+.|+++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 7666 888999743222222233322 12333332 7 66666554 8999999999999999743 3899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCc------eecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCcee
Q 004789 538 LNVLVSSGADAQLCVWDAVGWK------KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 611 (730)
Q Consensus 538 ~~~l~s~s~dg~I~vwd~~~~~------~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~ 611 (730)
|++++..+.+ .+.+++..... ......+....+-. ..|.+.+|..+ .++-...+.|+.+ ..|+.-
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~~lkYl--~~Ge~~ 226 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSNHLKYL--VNGETG 226 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEEE--ETTEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCCeEEEE--EcCCcc
Confidence 9999988754 77787755420 00000111011101 46888888866 3333333366653 334322
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
.+.. -..++.=+.+.++.+.++....|+.|..+.+..
T Consensus 227 -~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 -IIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -eEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2211 145666667777667777777888887777653
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.0022 Score=68.66 Aligned_cols=267 Identities=18% Similarity=0.162 Sum_probs=141.8
Q ss_pred ecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEE
Q 004789 390 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 467 (730)
Q Consensus 390 spdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I 467 (730)
|||+++++..... -..|.. +.....-++|..++....... ....+....|+ |+.++...++.|
T Consensus 1 S~d~~~~l~~~~~--~~~~r~----------s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~~nl 65 (353)
T PF00930_consen 1 SPDGKFVLFATNY--TKQWRH----------SFKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRDNNL 65 (353)
T ss_dssp -TTSSEEEEEEEE--EEESSS----------EEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEETTEE
T ss_pred CCCCCeEEEEECc--EEeeee----------ccceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEecCce
Confidence 6888887775441 222211 111112345555555444322 24678889999 999999999999
Q ss_pred EEEEcCCceEEEEEc-CC----------------CCCeEEEEEcCCC-eEEEEECC-C----------------------
Q 004789 468 SIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD-S---------------------- 506 (730)
Q Consensus 468 ~vwd~~t~~~~~~~~-~~----------------~~~v~~i~~spdg-~l~sgs~d-g---------------------- 506 (730)
.+++..++...+.-. +. -+.-..+-||||| .|+....| .
T Consensus 66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES 145 (353)
T ss_dssp EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE
T ss_pred EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc
Confidence 999998875443221 20 1122578899999 76654332 1
Q ss_pred -------------cEEEEecCCCceEE--EE---cCCCCCeEEEEEeCCCCEEEEE--eCCC---cEEEEEcCCCceecc
Q 004789 507 -------------SILVHCPCTKKTKA--KL---KGHQNRITCLAYSLSLNVLVSS--GADA---QLCVWDAVGWKKLCS 563 (730)
Q Consensus 507 -------------~I~iwd~~~~~~~~--~~---~~h~~~V~~l~~spd~~~l~s~--s~dg---~I~vwd~~~~~~~~~ 563 (730)
.+.|+|+.+++... .. ..-...+..+.|.+++..++.. +.+. .+.++|..++.....
T Consensus 146 ~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~ 225 (353)
T PF00930_consen 146 IRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV 225 (353)
T ss_dssp EE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE
T ss_pred cccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE
Confidence 23445555443321 11 1233457788999998844433 3332 366778876543211
Q ss_pred eeecccccCCCCCCCCeEEEEEe-cCCcEEEE-E-ecCc--EEEEeCCCCceeeeecCCCCCCCeEE-EEEecCCCEEE-
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEGQ--IDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIY- 636 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~s-pdg~~l~~-s-~dg~--I~iwd~~~~~~~~~~~~~~h~~~v~~-~~~spdg~~l~- 636 (730)
......+-- ..-....|. +++..++. + .+|. |++++...+. .+.+.. + ...|.. +.++++++.|+
T Consensus 226 --~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~-G-~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 226 --LEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS-G-DWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp --EEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS--S-SS-EEEEEEEECTSSEEEE
T ss_pred --EEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc-C-ceeecccceEcCCCCEEEE
Confidence 111111111 122356665 66666655 4 5554 7777876555 334443 2 566655 67788877665
Q ss_pred EEEcC----CeEEEEECC-CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 637 VSCKS----GHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 637 sgs~d----g~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
++..+ ..|+.-++. ++.. ..+... .+.-. .+.||| ++++++-.
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~--------~~~~~--~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEP-KCLTCE--------DGDHY--SASFSP-DGKYYVDT 345 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEE-EESSTT--------SSTTE--EEEE-T-TSSEEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCCe-EeccCC--------CCCce--EEEECC-CCCEEEEE
Confidence 55443 356666777 5554 444421 11114 889999 77776643
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00086 Score=73.25 Aligned_cols=279 Identities=11% Similarity=0.080 Sum_probs=153.0
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|...|.--+++..+++++.|++-|.+++|+-..+..... . .++....+.....+ ..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-----------~-----------~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-----------K-----------NEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-----------c-----------ccCccceEEEEEecchhH
Confidence 677788888999999999999999999998766554111 0 01122333344455 55
Q ss_pred EEEEee-CCEEEEEEcCCceEE-----EEE-cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC----ceEEEEcCC
Q 004789 458 HLFSAS-GGKISIFSLETFQTL-----ATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----KTKAKLKGH 525 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~-----~~~-~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~----~~~~~~~~h 525 (730)
++|.|+ .|.|.++-+..+... ... ..|...|++++|++++ .+++|...|.|..-.+.+. -..+.+-..
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 566666 789999987663321 111 1467899999999999 9999999999998887762 111222234
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCC-eEEEEEecC----CcEEEEEecCcE
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPD----QIHLLSIHEGQI 600 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~-v~~l~~spd----g~~l~~s~dg~I 600 (730)
.+.|..+.+.. +..|++ +.-. ..++++...+. ..+. .+... +. -...+|-|. .+-.+.+..-..
T Consensus 170 ds~IVQlD~~q-~~LLVS-tl~r-~~Lc~tE~eti---~QIG--~k~R~---~~~~~GACF~~g~~~~q~~~IycaRPG~ 238 (726)
T KOG3621|consen 170 DSEIVQLDYLQ-SYLLVS-TLTR-CILCQTEAETI---TQIG--KKPRK---SLIDFGACFFPGQCKAQKPQIYCARPGL 238 (726)
T ss_pred CcceEEeeccc-ceehHh-hhhh-hheeecchhHH---HHhc--CCCcC---CccccceEEeeccccCCCceEEEecCCC
Confidence 56677776652 333433 3222 34556554221 1111 11111 11 234455443 223333333345
Q ss_pred EEEeCC-CCceeeeecCCC-----------CC-----------CCeEEEEEe----cCCCEEEEEEcCCeEEEEECCCce
Q 004789 601 DVYEAP-TLNHTSQLVPDK-----------MD-----------LPITYATYS----CDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 601 ~iwd~~-~~~~~~~~~~~~-----------h~-----------~~v~~~~~s----pdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
|+|... .|..+++..-.. +. ..-..+.|. -.+..+++-++-| |||+|..+..
T Consensus 239 RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~ 317 (726)
T KOG3621|consen 239 RLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQ 317 (726)
T ss_pred ceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccce
Confidence 666543 244443321100 00 000111111 1223444444445 8899988776
Q ss_pred EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 654 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 654 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.+.-.. + ...|. .|+- .++-|..-..||.+++..+.+++
T Consensus 318 v~l~se-------~--~~DI~--dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 318 VYLWSE-------G--GHDIL--DVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred EEEeec-------C--CCcee--EEee---cCceEEEEecCCceeEEEeehhH
Confidence 554432 2 22244 5553 34556666677788888777663
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.00098 Score=71.52 Aligned_cols=270 Identities=11% Similarity=0.109 Sum_probs=139.3
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEe
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 462 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~ 462 (730)
.|+++.|+++..-|++|...|.|.||.+...+.... ...+.-.+.....+ .|.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~----~~~~~~~~~~~~~~-------~~~---------------- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN----REQPPDLDYNFRRF-------SLN---------------- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S---------GG----------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc----cCCCcccCcccccc-------ccc----------------
Confidence 488999999988899999999999999876654210 00000000000000 000
Q ss_pred eCCEEEEEEcC---------CceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEE--cC------C
Q 004789 463 SGGKISIFSLE---------TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------H 525 (730)
Q Consensus 463 sdg~I~vwd~~---------t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~--~~------h 525 (730)
++.-.+-|+. ...+..-+....+.|++++.|.-|++++|..+|.+.|.|++....+..- .. .
T Consensus 56 -~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 56 -NSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp -GSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-
T ss_pred -CCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccccccccc
Confidence 0000111111 1223344455688999999987779999999999999999988777652 11 2
Q ss_pred CCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEEcCC--CceecceeecccccCCCCCCCCeEEEE-EecC------
Q 004789 526 QNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ-FHPD------ 588 (730)
Q Consensus 526 ~~~V~~l~~sp-----d~---~~l~s~s~dg~I~vwd~~~--~~~~~~~~i~~~~~~h~~~~~~v~~l~-~spd------ 588 (730)
...|+++.|.. |+ -.+++|+..|.+.+|.+.- +..-...... ....+. +.|..+. |+.+
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-B
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCccc
Confidence 35688888862 33 3688899999999998751 1111111111 111222 4555544 3221
Q ss_pred ---------------CcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEe-----cCCCEEEEEEcCCeEEEEE
Q 004789 589 ---------------QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-----CDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 589 ---------------g~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-----pdg~~l~sgs~dg~I~iwd 648 (730)
..+++++.+..|+++...+.+..+.... .......+++- ..+..|++-..+|.|++|.
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 1245557888999999988877665542 12333344552 3577888999999999999
Q ss_pred CCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 649 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
+..-+.+......... ....+. ..++.+ +|..++-.+.
T Consensus 289 LP~Lkei~~~~l~~~~----d~~~~~--~ssis~-~Gdi~~~~gp 326 (395)
T PF08596_consen 289 LPSLKEIKSVSLPPPL----DSRRLS--SSSISR-NGDIFYWTGP 326 (395)
T ss_dssp TTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SS
T ss_pred CCCchHhhcccCCCcc----cccccc--ccEECC-CCCEEEEeCc
Confidence 9998888777643111 011122 445566 6776655543
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00055 Score=76.18 Aligned_cols=204 Identities=12% Similarity=0.140 Sum_probs=131.7
Q ss_pred CeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCC-----cEEEEecCCC---
Q 004789 448 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-----SILVHCPCTK--- 516 (730)
Q Consensus 448 ~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg-----~I~iwd~~~~--- 516 (730)
.|.|+.-++..++.|+ +|.|.+++- ..+.++.+..+...+...-+.-++ .|++.+.|+ .|++||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5665555588888898 999988874 345557777777663333344444 666666554 5999998643
Q ss_pred ---ceEE--EEcC-----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 517 ---KTKA--KLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 517 ---~~~~--~~~~-----h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
.++. .+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.-+--..... ...-...+. .+|+.+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~----~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGK----EPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCC----CCceeeEEe
Confidence 2331 1222 356788999999999999999999999885332111111 111012222 689999999
Q ss_pred cCCcEE-EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 587 PDQIHL-LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 587 pdg~~l-~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.+++.+ .++....|.+|.+....+... ....|+..+.|.+|++....+++++ +..+++|+.....+-..+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~-~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLK-VLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCccee-eeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 998884 446778899999974332222 1234688899999987555344443 4679999988655544443
No 338
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.013 Score=65.87 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=141.1
Q ss_pred CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEeCcEEEEee-------CC
Q 004789 394 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GG 465 (730)
Q Consensus 394 ~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-------dg 465 (730)
..++.++.|+.+...|..+++. +|+....... ....+. .....+..++.+. +|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG 181 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence 4577888899999999888875 6664432110 001111 1112234444432 57
Q ss_pred EEEEEEcCCceEEEEEcCCCC-------------------------------Ce-EEEEEcCCC-eEEEEEC-----CC-
Q 004789 466 KISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFD-----DS- 506 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~-------------------------------~v-~~i~~spdg-~l~sgs~-----dg- 506 (730)
.|..+|.++|+.+..+..-.. .+ ..+++.|.. +++.+.. ++
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 899999999998876542111 11 133566655 5554441 12
Q ss_pred ----------cEEEEecCCCceEEEEcCCCCCeE---------EEEEeCCCC---EEEEEeCCCcEEEEEcCCCceecce
Q 004789 507 ----------SILVHCPCTKKTKAKLKGHQNRIT---------CLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 507 ----------~I~iwd~~~~~~~~~~~~h~~~V~---------~l~~spd~~---~l~s~s~dg~I~vwd~~~~~~~~~~ 564 (730)
+|.-.|+++|+..-.++.....+. -+....+|+ .++.++.+|.+++.|-.+++.....
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence 688889999998877765222121 122224665 6778999999999999998764211
Q ss_pred eec---cc------ccCC---------------C-----C-CCCCe--EEEEEecCCcEEEE-Ee---------------
Q 004789 565 FLH---SF------QTGL---------------V-----P-ETTIV--NHIQFHPDQIHLLS-IH--------------- 596 (730)
Q Consensus 565 ~i~---~~------~~~h---------------~-----~-~~~~v--~~l~~spdg~~l~~-s~--------------- 596 (730)
+.. .. ..+. . + ..+.+ ..++++|+..++++ ..
T Consensus 342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~ 421 (527)
T TIGR03075 342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK 421 (527)
T ss_pred cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence 000 00 0000 0 0 00000 12566666555544 11
Q ss_pred ------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 597 ------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 597 ------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
-|.|.-+|+.+++.+-.... ..+...-...-.+.+++.++.||.++.+|.++|+.+..+
T Consensus 422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~---~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE---DFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC---CCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 14578888888887765543 122111112235567888888999999999999998877
Q ss_pred ec
Q 004789 659 NL 660 (730)
Q Consensus 659 ~~ 660 (730)
..
T Consensus 499 ~~ 500 (527)
T TIGR03075 499 KT 500 (527)
T ss_pred eC
Confidence 64
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.0017 Score=70.56 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=116.4
Q ss_pred CCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcC
Q 004789 447 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 524 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~ 524 (730)
.....+.++ |++++.+++|...++.....+....-. -..++|.+.+.+|+-...+.|.++.--+......++.
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~-----g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS-----GLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE------SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc-----eeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 446678888 888888889999999865544433322 2368898866777777788999963222333233332
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 004789 525 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 604 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd 604 (730)
...+..+ |. |..|...+. +.|.+||..+++......+ ..|..+.|+++|.+++...+..+.|++
T Consensus 108 -~~~~~~I-f~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 108 -PFSVEKI-FG--GNLLGVKSS-DFICFYDWETGKLIRRIDV-----------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -SS-EEEE-E---SSSEEEEET-TEEEEE-TTT--EEEEESS------------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred -CcccceE-Ec--CcEEEEECC-CCEEEEEhhHcceeeEEec-----------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 2234444 22 777776654 4899999998543322111 248899999999999997777888887
Q ss_pred CCCC-----------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 605 APTL-----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 605 ~~~~-----------~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
.... .....+.. -...|.+.+|..| -++++. .. .|+- +-.|+.- .+. |-+.++
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~-~i~--------~ld~~~ 235 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETG-IIA--------HLDKPL 235 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEE-EEE--------E-SS--
T ss_pred ecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcc-eEE--------EcCCce
Confidence 6432 02222210 1567888888766 344443 33 6655 3344322 221 114457
Q ss_pred eeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 674 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+ -+.+.| ..+.+.....|+.|..+.+...
T Consensus 236 y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 236 Y--LLGYLP-KENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp E--EEEEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred E--EEEEEc-cCCEEEEEECCCCEEEEEECHH
Confidence 7 556667 5678888889999998887643
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00011 Score=81.01 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=78.0
Q ss_pred CcEEEEee-----CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCe
Q 004789 456 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 529 (730)
Q Consensus 456 ~~~l~s~s-----dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 529 (730)
..++++++ .|.|.||- ++|++.+... .+-.+++++|+|.. .|+.|-.-|.+.+|...+.+.-.....|..+|
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 44555554 37787774 4565433322 22345689999999 99999999999999988777666667799999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~ 557 (730)
..+.|+++|..++++..-|.+.+|....
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 9999999999999999999999998763
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.0011 Score=71.73 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=112.0
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE---ECC-CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG---FDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg---s~d-g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
..+.+-|.. |.....+......+..-+|+|++ .++.. ... ..++++|+.+++...... ..+.-...+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 455555555 66666666666677888999999 43332 222 369999999986655544 233344668999998
Q ss_pred EEEEEe-CCCc--EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecC--cEEEEeCCCCceee
Q 004789 540 VLVSSG-ADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTS 612 (730)
Q Consensus 540 ~l~s~s-~dg~--I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg--~I~iwd~~~~~~~~ 612 (730)
.|+.+. .||. |+++|+.++.. ..+..+. +.-..-.|+|||++++.. ..| .|.++|...+.. .
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~------~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ 319 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNL------PRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-T 319 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcc------eecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-e
Confidence 877554 4554 67778887431 1111211 233377899999999974 334 388888866554 3
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcC-Ce--EEEEECCCceEEEE
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKS-GH--VKVFDTSTLELRCQ 657 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~d-g~--I~iwd~~~~~~~~~ 657 (730)
.+... ...-....|||||++++..+.. |. |.+.|+.++.....
T Consensus 320 riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 320 RLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred Eeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 33332 2222277899999998876643 44 67777766654333
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.97 E-value=0.0021 Score=69.31 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=69.5
Q ss_pred EEEEeCCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEE
Q 004789 600 IDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 600 I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
-.+|++...+. +..... .....+.+++++|+...++.|+.||.|.+||...+..... ...+.+..
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------------ka~~~P~~ 304 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------------KAEFIPTL 304 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------------eecccceE
Confidence 35666654432 212221 3478899999999999999999999999999987743222 11244558
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 678 IAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 678 v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
++||| +|.++++|++-|.+.+||+.-..
T Consensus 305 iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 305 IAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 99999 89999999999999999997553
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0004 Score=70.79 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=78.2
Q ss_pred EEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCC-CEEEE
Q 004789 467 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVS 543 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s 543 (730)
+++.+..+.+....+..+...|..++|+|.. ++..++.+..|.|.|+++..++..+..+ ..+++++|.-|. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666666666667777888899999999988 7899999999999999999998888877 789999998876 45777
Q ss_pred EeCCCcEEEEEcCCCc
Q 004789 544 SGADAQLCVWDAVGWK 559 (730)
Q Consensus 544 ~s~dg~I~vwd~~~~~ 559 (730)
|...|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 7789999999999743
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.92 E-value=0.031 Score=57.47 Aligned_cols=229 Identities=14% Similarity=0.073 Sum_probs=134.6
Q ss_pred CEEEEEEcCCceEEEEEcCCCC-------CeEEEEEcCCC-eEEEE--ECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 465 GKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~-------~v~~i~~spdg-~l~sg--s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
..|.+||..|-.....+.-+.. ....++++.|| ++++. +-..+|.|.|+..++.+..+.. .+...-.-.
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~ 145 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPS 145 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEec
Confidence 4699999999988876553322 12346788888 55444 3445899999999998887763 222221122
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCC-CceecceeecccccCCCCCCCCeEEEEEecC-CcEEEEEecCcEEEEeCCCCcee-
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHT- 611 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~-~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~s~dg~I~iwd~~~~~~~- 611 (730)
. .+-+.+-|.||.+.-..+.. |+.. ...-. ++..... ..+..-++... +.++..+.+|.|+-.|+......
T Consensus 146 ~--~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~-~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 146 G--NRGFSMLCGDGSLLTVTLDADGKEA-QKSTK-VFDPDDD--PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp E--TTEEEEEETTSCEEEEEETSTSSEE-EEEEE-ESSTTTS---B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred C--CCceEEEecCCceEEEEECCCCCEe-Eeecc-ccCCCCc--ccccccceECCCCeEEEEecCCEEEEEeccCCcccc
Confidence 2 24577888899999988873 4332 11111 2222210 12234455554 45666788999999888654321
Q ss_pred -eeecCCC--------CCCCeEEEEEecCCCEEEEEEcC----------CeEEEEECCCceEEEEeecccccCCCCcccc
Q 004789 612 -SQLVPDK--------MDLPITYATYSCDGKCIYVSCKS----------GHVKVFDTSTLELRCQINLTAYAQPGTISLE 672 (730)
Q Consensus 612 -~~~~~~~--------h~~~v~~~~~spdg~~l~sgs~d----------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~ 672 (730)
..+..-. ..+.-.-+++++..+.|++-... ..|.++|+.+++.+.++.. ..+
T Consensus 220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~ 290 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHP 290 (342)
T ss_dssp EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEE
T ss_pred cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCc
Confidence 1221100 01223346777766556543321 2588889999999999874 234
Q ss_pred eeeEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeeec
Q 004789 673 LYPLVIAAHPLEPNRIALG-LTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 673 v~~~~v~~sp~~~~~las~-s~Dg~I~iWd~~~~~~~w~~ 711 (730)
+. +++.+.++..+|.+. ..++.+.+||..+|+..-..
T Consensus 291 ~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 291 ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 66 666677555566554 46899999999999876544
No 345
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.92 E-value=1.6e-05 Score=52.78 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHhHhcHHHHHHHHHHhcCCc
Q 004789 12 TYTHLITLIMKFLEEENFKESLQALEQESKIF 43 (730)
Q Consensus 12 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 43 (730)
.++++.++|+|||...||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999999975
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=1.4e-05 Score=85.64 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=151.8
Q ss_pred CCCCeeEEEEe---C-cEEEEee-CCEEEEEEcCCceE--EEEEcCCCCCeEEEEEcCCC--eEEEEE----CCCcEEEE
Q 004789 445 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH 511 (730)
Q Consensus 445 h~~~V~~l~~s---~-~~l~s~s-dg~I~vwd~~t~~~--~~~~~~~~~~v~~i~~spdg--~l~sgs----~dg~I~iw 511 (730)
....+.|+++. + ..++.|. +|.|.+-.++...- -....++....++++|++-+ .||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567788887 3 4577777 89999988765332 22344677788999999876 677663 35589999
Q ss_pred ecCCC--ceEEE--EcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 512 CPCTK--KTKAK--LKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 512 d~~~~--~~~~~--~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
|+.++ .+... +.+ ......+++|..+.+.+.+|...+.+.++|++.... ....+. . ..+..+.+.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn---T------k~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN---T------KYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh---h------hhcccceec
Confidence 99887 22222 222 334566888998889999999999999999984111 011111 1 256678888
Q ss_pred c-CCcEEEEEecCcEEEEe-CCCCc-eeeeecCCC--CCCCeEEEEEecCC-CEEEEEEcC-CeEEEEECCCc------e
Q 004789 587 P-DQIHLLSIHEGQIDVYE-APTLN-HTSQLVPDK--MDLPITYATYSCDG-KCIYVSCKS-GHVKVFDTSTL------E 653 (730)
Q Consensus 587 p-dg~~l~~s~dg~I~iwd-~~~~~-~~~~~~~~~--h~~~v~~~~~spdg-~~l~sgs~d-g~I~iwd~~~~------~ 653 (730)
| .+.++++..||.|.+|| .++-+ ++..+.... ....+..++|+|.. ..+++.+.| ++|+.+|+..- +
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccc
Confidence 8 78899987899999999 43322 222222111 12348899999843 245555554 88999997531 1
Q ss_pred EEEEee-cc--cccCCCCcccceeeEEEEEecCC-CCEEEEEeCCCcEEEEeCC
Q 004789 654 LRCQIN-LT--AYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 654 ~~~~~~-~~--~~~~~gh~~~~v~~~~v~~sp~~-~~~las~s~Dg~I~iWd~~ 703 (730)
....+. .. ++.+.+. -..|. +.+||+.+ -....++...-++.-+++.
T Consensus 285 n~~~~~~~s~~~~q~~~~-~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQ-CSGID--FFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ccceeeeccccccccccc-cccee--ecCcCcCCccceeEEeeccCChhhccch
Confidence 111111 11 1222221 24466 88898854 2345555555555555554
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=0.0039 Score=67.33 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCeeEEEEe---CcEEEEee-----CC----EEEEEEcCCceEEE--EEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEE
Q 004789 447 DSISCFALR---GSHLFSAS-----GG----KISIFSLETFQTLA--TFA-NPPPIATYFILLPQD-LFAFGFDDSSILV 510 (730)
Q Consensus 447 ~~V~~l~~s---~~~l~s~s-----dg----~I~vwd~~t~~~~~--~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~i 510 (730)
....++.|+ +..+.+.. +| .-.+|++..++..+ ... .....|.|++++|+. .++.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 344677777 55555432 23 34567776544321 111 467789999999999 9999999999999
Q ss_pred EecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 004789 511 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 511 wd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~ 557 (730)
||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 998766433 223456688999999999999999999999999875
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0025 Score=70.53 Aligned_cols=92 Identities=20% Similarity=0.101 Sum_probs=66.8
Q ss_pred CcEEEEeCCC-----CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceE------------EEEee
Q 004789 598 GQIDVYEAPT-----LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLEL------------RCQIN 659 (730)
Q Consensus 598 g~I~iwd~~~-----~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~------------~~~~~ 659 (730)
+.|.+.|.++ .+.+..+.. ......+.++|||+++++++. +++|.|.|+.+.+. .....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 4577788776 344444443 566788999999999886665 79999999988552 22221
Q ss_pred cccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 660 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 660 ~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
. | .+ ++..+|.+ +|+...|---|..|..|++..
T Consensus 373 v------G--lG---PLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L------G--LG---PLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c------C--CC---cceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1 2 22 45789988 788888888999999999976
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=5.2e-06 Score=88.75 Aligned_cols=203 Identities=13% Similarity=0.118 Sum_probs=131.0
Q ss_pred CCeEEEEEcCCC---eEEEEECCCcEEEEecCCCce--EEEEcCCCCCeEEEEEeC-CCCEEEEEe----CCCcEEEEEc
Q 004789 486 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSG----ADAQLCVWDA 555 (730)
Q Consensus 486 ~~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~sp-d~~~l~s~s----~dg~I~vwd~ 555 (730)
..+.|+++.-+. .+++|..+|.|-+-.++...- .....++....++++|++ |.++||+|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345566665443 889999999999988775432 233456788899999988 556777763 2567999999
Q ss_pred CCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEec-CC
Q 004789 556 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DG 632 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp-dg 632 (730)
.++-........ +..+.. ....+++|-.+.+.+.+| ....+.++|++.. .....+. ...+..+..+| .+
T Consensus 137 ~s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 137 NSLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSP 208 (783)
T ss_pred ccccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCC
Confidence 885211111111 111122 356688999888888886 6678999999732 2222221 45667778888 77
Q ss_pred CEEEEEEcCCeEEEEEC-CCce-EEEEeecccccCCCCcccc--eeeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCC
Q 004789 633 KCIYVSCKSGHVKVFDT-STLE-LRCQINLTAYAQPGTISLE--LYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLES 705 (730)
Q Consensus 633 ~~l~sgs~dg~I~iwd~-~~~~-~~~~~~~~~~~~~gh~~~~--v~~~~v~~sp~~~~~las~s~D-g~I~iWd~~~~ 705 (730)
.++++.. ||.|.+||. ..-+ ++..+. |...+ -..+.++|.|.....+++.+.| ++|+.+++..-
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~--------~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIIL--------RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHh--------hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 7887776 999999994 2211 111111 11111 1133999999766678888765 68999998643
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00064 Score=75.16 Aligned_cols=104 Identities=7% Similarity=-0.078 Sum_probs=77.1
Q ss_pred EEEEecCCCEEEEEeC----CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE-E
Q 004789 386 RLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-L 459 (730)
Q Consensus 386 ~v~fspdg~~L~s~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~-l 459 (730)
-..|+|...++|+++. .|.|.||--. |+..+.. ...-.+.+++|+ .+. |
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadt----------------------GEPqr~V---t~P~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADT----------------------GEPQRDV---TYPVHATSLCWHPEEFVL 74 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecC----------------------CCCCccc---ccceehhhhccChHHHHH
Confidence 3579999998888875 4778777322 2211100 122345679999 444 5
Q ss_pred EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecC
Q 004789 460 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 514 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~ 514 (730)
+.|- -|.+.+|...+.+.-.....|+.+|..+.||++| .++++..-|.|.+|...
T Consensus 75 a~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5565 6999999998877766677899999999999999 99999999999999765
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.0073 Score=62.47 Aligned_cols=185 Identities=13% Similarity=0.067 Sum_probs=111.7
Q ss_pred CCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcC-----CCCCeEEEEEcCCCeEEEEECC------------Cc
Q 004789 447 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQDLFAFGFDD------------SS 507 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~-----~~~~v~~i~~spdg~l~sgs~d------------g~ 507 (730)
..+.++..- +..|+++. ..+.+++.+++..+..+.. .....+.....|+|.+..+... |.
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred CCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 334444444 44454444 3345566666655333321 1235578889999933333332 33
Q ss_pred EEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--CceecceeecccccCCCCCCCCeEEEE
Q 004789 508 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ 584 (730)
Q Consensus 508 I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~~--~~~~~~~~i~~~~~~h~~~~~~v~~l~ 584 (730)
|+.+|. .+..++.+..+-..-+.++||||++.|+.+.. .+.|.-|++.. +......... ...... +..-.++
T Consensus 145 lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~---G~PDG~~ 219 (307)
T COG3386 145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEP---GLPDGMA 219 (307)
T ss_pred EEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCC---CCCCceE
Confidence 555554 56666777666667789999999988777655 47788887762 1111111111 111111 4556788
Q ss_pred EecCCcEEEEE-ec-CcEEEEeCCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEc
Q 004789 585 FHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 640 (730)
Q Consensus 585 ~spdg~~l~~s-~d-g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~sgs~ 640 (730)
...+|.+.+++ .+ +.|.+|+.. ++.+..+... ...+++++|- |+.+.|++.+.
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEec
Confidence 88889888654 44 389999997 9998888763 4778888886 56666665544
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.027 Score=61.32 Aligned_cols=181 Identities=15% Similarity=0.079 Sum_probs=101.0
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEE-------cCCCCCeEEEEEeCCC
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSL 538 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~spd~ 538 (730)
.|.+|+.. |+.+.++.-..+.+.++.|+.+..|++...||.+++||+. |+....+ .-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 58999875 6677766644488999999886666677899999999986 3331111 1112223333344455
Q ss_pred CEEEEEeCCCcEEEEEcCCCceecceeecccccC----CCCCCCCeEE-EEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 004789 539 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 539 ~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~----h~~~~~~v~~-l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~ 612 (730)
++.-..++.+.+.+-..... ....+...+.. +.. ..... ..++.+....+. ..++.+.+.+-...+.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~--~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWW--PSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred --EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccc--cccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 33334455554443222110 00011101110 000 01111 234444444443 4555666444332211
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
+. ..+++..+++||+|++||.-..+|.+.+...+-.+....+.
T Consensus 213 -i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 213 -ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred -cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 21 25789999999999999999999999999877666665554
No 353
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.0074 Score=59.25 Aligned_cols=232 Identities=14% Similarity=0.046 Sum_probs=136.5
Q ss_pred EEEEe---CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCC--eEEEEEcCCC-eEEEEECC-----CcEEEEecCCC-
Q 004789 451 CFALR---GSHLFSAS--GGKISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK- 516 (730)
Q Consensus 451 ~l~~s---~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~--v~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~- 516 (730)
.++++ ..-++.+- .-...++|..+.+...++...++. .-.-.||||| +|+..-+| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 44555 44455554 234567888877766665433221 2234699999 77665443 58999998865
Q ss_pred ceEEEEcCCCCCeEEEEEeCCCCEEEEEeC------------------CCcEEEEEcCCCceecceeecccccCCCCCCC
Q 004789 517 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 517 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~------------------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
+.+..+..|.-....+.+.+||+.++.+.. .-++.+.|..+++......+. ..-+. -
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp--~~l~~---l 226 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP--ASLRQ---L 226 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc--hhhhh---c
Confidence 566778888878889999999999987642 112444554454433322222 01111 4
Q ss_pred CeEEEEEecCCcEEEEE-ecCc-----EEEEeCCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcC-CeEEE
Q 004789 579 IVNHIQFHPDQIHLLSI-HEGQ-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKS-GHVKV 646 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s-~dg~-----I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~spdg~~l~sgs~d-g~I~i 646 (730)
.|..++..+||+.++.+ ..|. -.+=-...++.+.-+.... ....|-+++.+.+..+++..+-. +...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 68889999999888765 2221 1111122344443332211 14567788888666666655554 55679
Q ss_pred EECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 647 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 647 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
||..+|..+..-... + .. .|+- ...-|+..+.+|.+.++.-
T Consensus 307 ~da~tG~vv~~a~l~--------d--aa--Gva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 307 WDAATGAVVSEAALP--------D--AA--GVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEcCCCcEEeccccc--------c--cc--ccee---ccCceEEecCCceEEeccc
Confidence 999999877654321 1 11 3332 2334555667888887743
No 354
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.73 E-value=4.5e-05 Score=47.11 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhc
Q 004789 14 THLITLIMKFLEEENFKESLQALEQES 40 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Es 40 (730)
+++.++|++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 478999999999999999999999997
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0016 Score=70.66 Aligned_cols=180 Identities=18% Similarity=0.117 Sum_probs=112.3
Q ss_pred CCeeEEEEe--CcEEEEee----C-CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCC--cEEEEecCC
Q 004789 447 DSISCFALR--GSHLFSAS----G-GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS--SILVHCPCT 515 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s----d-g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg--~I~iwd~~~ 515 (730)
..+..-+|+ +..++... . ..+.++++++++...... ..+.-...+|+||| .+++...|| .|+++|+.+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 444555666 44444333 2 469999999887665554 22333467899999 556666777 577778887
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
+.. ..+....+.-+.-.|+|||++++..+. .| .|.++|...... ..+. ..+. .-..-.|+|||+++
T Consensus 272 ~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT--~~~~-----~~~~p~~SpdG~~i 340 (425)
T COG0823 272 KNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLT--FSGG-----GNSNPVWSPDGDKI 340 (425)
T ss_pred Ccc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEee--ccCC-----CCcCccCCCCCCEE
Confidence 763 335433333346679999999887654 34 366667776432 1111 2221 12277899999999
Q ss_pred EE-E-ecCc--EEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 593 LS-I-HEGQ--IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 593 ~~-s-~dg~--I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
+. + .+|. |.+.|+.++...+.+.. .......+|.++|+.+...+..
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence 98 4 3555 77777776665444432 4444566788888877755443
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.67 E-value=0.031 Score=55.85 Aligned_cols=210 Identities=13% Similarity=0.069 Sum_probs=112.6
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 004789 480 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAV 556 (730)
Q Consensus 480 ~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~ 556 (730)
.+.+-...++.++|+|+. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 445556679999999986 7777777888988896 48888877543 3557889998888777766568999999884
Q ss_pred CCcee-cc---eeecc-cccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---Cceeeee-----c-CCCCCC
Q 004789 557 GWKKL-CS---KFLHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQL-----V-PDKMDL 621 (730)
Q Consensus 557 ~~~~~-~~---~~i~~-~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~---~~~~~~~-----~-~~~h~~ 621 (730)
..... .. ..+.. +...+. ..+-.++|+|.+..|++. ...-..+|.+.. ...+... . ......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N---~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGN---KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---S---S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCC---cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 42110 01 11110 111122 468899999987777775 444455555532 1111111 1 111245
Q ss_pred CeEEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcc--cce-eeEEEEEecCCCCEEEEEeCCCcE
Q 004789 622 PITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS--LEL-YPLVIAAHPLEPNRIALGLTNGRV 697 (730)
Q Consensus 622 ~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~--~~v-~~~~v~~sp~~~~~las~s~Dg~I 697 (730)
.+.+++++|. |.+++....+..|.++| .+|+.+..+.... |.+. ..+ .+=+|+|.+ +|++.+++ .-+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~----g~~gl~~~~~QpEGIa~d~-~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR----GFHGLSKDIPQPEGIAFDP-DGNLYIVS-EPNLF 244 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST----TGGG-SS---SEEEEEE-T-T--EEEEE-TTTEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC----cccCcccccCCccEEEECC-CCCEEEEc-CCceE
Confidence 6788999985 56666777788899999 6677776665431 2111 011 133899999 77665554 56655
Q ss_pred EEE
Q 004789 698 HVI 700 (730)
Q Consensus 698 ~iW 700 (730)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.025 Score=61.11 Aligned_cols=202 Identities=17% Similarity=0.128 Sum_probs=140.5
Q ss_pred eEEEEe--CcE-EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEecCCCceEEE
Q 004789 450 SCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAK 521 (730)
Q Consensus 450 ~~l~~s--~~~-l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~---dg~I~iwd~~~~~~~~~ 521 (730)
..++.+ +.. .++.. ++.|.+.|..+.+......... ....++++|++ .+.++.. ++.+.+.|..+++.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 355565 554 44444 6999999988877777665333 45589999999 5555544 68999999999988877
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ec-
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE- 597 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~d- 597 (730)
...-..+ ..++++|+|..++.+. .++.|.+.|..+..............+ ..-..+.++|+|.++.+. .+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccCC
Confidence 5443334 8899999999766555 788999999877432210000001111 244679999999988874 22
Q ss_pred -CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCCceEEEEee
Q 004789 598 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 598 -g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-g~I~iwd~~~~~~~~~~~ 659 (730)
+.+...|..++.....-...... ....+.++|+|.++++.... +.+.+-|..+........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 58999999888776552221213 56778999999999988554 899999999888776654
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.61 E-value=0.0091 Score=67.61 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=112.4
Q ss_pred CCeEEEEEcCCC-eEEEEE------CCC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC---------
Q 004789 486 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--------- 547 (730)
Q Consensus 486 ~~v~~i~~spdg-~l~sgs------~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d--------- 547 (730)
..+.+.+++|+| .++... .|. .|.+++.. +.......+ ...+.-.|+|||..+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 467899999999 554443 233 56666653 333222333 237788999999888776533
Q ss_pred ---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEE---EeCCCCce-e---eeecCC
Q 004789 548 ---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNH-T---SQLVPD 617 (730)
Q Consensus 548 ---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~i---wd~~~~~~-~---~~~~~~ 617 (730)
+.+.+.+++.++. . .... +.|..+.|||||..++...++.|++ -....|.. + ..+..
T Consensus 427 ~~~gql~~~~vd~ge~------~---~~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~- 493 (591)
T PRK13616 427 PATGQLARTPVDASAV------A---SRVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP- 493 (591)
T ss_pred CCCceEEEEeccCchh------h---hccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence 2222223333211 1 0111 5799999999999999865678777 44444431 1 11211
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEE--CCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC
Q 004789 618 KMDLPITYATYSCDGKCIYVSCKSGHVKVFD--TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 618 ~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd--~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg 695 (730)
.-...+.++.|..++.++ ++..++...+|. +.... ...+. .+.....+. +|+=++ ..+...+.+|
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~------~~n~~~~v~--~vaa~~---~~iyv~~~~g 560 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALP------SRNLSAPVV--AVAASP---STVYVTDARA 560 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccC------CCCccCceE--EEecCC---ceEEEEcCCc
Confidence 113446889999999855 555555444554 44222 11111 111122344 566555 2455556676
Q ss_pred cEEEEeCCCCceeeeccCCCCC
Q 004789 696 RVHVIEPLESEVEWGKLPFTDS 717 (730)
Q Consensus 696 ~I~iWd~~~~~~~w~~~~~~~~ 717 (730)
.+.+=.-.+....|..-+....
T Consensus 561 ~~~l~~~~~~~~~W~ev~~l~g 582 (591)
T PRK13616 561 VLQLPNSDSGDQYWREVPGLMG 582 (591)
T ss_pred eEEecCCCCCCCCceECccccC
Confidence 4444433445678988776443
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.044 Score=54.74 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=110.9
Q ss_pred CCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCC-CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCc
Q 004789 444 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 517 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~-~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~ 517 (730)
+-...+..++|+ .+.|++.. .+.|..++. +|+.++.+.-. .+..-.+++..++ ++++--.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 344569999999 45555555 688988886 48888887643 3567789998888 65555568899999884321
Q ss_pred ------eEEEEc-----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---Cceecceeecccc--cCCCCCCCCeE
Q 004789 518 ------TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN 581 (730)
Q Consensus 518 ------~~~~~~-----~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~---~~~~~~~~i~~~~--~~h~~~~~~v~ 581 (730)
....+. .+...+-.++|+|.++.|+.+-......+|.+.. ............. .... ..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence 112221 2345588999999988888887777777776654 1110000000011 1111 4578
Q ss_pred EEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC--C-----CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004789 582 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 582 ~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~v~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
+++++|....|++ + ....|..+| .+|+.+..+.... | -...-.++|.++|+ |+..++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999996555554 6 667799999 4788766554321 1 23577899999985 5555577777766
No 360
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.59 E-value=0.12 Score=54.38 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=112.3
Q ss_pred CcEEEEee--C--CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE
Q 004789 456 GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 530 (730)
Q Consensus 456 ~~~l~s~s--d--g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 530 (730)
|+.|+.++ + ..+.+.|+.+++..+--.+.........++|++ .++-...+..|+-.|+++.+....+......+-
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 66655555 4 478888999988766554332222246667888 655555567899999999877666665566665
Q ss_pred EEEE--eCCCCEEEEEeC----------------------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 531 CLAY--SLSLNVLVSSGA----------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 531 ~l~~--spd~~~l~s~s~----------------------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
...| +.|+..++-.-. ...|.-.|+.+++.. .+ .... ..+..+.|+
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~---~v---~~~~----~wlgH~~fs 196 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK---VV---FEDT----DWLGHVQFS 196 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE---EE---EEES----S-EEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee---EE---EecC----ccccCcccC
Confidence 5555 345666543211 123556677775531 12 1211 467899999
Q ss_pred cCCcEEEE-EecCc-----EEEEeCCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-----CCeEEEEECCCceE
Q 004789 587 PDQIHLLS-IHEGQ-----IDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-----SGHVKVFDTSTLEL 654 (730)
Q Consensus 587 pdg~~l~~-s~dg~-----I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~-----dg~I~iwd~~~~~~ 654 (730)
|....+++ |.+|- -+||-+++ +...+.+........+..=-|+|||..|.--+. +..|.-+|..+++.
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 96666655 75431 24554432 333333332222344555568899987664222 44677788888865
Q ss_pred EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC----------------cEEEEeCCCCce
Q 004789 655 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG----------------RVHVIEPLESEV 707 (730)
Q Consensus 655 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg----------------~I~iWd~~~~~~ 707 (730)
...... . ++..+.-++ |++++|-=+.|. -|+++++..+..
T Consensus 277 ~~~~~~---------p---~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 277 RRLMEM---------P---WCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEEEEE-------------SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred eEEEeC---------C---ceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 433221 1 111344456 777776544432 456777876653
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00081 Score=73.45 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=85.4
Q ss_pred CCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 445 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
+...|.--+++ +++++.|+ .|.+++|+-.++.....-. +-.+.+..+..+++. ++|.|+..|.|.++-+..+..-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44445444444 99999999 7999999988776543322 344556677788888 8999999999999987764221
Q ss_pred -----EEE-cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 004789 520 -----AKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 520 -----~~~-~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~ 557 (730)
... +.|...|++++|++|+..+++|...|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 23789999999999999999999999999988877
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.55 E-value=0.018 Score=60.78 Aligned_cols=173 Identities=18% Similarity=0.161 Sum_probs=101.8
Q ss_pred CEEEEEEcCCceEEEEEcCCC-CCeEEE---EEcCC----C-eEEEEEC----------CCcEEEEecCCC----ceEEE
Q 004789 465 GKISIFSLETFQTLATFANPP-PIATYF---ILLPQ----D-LFAFGFD----------DSSILVHCPCTK----KTKAK 521 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~-~~v~~i---~~spd----g-~l~sgs~----------dg~I~iwd~~~~----~~~~~ 521 (730)
+.|++.|..+.+.+.++.-.. ..+.++ .+..+ . +|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468888888888777665332 233333 33332 4 7776653 288999999884 12222
Q ss_pred E--cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCc-eecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec
Q 004789 522 L--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 597 (730)
Q Consensus 522 ~--~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~-~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d 597 (730)
+ ....++|++++-- ++. |+++. ++.|.+|++...+ ....... ... ..+.++... +.++++| .-
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~----~~~----~~i~sl~~~--~~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFY----DSP----FYITSLSVF--KNYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-----BS----SSEEEEEEE--TTEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhee----cce----EEEEEEecc--ccEEEEEEcc
Confidence 2 2257889998776 444 44443 5899999998854 2111111 111 245555554 5578876 45
Q ss_pred CcEEEEeCCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 598 GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 598 g~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
..+.++.... ...+..+........++++.|-++++.++++..+|.+.++...
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6666654332 3323333322336678899998777899999999999999876
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.55 E-value=0.12 Score=53.01 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=137.3
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
.++.|+.|..+| +.+++... .....++. +...|..+...|+-+.|++-+ |+.+.++++..-........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~---~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~- 74 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD---PSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP- 74 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC---CccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc-
Confidence 578899998888 88888832 22222222 455599999999888776665 49999999876544211000
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEE---Ee--CcEEEEeeCCEEEEEEcCCc-----eEEEEEcCCCCCeEEEE
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFA---LR--GSHLFSASGGKISIFSLETF-----QTLATFANPPPIATYFI 492 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~---~s--~~~l~s~sdg~I~vwd~~t~-----~~~~~~~~~~~~v~~i~ 492 (730)
... .......... .....+..++ -. +..|+++....|.+|..... +..+.+.. ...+.+++
T Consensus 75 -----~~~-~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~ 145 (275)
T PF00780_consen 75 -----LAF-PKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIA 145 (275)
T ss_pred -----ccc-cccccccccc--cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEE
Confidence 000 0000000000 1334455555 11 44566666779998887653 45555543 36778999
Q ss_pred EcCCCeEEEEECCCcEEEEecCCCceEEEEcCCC------------CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce
Q 004789 493 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ------------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 493 ~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------------~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
|.++ .++.|..+ ...+.|+.++.....+.... .++..+. -+++.+|++- |..-.+.|..+ +.
T Consensus 146 ~~~~-~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G-~~ 219 (275)
T PF00780_consen 146 FLGN-KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNG-EP 219 (275)
T ss_pred EeCC-EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCC-Cc
Confidence 9855 66676654 58888999776544332111 1233333 3345566543 33444445544 22
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~ 616 (730)
.....+. .. ....++++. ..+|++-.++.|.||++.+++.++.+..
T Consensus 220 ~r~~~i~--W~------~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 220 SRKSTIQ--WS------SAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CcccEEE--cC------CchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 2222222 11 245566664 4588886667799999999999988864
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.52 E-value=0.035 Score=55.22 Aligned_cols=201 Identities=13% Similarity=0.034 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCC-eEEEEEcCCC-eEEEEECCC--cEEEEecCCCceEEEEcCC-CCCeEEEEEeCCCCEEEEEeCCCcE
Q 004789 476 QTLATFANPPPI-ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQL 550 (730)
Q Consensus 476 ~~~~~~~~~~~~-v~~i~~spdg-~l~sgs~dg--~I~iwd~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~s~dg~I 550 (730)
+.+.+++..... ...+.|..+| ++-+.+.-| .|+.+|+.+++......-. ...--.++...| +.....-.++..
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~ 112 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeE
Confidence 345555533333 3567777788 666666665 7999999999887665432 222334555533 333445578999
Q ss_pred EEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCC---CeEEE
Q 004789 551 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL---PITYA 626 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~---~v~~~ 626 (730)
.+||..+.+........ +.-+.++ .|++.|+.+ ....|+.+|..+.+..+.+....... .++.+
T Consensus 113 f~yd~~tl~~~~~~~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EEEETTTTEEEEEEE-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEEccccceEEEEEecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 99999985544332222 2344565 567777765 56789999998888777665433233 44556
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCC----CC---cccceeeEEEEEecCCCCEEEEEe
Q 004789 627 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GT---ISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 627 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~----gh---~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.|- +|...|=.-....|...|..+|+....+......+. .. ...-.+ ++||.|..+.+++||-
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEET
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEeC
Confidence 664 676666565678899999999999988875544321 10 023345 9999996667777774
No 365
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00065 Score=69.64 Aligned_cols=120 Identities=19% Similarity=0.207 Sum_probs=94.5
Q ss_pred ccchhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch----------HHHHHHHHhCCCHHHHHHHhcccc-cccCCcccc
Q 004789 10 KDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN----------VHRFGEIVMNGEWEKAEKYLSAFT-KLDDSNHSK 78 (730)
Q Consensus 10 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~ 78 (730)
.++.+.+..+|..++..+|....+..|-+|||...+ +.++-+++..|+-.-|++.+..-. .+.+ ..+.
T Consensus 113 ~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~-~~s~ 191 (394)
T KOG2817|consen 113 FDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE-KSSS 191 (394)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc-cccc
Confidence 445566789999999999999999999999999863 889999999999999998885421 1221 1223
Q ss_pred chhhhhhhhhhHHHHhcCChH--HHHHHHHhhcccccccChhHHHHH-HHHhcccc
Q 004789 79 KMFFELRKHKYCEALCRHERT--EADSIFRKDLKVFSVSQNRIDCEL-AELLALKD 131 (730)
Q Consensus 79 ~~~~~i~~q~~lEll~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l-~~ll~~~~ 131 (730)
+.|.+..+.|++++..|... +|+.+.|+.++||...+..+++.| +.|+-+.+
T Consensus 192 -LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~~ 246 (394)
T KOG2817|consen 192 -LEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLRN 246 (394)
T ss_pred -HHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc
Confidence 89999999999999998888 999999999999966555555554 44444443
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.47 E-value=0.04 Score=58.95 Aligned_cols=242 Identities=12% Similarity=0.059 Sum_probs=132.9
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCC--------------CCcEEEEEEecCCCEEEEEeCC
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQT 402 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh--------------~~~V~~v~fspdg~~L~s~s~d 402 (730)
....||||+.+|... ++.|.+++... +...+++..+..+ -+.-.++.|||||++||....|
T Consensus 47 ~~~~sP~g~~~~~v~-~~nly~~~~~~----~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 47 DAKWSPDGKYIAFVR-DNNLYLRDLAT----GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp EEEE-SSSTEEEEEE-TTEEEEESSTT----SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cceeecCCCeeEEEe-cCceEEEECCC----CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 357899999999885 47899988753 3555555433111 1223568899999999988775
Q ss_pred -CcEEEee---cCCCcc----ccc-------cccccceeeEecCCCCeeEeeccc---CCCCCCeeEEEEe--CcEEEEe
Q 004789 403 -ATHKLWK---WQSNKQ----SLE-------EENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSA 462 (730)
Q Consensus 403 -g~I~iWd---~~~~~~----~~~-------~~~~~~~~~i~~~~~~~~~~~~~~---~~h~~~V~~l~~s--~~~l~s~ 462 (730)
..|..+. ...... ... .........+++..+++....... ......+..+.|. ++.|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 4444333 222211 111 111233446788887775332221 1235567889998 5524443
Q ss_pred e---C---CEEEEEEcCCceEEEEEcC-CCCC---eEEEEEc-CCC--eEEEEECCC--cEEEEecCCCceEEEEcCCCC
Q 004789 463 S---G---GKISIFSLETFQTLATFAN-PPPI---ATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 463 s---d---g~I~vwd~~t~~~~~~~~~-~~~~---v~~i~~s-pdg--~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~ 527 (730)
. + -.+.++|..++.+...+.. .... .....+. +++ ++.....|| .|.+++...+. .+.+....-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence 3 2 2577788887765443331 2222 2355554 666 666666777 56667776655 445655566
Q ss_pred CeEE-EEEeCCCCEEE-EEeCC----CcEEEEEcC-CCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 528 RITC-LAYSLSLNVLV-SSGAD----AQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 528 ~V~~-l~~spd~~~l~-s~s~d----g~I~vwd~~-~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
.|+. +.++++++.|+ ++..+ ..+...++. ++.. .+ +.... +.-..+.|||+|++++.
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~---LT~~~----~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KC---LTCED----GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EE---SSTTS----STTEEEEE-TTSSEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Ee---ccCCC----CCceEEEECCCCCEEEE
Confidence 6755 67788877665 44442 245566666 4332 11 22221 12258999999999987
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.15 Score=52.44 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=123.2
Q ss_pred CcEEEEee-CCEEEEEEcC-CceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE----------
Q 004789 456 GSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------- 522 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~-t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~---------- 522 (730)
++.|+.|. +| +.+++.. ........ +...|..+...++- .+++-+ |+.++++++..-.....-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 78888899 66 9999983 33333332 22238899998877 444443 599999998765333210
Q ss_pred ----cCCCCCeEEEE--EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe
Q 004789 523 ----KGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 596 (730)
Q Consensus 523 ----~~h~~~V~~l~--~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~ 596 (730)
......+..++ -...+...++....+.|.+|............+.++... ..+.+++|. ++.++++.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence 01223344444 112333333444456888888766311100122212222 468899998 66788887
Q ss_pred cCcEEEEeCCCCceeeeecCCCC----------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEE--Eeeccccc
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYA 664 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h----------~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~~ 664 (730)
.+...+.|+.++.....+..... ..++..+.. +++.+|++. |..-.+.|. .|+... .+..
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W---- 227 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW---- 227 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEc----
Confidence 77899999987765444322111 122333333 445666653 333333444 333222 2221
Q ss_pred CCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 665 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 665 ~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
..... .+++.. .+|+..+. +.|-||++.+++..-.
T Consensus 228 -----~~~p~--~~~~~~---pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 228 -----SSAPQ--SVAYSS---PYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred -----CCchh--EEEEEC---CEEEEECC-CEEEEEECcCCcEEEE
Confidence 11122 566643 46666655 5599999999976433
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.15 Score=54.98 Aligned_cols=229 Identities=19% Similarity=0.165 Sum_probs=140.2
Q ss_pred EEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEE-E
Q 004789 467 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-S 543 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s 543 (730)
+.+++..+......+..+. ....+...+++ .+.... ....+...+............-......++.++++..++ +
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5556655555555444333 44477888888 333332 222566666552222222221214456778888887544 4
Q ss_pred EeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE----ecCcEEEEeCCCCceeeeecCCCC
Q 004789 544 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKM 619 (730)
Q Consensus 544 ~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s----~dg~I~iwd~~~~~~~~~~~~~~h 619 (730)
...++.|.+.|..+... +.....+ .....++++|+++.++++ .++.+.+.|..+++.+.....+
T Consensus 92 ~~~~~~v~vid~~~~~~-----~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-- 159 (381)
T COG3391 92 TGDSNTVSVIDTATNTV-----LGSIPVG-----LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-- 159 (381)
T ss_pred cCCCCeEEEEcCcccce-----eeEeeec-----cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC--
Confidence 44568999999777332 2222223 235689999999888874 2588999999999888875542
Q ss_pred CCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE-eCC--C
Q 004789 620 DLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTN--G 695 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~-s~D--g 695 (730)
..+ ..++++|+|..++... .++.|.+.|..+..... -........+ .. +..++++| ++..+... ..+ +
T Consensus 160 ~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~--~~---P~~i~v~~-~g~~~yV~~~~~~~~ 231 (381)
T COG3391 160 NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG--TG---PAGIAVDP-DGNRVYVANDGSGSN 231 (381)
T ss_pred CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccC--CC---CceEEECC-CCCEEEEEeccCCCc
Confidence 234 8999999999777665 67999999977766543 1100001111 11 23788899 67754433 333 6
Q ss_pred cEEEEeCCCCceeeeccCCCC
Q 004789 696 RVHVIEPLESEVEWGKLPFTD 716 (730)
Q Consensus 696 ~I~iWd~~~~~~~w~~~~~~~ 716 (730)
.+...|..++...+...+...
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~ 252 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGS 252 (381)
T ss_pred eEEEEeCCCceEEEecccccc
Confidence 899999988877665444433
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.36 E-value=0.017 Score=60.97 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=108.0
Q ss_pred CcEEEEecCCCceEEEEcC-CCCCeEEEE---EeCC----CCEEEEEeC----------CCcEEEEEcCCC-c-eeccee
Q 004789 506 SSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS----LNVLVSSGA----------DAQLCVWDAVGW-K-KLCSKF 565 (730)
Q Consensus 506 g~I~iwd~~~~~~~~~~~~-h~~~V~~l~---~spd----~~~l~s~s~----------dg~I~vwd~~~~-~-~~~~~~ 565 (730)
+.|++.|..+.+.+..+.- ....+++++ +..+ ..++++|+. .|.|.++++... . ......
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3688889888877766543 223444443 3322 457777653 288999999883 1 001111
Q ss_pred ecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
+. ..... ++|++++-- +.+|+++.++.|.+|++...+ ....-... ....+.++... +.++++|..-..+
T Consensus 82 i~--~~~~~---g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IH--STEVK---GPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EE--EEEES---S-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EE--EEeec---CcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCE
Confidence 11 11112 688888876 345888888999999998777 44333221 13455555544 6699999888888
Q ss_pred EEEECCC-ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 645 KVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 645 ~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.++..+. +..+..+... ..+.+++++.+-+ +++.++.++.+|.|.++....
T Consensus 152 ~~~~~~~~~~~l~~va~d--------~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARD--------YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTTE-EEEEEEE--------SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEccCCEEEEEEec--------CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 8875443 2223333211 2234455888886 457999999999999999863
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.35 E-value=0.0045 Score=71.04 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=95.7
Q ss_pred CCEEEEEEcCCceEEEEEcCCCCC-eEEEEEcC-----CC-eEEEEECCCcEEEEecCCCc--eEEE-Ec--CCCCCeEE
Q 004789 464 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC 531 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~~~-v~~i~~sp-----dg-~l~sgs~dg~I~iwd~~~~~--~~~~-~~--~h~~~V~~ 531 (730)
...|+-.|+++|+.+..+..+... |..++-.. +. .-+.|-.++.+..||++-.. ++.. .+ .......|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 578999999999999999987654 65554321 12 56788888999999988642 2211 11 13455678
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 605 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~ 605 (730)
++-+.+| +||+|+.+|.||+||--+ . .-.+.+.+-. .+|..|..+.||+++++..+..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g-~-----~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLG-K-----RAKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccc-h-----hhhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 8877777 788999999999999433 1 1222333333 6899999999999999988888888885
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.13 Score=56.06 Aligned_cols=168 Identities=12% Similarity=0.091 Sum_probs=91.1
Q ss_pred CCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEE-------cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC
Q 004789 447 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 447 ~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~-------~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~ 516 (730)
+.|.++.|+ .+.|++.. ||.+++||+. |+....+ ......+.+..+..+| .++++ ++.+++.+-...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccc
Confidence 789999999 66666666 9999999986 3331111 1112223333444466 44443 444554432221
Q ss_pred c-eEEEEc---C-----CCC-CeEE-EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEE
Q 004789 517 K-TKAKLK---G-----HQN-RITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 585 (730)
Q Consensus 517 ~-~~~~~~---~-----h~~-~V~~-l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~ 585 (730)
. ..+.+. + +.. .... ..++.+....+....++.+.+.+-... ..+ ... +++..+++
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-----~~i----~~~----~~i~~iav 224 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-----KQI----DSD----GPIIKIAV 224 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----ccc----cCC----CCeEEEEE
Confidence 1 111111 1 000 0001 224445555555555566664444331 011 111 57999999
Q ss_pred ecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC
Q 004789 586 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 586 spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd 631 (730)
||+|+++|. ..+|.+.+.+..-.+.+..+... .......+.|.-+
T Consensus 225 Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 225 SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGN 270 (410)
T ss_pred CCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECC
Confidence 999999998 67899999887655565555543 2345566666544
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.30 E-value=0.19 Score=55.12 Aligned_cols=241 Identities=12% Similarity=0.068 Sum_probs=123.7
Q ss_pred cEEEEEEecCCCEEEEE-eCCC----cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 383 RVVRLIYSHSGDFLVAL-TQTA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~-s~dg----~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
.+...++||||+++|.+ +..| .++++|+++++. +...+ ....-..+.|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---------------------l~d~i---~~~~~~~~~W~~d 180 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---------------------LPDGI---ENPKFSSVSWSDD 180 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---------------------EEEEE---EEEESEEEEECTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---------------------cCCcc---cccccceEEEeCC
Confidence 34467899999988866 3333 477777766543 22111 01111237777
Q ss_pred CcEEEEee-C-----------CEEEEEEcCCceE--EEEEcCCCCC--eEEEEEcCCC-eEEE-EECC---CcEEEEecC
Q 004789 456 GSHLFSAS-G-----------GKISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFAF-GFDD---SSILVHCPC 514 (730)
Q Consensus 456 ~~~l~s~s-d-----------g~I~vwd~~t~~~--~~~~~~~~~~--v~~i~~spdg-~l~s-gs~d---g~I~iwd~~ 514 (730)
++.|+... + ..|+.|.+.+... ...+...... ...+..++|+ +++. .... ..+++.|+.
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 45554443 2 1378888877542 2444443332 5688899999 5443 3322 358888988
Q ss_pred CC----ceEEEEcCCCCCe-EEEEEeCCCCEEEEEeC---CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 515 TK----KTKAKLKGHQNRI-TCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 515 ~~----~~~~~~~~h~~~V-~~l~~spd~~~l~s~s~---dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
.+ .....+......+ ..+... .+.+++.... .+.|.-.++.......... ....+. ..+.-..+.
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~---~l~~~~---~~~~l~~~~ 333 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWT---VLIPED---EDVSLEDVS 333 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE---EEE--S---SSEEEEEEE
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccccee---EEcCCC---CceeEEEEE
Confidence 74 2333333333334 334333 4444443322 3567777887744211111 111222 222333333
Q ss_pred cCCcEEEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCceEE
Q 004789 587 PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELR 655 (730)
Q Consensus 587 pdg~~l~~-s-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~----dg~I~iwd~~~~~~~ 655 (730)
..+.+|+. . .++ .|+++|+..+.....+.... .+.|..+...+++..+..... -++++.||+.+++..
T Consensus 334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 334 LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44556665 3 443 49999997344444544432 455666665566654443222 278999999998754
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.29 E-value=0.079 Score=56.06 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=111.3
Q ss_pred CcceeeeecCCCCCCCcEEEEEEe-----------cCCCEEEEEeC-CCcEEEeecCCCccccccccccceeeEecCCCC
Q 004789 367 PSECRTLLLPDNSFGGRVVRLIYS-----------HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 434 (730)
Q Consensus 367 ~~~~~~~~l~~~gh~~~V~~v~fs-----------pdg~~L~s~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~ 434 (730)
.+.+.++.++. -.++....-|+ .+.++|+..+- .+.|.|.|+.+... .|++..+-..
T Consensus 52 gqVIhrl~mp~--~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr---------~P~l~KvIe~ 120 (461)
T PF05694_consen 52 GQVIHRLPMPN--RGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPR---------KPRLHKVIEP 120 (461)
T ss_dssp TSEEEEEE-SS--S---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TT---------S-EEEEEE-H
T ss_pred ccEEEEEeCCC--CCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCC---------CCceEeeeCH
Confidence 34445555543 23455666665 24678888874 68999999875533 1122211111
Q ss_pred eeEeecccCCCCCCeeEEEEe-CcEEEEee-------CCEEEEEEcCCceEEEEEcCCCC---CeEEEEEcCCC-eEEEE
Q 004789 435 LVMTNDIAADPKDSISCFALR-GSHLFSAS-------GGKISIFSLETFQTLATFANPPP---IATYFILLPQD-LFAFG 502 (730)
Q Consensus 435 ~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-------dg~I~vwd~~t~~~~~~~~~~~~---~v~~i~~spdg-~l~sg 502 (730)
..+... .+-..+=+.-+.- |+.++++- -|.+.++|-++.+.......... --..+-|.|.. .+++.
T Consensus 121 ~ev~~k--~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSS 198 (461)
T PF05694_consen 121 EEVFEK--TGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISS 198 (461)
T ss_dssp HHHHHH--H-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-
T ss_pred HHHHhh--cCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEe
Confidence 000000 0000000111111 66666652 25789999999888887764332 33677778876 66665
Q ss_pred EC--------------------CCcEEEEecCCCceEEEEcCCC--CCeEEEEEeC--CCCEEEE-EeCCCcEEEEEc-C
Q 004789 503 FD--------------------DSSILVHCPCTKKTKAKLKGHQ--NRITCLAYSL--SLNVLVS-SGADAQLCVWDA-V 556 (730)
Q Consensus 503 s~--------------------dg~I~iwd~~~~~~~~~~~~h~--~~V~~l~~sp--d~~~l~s-~s~dg~I~vwd~-~ 556 (730)
.. ..++.+||+.+.+.++++.--. ..+..|.|.. +..+=++ +....+|..|-- .
T Consensus 199 eWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~ 278 (461)
T PF05694_consen 199 EWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD 278 (461)
T ss_dssp B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E
T ss_pred ccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC
Confidence 42 2589999999999999986432 2355666644 4444333 334455555533 3
Q ss_pred CCceecceeecccccC----C-----------CCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCC---ceeeeecC
Q 004789 557 GWKKLCSKFLHSFQTG----L-----------VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL---NHTSQLVP 616 (730)
Q Consensus 557 ~~~~~~~~~i~~~~~~----h-----------~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~---~~~~~~~~ 616 (730)
.++-...+.+. +... - .+ .-|+.|.+|.|.++|.++ ..|.|+.||+... +.+.++..
T Consensus 279 ~g~W~a~kVi~-ip~~~v~~~~lp~ml~~~~~~P--~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 279 DGEWAAEKVID-IPAKKVEGWILPEMLKPFGAVP--PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp TTEEEEEEEEE-E--EE--SS---GGGGGG-EE--------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-
T ss_pred CCCeeeeEEEE-CCCcccCcccccccccccccCC--CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE
Confidence 33322222222 1110 0 01 457899999999999995 7899999999763 23333222
Q ss_pred CCC--------------CCCeEEEEEecCCCEEEEEE
Q 004789 617 DKM--------------DLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 617 ~~h--------------~~~v~~~~~spdg~~l~sgs 639 (730)
++. .+...-+..|-||+.|+..+
T Consensus 356 GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 356 GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 110 12335677888998888664
No 374
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.25 E-value=0.12 Score=55.78 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=112.2
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEecCCCc-------------------------------------------eEEEE
Q 004789 487 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------------------------------------------TKAKL 522 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~-------------------------------------------~~~~~ 522 (730)
.|+++.|.++. .|++|...|.|.+|.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888999888 99999999988887543221 11122
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecc--cccCCCCCCCCeEEEEEec-----CC---cEE
Q 004789 523 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHP-----DQ---IHL 592 (730)
Q Consensus 523 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~--~~~~h~~~~~~v~~l~~sp-----dg---~~l 592 (730)
....++|++++.+.- -+++.|..+|.+.|.|++.........+.. ...... ..|+++.|+- |+ -.+
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~---~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS---SYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-------EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccc---cCeeEEEEEEEecCCCcccceEE
Confidence 234578999998744 489999999999999999866554444442 111111 5688888873 33 345
Q ss_pred EEE-ecCcEEEEeCC--C-CceeeeecC--CCCCCCeEEEE-EecC-C-------------------CEEEEEEcCCeEE
Q 004789 593 LSI-HEGQIDVYEAP--T-LNHTSQLVP--DKMDLPITYAT-YSCD-G-------------------KCIYVSCKSGHVK 645 (730)
Q Consensus 593 ~~s-~dg~I~iwd~~--~-~~~~~~~~~--~~h~~~v~~~~-~spd-g-------------------~~l~sgs~dg~I~ 645 (730)
++| ..|.+.+|.+- . +.....+.. ..+...|..+. |+.+ | .-++....+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 555 66889888764 1 211111111 12356666554 3221 0 1233444578899
Q ss_pred EEECCCceEEEEeecccccCCCCcccceeeEEEEEe----cCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 646 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH----PLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 646 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s----p~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
++...+.+...+... ..+-+..+++- ...+..|++-..+|.|+++.+..-+..
T Consensus 239 v~~~~~~k~~~K~~~----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE-TT---EEEEE-S----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEeCCCCcccceeec----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 999988776554431 11111123331 113567888889999999999877654
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.12 Score=53.59 Aligned_cols=189 Identities=19% Similarity=0.126 Sum_probs=108.0
Q ss_pred cEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc----C-CCCC
Q 004789 457 SHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK----G-HQNR 528 (730)
Q Consensus 457 ~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~----~-h~~~ 528 (730)
..|+-+. .+.|.-|+..+++... +. +...+.++..-..+ .|+++.. .+.+++.+++..+..+. + ....
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCC
Confidence 3344444 6888888887664332 22 22233444443344 5555443 46677776665533332 1 2245
Q ss_pred eEEEEEeCCCCEEEEEeC-----------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--
Q 004789 529 ITCLAYSLSLNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 595 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~-----------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-- 595 (730)
.+.+...|+|.+.++... -|.++.+|... . .+. ...++- ..-+.++||||++.++.+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~-----~~~-l~~~~~---~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-G-----VVR-LLDDDL---TIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-C-----EEE-eecCcE---EecCceEECCCCCEEEEEeC
Confidence 678889999987665333 13344444322 1 111 222211 244689999999988885
Q ss_pred ecCcEEEEeCCC--Cce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEeec
Q 004789 596 HEGQIDVYEAPT--LNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINL 660 (730)
Q Consensus 596 ~dg~I~iwd~~~--~~~---~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-~I~iwd~~~~~~~~~~~~ 660 (730)
..+.|+-|++.. +.. ...+......+..-.++...+|.+.+++..+| .|.+|+.+ |+++..+..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 457888887752 111 11111111245666778888888876555554 99999998 888888764
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.20 E-value=0.017 Score=66.45 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=96.7
Q ss_pred EEEEECCCcEEEEecCCCceEEEEcCCCCC-eEEEEEeC-----CCCEEEEEeCCCcEEEEEcCCCceecceeecccc--
Q 004789 499 FAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSL-----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-- 570 (730)
Q Consensus 499 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~sp-----d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~-- 570 (730)
|........|+-.|+..|+.+..+..|... |.+++-.. +....+.|-.+..+..||.+-... ..+....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~~~~k~ 573 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVDSQSKQ 573 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceeeccccc
Confidence 333345678999999999999999887644 55543221 123455677789999999986321 1111000
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.... ...+|++-+.+|..++.+.+|.||+||- .++.-++..+ +-+.+|..+..+.||+||++.+ +..+.+++.
T Consensus 574 Y~~~---~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSK---NNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccC---CCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 0111 4578888888887666689999999995 4444444433 3489999999999999998886 566777774
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.024 Score=60.31 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=97.7
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC---eE-----EEEECCCcEEEEecCCCc--eEEEEcCC--
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF-----AFGFDDSSILVHCPCTKK--TKAKLKGH-- 525 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg---~l-----~sgs~dg~I~iwd~~~~~--~~~~~~~h-- 525 (730)
|.++. ...++-.|++.|+.+..+..+.. |+-+.+.|+. .+ +.|-.|+.|+-||++-.. .+..-++|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34444 57899999999999999987766 7777788876 22 466778899999987432 22222333
Q ss_pred --CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEE
Q 004789 526 --QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 603 (730)
Q Consensus 526 --~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iw 603 (730)
.....|++-..+| ++|+||.+|.|++||--. . .-.+.+.+-. .+|..|..+.+|+++++..+..+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~-~-----~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG-R-----RAKTALPGLG---DAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhh-h-----hhhhcccccC---CceeeEEeeccCcEEEEecccEEEEE
Confidence 2345566666666 788999999999999733 1 1222333433 68999999999999999888888777
Q ss_pred eCC
Q 004789 604 EAP 606 (730)
Q Consensus 604 d~~ 606 (730)
+..
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.10 E-value=0.89 Score=52.53 Aligned_cols=316 Identities=11% Similarity=0.044 Sum_probs=164.1
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
+.+|.|.++..+.+--... +........+.+..-...|--.+|-.|+.+|+++..||.+.-+.++...
T Consensus 549 ~~~aVG~Ws~~~~~l~~~p--d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t---------- 616 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLP--DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT---------- 616 (1096)
T ss_pred eEEEEEeecceEEEEEECC--CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc----------
Confidence 3688888776665544431 0111111112222235667777788888999999999998766443322
Q ss_pred eeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEeeCCEEEEEEcCCceEEEE-EcCCCCCeE-EEEEcCCC--
Q 004789 425 ESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLAT-FANPPPIAT-YFILLPQD-- 497 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~sdg~I~vwd~~t~~~~~~-~~~~~~~v~-~i~~spdg-- 497 (730)
|.+.......--..++.=-.|+ +..+++++|.-..+|..+ ++.+.+ +.. ..+. -+.|+.++
T Consensus 617 ---------g~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~--kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 617 ---------GQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSL--KEVNHMCPFNSDAYP 684 (1096)
T ss_pred ---------ceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccch--HHhhhhcccccccCC
Confidence 2211100000023344444455 666777777666666543 332221 110 0111 12233333
Q ss_pred -eEEEEECCCcEEEEecCCCc--eEEEEcCCCCCeEEEEEeCCCCEEEEEeC-----------C---CcEEEEEcCCCce
Q 004789 498 -LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGA-----------D---AQLCVWDAVGWKK 560 (730)
Q Consensus 498 -~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~spd~~~l~s~s~-----------d---g~I~vwd~~~~~~ 560 (730)
.++++.. +.+++.-+..-+ .++++. -......+++.+....+.+.+. . ..++++|-++.+.
T Consensus 685 d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 4444443 455555443321 223333 2344566667664433333321 1 1377888877544
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecC-CcEEEEEe-----------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 628 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~s~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 628 (730)
.....+...... -.|.++.|..| +.++++|. .|+|.+|.+..+..++......-.+.+.++..
T Consensus 763 l~~hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~ 837 (1096)
T KOG1897|consen 763 LSSHEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE 837 (1096)
T ss_pred Eeecccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh
Confidence 333333211111 24556668887 77777641 26788888877444444422222455555543
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 629 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 629 spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
-+|++||+- +..|++|+..+.+.+..-. ++ ..++. ++...- .+..++.|.--++|.+-.....
T Consensus 838 -fngkllA~I--n~~vrLye~t~~~eLr~e~-------~~-~~~~~--aL~l~v-~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 838 -FNGKLLAGI--NQSVRLYEWTTERELRIEC-------NI-SNPII--ALDLQV-KGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred -hCCeEEEec--CcEEEEEEccccceehhhh-------cc-cCCeE--EEEEEe-cCcEEEEeeccceEEEEEEecc
Confidence 367776654 6789999998885443322 23 33355 444444 6788999988787776555433
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.04 E-value=0.018 Score=48.91 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=64.0
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 384 VVRLIYSH---SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 384 V~~v~fsp---dg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
|+++++.. || +.|++||.|..|++|+-+.-. +. . .-.+.|.+++-. +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--------------~E---------i---~e~~~v~~L~~~~~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--------------AE---------I---TETDKVTSLCSLGGGR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--------------EE---------E---ecccceEEEEEcCCCE
Confidence 56666665 33 479999999999999743211 11 1 245678888888 777
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE---cCCC--eEEEEECCCcEE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL---LPQD--LFAFGFDDSSIL 509 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~---spdg--~l~sgs~dg~I~ 509 (730)
++.+- +|+|-+|+-. ..+...+.... ++++++ ..|| .|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 88888 9999999853 33333332222 444443 4455 899999998774
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.021 Score=60.79 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=100.2
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE-------EEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~-------l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
.+.++.....++-.|++.|+.+..++-+.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... ..+. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~-~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLA-VV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceee-ee
Confidence 556666777899999999999999987766 777788886531 23466788999999985211 0111 12
Q ss_pred cCCCC-CCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 571 TGLVP-ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 571 ~~h~~-~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.+|.- ......|++-..+|..++.+.+|.|++||- .+..-++..+ +-+.+|..+..+.||++|++.+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22210 003456777777886666689999999997 5555544443 3488999999999999998776 566666664
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0049 Score=66.77 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc
Q 004789 486 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 486 ~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
..+.-+.|+|.- .+|++..+|.|.++.+. .+.+.++.-+...++ +++|.|||+.|++|-.||+|++.|+.++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 456789999999 99999999999999988 777778876777777 999999999999999999999999999754443
Q ss_pred eeecccccCCCCCCCCeEEEEEec
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHP 587 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~sp 587 (730)
.... .. ..|.++-|++
T Consensus 100 ~~~s-----~e---~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFS-----VE---TDISKGIWDR 115 (665)
T ss_pred cccc-----cc---cchheeeccc
Confidence 2211 11 4677888864
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.84 E-value=0.0031 Score=41.65 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.3
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 554 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd 554 (730)
+++...+..|...|.++.|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.27 Score=48.69 Aligned_cols=213 Identities=15% Similarity=0.044 Sum_probs=121.2
Q ss_pred EEEEEcCCC--eEEEEECCC-cEEEEecCCCceEEEEcCCCCC--eEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 004789 489 TYFILLPQD--LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNR--ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 558 (730)
Q Consensus 489 ~~i~~spdg--~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~--V~~l~~spd~~~l~s~s~d-----g~I~vwd~~~~ 558 (730)
..++++|.. -++.+-.-| ...++|..+.+...++...++. .-.=.|+|||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 367888877 556665555 4567898887766555332221 1123599999999875433 67999999863
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecC-------------------cEEEEeCCCCceeeeecCC--
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG-------------------QIDVYEAPTLNHTSQLVPD-- 617 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg-------------------~I~iwd~~~~~~~~~~~~~-- 617 (730)
- ..+. -...|. -.-..+.+.+||+.+++...| ++.+.|..+|..+.+....
T Consensus 151 f----qrvg-E~~t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 151 F----QRVG-EFSTHG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred c----ceec-ccccCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence 2 2222 122332 234579999999999873221 2455665666666544332
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCe-----EEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 618 KMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 618 ~h~~~v~~~~~spdg~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+.-.+..++..+||..++.+-..|. -.+=....++.+..+....-...+- .+ |+-+++.+-.++-..+|+=
T Consensus 223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~-an--YigsiA~n~~~glV~lTSP 299 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF-AN--YIGSIAANRRDGLVALTSP 299 (366)
T ss_pred hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH-Hh--hhhheeecccCCeEEEecC
Confidence 34567888888888877665544332 1111223344433333211000000 11 1236777764444444444
Q ss_pred CCCcEEEEeCCCCceeeecc
Q 004789 693 TNGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 693 ~Dg~I~iWd~~~~~~~w~~~ 712 (730)
..+...+||..+|.......
T Consensus 300 ~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred CCCeEEEEEcCCCcEEeccc
Confidence 55677899999998765443
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.78 E-value=1.2 Score=48.91 Aligned_cols=239 Identities=15% Similarity=0.117 Sum_probs=124.4
Q ss_pred EEEEe--CcEEEEee--CC----EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e-EEEEECC----------CcEEE
Q 004789 451 CFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD----------SSILV 510 (730)
Q Consensus 451 ~l~~s--~~~l~s~s--dg----~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~-l~sgs~d----------g~I~i 510 (730)
.+.++ |+++|.+- +| .|+++|+++|+.+...-.. .....+.|.+++ . +++...+ ..|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 45566 88777653 33 6999999999776532111 112249999998 4 4444332 24788
Q ss_pred EecCCCce--EEEEcCCCCC--eEEEEEeCCCCEEEEEeC---C-CcEEEEEcCCCc--eecceeecccccCCCCCCCCe
Q 004789 511 HCPCTKKT--KAKLKGHQNR--ITCLAYSLSLNVLVSSGA---D-AQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIV 580 (730)
Q Consensus 511 wd~~~~~~--~~~~~~h~~~--V~~l~~spd~~~l~s~s~---d-g~I~vwd~~~~~--~~~~~~i~~~~~~h~~~~~~v 580 (730)
|.+.+... ...+...... ...+..++|+++++..+. + ..+.+.|+..+. ......+. ... ..+
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~---~~~----~~~ 279 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS---PRE----DGV 279 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE---ESS----SS-
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe---CCC----Cce
Confidence 88877632 2444443322 668889999999775433 2 347788887631 11112222 221 123
Q ss_pred EEEEEecCCcEEEEE----ecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--eEEEEECCC
Q 004789 581 NHIQFHPDQIHLLSI----HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVKVFDTST 651 (730)
Q Consensus 581 ~~l~~spdg~~l~~s----~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg--~I~iwd~~~ 651 (730)
....-+..+.+++.+ ..+.|...++.+... ...+..+.....+..+... .+.+++....++ .|+++++..
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCC
Confidence 333323344444443 345688888877652 2233322112234444443 233444555554 588999984
Q ss_pred ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe---CCCcEEEEeCCCCce
Q 004789 652 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL---TNGRVHVIEPLESEV 707 (730)
Q Consensus 652 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s---~Dg~I~iWd~~~~~~ 707 (730)
+.....+... + .+.|. .+...+....++++.+ .-++|..||+.+++.
T Consensus 359 ~~~~~~~~~p-----~--~g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 359 GKESREIPLP-----E--AGSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEESS-----S--SSEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CcEEeeecCC-----c--ceEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444444321 1 23344 4554453333444443 236789999998875
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.69 E-value=0.099 Score=59.36 Aligned_cols=184 Identities=9% Similarity=-0.010 Sum_probs=100.0
Q ss_pred CCeeEEEEe--CcEEEEee-------C--CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---------
Q 004789 447 DSISCFALR--GSHLFSAS-------G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 505 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s-------d--g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d--------- 505 (730)
..+...+++ |+.++... | ..|.+++.. +.. ..+.. ....+.-.|+||| .+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 356677777 66655443 3 356666652 333 33322 2237889999998 66665432
Q ss_pred ---CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEE---EEcCCCceecceeecccccCCCCCCCC
Q 004789 506 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 579 (730)
Q Consensus 506 ---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~v---wd~~~~~~~~~~~i~~~~~~h~~~~~~ 579 (730)
+.+.+.++..+.... ...+.|..+.|+|||..++... ++.|.+ -....++.....+.. +..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence 233333444433322 2346799999999999988765 577777 444444321112211 222222 34
Q ss_pred eEEEEEecCCcEEEEEec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 580 VNHIQFHPDQIHLLSIHE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 580 v~~l~~spdg~~l~~s~d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
+.++.|.+++..++...+ ..++..++. |.....+.......++..++-+++ -++....+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 678999999986644433 335555553 332222222222556666666652 45555556643
No 386
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.69 E-value=1.2 Score=47.94 Aligned_cols=83 Identities=10% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-----------------
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----------------- 588 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd----------------- 588 (730)
...+.+++.+|++++.++...-|.|.++|+.++. .+. +.+|... ..+.-+.....
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-----vvr-mWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGI-----VVR-MWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-----hhh-hhccCcc--ceEEEEEeecccccccccccccCCCCcc
Confidence 3457789999999988888778999999999842 233 4454431 11111111111
Q ss_pred CcEEEE-E-ecCcEEEEeCCCCceeeeecC
Q 004789 589 QIHLLS-I-HEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 589 g~~l~~-s-~dg~I~iwd~~~~~~~~~~~~ 616 (730)
..+|+. . .-|.|.||++++|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 123444 4 778999999999988877754
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.68 E-value=0.34 Score=46.58 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCeEEEEECC----------CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEE-EeCCCcEEEE
Q 004789 485 PPIATYFILLPQDLFAFGFDD----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVW 553 (730)
Q Consensus 485 ~~~v~~i~~spdg~l~sgs~d----------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s-~s~dg~I~vw 553 (730)
....+.-..+|+|.++.|... |.++.|-.. + .+..+...-+--+.++|+.+.+.+.. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345667778899933444322 233333322 1 11122212233357889888776654 4556677667
Q ss_pred E--cCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEe-
Q 004789 554 D--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS- 629 (730)
Q Consensus 554 d--~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s- 629 (730)
| ..+|.......+..+........-..-.+++.-+|...++. ..++|...|..+|+.+.++... ...++++||.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence 7 66655433333322222100000112245556678777776 7788999999999999998864 7889999996
Q ss_pred cCCCEEEEEE
Q 004789 630 CDGKCIYVSC 639 (730)
Q Consensus 630 pdg~~l~sgs 639 (730)
++-..+++.+
T Consensus 264 kn~d~~yvT~ 273 (310)
T KOG4499|consen 264 KNLDILYVTT 273 (310)
T ss_pred CCccEEEEEe
Confidence 4445555443
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.68 E-value=0.97 Score=46.63 Aligned_cols=279 Identities=13% Similarity=0.054 Sum_probs=125.9
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
-...+.+|.|..+..-.++| ..+.| +....+.. -|.......- ....-...++.|. ...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~------------tW~~~~~~~~-----~~~~~~l~~I~f~~~~g 74 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGK------------TWQPVSLDLD-----NPFDYHLNSISFDGNEG 74 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTS------------S-EE-----S----------EEEEEEEETTEE
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCc------------cccccccCCC-----ccceeeEEEEEecCCce
Confidence 35688999999655555554 45543 33333221 1332211000 0012235677777 444
Q ss_pred EEEeeCCEEEEEEcCCceEEEEEc---CCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEE-EcCCCCCeEEEEE
Q 004789 459 LFSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAY 534 (730)
Q Consensus 459 l~s~sdg~I~vwd~~t~~~~~~~~---~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~ 534 (730)
+++|..+. .+.-.+.|+.-..+. .-.+....+....++....++..|.|+.= .+.|+.-+. ...-.+.+..+..
T Consensus 75 ~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r 152 (302)
T PF14870_consen 75 WIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITR 152 (302)
T ss_dssp EEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE
T ss_pred EEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEE
Confidence 55554553 333333444333322 12233334444444422223444554432 233433222 3345577889999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCceeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ 613 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~-~~~~~~~~ 613 (730)
++||+++++++......-||-.... ..+.. ..-. ..|.+|.|.|++...+++..|.|+.=+. ...+....
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~---r~~~---~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTT---WQPHN---RNSS---RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SS---S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred CCCCcEEEEECcccEEEEecCCCcc---ceEEc---cCcc---ceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence 9999998888766666678765411 11222 1111 5799999999998888888888888772 22222111
Q ss_pred --ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 614 --LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 614 --~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
.........+..++|.+++...++|+ .|.+ +...+.|+-=+..... ..-....+ .|.|.+ ..+-+|.
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~-----~~~~~n~~--~i~f~~-~~~gf~l- 292 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG-----ENVPSNLY--RIVFVN-PDKGFVL- 292 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG-----TTSSS-----EEEEEE-TTEEEEE-
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccc-----cCCCCceE--EEEEcC-CCceEEE-
Confidence 11111244589999998877777664 5654 4455555533332211 01122355 788876 3444555
Q ss_pred eCCCcEEEE
Q 004789 692 LTNGRVHVI 700 (730)
Q Consensus 692 s~Dg~I~iW 700 (730)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 478887655
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.65 E-value=0.12 Score=58.62 Aligned_cols=195 Identities=13% Similarity=0.052 Sum_probs=98.4
Q ss_pred CC-eEEEEECC------CcEEEEecCCCceEEEEcC---CCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCce
Q 004789 496 QD-LFAFGFDD------SSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKK 560 (730)
Q Consensus 496 dg-~l~sgs~d------g~I~iwd~~~~~~~~~~~~---h~~~V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~ 560 (730)
++ .+++||.+ ..+..||+.++.- ..+.. ..... +++ .-+|+..+.|+.++ .+..||..+.+-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 55 66677753 3578889877642 12211 11111 222 23567777777654 478899887432
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec-----------------------CcEEEEeCCCCceeeeecC
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d-----------------------g~I~iwd~~~~~~~~~~~~ 616 (730)
..+..+..... ....++ -+|+..+.| .+ ..+..||..+.+-...-..
T Consensus 380 ---~~~~~mp~~r~----~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m 450 (557)
T PHA02713 380 ---KMLPDMPIALS----SYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450 (557)
T ss_pred ---EECCCCCcccc----cccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence 12221111111 111222 245555554 32 2477888876654221111
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcC------CeEEEEECCC-ce--EEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 617 DKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 617 ~~h~~~v~~~~~spdg~~l~sgs~d------g~I~iwd~~~-~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
. .......+..-+|+..+.|+.+ ..+..||..+ .+ .+..+.. . ..... .++. +++.
T Consensus 451 -~-~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~------~--r~~~~--~~~~---~~~i 515 (557)
T PHA02713 451 -W-TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES------R--LSALH--TILH---DNTI 515 (557)
T ss_pred -C-cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc------c--cccce--eEEE---CCEE
Confidence 0 1111112223456766677654 2467899886 33 2222211 0 11011 2222 6789
Q ss_pred EEEEeCCC--cEEEEeCCCCceeeeccCCCCCcc
Q 004789 688 IALGLTNG--RVHVIEPLESEVEWGKLPFTDSRE 719 (730)
Q Consensus 688 las~s~Dg--~I~iWd~~~~~~~w~~~~~~~~~~ 719 (730)
.++||.|| ++-.||+.+. +|....++-...
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~--~W~~~~~~~~~~ 547 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTY--EWNHICHQHSNS 547 (557)
T ss_pred EEEeeecceeehhhcCcccc--cccchhhhcCCc
Confidence 99999998 6777777554 788887765544
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.63 E-value=0.12 Score=44.05 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=67.1
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 004789 529 ITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 604 (730)
Q Consensus 529 V~~l~~sp---d~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd 604 (730)
|+++++.. || +.|++||.|..|++|+-.. .+.++... +.|++++-...+++.++-.+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~-----~~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET-----DKVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc-----cceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 56676654 33 5799999999999998765 22223333 568888888776655556999999998
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEec-C--C-CEEEEEEcCCeEE
Q 004789 605 APTLNHTSQLVPDKMDLPITYATYSC-D--G-KCIYVSCKSGHVK 645 (730)
Q Consensus 605 ~~~~~~~~~~~~~~h~~~v~~~~~sp-d--g-~~l~sgs~dg~I~ 645 (730)
-. ..+...+. ...++++++.. + | .-|++|-.+|.|-
T Consensus 70 ~~--~RlWRiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 RS--QRLWRIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred Cc--ceeeeecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 62 23333332 45577776653 2 2 3688888888874
No 391
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0058 Score=40.28 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004789 475 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 512 (730)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd 512 (730)
+++...+..|...|.++.|++++ .+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566777888999999999999 999999999999996
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.62 E-value=0.89 Score=45.41 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=110.5
Q ss_pred CeeEEEE-e-CcEEEEee-C--CEEEEEEcCCceEEEEEcCCCC-CeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEE
Q 004789 448 SISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPPP-IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 521 (730)
Q Consensus 448 ~V~~l~~-s-~~~l~s~s-d--g~I~vwd~~t~~~~~~~~~~~~-~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~ 521 (730)
-...+.| . |.++-+.+ - ..|+.+|+.+|+......-... ---.++...|....-.-.++...+||..+.+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 3457888 4 56666666 4 4899999999998776653332 22345555443344446788999999999988888
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 600 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I 600 (730)
+. ..+.=+.++ .|+..|+.......|+++|..+.+......+. ..+.. ...++-+.+- +|...|-- ....|
T Consensus 126 ~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 126 FP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTSSEE
T ss_pred Ee-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 86 345556666 45667777666778999999886543322222 22211 1345667776 45444434 66778
Q ss_pred EEEeCCCCceeeeecCC-------------CCCCCeEEEEEecCCCEEEEEE
Q 004789 601 DVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 601 ~iwd~~~~~~~~~~~~~-------------~h~~~v~~~~~spdg~~l~sgs 639 (730)
...|..+|+....+... ....-.+.+++.|..+.++..+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88899999887654211 0145688999998766555444
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.048 Score=62.87 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=76.3
Q ss_pred CeeEEEEeCcEEEEee-CCEEEEEEcCCceE-EEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC
Q 004789 448 SISCFALRGSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 524 (730)
Q Consensus 448 ~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~-~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 524 (730)
.+.+.+.-+..++.|+ .|.|-..|+...-. ...=..-.++|++++|+.+| .++.|-.+|.|.+||+..++.++.+..
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 3344444477788888 68888888765311 11112335789999999999 999999999999999999999998877
Q ss_pred CCCCeEEEE---EeCCCCEEEEEeCCCcEEEEEc
Q 004789 525 HQNRITCLA---YSLSLNVLVSSGADAQLCVWDA 555 (730)
Q Consensus 525 h~~~V~~l~---~spd~~~l~s~s~dg~I~vwd~ 555 (730)
|..+.+.+- +..++..++++...|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 766666553 4445667888777776 5554
No 394
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.012 Score=63.95 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeE-EEEEcCCC-eEEEEECCCcEEEEecCCCceEE
Q 004789 446 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~-~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
...|.-+.|+ -..+|.+. +|.|.+..++ .+.+.++..|...++ +++|.||| .||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3456778888 77899998 8999999988 888889987777777 99999999 99999999999999999998776
Q ss_pred EEc-CCCCCeEEEEEeC
Q 004789 521 KLK-GHQNRITCLAYSL 536 (730)
Q Consensus 521 ~~~-~h~~~V~~l~~sp 536 (730)
... .-...|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2445677777763
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.47 E-value=0.43 Score=54.24 Aligned_cols=231 Identities=15% Similarity=0.133 Sum_probs=121.1
Q ss_pred CcEEEEee-C------CEEEEEEcCCceEEEEEcCCCC-CeEEEEEcCCC-eEEEEECC-C-----cEEEEecCCCceEE
Q 004789 456 GSHLFSAS-G------GKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGFDD-S-----SILVHCPCTKKTKA 520 (730)
Q Consensus 456 ~~~l~s~s-d------g~I~vwd~~t~~~~~~~~~~~~-~v~~i~~spdg-~l~sgs~d-g-----~I~iwd~~~~~~~~ 520 (730)
+..++.|+ + ..+..||..++.......-... .-.+++.. +| ..++||.| | ++..||..+++=..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 44455555 3 4688899888754433322222 22344444 45 78888888 3 68889988775221
Q ss_pred --EEcCCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe-cCCcEE
Q 004789 521 --KLKGHQNRITCLAYSLSLNVLVSSGADAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHL 592 (730)
Q Consensus 521 --~~~~h~~~V~~l~~spd~~~l~s~s~dg~-----I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s-pdg~~l 592 (730)
.+....... ++ ..-+|...|+|+.||. +-.||..+.+- ..+..+.. .....+.. -+|+..
T Consensus 364 ~a~M~~~R~~~-~v-~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W---~~va~m~~-------~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 364 VAPMNTKRSDF-GV-AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW---TPVAPMLT-------RRSGHGVAVLGGKLY 431 (571)
T ss_pred cCCccCccccc-ee-EEECCEEEEEeccccccccccEEEecCCCCcc---cccCCCCc-------ceeeeEEEEECCEEE
Confidence 111111111 11 1226778888988864 77788877431 11110111 12222222 246555
Q ss_pred EE-Eec------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEEEeec
Q 004789 593 LS-IHE------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINL 660 (730)
Q Consensus 593 ~~-s~d------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~ 660 (730)
++ |.+ .++..||..+......-......... .+ -.-++...+.|+.|+ +|..||..+.+-...-..
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 55 433 34788998876643222111101111 12 234677788888776 377788877653332110
Q ss_pred ccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCceeeeccCC
Q 004789 661 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 661 ~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg-----~I~iWd~~~~~~~w~~~~~ 714 (730)
......+. .+++ ++...++|+.|| +|-.||+.+. +|....+
T Consensus 510 ------~~~rs~~g--~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d--~W~~~~~ 555 (571)
T KOG4441|consen 510 ------TSPRSAVG--VVVL---GGKLYAVGGFDGNNNLNTVECYDPETD--TWTEVTE 555 (571)
T ss_pred ------cccccccc--EEEE---CCEEEEEecccCccccceeEEcCCCCC--ceeeCCC
Confidence 11011122 2222 578889999886 4777777654 5776554
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.45 E-value=0.55 Score=54.91 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=98.5
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCe-------------EEEEEcC---CCeEEEEEC----------CCcE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI 508 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v-------------~~i~~sp---dg~l~sgs~----------dg~I 508 (730)
+..++.++ |+.+.-.|.+||+.+..+... +.| ..+.-.| ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44676777 999999999999998776421 111 0111111 335566643 6889
Q ss_pred EEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec
Q 004789 509 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 587 (730)
Q Consensus 509 ~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg-~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp 587 (730)
+-+|.++|+.+-.+..-.-..... -+.+.....++... ...-+|.+.+. +. +..+.. +..+..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~gl------vy-~ptGn~-------~pd~~g 402 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGL------VY-LPMGNQ-------TPDQWG 402 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCe------EE-EeCCCc-------cccccC
Confidence 999999999987775211001111 11333222222111 23344444421 11 111111 011101
Q ss_pred CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC-------CeEEEEEec-CCC---EEEEEEcCCeEEEEECCCceEE
Q 004789 588 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL-------PITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 588 dg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~-------~v~~~~~sp-dg~---~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
..+.... -..++|.-.|.++|+..-.+...+|.. ...=+.+.. +|+ .++.++.+|.++++|..+|+.+
T Consensus 403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 403 GDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 1110001 134567778888888877665533311 111122322 563 7999999999999999999987
Q ss_pred EEe
Q 004789 656 CQI 658 (730)
Q Consensus 656 ~~~ 658 (730)
...
T Consensus 483 ~~~ 485 (764)
T TIGR03074 483 VPV 485 (764)
T ss_pred eec
Confidence 654
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.37 E-value=0.57 Score=54.83 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=116.8
Q ss_pred CeEEEEECCCcEEEEecCCCceEEEEcCCCCC--------eEEEEEeC----------------CCCEEEEEeCCCcEEE
Q 004789 497 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR--------ITCLAYSL----------------SLNVLVSSGADAQLCV 552 (730)
Q Consensus 497 g~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~sp----------------d~~~l~s~s~dg~I~v 552 (730)
+.++.++.++.|+-.|..+|+.+-.+...... ...+++.. .+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 36777788889999999999888776532110 11233321 2347888889999999
Q ss_pred EEcCCCceeccee------ecccccCCCCCCCCeEEEEEec---CCcEEEEEe----------cCcEEEEeCCCCceeee
Q 004789 553 WDAVGWKKLCSKF------LHSFQTGLVPETTIVNHIQFHP---DQIHLLSIH----------EGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 553 wd~~~~~~~~~~~------i~~~~~~h~~~~~~v~~l~~sp---dg~~l~~s~----------dg~I~iwd~~~~~~~~~ 613 (730)
.|.++|+...... +..-..... ..-..+.-.| ++..++.+. +|.|+-+|.++|+.+-.
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~---~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTP---PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCC---CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999986543211 000000000 0000111112 343333321 47899999999998877
Q ss_pred ecCCCC---------------CCCe-EEEEEecCCCEEEEEE------------------cCCeEEEEECCCceEEEEee
Q 004789 614 LVPDKM---------------DLPI-TYATYSCDGKCIYVSC------------------KSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 614 ~~~~~h---------------~~~v-~~~~~spdg~~l~sgs------------------~dg~I~iwd~~~~~~~~~~~ 659 (730)
+..... ...+ ..+++.++...++.+. ..+.|.-.|.+||+..-.+.
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 643100 0011 2344555555555432 13567777888898877665
Q ss_pred cccccCCCCccccee-------eEEEEEecCCCC---EEEEEeCCCcEEEEeCCCCceeeec
Q 004789 660 LTAYAQPGTISLELY-------PLVIAAHPLEPN---RIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 660 ~~~~~~~gh~~~~v~-------~~~v~~sp~~~~---~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
.. ||+ ++ .+-+.....+++ .++.++.+|.+.+.|-.+|+..|..
T Consensus 432 ~~------~hD--~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 432 TV------HHD--LWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cc------CCc--cccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 32 222 11 111222211342 7899999999999999999999874
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.34 E-value=0.0062 Score=58.12 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=58.7
Q ss_pred EEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEE-EEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC
Q 004789 541 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI-QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK 618 (730)
Q Consensus 541 l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l-~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~ 618 (730)
+...+.||.|+-++++..+....... .+.+. ..-.-+..+++ +.+|.|++|...............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~------------~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER------------FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh------------hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc
Confidence 44456788888888876322111111 11111 11122455666 589999999875221111111111
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 619 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 619 h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
.......+.-..++.+.++++.||.|+.|++..++.+...
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 1222222222345668999999999999999988877665
No 399
>PHA02713 hypothetical protein; Provisional
Probab=96.24 E-value=0.41 Score=54.51 Aligned_cols=185 Identities=13% Similarity=0.105 Sum_probs=91.0
Q ss_pred CcEEEEee-C------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEecCCCceE--E
Q 004789 456 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTK--A 520 (730)
Q Consensus 456 ~~~l~s~s-d------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg-----~I~iwd~~~~~~~--~ 520 (730)
+..++.|+ + ..+..||..+......-.-....-......-+| ..+.||.++ ++..||..+++=. .
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 66666666 4 347889988765422111111111112222356 667777654 4888998865321 1
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeCCC-----------------------cEEEEEcCCCceecceeecccccCCCCCC
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET 577 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~dg-----------------------~I~vwd~~~~~~~~~~~i~~~~~~h~~~~ 577 (730)
.+.........++ -+|...+.|+.++ .+..||..+.+- ..+..+...+.
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W---~~v~~m~~~r~--- 455 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW---ETLPNFWTGTI--- 455 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE---eecCCCCcccc---
Confidence 1111111111222 2577777777542 477788876432 12221212211
Q ss_pred CCeEEEEEecCCcEEEEE-ec------CcEEEEeCCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--eEEEE
Q 004789 578 TIVNHIQFHPDQIHLLSI-HE------GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVKVF 647 (730)
Q Consensus 578 ~~v~~l~~spdg~~l~~s-~d------g~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg--~I~iw 647 (730)
. .+++ .-+|+..+.| .+ ..+..||..+ .+-...-......... +++ .-+|+..++|+.|| .+..|
T Consensus 456 -~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~-~~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 456 -R-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTI-LHDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred -c-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeE-EECCEEEEEeeecceeehhhc
Confidence 1 1222 2245554444 32 2367899886 4432211111111122 222 23678888998888 67778
Q ss_pred ECCCce
Q 004789 648 DTSTLE 653 (730)
Q Consensus 648 d~~~~~ 653 (730)
|..+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 877765
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.21 E-value=1.3 Score=42.82 Aligned_cols=203 Identities=19% Similarity=0.210 Sum_probs=109.9
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEE-EEcCCCCCeEEEEE-cCCC--eEEEEE-CCCcEEEEecC--CCceEEEEc---C
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFIL-LPQD--LFAFGF-DDSSILVHCPC--TKKTKAKLK---G 524 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~-~~~~~~~~v~~i~~-spdg--~l~sgs-~dg~I~iwd~~--~~~~~~~~~---~ 524 (730)
+.++.+-- .|.|.-||..+.+..+ ++.+.. +.++.+ -.++ .++++. ..-.|.=||.. .-...+++. .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 33333333 6778889988765443 333322 222332 2232 333333 22234447632 223333321 1
Q ss_pred --CCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 525 --HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 525 --h~~~V~~l~~spd~~~l~s~s~----------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
...+.+.-..+|+|++.+ |.. .|.++.|-... .+..+. +.- +.-..++|+.+.+.+
T Consensus 105 d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~-~~v---~IsNgl~Wd~d~K~f 172 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-------QVELIW-NCV---GISNGLAWDSDAKKF 172 (310)
T ss_pred hHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCC-------Cceeee-hhc---cCCccccccccCcEE
Confidence 235566777899999843 432 23344444332 111011 111 233468899888877
Q ss_pred EE--EecCcEEEEe--CCCCce-----eeeecCCC--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecc
Q 004789 593 LS--IHEGQIDVYE--APTLNH-----TSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 593 ~~--s~dg~I~iwd--~~~~~~-----~~~~~~~~--h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 661 (730)
.. +.+-.|.-|| ..+|.. +..++... .....-.+++..+|.+.++.-..|+|.-.|..+|+.+..+...
T Consensus 173 Y~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 173 YYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred EEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 76 4666787777 444432 22222100 0122234566678888888888899999999999999888753
Q ss_pred cccCCCCcccceeeEEEEEec
Q 004789 662 AYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~sp 682 (730)
...|. +++|--
T Consensus 253 --------t~qit--sccFgG 263 (310)
T KOG4499|consen 253 --------TPQIT--SCCFGG 263 (310)
T ss_pred --------CCceE--EEEecC
Confidence 34466 888864
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.13 E-value=2 Score=44.32 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=81.7
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce
Q 004789 482 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 482 ~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
..-.+.+..+.-++|| ++++++......-||.-...-...-..-..+|.++.|.|++...+.+ ..|.|++=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445678889999999 77777655555678754322222222246789999999998776644 788888877222111
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~sgs 639 (730)
.-.+.+...... . ..+..++|.+++...+++..|.+. .....|+.-+.... ..-...++.+.|..+.+-++.|
T Consensus 220 ~w~~~~~~~~~~-~---~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 220 TWSEPIIPIKTN-G---YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCcccC-c---eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 011111101111 1 348899999998888888777554 34445554433332 1225568899998765555555
Q ss_pred cCCeEEEE
Q 004789 640 KSGHVKVF 647 (730)
Q Consensus 640 ~dg~I~iw 647 (730)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 68877554
No 402
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=96.06 E-value=0.0038 Score=56.12 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=73.6
Q ss_pred hhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccccccccccCCCC---ChhhHHHHHHHHH
Q 004789 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTN---ATSSRAKLIDSLK 156 (730)
Q Consensus 80 ~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~---~~~~r~~l~~~l~ 156 (730)
++|+++-+.||||+..|..++|..|+++.-.-+...+.+++++|+.+.+..++.+++....+.+ .-...+.....|.
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999998766666668999999999998888777666554422 3333445666666
Q ss_pred HhhhccccccccccCCCCchhHHHHHHHhh
Q 004789 157 LLVKENRILQDKLIFPCVNNSALSSLIKLI 186 (730)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~rL~~ll~q~ 186 (730)
.++.. -+.+-+..+|++.
T Consensus 109 ~~L~~------------~~~~~~~~il~~~ 126 (133)
T cd08044 109 RFLES------------WGGSLLLKILNEH 126 (133)
T ss_pred HHHHH------------CCcHHHHHHHHhc
Confidence 66666 4566788888873
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.98 Score=45.30 Aligned_cols=169 Identities=8% Similarity=0.079 Sum_probs=108.2
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 600 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I 600 (730)
+.+....+.++.|+|+.+.|++......-.|+=...|+.....++. .. .....|.+..+|+++++. .++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~-------~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GF-------SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-cc-------CChhHeEEecCCEEEEEehhcceE
Confidence 3455556999999999999998887777666655566655555554 11 234478888888888885 78888
Q ss_pred EEEeCCCCceeee-------ecCCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc---
Q 004789 601 DVYEAPTLNHTSQ-------LVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI--- 669 (730)
Q Consensus 601 ~iwd~~~~~~~~~-------~~~~~h-~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~--- 669 (730)
.++.+.....+.. +....+ +...-.++|+|....|+.+-+-.=+.||.+..+..- +..+. ..++.
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~--~~~~~~~~ 228 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHA--SLDPTADR 228 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--ccccc--ccCccccc
Confidence 8887765422211 111112 667889999999998988888877777776533211 11000 00111
Q ss_pred ---ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 670 ---SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 670 ---~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
-..|. ++.|++..+..++-+.+++.+.-.|...
T Consensus 229 ~~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 229 DLFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceEeeccc--cceecCCCCcEEEEecCCceEEEEecCC
Confidence 11233 7788886777788777777777666643
No 404
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=95.97 E-value=0.0035 Score=57.09 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=69.3
Q ss_pred hhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccccccccccCCC---CChhhHHHHHHHHH
Q 004789 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYT---NATSSRAKLIDSLK 156 (730)
Q Consensus 80 ~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~---~~~~~r~~l~~~l~ 156 (730)
++|+|+-|.||+|+..+..++|..|+.+...-+...+.+++++|..+....++.+++....+. -....-...+..|.
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 899999999999999999999999999977777677888888888776665555444333221 13333455667777
Q ss_pred HhhhccccccccccCCCCchhHHHHHHHh
Q 004789 157 LLVKENRILQDKLIFPCVNNSALSSLIKL 185 (730)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~rL~~ll~q 185 (730)
.++..+.. .-.+-|..+|++
T Consensus 120 ~fL~~~~~---------~g~~~ll~iin~ 139 (142)
T PF04494_consen 120 QFLQENEN---------SGGSVLLRIINQ 139 (142)
T ss_dssp HHHHHTTC---------HTHHHHHHHHHH
T ss_pred HHHHhCCc---------chHHHHHHHHHH
Confidence 77777555 445588888887
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.031 Score=64.35 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=72.9
Q ss_pred CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCC
Q 004789 589 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 667 (730)
Q Consensus 589 g~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g 667 (730)
+..++.| +.|.+-..|.... .-.-.....-.++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..+ |
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 4456665 6677888887542 2111222223789999999999999999999999999999999988888754 4
Q ss_pred CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 668 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 668 h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+....| +.+.|.. ++..+.++..-|+ +|++.
T Consensus 173 ap~t~v--i~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGV--IFVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceE--EEEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 433223 3666666 4556777776666 66654
No 406
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.79 E-value=1.3 Score=50.41 Aligned_cols=193 Identities=15% Similarity=0.083 Sum_probs=99.6
Q ss_pred eeEEEEe-CcEEEEee-C------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEecC
Q 004789 449 ISCFALR-GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPC 514 (730)
Q Consensus 449 V~~l~~s-~~~l~s~s-d------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg-----~I~iwd~~ 514 (730)
-.+++.. |...++|+ | .++..||..+++....-.-.......-...-+| ..++||.|| +|-.||..
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 3455555 77777887 7 368889988876443221111111111122356 888999887 57888877
Q ss_pred CCceEEEEcCCCCCeEEEE-EeCCCCEEEEEeCCC------cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec
Q 004789 515 TKKTKAKLKGHQNRITCLA-YSLSLNVLVSSGADA------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 587 (730)
Q Consensus 515 ~~~~~~~~~~h~~~V~~l~-~spd~~~l~s~s~dg------~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp 587 (730)
+.+--. ...........+ ..-+|...++|+.++ ++..||..+.+-....+.. .... -..++.-
T Consensus 405 ~~~W~~-va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---~~R~-----~~g~a~~- 474 (571)
T KOG4441|consen 405 TNKWTP-VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---TRRS-----GFGVAVL- 474 (571)
T ss_pred CCcccc-cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---cccc-----cceEEEE-
Confidence 653211 111111222221 223677777887554 5778888875432222222 2211 1123332
Q ss_pred CCcEEEE-EecC-----cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCce
Q 004789 588 DQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE 653 (730)
Q Consensus 588 dg~~l~~-s~dg-----~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-----~I~iwd~~~~~ 653 (730)
++...++ |.|+ +|..||..+.+....-........+. ++ .-+++..++|+.|| +|..||..+.+
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-VV-VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-EE-EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 4455555 4554 37889988766543321111111111 12 23567777787774 56667666554
No 407
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.73 E-value=1.3 Score=43.79 Aligned_cols=204 Identities=11% Similarity=0.016 Sum_probs=132.7
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
-..++-.||| .-+++...+.|--.|..+|+....--+....-..|...|||..-++-+.. .|.-.|-++.+. ...
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t~f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---TRF 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---EEe
Confidence 4567888999 88888888899999999998876665666677788899999877764433 566667666432 222
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~i 646 (730)
. +...|.. +......|.+.|..-+++..|.---.|-. ...+..+... ....-+.||..|||..-++.-.++.|-.
T Consensus 140 ~-lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa-~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 140 P-LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPA-RNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred e-cccccCC--CcccceeeCCCccEEEeeccccceecCcc-cCceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence 2 2333433 56788999999999888654433333332 2234445443 3666788999999999888888888888
Q ss_pred EECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 004789 647 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 647 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
.|..++... ++... .+-+.+ .+ .+--+| -+..-+|-...+.+.-+|+.... |..
T Consensus 215 idp~~~~ae-v~p~P----~~~~~g-sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s--W~e 268 (353)
T COG4257 215 IDPFAGHAE-VVPQP----NALKAG-SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIE 268 (353)
T ss_pred cccccCCcc-eecCC----Cccccc-cc--ccccCc-cCcEEEeccCCceeeEeCccccc--cee
Confidence 887777432 22211 121111 12 222334 56677776677888888886654 554
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.67 E-value=4 Score=44.10 Aligned_cols=82 Identities=11% Similarity=-0.060 Sum_probs=52.8
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC--------------CC
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL--------------EP 685 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--------------~~ 685 (730)
...+.+++.+|++++.++...=|.|.++|+.++..+..++ |..+..+.-+.+.-... ..
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-------GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-------GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-------cCccceEEEEEeecccccccccccccCCCCcce
Confidence 3457789999999988887656999999999998877776 43332211100100000 01
Q ss_pred C-EEEEEeCCCcEEEEeCCCCcee
Q 004789 686 N-RIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 686 ~-~las~s~Dg~I~iWd~~~~~~~ 708 (730)
. +++-+-.-|.|-||.+..|...
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEE
Confidence 1 2334556799999999998764
No 409
>PRK13684 Ycf48-like protein; Provisional
Probab=95.57 E-value=3.9 Score=43.28 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=87.0
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 604 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~v-wd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd 604 (730)
.+.+.++.+.|++.+++++. .|.+.. +|-.. + ....+. .+.. ..++++.+.++++.++++..|.+++=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg-~--tW~~~~---~~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQ-T--AWTPHQ---RNSS---RRLQSMGFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCC-C--eEEEee---CCCc---ccceeeeEcCCCCEEEEecCCEEEEcc
Confidence 45788999999887666554 555443 22221 1 011111 1111 578999999999988888778765433
Q ss_pred CCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 605 APTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 605 ~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
...+..-.....+ .....+..+.+.+++..+++| .+|.|. ...+.|+.-....... +- ....+ .+.|..
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~----~~-~~~~~--~~~~~~ 312 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE----EV-PSNFY--KIVFLD 312 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC----CC-CcceE--EEEEeC
Confidence 3344332222111 113457889999988766555 577664 3445444222221100 11 12344 677765
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 004789 683 LEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~ 703 (730)
+++.++ .+..|.|.-|+-.
T Consensus 313 -~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 313 -PEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred -CCceEE-ECCCceEEEecCC
Confidence 455555 5578998877653
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.42 E-value=3.4 Score=41.72 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=86.9
Q ss_pred CeEEEEEcCCC-eEEEEE---CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCCcee
Q 004789 487 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 561 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd-~~~~~~~ 561 (730)
.+.+.++++++ .++... ....++++... ....... ....+....|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 67899999999 555544 23356665543 3222221 223677889999987777666666666664 2332211
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCC---CC--cee-eeecC-CCCCCCeEEEEEec
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP---TL--NHT-SQLVP-DKMDLPITYATYSC 630 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s---~dg~I~iwd~~---~~--~~~-~~~~~-~~h~~~v~~~~~sp 630 (730)
...+. .... . +.|..+.+||||..++. . .++.|.+--+. .+ ..+ ..... ......+..+.|.+
T Consensus 102 -~~~v~-~~~~-~---~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 -PVEVD-WPGL-R---GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred -eEEec-cccc-C---CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11122 1111 1 26999999999999987 3 25667766543 22 011 00110 01256889999999
Q ss_pred CCCEEEEEEcCCe
Q 004789 631 DGKCIYVSCKSGH 643 (730)
Q Consensus 631 dg~~l~sgs~dg~ 643 (730)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9988777665543
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.41 E-value=0.04 Score=39.21 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=31.1
Q ss_pred cceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
..|. .++|+| ...+||.++.||.|.++.+ +++..|.
T Consensus 12 ~~v~--~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 12 SRVS--CMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CcEE--EEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 3466 999999 7899999999999999999 7776663
No 412
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.41 E-value=5 Score=43.46 Aligned_cols=278 Identities=14% Similarity=0.079 Sum_probs=148.7
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-------CcEEEEeeCC
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 465 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-------~~~l~s~sdg 465 (730)
...+++||..|.++||+....... +. ..++.. .-..+|..+..- ...||+-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~--------------~~-~lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQ--------------PE-DLLLET----QLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCC--------------Cc-cEEEEE----ecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 357999999999999987544321 11 011111 234556555543 2345555566
Q ss_pred EEEEEEcCC--ce-------EEEEEcCCC--CCeEEEEEcC----CC--eEEEEECCCcEEEEecCCCceEEEEcCCCCC
Q 004789 466 KISIFSLET--FQ-------TLATFANPP--PIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 466 ~I~vwd~~t--~~-------~~~~~~~~~--~~v~~i~~sp----dg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
.+.+|.+.. |. .+..+..|. .....+++-| .| .+++-+.||.+.+++-+.-...+.+.+ ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 777777621 11 111222221 2222333322 22 788999999999999665444444443 222
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCc---e---------------ecceeecccccCCCCCCCCeEEEEE---ec
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWK---K---------------LCSKFLHSFQTGLVPETTIVNHIQF---HP 587 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~---~---------------~~~~~i~~~~~~h~~~~~~v~~l~~---sp 587 (730)
...+.|.+....+++++.+..+.-|....-. . ....+--++.-| ..+..+.. +.
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSS 251 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCC
Confidence 3456788888889999988888888653200 0 000000011112 23334333 32
Q ss_pred CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEE-Ee----cCC---CEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 588 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT-YS----CDG---KCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 588 dg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~-~s----pdg---~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
....+++-...++.+.+- +|......+. .....+++ |. .++ ..++.++.++.+.||.=. +++....
T Consensus 252 ~~~~IvvLger~Lf~l~~-~G~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~ 325 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKD-NGSLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQ 325 (418)
T ss_pred CCceEEEEecceEEEEcC-CCeEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecC
Confidence 334455545566777776 5655444433 22222222 21 122 248888899999999643 3332222
Q ss_pred cccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 660 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 660 ~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
. . ..+|.. .++.-+.-...|++-+++|.+.+-=+-+......
T Consensus 326 l------~--~~PVal-~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 326 L------P--HVPVAL-SVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred C------C--CCCEEE-EecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 1 1 223332 3333332467899999999999988877654444
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.33 E-value=3 Score=44.56 Aligned_cols=95 Identities=17% Similarity=0.065 Sum_probs=51.9
Q ss_pred CCEEEEEEcCCceEEEEEcCCCC--CeEEEEEcC--CC--eEEEEECCCcEEEEec-CCCc----eEEEEcC-----C--
Q 004789 464 GGKISIFSLETFQTLATFANPPP--IATYFILLP--QD--LFAFGFDDSSILVHCP-CTKK----TKAKLKG-----H-- 525 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~~--~v~~i~~sp--dg--~l~sgs~dg~I~iwd~-~~~~----~~~~~~~-----h-- 525 (730)
..++.+||+.+.+.++++.-... ....+.|.. +. -++.+.-.++|..|-- ..++ .+-.+.. -
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 46899999999999999985433 344666654 44 3444444556666543 3331 1111211 0
Q ss_pred ----------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCC
Q 004789 526 ----------QNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGW 558 (730)
Q Consensus 526 ----------~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~~ 558 (730)
..-|+.|..|.|.++|...+ .+|.|+.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 24578999999999988765 5899999999873
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.32 E-value=3.8 Score=47.67 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=48.8
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEecC---------CCce--E-EEE--------cCCCCCeEEEEEeCC---CCEE
Q 004789 486 PIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKT--K-AKL--------KGHQNRITCLAYSLS---LNVL 541 (730)
Q Consensus 486 ~~v~~i~~spdg-~l~sgs~dg~I~iwd~~---------~~~~--~-~~~--------~~h~~~V~~l~~spd---~~~l 541 (730)
-.|..+.++|+| .++..|..|.+.+.=.+ .|+. . +++ ..+...|..+.|+|. +.+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 367899999999 78777776543332111 1111 1 111 124467889999996 5788
Q ss_pred EEEeCCCcEEEEEcCC
Q 004789 542 VSSGADAQLCVWDAVG 557 (730)
Q Consensus 542 ~s~s~dg~I~vwd~~~ 557 (730)
++-+.|+++++||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8889999999999975
No 415
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.24 E-value=2.3 Score=45.70 Aligned_cols=203 Identities=13% Similarity=0.091 Sum_probs=111.8
Q ss_pred CCeEEEEECCCcEEEEecCCCceEEEEcCC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 496 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 496 dg~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
+|.++++..+|.|.-.|..++..+.....- ...+.+-.+..+|+ ++.++.++.++.+|.++++......... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~- 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S- 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C-
Confidence 446777788888888888888765433221 12233333333665 7778889999999998776554444331 0
Q ss_pred CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEecCCCEEEEEEc--CCeEEEEECC
Q 004789 574 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDTS 650 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~sgs~--dg~I~iwd~~ 650 (730)
. .+..-..-.++..+..+.++.+...|..++..+-.+.... -...+...... ....++.+.. ++.+.-.|..
T Consensus 143 ~----~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 P----YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred e----EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEcc
Confidence 0 1222233334433333467888888887777765543211 01111111111 2334555555 6678888888
Q ss_pred CceEEEEeecccccCCCCccc----ceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 651 TLELRCQINLTAYAQPGTISL----ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 651 ~~~~~~~~~~~~~~~~gh~~~----~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
+|............ +.... .+..-.+. . +.-+..++.+|.+...+..+++..|....+
T Consensus 218 ~G~~~w~~~~~~~~--~~~~~~~~~~~~~~~v~-v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTI--GRTAISTTPAVDGGPVY-V---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeeccc--CcccccccccccCceEE-E---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 88876653211111 11100 01100111 1 123466777888999999999999998775
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.19 E-value=0.57 Score=54.36 Aligned_cols=91 Identities=13% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECC----------Cce--EEEE-ee-cccccCCCCcccceeeEEEEEecC--
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTS----------TLE--LRCQ-IN-LTAYAQPGTISLELYPLVIAAHPL-- 683 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~----------~~~--~~~~-~~-~~~~~~~gh~~~~v~~~~v~~sp~-- 683 (730)
...|..+.++|+|++|+..|..|.+ |-.+. .|+ ..+. +. ...+...+ ....|. .+.|||.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~-~~~~i~--qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSN-SSLEIK--QVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCC-CCceEE--EEEEcCCCC
Confidence 4568889999999999988876644 33332 111 1111 11 11111111 133444 9999994
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 684 EPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 684 ~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
++..|+.-+.|+++|+||+......|...+.
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~ 190 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLSL 190 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEEc
Confidence 2478999999999999999887766666553
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.16 E-value=0.063 Score=51.46 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=66.0
Q ss_pred CcEEEEee-CCEEEEEEcCCc-eEEEEEcCCCCCeEEEE-EcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCC-CCeE
Q 004789 456 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI-LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 530 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~-~~~~~~~~~~~~v~~i~-~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~ 530 (730)
+..+++|+ +|.|.+|+..-. .....+..-...|.++. -..++ +.++++.||.|+.|++.-++.+.....|. ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 66778888 999999988622 11111222223333333 33444 88999999999999999888887777676 4555
Q ss_pred EEEEeCCCCEEEEE--eCCCcEEEEEcCC
Q 004789 531 CLAYSLSLNVLVSS--GADAQLCVWDAVG 557 (730)
Q Consensus 531 ~l~~spd~~~l~s~--s~dg~I~vwd~~~ 557 (730)
.......++.++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555566665 6666677776654
No 418
>PHA03098 kelch-like protein; Provisional
Probab=94.95 E-value=1.8 Score=49.17 Aligned_cols=185 Identities=10% Similarity=-0.008 Sum_probs=87.9
Q ss_pred CcEEEEee-CC------EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEecCCCceEEEE
Q 004789 456 GSHLFSAS-GG------KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKL 522 (730)
Q Consensus 456 ~~~l~s~s-dg------~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~~~~~~~ 522 (730)
+..++.|+ ++ .+..||..+.+....-..+.....+....-++ .++.||.+ ..+..||..+++-. ..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EE 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eC
Confidence 55666665 32 57888988776533211111111111222356 66777765 25778888765422 11
Q ss_pred cC--CCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 523 KG--HQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 523 ~~--h~~~V~~l~~spd~~~l~s~s~d------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
.. +...-.+++ .-+++..+.|+.+ ..+..||..+.+-. .+...+.++. . .+++ .-+++..+.
T Consensus 374 ~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~----~-~~~~-~~~~~iyv~ 443 (534)
T PHA03098 374 PPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS---KGSPLPISHY----G-GCAI-YHDGKIYVI 443 (534)
T ss_pred CCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee---ecCCCCcccc----C-ceEE-EECCEEEEE
Confidence 11 111111222 2356666777632 35788998874321 1111122211 1 1222 234555554
Q ss_pred E-ec--------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCce
Q 004789 595 I-HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 653 (730)
Q Consensus 595 s-~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~ 653 (730)
| .+ ..+.+||..+.+....-.. .....-.+++ ..+++.++.|+.+ +.|.+||..+.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSL-NFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCC-CcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 3 21 1388999887654322111 1111111122 2367777777654 467788877654
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=4.7 Score=40.62 Aligned_cols=173 Identities=10% Similarity=0.069 Sum_probs=105.5
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCc
Q 004789 482 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 559 (730)
Q Consensus 482 ~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~ 559 (730)
.+-...++++.|+|+. .|++..+...-.++=-..|+.++++.- .-...-.|.+..+|+++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 4455569999999999 777666666666665567888888753 11234567888888888877778888888776542
Q ss_pred eec-----ceeecccccCCCCCCCCeEEEEEecCCcEEEEEec-CcEEEEeCCCCc-eee--eecCCC-----CCCCeEE
Q 004789 560 KLC-----SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-GQIDVYEAPTLN-HTS--QLVPDK-----MDLPITY 625 (730)
Q Consensus 560 ~~~-----~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~d-g~I~iwd~~~~~-~~~--~~~~~~-----h~~~v~~ 625 (730)
... ..++...... . .....++|.|....|.+..+ +-+.||.+..+. .+. ...... .-..+.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~-N---~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 162 TVISAKVQKIPLGTTNKK-N---KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cEEeccceEEeccccCCC-C---cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 111 1122211111 1 35678999998888888743 445555554222 111 000000 0234667
Q ss_pred EEEec-CCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 626 ATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 626 ~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
+.|.+ .+.+|+-+.+++.+.-.|... +.+..+.
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ls 271 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLS 271 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC-CeeeeEE
Confidence 77875 566777777788888888754 4344443
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.77 E-value=0.082 Score=37.63 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
...|..++|+|...+||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 567999999999999999999999999998 444
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.73 E-value=0.87 Score=51.45 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=75.8
Q ss_pred eEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECC------
Q 004789 580 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS------ 650 (730)
Q Consensus 580 v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--pdg~~l~sgs~dg~I~iwd~~------ 650 (730)
..-+.-+.-++..++. ....+.|||.+.+.....-.- .....|..+.|. |+|+.+++.+-.+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 4455555556665564 556799999988775433222 237889999986 799999999999999998532
Q ss_pred ---CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 651 ---TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 651 ---~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
+...+..+... .++..+|. +..|.+ +|..++.+ ++.+.|++-.-
T Consensus 111 ~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 111 KGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred CCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEe--CCEEEEECCCc
Confidence 22334444332 45556677 899999 67555544 45788887643
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.66 E-value=1.9 Score=43.66 Aligned_cols=150 Identities=18% Similarity=0.073 Sum_probs=83.9
Q ss_pred CeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEE
Q 004789 528 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 603 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s---~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iw 603 (730)
.+.+.+++++++.++... ....++++..... ... ...+ ..+....|++++...++. .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~------~~~-~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP------VRP-VLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc------cee-eccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence 688999999999887665 3344555554431 111 1222 357888999998777764 44445555
Q ss_pred -eCCCCceee-eecCCCCCCCeEEEEEecCCCEEEEEE---cCCeEEEEECC---CceEEEEeecccccCCCCcccceee
Q 004789 604 -EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 604 -d~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~l~sgs---~dg~I~iwd~~---~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
+..++.... ..........|..+.+||||..++... .++.|++=-+. .+............. .. ...+.
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~-~~~v~- 169 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PL-LSDVT- 169 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cc-cCcce-
Confidence 333333221 222111122899999999999887665 35778776543 221111111111110 10 23355
Q ss_pred EEEEEecCCCCEEEEEeCC
Q 004789 676 LVIAAHPLEPNRIALGLTN 694 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~D 694 (730)
.++|.+ +..+++.+...
T Consensus 170 -~v~W~~-~~~L~V~~~~~ 186 (253)
T PF10647_consen 170 -DVAWSD-DSTLVVLGRSA 186 (253)
T ss_pred -eeeecC-CCEEEEEeCCC
Confidence 999999 66665555443
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.66 E-value=1 Score=49.39 Aligned_cols=146 Identities=8% Similarity=-0.015 Sum_probs=89.2
Q ss_pred CCCeeEEEEe-CcEEEEee----CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-----eEEEEECCCcEEEEecCC
Q 004789 446 KDSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT 515 (730)
Q Consensus 446 ~~~V~~l~~s-~~~l~s~s----dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-----~l~sgs~dg~I~iwd~~~ 515 (730)
-.+|..++|. |+.++-.. +|.+++=|- ..+.. -..|..+.|.|-+ .+++....+.|.+|-+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3578899999 77654432 455554432 22222 3457789998864 555666678999998752
Q ss_pred -----CceEEEEcC---CCCC--eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEE
Q 004789 516 -----KKTKAKLKG---HQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 585 (730)
Q Consensus 516 -----~~~~~~~~~---h~~~--V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~ 585 (730)
++.+..... ..-+ -..+.|+|....|++-.....-.+++++... ..+..-..++ +.|.|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~----srVkaDi~~~----G~IhCACW 163 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS----SRVKADIKTS----GLIHCACW 163 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC----ceEEEeccCC----ceEEEEEe
Confidence 222222111 1112 2357799998888776665555567766532 2222112222 68999999
Q ss_pred ecCCcEEEEE--ecCcEEEEeCC
Q 004789 586 HPDQIHLLSI--HEGQIDVYEAP 606 (730)
Q Consensus 586 spdg~~l~~s--~dg~I~iwd~~ 606 (730)
.+||+.|+++ +.=.-++||-.
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCc
Confidence 9999999985 33346889864
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.57 E-value=1.1 Score=50.66 Aligned_cols=117 Identities=9% Similarity=0.051 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCeEEEEECC-CcEEEEecCCCceEEEEc-CCCCCeEEEEE--eCCCCEEEEEeCCCcEEEEEcCCC---
Q 004789 486 PIATYFILLPQDLFAFGFDD-SSILVHCPCTKKTKAKLK-GHQNRITCLAY--SLSLNVLVSSGADAQLCVWDAVGW--- 558 (730)
Q Consensus 486 ~~v~~i~~spdg~l~sgs~d-g~I~iwd~~~~~~~~~~~-~h~~~V~~l~~--spd~~~l~s~s~dg~I~vwd~~~~--- 558 (730)
...+-+.-+.-+.++....+ ..+.|||.+.+.....-. ...+.|.++.| .|+|+.+++.+-.+.|.+|--...
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444555544544444444 489999999886443322 34688999988 468888888888999999854211
Q ss_pred -ceecceeeccc-ccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 004789 559 -KKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 605 (730)
Q Consensus 559 -~~~~~~~i~~~-~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~ 605 (730)
......++..+ ...+++ .+|.+..|.++|.. +++.++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCC--CCccceeEecCCeE-EEEeCCEEEEECC
Confidence 00011122211 233443 57889999999854 4556678888874
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.25 E-value=1.3 Score=48.66 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=86.7
Q ss_pred CeEEEEEcCCC-eEEEEE--CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCC----CEEEEEeCCCcEEEEEcCCCc
Q 004789 487 IATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL----NVLVSSGADAQLCVWDAVGWK 559 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~----~~l~s~s~dg~I~vwd~~~~~ 559 (730)
++..++|.... .+++.- .+|.+++=| ...+..|+ .|..+.|.|-+ ..+++......|.||.+.-..
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 56778886333 444432 334444433 23455554 58899998843 345666778899999986321
Q ss_pred eecceeecc-cccCCCCCCCC--eEEEEEecCCcEEEE-EecCcEEEEeCCC--CceeeeecCCCCCCCeEEEEEecCCC
Q 004789 560 KLCSKFLHS-FQTGLVPETTI--VNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGK 633 (730)
Q Consensus 560 ~~~~~~i~~-~~~~h~~~~~~--v~~l~~spdg~~l~~-s~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~~~~spdg~ 633 (730)
....+.+.. +.+-.++ -+ -..+.|+|....|++ .....=.+++++. .+....+. ..+.|.|.||.+||+
T Consensus 94 ~e~~K~l~sQtcEi~e~--~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREP--FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQ 168 (671)
T ss_pred cccccceeeeeeeccCC--cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCC
Confidence 111111110 1110000 12 236789999988887 4333333455543 23333343 278899999999998
Q ss_pred EEEEEEcC-CeEEEEECCCc
Q 004789 634 CIYVSCKS-GHVKVFDTSTL 652 (730)
Q Consensus 634 ~l~sgs~d-g~I~iwd~~~~ 652 (730)
.|+++-.. =.-||||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 77765433 34688985543
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.10 E-value=7.6 Score=39.46 Aligned_cols=204 Identities=12% Similarity=0.111 Sum_probs=116.9
Q ss_pred eeEEEEe--CcEEEEee-CCEEEEEEcC------Cc-eEEEEEcC-----CCCCeEEEEEcCCC-------------eEE
Q 004789 449 ISCFALR--GSHLFSAS-GGKISIFSLE------TF-QTLATFAN-----PPPIATYFILLPQD-------------LFA 500 (730)
Q Consensus 449 V~~l~~s--~~~l~s~s-dg~I~vwd~~------t~-~~~~~~~~-----~~~~v~~i~~spdg-------------~l~ 500 (730)
-+.|+++ +.+-++.. .+...+||.. .. ..+.++.. .....+.+.|+... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3678888 44444444 6899999986 12 23344442 12345666665322 467
Q ss_pred EEECCCcEEEEecCCCce-----EEEEc-CCCCCe-EEEEEeC--CCCEEEEEe-CCCcEEEEEcCCCceecc--eeecc
Q 004789 501 FGFDDSSILVHCPCTKKT-----KAKLK-GHQNRI-TCLAYSL--SLNVLVSSG-ADAQLCVWDAVGWKKLCS--KFLHS 568 (730)
Q Consensus 501 sgs~dg~I~iwd~~~~~~-----~~~~~-~h~~~V-~~l~~sp--d~~~l~s~s-~dg~I~vwd~~~~~~~~~--~~i~~ 568 (730)
.++.||+|.-|...-+.. ...+. ...+.| ..+++.. .+.+|..+. ..++|.|||-.-...... ..-..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998543322 11222 112333 3455543 355665543 578999998654211000 00000
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEE-E-------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec----
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLS-I-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---- 630 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~-s-------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp---- 630 (730)
++.+..| -.|..+ .++.+++ . .-|.|-+||. .+..++++...+.-...+.++..|
T Consensus 185 iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 185 LPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 1122211 111111 1223222 2 2357999998 688888886655566667777754
Q ss_pred --CCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 631 --DGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 631 --dg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.|.+|+---.||+|..||..+++.+..+.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 56788888889999999999998776665
No 427
>PRK10115 protease 2; Provisional
Probab=94.09 E-value=15 Score=42.95 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=97.8
Q ss_pred CeeEEEEe--CcEEEEee--CC----EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eE-EEEECC-----CcEEEEe
Q 004789 448 SISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDD-----SSILVHC 512 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s--dg----~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l-~sgs~d-----g~I~iwd 512 (730)
.+..+.++ |++|+.+. +| .|++.|+.+|..+....... -..++|++|+ .| ++...+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35566777 77777765 23 69999999886432221111 1469999998 44 443322 3688889
Q ss_pred cCCC--ceEEEEcCCCCCeE-EEEEeCCCCEEEEEeC---CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 513 PCTK--KTKAKLKGHQNRIT-CLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 513 ~~~~--~~~~~~~~h~~~V~-~l~~spd~~~l~s~s~---dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
+.++ +....+........ .+..+.++++++..+. ++.+.+++....... ...+. .... +....+. +
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~-~ 277 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD-H 277 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-e
Confidence 9888 43444443233333 3333447887665443 457888885331110 01111 1111 1222222 3
Q ss_pred cCCcEEEEEec----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 587 PDQIHLLSIHE----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 587 pdg~~l~~s~d----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
..+.+.+.+.. ..|...++.+......+..+.....+..+.++ .+.++++...+|.-+++-+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 23333333321 23544555421222333332223467778877 34566666667765555443
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.09 E-value=1.6 Score=46.84 Aligned_cols=150 Identities=9% Similarity=0.061 Sum_probs=79.5
Q ss_pred CCeEEEEEeCCCCEEEEEe-----------CCC-cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 527 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s-----------~dg-~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
.....|+|.++|+++++-. ..+ .|.+++-..+.-... ....+..+- .....+++.++| |++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l----~~p~Gi~~~~~G--lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEEL----SMVTGLAVAVGG--VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCC----CCccceeEecCC--EEE
Confidence 4566889999998777642 223 677776543221111 111112221 345789999998 444
Q ss_pred EecCcEEEE-eCCCC-----c--ee-eeecCCC--CCCCeEEEEEecCCCEEEEEEcC-------------------CeE
Q 004789 595 IHEGQIDVY-EAPTL-----N--HT-SQLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV 644 (730)
Q Consensus 595 s~dg~I~iw-d~~~~-----~--~~-~~~~~~~--h~~~v~~~~~spdg~~l~sgs~d-------------------g~I 644 (730)
+....|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 433445544 44211 1 11 1122110 13457789999999866644421 445
Q ss_pred EEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC
Q 004789 645 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg 695 (730)
.-++..+++.. .+. .|+ -++..++|+| +++++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence 55666555432 222 132 2233899999 788887655443
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=2.7 Score=39.99 Aligned_cols=182 Identities=12% Similarity=0.030 Sum_probs=98.8
Q ss_pred CC-eEEEEECCC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCceecceeeccccc
Q 004789 496 QD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 496 dg-~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
+| .+.+.+.-| .|++||+.+|+.+..-.-....+..=-...-|..+. -.-.+|.-..+|.++.+.......+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence 44 555555433 799999999987765543222222111111123332 2345788889998884322211111
Q ss_pred CCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCe---EEEEEecCCCEEEEEEcCCeEEEE
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPI---TYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v---~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
+.-+.++ .|++.|+.+ ....++.-|..+.....++.......+| +.+.| -||...|-.-.+..|..-
T Consensus 131 ------GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI 201 (262)
T COG3823 131 ------GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARI 201 (262)
T ss_pred ------Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEE
Confidence 3333443 455556554 4455776676654443333221112333 33344 356666666666777788
Q ss_pred ECCCceEEEEeeccccc----CCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 648 DTSTLELRCQINLTAYA----QPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 648 d~~~~~~~~~~~~~~~~----~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
|..+|+.+..+..+... +.+.+....+ .+++.|+.+++++||-
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK 248 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK 248 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence 88999988887754332 1222344455 8999995556777763
No 430
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.75 E-value=18 Score=42.48 Aligned_cols=324 Identities=10% Similarity=-0.006 Sum_probs=165.5
Q ss_pred CCCCCCCeeEeecCCCcEEEEeec--CCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQ--LINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~--~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
...++|.....+..+|.+...-+. +....+...++.+ -|..+-..|+..-++|- |.+||.-|.-.+-.+.+....
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~--lge~siassi~~L~ng~-lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEY--LGETSIASSINYLDNGV-LFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEe--cCCcchhhhhhcccCce-EEEeccCCceeeEEccccCCC
Confidence 456778888888888887665554 1112221122222 13455666777777774 888888776666555443321
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe------CcEEEEee----CCEEEEEEcCCceE-E--EEEcC
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS----GGKISIFSLETFQT-L--ATFAN 483 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s------~~~l~s~s----dg~I~vwd~~t~~~-~--~~~~~ 483 (730)
.. ... ++.++ ..-++|..++.- ...+++|+ ||++++....-+-. . ..+.+
T Consensus 341 gs------y~~--------ilet~---~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G 403 (1096)
T KOG1897|consen 341 GS------YVV--------ILETF---VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG 403 (1096)
T ss_pred Cc------hhh--------hhhhc---ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC
Confidence 00 000 11111 244677777766 23455444 68999987543321 1 22333
Q ss_pred CCCCeEEEE--EcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 004789 484 PPPIATYFI--LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 484 ~~~~v~~i~--~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~ 558 (730)
...++.+. +.+.- +++.+-. +.-++..+...-......+.......+..+- .|+.|+-.+ ...|++++-..
T Consensus 404 -ikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~- 479 (1096)
T KOG1897|consen 404 -IKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSAG- 479 (1096)
T ss_pred -ccceeEeeccccccCCcEEEEEec-cceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcchh-
Confidence 34566666 33332 4444433 3344555442211112222333333444332 334444333 34677777652
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC-----
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----- 632 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg----- 632 (730)
.. .... .. +.++..+.+.+...++. +.++.+...++..+. ++..........|.|+.++|-|
T Consensus 480 ~~---~~W~---~p-----~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 480 LR---SEWR---PP-----GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred hh---hccc---CC-----CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCc
Confidence 11 1111 11 34455555555555655 566677777776555 2222222237789999999742
Q ss_pred -CEEEEEEcCCeEEEEE-CCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 633 -KCIYVSCKSGHVKVFD-TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 633 -~~l~sgs~dg~I~iwd-~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+++++|.++..+.+-- ......+...... +. .-+-.++-..+-. +..+|.++..||.+.-+.+...
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~-----~~-~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLS-----GE-IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccC-----CC-ccchheeeEEeec-cceEEEEEcCCceEEEEEEEcc
Confidence 3789999887665443 3444444333211 10 1111122444444 5789999999999876666544
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.67 E-value=9.1 Score=38.91 Aligned_cols=206 Identities=14% Similarity=0.148 Sum_probs=111.2
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecC------CC-ceEEEEcC-----CCCCeEEEEEeCCCC------------EEE
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPC------TK-KTKAKLKG-----HQNRITCLAYSLSLN------------VLV 542 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~------~~-~~~~~~~~-----h~~~V~~l~~spd~~------------~l~ 542 (730)
-+.++++|.+ .-++....+...+||.. .. ..+-.+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999 66666667789999986 12 22333332 234577777764332 256
Q ss_pred EEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeE-EEEEec--CCcEEEEE--ecCcEEEEeCCCCceeee---e
Q 004789 543 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHP--DQIHLLSI--HEGQIDVYEAPTLNHTSQ---L 614 (730)
Q Consensus 543 s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~-~l~~sp--dg~~l~~s--~dg~I~iwd~~~~~~~~~---~ 614 (730)
.+++||+|.-|...-........+..+..... +.|+ .+++.. .+.+|+.. ..++|.+||-. ...+.. +
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~---gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ---GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCC---cceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCc
Confidence 78899999999864322100001110111111 3343 455554 36777774 78999999863 222211 1
Q ss_pred cCC---CC--CCCeE------EEEE---ecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 615 VPD---KM--DLPIT------YATY---SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 615 ~~~---~h--~~~v~------~~~~---spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
... .. ...|. -+.| .++++.=+.|..-|.|-+||.. |.+++++... |. -..=| .++.
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-----g~-LNaPW--G~a~ 251 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-----GR-LNAPW--GLAI 251 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-----Cc-ccCCc--eeee
Confidence 100 00 00010 1111 1222222334445899999976 6667766532 22 12234 4544
Q ss_pred ecC-----CCCEEEEEeCCCcEEEEeCCCCc
Q 004789 681 HPL-----EPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 681 sp~-----~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.|. .+.+|+--=-||+|..+|..+++
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 331 34566655579999999998875
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=93.65 E-value=5 Score=44.88 Aligned_cols=183 Identities=9% Similarity=-0.091 Sum_probs=84.2
Q ss_pred CcEEEEee-C-----CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC--CcEEEEecCCCceEEEEcCCC
Q 004789 456 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQ 526 (730)
Q Consensus 456 ~~~l~s~s-d-----g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d--g~I~iwd~~~~~~~~~~~~h~ 526 (730)
+..+++|+ + ..+..||..+++....-.-+..........-+| ..++||.+ ..+..||..+++-. .+..-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEE-ECCCCC
Confidence 44455665 3 357788988765443222111111111222356 66777754 36888887655321 111111
Q ss_pred -CCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEE
Q 004789 527 -NRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 602 (730)
Q Consensus 527 -~~V~~l~~spd~~~l~s~s~dg---~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~i 602 (730)
......+..-+|+..+.|+.++ .+..||..+.+-.. +..+..... .. ++ ..-+|+..+.| |.+.+
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~~m~~~r~----~~-~~-~~~~~~IYv~G--G~~e~ 419 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GPSTYYPHY----KS-CA-LVFGRRLFLVG--RNAEF 419 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CCCCCCccc----cc-eE-EEECCEEEEEC--CceEE
Confidence 1111111223577777777553 46788887643211 111111111 11 22 23345555555 45778
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCc
Q 004789 603 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTL 652 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~ 652 (730)
||..+.+-...-.. .....-.+++ .-+|+..+.|+.+ ..|.+||..++
T Consensus 420 ydp~~~~W~~~~~m-~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNTWTLIDDP-IYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCcEeEcCCC-CCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 88876654322111 1111111222 2466777777654 23455555443
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.98 Score=52.95 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=82.4
Q ss_pred CCEEEEEEcCCceEEE-----EEcC------CCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceE-EEEcCCCCCe
Q 004789 464 GGKISIFSLETFQTLA-----TFAN------PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRI 529 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~-----~~~~------~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~-~~~~~h~~~V 529 (730)
+..|..||+++...-. -+.. ......++.|+|.= ..++...|+.|++.-+...... ..+ .....+
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~ 201 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQ 201 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Ccccce
Confidence 4479999987643221 1111 12344688899877 7788888999988876543222 222 245678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
++++|+|.|+.++.|...|++.-|-..-.......... ... + ..|.+|+|-....++++
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-~~e---~--yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-VEE---N--YRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeecccceeecccCCC-cCC---C--cceeEEEEecceeEEEE
Confidence 99999999999999999999998876542111111111 111 1 68999999988888876
No 434
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=5.3 Score=38.08 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=99.6
Q ss_pred EEEEe-CcEEEEee---CCEEEEEEcCCceEEEEEcCCCCCeE--EEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcC
Q 004789 451 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 524 (730)
Q Consensus 451 ~l~~s-~~~l~s~s---dg~I~vwd~~t~~~~~~~~~~~~~v~--~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~ 524 (730)
.+.+. |.++.+.+ ...|++||+.+|+.+..-+-....+. .+.-..|....-.-.+|.-..+|.++-+++..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 45555 66666666 36899999999988776543322221 1111222222334578888999999888877665
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 004789 525 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 603 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iw 603 (730)
..+.=+.++. |+.-|+.++...+++.-|..+.... ..++....+..- ..++.+.|- +|...|- -.+..|...
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~--~~v~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL--DTVQVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhc--ceEEEEECCeec--ccccceeee-ccEEEEeeeeecceEEE
Confidence 3344455543 4555776666667777777663322 122212222110 122233332 3444433 255566666
Q ss_pred eCCCCceeeeecCC----------CCCCCeEEEEEecCC-CEEEEE
Q 004789 604 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS 638 (730)
Q Consensus 604 d~~~~~~~~~~~~~----------~h~~~v~~~~~spdg-~~l~sg 638 (730)
|..+|+.+..+... .+....+.+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777766544321 234567788888877 555555
No 435
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.19 E-value=11 Score=41.26 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=62.3
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC-CCCCCCCeEEEEEecCC------cEEEEE--
Q 004789 525 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQ------IHLLSI-- 595 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~-h~~~~~~v~~l~~spdg------~~l~~s-- 595 (730)
.-...+.|+|.|||++|++--..|.|++++..++.......+...... .. +....|+++|+- .+|+++
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge---~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQH---NGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCC---CceeeEEECCCccccCCCcEEEEEEe
Confidence 345678999999998887765569999998765432111111111111 12 578899999874 345543
Q ss_pred e---------cCcEEEEeCCCC--c---eeeeecC--CCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 596 H---------EGQIDVYEAPTL--N---HTSQLVP--DKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 596 ~---------dg~I~iwd~~~~--~---~~~~~~~--~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
. ...|.-|.+... . ....+.. ......-..+.|.|||.+.++.++.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1 123544554311 1 1111111 0112334568899999866655443
No 436
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.10 E-value=8 Score=39.86 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=91.8
Q ss_pred EEEEEEcCCceEEEEEcCC------CCCeEEEEEcCC------CeEEEE-ECCCcEEEEecCCCceEEEEcCCC------
Q 004789 466 KISIFSLETFQTLATFANP------PPIATYFILLPQ------DLFAFG-FDDSSILVHCPCTKKTKAKLKGHQ------ 526 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~------~~~v~~i~~spd------g~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~------ 526 (730)
+|.+||+.+++.++++.-+ ...+..+.+... ++++.+ +..+.|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6788999999988887632 345677777651 233333 344689999999987666554321
Q ss_pred -------------CCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCCC-----ceecce----eecccccCCCCCCCCeE
Q 004789 527 -------------NRITCLAYSL---SLNVLVSSGADAQLCVWDAVGW-----KKLCSK----FLHSFQTGLVPETTIVN 581 (730)
Q Consensus 527 -------------~~V~~l~~sp---d~~~l~s~s~dg~I~vwd~~~~-----~~~~~~----~i~~~~~~h~~~~~~v~ 581 (730)
+.+..++.+| ++++|......+. ++|.+.+. ...... .++ ..+..+ +...
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~--~lG~k~--~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQ--DLGDKG--SQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-E--EEEE-----SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccce--eccccC--CCCc
Confidence 2355566655 5666665554332 34433321 100000 111 111110 2456
Q ss_pred EEEEecCCcEEEE-EecCcEEEEeCCCC---ceeeeecCCCC-CCCeEEEEEec--CCCEEEEE
Q 004789 582 HIQFHPDQIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKM-DLPITYATYSC--DGKCIYVS 638 (730)
Q Consensus 582 ~l~~spdg~~l~~-s~dg~I~iwd~~~~---~~~~~~~~~~h-~~~v~~~~~sp--dg~~l~sg 638 (730)
.++++++|..+++ -..+.|..|+..+. +....+..... -..+..+.+.+ +|.+.+..
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 7889999988888 48889999998751 12222322222 45778888887 66544443
No 437
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.01 E-value=8.7 Score=41.51 Aligned_cols=152 Identities=9% Similarity=-0.017 Sum_probs=84.3
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceE-EEE-cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecce
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~-~~~-~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~ 564 (730)
...+..+++| .++.+.....++-||- |... ... ......+.++.+.+++..++++ .+|.+.. ....+..-...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 3445667777 5555544333333442 2211 111 2234568899999999877765 4566533 33332110000
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGH 643 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~~spdg~~l~sgs~dg~ 643 (730)
.+......... ..+..+.|.+++..+++|..|.+.... ..++.-.... ...-...++.+.|.++++.+++| .+|.
T Consensus 317 ~f~~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred ceeecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 11111111110 358899999999988889888777664 3444433322 11225678899998777666665 6787
Q ss_pred EEEE
Q 004789 644 VKVF 647 (730)
Q Consensus 644 I~iw 647 (730)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7554
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=0.94 Score=53.09 Aligned_cols=141 Identities=12% Similarity=0.069 Sum_probs=87.6
Q ss_pred CeEEEEEcCCC---eEEEEECCCcEEEEecCCCceE-----EEEcC------CCCCeEEEEEeCCCC-EEEEEeCCCcEE
Q 004789 487 IATYFILLPQD---LFAFGFDDSSILVHCPCTKKTK-----AKLKG------HQNRITCLAYSLSLN-VLVSSGADAQLC 551 (730)
Q Consensus 487 ~v~~i~~spdg---~l~sgs~dg~I~iwd~~~~~~~-----~~~~~------h~~~V~~l~~spd~~-~l~s~s~dg~I~ 551 (730)
.|..+...+|+ .++..+.+-.|..||+++-..- .-+.. ......++.|+|.-. ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55677777887 3333344447899998764211 11111 224456788888532 345566788998
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC--CCCCeEEEEE
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK--MDLPITYATY 628 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~--h~~~v~~~~~ 628 (730)
+.-+..-. ..+.....+ ...++++|+|.|+.+++| ..|++.-|.. +++....+.... ....|.+++|
T Consensus 182 V~~~~~~~----~~v~s~p~t-----~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 182 VKSTKQLA----QNVTSFPVT-----NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhh----hhhcccCcc-----cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEE
Confidence 88776422 111211111 568999999999999998 7788888876 455444443221 1478999999
Q ss_pred ecCCCEEEE
Q 004789 629 SCDGKCIYV 637 (730)
Q Consensus 629 spdg~~l~s 637 (730)
-....++++
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 877666664
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=92.87 E-value=15 Score=38.93 Aligned_cols=154 Identities=6% Similarity=-0.033 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEE-EecCCCceEEEE-cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee
Q 004789 485 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 561 (730)
Q Consensus 485 ~~~v~~i~~spdg-~l~sgs~dg~I~i-wd~~~~~~~~~~-~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~ 561 (730)
...+.++.+.|++ .++++ ..|.+.. +| ..++.-... ..-...++++.+.++++.++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 4568899999988 65554 4555543 22 222322222 2234678899999999877665 457664322333221
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEc
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
...+. ...... ...+..+.+.+++..++++.+|.+.. ....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 -W~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 -WSKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred -ccccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 01111 110000 03578899999888888888886653 4444444333321 1113467888887777666555 6
Q ss_pred CCeEEEEE
Q 004789 641 SGHVKVFD 648 (730)
Q Consensus 641 dg~I~iwd 648 (730)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887665
No 440
>PHA03098 kelch-like protein; Provisional
Probab=92.71 E-value=7.3 Score=44.23 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=51.8
Q ss_pred CcEEEEee-C------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC--------cEEEEecCCCceE
Q 004789 456 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--------SILVHCPCTKKTK 519 (730)
Q Consensus 456 ~~~l~s~s-d------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg--------~I~iwd~~~~~~~ 519 (730)
+...+.|+ + +.+..||..+++....-..........+...++ .++.|+.++ .+.+||..+++-.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 66666666 2 468899988765433211111111111222355 556665432 3888998876422
Q ss_pred E--EEcCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 004789 520 A--KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 558 (730)
Q Consensus 520 ~--~~~~h~~~V~~l~~spd~~~l~s~s~d-----g~I~vwd~~~~ 558 (730)
. .+.........+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 470 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 470 ELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred eCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 1 11111111122222 56677777654 46888888774
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=7.5 Score=44.07 Aligned_cols=170 Identities=9% Similarity=0.052 Sum_probs=88.4
Q ss_pred CeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEE----cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEE
Q 004789 448 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 448 ~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~----~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
.+-.+.|+ ...|++.. +|++++|++. |+.+... ......|..+.+..+| .+.+. +|.+.+-+-.....+.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhh
Confidence 77789999 77788888 9999999985 3332221 2233446556666677 44443 4555544422222233
Q ss_pred EEcC---CCCCeEEEEEeCCCC---EEEEEe-CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE
Q 004789 521 KLKG---HQNRITCLAYSLSLN---VLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 593 (730)
Q Consensus 521 ~~~~---h~~~V~~l~~spd~~---~l~s~s-~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~ 593 (730)
++.. ..-.-+|-...+++. .++-.. ..+. .++-.... ...... +...+ +.+..+..||+.++|+
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~---~~q~~~-~~~~~----~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEES---RVQLHA-LSWPN----SSVVKISVSPNRRFLA 232 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecc---cccccc-cCCCC----ceEEEEEEcCCcceEE
Confidence 3322 111112222222221 111111 0110 11111111 011111 22233 3688999999999999
Q ss_pred E-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec
Q 004789 594 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 630 (730)
Q Consensus 594 ~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 630 (730)
. ...|.|.+-++...+....+....| .+...++|.-
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcg 269 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCG 269 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCC-CchHhceeec
Confidence 8 7899999999887777666654332 2223555543
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=16 Score=41.52 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=55.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 004789 527 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 606 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~ 606 (730)
..+..+..+|+.++|+--..+|.|.+-+.+..+..+...+ ..| .....++|..+. -++.+.+..+.+..-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~----~~~----~~p~qm~Wcgnd-aVvl~~e~~l~lvgp- 286 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC----TDH----DPPKQMAWCGND-AVVLSWEVNLMLVGP- 286 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC----CCC----CchHhceeecCC-ceEEEEeeeEEEEcC-
Confidence 5677889999999999999999999988876433222211 122 233477787655 222344555555544
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
.|..+.-+. ...+. +.--+||-.+++.+
T Consensus 287 ~gd~V~f~y----d~t~~-l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 287 PGDSVQFYY----DETAI-LSAEVDGVRIITST 314 (829)
T ss_pred CCCcccccc----CCCce-eeeccCeeEEeccc
Confidence 233333332 11222 33345665555544
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.14 E-value=2.5 Score=45.46 Aligned_cols=139 Identities=13% Similarity=0.200 Sum_probs=90.0
Q ss_pred CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--------eEEEEECCCcEEEEecCCCc-eEEEEc-
Q 004789 456 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCTKK-TKAKLK- 523 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--------~l~sgs~dg~I~iwd~~~~~-~~~~~~- 523 (730)
.+.|+.-+ ...++-.|++.|+.+..+..|... -+.|.|+. .-++|-.+..|.-.|.+-.. .+....
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 33444433 478888899999999999877765 46677754 23566677777777866432 222211
Q ss_pred -C--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcE
Q 004789 524 -G--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 600 (730)
Q Consensus 524 -~--h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I 600 (730)
. ......|..-.. +.++|+|+..|.|++||--.- .-.+...+-. ..|..+..+.+|+++++.....+
T Consensus 557 KdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~------rAKtalP~lG---~aIk~idvta~Gk~ilaTCk~yl 626 (776)
T COG5167 557 KDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGK------RAKTALPGLG---DAIKHIDVTANGKHILATCKNYL 626 (776)
T ss_pred hhcccccccccccccc-CceEEEecCCCceeeehhhcc------hhhhcCcccc---cceeeeEeecCCcEEEEeecceE
Confidence 1 112223333333 348999999999999996541 1121222322 57889999999999999777788
Q ss_pred EEEeCC
Q 004789 601 DVYEAP 606 (730)
Q Consensus 601 ~iwd~~ 606 (730)
.+.|++
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 888865
No 444
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.87 E-value=18 Score=40.27 Aligned_cols=147 Identities=18% Similarity=0.069 Sum_probs=73.7
Q ss_pred CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEE
Q 004789 504 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 504 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
..+...++|.. |.....+.........+...++|.+++... ..+..+|+... ......+. .+.. ..=..+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~---~~~~---~~HHD~ 195 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLP---GGYY---DFHHDI 195 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----TTEE----B-S-E
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecC---Cccc---cccccc
Confidence 44567777744 555555543222222266788998877554 78888888752 21112222 1000 011257
Q ss_pred EEecCCcEEEEEe--------------cCcEEEEeCCCCceeeeecCCCC-------------------------CCCeE
Q 004789 584 QFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM-------------------------DLPIT 624 (730)
Q Consensus 584 ~~spdg~~l~~s~--------------dg~I~iwd~~~~~~~~~~~~~~h-------------------------~~~v~ 624 (730)
..-|+|++|+.+. +..|..+| .+|+.+..+....| =..+.
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 7888998888743 23466677 67776665432221 12478
Q ss_pred EEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecc
Q 004789 625 YATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 625 ~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 661 (730)
++.+.+ ++.+++++-.-..|...|..+++....+..+
T Consensus 275 si~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 899988 5555555544568999999999988777643
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.82 E-value=13 Score=35.95 Aligned_cols=153 Identities=12% Similarity=-0.004 Sum_probs=83.6
Q ss_pred EEEEcCCCeEEEEECCCcEEEEecCC--CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC---C---cEEEE---EcCCC
Q 004789 490 YFILLPQDLFAFGFDDSSILVHCPCT--KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---A---QLCVW---DAVGW 558 (730)
Q Consensus 490 ~i~~spdg~l~sgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d---g---~I~vw---d~~~~ 558 (730)
.+...+.+.|+.+...+.|.+|++.. .+.+..+..- +.|..++++..|++|++--.+ . .+|+| +....
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 33344433343435567899999883 3566777644 789999999999999986432 2 45654 22210
Q ss_pred ceecceeecccccCCC------------------CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce-ee-----ee
Q 004789 559 KKLCSKFLHSFQTGLV------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-TS-----QL 614 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~------------------~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~-~~-----~~ 614 (730)
+ ..++.....||. |...++.+++..|-.--|++|.++.+.+|.+..... .. .|
T Consensus 101 ~---~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 101 E---NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred c---CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEec
Confidence 0 000000001100 112467788888865567777788899998753322 11 11
Q ss_pred c----CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 615 V----PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 615 ~----~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
. ....+.....+++. +.|+|..+ +-.++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 0 00012234455554 45676664 555666654
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.72 E-value=9.1 Score=33.96 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=68.6
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCC--------ceEEEEcCCCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEcCC
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTK--------KTKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~--------~~~~~~~~h~~~V~~l~~sp-----d~~~l~s~s~dg~I~vwd~~~ 557 (730)
.|.... .|++++.-|.|.|++.... ..+..+. ....|++++-.+ +...|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 444444 7888888899999987643 2334444 455678776543 235666665 56789999987
Q ss_pred CceecceeecccccCCCCCCCCeEEEEEec----CCcEEEEEecCcEEEEeCCCCceee
Q 004789 558 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 558 ~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp----dg~~l~~s~dg~I~iwd~~~~~~~~ 612 (730)
....-.+.+. ..|.++.+-. +...+++|.+..|.-||....+...
T Consensus 83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 4332222222 5677887743 3456666788888888875444433
No 447
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.33 E-value=14 Score=41.31 Aligned_cols=130 Identities=12% Similarity=-0.035 Sum_probs=74.3
Q ss_pred EEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCC-CCeEEEEEecCCCEEEEEEc-------------CCeEEEEE
Q 004789 583 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD 648 (730)
Q Consensus 583 l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~l~sgs~-------------dg~I~iwd 648 (730)
+...++|.+++... +.++.+|+ .|+.+..+...... ..=..+..-|+|++|+.+.. ...|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 66678887776544 88999998 57777666543211 11245677799999998872 23467778
Q ss_pred CCCceEEEEeecccccC-C----------------CCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 004789 649 TSTLELRCQINLTAYAQ-P----------------GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 649 ~~~~~~~~~~~~~~~~~-~----------------gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
.+|+.+..+....+.. . +.........++.+.+.++.+++|+-.-..|...|..+++.+|..
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8899888876543321 0 111223334599999966667777766668999999999999998
Q ss_pred cCCC
Q 004789 712 LPFT 715 (730)
Q Consensus 712 ~~~~ 715 (730)
.++.
T Consensus 310 g~~~ 313 (477)
T PF05935_consen 310 GPPG 313 (477)
T ss_dssp S-ST
T ss_pred CCCC
Confidence 7763
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.23 E-value=6.8 Score=42.08 Aligned_cols=147 Identities=14% Similarity=0.060 Sum_probs=78.2
Q ss_pred CeEEEEEcCCC-eEEEEE-----------CCC-cEEEEecCC--Cc--eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCc
Q 004789 487 IATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 549 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~ 549 (730)
....++|.++| .+++-. ..+ .|.+++-.. |+ ....+.......+.+++.++| .++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 34588999999 444321 223 677776443 22 223443334456889999988 444 444433
Q ss_pred EEEEEcCCCcee--cceee-cccccC---CCCCCCCeEEEEEecCCcEEEE-Eec-------------------CcEEEE
Q 004789 550 LCVWDAVGWKKL--CSKFL-HSFQTG---LVPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVY 603 (730)
Q Consensus 550 I~vwd~~~~~~~--~~~~i-~~~~~~---h~~~~~~v~~l~~spdg~~l~~-s~d-------------------g~I~iw 603 (730)
.++.|....... ....+ ..+... +. .....++|.|||.+.++ +.. |.|.-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~---~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHH---HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCccc---ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 334455331100 11111 111111 11 34778999999987765 421 345556
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
|..+++ +..+.. + ......++|+++|+++++-..+
T Consensus 170 ~pdg~~-~e~~a~-G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGK-LRVVAH-G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCe-EEEEec-C-cCCCccceECCCCCEEEEccCC
Confidence 654433 333322 2 3445789999999887765433
No 449
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.08 E-value=25 Score=37.76 Aligned_cols=198 Identities=10% Similarity=-0.050 Sum_probs=110.4
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCC--CCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCC-CCeEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 531 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~--~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~ 531 (730)
+..++.+. +|.|.-.|..++..+....... ..+.+-.+..+|.++.++.++.++.+|..+|+.+....... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 44444444 8999999999988765443221 23333333336688899999999999998898887776544 11222
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe--cCcEEEEeCCCCc
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN 609 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~--dg~I~iwd~~~~~ 609 (730)
-..-.++ .+..++.++.+.-.|..+++..-....... .. ..+..-....++..++... ++.+.-.|..+|.
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 2222233 344444678888888887765333222200 00 0111111123343333333 5567777887777
Q ss_pred eeeeecCCCC--CCCeEEEEEec-----CCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 610 HTSQLVPDKM--DLPITYATYSC-----DGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 610 ~~~~~~~~~h--~~~v~~~~~sp-----dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
.......... ...+....... .+.-++.++.++.+...+..+++.+..+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 7655321100 11010011111 122346777888899999999998877764
No 450
>PRK10115 protease 2; Provisional
Probab=91.08 E-value=37 Score=39.81 Aligned_cols=235 Identities=8% Similarity=0.007 Sum_probs=111.8
Q ss_pred CcEEEEEEecCCCEEEEEeCC-C----cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 382 GRVVRLIYSHSGDFLVALTQT-A----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~d-g----~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
-.+..+.+||||++|+.+... | .|++-|+.+ |..+...+ ...-..++|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i----~~~~~~~~w~~ 181 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELL----DNVEPSFVWAN 181 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccc----cCcceEEEEee
Confidence 346678899999988877553 2 344544443 33211111 1111458888
Q ss_pred -CcEEEEee-C------CEEEEEEcCCc--eEEEEEcCCCCCeE-EEEEcCCC-eEEEEE---CCCcEEEEecC--CCce
Q 004789 456 -GSHLFSAS-G------GKISIFSLETF--QTLATFANPPPIAT-YFILLPQD-LFAFGF---DDSSILVHCPC--TKKT 518 (730)
Q Consensus 456 -~~~l~s~s-d------g~I~vwd~~t~--~~~~~~~~~~~~v~-~i~~spdg-~l~sgs---~dg~I~iwd~~--~~~~ 518 (730)
++.|+... + ..|+.+++.++ +....+........ .+..+.++ .++..+ .++.+.+++.. ++..
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~ 261 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP 261 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc
Confidence 55555443 2 36888999888 44444443333333 33334466 444333 23578888843 3433
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~d---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
...+....+....+. +..+.+.+....+ ..|...++.. ...... +...... ..|..+.+. +..|+.
T Consensus 262 ~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~--~~~~~~---l~~~~~~--~~i~~~~~~--~~~l~~~ 331 (686)
T PRK10115 262 FVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEE---LIPPREN--IMLEGFTLF--TDWLVVE 331 (686)
T ss_pred eEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCC--cccCeE---EECCCCC--CEEEEEEEE--CCEEEEE
Confidence 222322222222322 3333333332222 2344444442 111111 1222111 357778887 345554
Q ss_pred E-ecCc--EEEEeCCCCceeeeecCCCCCCCeEEEEEe--cCCC-EEEEEEc---CCeEEEEECCCce
Q 004789 595 I-HEGQ--IDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSCK---SGHVKVFDTSTLE 653 (730)
Q Consensus 595 s-~dg~--I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--pdg~-~l~sgs~---dg~I~iwd~~~~~ 653 (730)
. .+|. ++++|..++ .+..+.... ...+..+.++ +++. ++++.+. -+.++.+|..+++
T Consensus 332 ~~~~g~~~l~~~~~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTR-EVIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCC-ceEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3 5554 566665433 333433111 2223333444 4443 4444333 3889999998875
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.75 E-value=11 Score=43.26 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred eEEEEEec--CCcEEEEE-ecCcEEEEeCCC-------C----c---------eeeeecCCCCCCCeEEEEEe--cCCCE
Q 004789 580 VNHIQFHP--DQIHLLSI-HEGQIDVYEAPT-------L----N---------HTSQLVPDKMDLPITYATYS--CDGKC 634 (730)
Q Consensus 580 v~~l~~sp--dg~~l~~s-~dg~I~iwd~~~-------~----~---------~~~~~~~~~h~~~v~~~~~s--pdg~~ 634 (730)
|+.|.... +...|+++ .||.|.+|.+++ . + +...+. -...+++++++ ...++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceE
Confidence 55555444 33445554 889999996531 0 0 111121 25688999998 77889
Q ss_pred EEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC--CC---EEEEEeCCCcEEEEeC
Q 004789 635 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE--PN---RIALGLTNGRVHVIEP 702 (730)
Q Consensus 635 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~--~~---~las~s~Dg~I~iWd~ 702 (730)
||+++....|.||-............ ...+...|- +|+|-+.+ +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~-----s~~~~hNIP--~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVP-----SHQHSHNIP--NVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccccccc-----ccccccCCC--eeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888887654311111100 011233466 88887733 22 7888999999999888
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.75 E-value=27 Score=37.73 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=82.8
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 608 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~ 608 (730)
...+..++|+.+++.+.....++-||-.... ...+. .... ..++.+.+.+++..++++.+|.+..= ...+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~---~~~~---~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHN---RASA---RRIQNMGWRADGGLWLLTRGGGLYVS-KGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEec---CCCc---cceeeeeEcCCCCEEEEeCCceEEEe-cCCC
Confidence 3445667788777766544333344443200 01122 1111 57889999999999998877776543 3334
Q ss_pred c-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC
Q 004789 609 N-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 683 (730)
Q Consensus 609 ~-----~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 683 (730)
+ .............+..+.|.+++..+++| .+|.+.... +.|+.=...... .+. ....+ .+.|.+
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~----~~~-~~~ly--~v~f~~- 380 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGA----DNI-AANLY--SVKFFD- 380 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEcccc----CCC-Cccee--EEEEcC-
Confidence 3 12222211113458899999887766665 678776654 444322221100 011 23466 888876
Q ss_pred CCCEEEEEeCCCcEEEE
Q 004789 684 EPNRIALGLTNGRVHVI 700 (730)
Q Consensus 684 ~~~~las~s~Dg~I~iW 700 (730)
+++.+++| .+|.|.-|
T Consensus 381 ~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCceEEEe-CCcEEEEe
Confidence 45555555 68887655
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=4.6 Score=42.90 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=94.8
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
|.+....+-..|.+.-|.+.+..+. ....+-+. ..++|.++.||+|.+.||+--.+.+|.+.+....+....
T Consensus 32 DaNkqlfavrSggatgvvvkgpndD-VpiSfdm~---d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~---- 103 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDD-VPISFDMD---DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE---- 103 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCC-CCceeeec---CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH----
Confidence 5555555555677778887754422 22222222 467999999999999999999999999998754432111
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCEEEEEEcCC-ceEEEEEcCCCCCeEEEEEcCCC---
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD--- 497 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~I~vwd~~t-~~~~~~~~~~~~~v~~i~~spdg--- 497 (730)
+. .++. ..+..|....|+ ..-+|...+..+-+|-+.. ...++..+.|...|.-..|.++.
T Consensus 104 -------~~--~~ck------~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 104 -------YT--QECK------TKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred -------HH--HHhc------cCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence 00 0010 134568899999 7778888866667776543 23445556778888888888887
Q ss_pred eEEEEECCCcEEEEecCCC
Q 004789 498 LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~ 516 (730)
.++++-..+++.=+-++++
T Consensus 169 LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 169 LLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eeeccccccccccEEEeec
Confidence 3444434444444444444
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=3.5 Score=44.50 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=59.6
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEE---------CCCceEE--EEee---cccccCCCCcccceeeEEEEEecCC--
Q 004789 621 LPITYATYSCDGKCIYVSCKSGHVKVFD---------TSTLELR--CQIN---LTAYAQPGTISLELYPLVIAAHPLE-- 684 (730)
Q Consensus 621 ~~v~~~~~spdg~~l~sgs~dg~I~iwd---------~~~~~~~--~~~~---~~~~~~~gh~~~~v~~~~v~~sp~~-- 684 (730)
-.|..+..++.|..++-.+.+|.+.++= +..|+.. ++.. ...|.. +..+....++|||..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts----s~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS----STSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc----CCceeeeeccccCCccC
Confidence 3567788889999999888898764432 2233221 2111 111111 122445599999944
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 685 PNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 685 ~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
...|..-+.|..||+|+..+....|..+++
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 467888889999999999999888887655
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.60 E-value=0.037 Score=58.50 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=99.9
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP 606 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~ 606 (730)
.....|.|.+.-++.++.+..+..||-... .+. +...+ +....++|..++..+++ . ..+.+.+||+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq------~~l---e~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ------VIL---ELNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc------eec---ccCCc--hhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 345568887777888888889999987651 111 11111 45667889888888887 4 77899999996
Q ss_pred CCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 607 TLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 607 ~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
+.. -+++..+ .+.... ..|++.+..++.|...|.+.|++..+.+.+.+. |.|...+. +.+|.+ .
T Consensus 106 ~ey-tqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------Gkh~RRgt--q~av~l--E 170 (615)
T KOG2247|consen 106 SEY-TQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------GKHQRRGT--QIAVTL--E 170 (615)
T ss_pred hhh-HHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh--------ccccccee--EEEecc--c
Confidence 543 2233221 122222 778999999999988999999998876654443 63354555 889988 4
Q ss_pred CEEEEEeCCCcEEEEeC
Q 004789 686 NRIALGLTNGRVHVIEP 702 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~ 702 (730)
.+.+.++.|..+.+-.-
T Consensus 171 d~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 171 DYVILCDCDNTLSVTTQ 187 (615)
T ss_pred ceeeecCcHHHHHHhhh
Confidence 57777777766554443
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=90.03 E-value=15 Score=41.09 Aligned_cols=184 Identities=7% Similarity=-0.042 Sum_probs=85.8
Q ss_pred eEEEEECCC-----cEEEEecCCCceEE--EEcCCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCceecceeecc
Q 004789 498 LFAFGFDDS-----SILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 498 ~l~sgs~dg-----~I~iwd~~~~~~~~--~~~~h~~~V~~l~~spd~~~l~s~s~d--g~I~vwd~~~~~~~~~~~i~~ 568 (730)
.+++||.++ .+..||..+++-.. .+....... +++ .-++...+.|+.+ ..+..||..+.+- ..+..
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W---~~~~~ 348 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAW---VNMPS 348 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeE---EECCC
Confidence 556666543 57778887764322 111111111 222 2356666777753 3578888765322 12221
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~-s~d---g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
+..... .. +++ .-+|+..+. |.+ ..+..||..+.+-...-........ ..+..-+|+..+.| |.+
T Consensus 349 l~~~r~----~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G~~ 417 (480)
T PHA02790 349 LLKPRC----NP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVG---RNA 417 (480)
T ss_pred CCCCCc----cc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEEC---Cce
Confidence 221111 11 222 235655555 433 3477898876654321111100111 12223456655665 356
Q ss_pred EEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCceeee
Q 004789 645 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWG 710 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D-----g~I~iWd~~~~~~~w~ 710 (730)
.+||..+++=... .. .+..+.. .. .+.. +++..+.||.+ .+|..||+.+. +|.
T Consensus 418 e~ydp~~~~W~~~-~~---m~~~r~~--~~--~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~--~W~ 475 (480)
T PHA02790 418 EFYCESSNTWTLI-DD---PIYPRDN--PE--LIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTY--SWN 475 (480)
T ss_pred EEecCCCCcEeEc-CC---CCCCccc--cE--EEEE---CCEEEEECCcCCCcccceEEEEECCCC--eEE
Confidence 7888876542211 11 0101101 11 2222 57788888865 35778887654 454
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.01 E-value=49 Score=39.44 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=77.8
Q ss_pred CCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC-------CCCCCeEEEEEecCCcEEEEEecC
Q 004789 527 NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV-------PETTIVNHIQFHPDQIHLLSIHEG 598 (730)
Q Consensus 527 ~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~-------~~~~~v~~l~~spdg~~l~~s~dg 598 (730)
.+..+++|+| +...+|.....|...|||+..+.......+. ...... ...+.-..+.|.++...|+++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 4567899998 4468999999999999999322211111111 111110 001234578999998999999889
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCC
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd--g~~l~sgs~dg~I~iwd~~~ 651 (730)
.+.++|+.+......+........|..+.-+++ +..++. ....|...++.+
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 999999987766432322234677888888876 333332 235677777766
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.48 E-value=28 Score=38.43 Aligned_cols=272 Identities=14% Similarity=0.131 Sum_probs=133.0
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
-..+|.++.+...|. +.+|+.||-.+ ++..+++.++.... ....+|..+..+ ...
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dGL~~----------------------fd~~~gkalql~s~-~~dk~I~al~~d~qg~ 218 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDGLSY----------------------FDAGRGKALQLASP-PLDKAINALIADVQGR 218 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCcceE----------------------EccccceEEEcCCC-cchhhHHHHHHHhcCc
Confidence 357888999999997 67777777543 34444444443221 133667777777 778
Q ss_pred EEEeeCCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCC--CCCeEEEEEe
Q 004789 459 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYS 535 (730)
Q Consensus 459 l~s~sdg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s 535 (730)
+..|++.-|++.+.+..+...... -....|..+.-..+|.+-.|+..|-.+.--.+.+-.+...+.| -+.|.++...
T Consensus 219 LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D 298 (671)
T COG3292 219 LWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLD 298 (671)
T ss_pred EEEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeec
Confidence 888998778888876522221111 1233454444444446667777665443332322222222222 2445666666
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--CCcEEEE-EecCcEEEEeCCCCceee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--dg~~l~~-s~dg~I~iwd~~~~~~~~ 612 (730)
.+|. |-+++.+|.+++-+-. ...+ ..+. ...| ..+...+..| .+..+-. -+-|.+.+-+-.++..++
T Consensus 299 ~dGs-LWv~t~~giv~~~~a~-w~~m--a~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~ 368 (671)
T COG3292 299 TDGS-LWVGTYGGIVRYLTAD-WKRM--AVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVR 368 (671)
T ss_pred cCCC-EeeeccCceEEEecch-hhhe--eeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEE
Confidence 6665 4455555555443321 1100 0011 0111 1111122222 1111111 122233344444555544
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
.... .....|+..++..+|. +-.|+...-+-.|+..+ +-...... |--.++|. ++.-.| +++ |..|
T Consensus 369 sv~q-~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~a-------gl~ss~V~--aived~-dns-LWIG 435 (671)
T COG3292 369 SVHQ-LRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDA-------GLPSSEVS--AIVEDP-DNS-LWIG 435 (671)
T ss_pred Eeee-ccccccchhhhccCCc-EEEEecccchhhhccCCccccccccc-------CCccccee--eeeecC-CCC-EEEe
Confidence 4322 1245566666766554 44455553455666655 32222222 22244566 666677 445 7778
Q ss_pred eCCCcEE
Q 004789 692 LTNGRVH 698 (730)
Q Consensus 692 s~Dg~I~ 698 (730)
+.+|.++
T Consensus 436 Ts~Glvk 442 (671)
T COG3292 436 TSGGLVK 442 (671)
T ss_pred ccCCeEe
Confidence 7777654
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.23 E-value=2.7 Score=41.33 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=51.5
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecce-eeccccc-------CCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQT-------GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 605 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~-~i~~~~~-------~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~ 605 (730)
+..++.+|++.+.+|.+++||+.+++..... .+..+.. ... ..|..+.++.+|.-+++-.+|..+.||.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~---~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSS---PNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCC---CcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4456888999999999999999986543222 2221222 122 5788999998998888767788999987
Q ss_pred CCCc
Q 004789 606 PTLN 609 (730)
Q Consensus 606 ~~~~ 609 (730)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 5443
No 460
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.00 E-value=33 Score=36.09 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=66.4
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCc------EEEEEcCCCc--e-----ecceeecccccCCC--CCCCCeEEEEEecCCcE
Q 004789 527 NRITCLAYSLSLNVLVSSGADAQ------LCVWDAVGWK--K-----LCSKFLHSFQTGLV--PETTIVNHIQFHPDQIH 591 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~dg~------I~vwd~~~~~--~-----~~~~~i~~~~~~h~--~~~~~v~~l~~spdg~~ 591 (730)
+.+..+.+.+++..+++.+.+|. +..+++.... . .....+. -..+.. ......-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCCE
Confidence 45678888866666777777777 6666554310 0 0001111 001100 00013447888788888
Q ss_pred EEEE-ec------CcEEEEeCCCCceeeeecCC-------------CCCCCeEEEEEecCCCEEEEEEc
Q 004789 592 LLSI-HE------GQIDVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 592 l~~s-~d------g~I~iwd~~~~~~~~~~~~~-------------~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
+++. .+ ..|+.++.. |+.+..+... ..+..+-+++++|+|+.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 8886 55 678899875 6665554211 23567889999999997776655
No 461
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.90 E-value=2.9 Score=44.22 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE-EEE-cCCCC----CeE-EEEEeCCCCEEEEEeCCC
Q 004789 477 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKL-KGHQN----RIT-CLAYSLSLNVLVSSGADA 548 (730)
Q Consensus 477 ~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~-~~~-~~h~~----~V~-~l~~spd~~~l~s~s~dg 548 (730)
.+..+......+..+-..||| .++.-+. ..+.++++.+.... +++ ....+ .|+ ++..-..|..+.+++.||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 344455566778888999999 5555443 57888887654221 111 11111 122 122233456678888999
Q ss_pred cEEEE-EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEE
Q 004789 549 QLCVW-DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 626 (730)
Q Consensus 549 ~I~vw-d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~ 626 (730)
.|.-| |.+.+.......+. ..+- .+ .++..+.-..+.+-+++ ...|++.++.....+.+-.-. --..+.-+
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R-~f~l-~p--a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~ 363 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIR-NFKL-AP--AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLV 363 (733)
T ss_pred ceeeeeeeecCCCCcceeee-cccc-Cc--ccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCccee
Confidence 98877 55543221111111 1110 00 23333332223344554 567777777654443332111 13356678
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEE
Q 004789 627 TYSCDGKCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 627 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
++||++.++++- ..|.|+++.+++..+.
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCC
Confidence 999999998875 3588999998876543
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.84 E-value=9.9 Score=40.15 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce-ecceeecccccCCCCCCCCeEEEEEecC---CcEEEE--Eec----
Q 004789 528 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--IHE---- 597 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~-~~~~~i~~~~~~h~~~~~~v~~l~~spd---g~~l~~--s~d---- 597 (730)
..++|+|.|||+.+++ ...|.|++++ ..+.. .....+..+..... .....++++|+ ..+|++ ...
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~---~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGE---RGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTT---BSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccccccccccc---CCcccceeccccCCCCEEEEEEEcccCCC
Confidence 4678999999987775 5599999999 33332 11111111222222 57889999994 345544 322
Q ss_pred ----CcEEEEeCCCC-------cee-eeecC-CCCCCCeEEEEEecCCCEEEEEEcCC
Q 004789 598 ----GQIDVYEAPTL-------NHT-SQLVP-DKMDLPITYATYSCDGKCIYVSCKSG 642 (730)
Q Consensus 598 ----g~I~iwd~~~~-------~~~-~~~~~-~~h~~~v~~~~~spdg~~l~sgs~dg 642 (730)
..|.-|....+ +.+ ..+.. ......-..+.|.|||.+.++.+..+
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23544544333 111 11121 12245567799999997666655433
No 463
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.65 E-value=15 Score=41.57 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=83.3
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
...|.|+.++.+..||.|++|++...+....|.. ..+-..+.|...| |+++.+|..+.-|.-..-.....
T Consensus 21 qshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--------~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqf 90 (1636)
T KOG3616|consen 21 QSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--------AKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQF 90 (1636)
T ss_pred eecCCCceEEEEecCCcEEEEeecccchhhhhhh--------cCCccceeeeccc--eEEEeccchhheeeccCcchhhc
Confidence 4569999999999999999999975433333322 2233446666666 67777777777776443211110
Q ss_pred ----cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-------CcEEEEe-eCCEEEEEEcCCceEEEEEcCCCC
Q 004789 419 ----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSA-SGGKISIFSLETFQTLATFANPPP 486 (730)
Q Consensus 419 ----~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-------~~~l~s~-sdg~I~vwd~~t~~~~~~~~~~~~ 486 (730)
.....++....|+.....+.+ -.+.|..+... +++=.+- .-..|.+-|+.++.....+....-
T Consensus 91 dyndqsekefss~~cdptaqnvvgt-----lcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~ 165 (1636)
T KOG3616|consen 91 DYNDQSEKEFSSILCDPTAQNVVGT-----LCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGL 165 (1636)
T ss_pred cccchhhhhccceecCchhhhhhhh-----hccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCc
Confidence 122233334444433332221 12334333332 2221221 245666777766655444432223
Q ss_pred CeEEEEEcCCCeEEEEECCCcEEEEecCCC
Q 004789 487 IATYFILLPQDLFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 487 ~v~~i~~spdg~l~sgs~dg~I~iwd~~~~ 516 (730)
.|--+.+......+++....+|.+-|+++.
T Consensus 166 aidelkilgkdryli~~ts~siii~d~es~ 195 (1636)
T KOG3616|consen 166 AIDELKILGKDRYLIAHTSESIIIADLESN 195 (1636)
T ss_pred chhhhhhccccceEEeeccccEEEeecccc
Confidence 343333332233444455556667676654
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.64 E-value=16 Score=42.07 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=87.0
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEE------EEc----------------CCCCCeEEEEEcCCC---eEEEEECCCcEEE
Q 004789 456 GSHLFSASGGKISIFSLETFQTLA------TFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV 510 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~------~~~----------------~~~~~v~~i~~spdg---~l~sgs~dg~I~i 510 (730)
.++++.+..+.|.||+...-.... .+. .....|+.+....=| .|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 678888889999999986422211 110 012345666554434 8899999999999
Q ss_pred EecCC-------C----c---------eEEEEcCCCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCCCceecceeecc
Q 004789 511 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 511 wd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~ 568 (730)
|..++ . . +...+. ....+++++++ ...++||+++....|.||-....... ......
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r-~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER-FYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc-cccccc
Confidence 97531 0 0 111122 34578899998 77888888888888888765542110 011111
Q ss_pred cccCCCCCCCCeEEEEEecCC-----c-EEEE-EecCcEEEEeC
Q 004789 569 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA 605 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg-----~-~l~~-s~dg~I~iwd~ 605 (730)
.... ..|.+|+|-++. . .+++ +-.|.+.+|++
T Consensus 207 ~~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1223 358899997743 2 4444 46788888777
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.54 E-value=35 Score=35.86 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=83.9
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCc------EEEEecCC--C--ceEE-----EEcCCCC--------CeEEEEEeCCCCE
Q 004789 485 PPIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTKA-----KLKGHQN--------RITCLAYSLSLNV 540 (730)
Q Consensus 485 ~~~v~~i~~spdg-~l~sgs~dg~------I~iwd~~~--~--~~~~-----~~~~h~~--------~V~~l~~spd~~~ 540 (730)
-+.++.+.+.+++ .+++.+.+|. +..+++.. + ..+. .+..-.+ -.-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 3567788888666 7777777777 66665543 1 1111 1111111 2337888788888
Q ss_pred EEEEeCC------CcEEEEEcCCCceecceeecccc-------cCCCCCCCCeEEEEEecCCcEEEEE------ecC---
Q 004789 541 LVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQ-------TGLVPETTIVNHIQFHPDQIHLLSI------HEG--- 598 (730)
Q Consensus 541 l~s~s~d------g~I~vwd~~~~~~~~~~~i~~~~-------~~h~~~~~~v~~l~~spdg~~l~~s------~dg--- 598 (730)
+++.-.+ ..|+.++.. +.......+.... .+. ......-+++++|+|+.|++. .|+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~-~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGR-RNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccc-cCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 7776556 678888876 3332222222111 000 011567899999999955542 232
Q ss_pred --------cEEEEeCCC-Cceee--eecCCC-----CCCCeEEEEEecCCCEEE
Q 004789 599 --------QIDVYEAPT-LNHTS--QLVPDK-----MDLPITYATYSCDGKCIY 636 (730)
Q Consensus 599 --------~I~iwd~~~-~~~~~--~~~~~~-----h~~~v~~~~~spdg~~l~ 636 (730)
.|..||..+ +.... .+.... ....+..+.+-+++++|+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 134455544 32222 222221 357788999999998776
No 466
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.38 E-value=16 Score=32.46 Aligned_cols=116 Identities=7% Similarity=0.002 Sum_probs=71.5
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceec---ceeecccccCCCCCCCCeEEEEEec-----CCcEEEEEecCcEEEEe
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE 604 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~---~~~i~~~~~~h~~~~~~v~~l~~sp-----dg~~l~~s~dg~I~iwd 604 (730)
.|......|++++..|.|.|++........ ...+..+..+ ..|++++-.+ +...|+.|....+..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 455555678888888999999876532111 1122212222 3577776554 35667779999999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEec----CCCEEEEEEcCCeEEEEECCCceEEEE
Q 004789 605 APTLNHTSQLVPDKMDLPITYATYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQ 657 (730)
Q Consensus 605 ~~~~~~~~~~~~~~h~~~v~~~~~sp----dg~~l~sgs~dg~I~iwd~~~~~~~~~ 657 (730)
+.....+..-. -...+.++.+.. +..++++| .+..|.-||....+....
T Consensus 80 V~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCchhhhhh---CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 98766543222 256677777742 33455555 467788888766554433
No 467
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=31 Score=34.89 Aligned_cols=265 Identities=10% Similarity=0.036 Sum_probs=139.0
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 423 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~ 423 (730)
+++...+..+.-++|.|+.....+.+...+.. .+- +-.+.-.|++...+.-|....+.|+.+...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gy--aygv~vsGn~aYVadlddgfLivdvsdpss-------- 160 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----DGY--AYGVYVSGNYAYVADLDDGFLIVDVSDPSS-------- 160 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-----Cce--EEEEEecCCEEEEeeccCcEEEEECCCCCC--------
Confidence 45666677888999999987665544444331 122 233445688888887666666677654432
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceE---EEEEcCCCCCeEEEEEcCCC-e
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD-L 498 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~---~~~~~~~~~~v~~i~~spdg-~ 498 (730)
..+....- .....-..++.||++-..+. |+-+.+-|+..... +.... ....+.++..+++- +
T Consensus 161 ----------P~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y 227 (370)
T COG5276 161 ----------PQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAY 227 (370)
T ss_pred ----------ceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeE
Confidence 22222211 23334467788888877777 99999999876432 22222 22367788887776 5
Q ss_pred EEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEE-EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 499 FAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 499 l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l-~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
++.. +--+.+-|..+.+....+-. .+..+.++ .+.-.+++...+..+.-+.+-|+.+.. -. +..++-..
T Consensus 228 ~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~------sp-fl~ss~~t 298 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP------SP-FLSSSLDT 298 (370)
T ss_pred EEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC------CC-chhccccC
Confidence 4443 33466677665543333311 11222222 222235666666666677777776621 11 11111100
Q ss_pred CC-CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 577 TT-IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 577 ~~-~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.+ .-..+..+ +.++.........+.|....+...... +....+.+.+.+-+.+.+.+...++.+.||+.
T Consensus 299 ~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~--g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 299 AGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRP--GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred CCccccceEEe--cCeeEeccCCceEEEeCCChhhccccc--CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 01 12223222 333333322234444443322221111 11233344445555668888888898989875
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.11 E-value=43 Score=36.36 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=82.0
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCc--ceeeeecCCCCCCCcEEEEEEec----CCCEEEEEeCCCcEEEeecCCCccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPS--ECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~--~~~~~~l~~~gh~~~V~~v~fsp----dg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
+...|++|+..|.+||++........ ...... -..+|-.++.-+ .....++.=.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-----cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 46789999999999999996432111 112222 467888887643 1222333344567777776322110
Q ss_pred cccccccceeeEecCCCCeeEeecccCCC--CCCeeEEEEe------C-cEEEEee-CCEEEEEEcCCceEEEEEcCCCC
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADP--KDSISCFALR------G-SHLFSAS-GGKISIFSLETFQTLATFANPPP 486 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h--~~~V~~l~~s------~-~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~ 486 (730)
...|...+....-.| ......+++- + .+|.+-+ ||.+.+++-+.....+.+.. .-
T Consensus 111 --------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 111 --------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred --------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 001110000000012 1222233332 2 3455556 99999999877655555543 11
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEec
Q 004789 487 IATYFILLPQD-LFAFGFDDSSILVHCP 513 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs~dg~I~iwd~ 513 (730)
-...+.+.+.. .|++++.+..+..|..
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 12245666666 8888888888888864
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.94 E-value=0.057 Score=57.17 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=91.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee
Q 004789 386 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 463 (730)
Q Consensus 386 ~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s 463 (730)
...|-|.+.-++.++.+..+..||-..... .. .........++|. +..++...
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~---------------------le----~n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVI---------------------LE----LNPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhccee---------------------cc----cCCchhHhhhhhccccchhhhhh
Confidence 345667666688888888888887543322 00 0244555677888 55544444
Q ss_pred --CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 464 --GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 464 --dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
.+.+.+||+.+....+-=.+....-.-+.|++.+ .++.|...|.+.+++..+.+.+-..-.|..+++++++.+.+.
T Consensus 94 ek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~- 172 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY- 172 (615)
T ss_pred hcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-
Confidence 7999999997543211111111222237888888 899999999999999877765555544899999999999774
Q ss_pred EEEEeCCCcEE
Q 004789 541 LVSSGADAQLC 551 (730)
Q Consensus 541 l~s~s~dg~I~ 551 (730)
.+.++.|..+.
T Consensus 173 vil~dcd~~L~ 183 (615)
T KOG2247|consen 173 VILCDCDNTLS 183 (615)
T ss_pred eeecCcHHHHH
Confidence 44555555443
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.54 E-value=43 Score=35.72 Aligned_cols=191 Identities=11% Similarity=0.028 Sum_probs=104.0
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEe----CCCCE--EEEEe-CC---CcEEEEEcCC--Cceeccee
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNV--LVSSG-AD---AQLCVWDAVG--WKKLCSKF 565 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s----pd~~~--l~s~s-~d---g~I~vwd~~~--~~~~~~~~ 565 (730)
+++....++-+.+||+. |+.++.+. .+.++.+... -+|+. |+.++ .+ .+|++|.+.. +.. ..
T Consensus 70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L---~~ 143 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL---TD 143 (381)
T ss_dssp EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE---EE
T ss_pred eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc---eE
Confidence 67777788899999987 66667664 2455544432 23433 34443 22 4699997753 221 11
Q ss_pred ecc----cccCCCCCCCCeEEEEEe--c-CCcEEEE--EecCcEEEEeCC---CC----ceeeeecCCCCCCCeEEEEEe
Q 004789 566 LHS----FQTGLVPETTIVNHIQFH--P-DQIHLLS--IHEGQIDVYEAP---TL----NHTSQLVPDKMDLPITYATYS 629 (730)
Q Consensus 566 i~~----~~~~h~~~~~~v~~l~~s--p-dg~~l~~--s~dg~I~iwd~~---~~----~~~~~~~~~~h~~~v~~~~~s 629 (730)
+.. +..+. ..++.+|+- | +|.+.+. ..+|.+..|-+. ++ +.++.|.. ...+-.|+..
T Consensus 144 v~~~~~p~~~~~----~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVD 216 (381)
T PF02333_consen 144 VTDPAAPIATDL----SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVD 216 (381)
T ss_dssp -CBTTC-EE-SS----SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEE
T ss_pred cCCCCccccccc----ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEe
Confidence 110 11111 346777763 3 4554443 477887777653 33 35677765 5578889998
Q ss_pred cCCCEEEEEEcCCeEEEEECCCc--eEEEEeecccccCCCCcccceeeEEEEEecCCC-CE-EEEEeCCCcEEEEeCCCC
Q 004789 630 CDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP-NR-IALGLTNGRVHVIEPLES 705 (730)
Q Consensus 630 pdg~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~-~~-las~s~Dg~I~iWd~~~~ 705 (730)
....+|+.|-++--|.-|+.+.. .....+... ..++-...|-.+++-..+ ++ .+ |+|.=.+++..||+....
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~---~g~~l~aDvEGlaly~~~-~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA---DGDGLVADVEGLALYYGS-DGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB---SSSSB-S-EEEEEEEE-C-CC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccCCEEEecCccEEEEEecCCCCCCcceeeecc---cccccccCccceEEEecC-CCCeEEEEEcCCCCeEEEEecCCC
Confidence 88889999999988888887632 111111100 012223446644444344 33 34 445556789999998764
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=35 Score=34.56 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=90.1
Q ss_pred CCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCC-C-CCeEEEEEcCCC-eEEEEECCCcEEEEecCCC---ce
Q 004789 446 KDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANP-P-PIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KT 518 (730)
Q Consensus 446 ~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~-~-~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~---~~ 518 (730)
.+-+..+.+++++...+. +.-+++.|+.+...-..+..- . +--.++.. .| +..++..|.-+.+.|+.+. ..
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 455677788888888888 788999999876543332211 1 22334444 35 7777776666777887654 33
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecC
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 598 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg 598 (730)
...+.........++.+ |++-..+..|+-+.+.|+.... .+. +.+|-.....+.++..+++..+++....|
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~----sPv---li~~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH----SPV---LIGSYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC----CCe---EEEEEecCCceEEEEecCCeeEEEEcccc
Confidence 34444444545677776 6677777889999999998732 111 11111100357778777776665553332
Q ss_pred cEEEEeCCC
Q 004789 599 QIDVYEAPT 607 (730)
Q Consensus 599 ~I~iwd~~~ 607 (730)
+.+-|..+
T Consensus 235 -vlivd~s~ 242 (370)
T COG5276 235 -VLIVDVSG 242 (370)
T ss_pred -eEEEecCC
Confidence 44445443
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.12 E-value=24 Score=34.20 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=67.6
Q ss_pred EEEEecCCcEEEEEecCcEEEEeCC--CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---C---eEEEE---ECC
Q 004789 582 HIQFHPDQIHLLSIHEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---G---HVKVF---DTS 650 (730)
Q Consensus 582 ~l~~spdg~~l~~s~dg~I~iwd~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g---~I~iw---d~~ 650 (730)
.++-++.+..+++...+.|.+|++. ..+.+.++.. -+.|..+.++..|+||++--++ . .+|+| +..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 3343332333344577789999987 3445666654 6889999999999999986554 2 55664 322
Q ss_pred --CceEEE-EeecccccCCCCc--ccce---------eeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 651 --TLELRC-QINLTAYAQPGTI--SLEL---------YPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 651 --~~~~~~-~~~~~~~~~~gh~--~~~v---------~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
...++. ++..+...++... .... .+.+++-.|..|+.++.+ ++++.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 222222 2221111000000 0000 134778888777766654 568999988654
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.96 E-value=21 Score=36.75 Aligned_cols=149 Identities=15% Similarity=0.044 Sum_probs=77.2
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-----cEEEEE--ecCcEEEEeCCCCceeeeecCCCC--
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKM-- 619 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg-----~~l~~s--~dg~I~iwd~~~~~~~~~~~~~~h-- 619 (730)
.|.+||+.+.+......+........ +.+..+.+.... .+++.+ ..+.|.++|+.+++..+.....-.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~---s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPD---SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TC---GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred EEEEEECCCCcEEEEEECChHHcccc---cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence 68889999877655544442111111 577888887732 344444 445799999999876655432110
Q ss_pred ---------------CCCeEEEEEec---CCCEEEEEEcCCeEEEEECCCceEE-----EEe-ecccccCCCCcccceee
Q 004789 620 ---------------DLPITYATYSC---DGKCIYVSCKSGHVKVFDTSTLELR-----CQI-NLTAYAQPGTISLELYP 675 (730)
Q Consensus 620 ---------------~~~v~~~~~sp---dg~~l~sgs~dg~I~iwd~~~~~~~-----~~~-~~~~~~~~gh~~~~v~~ 675 (730)
...+..++.+| +|++|+-+...+. ++|.+.+.-+. ... ....+...|.......
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~- 189 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD- 189 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC-
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCc-
Confidence 12244555544 4555554443321 22332211000 000 0000001121111223
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
+++.++ +|.++.+--..+.|..|+...
T Consensus 190 -g~~~D~-~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 190 -GMAIDP-NGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -EEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred -eEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence 778888 788888888999999999986
No 474
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=28 Score=37.34 Aligned_cols=105 Identities=10% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEE
Q 004789 524 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 603 (730)
Q Consensus 524 ~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iw 603 (730)
...++|.++.|++|.+.+|+--.+++|.+++....+.... ..+ ..+... ..|...+|+.+ .-+|.-.+..+.+|
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~-~~~-~ck~k~---~~IlGF~W~~s-~e~A~i~~~G~e~y 137 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE-YTQ-ECKTKN---ANILGFCWTSS-TEIAFITDQGIEFY 137 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-HHH-HhccCc---ceeEEEEEecC-eeEEEEecCCeEEE
Confidence 3567999999999999999999999999999854321111 111 111111 45889999876 55555455556666
Q ss_pred eCCCC-ceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 604 EAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 604 d~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
-.... +.++... .+...|.-..|.++-+.++
T Consensus 138 ~v~pekrslRlVk--s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 138 QVLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred EEchhhhhhhhhh--hcccCccEEEEccccceEe
Confidence 54332 2222222 2466677777777776544
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=8.2 Score=46.59 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=89.5
Q ss_pred EECCCcEEEEecCCCceEEEEcCCCCCeEEEEE--------eCCCCEEEEEeCCCcEEEEEcCCCceecceee-ccc-cc
Q 004789 502 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL-HSF-QT 571 (730)
Q Consensus 502 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~--------spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i-~~~-~~ 571 (730)
.+.|+.+.+|+.+++.....+.+....|..+.. -|.=++++..+.--.|.++-+.-.+......+ .+. .-
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 356889999999998777777776666666543 22223444444445566654432111000000 000 00
Q ss_pred CCCCCCCCeEEEEEecCCcEEEEEecCcEEEE--eCCCC---c-ee----------------eeecCCCCCCCeEEEEEe
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY--EAPTL---N-HT----------------SQLVPDKMDLPITYATYS 629 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iw--d~~~~---~-~~----------------~~~~~~~h~~~v~~~~~s 629 (730)
+-.+ ..|.++....+|+.+++|.||.|+=. ....+ + +- -.+. +.+..+|..++..
T Consensus 175 ~~dg--~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDG--VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITID 251 (1311)
T ss_pred ecCC--ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEec
Confidence 0111 46889998899999999988855422 22111 1 10 0111 1347789999998
Q ss_pred cCCCEEEEEEcCCeEEEEECCC
Q 004789 630 CDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 630 pdg~~l~sgs~dg~I~iwd~~~ 651 (730)
..-..+++-++.|+|.+|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999987
No 476
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.52 E-value=0.8 Score=52.27 Aligned_cols=162 Identities=9% Similarity=0.055 Sum_probs=92.0
Q ss_pred CCCCCeeEEEEe-Cc--EEEEee-CCEEEEEEcC--CceEEEEE-----cCCCCCeEEEEEcC---CC-eEEEEECCCcE
Q 004789 444 DPKDSISCFALR-GS--HLFSAS-GGKISIFSLE--TFQTLATF-----ANPPPIATYFILLP---QD-LFAFGFDDSSI 508 (730)
Q Consensus 444 ~h~~~V~~l~~s-~~--~l~s~s-dg~I~vwd~~--t~~~~~~~-----~~~~~~v~~i~~sp---dg-~l~sgs~dg~I 508 (730)
+..+.|..+.|. .+ .+. . -|...|||+. .|+....+ ......+.-+.|.| +. ++..+-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 566777777776 11 122 3 4778888875 34433222 22233444555554 44 77888888888
Q ss_pred EEEecCCCceEEEEcCCCCCeEEEE-----------EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCC
Q 004789 509 LVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 577 (730)
Q Consensus 509 ~iwd~~~~~~~~~~~~h~~~V~~l~-----------~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~ 577 (730)
++.++..... ..+.+|...+..++ .+|||..+++++.||.+++|.+.-.-.....++. ..+.|..
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh-ewkphd~-- 283 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH-EWKPHDK-- 283 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh-ccCCCCC--
Confidence 8877654322 33455766665543 5899999999999999999977532222223333 2334431
Q ss_pred CCeEEEEEecC-------CcE--EEEE--ecCcEEEEeCCCCcee
Q 004789 578 TIVNHIQFHPD-------QIH--LLSI--HEGQIDVYEAPTLNHT 611 (730)
Q Consensus 578 ~~v~~l~~spd-------g~~--l~~s--~dg~I~iwd~~~~~~~ 611 (730)
.+-.|.-|+.+ +.+ ++++ .+..+++|.-...+|+
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 22222223332 222 3333 3355889987776665
No 477
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.27 E-value=4.1 Score=40.11 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=48.5
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEe-ecccccCC----C-CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 628 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQI-NLTAYAQP----G-TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 628 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~~~----g-h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
+..++.+|++-+.+|.+++||+.+++.+..- ...+.... + .....|. .+..+. +|.-+++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~--~~~lt~-~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNIT--SCSLTS-NGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEE--EEEEcC-CCCEEEEEe-CCCEEEec
Confidence 4467889999999999999999998765433 11111110 0 1133455 666676 677777665 57889998
Q ss_pred CCCC
Q 004789 702 PLES 705 (730)
Q Consensus 702 ~~~~ 705 (730)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 8644
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.21 E-value=77 Score=36.35 Aligned_cols=165 Identities=11% Similarity=0.175 Sum_probs=89.2
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec------CCcEEEE-Ee-
Q 004789 525 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLS-IH- 596 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp------dg~~l~~-s~- 596 (730)
-.+.|..+.|.++++.+++....|.|.+||...+....... ....+.. .-+.+ +|-+ ...++++ +.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~---l~~~~~~--~v~ys-~fv~~~~~~~~~~~ll~v~~~ 201 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ---LKLKSSI--NVSYS-KFVNDFELENGKDLLLTVSQL 201 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc---ccccccc--ceehh-hhhcccccccCCceEEEEEEc
Confidence 35789999999999999999999999999994322111111 1112210 11112 2222 2334444 43
Q ss_pred cC---cEEEEeC--CCCceeeeec-CCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc
Q 004789 597 EG---QIDVYEA--PTLNHTSQLV-PDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 597 dg---~I~iwd~--~~~~~~~~~~-~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
++ ..+++.+ .+.. +..+. ...+........|.- +|. |+.- .++.|.+|++..-+....+....+.....
T Consensus 202 ~~~k~~ykL~~l~~~~~~-~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~- 277 (670)
T PF10395_consen 202 SNSKLSYKLISLSNESSS-IFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES- 277 (670)
T ss_pred CCCcEEEEEEEeccCCcc-eEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhcccc-
Confidence 32 3678877 2222 22222 001133333444443 444 4433 68899999999988888887654443221
Q ss_pred ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 670 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 670 ~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
.. + +++.|...+.+.-+ .+++|++.|+.-.
T Consensus 278 ~~-~----vSl~~~s~nRvLLs-~~nkIyLld~~~~ 307 (670)
T PF10395_consen 278 DD-L----VSLKPPSPNRVLLS-VNNKIYLLDLKFE 307 (670)
T ss_pred cc-c----eEeecCCCCeEEEE-cCCEEEEEeehhh
Confidence 11 2 23332234444443 4678999998643
No 479
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.10 E-value=2.7 Score=29.09 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCC
Q 004789 527 NRITCLAYSLSL---NVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 527 ~~V~~l~~spd~---~~l~s~s~dg~I~vwd~~~ 557 (730)
+.|.++.|+|+. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999995
No 480
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.87 E-value=56 Score=34.46 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=114.1
Q ss_pred eeEEEEe--CcEEEEeeCCEEEEEEcCCceE---EEEEc----CCCCCeEEEEEcCC----CeEEEEEC-C--------C
Q 004789 449 ISCFALR--GSHLFSASGGKISIFSLETFQT---LATFA----NPPPIATYFILLPQ----DLFAFGFD-D--------S 506 (730)
Q Consensus 449 V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~---~~~~~----~~~~~v~~i~~spd----g~l~sgs~-d--------g 506 (730)
-+.|+|. |+.+++-..|.|++++ ..+.. +..+. ........++++|+ +.|++... . .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 4678888 5555554499999999 44443 33332 23457789999995 43332222 1 2
Q ss_pred cEEEEecCCC-------c-eEEEEcC---CCCCeEEEEEeCCCCEEEEEeCCC-------------cEEEEEcCCCceec
Q 004789 507 SILVHCPCTK-------K-TKAKLKG---HQNRITCLAYSLSLNVLVSSGADA-------------QLCVWDAVGWKKLC 562 (730)
Q Consensus 507 ~I~iwd~~~~-------~-~~~~~~~---h~~~V~~l~~spd~~~l~s~s~dg-------------~I~vwd~~~~~~~~ 562 (730)
.|.-|....+ + .+..+.. .......|+|.|||.+.++.+..+ .|.-.+... +...
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 3444444333 1 1112222 223456799999997666655432 233333322 1000
Q ss_pred ceee--------cccccCCCCCCCCeEEEEEecC-CcEEEE--EecCcEEEEeCCCCc----------------------
Q 004789 563 SKFL--------HSFQTGLVPETTIVNHIQFHPD-QIHLLS--IHEGQIDVYEAPTLN---------------------- 609 (730)
Q Consensus 563 ~~~i--------~~~~~~h~~~~~~v~~l~~spd-g~~l~~--s~dg~I~iwd~~~~~---------------------- 609 (730)
..+. .....|+. ....++|+|. |+..++ +.++.=.|.-+..+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlR----N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR----NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S----EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCCC----ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0000 10122332 3567999998 777766 343322222222211
Q ss_pred -------eeeeecCCCCCCCeEEEEEec-------CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 610 -------HTSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 610 -------~~~~~~~~~h~~~v~~~~~sp-------dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
++..+ .+...+..+.|.. .|.++++.-..+.|....+..+..+..... +. +.....+.
T Consensus 238 ~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~--~~~~~r~~- 309 (331)
T PF07995_consen 238 SCPGFVPPVFAY---PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL--GGFGGRPR- 309 (331)
T ss_dssp S-TTS---SEEE---TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC--TTSSS-EE-
T ss_pred CCCCcCccceee---cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc--ccCCCCce-
Confidence 11111 1235566677753 455666666667888888775533222111 11 11122345
Q ss_pred EEEEEecCCCCEEEEEeCCCcEE
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVH 698 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~ 698 (730)
.+++.| ||.++++.+.+|.|.
T Consensus 310 -~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 -DVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEET-TSEEEEEE-TTTTEE
T ss_pred -EEEEcC-CCeEEEEECCCCeEe
Confidence 999999 898888888888774
No 481
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.79 E-value=1.8 Score=49.50 Aligned_cols=154 Identities=12% Similarity=0.153 Sum_probs=81.9
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCC---CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEec
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFG---GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ 430 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~---~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~ 430 (730)
|..-+|+++-....-++.....+...-. ..|.-+-|-++.-++..+-+++.|++.++.+...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--------------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--------------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------
Confidence 6778899874221112211111111112 2333334445666777777788888765433221
Q ss_pred CCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcE
Q 004789 431 PSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSI 508 (730)
Q Consensus 431 ~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I 508 (730)
.++. +|..++..++|- ..++... ..+||| .++++..||.+
T Consensus 218 ----~l~r-----sHs~~~~d~a~~~~g~~~l~-----------------------------~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 218 ----SLFR-----SHSQRVTDMAFFAEGVLKLA-----------------------------SLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred ----HHHH-----hcCCCcccHHHHhhchhhhe-----------------------------eeCCCCcEEEEeecCCcc
Confidence 1211 488888777765 3332211 167888 88888888877
Q ss_pred EEEec-----CCCceEEEEcCCCC-CeEEEEEeCCC---------CEEEEEeC-CCcEEEEEcCCCce
Q 004789 509 LVHCP-----CTKKTKAKLKGHQN-RITCLAYSLSL---------NVLVSSGA-DAQLCVWDAVGWKK 560 (730)
Q Consensus 509 ~iwd~-----~~~~~~~~~~~h~~-~V~~l~~spd~---------~~l~s~s~-dg~I~vwd~~~~~~ 560 (730)
+.|-+ ..-.++..++.|.+ +-.|.-|+.+- .++++++. ...+++|....+++
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 66653 33356666777763 32333333221 23444443 45688998877544
No 482
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.54 E-value=4.1 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCeEEEEEecCC---CEEEEEEcCCeEEEEECCC
Q 004789 621 LPITYATYSCDG---KCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 621 ~~v~~~~~spdg---~~l~sgs~dg~I~iwd~~~ 651 (730)
+.+.++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4777777779999999985
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.91 E-value=7.5 Score=36.65 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.3
Q ss_pred ceeeEEEEEecCC-----CCEEEEEeCCCcEEEEeCCCC-ceeeecc
Q 004789 672 ELYPLVIAAHPLE-----PNRIALGLTNGRVHVIEPLES-EVEWGKL 712 (730)
Q Consensus 672 ~v~~~~v~~sp~~-----~~~las~s~Dg~I~iWd~~~~-~~~w~~~ 712 (730)
.+. +++|||.. +.+||+.+.+|.|.||..... ...|...
T Consensus 87 ~vv--~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v 131 (173)
T PF12657_consen 87 QVV--SAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRV 131 (173)
T ss_pred cEE--EEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeee
Confidence 355 99999932 247999999999999999876 6667653
No 484
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.75 E-value=58 Score=33.80 Aligned_cols=234 Identities=11% Similarity=-0.039 Sum_probs=111.9
Q ss_pred CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCC--EE
Q 004789 392 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG--KI 467 (730)
Q Consensus 392 dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg--~I 467 (730)
++++|+.|+.+|...+. +.... +...+. .+...|.++... -+.|++-+|+ .+
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~-------------------~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQP-------------------GTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQL 67 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCC-------------------CCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence 34689999988865543 32210 111111 356789999988 5556665554 49
Q ss_pred EEEEcCCceE---------------EEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC----ceEEEE---c
Q 004789 468 SIFSLETFQT---------------LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKL---K 523 (730)
Q Consensus 468 ~vwd~~t~~~---------------~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~----~~~~~~---~ 523 (730)
+.+++..-.. ....-.+..+...+.+.... .++++....+|.++..... ...+.+ .
T Consensus 68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~ 147 (302)
T smart00036 68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFP 147 (302)
T ss_pred EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccccc
Confidence 9999843221 01122344433333433322 3444455566666543221 111111 0
Q ss_pred -CCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCC--CceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecC
Q 004789 524 -GHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 598 (730)
Q Consensus 524 -~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~--~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg 598 (730)
.-..++..+..+++ ...+..|+..+...++++.. ... ....+........ ....++..-+++ .++.+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~-~d~sl~~~~~~~~---~~p~~i~~l~~~-e~Llc~~~ 222 (302)
T smart00036 148 LISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSK-EDLSLPFLSEETS---LKPISVVQVPRD-EFLLCYDE 222 (302)
T ss_pred CCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccc-ccccccccccccc---cCceEEEEECCC-eEEEEECc
Confidence 11233434433433 44666676543344555533 100 0011110001000 022233333344 44445555
Q ss_pred cEEEEeCCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 599 QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 599 ~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
...+.|.. | +..+.... .-.....++++. ..+|++-. +..|.|+++.+++.++.+.
T Consensus 223 ~~v~Vn~~-G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 223 FGVFVNLY-GKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred EEEEEeCC-CCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 55566653 3 22111111 014455677776 35666665 4559999999999888875
No 485
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.34 E-value=28 Score=39.90 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=55.0
Q ss_pred CeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEE
Q 004789 528 RITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 602 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~i 602 (730)
.-..+.|-|.|..+++-..|| .|.++.-+.-+ .+.. . +..+.. ..+..++|+-....++++..+.+.+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr--HGef-~-lr~~~d---Ek~~~~~wn~~s~vlav~~~n~~~l 320 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR--HGEF-D-LRVGCD---EKAFLENWNLLSTVLAVAEGNLLKL 320 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcc--cCCc-c-ccCCch---hhhhhhhhhHHHHHHHHhhcceEEE
Confidence 334578999999999877655 35555544311 1111 0 111111 3466778887777777778889999
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 603 YEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
|-..+-...-.. ...-..+.-+.|+|..
T Consensus 321 wttkNyhWYLK~--e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 321 WTTKNYHWYLKV--ERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEccceEEEEEE--eecCCCcceeeecccc
Confidence 986554322111 1123445566777643
No 486
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=77 Score=34.81 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=47.6
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEe---------cCCCceE---EEE-------c-CCCCCeEEEEEeCCC---CEEE
Q 004789 487 IATYFILLPQD-LFAFGFDDSSILVHC---------PCTKKTK---AKL-------K-GHQNRITCLAYSLSL---NVLV 542 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs~dg~I~iwd---------~~~~~~~---~~~-------~-~h~~~V~~l~~spd~---~~l~ 542 (730)
.|..+..++.| .++-.+.+|.+.++= +++|+.. +++ . ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999 888888888665542 1233221 111 0 111235578899975 5777
Q ss_pred EEeCCCcEEEEEcCCC
Q 004789 543 SSGADAQLCVWDAVGW 558 (730)
Q Consensus 543 s~s~dg~I~vwd~~~~ 558 (730)
.-+.|..|++||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 7888999999999874
No 487
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.94 E-value=41 Score=38.67 Aligned_cols=127 Identities=12% Similarity=0.136 Sum_probs=68.2
Q ss_pred CeEEEEEecCCcEEEE-EecCc-----EEEEeCCCCceeeee--cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 579 IVNHIQFHPDQIHLLS-IHEGQ-----IDVYEAPTLNHTSQL--VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~-s~dg~-----I~iwd~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
.-..+.|-|.|..+++ +.||. +..+.. +|-.-..+ .. +....+...+|.-....++.+ ..+.|.+|-..
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 3446899999999998 55542 555553 22111111 11 124445666776555544444 56789999876
Q ss_pred CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCCCCCcc
Q 004789 651 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSRE 719 (730)
Q Consensus 651 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~~~~~~ 719 (730)
+..-- +....+ -..+. -+.|||...+.+... +.+.|..-.+......-+...|.++|.
T Consensus 325 NyhWY--LK~e~~------ip~~s--~vkwhpe~~nTl~f~-d~~~I~~V~f~~k~~~~~s~~p~d~g~ 382 (1243)
T COG5290 325 NYHWY--LKVERQ------IPGIS--YVKWHPEEKNTLLFR-DGERILRVFFSEKKTHHGSEYPFDNGT 382 (1243)
T ss_pred ceEEE--EEEeec------CCCcc--eeeeccccCcEEEEe-cCCeEEEEEeehhhhcCCcccCccCCc
Confidence 64322 111111 11134 689999555555544 345565555554444444555556664
No 488
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.64 E-value=73 Score=38.62 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=80.5
Q ss_pred CEEEEEeC---------CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeC
Q 004789 394 DFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASG 464 (730)
Q Consensus 394 ~~L~s~s~---------dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sd 464 (730)
.||++|.. -|.+.|+|+-.-- |..-.+.+...++....+..+++|..++=-..+|+++..
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVV-----------PepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~G 1115 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVV-----------PEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQG 1115 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEec-----------CCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccC
Confidence 37888764 2788888863210 001112222233333333567888877766778888889
Q ss_pred CEEEEEEcCCc-eEEEE-EcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCc-eEEEEcC--CCCCeEEEEEeCCCC
Q 004789 465 GKISIFSLETF-QTLAT-FANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLKG--HQNRITCLAYSLSLN 539 (730)
Q Consensus 465 g~I~vwd~~t~-~~~~~-~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~-~~~~~~~--h~~~V~~l~~spd~~ 539 (730)
..|.+|+++.. ..+.. |-...--+.++..-.+ +|+.|.--..|.+......- .+.-+.. ..-.+.++.|--||.
T Consensus 1116 qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vkn-lIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~ 1194 (1366)
T KOG1896|consen 1116 QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKN-LILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS 1194 (1366)
T ss_pred cEEEEEEeccCCcceeeEEeccceeEEehhhhhh-heehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC
Confidence 99999999533 22211 1111111111111111 55555555566665544332 1222211 234577888877775
Q ss_pred --EEEEEeCCCcEEEEEcC
Q 004789 540 --VLVSSGADAQLCVWDAV 556 (730)
Q Consensus 540 --~l~s~s~dg~I~vwd~~ 556 (730)
.++++..|+.|++|-..
T Consensus 1195 ~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1195 NLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eeEEEEEcCCCcEEEEEeC
Confidence 46777889999887554
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.19 E-value=35 Score=37.51 Aligned_cols=54 Identities=15% Similarity=-0.009 Sum_probs=37.6
Q ss_pred CeEEEEEecCCcEEEEEe-cCcEEEEeCCCCce--eeeec---CCCCCCCeEEEEEecCC
Q 004789 579 IVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG 632 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s~-dg~I~iwd~~~~~~--~~~~~---~~~h~~~v~~~~~spdg 632 (730)
..+.|+|.|||+.|++-. .|.|++++-.++.. +..+. ..........++++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 567999999998888876 69999998655432 21111 11125778999999874
No 490
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.38 E-value=28 Score=37.88 Aligned_cols=142 Identities=12% Similarity=0.090 Sum_probs=86.3
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC-------EEEEEeCCCcEEEEEcCCCc-eecceeeccc
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-------VLVSSGADAQLCVWDAVGWK-KLCSKFLHSF 569 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~-------~l~s~s~dg~I~vwd~~~~~-~~~~~~i~~~ 569 (730)
.+..|+....++-.|++-|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+-.- ........ -
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK-d 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK-D 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-h
Confidence 4556666678888999999999999877664 566777532 22345556666666765421 10000001 0
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
..+. ....+..-..+| ++++ +..|-|++||.- |..-++..+ +-+..|..+..+.+|+++++.+. ..+.+-|
T Consensus 559 Y~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRi-g~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 559 YKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRI-GKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred cccc----ccccccccccCc-eEEEecCCCceeeehhh-cchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 0111 123344444445 5555 688999999963 333333322 34788999999999999988774 5666777
Q ss_pred CC
Q 004789 649 TS 650 (730)
Q Consensus 649 ~~ 650 (730)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.64 E-value=85 Score=33.55 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=108.3
Q ss_pred cCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEE------EeCcE--EEEe
Q 004789 391 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA------LRGSH--LFSA 462 (730)
Q Consensus 391 pdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~------~s~~~--l~s~ 462 (730)
|...+++...+++-+.+||++...... .. .+..+.+. +.|+. |+.+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~-------------~~-------------~Gr~NNVDvrygf~l~g~~vDlava 119 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQS-------------LP-------------VGRPNNVDVRYGFPLNGKTVDLAVA 119 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEE-------------E--------------SS-EEEEEEEEEEEETTEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEe-------------ec-------------CCCcceeeeecceecCCceEEEEEE
Confidence 455677788888999999987665411 01 12222222 22333 4555
Q ss_pred e--C---CEEEEEEcC--CceEEEEEcC-------CCCCeEEEEE--cC-CC--eEEEEECCCcEEEEecC---CC----
Q 004789 463 S--G---GKISIFSLE--TFQTLATFAN-------PPPIATYFIL--LP-QD--LFAFGFDDSSILVHCPC---TK---- 516 (730)
Q Consensus 463 s--d---g~I~vwd~~--t~~~~~~~~~-------~~~~v~~i~~--sp-dg--~l~sgs~dg~I~iwd~~---~~---- 516 (730)
+ + .+|++|.+. ++. +..+.. ....+..+++ ++ +| ++++...+|.+..|-+. .+
T Consensus 120 s~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~ 198 (381)
T PF02333_consen 120 SDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA 198 (381)
T ss_dssp EE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE
T ss_pred ecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee
Confidence 5 2 468898764 443 333321 1223556665 44 45 77778889988777664 33
Q ss_pred ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--CC-cEEE
Q 004789 517 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQ-IHLL 593 (730)
Q Consensus 517 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--dg-~~l~ 593 (730)
+.++.|.. .+.+-.|+.......|+.+-.+.-|.-|+.+.........+......+- ...|-.+++-. ++ .||+
T Consensus 199 ~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l--~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 199 TLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGL--VADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp EEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB---S-EEEEEEEE-CCC-EEEE
T ss_pred EEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccc--ccCccceEEEecCCCCeEEE
Confidence 45677764 4578899999888899999999888888876432222222321111111 14677777753 43 3666
Q ss_pred E-E-ecCcEEEEeCCC-Cceeeee
Q 004789 594 S-I-HEGQIDVYEAPT-LNHTSQL 614 (730)
Q Consensus 594 ~-s-~dg~I~iwd~~~-~~~~~~~ 614 (730)
+ + .+++..+|+... ...+..|
T Consensus 276 vSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEcCCCCeEEEEecCCCCcccceE
Confidence 6 4 677899999864 3444444
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.71 E-value=72 Score=32.13 Aligned_cols=192 Identities=13% Similarity=0.009 Sum_probs=116.1
Q ss_pred eEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEE-EE--
Q 004789 450 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KL-- 522 (730)
Q Consensus 450 ~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~-~~-- 522 (730)
..++-. |..-+++. .+.|--.|..+|+....--+....-..+..-||| .-++-+.. .|.-.|.++.+... .+
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc
Confidence 344555 55566666 6777778888888776655555566678888998 33332222 56666766554322 11
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 004789 523 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 601 (730)
Q Consensus 523 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~ 601 (730)
+..........|.+.|+.-+++... .---.|..++. ..+.....+ ..-+.|+..|||..-+++ .++.|-
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~----i~vfpaPqG-----~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNV----ISVFPAPQG-----GGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ccCCCcccceeeCCCccEEEeeccc-cceecCcccCc----eeeeccCCC-----CCCcceEECCCCcEEEEeccccceE
Confidence 2234567788899999888887532 11111222210 011101222 356789999999998886 777788
Q ss_pred EEeCCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 602 VYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
..|..++..- .+... ........+--+|.|+.-++....+.++-||-.+..
T Consensus 214 ridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 214 RIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 8887766332 23221 113444556667888888887778888888876543
No 493
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.50 E-value=1.1e+02 Score=36.76 Aligned_cols=178 Identities=14% Similarity=0.037 Sum_probs=98.1
Q ss_pred cEEEEecCCCceEEEEcCC----CCCeEEEEEeCCCC--EEEEEeC-----------CCcEEEEEcCCCceecceeeccc
Q 004789 507 SILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLN--VLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSF 569 (730)
Q Consensus 507 ~I~iwd~~~~~~~~~~~~h----~~~V~~l~~spd~~--~l~s~s~-----------dg~I~vwd~~~~~~~~~~~i~~~ 569 (730)
.|++.|..+++.+..+.-. .-.+.++.|+.... ++++|.. +|.++.|++-.... ....++
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh-- 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLH-- 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeee--
Confidence 4888888888776655421 22455666665333 2333321 34466665532110 011111
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE--EE
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK--VF 647 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~--iw 647 (730)
++.-.+.| .+..|-+.++++|-...+++||+-..++++......-...|+++++. +..+++|...-.|. .|
T Consensus 931 ---~T~~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 931 ---KTEIPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred ---ccCCCccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEE
Confidence 11000233 45667677888888899999999887777665443225556666653 56777776654444 56
Q ss_pred ECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 648 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 648 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+....+++...... -...|. ++.+- |...+|.|..=|.+.+-.+...
T Consensus 1004 ~~~~n~l~~fadD~-------~pR~Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDP-------VPRHVT--ALELL--DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ecCCCeEEEEeCCC-------ccceee--EEEEe--cCCceeeccccCcEEEEECCCc
Confidence 66555544433210 011233 33332 5667888877788877776544
No 494
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=78.61 E-value=86 Score=32.40 Aligned_cols=106 Identities=10% Similarity=-0.095 Sum_probs=58.8
Q ss_pred EEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC
Q 004789 510 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 510 iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg 589 (730)
++|+.+++.+..=- ....+..|+ +|++.++-+..|.+.-+|.++|+......+. +....++|. |
T Consensus 189 vidv~s~evl~~GL---smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vp----------G~~rGL~f~--G 252 (335)
T TIGR03032 189 VIDIPSGEVVASGL---SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP----------GFTRGLAFA--G 252 (335)
T ss_pred EEEeCCCCEEEcCc---cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECC----------CCCccccee--C
Confidence 45666665543211 112233454 5777788888899999999876532221122 456788887 7
Q ss_pred cEEEEEe-----c----------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC
Q 004789 590 IHLLSIH-----E----------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 590 ~~l~~s~-----d----------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd 631 (730)
.++++|. + ..|.+.|+++|..+..+.-.+.-..+..++.-|+
T Consensus 253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 7777641 1 1245556666665555544333444455555443
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.34 E-value=40 Score=33.65 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=77.0
Q ss_pred EEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-C--CcEEEEecCCC--ce-EE----EEcCCCCCeEEEEEe
Q 004789 467 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D--SSILVHCPCTK--KT-KA----KLKGHQNRITCLAYS 535 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-d--g~I~iwd~~~~--~~-~~----~~~~h~~~V~~l~~s 535 (730)
-.+||+.+++....-.....-..+-++.+|| .+.+|+. + ..+++++.... .+ .. .+. ....--++..-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 3578888876543222223333455678999 8887765 3 26888886541 11 11 111 22333455667
Q ss_pred CCCCEEEEEeCCC-cEEEEEcCCCc--eecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 004789 536 LSLNVLVSSGADA-QLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 536 pd~~~l~s~s~dg-~I~vwd~~~~~--~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~ 612 (730)
|||+.|+.|+... +..+|.-.... ......+......... .---.+...|+|+.++.+..+ -.|||..+.+.++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~--nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPN--NLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcc--ccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEe
Confidence 8999999988764 34444432210 0000011100000000 112256778999998887544 4566888777666
Q ss_pred eec
Q 004789 613 QLV 615 (730)
Q Consensus 613 ~~~ 615 (730)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 664
No 496
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.93 E-value=7.7 Score=26.29 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.3
Q ss_pred cCCcEEEEE--ecCcEEEEeCCCCceeeeecC
Q 004789 587 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 587 pdg~~l~~s--~dg~I~iwd~~~~~~~~~~~~ 616 (730)
|++++|+++ .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 577878774 578999999999888887765
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.82 E-value=4.7 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeec
Q 004789 686 NRIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
..++.++.+|.+..+|..+|+.+|..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46778889999999999999999974
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.75 E-value=1.1e+02 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=25.6
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
...|.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 344899999988899999999999999999753
No 499
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.70 E-value=31 Score=39.89 Aligned_cols=149 Identities=12% Similarity=0.085 Sum_probs=90.3
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 423 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~ 423 (730)
-..+..|+.++.+.|+.-............. ..-...+.++.+++.. +..|.-||++-.+--...
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~~---spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~---------- 611 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEPP---SPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPS---------- 611 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccCC---CCchhhhhhhhccccc--cccCccCCccccccCCCC----------
Confidence 3455667788888888765211111111111 1134566777776643 566666777665432221
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCceEEEEEcC---CCCCeEEEEEcCCC-eE
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFAN---PPPIATYFILLPQD-LF 499 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~~~~~~~~~---~~~~v~~i~~spdg-~l 499 (730)
..||..-...+. .-..+|...++....++++++|.|.++...+......... |...|+++.....| ++
T Consensus 612 ---gSwd~ep~~~~~-----~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwv 683 (925)
T KOG3522|consen 612 ---GSWDGEPNISIP-----TGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWV 683 (925)
T ss_pred ---CCCCCCCccccc-----cCCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEE
Confidence 126654333332 2456788888887778777899999999988777666654 45689999999888 66
Q ss_pred EEEECCCcEEEEecCCC
Q 004789 500 AFGFDDSSILVHCPCTK 516 (730)
Q Consensus 500 ~sgs~dg~I~iwd~~~~ 516 (730)
+..+.| .++.++..+-
T Consensus 684 afasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 684 AFASGD-EERLFHTETL 699 (925)
T ss_pred EEcCCC-EEEEeccccc
Confidence 665544 4555554443
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.88 E-value=36 Score=33.99 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=76.4
Q ss_pred EEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC-C--CcEEEEEcCCCceecc--eeecccccCCCCCCCCeEE
Q 004789 508 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D--AQLCVWDAVGWKKLCS--KFLHSFQTGLVPETTIVNH 582 (730)
Q Consensus 508 I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d--g~I~vwd~~~~~~~~~--~~i~~~~~~h~~~~~~v~~ 582 (730)
-.+||+.+++....-........+-++.+||++|.+|+. + ..+++++.......+. .....+..+ ..--.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-----RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-----RWYPT 122 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-----Ccccc
Confidence 357888887553221112222333457889999998875 2 3588887654100000 000101111 23335
Q ss_pred EEEecCCcEEEEE-ec-CcEEEEeCCC--Cceee-eecCC----CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 583 IQFHPDQIHLLSI-HE-GQIDVYEAPT--LNHTS-QLVPD----KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 583 l~~spdg~~l~~s-~d-g~I~iwd~~~--~~~~~-~~~~~----~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
...-|||+.|++| .. ....+|.-.. ..... .+... .....--.+...|||++++.+..++ .|||..+.+
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 6667899999985 33 3455665422 11111 11100 0012222455569999999887655 457888887
Q ss_pred EEEEee
Q 004789 654 LRCQIN 659 (730)
Q Consensus 654 ~~~~~~ 659 (730)
.+..+.
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 666654
Done!