Query 004789
Match_columns 730
No_of_seqs 799 out of 3946
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.1E-45 3.9E-50 403.8 39.8 280 379-703 106-410 (410)
2 1nr0_A Actin interacting prote 100.0 3.3E-43 1.1E-47 404.6 45.2 349 338-706 65-569 (611)
3 1nr0_A Actin interacting prote 100.0 5.9E-41 2E-45 385.8 49.0 344 336-704 22-522 (611)
4 3ow8_A WD repeat-containing pr 100.0 1.7E-40 5.7E-45 350.4 42.5 282 379-703 30-320 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 2.5E-40 8.6E-45 352.0 43.9 280 379-701 53-340 (340)
6 2ymu_A WD-40 repeat protein; u 100.0 6.2E-40 2.1E-44 374.3 47.8 305 338-701 268-577 (577)
7 4g56_B MGC81050 protein; prote 100.0 2.3E-40 7.9E-45 354.8 35.7 314 341-705 14-344 (357)
8 4gqb_B Methylosome protein 50; 100.0 1.3E-39 4.5E-44 346.6 37.5 288 380-705 29-332 (344)
9 2pbi_B Guanine nucleotide-bind 100.0 5.5E-39 1.9E-43 343.7 41.5 280 379-701 62-354 (354)
10 2ynn_A Coatomer subunit beta'; 100.0 5.2E-39 1.8E-43 336.2 40.1 282 379-704 11-302 (304)
11 3frx_A Guanine nucleotide-bind 100.0 7.7E-39 2.6E-43 337.4 41.4 292 379-705 15-318 (319)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-39 1.9E-43 342.4 40.0 297 379-708 13-339 (345)
13 2ymu_A WD-40 repeat protein; u 100.0 5.1E-38 1.7E-42 358.5 50.0 329 338-704 63-457 (577)
14 4ery_A WD repeat-containing pr 100.0 8.6E-38 2.9E-42 327.8 44.3 283 379-703 21-311 (312)
15 1got_B GT-beta; complex (GTP-b 100.0 3.6E-38 1.2E-42 335.3 41.3 276 338-648 61-340 (340)
16 3iz6_a 40S ribosomal protein R 100.0 6.4E-39 2.2E-43 346.7 33.3 289 379-705 64-376 (380)
17 1vyh_C Platelet-activating fac 100.0 2E-38 6.7E-43 346.5 37.3 272 338-650 114-410 (410)
18 1r5m_A SIR4-interacting protei 100.0 6.3E-38 2.1E-42 342.1 40.9 321 337-703 50-424 (425)
19 3ow8_A WD repeat-containing pr 100.0 6.4E-38 2.2E-42 330.6 39.5 269 343-650 47-320 (321)
20 1gxr_A ESG1, transducin-like e 100.0 1.5E-37 5.2E-42 328.1 41.6 315 338-703 15-336 (337)
21 2pm9_A Protein WEB1, protein t 100.0 7.1E-39 2.4E-43 349.4 29.0 333 336-705 16-415 (416)
22 2hes_X YDR267CP; beta-propelle 100.0 4.2E-37 1.4E-41 325.7 40.4 288 379-704 12-328 (330)
23 2xzm_R RACK1; ribosome, transl 100.0 4.2E-37 1.4E-41 327.5 40.1 292 379-705 19-341 (343)
24 4gqb_B Methylosome protein 50; 100.0 1E-37 3.5E-42 332.0 34.8 279 338-653 36-333 (344)
25 3frx_A Guanine nucleotide-bind 100.0 3.4E-37 1.2E-41 324.8 37.9 279 338-652 23-318 (319)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.7E-37 1.6E-41 327.4 39.2 292 338-657 22-341 (345)
27 1erj_A Transcriptional repress 100.0 9.6E-37 3.3E-41 331.2 40.2 303 380-705 63-390 (393)
28 2pbi_B Guanine nucleotide-bind 100.0 7.5E-37 2.6E-41 327.1 38.7 278 338-648 70-354 (354)
29 4g56_B MGC81050 protein; prote 100.0 2.1E-37 7E-42 331.8 32.7 281 338-653 48-345 (357)
30 3iz6_a 40S ribosomal protein R 100.0 1.2E-37 4.1E-42 336.7 31.0 290 338-653 72-377 (380)
31 2oaj_A Protein SNI1; WD40 repe 100.0 9.6E-37 3.3E-41 364.2 41.8 349 337-706 63-666 (902)
32 4aow_A Guanine nucleotide-bind 100.0 1.4E-35 4.9E-40 313.8 44.3 293 379-706 36-339 (340)
33 3vl1_A 26S proteasome regulato 100.0 5.8E-37 2E-41 335.1 34.5 322 337-704 61-419 (420)
34 1pgu_A Actin interacting prote 100.0 2.1E-35 7.2E-40 338.9 46.0 343 336-704 22-614 (615)
35 2xzm_R RACK1; ribosome, transl 100.0 9E-36 3.1E-40 317.2 39.1 277 341-653 35-342 (343)
36 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-36 9.5E-41 375.4 39.0 342 338-710 705-1164(1249)
37 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-35 4E-40 354.9 41.2 346 338-708 23-609 (902)
38 4aow_A Guanine nucleotide-bind 100.0 7.1E-35 2.4E-39 308.4 41.1 281 338-653 44-339 (340)
39 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-34 3.8E-39 320.1 44.4 312 339-705 124-443 (445)
40 2hes_X YDR267CP; beta-propelle 100.0 3E-35 1E-39 311.4 37.4 288 338-651 20-328 (330)
41 2ynn_A Coatomer subunit beta'; 100.0 3.8E-35 1.3E-39 306.8 37.5 245 444-708 11-263 (304)
42 3dm0_A Maltose-binding peripla 100.0 5.2E-35 1.8E-39 341.6 42.4 293 379-703 380-692 (694)
43 1gxr_A ESG1, transducin-like e 100.0 2.2E-34 7.4E-39 303.9 43.0 275 337-649 56-335 (337)
44 3zwl_B Eukaryotic translation 100.0 2.5E-34 8.4E-39 307.3 42.2 282 379-706 30-348 (369)
45 3gre_A Serine/threonine-protei 100.0 1.9E-35 6.6E-40 325.2 32.4 321 338-701 33-437 (437)
46 1erj_A Transcriptional repress 100.0 1.2E-34 4.1E-39 314.6 37.3 281 337-651 69-389 (393)
47 3ei3_B DNA damage-binding prot 100.0 1.6E-34 5.6E-39 312.0 37.8 284 379-704 71-382 (383)
48 1sq9_A Antiviral protein SKI8; 100.0 9.7E-35 3.3E-39 314.8 36.0 295 379-706 14-397 (397)
49 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-34 5.1E-39 359.9 42.8 321 338-708 621-1038(1249)
50 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-36 1.2E-40 336.9 24.8 326 340-704 169-517 (524)
51 4ery_A WD repeat-containing pr 100.0 4.1E-34 1.4E-38 299.7 39.2 275 338-650 29-311 (312)
52 4e54_B DNA damage-binding prot 100.0 3.2E-35 1.1E-39 323.6 31.0 289 380-707 118-433 (435)
53 3k26_A Polycomb protein EED; W 100.0 3E-34 1E-38 306.5 37.0 290 379-703 16-365 (366)
54 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-34 1.1E-38 307.5 36.0 297 380-707 7-364 (372)
55 3v7d_B Cell division control p 100.0 1.6E-33 5.4E-38 312.5 41.7 305 339-702 127-461 (464)
56 4h5i_A Guanine nucleotide-exch 100.0 7.4E-34 2.5E-38 305.1 37.1 293 381-705 14-344 (365)
57 1r5m_A SIR4-interacting protei 100.0 6E-34 2.1E-38 310.5 36.5 291 379-706 43-363 (425)
58 3dm0_A Maltose-binding peripla 100.0 8.1E-34 2.8E-38 331.5 39.9 278 338-650 388-692 (694)
59 3i2n_A WD repeat-containing pr 100.0 1.7E-34 5.9E-39 307.5 31.0 285 379-706 16-355 (357)
60 3vl1_A 26S proteasome regulato 100.0 5.3E-34 1.8E-38 311.6 34.5 285 382-705 57-366 (420)
61 4aez_A CDC20, WD repeat-contai 100.0 1.5E-33 5.1E-38 306.8 36.5 288 380-711 90-387 (401)
62 2pm9_A Protein WEB1, protein t 100.0 1.5E-34 5.1E-39 315.2 28.7 291 381-707 12-340 (416)
63 3dwl_C Actin-related protein 2 100.0 6.4E-35 2.2E-39 314.2 25.1 291 380-702 10-377 (377)
64 3odt_A Protein DOA1; ubiquitin 100.0 6.8E-33 2.3E-37 289.4 39.5 276 379-708 16-300 (313)
65 4aez_A CDC20, WD repeat-contai 100.0 3.3E-33 1.1E-37 304.1 37.7 280 340-658 99-387 (401)
66 4gga_A P55CDC, cell division c 100.0 8.9E-33 3.1E-37 302.6 40.7 282 383-707 107-398 (420)
67 4a11_B DNA excision repair pro 100.0 3.7E-33 1.3E-37 302.8 36.2 326 351-708 20-369 (408)
68 4a11_B DNA excision repair pro 100.0 5.1E-33 1.7E-37 301.6 37.2 324 338-703 49-404 (408)
69 4ggc_A P55CDC, cell division c 100.0 3.2E-32 1.1E-36 285.1 40.5 280 384-706 28-317 (318)
70 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-32 3.6E-37 327.8 41.0 322 338-705 19-387 (814)
71 1k8k_C P40, ARP2/3 complex 41 100.0 2.9E-33 9.8E-38 300.0 32.4 280 338-653 14-363 (372)
72 4e54_B DNA damage-binding prot 100.0 4.3E-34 1.5E-38 314.7 26.2 286 338-655 125-434 (435)
73 3zwl_B Eukaryotic translation 100.0 1.5E-32 5E-37 293.5 37.0 276 338-656 38-351 (369)
74 3ei3_B DNA damage-binding prot 100.0 1.9E-32 6.5E-37 295.7 37.3 284 338-651 79-382 (383)
75 2pm7_B Protein transport prote 100.0 1.5E-32 5E-37 286.2 34.3 246 379-650 7-284 (297)
76 3dw8_B Serine/threonine-protei 100.0 8.8E-33 3E-37 304.4 34.2 303 380-703 27-445 (447)
77 3odt_A Protein DOA1; ubiquitin 100.0 3.6E-32 1.2E-36 283.8 36.2 276 338-658 24-303 (313)
78 3gre_A Serine/threonine-protei 100.0 8.5E-33 2.9E-37 304.1 32.4 289 338-648 69-437 (437)
79 3v7d_B Cell division control p 100.0 1.6E-31 5.3E-36 296.4 42.7 279 379-710 119-427 (464)
80 3k26_A Polycomb protein EED; W 100.0 6.6E-33 2.3E-37 296.1 30.0 283 338-651 24-366 (366)
81 1yfq_A Cell cycle arrest prote 100.0 1.8E-32 6.3E-37 290.3 33.0 279 379-701 9-321 (342)
82 4gga_A P55CDC, cell division c 100.0 7.4E-32 2.5E-36 295.3 38.6 277 339-658 112-402 (420)
83 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-32 2E-36 321.5 39.8 285 379-707 11-305 (814)
84 3dwl_C Actin-related protein 2 100.0 2.9E-33 1E-37 301.2 25.7 283 336-649 15-377 (377)
85 1p22_A F-BOX/WD-repeat protein 100.0 5.3E-32 1.8E-36 297.9 35.2 279 380-714 132-424 (435)
86 4h5i_A Guanine nucleotide-exch 100.0 1.4E-32 4.9E-37 295.0 28.7 289 338-652 20-344 (365)
87 3i2n_A WD repeat-containing pr 100.0 1.9E-32 6.5E-37 291.7 29.4 282 338-654 24-356 (357)
88 2pm7_B Protein transport prote 100.0 9.7E-32 3.3E-36 280.0 33.6 249 444-711 7-291 (297)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.2E-31 2.8E-35 289.2 42.4 280 379-710 116-397 (445)
90 1sq9_A Antiviral protein SKI8; 100.0 4.4E-32 1.5E-36 293.9 31.0 283 338-653 22-397 (397)
91 4ggc_A P55CDC, cell division c 100.0 8.6E-31 2.9E-35 274.2 38.6 273 338-653 31-317 (318)
92 3bg1_A Protein SEC13 homolog; 100.0 3.9E-32 1.3E-36 285.7 26.9 256 444-719 11-307 (316)
93 2j04_A TAU60, YPL007P, hypothe 100.0 9.1E-32 3.1E-36 293.9 27.2 294 334-693 17-350 (588)
94 3bg1_A Protein SEC13 homolog; 100.0 5E-32 1.7E-36 284.8 24.4 243 379-650 11-292 (316)
95 3mmy_A MRNA export factor; mRN 100.0 6.5E-31 2.2E-35 280.6 33.3 281 379-704 37-346 (368)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-31 1.6E-35 287.1 31.0 288 339-655 41-346 (402)
97 3jrp_A Fusion protein of prote 100.0 1.3E-30 4.6E-35 279.5 34.1 249 379-653 9-289 (379)
98 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-30 1.2E-34 271.9 35.4 250 444-707 9-340 (351)
99 3dw8_B Serine/threonine-protei 100.0 1.7E-30 5.7E-35 286.2 32.7 301 338-650 34-445 (447)
100 1p22_A F-BOX/WD-repeat protein 100.0 2E-30 6.8E-35 285.3 32.1 267 340-657 139-420 (435)
101 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-30 1.3E-34 271.8 32.9 252 379-658 9-344 (351)
102 1pgu_A Actin interacting prote 100.0 1.3E-29 4.4E-34 290.7 39.7 287 379-709 16-333 (615)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-30 4.9E-35 283.2 29.9 287 383-707 36-345 (402)
104 3bws_A Protein LP49; two-domai 100.0 3.1E-29 1.1E-33 275.1 38.9 307 349-704 94-432 (433)
105 3jrp_A Fusion protein of prote 100.0 5.3E-30 1.8E-34 274.9 31.7 244 444-705 9-288 (379)
106 1yfq_A Cell cycle arrest prote 100.0 4.8E-30 1.7E-34 271.6 29.9 275 338-648 17-321 (342)
107 2j04_B YDR362CP, TAU91; beta p 100.0 3E-31 1E-35 296.9 21.3 277 338-651 213-517 (524)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-29 5.6E-34 279.3 33.7 307 381-710 4-397 (450)
109 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-30 1.1E-34 281.7 25.3 265 380-703 14-296 (588)
110 3vu4_A KMHSV2; beta-propeller 100.0 4.6E-29 1.6E-33 266.7 31.9 286 379-706 17-338 (355)
111 1l0q_A Surface layer protein; 100.0 1.8E-27 6.2E-32 257.2 42.3 314 344-707 2-345 (391)
112 3lrv_A PRE-mRNA-splicing facto 100.0 4.3E-29 1.5E-33 265.5 26.8 274 339-650 43-332 (343)
113 2xyi_A Probable histone-bindin 100.0 2.4E-28 8.2E-33 268.3 30.7 243 444-705 126-411 (430)
114 3lrv_A PRE-mRNA-splicing facto 100.0 2E-28 6.7E-33 260.4 27.8 272 387-705 42-334 (343)
115 3mmy_A MRNA export factor; mRN 100.0 3.2E-28 1.1E-32 259.7 28.8 277 338-650 45-345 (368)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.8E-28 2E-32 266.9 31.0 244 379-650 100-390 (450)
117 3jro_A Fusion protein of prote 100.0 1.6E-28 5.5E-33 288.8 27.8 247 379-651 7-285 (753)
118 3jro_A Fusion protein of prote 100.0 2.1E-28 7.2E-33 287.8 27.6 248 444-706 7-287 (753)
119 4gq1_A NUP37; propeller, trans 100.0 4.2E-28 1.4E-32 263.0 27.2 299 382-702 16-387 (393)
120 3vu4_A KMHSV2; beta-propeller 100.0 1E-27 3.6E-32 256.1 28.7 270 337-652 24-337 (355)
121 1l0q_A Surface layer protein; 100.0 3.8E-26 1.3E-30 246.8 39.1 264 395-709 4-280 (391)
122 4gq1_A NUP37; propeller, trans 100.0 1.2E-27 4.2E-32 259.4 26.6 286 340-650 26-388 (393)
123 2xyi_A Probable histone-bindin 100.0 2E-27 6.8E-32 261.0 28.1 250 380-652 127-411 (430)
124 2w18_A PALB2, fancn, partner a 100.0 1.7E-26 5.7E-31 237.6 32.1 271 347-702 57-355 (356)
125 3bws_A Protein LP49; two-domai 100.0 4.4E-26 1.5E-30 249.8 34.5 273 337-651 127-432 (433)
126 1nir_A Nitrite reductase; hemo 99.9 3.5E-25 1.2E-29 249.5 38.5 328 339-711 144-521 (543)
127 2w18_A PALB2, fancn, partner a 99.9 1.7E-25 5.8E-30 230.2 25.5 217 380-649 110-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.4E-24 1.5E-28 233.0 31.3 288 339-682 69-407 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 1E-23 3.5E-28 247.8 31.6 319 337-706 41-461 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.4E-24 2.5E-28 231.2 26.6 277 381-706 62-389 (415)
131 1nir_A Nitrite reductase; hemo 99.9 7.9E-23 2.7E-27 230.3 32.6 299 337-659 183-522 (543)
132 1k32_A Tricorn protease; prote 99.9 3.3E-23 1.1E-27 252.6 31.1 330 337-706 57-463 (1045)
133 1xfd_A DIP, dipeptidyl aminope 99.9 7.3E-23 2.5E-27 239.8 31.3 324 336-706 20-445 (723)
134 1k32_A Tricorn protease; prote 99.9 3.4E-22 1.2E-26 243.6 36.7 231 448-706 246-504 (1045)
135 1ri6_A Putative isomerase YBHE 99.9 9.3E-22 3.2E-26 207.6 35.0 277 346-654 7-313 (343)
136 3vgz_A Uncharacterized protein 99.9 3.7E-21 1.3E-25 204.1 36.4 271 380-695 39-335 (353)
137 3u4y_A Uncharacterized protein 99.9 3E-21 1E-25 203.2 34.9 287 387-710 3-310 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 6.1E-22 2.1E-26 231.4 31.9 316 344-706 35-437 (706)
139 2ecf_A Dipeptidyl peptidase IV 99.9 9.6E-22 3.3E-26 231.0 28.7 301 381-704 36-413 (741)
140 1pby_B Quinohemoprotein amine 99.9 2.9E-21 9.9E-26 203.2 27.9 269 394-712 2-318 (337)
141 3u4y_A Uncharacterized protein 99.9 2.3E-20 7.9E-25 196.4 34.1 276 340-654 5-307 (331)
142 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4E-25 198.6 30.8 276 345-660 2-319 (337)
143 1ri6_A Putative isomerase YBHE 99.9 1.8E-20 6.1E-25 197.7 31.4 269 394-703 5-307 (343)
144 3vgz_A Uncharacterized protein 99.9 5.9E-20 2E-24 194.8 32.0 269 338-642 46-335 (353)
145 3scy_A Hypothetical bacterial 99.9 1.4E-19 4.9E-24 193.2 35.1 289 338-657 7-345 (361)
146 2ojh_A Uncharacterized protein 99.9 1.9E-20 6.4E-25 192.5 27.2 253 349-642 17-293 (297)
147 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-21 8E-26 227.0 23.0 281 382-704 17-393 (723)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 3.9E-19 1.3E-23 194.6 37.1 312 380-704 35-405 (434)
149 2ojh_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 193.8 23.0 252 399-695 18-293 (297)
150 3hfq_A Uncharacterized protein 99.9 4.5E-19 1.5E-23 188.1 34.2 245 445-707 38-322 (347)
151 1z68_A Fibroblast activation p 99.9 2.1E-20 7.1E-25 218.9 26.1 320 336-707 19-446 (719)
152 3hfq_A Uncharacterized protein 99.9 4.5E-19 1.6E-23 188.0 32.9 277 351-656 13-324 (347)
153 1jmx_B Amine dehydrogenase; ox 99.8 4.2E-19 1.4E-23 187.8 30.0 286 386-712 4-333 (349)
154 3o4h_A Acylamino-acid-releasin 99.8 1.2E-19 4E-24 207.1 24.9 267 380-704 20-315 (582)
155 2z3z_A Dipeptidyl aminopeptida 99.8 2.1E-19 7.2E-24 209.9 27.5 293 383-706 27-393 (706)
156 3o4h_A Acylamino-acid-releasin 99.8 2.6E-19 9E-24 204.2 24.3 261 338-651 27-315 (582)
157 3pe7_A Oligogalacturonate lyas 99.8 5.6E-18 1.9E-22 182.3 31.1 295 380-709 29-387 (388)
158 1jmx_B Amine dehydrogenase; ox 99.8 5.6E-18 1.9E-22 179.1 30.4 279 338-660 5-334 (349)
159 3scy_A Hypothetical bacterial 99.8 1E-16 3.6E-21 170.8 36.4 246 445-707 48-342 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.8 3.8E-17 1.3E-21 191.7 34.9 321 337-706 21-451 (740)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 4.9E-18 1.7E-22 185.9 21.6 251 445-710 35-339 (434)
162 1z68_A Fibroblast activation p 99.8 2.3E-18 8E-23 201.5 20.1 287 336-659 63-451 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.1E-17 3.1E-21 171.8 30.4 282 347-653 5-343 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-16 5.6E-21 169.9 30.8 248 446-705 39-342 (365)
165 3pe7_A Oligogalacturonate lyas 99.8 3.6E-17 1.2E-21 176.0 23.1 273 338-649 41-380 (388)
166 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-16 6.2E-21 186.0 27.1 252 380-656 15-358 (740)
167 2oiz_A Aromatic amine dehydrog 99.7 8.1E-16 2.8E-20 164.1 28.8 298 342-686 13-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.7 1.1E-16 3.8E-21 172.4 20.6 281 382-703 36-381 (396)
169 1q7f_A NHL, brain tumor CG1071 99.7 2.9E-14 9.8E-19 146.5 34.4 239 444-705 27-281 (286)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.8E-13 6.1E-18 153.7 41.7 325 341-711 164-545 (567)
171 3fvz_A Peptidyl-glycine alpha- 99.7 7.5E-15 2.6E-19 154.5 28.0 244 446-704 23-322 (329)
172 1q7f_A NHL, brain tumor CG1071 99.7 3.1E-14 1.1E-18 146.2 31.7 243 379-652 27-281 (286)
173 3c5m_A Oligogalacturonate lyas 99.7 1.8E-15 6.1E-20 162.9 21.8 284 337-654 40-387 (396)
174 3azo_A Aminopeptidase; POP fam 99.7 7E-15 2.4E-19 170.1 27.3 282 338-657 29-375 (662)
175 3azo_A Aminopeptidase; POP fam 99.7 7.1E-15 2.4E-19 170.1 26.5 283 380-707 22-372 (662)
176 3fvz_A Peptidyl-glycine alpha- 99.7 4.8E-14 1.7E-18 148.3 28.7 261 381-651 23-322 (329)
177 3dsm_A Uncharacterized protein 99.6 6.9E-14 2.4E-18 147.0 29.2 240 447-711 44-308 (328)
178 2dg1_A DRP35, lactonase; beta 99.6 4.9E-14 1.7E-18 148.1 28.0 272 381-695 5-301 (333)
179 3no2_A Uncharacterized protein 99.6 8.8E-14 3E-18 142.2 28.6 252 456-723 5-271 (276)
180 2gop_A Trilobed protease; beta 99.6 1.5E-13 5.2E-18 145.1 28.8 254 381-703 14-330 (347)
181 2z2n_A Virginiamycin B lyase; 99.6 7.3E-12 2.5E-16 128.7 40.7 277 380-705 13-296 (299)
182 2bkl_A Prolyl endopeptidase; m 99.6 2.5E-14 8.6E-19 166.5 24.4 281 340-707 75-400 (695)
183 2xdw_A Prolyl endopeptidase; a 99.6 4.2E-13 1.4E-17 156.5 32.1 242 444-706 122-416 (710)
184 2xdw_A Prolyl endopeptidase; a 99.6 9E-13 3.1E-17 153.7 34.6 279 341-653 80-416 (710)
185 2oiz_A Aromatic amine dehydrog 99.6 2.5E-13 8.4E-18 144.8 27.2 225 464-708 30-340 (361)
186 2gop_A Trilobed protease; beta 99.6 3E-13 1E-17 142.8 27.2 248 343-653 23-332 (347)
187 2dg1_A DRP35, lactonase; beta 99.6 1.6E-12 5.5E-17 136.5 30.9 266 338-642 11-301 (333)
188 3dsm_A Uncharacterized protein 99.5 3.1E-12 1.1E-16 134.3 30.0 269 350-659 13-309 (328)
189 3e5z_A Putative gluconolactona 99.5 2.6E-12 8.7E-17 132.6 28.9 231 445-706 26-288 (296)
190 3sjl_D Methylamine dehydrogena 99.5 5.7E-12 1.9E-16 133.0 30.9 288 338-660 38-372 (386)
191 3e5z_A Putative gluconolactona 99.5 3.4E-12 1.2E-16 131.7 28.6 234 380-653 26-288 (296)
192 2z2n_A Virginiamycin B lyase; 99.5 6.9E-11 2.4E-15 121.4 36.8 271 338-653 20-297 (299)
193 2mad_H Methylamine dehydrogena 99.5 3.1E-11 1E-15 128.8 33.5 282 340-658 28-357 (373)
194 1rwi_B Serine/threonine-protei 99.5 4.4E-12 1.5E-16 128.7 25.5 235 448-706 25-266 (270)
195 1yr2_A Prolyl oligopeptidase; 99.5 1.7E-12 5.9E-17 152.1 25.4 282 339-654 113-444 (741)
196 2qc5_A Streptogramin B lactona 99.5 2.4E-10 8.2E-15 117.3 38.7 275 380-703 18-299 (300)
197 1qks_A Cytochrome CD1 nitrite 99.5 6.3E-11 2.2E-15 133.0 35.9 270 391-705 165-478 (567)
198 1rwi_B Serine/threonine-protei 99.5 7.9E-12 2.7E-16 126.7 26.1 236 383-653 25-266 (270)
199 3no2_A Uncharacterized protein 99.5 1.9E-11 6.6E-16 124.7 27.5 232 392-660 4-261 (276)
200 2mad_H Methylamine dehydrogena 99.5 2E-10 6.7E-15 122.6 35.9 275 388-708 27-354 (373)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.4E-11 2.5E-15 122.3 31.1 234 446-704 17-299 (314)
202 3sjl_D Methylamine dehydrogena 99.4 3.5E-11 1.2E-15 127.0 28.2 280 387-711 38-370 (386)
203 1yr2_A Prolyl oligopeptidase; 99.4 1.4E-11 4.6E-16 144.4 26.5 242 445-707 161-444 (741)
204 2qc5_A Streptogramin B lactona 99.4 8.2E-10 2.8E-14 113.3 34.6 268 338-650 25-299 (300)
205 3c75_H MADH, methylamine dehyd 99.4 5.8E-11 2E-15 127.6 25.8 279 341-658 81-409 (426)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.3E-10 7.9E-15 118.6 28.1 244 381-651 17-299 (314)
207 2bkl_A Prolyl endopeptidase; m 99.4 6.9E-11 2.4E-15 137.4 25.9 226 455-703 78-348 (695)
208 3g4e_A Regucalcin; six bladed 99.3 8.4E-10 2.9E-14 113.9 29.1 227 381-641 12-262 (297)
209 1yiq_A Quinohemoprotein alcoho 99.3 9E-10 3.1E-14 127.1 31.2 292 393-714 70-515 (689)
210 1kb0_A Quinohemoprotein alcoho 99.3 1.1E-09 3.9E-14 126.1 31.6 294 393-715 77-518 (677)
211 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.6E-09 1.6E-13 112.1 34.1 302 343-702 52-376 (376)
212 1xip_A Nucleoporin NUP159; bet 99.3 5.6E-10 1.9E-14 118.3 25.4 172 447-639 38-232 (388)
213 3g4e_A Regucalcin; six bladed 99.3 2.7E-09 9.2E-14 110.0 29.5 222 447-692 13-260 (297)
214 1kb0_A Quinohemoprotein alcoho 99.3 1.1E-09 3.9E-14 126.0 29.5 323 344-703 77-566 (677)
215 3hrp_A Uncharacterized protein 99.3 2.6E-09 9E-14 115.4 30.2 244 447-702 131-408 (409)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.3 6E-09 2E-13 111.2 32.2 283 392-713 52-346 (376)
217 3c75_H MADH, methylamine dehyd 99.2 1.8E-09 6.1E-14 116.0 26.1 228 465-708 99-406 (426)
218 1yiq_A Quinohemoprotein alcoho 99.2 3E-09 1E-13 122.8 29.9 291 343-660 69-514 (689)
219 3hrp_A Uncharacterized protein 99.2 1.9E-09 6.4E-14 116.6 26.5 239 382-649 131-408 (409)
220 1xip_A Nucleoporin NUP159; bet 99.2 2.4E-10 8.1E-15 121.1 18.5 188 382-594 38-230 (388)
221 2ghs_A AGR_C_1268P; regucalcin 99.2 1.2E-08 4E-13 106.8 31.4 216 449-692 51-290 (326)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 1.4E-08 4.7E-13 106.2 30.9 223 383-641 50-292 (326)
223 3iuj_A Prolyl endopeptidase; h 99.2 9.8E-10 3.3E-14 127.5 24.2 240 380-655 127-409 (693)
224 3dr2_A Exported gluconolactona 99.2 3.4E-09 1.2E-13 109.7 24.6 229 380-648 43-303 (305)
225 2qe8_A Uncharacterized protein 99.2 1.5E-09 5.3E-14 114.4 21.2 270 382-701 17-318 (343)
226 3hxj_A Pyrrolo-quinoline quino 99.2 2.7E-09 9.1E-14 111.3 22.6 295 345-706 31-326 (330)
227 3iuj_A Prolyl endopeptidase; h 99.1 4.2E-09 1.4E-13 122.2 24.7 239 444-708 126-409 (693)
228 3dr2_A Exported gluconolactona 99.1 1.6E-08 5.3E-13 104.7 26.1 224 445-698 43-301 (305)
229 1mda_H Methylamine dehydrogena 99.1 2.4E-09 8.2E-14 113.1 18.4 258 355-660 47-355 (368)
230 1mda_H Methylamine dehydrogena 99.1 5.5E-09 1.9E-13 110.3 20.7 225 466-708 47-350 (368)
231 2hz6_A Endoplasmic reticulum t 99.1 6.5E-12 2.2E-16 134.1 -2.3 224 456-712 9-248 (369)
232 2qe8_A Uncharacterized protein 99.1 3.5E-09 1.2E-13 111.6 18.4 271 338-647 22-317 (343)
233 2ece_A 462AA long hypothetical 99.1 1.2E-07 4.1E-12 100.6 29.6 227 456-692 95-399 (462)
234 2hz6_A Endoplasmic reticulum t 99.0 8.8E-11 3E-15 125.3 5.3 185 498-712 11-200 (369)
235 2ece_A 462AA long hypothetical 99.0 1.6E-07 5.5E-12 99.7 29.0 237 389-639 89-399 (462)
236 1fwx_A Nitrous oxide reductase 99.0 1.6E-08 5.6E-13 111.0 21.5 239 450-706 90-433 (595)
237 1kv9_A Type II quinohemoprotei 99.0 1.7E-07 5.9E-12 107.7 30.6 291 393-714 66-498 (668)
238 3hxj_A Pyrrolo-quinoline quino 99.0 4E-09 1.4E-13 110.0 15.1 267 387-713 25-292 (330)
239 1npe_A Nidogen, entactin; glyc 98.9 1.7E-06 5.8E-11 87.3 32.3 212 448-682 37-260 (267)
240 2ad6_A Methanol dehydrogenase 98.9 8.2E-07 2.8E-11 100.0 32.0 292 393-714 62-504 (571)
241 4a2l_A BT_4663, two-component 98.9 6.4E-06 2.2E-10 97.0 41.2 325 342-706 224-573 (795)
242 4a2l_A BT_4663, two-component 98.9 1.4E-05 4.8E-10 94.0 43.3 324 339-706 269-616 (795)
243 1kv9_A Type II quinohemoprotei 98.9 4.3E-07 1.5E-11 104.4 28.4 290 344-660 66-497 (668)
244 2ad6_A Methanol dehydrogenase 98.9 8.5E-07 2.9E-11 99.8 29.5 246 393-660 115-503 (571)
245 2iwa_A Glutamine cyclotransfer 98.9 6.4E-07 2.2E-11 89.4 25.3 217 475-706 9-239 (266)
246 1npe_A Nidogen, entactin; glyc 98.8 6.6E-06 2.3E-10 82.8 31.1 229 456-708 1-242 (267)
247 1w6s_A Methanol dehydrogenase 98.8 2.2E-06 7.6E-11 96.5 29.1 251 387-660 111-512 (599)
248 3nol_A Glutamine cyclotransfer 98.8 4.8E-07 1.7E-11 89.2 20.7 200 476-692 32-244 (262)
249 1w6s_A Methanol dehydrogenase 98.8 6.6E-06 2.3E-10 92.6 31.8 292 393-714 62-513 (599)
250 1flg_A Protein (quinoprotein e 98.8 4.1E-06 1.4E-10 94.3 30.2 290 394-714 69-526 (582)
251 2iwa_A Glutamine cyclotransfer 98.7 6.4E-06 2.2E-10 82.2 27.1 200 382-608 21-238 (266)
252 1flg_A Protein (quinoprotein e 98.7 1.3E-05 4.6E-10 90.1 32.7 248 393-660 117-525 (582)
253 3v9f_A Two-component system se 98.7 3.7E-05 1.3E-09 90.2 37.9 294 380-706 311-613 (781)
254 3nok_A Glutaminyl cyclase; bet 98.7 1.3E-06 4.6E-11 86.0 20.8 198 476-692 44-254 (268)
255 3mbr_X Glutamine cyclotransfer 98.6 1.6E-05 5.5E-10 77.7 26.4 198 476-692 10-223 (243)
256 3nol_A Glutamine cyclotransfer 98.6 5.9E-06 2E-10 81.5 23.1 183 448-640 44-244 (262)
257 3v9f_A Two-component system se 98.6 9.8E-05 3.3E-09 86.6 38.1 318 342-704 322-656 (781)
258 3nok_A Glutaminyl cyclase; bet 98.6 5.1E-06 1.8E-10 81.9 21.8 184 447-639 55-253 (268)
259 1fwx_A Nitrous oxide reductase 98.6 3.3E-06 1.1E-10 92.8 22.6 221 459-704 18-361 (595)
260 2fp8_A Strictosidine synthase; 98.6 2.5E-05 8.6E-10 81.0 27.6 235 448-705 20-314 (322)
261 3mbr_X Glutamine cyclotransfer 98.5 2.6E-05 8.9E-10 76.2 24.8 187 446-640 20-223 (243)
262 2xbg_A YCF48-like protein; pho 98.5 0.00056 1.9E-08 71.0 35.0 276 381-702 35-320 (327)
263 2fp8_A Strictosidine synthase; 98.5 7E-05 2.4E-09 77.6 27.2 246 383-651 20-313 (322)
264 3v64_C Agrin; beta propeller, 98.4 0.00038 1.3E-08 72.9 31.9 234 449-706 36-277 (349)
265 1ijq_A LDL receptor, low-densi 98.4 0.00033 1.1E-08 72.3 30.6 227 458-706 3-240 (316)
266 3v65_B Low-density lipoprotein 98.4 0.0003 1E-08 74.9 29.5 232 451-706 81-320 (386)
267 3v64_C Agrin; beta propeller, 98.3 0.0011 3.6E-08 69.5 32.7 201 447-659 73-283 (349)
268 1ijq_A LDL receptor, low-densi 98.3 0.0016 5.4E-08 67.1 33.4 203 446-659 29-246 (316)
269 2p4o_A Hypothetical protein; p 98.3 0.00035 1.2E-08 71.7 28.3 223 382-642 32-279 (306)
270 2p4o_A Hypothetical protein; p 98.3 0.00041 1.4E-08 71.2 28.0 228 447-694 32-278 (306)
271 3v65_B Low-density lipoprotein 98.3 0.00089 3E-08 71.2 31.1 201 447-659 116-326 (386)
272 3p5b_L Low density lipoprotein 98.2 0.0017 5.8E-08 69.4 32.1 230 456-707 83-323 (400)
273 3p5b_L Low density lipoprotein 98.2 0.0039 1.3E-07 66.5 34.9 204 445-659 110-328 (400)
274 3qqz_A Putative uncharacterize 98.2 0.0014 4.7E-08 64.9 28.5 215 480-703 21-252 (255)
275 1k3i_A Galactose oxidase precu 98.2 7.5E-05 2.6E-09 85.7 21.0 270 339-640 192-530 (656)
276 1k3i_A Galactose oxidase precu 98.2 0.00012 4.1E-09 84.0 22.5 276 386-693 190-530 (656)
277 3qqz_A Putative uncharacterize 98.2 0.0015 5.1E-08 64.6 27.1 202 444-651 24-253 (255)
278 3sov_A LRP-6, low-density lipo 98.1 0.001 3.5E-08 68.6 26.3 226 458-707 6-241 (318)
279 2xe4_A Oligopeptidase B; hydro 98.1 0.00032 1.1E-08 81.6 25.0 237 383-654 175-461 (751)
280 2xbg_A YCF48-like protein; pho 98.1 0.0094 3.2E-07 61.6 33.0 270 339-649 42-320 (327)
281 2xe4_A Oligopeptidase B; hydro 98.0 0.0002 6.9E-09 83.4 20.9 194 487-701 175-395 (751)
282 4hw6_A Hypothetical protein, I 98.0 0.0013 4.4E-08 71.0 25.8 246 448-703 140-432 (433)
283 3tc9_A Hypothetical hydrolase; 98.0 0.003 1E-07 68.1 28.3 244 448-703 138-429 (430)
284 3amr_A 3-phytase; beta-propell 97.9 0.0038 1.3E-07 64.1 24.8 192 458-659 42-272 (355)
285 3m0c_C LDL receptor, low-densi 97.9 0.016 5.4E-07 67.2 33.1 202 446-658 423-639 (791)
286 3m0c_C LDL receptor, low-densi 97.9 0.01 3.4E-07 68.8 31.0 229 456-706 395-634 (791)
287 3sov_A LRP-6, low-density lipo 97.8 0.0081 2.8E-07 61.8 26.8 200 448-659 36-246 (318)
288 3amr_A 3-phytase; beta-propell 97.8 0.0069 2.4E-07 62.2 24.2 186 498-703 42-262 (355)
289 4a0p_A LRP6, LRP-6, low-densit 97.7 0.029 9.9E-07 63.4 31.7 225 457-706 7-239 (628)
290 4hw6_A Hypothetical protein, I 97.7 0.0071 2.4E-07 65.2 25.1 242 382-650 139-432 (433)
291 3tc9_A Hypothetical hydrolase; 97.7 0.0075 2.6E-07 64.9 25.2 241 383-650 138-429 (430)
292 1n7d_A LDL receptor, low-densi 97.6 0.00029 9.8E-09 81.1 13.6 202 447-659 406-622 (699)
293 3ei3_A DNA damage-binding prot 97.6 0.11 3.8E-06 62.7 36.3 328 344-704 571-999 (1158)
294 3kya_A Putative phosphatase; s 97.6 0.027 9.3E-07 61.1 28.0 253 448-708 140-479 (496)
295 2xzh_A Clathrin heavy chain 1; 97.6 0.076 2.6E-06 53.5 27.9 260 354-653 49-334 (365)
296 3s94_A LRP-6, low-density lipo 97.5 0.2 6.9E-06 56.4 36.6 328 338-705 45-424 (619)
297 3s94_A LRP-6, low-density lipo 97.5 0.025 8.4E-07 63.9 26.3 227 458-707 11-246 (619)
298 2p9w_A MAL S 1 allergenic prot 97.5 0.055 1.9E-06 55.0 26.0 201 448-653 14-267 (334)
299 1n7d_A LDL receptor, low-densi 97.5 0.0002 6.8E-09 82.4 9.0 228 458-707 379-617 (699)
300 4a0p_A LRP6, LRP-6, low-densit 97.4 0.15 5E-06 57.6 32.1 198 447-658 37-244 (628)
301 2p9w_A MAL S 1 allergenic prot 97.4 0.0062 2.1E-07 62.0 17.8 161 488-651 15-215 (334)
302 2xzh_A Clathrin heavy chain 1; 97.4 0.15 5.2E-06 51.4 35.1 225 456-705 78-333 (365)
303 1bpo_A Protein (clathrin); cla 97.4 0.2 6.8E-06 52.5 31.0 261 354-653 48-333 (494)
304 1bpo_A Protein (clathrin); cla 97.3 0.21 7.2E-06 52.4 34.4 227 456-705 77-332 (494)
305 3kya_A Putative phosphatase; s 97.3 0.074 2.5E-06 57.7 26.4 249 383-655 140-479 (496)
306 3ei3_A DNA damage-binding prot 97.3 0.56 1.9E-05 56.7 41.3 307 345-706 524-915 (1158)
307 3ii7_A Kelch-like protein 7; p 97.2 0.15 5.2E-06 51.5 26.1 184 456-654 56-275 (306)
308 2xn4_A Kelch-like protein 2; s 97.1 0.13 4.4E-06 51.9 24.2 231 456-713 16-283 (302)
309 2vpj_A Kelch-like protein 12; 97.0 0.093 3.2E-06 53.0 22.8 223 465-713 31-285 (301)
310 3a9g_A Putative uncharacterize 97.0 0.39 1.3E-05 49.8 27.8 228 447-692 29-330 (354)
311 2vpj_A Kelch-like protein 12; 97.0 0.098 3.4E-06 52.8 22.8 183 456-653 63-280 (301)
312 3ii7_A Kelch-like protein 7; p 97.0 0.11 3.6E-06 52.7 22.8 228 458-713 14-279 (306)
313 2ism_A Putative oxidoreductase 96.9 0.3 1E-05 50.7 26.1 226 448-692 32-333 (352)
314 3ott_A Two-component system se 96.9 0.93 3.2E-05 52.3 35.6 284 381-704 323-626 (758)
315 3pbp_A Nucleoporin NUP82; beta 96.9 0.052 1.8E-06 56.9 19.4 148 494-647 29-208 (452)
316 2be1_A Serine/threonine-protei 96.8 0.0022 7.6E-08 66.1 7.9 200 498-709 12-236 (339)
317 3sre_A PON1, serum paraoxonase 96.8 0.51 1.7E-05 48.8 25.6 197 487-703 51-297 (355)
318 3ott_A Two-component system se 96.8 1.2 4.2E-05 51.3 36.9 237 381-654 21-263 (758)
319 4asc_A Kelch repeat and BTB do 96.8 0.45 1.5E-05 48.2 25.3 226 463-714 11-285 (315)
320 2g8s_A Glucose/sorbosone dehyd 96.7 0.53 1.8E-05 48.8 25.5 236 448-702 19-350 (353)
321 2nxp_A Transcription initiatio 96.6 0.0024 8.1E-08 57.8 5.3 96 80-187 52-150 (156)
322 3das_A Putative oxidoreductase 96.4 0.14 4.9E-06 52.7 18.8 115 521-639 26-158 (347)
323 1zgk_A Kelch-like ECH-associat 96.4 0.36 1.2E-05 48.8 21.9 231 456-713 25-294 (308)
324 2xn4_A Kelch-like protein 2; s 96.4 0.51 1.7E-05 47.4 23.0 183 456-653 62-278 (302)
325 2be1_A Serine/threonine-protei 96.4 0.15 5.3E-06 52.3 18.4 196 395-612 12-236 (339)
326 1uuj_A Platelet-activating fac 96.4 0.0011 3.7E-08 52.3 1.6 64 5-68 2-67 (88)
327 1xi4_A Clathrin heavy chain; a 96.3 0.23 7.8E-06 59.8 21.5 227 456-705 77-332 (1630)
328 3pbp_A Nucleoporin NUP82; beta 96.3 0.28 9.4E-06 51.5 19.8 164 534-711 28-218 (452)
329 3sre_A PON1, serum paraoxonase 96.3 0.5 1.7E-05 48.9 21.9 172 464-650 82-297 (355)
330 2j49_A Transcription initiatio 96.3 0.00059 2E-08 60.9 -0.5 99 79-187 34-135 (148)
331 1zgk_A Kelch-like ECH-associat 96.0 0.79 2.7E-05 46.2 21.6 175 465-654 90-290 (308)
332 2ism_A Putative oxidoreductase 95.9 0.33 1.1E-05 50.4 18.7 106 526-638 30-152 (352)
333 2uvk_A YJHT; unknown function, 95.9 0.96 3.3E-05 46.6 22.3 59 599-659 286-350 (357)
334 1xi4_A Clathrin heavy chain; a 95.9 0.34 1.2E-05 58.3 20.2 239 386-654 70-334 (1630)
335 2j4b_A TAF5, transcription ini 95.9 0.0022 7.6E-08 56.5 1.3 95 80-187 33-130 (138)
336 3a9g_A Putative uncharacterize 95.9 0.41 1.4E-05 49.7 19.0 104 526-639 28-153 (354)
337 4asc_A Kelch repeat and BTB do 95.8 1.2 4.2E-05 44.9 22.2 175 467-655 69-281 (315)
338 2uvk_A YJHT; unknown function, 95.7 0.99 3.4E-05 46.5 21.5 89 456-547 20-128 (357)
339 1cru_A Protein (soluble quinop 95.7 1.6 5.4E-05 46.9 23.3 111 526-640 26-163 (454)
340 2woz_A Kelch repeat and BTB do 95.6 2 6.8E-05 43.4 23.0 222 465-712 24-293 (318)
341 2xtc_A F-box-like/WD repeat-co 95.5 0.0091 3.1E-07 47.4 3.3 32 13-44 5-36 (90)
342 2g8s_A Glucose/sorbosone dehyd 95.4 0.48 1.6E-05 49.1 17.4 107 527-639 18-148 (353)
343 1tl2_A L10, protein (tachylect 95.2 0.15 5.1E-06 48.4 11.3 144 487-644 42-203 (236)
344 1cru_A Protein (soluble quinop 95.1 4.3 0.00015 43.4 28.6 99 447-545 27-162 (454)
345 3s25_A Hypothetical 7-bladed b 95.0 3.3 0.00011 41.6 25.9 136 455-614 114-261 (302)
346 2woz_A Kelch repeat and BTB do 95.0 2.4 8.2E-05 42.8 21.0 175 467-656 80-292 (318)
347 1tl2_A L10, protein (tachylect 94.9 0.41 1.4E-05 45.5 13.2 139 498-648 6-160 (236)
348 3sbq_A Nitrous-oxide reductase 94.5 2.4 8.3E-05 45.9 19.6 249 396-652 73-409 (638)
349 3s25_A Hypothetical 7-bladed b 93.5 7 0.00024 39.2 27.8 158 466-653 89-257 (302)
350 2zwa_A Leucine carboxyl methyl 93.4 3.7 0.00013 46.8 20.3 195 456-655 398-639 (695)
351 3das_A Putative oxidoreductase 93.3 8.1 0.00028 39.6 28.6 232 446-692 31-326 (347)
352 3qhy_B Beta-lactamase inhibito 92.9 3.4 0.00012 41.0 16.9 223 447-705 24-247 (282)
353 2zwa_A Leucine carboxyl methyl 92.1 12 0.00041 42.5 22.2 199 495-711 396-640 (695)
354 3qhy_B Beta-lactamase inhibito 91.5 11 0.00038 37.2 18.6 222 383-652 25-247 (282)
355 3q6k_A 43.2 kDa salivary prote 88.7 4.4 0.00015 42.1 13.0 152 549-704 124-306 (381)
356 2wg3_C Hedgehog-interacting pr 84.2 16 0.00056 39.0 15.1 112 527-641 14-159 (463)
357 3sbq_A Nitrous-oxide reductase 83.8 4.5 0.00015 43.8 10.1 139 507-654 299-481 (638)
358 3b7f_A Glycosyl hydrolase, BNR 82.4 48 0.0016 34.1 20.4 203 498-712 24-268 (394)
359 3no0_A DNA gyrase subunit A; D 80.0 47 0.0016 32.5 17.7 186 498-704 37-246 (276)
360 4hvt_A Ritya.17583.B, post-pro 78.8 92 0.0032 35.1 27.0 179 465-654 216-432 (711)
361 3q6k_A 43.2 kDa salivary prote 76.2 75 0.0026 32.7 24.0 171 465-638 123-341 (381)
362 4gco_A Protein STI-1; structur 72.7 18 0.00061 30.3 9.1 111 8-127 8-125 (126)
363 2wg3_C Hedgehog-interacting pr 71.8 40 0.0014 35.9 13.4 108 579-695 15-160 (463)
364 3b7f_A Glycosyl hydrolase, BNR 70.7 99 0.0034 31.6 25.3 245 456-712 22-328 (394)
365 4gq2_M Nucleoporin NUP120; bet 69.7 1.4E+02 0.0047 35.1 18.6 36 487-522 237-273 (950)
366 4gq2_M Nucleoporin NUP120; bet 69.3 22 0.00076 41.9 11.7 42 620-661 235-276 (950)
367 3uc1_A DNA gyrase subunit A; D 60.7 1.4E+02 0.0048 29.9 23.8 207 380-606 40-278 (327)
368 1zi0_A DNA gyrase subunit A; b 53.0 1.8E+02 0.0061 28.7 25.4 200 342-557 1-226 (307)
369 3zwu_A Alkaline phosphatase PH 53.0 32 0.0011 37.8 8.4 59 579-639 477-549 (592)
370 2lni_A Stress-induced-phosphop 51.3 67 0.0023 25.9 8.8 109 12-127 15-128 (133)
371 1elw_A TPR1-domain of HOP; HOP 49.4 90 0.0031 24.2 9.4 106 14-126 5-115 (118)
372 3uc1_A DNA gyrase subunit A; D 49.2 2.1E+02 0.0073 28.5 26.4 161 485-651 94-279 (327)
373 3qou_A Protein YBBN; thioredox 48.0 82 0.0028 30.6 10.0 104 19-129 123-231 (287)
374 3f7f_A Nucleoporin NUP120; nuc 46.4 60 0.002 36.4 9.2 31 630-660 229-259 (729)
375 4a9v_A PHOX; hydrolase, beta-p 45.9 60 0.0021 35.4 8.9 62 578-640 476-550 (592)
376 2vgx_A Chaperone SYCD; alterna 44.7 88 0.003 26.7 8.6 90 13-108 21-115 (148)
377 4hvt_A Ritya.17583.B, post-pro 44.6 3.8E+02 0.013 30.1 23.8 218 465-703 156-429 (711)
378 4ga2_A E3 SUMO-protein ligase 43.2 92 0.0031 26.6 8.5 69 52-129 41-111 (150)
379 3mkr_A Coatomer subunit epsilo 43.2 97 0.0033 30.2 9.7 85 14-109 65-157 (291)
380 2d68_A FOP, FGFR1OP; alpha hel 42.6 19 0.00066 27.9 3.2 29 15-43 20-48 (82)
381 2xcb_A PCRH, regulatory protei 41.9 1.1E+02 0.0037 25.6 8.8 89 14-108 19-112 (142)
382 3upv_A Heat shock protein STI1 41.0 1.1E+02 0.0038 24.6 8.4 87 16-108 7-98 (126)
383 1na0_A Designed protein CTPR3; 38.7 1.4E+02 0.0047 23.3 9.4 103 17-126 13-120 (125)
384 2pl2_A Hypothetical conserved 38.3 1.4E+02 0.0046 27.3 9.4 108 16-129 8-130 (217)
385 3u4t_A TPR repeat-containing p 38.0 1.4E+02 0.0049 27.8 9.9 109 16-128 6-119 (272)
386 3mkr_A Coatomer subunit epsilo 36.3 1.2E+02 0.0043 29.4 9.2 101 21-129 109-212 (291)
387 3ma5_A Tetratricopeptide repea 35.7 45 0.0016 26.2 4.8 71 52-128 17-88 (100)
388 3no0_A DNA gyrase subunit A; D 35.2 3.2E+02 0.011 26.4 19.4 184 456-650 36-245 (276)
389 2dba_A Smooth muscle cell asso 34.9 69 0.0023 26.5 6.2 14 94-107 77-90 (148)
390 3elq_A Arylsulfate sulfotransf 34.1 4.9E+02 0.017 28.2 19.2 132 579-715 208-395 (571)
391 3ct5_A Morphogenesis protein 1 33.1 20 0.00067 32.0 2.2 42 4-45 5-51 (159)
392 3zwu_A Alkaline phosphatase PH 32.9 1.1E+02 0.0038 33.5 8.7 60 622-691 477-548 (592)
393 2xev_A YBGF; tetratricopeptide 31.9 89 0.0031 25.1 6.3 73 51-128 11-87 (129)
394 2zux_A YESW protein; beta-prop 31.8 5.2E+02 0.018 27.9 20.2 56 467-522 231-308 (591)
395 2dba_A Smooth muscle cell asso 30.4 2.2E+02 0.0075 23.1 10.3 109 12-127 27-143 (148)
396 4fhn_B Nucleoporin NUP120; pro 30.3 2.2E+02 0.0074 34.2 11.5 33 677-710 242-274 (1139)
397 3sz7_A HSC70 cochaperone (SGT) 29.7 1.3E+02 0.0044 25.7 7.3 89 16-110 14-107 (164)
398 4gcn_A Protein STI-1; structur 29.5 1.5E+02 0.0052 24.2 7.4 103 22-126 17-125 (127)
399 2qfc_A PLCR protein; TPR, HTH, 29.4 2.1E+02 0.0073 27.3 9.6 96 14-110 76-183 (293)
400 2kck_A TPR repeat; tetratricop 29.3 1.3E+02 0.0043 23.0 6.7 88 19-110 12-105 (112)
401 1hxi_A PEX5, peroxisome target 29.2 87 0.003 25.5 5.7 70 50-128 25-96 (121)
402 4a9v_A PHOX; hydrolase, beta-p 28.8 2E+02 0.0068 31.3 9.5 62 620-691 475-548 (592)
403 3gyz_A Chaperone protein IPGC; 28.6 2.2E+02 0.0075 24.4 8.5 102 13-129 8-116 (151)
404 3urz_A Uncharacterized protein 28.5 2.5E+02 0.0087 25.1 9.5 105 14-127 5-132 (208)
405 3q49_B STIP1 homology and U bo 28.3 1.7E+02 0.0059 23.6 7.7 91 13-109 9-104 (137)
406 4fhn_B Nucleoporin NUP120; pro 27.1 49 0.0017 39.8 5.0 40 621-660 238-277 (1139)
407 3hym_B Cell division cycle pro 26.8 3.3E+02 0.011 25.8 10.7 35 93-128 170-204 (330)
408 2r5s_A Uncharacterized protein 26.8 2E+02 0.0068 24.9 8.1 109 14-129 7-120 (176)
409 1oyi_A Double-stranded RNA-bin 26.8 38 0.0013 26.3 2.5 42 13-56 15-58 (82)
410 1wjt_A Transcription elongatio 26.7 1.5E+02 0.005 24.1 6.2 56 53-129 25-80 (103)
411 4g26_A Pentatricopeptide repea 26.5 3.7E+02 0.013 28.5 11.5 103 16-123 108-216 (501)
412 3kci_A Probable E3 ubiquitin-p 26.4 5.1E+02 0.018 26.1 32.7 239 448-704 54-345 (389)
413 2wpv_A GET4, UPF0363 protein Y 26.4 1.5E+02 0.0052 29.4 7.6 63 46-128 17-80 (312)
414 2fo7_A Synthetic consensus TPR 26.3 2.3E+02 0.0079 22.1 8.5 103 19-128 7-114 (136)
415 3lpz_A GET4 (YOR164C homolog); 25.7 1.6E+02 0.0056 29.5 7.7 63 46-128 16-82 (336)
416 3f7f_A Nucleoporin NUP120; nuc 25.6 93 0.0032 34.9 6.4 37 447-483 222-259 (729)
417 1elr_A TPR2A-domain of HOP; HO 25.2 2.4E+02 0.008 22.1 7.9 110 16-127 7-122 (131)
418 3l6v_A GYRA, DNA gyrase subuni 25.1 5.5E+02 0.019 26.0 25.8 201 341-557 4-265 (370)
419 2xcb_A PCRH, regulatory protei 24.3 1.2E+02 0.0042 25.2 5.9 71 50-129 26-98 (142)
420 1elw_A TPR1-domain of HOP; HOP 23.8 1.3E+02 0.0044 23.2 5.7 73 50-129 12-84 (118)
421 3mvd_K Regulator of chromosome 23.5 6E+02 0.021 25.9 33.5 236 447-704 75-374 (423)
422 3gyz_A Chaperone protein IPGC; 23.1 1.4E+02 0.0047 25.8 6.0 95 10-110 33-132 (151)
423 1suu_A DNA gyrase subunit A; t 23.1 5.4E+02 0.018 25.2 27.7 201 341-557 5-231 (312)
424 2k9m_A RNA polymerase sigma fa 22.9 56 0.0019 27.9 3.2 87 13-111 21-121 (130)
425 4gco_A Protein STI-1; structur 22.9 1.2E+02 0.0043 24.8 5.5 72 51-129 22-93 (126)
426 3kci_A Probable E3 ubiquitin-p 22.6 6E+02 0.021 25.6 31.1 239 392-651 61-345 (389)
427 2fo7_A Synthetic consensus TPR 22.6 2.7E+02 0.0094 21.6 7.9 80 23-108 45-129 (136)
428 3qky_A Outer membrane assembly 22.2 2.3E+02 0.0079 26.4 8.1 102 9-111 11-126 (261)
429 1hxi_A PEX5, peroxisome target 22.2 1.5E+02 0.0051 24.1 5.9 89 15-109 19-112 (121)
430 1zvt_A Topoisomerase IV subuni 22.2 5.1E+02 0.017 24.6 11.3 149 496-650 1-162 (256)
431 2kck_A TPR repeat; tetratricop 22.0 1.4E+02 0.0046 22.8 5.5 72 51-129 15-88 (112)
432 2lni_A Stress-induced-phosphop 21.6 1.4E+02 0.0047 23.8 5.6 73 50-129 24-96 (133)
433 3upv_A Heat shock protein STI1 21.5 1.3E+02 0.0045 24.1 5.4 72 51-129 13-84 (126)
434 2kc7_A BFR218_protein; tetratr 21.5 1.6E+02 0.0055 22.2 5.7 56 50-110 8-63 (99)
435 3u3w_A Transcriptional activat 21.4 2.8E+02 0.0095 26.5 8.7 64 47-110 80-143 (293)
436 2yhc_A BAMD, UPF0169 lipoprote 21.2 2.9E+02 0.01 25.0 8.5 98 14-112 5-126 (225)
437 2vyi_A SGTA protein; chaperone 21.2 2.9E+02 0.01 21.4 8.9 103 18-127 17-124 (131)
438 1na3_A Designed protein CTPR2; 21.1 1.7E+02 0.0057 21.4 5.6 69 52-127 19-87 (91)
439 3qwp_A SET and MYND domain-con 20.2 3E+02 0.01 28.5 9.0 96 14-112 288-401 (429)
440 3iug_A RHO/CDC42/RAC GTPase-ac 20.1 1.2E+02 0.004 28.6 5.2 104 16-127 40-156 (229)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-45 Score=403.84 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=251.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.++|++++|+|++++|++|+.||+|+|||+.+++.. ..+ .+|...|.+++|+ +
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l--~~h~~~V~~v~~~~~~ 162 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTL--KGHTDSVQDISFDHSG 162 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEE--CCCSSCEEEEEECTTS
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEE--eccCCcEEEEEEcCCC
Confidence 39999999999999999999999999999998876541 111 1699999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
++|++|+ |++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|++|++||++++.++..+.+|...|.++.|
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC--------------------CcEEEE
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QIHLLS 594 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd--------------------g~~l~~ 594 (730)
+|++.++++|+.|++|++||+.+++. .. ...+|. ..|.+++|+|+ |.+|++
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKEC-----KA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCce-----ee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 99999999999999999999988532 22 345676 68999999996 567888
Q ss_pred -EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 595 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 595 -s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
+.|+.|++||++++.++..+.. |...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. +| ...|
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-------~h-~~~v 383 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------AH-EHFV 383 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------CC-SSCE
T ss_pred EeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-------CC-CCcE
Confidence 5899999999999999888864 68999999999999999999999999999999998888876 65 5568
Q ss_pred eeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 674 YPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+ +++|+| ++.+|++|+.||+|+||++.
T Consensus 384 ~--~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 384 T--SLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp E--EEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred E--EEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 8 999999 89999999999999999863
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-43 Score=404.62 Aligned_cols=349 Identities=14% Similarity=0.132 Sum_probs=274.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC----CcEEEeecCCC
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSN 413 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d----g~I~iWd~~~~ 413 (730)
.+++|||++||+|+.|++|+|||+.... ......+. +|.+.|.+++|+|+|++|++++.+ +.|++||....
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~---~~~~~~~~--~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~ 139 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTT---HILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 139 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTT---CCEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCc---ceeeEeec--ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence 5899999999999999999999985321 11122222 489999999999999999998875 47888885332
Q ss_pred ccccc--------------------cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEE
Q 004789 414 KQSLE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 470 (730)
Q Consensus 414 ~~~~~--------------------~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vw 470 (730)
..... ..+.+..+++|+..++++...+. +|...|.+++|+ |++|++++ |++|++|
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEECCCCCEEEEEECCCcEEEE
Confidence 11110 11223456899988887766543 799999999999 89999999 9999999
Q ss_pred EcCCceEEEEEc-------CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEE----------------------
Q 004789 471 SLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA---------------------- 520 (730)
Q Consensus 471 d~~t~~~~~~~~-------~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~---------------------- 520 (730)
|+.+++.+..+. +|...|.+++|+|+| +|++|+.|++|++||+.+++++.
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 999999998884 799999999999999 99999999999999998876543
Q ss_pred ---------------------EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee--------------
Q 004789 521 ---------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF-------------- 565 (730)
Q Consensus 521 ---------------------~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~-------------- 565 (730)
.+.+|...|++++|+|+|++|++++.|++|++||+.++.......
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 345789999999999999999999999999999998754321100
Q ss_pred ------------ec--c------------------------c-cc-----------------------CCCCCCCCeEEE
Q 004789 566 ------------LH--S------------------------F-QT-----------------------GLVPETTIVNHI 583 (730)
Q Consensus 566 ------------i~--~------------------------~-~~-----------------------~h~~~~~~v~~l 583 (730)
+. . + .. .|. ..+.++
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~---~~v~~v 454 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS---YNSSCV 454 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS---SCEEEE
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC---CCceEE
Confidence 00 0 0 00 011 357899
Q ss_pred EEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-ceEEEEeecc
Q 004789 584 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLT 661 (730)
Q Consensus 584 ~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~ 661 (730)
+|+|||++|++ +.|+.|++||+.++....... ..|...|.+++|+|||++|++++.|++|++|++.+ ++.......
T Consensus 455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~- 532 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW- 532 (611)
T ss_dssp EECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC-
T ss_pred EEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee-
Confidence 99999999999 589999999997765422222 35789999999999999999999999999999987 554322110
Q ss_pred cccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 662 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.+| ...|+ +++|+| ++++||+|+.|++|++|++.++.
T Consensus 533 ----~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 533 ----TFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ----CCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred ----eec-cccee--EEEECC-CCCEEEEEECCCcEEEEECCCcc
Confidence 134 66788 999999 89999999999999999998765
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.9e-41 Score=385.79 Aligned_cols=344 Identities=14% Similarity=0.142 Sum_probs=274.2
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
...+++|||+.||+++ +++|++|++.. ......+ .+|.+.|++++|+|+|++||+|+.||+|+|||+.++..
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~---~~~~~~~----~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGS---LTDTEIY----TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTC---SSCCEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCC---cccCeEe----cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 3457899999999987 57999999963 2222333 25999999999999999999999999999999965432
Q ss_pred ccc----ccccc-----------------------ceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc-EEEEee-C
Q 004789 416 SLE----EENVN-----------------------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-G 464 (730)
Q Consensus 416 ~~~----~~~~~-----------------------~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~-~l~s~s-d 464 (730)
... ..... ..+.+|+. +.....+ .+|...|.+++|+ +. .|++|+ |
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l--~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCccee--cCCCCCceEEEECCCCCeEEEEEeCC
Confidence 111 11111 13445553 3332222 3799999999999 44 599999 9
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc-------CCCCCeEEEEEeC
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSL 536 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~sp 536 (730)
++|++||..++++...+.+|...|.+++|+|+| +|++|+.|++|++||+.+++.+..+. +|.+.|.+++|+|
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 999999999999999999999999999999999 99999999999999999999988884 7999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeccee-------------------------------------ecccccCCCCCCCC
Q 004789 537 SLNVLVSSGADAQLCVWDAVGWKKLCSKF-------------------------------------LHSFQTGLVPETTI 579 (730)
Q Consensus 537 d~~~l~s~s~dg~I~vwd~~~~~~~~~~~-------------------------------------i~~~~~~h~~~~~~ 579 (730)
++++|++++.|++|++||+.+++...... ......+|. ..
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~---~~ 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN---KA 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS---SC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC---CC
Confidence 99999999999999999999865432111 011335777 79
Q ss_pred eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC------------------------------------------
Q 004789 580 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP------------------------------------------ 616 (730)
Q Consensus 580 v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~------------------------------------------ 616 (730)
|++++|+|+|++|++ +.|+.|++||+.+++....+..
T Consensus 327 v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 327 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence 999999999999999 5899999999987654332200
Q ss_pred ---------------C-----------------------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 617 ---------------D-----------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 617 ---------------~-----------------------~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
. .|...+.+++|+|||++|++|+.|+.|++||+.++......
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 0 01245678999999999999999999999999887543221
Q ss_pred ecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 659 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 659 ~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
. . +| ...|+ +++|+| ++++|++++.|++|++|++.+
T Consensus 487 ~-~-----~h-~~~v~--~v~fsp-dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 487 T-I-----VH-PAEIT--SVAFSN-NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp E-E-----EC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEEGGG
T ss_pred c-c-----CC-CCceE--EEEECC-CCCEEEEEcCCCCEEEEEcCC
Confidence 1 1 55 55688 999999 899999999999999999987
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=350.35 Aligned_cols=282 Identities=17% Similarity=0.230 Sum_probs=250.4
Q ss_pred CCCCcEEEEEEecC----CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 379 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 379 gh~~~V~~v~fspd----g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
+|.+.|++++|+|+ +.+|++|+.|++|+||++...... ..|. ..+|...|.+++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----------~~~~-----------l~gh~~~v~~~~~ 88 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD----------LQWS-----------LEGHQLGVVSVDI 88 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------EEEE-----------ECCCSSCEEEEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------eeee-----------eccCCCCEEEEEE
Confidence 59999999999985 678999999999999998655420 0111 1279999999999
Q ss_pred e--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE
Q 004789 455 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 530 (730)
Q Consensus 455 s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 530 (730)
+ +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ .|++|+.|+.|++||+++++....+..|...|.
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence 9 88999999 9999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 004789 531 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 609 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~ 609 (730)
+++|+|++++|++|+.||.|++||+++++ .+. ...+|. ..|.+++|+|++++|+++ .|+.|++||+++++
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGK-----LLH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 99999999999999999999999999853 333 455676 689999999999999995 89999999999998
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
....+. +|...|.+++|+|++.+|++|+.|+.|++||+.+++.+..+. +| ...|+ +++|+| ++.+|+
T Consensus 240 ~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~h-~~~v~--~v~~s~-~g~~l~ 306 (321)
T 3ow8_A 240 LAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-------DH-QDQVW--GVKYNG-NGSKIV 306 (321)
T ss_dssp EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CC-SSCEE--EEEECT-TSSEEE
T ss_pred eeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-------CC-CCcEE--EEEECC-CCCEEE
Confidence 888875 468999999999999999999999999999999999988876 55 55688 999999 899999
Q ss_pred EEeCCCcEEEEeCC
Q 004789 690 LGLTNGRVHVIEPL 703 (730)
Q Consensus 690 s~s~Dg~I~iWd~~ 703 (730)
+++.||.|++||..
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 99999999999963
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-40 Score=352.00 Aligned_cols=280 Identities=14% Similarity=0.182 Sum_probs=249.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|+|++|++|+.||+|++||+.++.. ..... .|...|.+++|+ +
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------~~~~~--~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------VHAIP--LRSSWVMTCAYAPSG 109 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------EEEEE--CSSSCEEEEEECTTS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------ceEee--cCCccEEEEEECCCC
Confidence 5999999999999999999999999999999876653 11111 588999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCc----eEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 457 SHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~----~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
++|++|+ |+.|++|++.++ .....+.+|...|.++.|++++.+++++.|+.|++||+.+++.+..+.+|.+.|.+
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEE
Confidence 9999999 999999999875 46677889999999999998888899999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 610 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~ 610 (730)
++|+|+++++++|+.|+.|++||++++. .+. ...+|. ..|.+++|+|++++|++ +.||.|++||+++++.
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGM-----CRQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCS-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCe-----eEE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 9999999999999999999999999853 233 456677 78999999999999999 5899999999999888
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 611 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 611 ~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+..+....+...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. || .+.|. +++|+| ++.+|+|
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~s~-dg~~l~s 329 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------GH-DNRVS--CLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEE
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-------cC-CCcEE--EEEEcC-CCCEEEE
Confidence 8777644445689999999999999999999999999999999888876 66 55688 999999 8999999
Q ss_pred EeCCCcEEEEe
Q 004789 691 GLTNGRVHVIE 701 (730)
Q Consensus 691 ~s~Dg~I~iWd 701 (730)
|+.||+|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999997
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.2e-40 Score=374.32 Aligned_cols=305 Identities=19% Similarity=0.256 Sum_probs=266.5
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||+.+++++.|++|++|+... .....+ .+|...|++++|+|++++|++++.|+.|++||......
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-- 337 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-- 337 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--
Confidence 47899999999999999999999742 222332 25999999999999999999999999999999754432
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
. .. .+|...|.+++|+ +++|++++ ||.|++||. +++.+..+.+|...|.+++|+
T Consensus 338 -------------------~-~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 338 -------------------Q-TL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp -------------------E-EE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEEC
T ss_pred -------------------E-EE--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEEC
Confidence 1 11 1688999999999 89999999 999999995 678889999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
|+| .|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... ..+. ...+|
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------~~~~-~~~~~ 466 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------QLLQ-TLTGH 466 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------CEEE-EEECC
T ss_pred CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------CEEE-EEcCC
Confidence 999 9999999999999995 5788889999999999999999999999999999999999765 2333 34567
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 574 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
. ..|.+++|+|++++|++ +.|+.|++||. +++.+..+. +|...|++++|+|||++|++++.||.|++||. ++
T Consensus 467 ~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~ 539 (577)
T 2ymu_A 467 S---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 539 (577)
T ss_dssp S---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred C---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence 6 78999999999999999 58999999996 688888886 46899999999999999999999999999996 57
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
+.+..+. || .+.|+ +++|+| ++++|+|++.||+|++||
T Consensus 540 ~~~~~~~-------~h-~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 QLLQTLT-------GH-SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEE-------CC-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 7777776 76 56688 999999 899999999999999997
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.3e-40 Score=354.75 Aligned_cols=314 Identities=14% Similarity=0.143 Sum_probs=228.8
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC------CCcEEEeecCCCc
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ------TATHKLWKWQSNK 414 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~------dg~I~iWd~~~~~ 414 (730)
.+++.++.+ +.+.....|++... .. .+|...|++++|||||++||+|+. |+.|++|+..++.
T Consensus 14 g~~~~~~~~-~g~~~~~~w~~p~~----~p-------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 14 GTENLYFQS-NGSSKGSAWGRPVT----AP-------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CccceEEec-CCCccccccCCCCC----Cc-------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 344444443 44577788987521 11 239999999999999999999998 5566666655443
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEE----EEcCCCCCe
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIA 488 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~----~~~~~~~~v 488 (730)
.... +..... +|...|.+++|+ ...+++++ ||+|++||+.+++... ...+|...|
T Consensus 82 ~~~~-----------------~~~~~~--~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V 142 (357)
T 4g56_B 82 PNES-----------------LCTAGV--QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV 142 (357)
T ss_dssp -CGG-----------------GCSEEE--ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCE
T ss_pred ccee-----------------EecccC--CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCE
Confidence 2110 000001 488899999999 55666666 9999999999887553 344799999
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceee
Q 004789 489 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
++++|+|++ +|++|+.|+.|++||+++++.+..+.+|...|++++|+|++. .+++++.|+.|++||+++++.....
T Consensus 143 ~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-- 220 (357)
T 4g56_B 143 KTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-- 220 (357)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--
Confidence 999999999 999999999999999999999999999999999999999874 7899999999999999986432211
Q ss_pred cccccCCCCCCCCeEEEEEecCC-cEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCe
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGH 643 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg-~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~ 643 (730)
. ...+. ..+.+++|+|++ .+|+++ .|+.|++||+++++.+..+.. |...|++++|+|++ ++|++|+.||+
T Consensus 221 ~--~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 221 D--FCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp C--CTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred e--ecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 1 22333 579999999975 567774 889999999999998888864 68999999999987 68999999999
Q ss_pred EEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 644 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 644 I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
|+|||+.+++.+..+ +| .+.|+ +++|+|.++.+|+||+.||+|++|++.+.
T Consensus 294 i~iwd~~~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 294 VAVLDADFSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEECTTSCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEECCCCcEeEEC--------CC-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999877654 56 56688 99999977899999999999999999764
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=346.64 Aligned_cols=288 Identities=14% Similarity=0.158 Sum_probs=231.2
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCC-----CCeeEeecccCCCCCCeeEEEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-----SKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
|...|.+++|+|||++|++++ |+++++||.... +|+.. .+...... .+...|.+++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW--------------LFKDPCAAPNEGFCSAGV---QTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE--------------EESSGGGTTCGGGCSEEE---EESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee--------------eeccccccCCcceeeeee---ccCCCEEEEEE
Confidence 788899999999999888777 778899974211 11110 01111000 36678999999
Q ss_pred e-CcEEEEee-CCEEEEEEcCCceEEEE----EcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCC
Q 004789 455 R-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 455 s-~~~l~s~s-dg~I~vwd~~t~~~~~~----~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 527 (730)
+ ++.|++|+ ||+|++||+.+++.... ..+|...|++++|+|+| +|++|+.|++|++||+.+++++..+.+|.+
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9 88888999 99999999999875443 44899999999999999 999999999999999999999999999999
Q ss_pred CeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-CcEEEEE-ecCcEEEEe
Q 004789 528 RITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYE 604 (730)
Q Consensus 528 ~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~s-~dg~I~iwd 604 (730)
.|++++|+|++ .++++++.|++|++||+++++.... +. ...+. ..+.+++|+|+ +++++++ .||.|++||
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~--~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IG--CSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeee--ee--cceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 99999999988 4789999999999999998643221 11 12232 46899999995 5677774 799999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecC
Q 004789 605 APTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 683 (730)
Q Consensus 605 ~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 683 (730)
+++++++..+.. |...|++++|+|+| ++|++|+.|++|+|||+.++++.. +. || .+.|+ +++|+|+
T Consensus 244 ~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H-~~~V~--~v~~sp~ 310 (344)
T 4gqb_B 244 TKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AH-RDFVR--DATWSPL 310 (344)
T ss_dssp SCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CC-SSCEE--EEEECSS
T ss_pred CCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CC-CCCEE--EEEEeCC
Confidence 999999988864 68999999999998 589999999999999999987654 32 66 55688 9999994
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 004789 684 EPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 684 ~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+..+|+|||.||+|++|++.+.
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC-
T ss_pred CCeEEEEEcCCCeEEEEECCCC
Confidence 4457889999999999999765
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.5e-39 Score=343.66 Aligned_cols=280 Identities=14% Similarity=0.192 Sum_probs=245.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
||.+.|++++|+|+|++|++|+.||+|++||..+.... .... .|...|.+++|+ |
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~---------------------~~~~--~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE---------------------HAVT--MPCTWVMACAYAPSG 118 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------------EEEE--CSSSCCCEEEECTTS
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc---------------------eEEe--cCCCCEEEEEECCCC
Confidence 49999999999999999999999999999997665431 1111 477899999999 9
Q ss_pred cEEEEee-CCEEEEEEcCCc------eEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCC
Q 004789 457 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~------~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
.+|++|+ |+.+++|++... .....+..|...|.+++|+|++ .|++|+.|++|++||+++++.+..+.+|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 9999999 999999998643 3455677899999999999999 9999999999999999999999999999999
Q ss_pred eEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 004789 529 ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 605 (730)
Q Consensus 529 V~~l~~sp--d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~ 605 (730)
|.+++|+| ++++|++|+.||.|++||+++++ .+. ...+|. ..|.+++|+|++.+|++ +.|+.|++||+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 99999987 56899999999999999999854 333 456677 78999999999999999 58999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 606 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 606 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
++++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+. || .+.|. +++|+| ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-------~h-~~~v~--~l~~sp-dg 338 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-------GH-ENRVS--TLRVSP-DG 338 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-------CC-SSCEE--EEEECT-TS
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-------CC-CCcEE--EEEECC-CC
Confidence 998887777654446689999999999999999999999999999998887775 66 56688 999999 89
Q ss_pred CEEEEEeCCCcEEEEe
Q 004789 686 NRIALGLTNGRVHVIE 701 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd 701 (730)
++|++|+.||+|+||+
T Consensus 339 ~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEcCCCCEEecC
Confidence 9999999999999996
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.2e-39 Score=336.19 Aligned_cols=282 Identities=17% Similarity=0.264 Sum_probs=241.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|+|++|++++.||+|++||+.++.. +.... .|..+|.+++|+ +
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARK 67 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGG
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------eEEee--ccCCcEEEEEEeCCC
Confidence 4999999999999999999999999999999876653 11111 588999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 533 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~ 533 (730)
++|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++++ .....+.+|...|.+++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 9999999 9999999999999999999999999999999999 9999999999999999887 55677889999999999
Q ss_pred EeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--CCcEEEE-EecCcEEEEeCCCCc
Q 004789 534 YSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLN 609 (730)
Q Consensus 534 ~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--dg~~l~~-s~dg~I~iwd~~~~~ 609 (730)
|+| ++..|++|+.|++|++||+++... ......+|. ..+..++|+| ++.+|++ +.|+.|++||+++++
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 999 678999999999999999987432 221334454 5789999987 6788988 589999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC-EE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RI 688 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~l 688 (730)
++..+.. |...|.+++|+|++.+|++|+.||.|++||+.+++.+..+. +| ...++ +++|+|.++. ++
T Consensus 220 ~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-------~~-~~~~~--~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 220 CVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-------VG-LERSW--CIATHPTGRKNYI 287 (304)
T ss_dssp EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-------CS-SSSEE--EEEECTTCGGGCE
T ss_pred cceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-------CC-CccEE--EEEECCCCCceEE
Confidence 9988864 68999999999999999999999999999999999988886 43 45677 9999994333 57
Q ss_pred EEEeCCCcEEEEeCCC
Q 004789 689 ALGLTNGRVHVIEPLE 704 (730)
Q Consensus 689 as~s~Dg~I~iWd~~~ 704 (730)
++|++| .+.+|++.+
T Consensus 288 asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 288 ASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEETT-EEEEEECC-
T ss_pred EEecCC-ceEEEEecc
Confidence 777655 577888764
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.7e-39 Score=337.35 Aligned_cols=292 Identities=16% Similarity=0.176 Sum_probs=245.1
Q ss_pred CCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
||.+.|++++|+|++ ++|++|+.|++|++|++...... .+..+..+. +|...|.+++|+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~~~~s~d 76 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFK--GHSHIVQDCTLTAD 76 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEE--CCSSCEEEEEECTT
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEe--CCcccEEEEEECCC
Confidence 599999999999965 89999999999999998643320 011111111 799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
+++|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++ +.++..+.+|...|.++.
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence 89999999 9999999999999999999999999999999999 99999999999999986 567788899999999999
Q ss_pred EeCC------CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC
Q 004789 534 YSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 606 (730)
Q Consensus 534 ~spd------~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~ 606 (730)
|+|. +..+++++.|+.|++||+++.+ ... ...+|. ..|.+++|+|+|++|++ +.||.|++||+.
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTE-----EEE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hhe-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9985 4589999999999999998843 222 356777 79999999999999999 589999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
+++.+..+.. ...|.+++|+|++.+|++++. +.+++|++..+.....+..........+...+. +++|+| +++
T Consensus 227 ~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~sp-dg~ 299 (319)
T 3frx_A 227 AKKAMYTLSA---QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV--SLAWSA-DGQ 299 (319)
T ss_dssp TTEEEEEEEC---CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEE--EEEECT-TSS
T ss_pred CCcEEEEecC---CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCccee--EEEECC-CCC
Confidence 9998888863 578999999999999998875 559999999988777665321111111233466 999999 899
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 004789 687 RIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 687 ~las~s~Dg~I~iWd~~~~ 705 (730)
+|++|+.||.|+||++.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999999764
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=342.36 Aligned_cols=297 Identities=15% Similarity=0.164 Sum_probs=239.7
Q ss_pred CCCC-cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~-~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
+|.+ .|++++|+|+|++||+|+.|++|+|||+.++... .......+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCSSCEEEEEECTT
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccCCcEEEEEECCC
Confidence 4877 9999999999999999999999999998765420 0111122699999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCc--eEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC---ceEEEEcCCCCC
Q 004789 456 GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR 528 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~--~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~ 528 (730)
+++|++|+ |++|++||+.++ +++..+.+|...|.+++|+|++ +|++|+.|+.|++||+.++ .++..+.+|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 89999999 999999999876 4678899999999999999999 9999999999999999876 456678889999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 607 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~ 607 (730)
|.+++|+|++++|++|+.|+.|++||.+++... ... ...+|. ..|++++|+|+|++|++ +.|++|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 999999999999999999999999999875321 222 456777 79999999999999999 5899999999632
Q ss_pred C---------------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE----EEEeecccccCCCC
Q 004789 608 L---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYAQPGT 668 (730)
Q Consensus 608 ~---------------~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~----~~~~~~~~~~~~gh 668 (730)
. +++..+.. .|...|.+++|+|++..|++++.|+.|++|+...+.. ...+.. ....+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~h 302 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA--HLHQAH 302 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE--EETTSS
T ss_pred CCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe--eecccc
Confidence 2 22333332 3688999999999999999999999999999876431 111110 111255
Q ss_pred cccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 669 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 669 ~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
...|+ +++|+|.++.+||||+.||+|++|++.+++..
T Consensus 303 -~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 303 -SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp -SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred -cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 56688 99999943469999999999999999887653
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.1e-38 Score=358.47 Aligned_cols=329 Identities=18% Similarity=0.233 Sum_probs=273.9
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||++||+++.|++|++||.. ......+ .+|.+.|.+++|+|+|++|++++.|+.+++|+........
T Consensus 63 l~fspdg~~las~~~d~~i~vWd~~----~~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~ 134 (577)
T 2ymu_A 63 VAFSPDGQTIASASDDKTVKLWNRN----GQLLQTL----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 134 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT----SCEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECC----CCEEEEE----ECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeee
Confidence 5799999999999999999999974 2333333 2599999999999999999999999999999965432211
Q ss_pred c-------------------------------------------------------------cccccceeeEecCCCCee
Q 004789 418 E-------------------------------------------------------------EENVNMESQLYQPSSKLV 436 (730)
Q Consensus 418 ~-------------------------------------------------------------~~~~~~~~~i~~~~~~~~ 436 (730)
. ..+....+++|+.. +..
T Consensus 135 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~ 213 (577)
T 2ymu_A 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQL 213 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCE
T ss_pred ccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcE
Confidence 0 00011234678754 333
Q ss_pred EeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004789 437 MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 512 (730)
Q Consensus 437 ~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd 512 (730)
+.... +|...|.+++|+ +++|++++ |+.|++||. +++.+..+.+|...|.+++|+|++ .+++++.|+.|++||
T Consensus 214 ~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 214 LQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 33332 689999999999 88999999 999999996 578888999999999999999999 999999999999999
Q ss_pred cCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 513 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 513 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
. +++.+..+.+|...|.+++|+|+++.+++++.|+.|++||.... .+. ...+|. ..|.+++|+|+++++
T Consensus 291 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------~~~-~~~~~~---~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 291 R-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------HLQ-TLTGHS---SSVWGVAFSPDGQTI 359 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEE-EECCCS---SCEEEEEECTTSSEE
T ss_pred C-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC------eeE-EEeCCC---CCEEEEEECCCCCEE
Confidence 6 47788889999999999999999999999999999999998763 233 345666 689999999999999
Q ss_pred EEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCccc
Q 004789 593 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 671 (730)
Q Consensus 593 ~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~ 671 (730)
+++ .|+.|++||. +++.+..+. .|...|.+++|+|+|++|++++.|+.|++||. +++.+..+. +| ..
T Consensus 360 ~~~~~dg~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-------~~-~~ 427 (577)
T 2ymu_A 360 ASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GH-SS 427 (577)
T ss_dssp EEEETTSEEEEEET-TCCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-------CC-SS
T ss_pred EEEeCCCEEEEEcC-CCCEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-------CC-CC
Confidence 995 8899999996 677777776 46899999999999999999999999999996 456666665 55 55
Q ss_pred ceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 672 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 672 ~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.|+ +++|+| ++++|++++.|+.|++|+...
T Consensus 428 ~v~--~~~~s~-d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 428 SVW--GVAFSP-DDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp CEE--EEEECT-TSSEEEEEETTSEEEEEETTS
T ss_pred CeE--EEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 688 999999 899999999999999999754
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.6e-38 Score=327.81 Aligned_cols=283 Identities=19% Similarity=0.248 Sum_probs=245.6
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|+|++|++|+.||.|++|+..+++. .... .+|...|.+++|+ +
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------EKTI--SGHKLGISDVAWSSDS 77 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEEE--CCCSSCEEEEEECTTS
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------chhh--ccCCCceEEEEEcCCC
Confidence 5999999999999999999999999999999876543 1111 1699999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
++|++++ |+.|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++++.+..+..|...|.+++|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 9999999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~ 613 (730)
+|+++++++++.||.|++||+++++. +......+. ..+..++|+|++++|++ +.|+.|++||+++++.+..
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 99999999999999999999998543 222333344 57999999999999999 5899999999999999888
Q ss_pred ecCCCCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 614 LVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~s-pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
+..+..........++ +++.+|++|+.||.|++||+.+++.+..+. || ...|. +++|+| +++++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~l~s~~ 298 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-------GH-TDVVI--STACHP-TENIIASAA 298 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECS-SSSEEEEEE
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-------cc-CCcEE--EEeecC-cCCceEEEE
Confidence 8754323233334444 678999999999999999999999888886 66 55677 999999 899999987
Q ss_pred --CCCcEEEEeCC
Q 004789 693 --TNGRVHVIEPL 703 (730)
Q Consensus 693 --~Dg~I~iWd~~ 703 (730)
.||+|++|+..
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999974
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.6e-38 Score=335.31 Aligned_cols=276 Identities=15% Similarity=0.203 Sum_probs=238.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||++|++|+.||+|++||... ......+. +|...|.+++|+|+|++|++|+.|+.|++|++.+.....
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~---~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYT---TNKVHAIP----LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTT---CCEEEEEE----CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCC---CCcceEee----cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 57899999999999999999999863 22333333 389999999999999999999999999999987653200
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
...... .+|...|.++.|+ +..+++++ |+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 134 -----------------~~~~~~--~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 134 -----------------RVSREL--AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp -----------------EEEEEE--ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred -----------------eeEEEe--cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 011111 1699999999999 77788888 99999999999999999999999999999999
Q ss_pred CC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
++ .+++|+.|+.|++||++++.++..+.+|...|++++|+|++++|++|+.||+|++||+++++.... +. ...+.
T Consensus 195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~--~~~~~ 270 (340)
T 1got_B 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YS--HDNII 270 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--EC--CTTCC
T ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE--Ec--cCCcc
Confidence 99 999999999999999999999999999999999999999999999999999999999998543211 11 11222
Q ss_pred CCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 575 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 575 ~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
..|.+++|+|+|++|+++ .|+.|++||+.+++.+..+. +|...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 271 ---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 271 ---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee--cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 479999999999999995 89999999999999888886 4789999999999999999999999999996
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.4e-39 Score=346.69 Aligned_cols=289 Identities=15% Similarity=0.210 Sum_probs=246.4
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
||.+.|++++|+|+|++|++|+.||+|+|||+.+++. ..... .|...|.+++|+ |
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---------------------~~~~~--~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---------------------THAIK--LHCPWVMECAFAPNG 120 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCCTTCCCCEECTTS
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------ceEEe--cCCCCEEEEEECCCC
Confidence 5999999999999999999999999999999876653 11111 588999999999 9
Q ss_pred cEEEEee-CCEEEEEEcCCce-------EEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEE----
Q 004789 457 SHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---- 522 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~-------~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~---- 522 (730)
++|++|+ |+.|++||+.+.. ....+.+|.+.|.++.|+|++ .|++|+.|++|++||+.+++.+..+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 9999999 9999999987532 345677899999999999986 8999999999999999999998887
Q ss_pred -cCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 004789 523 -KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 599 (730)
Q Consensus 523 -~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~ 599 (730)
.+|...|.+++|++ +++++++|+.|++|++||++... ..+. ...+|. +.|.+++|+|++++|+++ .|++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVR-TYHGHE---GDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCE-EECCCS---SCCCEEEECTTSSEEEEECSSSC
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceE-EECCcC---CCeEEEEEecCCCeEEEEcCCCe
Confidence 67999999999987 88999999999999999998521 2333 456787 799999999999999995 8999
Q ss_pred EEEEeCCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCccccee
Q 004789 600 IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 674 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 674 (730)
|++||+++++.+..+.... +...|.+++|+|+|++|++|+.||.|++||+.+++....+... ..+| .+.|.
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~h-~~~v~ 348 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL---QNSH-EGRIS 348 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS---CSSC-CCCCC
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc---cCCC-CCceE
Confidence 9999999999888775432 1235899999999999999999999999999999877665311 1255 66788
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 675 PLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 675 ~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+++|+| ++.+|+||+.||+|+||++...
T Consensus 349 --~l~~s~-dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 349 --CLGLSS-DGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp --EEEECS-SSSEEEEECTTSCEEEEECCSS
T ss_pred --EEEECC-CCCEEEEeeCCCCEEEEecCCC
Confidence 999999 8999999999999999999765
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-38 Score=346.46 Aligned_cols=272 Identities=20% Similarity=0.261 Sum_probs=240.8
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|+++++++|+.||+|++||+.... ....+ .+|.+.|++++|+|+|++|++|+.|++|++||+.+.+.
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---~~~~l----~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-- 184 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGD---FERTL----KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-- 184 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCC---CCEEE----CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEE----eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--
Confidence 5689999999999999999999997421 22222 25999999999999999999999999999999876543
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
+..+ .+|...|.+++|+ +++|++|+ |++|++||+.++.++..+.+|...|.++.++
T Consensus 185 -------------------~~~~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 185 -------------------IRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp -------------------EECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred -------------------eEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence 1111 1699999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC--------------------CCEEEEEeCCCcEEEE
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--------------------LNVLVSSGADAQLCVW 553 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd--------------------~~~l~s~s~dg~I~vw 553 (730)
|++ .+++|+.|+.|++||+.++++...+.+|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 999 9999999999999999999999999999999999999996 6789999999999999
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
|++++. .+. ...+|. +.|.+++|+|+|++|++ +.|+.|++||+.+++++..+. .|...|++++|+|++
T Consensus 324 d~~~~~-----~~~-~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 324 DVSTGM-----CLM-TLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTA 392 (410)
T ss_dssp ETTTTE-----EEE-EEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSS
T ss_pred ECCCCc-----eEE-EEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEcCCC
Confidence 999853 333 456777 78999999999999999 589999999999999888886 468899999999999
Q ss_pred CEEEEEEcCCeEEEEECC
Q 004789 633 KCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 633 ~~l~sgs~dg~I~iwd~~ 650 (730)
.+|++|+.||.|++|+++
T Consensus 393 ~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEETTSEEEEEC--
T ss_pred CEEEEEeCCCcEEEEeCC
Confidence 999999999999999863
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=342.10 Aligned_cols=321 Identities=17% Similarity=0.189 Sum_probs=265.8
Q ss_pred ccCCCCCCC-eeEeecCCCcEEEEee----cCCCCC---cceeeeecCCC------CCCCcEEEEEEecCCCEEEEEeCC
Q 004789 337 ESTSLPDAD-SAVCAKSLEKSVNLKL----QLINEP---SECRTLLLPDN------SFGGRVVRLIYSHSGDFLVALTQT 402 (730)
Q Consensus 337 ~~~~spdg~-~lat~~~dg~i~lWd~----~~~~~~---~~~~~~~l~~~------gh~~~V~~v~fspdg~~L~s~s~d 402 (730)
...++|||+ +||+++.||.|++|++ ...... .....+..+.. +|.+.|.+++|+|+|++|++++.|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 129 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN 129 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence 368999999 9999999999999999 532210 01222221111 268899999999999999999999
Q ss_pred CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEE
Q 004789 403 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 479 (730)
Q Consensus 403 g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~ 479 (730)
|.|++||.. +.. ..... +|...|.+++|+ +++|++++ ||.|++||+.+++.+.
T Consensus 130 g~i~i~~~~-~~~---------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 130 GELRLWNKT-GAL---------------------LNVLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp SCEEEEETT-SCE---------------------EEEEC--CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CeEEEEeCC-CCe---------------------eeecc--CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 999999832 221 11111 589999999999 88999999 9999999999999999
Q ss_pred EEcCCCCC---------------eEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEE
Q 004789 480 TFANPPPI---------------ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 544 (730)
Q Consensus 480 ~~~~~~~~---------------v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 544 (730)
.+..+... +.+++|+|++.+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 99888776 999999998888899999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe
Q 004789 545 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 623 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v 623 (730)
+.|+.|++||+++++ .+. ...+|. ..|.+++|+|++ .+++ +.|+.|++||+++++.+..+.. |...+
T Consensus 266 ~~d~~i~i~d~~~~~-----~~~-~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i 333 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGN-----SQN-CFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPI 333 (425)
T ss_dssp ETTSCEEEECSSSBS-----CSE-EECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCE
T ss_pred cCCCEEEEEECCCCc-----cce-EecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccE
Confidence 999999999998843 222 334565 689999999999 7776 5899999999999998888764 58899
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCce--------------------EEEEeecccccCCCCccc-ceeeEEEEEec
Q 004789 624 TYATYSCDGKCIYVSCKSGHVKVFDTSTLE--------------------LRCQINLTAYAQPGTISL-ELYPLVIAAHP 682 (730)
Q Consensus 624 ~~~~~spdg~~l~sgs~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~gh~~~-~v~~~~v~~sp 682 (730)
.+++|+|++++|++++.||.|++||+.+++ .+..+. +|... .|. +++|+|
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~--~~~~s~ 404 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-------SSQDNDYIF--DLSWNC 404 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-------CTTCCCCEE--EEEECT
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-------CcccCCceE--EEEccC
Confidence 999999999999999999999999999887 666665 55333 678 999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 004789 683 LEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~ 703 (730)
++++|++++.||.|++|++.
T Consensus 405 -~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 -AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -TSSEEEEEESSSCCEEEECC
T ss_pred -CCceEEEEecCceEEEEeec
Confidence 89999999999999999985
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=330.60 Aligned_cols=269 Identities=18% Similarity=0.202 Sum_probs=236.4
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
++.+|++|+.|++|++|++... .......+ .||...|.+++|+|++.++++++.|++|++||+.+++..
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~---~~~~~~~l--~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~------ 115 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDE---RLDLQWSL--EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI------ 115 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETT---EEEEEEEE--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred CCCEEEEEcCCCCEEEEECCCC---Ceeeeeee--ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE------
Confidence 5789999999999999999631 11122233 359999999999999999999999999999998776541
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 498 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~ 498 (730)
.... .|...+.+++|+ +++|++++ +|.|++||+.+++....+..|...|.+++|+|+| +
T Consensus 116 ---------------~~~~--~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 116 ---------------KSID--AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp ---------------EEEE--CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred ---------------EEEe--CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 1111 477889999999 89999999 9999999999999999999999999999999999 9
Q ss_pred EEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCC
Q 004789 499 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 499 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
|++|+.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.|+.|++||+++++ .+. ...+|. .
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-----~~~-~~~~h~---~ 249 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----LAG-TLSGHA---S 249 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-----EEE-EECCCS---S
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-----eeE-EEcCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999998843 233 456777 7
Q ss_pred CeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 579 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
.|.+++|+|++++|++ +.|+.|++||+.+++++..+. +|...|.+++|+|+|++|++++.||.|++||..
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8999999999999999 589999999999999998886 468999999999999999999999999999963
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-37 Score=328.07 Aligned_cols=315 Identities=15% Similarity=0.164 Sum_probs=263.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+++|||+.++++..++.+..|.... ....+... +|.+.|++++|+|+|++|++++ ||.|++|++.++....
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPR-----HARQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCS-----EEEEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred EEECCCCCEEEeecCCCcEeccccCC-----ccccceec--cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 57899999999998888777775532 11111111 3999999999999999999998 9999999998765311
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce--EEEEEcCCCCCeEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFI 492 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~--~~~~~~~~~~~v~~i~ 492 (730)
. . ......+|...|.+++|+ +++|++++ ||.|++||+.+++ ....+..|...|.+++
T Consensus 87 ~-----------------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 87 P-----------------V-SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp C-----------------S-EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred e-----------------e-ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 1 0 000011488999999999 88999999 9999999999887 6677888999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
|+|++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++.... .
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~-- 221 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----H-- 221 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----E--
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-----e--
Confidence 99999 999999999999999999999999999999999999999999999999999999999998643221 1
Q ss_pred CCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
.+. ..+.+++|+|++++++++ .++.|++||+++++.. .+. .|...+.+++|+|++++|++++.||.|++||+.
T Consensus 222 ~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 DFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 233 579999999999999995 7899999999887754 333 468999999999999999999999999999999
Q ss_pred CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 651 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 651 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+++.+.... | ...|. +++|+| ++++|++++.||.|++|++.
T Consensus 296 ~~~~~~~~~--------~-~~~v~--~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 296 YGASIFQSK--------E-SSSVL--SCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred CCeEEEEec--------C-CCcEE--EEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 998775442 2 45577 999999 89999999999999999973
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-39 Score=349.45 Aligned_cols=333 Identities=11% Similarity=0.060 Sum_probs=266.0
Q ss_pred cccCCCCCCC-eeEee----------cCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCc
Q 004789 336 RESTSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 404 (730)
Q Consensus 336 ~~~~~spdg~-~lat~----------~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~ 404 (730)
...+++|||+ +++++ +.|++|++|++........... ..|...|.+++|+|+|++|++++.||.
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-----LQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-----CCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-----EecCCceEEEEECCCCCeEEEEccCCe
Confidence 3468999997 99999 8999999999974321111222 238999999999999999999999999
Q ss_pred EEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCce----
Q 004789 405 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---- 476 (730)
Q Consensus 405 I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~---- 476 (730)
|++|++..... ......... +|...|.+++|+ +++|++++ ||.|++||+.+++
T Consensus 91 v~vw~~~~~~~-----------------~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 91 LELYSTNEANN-----------------AINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EEEECCSSTTS-----------------CCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EEEeecccccc-----------------cccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 99999876321 001111111 699999999999 57899999 9999999999886
Q ss_pred --EEEE---EcCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEecCCCceEEEEcCC------CCCeEEEEEeCCC-CEEE
Q 004789 477 --TLAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCLAYSLSL-NVLV 542 (730)
Q Consensus 477 --~~~~---~~~~~~~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~~~~~~~~~h------~~~V~~l~~spd~-~~l~ 542 (730)
.... +..|...|.+++|+|+ + .+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 3333 3578899999999999 5 9999999999999999999999988876 7899999999997 6899
Q ss_pred EEeCCC---cEEEEEcCCCceecceeeccccc-CCCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 004789 543 SSGADA---QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 543 s~s~dg---~I~vwd~~~~~~~~~~~i~~~~~-~h~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~iwd~~~~~~~~~~~~ 616 (730)
+++.|+ .|++||++++. ..+. ... +|. ..|.+++|+| ++++|++ +.|+.|++||+++++.+..+..
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~----~~~~-~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNAN----TPLQ-TLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp EEECCSSSCCCCEEETTSTT----SCSB-CCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred EEECCCCCceEEEEeCCCCC----CCcE-EeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 999998 99999999842 2333 344 676 7899999999 8999998 5899999999999999888864
Q ss_pred CCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEeec---------ccccCCCC------------------
Q 004789 617 DKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT------------------ 668 (730)
Q Consensus 617 ~~h~~~v~~~~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~~~~~~gh------------------ 668 (730)
|...|.+++|+|++ .+|++++.||.|++|++.++........ ..+...+.
T Consensus 304 --~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 304 --RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp --SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred --CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 68899999999999 8999999999999999987653221100 00000010
Q ss_pred cccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 669 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 669 ~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+...+. +++|+| ++++|++++.||.|+||++.+.
T Consensus 382 ~~~~~~--~~~~s~-dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 382 YGEPSP--AAHWAF-GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TCCCSC--CCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred ccCCcc--ceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence 244565 899999 8999999999999999999865
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=325.69 Aligned_cols=288 Identities=16% Similarity=0.132 Sum_probs=225.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|+ +||+|+.|++|++|++..+.. .........+|...|.+++|+ +
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------~~~~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------TLIDVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------EEEEEECTTCCCSCEEEEEECTTS
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------EEEEEEecCCccCCEEEEEECCCC
Confidence 49999999999998 899999999999999876432 111111111499999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCC-------ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC----CceEEEEc
Q 004789 457 SHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLK 523 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t-------~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~----~~~~~~~~ 523 (730)
++|++|+ |++|++||+.. .+.+..+.+|...|.+++|+|+| +|++|+.|++|++||++. .+++..+.
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 9999999 99999999853 45678889999999999999999 999999999999999943 25678889
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC--CcEEEE-EecCcE
Q 004789 524 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQI 600 (730)
Q Consensus 524 ~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd--g~~l~~-s~dg~I 600 (730)
+|...|.+++|+|++.+|++|+.|++|++||..++.. ..+. ...+|. +.|.+++|+|+ +..|++ +.|++|
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 9999999999999999999999999999999876421 2333 456787 79999999998 678888 589999
Q ss_pred EEEeCCCC--------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE--EEEeecccccCCCCcc
Q 004789 601 DVYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--RCQINLTAYAQPGTIS 670 (730)
Q Consensus 601 ~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~~~gh~~ 670 (730)
++||+.++ .....+. ..|...|.+++|++++ +|++++.||.|++|+..+++. ..... .+|..
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~h~~ 295 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LCHGV 295 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CTTTT
T ss_pred EEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------ccccc
Confidence 99998654 2333333 2378999999999765 899999999999999988742 22221 15533
Q ss_pred cceeeEEEEEecC-CCCEEEEEeCCCcEEEEeCCC
Q 004789 671 LELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 671 ~~v~~~~v~~sp~-~~~~las~s~Dg~I~iWd~~~ 704 (730)
..|+ +++|+|. ++++||+|+.||+|+||++.+
T Consensus 296 ~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3678 9999994 478999999999999999865
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-37 Score=327.52 Aligned_cols=292 Identities=16% Similarity=0.185 Sum_probs=234.5
Q ss_pred CCCCcEEEEEE-----ec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEE
Q 004789 379 SFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 452 (730)
Q Consensus 379 gh~~~V~~v~f-----sp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l 452 (730)
||.+.|++++| ++ ++++|++|+.|++|++||+....... ..+...... .+|...|.++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l--~~h~~~V~~~ 82 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKAL--TGHNHFVSDL 82 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEE--CCCSSCEEEE
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchh--ccCCCceEEE
Confidence 59999999999 77 99999999999999999987654210 011112211 2799999999
Q ss_pred EEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc---CC
Q 004789 453 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GH 525 (730)
Q Consensus 453 ~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~---~h 525 (730)
+|+ +.++++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.. ....... +|
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~ 161 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENH 161 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCC
Confidence 999 88999999 9999999999999999999999999999999999 999999999999999984 3333333 68
Q ss_pred CCCeEEEEEeCCC----------CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 526 QNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 526 ~~~V~~l~~spd~----------~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
...|.+++|+|++ .++++++.|+.|++||... .... ...+|. ..|.+++|+|+|++|++
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKYIATG 231 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCEEEEE
Confidence 8999999999987 7899999999999999543 2223 355777 78999999999999999
Q ss_pred EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEE--Eeeccc----ccCCC
Q 004789 595 IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTA----YAQPG 667 (730)
Q Consensus 595 s~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~----~~~~g 667 (730)
+.|+.|++||+.+ ......+. +...|.+++|+|++.++++| .|+.|++|++.+++... .+.... ....|
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred cCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 5899999999954 33444442 35679999999999988755 58889999998876543 332111 01124
Q ss_pred CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 668 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 668 h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
| ...|. +++|+| ++++|++|+.||.|++|++.++
T Consensus 308 ~-~~~v~--~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 K-NPQCT--SLAWNA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp S-CCCEE--EEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred C-CCceE--EEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence 4 44577 999999 8999999999999999998765
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=332.03 Aligned_cols=279 Identities=15% Similarity=0.101 Sum_probs=225.3
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecC-----C---CCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEee
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQL-----I---NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 409 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~-----~---~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd 409 (730)
.+++|||+.|++++ |+++|+||... . .....+... ..|...|.+++|+|++ .|++|+.||+|+|||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG----VQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE----EEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee----eccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 57999999999887 78889887421 0 001111111 1267889999999996 588999999999999
Q ss_pred cCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCC
Q 004789 410 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 486 (730)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~ 486 (730)
+.+++.... .. ....+|...|++++|+ |++|++|+ |++|++||+.+++++..+.+|..
T Consensus 110 ~~~~~~~~~------------------~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 110 LDENETLIV------------------SK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ECTTSSCEE------------------EE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ccCCCceeE------------------ee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 987765211 00 0111699999999999 89999999 99999999999999999999999
Q ss_pred CeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEc--CCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCcee
Q 004789 487 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKL 561 (730)
Q Consensus 487 ~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~ 561 (730)
.|++++|+|++ .|++|+.|++|++||+++++....+. .|...+.+++|+|+ ++++++|+.||.|++||+++++
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-- 248 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-- 248 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--
Confidence 99999999998 78999999999999999999888774 35667999999995 5788999999999999999853
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC-EEEEE
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVS 638 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg-~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~sg 638 (730)
.+. ...+|. ..|++++|+|++ ++|++ +.|++|++||+.+++.+. + .+|...|++++|+|++. +|++|
T Consensus 249 ---~~~-~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~--~~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 249 ---CVL-SSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S--QAHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp ---CCE-EEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E--CCCSSCEEEEEECSSSTTEEEEE
T ss_pred ---EEE-EEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E--cCCCCCEEEEEEeCCCCeEEEEE
Confidence 333 456777 799999999998 46777 589999999999887653 3 35799999999999986 67799
Q ss_pred EcCCeEEEEECCCce
Q 004789 639 CKSGHVKVFDTSTLE 653 (730)
Q Consensus 639 s~dg~I~iwd~~~~~ 653 (730)
+.||+|++|++.+..
T Consensus 319 s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GWDHQVVHHVVPTEP 333 (344)
T ss_dssp ETTSCEEEEECCC--
T ss_pred cCCCeEEEEECCCCC
Confidence 999999999998754
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-37 Score=324.75 Aligned_cols=279 Identities=15% Similarity=0.229 Sum_probs=234.2
Q ss_pred cCCCCCC-CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 338 STSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spdg-~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
..++|++ ++|++|+.|++|++|++.............+ .+|...|.+++|+|+|++|++|+.|++|++||+.+++.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~- 99 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF--KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET- 99 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEE--eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe-
Confidence 4678865 8999999999999999964221111111122 25999999999999999999999999999999877654
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
+..+. +|...|.+++|+ +.+|++|+ |++|++||++ +.++..+.+|...|.++.|
T Consensus 100 --------------------~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 100 --------------------YQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp --------------------EEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEE
T ss_pred --------------------eEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEE
Confidence 11111 699999999999 88999999 9999999996 6678888999999999999
Q ss_pred cCC------C-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 494 LPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 494 spd------g-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
+|. + .+++|+.|+.|++||+++++....+.+|...|++++|+|++++|++|+.||.|++||+.+++. +
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-----~ 231 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA-----M 231 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----E
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----E
Confidence 984 5 799999999999999999999999999999999999999999999999999999999998543 2
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC------CCCCCeEEEEEecCCCEEEEEEc
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------KMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~------~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
. ....+ ..|.+++|+|++.+++++.++.+++|++..+..+..+... .+...+.+++|+|||++|++|+.
T Consensus 232 ~-~~~~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 232 Y-TLSAQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp E-EEECC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred E-EecCC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 2 22233 4799999999999999988888999999887776665432 23567999999999999999999
Q ss_pred CCeEEEEECCCc
Q 004789 641 SGHVKVFDTSTL 652 (730)
Q Consensus 641 dg~I~iwd~~~~ 652 (730)
||.|++||+.++
T Consensus 307 Dg~i~vWd~~t~ 318 (319)
T 3frx_A 307 DNVIRVWQVMTA 318 (319)
T ss_dssp TSCEEEEEEEEC
T ss_pred CceEEEEEEeec
Confidence 999999998764
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=327.43 Aligned_cols=292 Identities=14% Similarity=0.149 Sum_probs=230.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+++|||++||+|+.|++|+||++.... ..+..... .+|.+.|.+++|+|+|++|++|+.|++|++|++..+..
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~--~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-- 95 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDS--WICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-- 95 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTE--EEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E--
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCc--ceeeeeec--cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe--
Confidence 5789999999999999999999996311 11122222 35999999999999999999999999999999765432
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCc---eEEEEEcCCCCCeEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYF 491 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~---~~~~~~~~~~~~v~~i 491 (730)
.++..+ .+|...|.+++|+ +++|++|+ |++|++||+.++ .++..+.+|...|.++
T Consensus 96 -----------------~~~~~~--~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 96 -----------------ECVTTL--EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp -----------------EEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred -----------------EEEEEc--cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 111111 2699999999999 89999999 999999999875 4567788999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEecCCCc--eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee-------
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL------- 561 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~------- 561 (730)
+|+|++ +|++|+.|+.|++||..+++ +...+.+|...|++++|+|++++|++|+.|++|++||.......
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec
Confidence 999999 99999999999999998875 45778899999999999999999999999999999997432110
Q ss_pred ---cceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce----ee---eecCCCCCCCeEEEEEec
Q 004789 562 ---CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH----TS---QLVPDKMDLPITYATYSC 630 (730)
Q Consensus 562 ---~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~----~~---~~~~~~h~~~v~~~~~sp 630 (730)
....+......|. ..|.+++|+|++..|++ +.|+.|++|+...... .. .....+|...|.+++|+|
T Consensus 237 ~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp --CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred cCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 0112221222355 68999999999999998 5899999999865431 11 111235789999999999
Q ss_pred CC-CEEEEEEcCCeEEEEECCCceEEEE
Q 004789 631 DG-KCIYVSCKSGHVKVFDTSTLELRCQ 657 (730)
Q Consensus 631 dg-~~l~sgs~dg~I~iwd~~~~~~~~~ 657 (730)
++ .+|++|+.||.|++|++.+++....
T Consensus 314 ~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 314 KEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SSTTEEEEEETTSCEEEEEECC------
T ss_pred CCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 98 5999999999999999998775443
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.6e-37 Score=331.17 Aligned_cols=303 Identities=14% Similarity=0.140 Sum_probs=239.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc-cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
|.+.|++++|+|||++||+|+ ++.+++|++.++..... ..... ...++. .........+...|.+++|+ |
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~---~~~~~~---~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA---ANKDPE---NLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------------CCCCBEEEEEECTTS
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc---cccccc---cccccccCCCceeEEEEEECCCC
Confidence 999999999999999999876 78999999988765322 00000 000000 00000001244569999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 534 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 534 (730)
++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++++++...+. +...+.+++|
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence 9999999 9999999999999999999999999999999999 99999999999999999999888776 5678999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEEcCCCceecceeec-ccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc--
Q 004789 535 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-- 609 (730)
Q Consensus 535 sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~-~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~-- 609 (730)
+| ++++|++|+.|+.|++||++++......... ....+|. ..|.+++|+|+|++|++ +.|+.|++||+++..
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 99 8999999999999999999986533211110 0124666 78999999999999999 489999999997642
Q ss_pred ----------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEE
Q 004789 610 ----------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA 679 (730)
Q Consensus 610 ----------~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 679 (730)
+...+. +|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+. || .+.|. +++
T Consensus 292 ~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~v~ 359 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------GH-RNSVI--SVA 359 (393)
T ss_dssp ---------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEE
T ss_pred ccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-------CC-CCCEE--EEE
Confidence 333443 468899999999999999999999999999999999888876 66 55688 888
Q ss_pred EecC-----CCCEEEEEeCCCcEEEEeCCCC
Q 004789 680 AHPL-----EPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 680 ~sp~-----~~~~las~s~Dg~I~iWd~~~~ 705 (730)
|+|. ++++||||+.||+|+||++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 8752 5789999999999999998653
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.5e-37 Score=327.09 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=235.6
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++||+++||+|+.||+|++||... ......+. .|...|.+++|+|+|.+|++|+.|+.+++|++.......
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~---~~~~~~~~----~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFT---TNKEHAVT----MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEE----CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCC---CCcceEEe----cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 57899999999999999999999863 22233333 288899999999999999999999999999986543200
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
. ......+. +|...|.+++|+ +..|++++ |++|++||+++++.+..+.+|...|.+++|+
T Consensus 143 ~------------~~~~~~~~-----~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 143 M------------AAKKKSVA-----MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp S------------GGGCEEEE-----ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred c------------cccceeee-----ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 0 00001111 599999999999 77899999 9999999999999999999999999999998
Q ss_pred C--CC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc
Q 004789 495 P--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 495 p--dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
| +| .|++|+.||.|++||+++++++..+.+|...|++++|+|++.+|++|+.|++|++||++++..... +. ..
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~--~~ 281 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI--YS--KE 281 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--EC--CT
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE--Ec--CC
Confidence 7 46 999999999999999999999999999999999999999999999999999999999998542211 11 11
Q ss_pred CCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
.+. ..+.+++|+|+|++|+++ .|+.|++||+.+++.+..+. +|...|.+++|+|+|++|++|+.||.|++|+
T Consensus 282 ~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred Ccc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 122 468999999999999995 89999999999999888775 4789999999999999999999999999996
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-37 Score=331.81 Aligned_cols=281 Identities=11% Similarity=0.064 Sum_probs=224.2
Q ss_pred cCCCCCCCeeEeecC------CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecC
Q 004789 338 STSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 411 (730)
Q Consensus 338 ~~~spdg~~lat~~~------dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~ 411 (730)
.++||||++||+++. |++|++|+............. ..+|.+.|.+++|+|++. +++++.||+|+|||+.
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~---~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA---GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEIL 123 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE---EEECSSCEEEEEEETTTE-EEEEETTSCEEEC---
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc---cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecc
Confidence 589999999999997 678999987643222211111 124899999999999987 6678899999999988
Q ss_pred CCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCe
Q 004789 412 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 488 (730)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v 488 (730)
+++.... ... ...+|...|.+++|+ +++|++|+ |+.|++||+.+++.+..+.+|...|
T Consensus 124 ~~~~~~~---------------~~~----~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 124 EKESLLV---------------NKF----AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp -----CC---------------CCE----EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ccceeEE---------------Eee----ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 7654111 000 011699999999999 89999999 9999999999999999999999999
Q ss_pred EEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEc--CCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecc
Q 004789 489 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 489 ~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
++++|+|++ .+++++.|+.|++||+++++....+. .|...+++++|+|++ .+|++|+.|+.|++||+++++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---- 260 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---- 260 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----
Confidence 999999998 88999999999999999988776553 467889999999974 688999999999999999853
Q ss_pred eeecccccCCCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEEc
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCK 640 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg-~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~ 640 (730)
.+. ...+|. ..|++++|+|++ ++|++ +.|++|+|||+++++.+..+ +|...|++++|+| ++.+|++|+.
T Consensus 261 -~~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 261 -SAQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp -GCE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEET
T ss_pred -EeE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC
Confidence 233 345666 789999999987 56777 58999999999999887655 5799999999998 8999999999
Q ss_pred CCeEEEEECCCce
Q 004789 641 SGHVKVFDTSTLE 653 (730)
Q Consensus 641 dg~I~iwd~~~~~ 653 (730)
||+|++|++.+..
T Consensus 333 Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 333 DHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEECC---
T ss_pred CCeEEEEECCCCC
Confidence 9999999997643
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-37 Score=336.71 Aligned_cols=290 Identities=13% Similarity=0.121 Sum_probs=237.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||++|++|+.||+|++||+.. ......+. +|...|.+++|+|+|++|++|+.|+.+++|++.+.....
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~~---~~~~~~~~----~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNALT---SQKTHAIK----LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTT---TEEEEEEE----CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC---CccceEEe----cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence 57899999999999999999999863 22233333 399999999999999999999999999999987643200
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEE-----cCCCCCe
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-----ANPPPIA 488 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~-----~~~~~~v 488 (730)
. ...... ...+|...|.++.|. +..|++|+ |++|++||+.+++.+..+ .+|...|
T Consensus 145 ~--------------~~~~~~--~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 145 G--------------NMPVSR--VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp C--------------SSTTCC--BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred C--------------Ccccee--eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 0 000011 112799999999998 45799999 999999999999999887 5789999
Q ss_pred EEEEEcC-CC-eEEEEECCCcEEEEecC-CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceeccee
Q 004789 489 TYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 489 ~~i~~sp-dg-~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 565 (730)
.+++|++ ++ .|++|+.|+.|++||++ .++.+..+.+|.+.|++++|+|++++|++|+.||+|++||++++.......
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 9999987 66 99999999999999998 457888999999999999999999999999999999999999865432211
Q ss_pred ecc-cccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecC--CCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 566 LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP--DKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 566 i~~-~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~--~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
... ....+. ..|++++|+|+|++|+++ .||.|++||+.+++.+..+.. .+|...|.+++|+|+|++|++|+.|
T Consensus 289 ~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 289 REPDRNDNEL---PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp CCCSSSCCSS---CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred cccccccccc---CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence 110 001111 358999999999999996 899999999998888766632 3578999999999999999999999
Q ss_pred CeEEEEECCCce
Q 004789 642 GHVKVFDTSTLE 653 (730)
Q Consensus 642 g~I~iwd~~~~~ 653 (730)
|.|++|++...+
T Consensus 366 ~~i~iW~~~~~~ 377 (380)
T 3iz6_a 366 KNLKIWAFSGHR 377 (380)
T ss_dssp SCEEEEECCSSS
T ss_pred CCEEEEecCCCc
Confidence 999999987653
No 31
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-37 Score=364.25 Aligned_cols=349 Identities=11% Similarity=0.065 Sum_probs=253.6
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
...++| |++|++++.|++|++||+.. ......+. |.+.|++++|+|++++|++|+.||.|++||+.++...
T Consensus 63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~---~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 63 EMRFVK-GIYLVVINAKDTVYVLSLYS---QKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp EEEEET-TTEEEEEETTCEEEEEETTT---CSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEcC-CCEEEEEECcCeEEEEECCC---CcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 357889 88999999999999999973 22333433 6789999999999999999999999999999876531
Q ss_pred -----------c--c--------------------cccccceeeEecCCCCeeEeeccc----------------CCCCC
Q 004789 417 -----------L--E--------------------EENVNMESQLYQPSSKLVMTNDIA----------------ADPKD 447 (730)
Q Consensus 417 -----------~--~--------------------~~~~~~~~~i~~~~~~~~~~~~~~----------------~~h~~ 447 (730)
. . .......+ +||..++.....+.. .+|..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 0 0 01122345 899998886654431 12457
Q ss_pred CeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEE--Ec---C-------------CCCCeEEEEEc----CCC--eEE
Q 004789 448 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQD--LFA 500 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~--~~---~-------------~~~~v~~i~~s----pdg--~l~ 500 (730)
.|.+++|+ |.+|++++ ||.|++||+.+++++.. +. . |...|++++|+ |++ .++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 89999999 89999999 99999999999988764 21 1 24478999994 554 566
Q ss_pred EEECCC-----cEEEEe---------------------------------------------------------------
Q 004789 501 FGFDDS-----SILVHC--------------------------------------------------------------- 512 (730)
Q Consensus 501 sgs~dg-----~I~iwd--------------------------------------------------------------- 512 (730)
+|+.|. .+.+|+
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence 665431 444444
Q ss_pred --------cCCCceEEE-----------------------------------------EcCCCCCeEEEEEeCCCCEEEE
Q 004789 513 --------PCTKKTKAK-----------------------------------------LKGHQNRITCLAYSLSLNVLVS 543 (730)
Q Consensus 513 --------~~~~~~~~~-----------------------------------------~~~h~~~V~~l~~spd~~~l~s 543 (730)
+.++..... +.+|...+.+++|+|++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 333321110 1122233334455788999999
Q ss_pred EeCCCcEEEEEcCCCceecceeec-----ccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc--------
Q 004789 544 SGADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-------- 609 (730)
Q Consensus 544 ~s~dg~I~vwd~~~~~~~~~~~i~-----~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~-------- 609 (730)
|+.|++|++||+.++.......+. ....+|. ..|.+++|+|||++||++ .||+|++||+.+++
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCC---CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence 999999999999886421111111 0112666 789999999999999994 89999999997652
Q ss_pred -------------------------------------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 610 -------------------------------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 610 -------------------------------------~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
++..+. .|...|++++||||| +||+|+.|++|+|||+.++
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 244443 478999999999999 9999999999999999988
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEe-----cCCC---CEEEEEeCCCcEEEEeC---CCCc
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAH-----PLEP---NRIALGLTNGRVHVIEP---LESE 706 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~s-----p~~~---~~las~s~Dg~I~iWd~---~~~~ 706 (730)
..+.......+ ..|| .+.|+ +++|+ | |+ .+|++|+.||+|++||+ .+|+
T Consensus 607 ~~~~~~~~~~~-~~gh-~~~V~--sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 607 AIIYMENIREI-SGAQ-SACVT--CIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEEEEEGGGT-CSSC-CCCEE--EEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred eEEEEeehhHh-cccc-ccceE--EEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 76643221111 0155 56688 99999 8 64 79999999999999999 5554
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-35 Score=313.80 Aligned_cols=293 Identities=16% Similarity=0.204 Sum_probs=243.2
Q ss_pred CCCCcEEEEEEecC-CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspd-g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
||.+.|++|+|+|+ +++||+||.|++|+|||+.+.+.. .+.....+ .+|...|.+++|+
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l--~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRAL--RGHSHFVSDVVISSD 97 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEE--CCCSSCEEEEEECTT
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEE--eCCCCCEEEEEECCC
Confidence 59999999999997 689999999999999998776531 11122211 2799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE-EEEcCCCCCeEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 532 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l 532 (730)
+++|++++ |+.|++|+............+...+....+++++ .|++|+.|+.+++||....... ....+|...+..+
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 89999999 9999999999999999999999999999999999 9999999999999998866443 3456799999999
Q ss_pred EEeCCC--CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 004789 533 AYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 609 (730)
Q Consensus 533 ~~spd~--~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~ 609 (730)
+|++++ ..+++++.|+.|++||+++++ .+. ...+|. +.|++++|+|++++|++ +.|+.|++||+++.+
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCc-----eee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 998865 578899999999999999853 233 456777 79999999999999999 589999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccc--cCCCCcccceeeEEEEEecCCCCE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
.+..+.. ...+.+++|+|++.++ +++.|+.|++||+.++..+..+..... ...+| ...|+ +++|+| ++++
T Consensus 249 ~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~l~~s~-dg~~ 320 (340)
T 4aow_A 249 HLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCT--SLAWSA-DGQT 320 (340)
T ss_dssp EEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEE--EEEECT-TSSE
T ss_pred eeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEE--EEEECC-CCCE
Confidence 9888753 6789999999988655 555799999999999988777653221 11234 55677 999999 8999
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 004789 688 IALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 688 las~s~Dg~I~iWd~~~~~ 706 (730)
|++|+.||.|+|||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999875
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.8e-37 Score=335.12 Aligned_cols=322 Identities=10% Similarity=0.038 Sum_probs=255.2
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
...++|||+++++++.||.|++||+...... . .+ .+| ..+....|+|+|++|++|+.||.|++||+.++..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~----~-~~--~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 131 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGS----K-ML--KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ- 131 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETT----T-TS--CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEeccccee----e-EE--ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-
Confidence 3689999999999999999999998642211 1 11 113 4555667899999999999999999999775543
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
.... .+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+.+|...|.+++|
T Consensus 132 --------------------~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 132 --------------------REID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp --------------------EEET--TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred --------------------eeec--ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 2211 1699999999999 88999999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcC---CCCCeEEE---------------------EEeCCCCEEEEEeCCC
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCL---------------------AYSLSLNVLVSSGADA 548 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l---------------------~~spd~~~l~s~s~dg 548 (730)
+|++ .|++|+.|+.|++||+++++.+..+.. |...|.++ +|+|++++|++|+.||
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 9999 999999999999999999999988875 34445554 4578999999999999
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCce-eeeecCCCCCCCeEE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITY 625 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~-~l~~-s~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~ 625 (730)
.|++||+++++. +.....+|. ..|.+++|+|+++ +|++ +.||.|++||+++++. +..+.. .|...+.+
T Consensus 270 ~i~i~d~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~ 340 (420)
T 3vl1_A 270 VITVHNVFSKEQ-----TIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-NEGTPINN 340 (420)
T ss_dssp CEEEEETTTCCE-----EEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-STTSCEEE
T ss_pred eEEEEECCCCce-----eEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceE
Confidence 999999998542 222445565 6899999999998 8888 4889999999998754 556654 35778888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEE---EEeecccccCCCCcccceeeEEEEEecCCCC---EEEEEeCCCcEEE
Q 004789 626 ATYSCDGKCIYVSCKSGHVKVFDTSTLELR---CQINLTAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHV 699 (730)
Q Consensus 626 ~~~spdg~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~---~las~s~Dg~I~i 699 (730)
+.+ +++++|++++.||.|++|++...... ....... ...+| .+.|. +++|+| ++. .+++++.+|.+.+
T Consensus 341 ~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~--~~~~s~-~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 341 VYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT-FLVSN-DDAVS--QFCYVS-DDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE-EECCS-SCCCC--EEEEEC-CSSSSCEEEEEETTTEEEE
T ss_pred EEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc-EEccC-CcceE--EEEEcc-CCCCcceEEEEcCCceEEE
Confidence 855 67899999999999999998874221 1111110 11133 45677 999999 777 7777778999999
Q ss_pred EeCCC
Q 004789 700 IEPLE 704 (730)
Q Consensus 700 Wd~~~ 704 (730)
|++.+
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99875
No 34
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-35 Score=338.92 Aligned_cols=343 Identities=11% Similarity=0.098 Sum_probs=278.3
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCC-cceeeeecCCCCCCCc-EEEEEEec--CCCEEEEEeCCCcEEEeecC
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGR-VVRLIYSH--SGDFLVALTQTATHKLWKWQ 411 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~-~~~~~~~l~~~gh~~~-V~~v~fsp--dg~~L~s~s~dg~I~iWd~~ 411 (730)
....++|||+++|+++ ++.|++|++...... .....+ .+|.+. |++++|+| +|++|++++.||.|++||+.
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF----TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE----CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEE----ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 3468999999999998 799999999742111 233333 259999 99999999 99999999999999999997
Q ss_pred CC--------ccccc--ccccc-----------------------ceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 412 SN--------KQSLE--EENVN-----------------------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 412 ~~--------~~~~~--~~~~~-----------------------~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
++ ..... ..... ..+.+|+ .+....... +|...|.+++|+ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--GHSQRINACHLKQSR 172 (615)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC--SCSSCEEEEEECSSS
T ss_pred CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee--cCCccEEEEEECCCC
Confidence 44 11111 00000 2345565 344444333 699999999999 5
Q ss_pred c-EEEEee-CCEEEEEEcCCceEEEEEcCCCC---CeEEEEEcCC-C-eEEEEECCCcEEEEecCCCceEEEE-c---CC
Q 004789 457 S-HLFSAS-GGKISIFSLETFQTLATFANPPP---IATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKL-K---GH 525 (730)
Q Consensus 457 ~-~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~---~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~~~~~~~-~---~h 525 (730)
+ .+++++ |+.|++||+.+++.+..+..|.. .|.+++|+|+ + .+++++.|+.|++||+.+++.+..+ . +|
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 5 799999 99999999999999999999999 9999999999 8 9999999999999999999999999 6 89
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeec--------------------------------------
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-------------------------------------- 567 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~-------------------------------------- 567 (730)
...|.+++|+ ++++|++++.|+.|++||+++++........
T Consensus 253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 9999999999 9999999999999999998864321100000
Q ss_pred --------------------------------------------------------------------------------
Q 004789 568 -------------------------------------------------------------------------------- 567 (730)
Q Consensus 568 -------------------------------------------------------------------------------- 567 (730)
T Consensus 332 ~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 411 (615)
T 1pgu_A 332 LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKV 411 (615)
T ss_dssp EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence
Q ss_pred ----------------------------------------------------------------------ccccCCCCCC
Q 004789 568 ----------------------------------------------------------------------SFQTGLVPET 577 (730)
Q Consensus 568 ----------------------------------------------------------------------~~~~~h~~~~ 577 (730)
....+|.
T Consensus 412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--- 488 (615)
T 1pgu_A 412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR--- 488 (615)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS---
T ss_pred EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc---
Confidence 0112233
Q ss_pred CCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec----------CCCEEEEEEcCCeEEE
Q 004789 578 TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----------DGKCIYVSCKSGHVKV 646 (730)
Q Consensus 578 ~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp----------dg~~l~sgs~dg~I~i 646 (730)
..|++++|+|++++|+++ .||.|++||+.+++.+..+.. .|...|++++|+| ++++|++|+.||.|++
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i 567 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence 678999999999999995 899999999999998877653 2689999999999 9999999999999999
Q ss_pred EECCCc-eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 647 FDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 647 wd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
||+.++ +.+..+. +| ...|. +++|+| ++. |++++.||.|++|++..
T Consensus 568 w~~~~~~~~~~~~~-------~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 568 YSVKRPMKIIKALN-------AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EESSCTTCCEEETT-------SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred EECCCCceechhhh-------cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 999998 6666654 66 55688 999999 788 99999999999999865
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9e-36 Score=317.20 Aligned_cols=277 Identities=15% Similarity=0.190 Sum_probs=224.0
Q ss_pred CC-CCCeeEeecCCCcEEEEeecCCCCCcc--eeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 341 LP-DADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 341 sp-dg~~lat~~~dg~i~lWd~~~~~~~~~--~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
++ |+++||+|+.|++|++||+........ .....+ .+|...|++++|+|++.+|++|+.|++|++||+.+++.
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~-- 110 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL--TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT-- 110 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE--CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE--
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh--ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--
Confidence 44 999999999999999999974322111 111122 35999999999999999999999999999999877654
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEc---CCCCCeEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYF 491 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~---~~~~~v~~i 491 (730)
+..+. +|...|.+++|+ +++|++++ |++|++||+.. ....... .|...|.++
T Consensus 111 -------------------~~~~~--~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 111 -------------------YKRFV--GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp -------------------EEEEE--CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred -------------------EEEEc--CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 11111 699999999999 88999999 99999999984 3333333 688899999
Q ss_pred EEcCCC-----------eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce
Q 004789 492 ILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 492 ~~spdg-----------~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
+|+|++ .+++|+.|+.|++|| ..++....+.+|...|++++|+|+|++|++|+.||.|++||+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~- 246 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT- 246 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS-
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc-
Confidence 999874 699999999999999 4567778889999999999999999999999999999999995422
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee--eecC---------CCCCCCeEEEEEe
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS--QLVP---------DKMDLPITYATYS 629 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~--~~~~---------~~h~~~v~~~~~s 629 (730)
.... .. .+. ..|.+++|+|++.+++++.|+.|++||+.+++... .+.. .+|...|.+++|+
T Consensus 247 ---~~~~-~~-~~~---~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 247 ---YPQR-EF-DAG---STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp ---SCSE-EE-ECS---SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred ---ccce-ee-cCC---CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 1112 11 122 46999999999999988899999999998776544 3321 1467889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCce
Q 004789 630 CDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 630 pdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
|+|++|++|+.||.|++|++.++.
T Consensus 319 p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCeEEEecCCceEEEEEEEccC
Confidence 999999999999999999987653
No 36
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-36 Score=375.45 Aligned_cols=342 Identities=13% Similarity=0.133 Sum_probs=285.3
Q ss_pred cCCCC--CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~sp--dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
..++| ++..+++|+.||+|++||+.. +.+... + .+|.+.|++++|+|+|++|++++.||.|++||+.++..
T Consensus 705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~~~~~-~--~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECRNT-M--FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEECSSSSCCEEEEEETTSCEEEEETTS----SSEEEE-E--CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEecCCCceEEEEEeCCCeEEEEECCC----cchhhe-e--cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 46777 566899999999999999963 233222 2 25999999999999999999999999999999987643
Q ss_pred ccc-c--------------------------------ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEE
Q 004789 416 SLE-E--------------------------------ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 460 (730)
Q Consensus 416 ~~~-~--------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~ 460 (730)
... . ........+|+..++........ +|...|.+++|+ +.+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEE
Confidence 221 0 01122457888888876654432 589999999999 88999
Q ss_pred Eee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecC------------------------
Q 004789 461 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------------ 514 (730)
Q Consensus 461 s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~------------------------ 514 (730)
+++ ||.|++||+.++..+..+.+|...|.+++|+|+| .+++++.|+.|++||+.
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence 999 9999999999999999999999999999999999 99999999998888743
Q ss_pred -------------------------------------------------------CCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 515 -------------------------------------------------------TKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 515 -------------------------------------------------------~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
+++....+.+|...|++++|+|+++
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS
T ss_pred EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC
Confidence 2334455667899999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC
Q 004789 540 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 619 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h 619 (730)
++++++.||.|++||+.+++.. . ..+|. ..|.+++|+|++..++.+.||.|++||+.+++.+..+.. |
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~ 1084 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYV-----F--LQAHQ---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--H 1084 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEE-----C--CBCCS---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--C
T ss_pred EEEEEcCCCEEEEEECCCCceE-----E--EecCC---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--c
Confidence 9999999999999999985432 2 33555 689999999988776668999999999999998888864 6
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEE
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 699 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~i 699 (730)
...|.+++|+|+|+++++++.||.|++||+.+++.+..+. +| .+.|. +++|+| ++++|++|+.||.|++
T Consensus 1085 ~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~~~~s~-dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1085 QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-------GH-NGCVR--CSAFSL-DGILLATGDDNGEIRI 1153 (1249)
T ss_dssp SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC-------CC-SSCEE--EEEECS-SSSEEEEEETTSCCCE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec-------cC-CCcEE--EEEECC-CCCEEEEEeCCCEEEE
Confidence 8899999999999999999999999999999988766655 55 55688 999999 8999999999999999
Q ss_pred EeCCCCceeee
Q 004789 700 IEPLESEVEWG 710 (730)
Q Consensus 700 Wd~~~~~~~w~ 710 (730)
||+.+++....
T Consensus 1154 wd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1154 WNVSDGQLLHS 1164 (1249)
T ss_dssp EESSSSCCCCC
T ss_pred EECCCCceEEE
Confidence 99998876544
No 37
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=354.90 Aligned_cols=346 Identities=11% Similarity=0.070 Sum_probs=255.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+++|||++||+|+.||+|+||+... .++.. . ..|...|++++|+| |++|++++.|++|++||+.+++...
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~-~---~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVI-K---LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTT----CEEEE-E---CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC----cEEEE-E---cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE
Confidence 58999999999999999999999853 22222 1 13789999999999 8899999999999999998876432
Q ss_pred c--------------------cccccceeeEecCCCCeeEee---------cccCCCCCCeeEEEEe---CcEEEEee-C
Q 004789 418 E--------------------EENVNMESQLYQPSSKLVMTN---------DIAADPKDSISCFALR---GSHLFSAS-G 464 (730)
Q Consensus 418 ~--------------------~~~~~~~~~i~~~~~~~~~~~---------~~~~~h~~~V~~l~~s---~~~l~s~s-d 464 (730)
. .......+++||..++.+... ....+|...|.+++|+ +..+++|+ |
T Consensus 94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 94 TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 1 012234568999988876421 1224699999999999 36788888 9
Q ss_pred CEEEEEEcCCceEEEEEcCC------------------CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE--Ec
Q 004789 465 GKISIFSLETFQTLATFANP------------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LK 523 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~------------------~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~--~~ 523 (730)
|.| +||+++++.+..+..| ...|++++|+|+| +|++|+.||.|++||+++++++.. +.
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 999 9999999999988766 4679999999999 999999999999999999987654 21
Q ss_pred ---C-------------CCCCeEEEEEe----CCC-CEEEEEeCC-----CcEEEEEc----------------------
Q 004789 524 ---G-------------HQNRITCLAYS----LSL-NVLVSSGAD-----AQLCVWDA---------------------- 555 (730)
Q Consensus 524 ---~-------------h~~~V~~l~~s----pd~-~~l~s~s~d-----g~I~vwd~---------------------- 555 (730)
. |...|++++|+ |++ ..+++|+.| +.+.+|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 1 34579999995 443 456666544 25556652
Q ss_pred -------------------------------------------------CCCceecce-eecc-----------------
Q 004789 556 -------------------------------------------------VGWKKLCSK-FLHS----------------- 568 (730)
Q Consensus 556 -------------------------------------------------~~~~~~~~~-~i~~----------------- 568 (730)
.++...... ....
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 221100000 0000
Q ss_pred -----------------cccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee--eeec-------CCCCCC
Q 004789 569 -----------------FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT--SQLV-------PDKMDL 621 (730)
Q Consensus 569 -----------------~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~--~~~~-------~~~h~~ 621 (730)
...+|. ..+.+++|+|++++|++ +.|++|++||+.++... ..+. ..+|..
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~---~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~ 489 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGV---RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKEL 489 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSB---CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSC
T ss_pred CHHHHHHHHhcccCCCCcccCCc---CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCC
Confidence 011222 23444566788999999 58999999999877421 1111 115688
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCceE---------------------------------------------EE
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL---------------------------------------------RC 656 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~---------------------------------------------~~ 656 (730)
.|.+++|+|||++||+|+.||+|+||++.+++. +.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 999999999999999999999999999987631 22
Q ss_pred EeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 657 QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 657 ~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
.+. +| .+.|+ +++|+| +| +||+|+.||+|+|||+.++...
T Consensus 570 ~l~-------~h-~~~V~--svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 570 AVH-------AN-KGKTS--AINNSN-IG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp EEC-------CC-SCSEE--EEEECB-TS-EEEEEETTSEEEEEETTTTEEE
T ss_pred EEE-------cC-CCcEE--EEEecC-Cc-EEEEEeCCCcEEEEECCCCeEE
Confidence 222 55 66788 999999 88 9999999999999999877543
No 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.1e-35 Score=308.45 Aligned_cols=281 Identities=17% Similarity=0.198 Sum_probs=232.9
Q ss_pred cCCCCC-CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 338 STSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spd-g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
.+++|+ +++||||+.|++|+|||+.............+ .+|.+.|.+++|+|+|++|++++.|+.|++|+.......
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l--~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~ 121 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL--RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT 121 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE--eCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee
Confidence 478998 68999999999999999975432222222233 359999999999999999999999999999998765431
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEE-EEEcCCCCCeEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFI 492 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~-~~~~~~~~~v~~i~ 492 (730)
.. .. .+...+..+.++ +.+|++++ |+.+++||+...... ....+|...+.+++
T Consensus 122 ~~---------------------~~--~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 122 RR---------------------FV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp EE---------------------EE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred ee---------------------ec--CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 10 01 366777888888 88999999 999999999765543 34567899999999
Q ss_pred EcCCC---eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccc
Q 004789 493 LLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 569 (730)
Q Consensus 493 ~spdg---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~ 569 (730)
|++++ .+++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.||.|++||+++.+. +. .
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~-~ 252 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LY-T 252 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EE-E
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----ee-e
Confidence 99887 788999999999999999999999999999999999999999999999999999999998543 33 2
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-------CCCCCCeEEEEEecCCCEEEEEEcCC
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-------DKMDLPITYATYSCDGKCIYVSCKSG 642 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~-------~~h~~~v~~~~~spdg~~l~sgs~dg 642 (730)
...+ ..|.+++|+|++.+++++.|+.|++||++++..+..+.. ..|...|++++|+|||++|++|+.||
T Consensus 253 ~~~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 253 LDGG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EECS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred ecCC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 2333 479999999999888888999999999998877766542 24688999999999999999999999
Q ss_pred eEEEEECCCce
Q 004789 643 HVKVFDTSTLE 653 (730)
Q Consensus 643 ~I~iwd~~~~~ 653 (730)
.|+|||+.+|+
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999885
No 39
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-34 Score=320.14 Aligned_cols=312 Identities=19% Similarity=0.213 Sum_probs=262.6
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
..+++|+++++|+.||+|++||+.. ......+ .+|.+.|++++|+ +++|++|+.||+|++||+.+++.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~---~~~~~~~----~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--- 191 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVT---GKCLRTL----VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC--- 191 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTT---CCEEEEC----CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE---
T ss_pred EEEEcCCEEEEEECCCcEEEEECCC---CcEEEEE----cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE---
Confidence 4677899999999999999999963 2222222 2599999999998 56899999999999999876653
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg 497 (730)
+.... +|...|.+++|+++.+++|+ ||.|++||+.+++.+..+.+|...|.+++| ++
T Consensus 192 ------------------~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 192 ------------------IHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp ------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred ------------------EEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 11111 69999999999988899999 999999999999999999999999999999 66
Q ss_pred -eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 498 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 498 -~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
.+++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++.||.|++||+++++. +. ...+|.
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~~-~~~~~~-- 319 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-----IH-TLTGHQ-- 319 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCC--
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE-----EE-EEcCCc--
Confidence 9999999999999999999999999999999999999 788999999999999999998542 33 345665
Q ss_pred CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004789 577 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 654 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~ 654 (730)
..+.++.++ +.++++ +.||.|++||+++++.+..+... .|...|.+++|+ +++|++|+.||.|++||+.+++.
T Consensus 320 -~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 320 -SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp -SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred -ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 577777764 668888 58999999999999998888643 368899999995 68999999999999999999998
Q ss_pred EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCc----EEEEeCCCC
Q 004789 655 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPLES 705 (730)
Q Consensus 655 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~----I~iWd~~~~ 705 (730)
+..+.... .+.+.+.|+ +++|+| ++.++|+|+.||+ |.|||+...
T Consensus 395 ~~~~~~~~---~~~~~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 395 IRNLVTLE---SGGSGGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECT---TGGGTCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeeccc---cCCCCceEE--EEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 87773210 022356688 999999 8999999999998 999999753
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=311.39 Aligned_cols=288 Identities=12% Similarity=0.119 Sum_probs=216.2
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|+ +||+|+.|++|++|++.... ..... .+...+|.+.|++++|+|+|++|++|+.|++|+||++.....
T Consensus 20 ~~~s~~--~las~~~D~~i~lw~~~~~~--~~~~~-~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~-- 92 (330)
T 2hes_X 20 FDFSQG--ILATGSTDRKIKLVSVKYDD--FTLID-VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-- 92 (330)
T ss_dssp EEEETT--EEEEEESSSCEEEEECSSSC--CEEEE-EECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred eccCCC--EEEEEcCCCEEEEEEecCCC--eEEEE-EEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC--
Confidence 356666 99999999999999996321 11211 121223999999999999999999999999999999864321
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC----ceEEEEEcCCCCCeEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATY 490 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t----~~~~~~~~~~~~~v~~ 490 (730)
..........+ .+|...|.+++|+ +++|++|+ |++|++||+.. .+++..+.+|...|.+
T Consensus 93 ------------~~~~~~~~~~~--~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 93 ------------RTFEMDLLAII--EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp --------------CCCEEEEEE--C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred ------------ccccceeEEEE--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 00011122222 2699999999999 89999999 99999999943 3577889999999999
Q ss_pred EEEcCCC-eEEEEECCCcEEEEecCCC--ceEEEEcCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCcee---c
Q 004789 491 FILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKL---C 562 (730)
Q Consensus 491 i~~spdg-~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~---~ 562 (730)
++|+|++ .|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +..|++|+.|++|++||+.++... .
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999999 9999999999999998876 678889999999999999998 678999999999999999763210 0
Q ss_pred ceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCCCCC-CeEEEEEec--CCCEEE
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDL-PITYATYSC--DGKCIY 636 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~--~~~~~~~~~h~~-~v~~~~~sp--dg~~l~ 636 (730)
......+...|. ..|.+++|++++ +|++ +.||.|++||..+++ ...... ..|.. .|.+++|+| ++++|+
T Consensus 239 ~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 239 WVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CTTTTSCEEEEEEC-----CCEE
T ss_pred eEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cccccceEEEEEEecCCCceEEE
Confidence 012221223366 789999999776 5555 699999999998774 232322 24565 899999999 789999
Q ss_pred EEEcCCeEEEEECCC
Q 004789 637 VSCKSGHVKVFDTST 651 (730)
Q Consensus 637 sgs~dg~I~iwd~~~ 651 (730)
+|+.||.|++|++.+
T Consensus 314 s~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 314 TGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTSEEEEEEC--
T ss_pred EecCCCcEEEEEecc
Confidence 999999999999865
No 41
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-35 Score=306.79 Aligned_cols=245 Identities=16% Similarity=0.222 Sum_probs=220.9
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
+|...|.+++|+ +++|++++ ||.|++||+.++..+..+..|...|.+++|+|++ .|++|+.|+.|++||+.+++.+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 699999999999 89999999 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec-CCcEEEE-Eec
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHE 597 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~-s~d 597 (730)
..+.+|...|++++|+|++.+|++|+.|++|++||++++. .+.....+|. ..|.+++|+| ++..|++ +.|
T Consensus 91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----~~~~~~~~h~---~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTFEGHE---HFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----EEEEEECCCC---SCEEEEEECTTCTTEEEEEETT
T ss_pred EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----chhhhhcccC---CcEEEEEECCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999998742 2222466787 7899999999 6788888 589
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEec--CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 598 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC--DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
+.|++||++++.....+.. +|...+..+.|+| ++.+|++|+.|+.|++||+.+++.+..+. || ...|.
T Consensus 163 ~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-------~h-~~~v~- 232 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-------GH-MSNVS- 232 (304)
T ss_dssp SEEEEEETTCSSCSEEEEC-CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-------CC-SSCEE-
T ss_pred CeEEEEECCCCCccceecc-CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-------CC-CCCEE-
Confidence 9999999988877666654 4578899999986 78899999999999999999999988887 66 55688
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 676 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
+++|+| ++.+|++|+.||+|++||+.+++..
T Consensus 233 -~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 233 -FAVFHP-TLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp -EEEECS-SSSEEEEEETTSCEEEEETTTCCEE
T ss_pred -EEEECC-CCCEEEEEcCCCeEEEEECCCCcee
Confidence 999999 8899999999999999999988754
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.2e-35 Score=341.62 Aligned_cols=293 Identities=15% Similarity=0.196 Sum_probs=239.4
Q ss_pred CCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
+|.+.|++++|+|++ ++|++||.|++|++|++...... .+....... +|...|.+++|+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLT--GHSHFVEDVVLSSD 441 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEE--CCSSCEEEEEECTT
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceec--CCCCcEEEEEECCC
Confidence 499999999999875 78999999999999998765320 111111111 799999999999
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE---cCCCCCeE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRIT 530 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~~V~ 530 (730)
+++|++|+ ||+|++||+.++.....+.+|...|.+++|+|++ .|++|+.|++|++||.......... .+|...|.
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 89999999 9999999999999999999999999999999999 9999999999999998755433332 46889999
Q ss_pred EEEEeCCC--CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 004789 531 CLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 607 (730)
Q Consensus 531 ~l~~spd~--~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~ 607 (730)
+++|+|++ ..+++++.|++|++||+++++ ... ...+|. +.|++++|+|++++|++ +.||.|++||+++
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 99999987 689999999999999998843 223 456777 79999999999999999 5899999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeeccccc---------CCCCcccceeeEEE
Q 004789 608 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELYPLVI 678 (730)
Q Consensus 608 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~---------~~gh~~~~v~~~~v 678 (730)
++.+..+. +...+.+++|+|++.+|++++ ++.|++||+.+++.+..+...... +..+....+++.++
T Consensus 593 ~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 593 GKKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp TEEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred CceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 99887764 367899999999999888775 667999999999988776532110 00111122334589
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 679 AAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 679 ~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+|+| ++++|++|+.||+|+||++.
T Consensus 669 ~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEcC-CCCEEEEEcCCCeEEEEecc
Confidence 9999 89999999999999999985
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.2e-34 Score=303.88 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=236.0
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
...++||++++++++ ||.|++|++...........+.. .+|...|.+++|+|++++|++++.||.|++||+.++...
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC--SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccc--cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc
Confidence 357899999999999 99999999975443333333332 248999999999999999999999999999998766420
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 493 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~ 493 (730)
..... ..|...|.+++|+ ++++++++ ||.|++||+.+++.+..+..|...|.+++|
T Consensus 133 -------------------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 191 (337)
T 1gxr_A 133 -------------------IKAEL--TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp -------------------EEEEE--ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred -------------------eeeec--ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence 01111 1588999999999 88999999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
+|++ .+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++||+.+++. . ....
T Consensus 192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~--~~~~ 263 (337)
T 1gxr_A 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----Y--QLHL 263 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----E--EECC
T ss_pred CCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----E--EEcC
Confidence 9999 99999999999999999998888775 788899999999999999999999999999998542 1 2345
Q ss_pred CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 573 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
|. ..|.+++|+|++++|++ +.||.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|++
T Consensus 264 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred Cc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 55 68999999999999998 48999999999998887554 35889999999999999999999999999996
No 44
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=307.30 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=246.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|+|++|++++.||.|++||+.+++. +..+. +|...|.+++|+ +
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------LGTLD--GHTGTIWSIDVDCFT 86 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------EEEEC--CCSSCEEEEEECTTS
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------hhhhh--hcCCcEEEEEEcCCC
Confidence 4999999999999999999999999999999876654 11111 699999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEecCCCc-----------e
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK-----------T 518 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~~-----------~ 518 (730)
++|++++ ||.|++||+.+++.+..+. +...|.+++|+|++ .+++++.+ +.|++||+..+. .
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 8999999 9999999999999999988 88899999999999 99999998 999999987653 3
Q ss_pred EEEEcCCCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-
Q 004789 519 KAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 595 (730)
Q Consensus 519 ~~~~~~h~~--~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s- 595 (730)
+..+..|.. .+.+++|+|++++|++++.||.|++||+++.. ..+. ....|. ..|.+++|+|++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEECTTSSEEEEEE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEECCCCCEEEEec
Confidence 445555666 89999999999999999999999999998731 2233 344555 689999999999999984
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEECCCceEEEEeecc
Q 004789 596 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 596 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg--------------~I~iwd~~~~~~~~~~~~~ 661 (730)
.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-- 312 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-- 312 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--
T ss_pred CCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--
Confidence 89999999999999988886 478899999999999999999988 89999999999888876
Q ss_pred cccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 662 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+| ...|. +++|+| ++++|++++.||.|++|++..+.
T Consensus 313 -----~~-~~~v~--~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 313 -----GH-FGPLN--TVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -----CC-SSCEE--EEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred -----cc-cCcEE--EEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 55 55688 999999 89999999999999999998764
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=325.20 Aligned_cols=321 Identities=10% Similarity=0.106 Sum_probs=248.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
..++|+++.+++++ .|+.. ......+ . .+|.+.|++++|+| +|++|++|+.||+|+|||+.+....
T Consensus 33 ~~f~~~~~~~~~~~------~w~~~----g~~~~~~-~--~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~ 99 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGNLR----GKLIATL-M--ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG 99 (437)
T ss_dssp GGGCCCCCCCCCCC------GGGCC----CCEEEEE-C--TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred hhcCCccccccccc------ccccc----ceEEeee-c--cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence 36799999998875 37754 2233333 1 24999999999999 9999999999999999998662110
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcC---CceEEEEEc--------
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFA-------- 482 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~---t~~~~~~~~-------- 482 (730)
.. + ..... . +|...|.+++|+ +++|++++ ||.|++||+. +++....+.
T Consensus 100 ~~----------~---~~~~~---~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 161 (437)
T 3gre_A 100 EV----------Y---SSSLT---Y--DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN 161 (437)
T ss_dssp CC----------C---SCSEE---E--ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cc----------c---ceeee---c--cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE
Confidence 00 0 00011 0 489999999999 88999999 9999999995 554444332
Q ss_pred --C--CCCCeEEEE--EcCCC-eEEEEECCCcEEEEecCCCceEEEEcC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 004789 483 --N--PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVW 553 (730)
Q Consensus 483 --~--~~~~v~~i~--~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~V~~l~~spd~~~l~s~s~dg~I~vw 553 (730)
. +...+.++. +++++ .+++|+.|+.|++||+++++.+..+.+ |...|++++|+|++++|++|+.||.|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 1 456677777 56888 999999999999999999999999988 89999999999999999999999999999
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEec----CCcEEEEE-ecCcEEEEeCCCCceeeeecCCC----------
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK---------- 618 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp----dg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~---------- 618 (730)
|+++++ .+..+..+|. ..|.+++|+| ++.+|+++ .||.|++||+++++.+..+..+.
T Consensus 242 d~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 242 DIRFNV-----LIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp ETTTTE-----EEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred EcCCcc-----EEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 999853 3332222444 5899996664 67788885 88999999999999887776431
Q ss_pred --------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccc---------------------
Q 004789 619 --------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--------------------- 663 (730)
Q Consensus 619 --------------h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--------------------- 663 (730)
|...|.+++|+ ++++|++|+.||.|++||+.+++....+..+..
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKM 392 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEEC
T ss_pred cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEec
Confidence 56679999999 789999999999999999999887766652100
Q ss_pred ---------cCCCCcccceeeEEEEEecC-CCCEEEEEeCCCcEEEEe
Q 004789 664 ---------AQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 664 ---------~~~gh~~~~v~~~~v~~sp~-~~~~las~s~Dg~I~iWd 701 (730)
...+| ...|+ +++|++. ++.+|++|+.||.|+||+
T Consensus 393 ~~~~~~~~~~~~~h-~~~I~--~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 393 KRTSTHSVDDSLYH-HDIIN--SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--------------CCCEE--EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccccCccccc-cccee--eEeeeccCCceEEEEEcCCceEEEeC
Confidence 00113 56688 8899883 267999999999999995
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-34 Score=314.59 Aligned_cols=281 Identities=14% Similarity=0.118 Sum_probs=228.9
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCC--------------CCCCCcEEEEEEecCCCEEEEEeCC
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--------------NSFGGRVVRLIYSHSGDFLVALTQT 402 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~--------------~gh~~~V~~v~fspdg~~L~s~s~d 402 (730)
...++|||++||+|+ ++++++|++... .....+.... ..+...|.+++|+|+|++|++|+.|
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVSDG---SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETTTC---CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEecCC---CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 358999999999986 689999998642 1222221100 0133459999999999999999999
Q ss_pred CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEE
Q 004789 403 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 479 (730)
Q Consensus 403 g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~ 479 (730)
+.|++||+.+++. .... .+|...|.+++|+ +++|++++ |++|++||+.++++..
T Consensus 145 ~~i~iwd~~~~~~---------------------~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 145 RLIRIWDIENRKI---------------------VMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp SCEEEEETTTTEE---------------------EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CeEEEEECCCCcE---------------------EEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 9999999876543 1111 1699999999999 88999999 9999999999999888
Q ss_pred EEcCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEecCCCceEEEE-------cCCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 004789 480 TFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGADAQL 550 (730)
Q Consensus 480 ~~~~~~~~v~~i~~sp-dg-~l~sgs~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~spd~~~l~s~s~dg~I 550 (730)
.+. +...+.+++|+| ++ +|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++|+.|+.|
T Consensus 202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 876 556799999999 77 9999999999999999999888776 5799999999999999999999999999
Q ss_pred EEEEcCCCceec-------ceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCC
Q 004789 551 CVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP 622 (730)
Q Consensus 551 ~vwd~~~~~~~~-------~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~ 622 (730)
++||+++..... ..... ...+|. ..|.+++|+|++++|++ +.|+.|++||+.+++.+..+. +|...
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--~h~~~ 354 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNS 354 (393)
T ss_dssp EEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC
T ss_pred EEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--CCCCC
Confidence 999998643211 11122 345677 78999999999999999 589999999999999988886 46899
Q ss_pred eEEEEEec------CCCEEEEEEcCCeEEEEECCC
Q 004789 623 ITYATYSC------DGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 623 v~~~~~sp------dg~~l~sgs~dg~I~iwd~~~ 651 (730)
|.+++|++ ++.+|++|+.||.|+||++..
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999986 689999999999999999754
No 47
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-34 Score=311.98 Aligned_cols=284 Identities=17% Similarity=0.230 Sum_probs=231.5
Q ss_pred CCCCcEEEEEEecCC-CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 379 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg-~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
+|.+.|++++|+|+| ++|++|+.||.|++||+.++... ......+|...|.+++|+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTTCBEEEEEEETT
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcCCceeEEEeCCC
Confidence 499999999999999 89999999999999998866541 111111599999999998
Q ss_pred -CcEEEEee-CCEEEEEEcCCceEEEEEcCC---CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCe
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 529 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~---~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 529 (730)
+++|++++ |+.|++||+.+ ..+..+..+ ...|.+++|+|++ .|++|+.|+.|++||+ +++.+..+.+|...|
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence 57899999 99999999986 555566544 4789999999999 9999999999999999 578888999999999
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCC
Q 004789 530 TCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAP 606 (730)
Q Consensus 530 ~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~iwd~~ 606 (730)
.+++|+|+++ ++++++.|+.|++||+++.+.. ...+. .. +|. ..|.+++|+| ++++|++ +.|+.|++||++
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~-~~-~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIA-EM-PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEE-EE-ECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEE-Ee-cCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 9999999998 9999999999999999873321 12223 12 455 7899999999 9999998 589999999999
Q ss_pred CCceeeeecCCC-----CC----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCC-cc
Q 004789 607 TLNHTSQLVPDK-----MD----------LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT-IS 670 (730)
Q Consensus 607 ~~~~~~~~~~~~-----h~----------~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh-~~ 670 (730)
+++....+..+. |. ..+..++|+|+|++ +|+.||.|++||+.+++.+..+. ++ +.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~-------~~~~~ 352 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR-------DPNAA 352 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC-------BTTBC
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec-------CCCCC
Confidence 888766665321 11 34445666777766 77789999999999999988886 33 24
Q ss_pred cceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
..+. .++|+| ++++|++|+ ||.|+||++.+
T Consensus 353 ~~~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIIS--LNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ceEE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence 5566 779999 899999997 99999999975
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.7e-35 Score=314.78 Aligned_cols=295 Identities=9% Similarity=0.052 Sum_probs=240.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-C-
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G- 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~- 456 (730)
+|.+.|++++|+| ++|++|+.||.|++|++.+...... ........ +|...|.+++|+ .
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~--~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP---------------KDKSYSHF--VHKSGLHHVDVLQAI 74 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG---------------GGGEEEEE--CCTTCEEEEEEEEEE
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC---------------CCcceEEe--cCCCcEEEEEEeccc
Confidence 5999999999999 7899999999999999987652000 00111111 699999999999 6
Q ss_pred -------cEEEEee-CCEEEEEEcCCceE-----EEEEcCC-----CCCeEEEEEc----CCC-e-EEEEECCCcEEEEe
Q 004789 457 -------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSILVHC 512 (730)
Q Consensus 457 -------~~l~s~s-dg~I~vwd~~t~~~-----~~~~~~~-----~~~v~~i~~s----pdg-~-l~sgs~dg~I~iwd 512 (730)
++|++++ ||.|++||+.+++. ...+..| ...|.+++|+ |++ . |++|+.||.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 6899999 99999999998887 8888888 5899999999 999 8 99999999999999
Q ss_pred cCC------CceEE-----EE-------cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC--
Q 004789 513 PCT------KKTKA-----KL-------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-- 572 (730)
Q Consensus 513 ~~~------~~~~~-----~~-------~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~-- 572 (730)
+.+ ++.+. .+ ..|...|.+++|+|++ ++++++.||.|++||+++++. +. ....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~-~~~~~~ 227 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-----LY-NFESQH 227 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-----EE-EEECCC
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce-----eE-EEeccc
Confidence 998 66665 66 4488999999999999 999999999999999998542 23 2333
Q ss_pred -C---CCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCC-----------CCCCeEEEEEecCCC
Q 004789 573 -L---VPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGK 633 (730)
Q Consensus 573 -h---~~~~~~v~~l~~spdg~~l~~-s~d---g~I~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~spdg~ 633 (730)
| . ..|.+++|+|++++|++ +.| +.|++||+++++.+..+.... |...|.+++|+|+++
T Consensus 228 ~h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 304 (397)
T 1sq9_A 228 SMINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 304 (397)
T ss_dssp ---CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred cccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence 5 4 68999999999999999 478 899999999999888886411 689999999999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEeecccccCCCC--------------cccceeeEEEEEecCCC----------CEEE
Q 004789 634 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------NRIA 689 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh--------------~~~~v~~~~v~~sp~~~----------~~la 689 (730)
+|++++.||.|++||+.+++.+..+...... .+| |...|+ +++|+| ++ ++|+
T Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~--~~~~~~-~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPGVF--DVKFLK-KGWRSGMGADLNESLC 380 (397)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCCEE--EEEEEC-TTTSBSTTCTTSCEEE
T ss_pred EEEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCcee--EEEecc-ccccccccccccceEE
Confidence 9999999999999999999988887621100 011 155677 999999 66 7999
Q ss_pred EEeCCCcEEEEeCCCCc
Q 004789 690 LGLTNGRVHVIEPLESE 706 (730)
Q Consensus 690 s~s~Dg~I~iWd~~~~~ 706 (730)
+++.||.|++|++.+++
T Consensus 381 s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEETTTEEEEEEEEC--
T ss_pred EecCCCcEEEEEcCCCC
Confidence 99999999999998763
No 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-34 Score=359.87 Aligned_cols=321 Identities=12% Similarity=0.140 Sum_probs=268.5
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||+++|+|+.||+|++||+.. ......+. +|.+.|.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~---~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-- 691 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAET---GEKLLDIK----AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-- 691 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT---CCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCC---CCEEEEec----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--
Confidence 58999999999999999999999963 22333332 5999999999999999999999999999999877654
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 492 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~ 492 (730)
+.... +|...|.+++|+ +.++++|+ ||.|++||+.+++++..+.+|...|++++
T Consensus 692 -------------------~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 692 -------------------VHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred -------------------EEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence 11111 699999999998 34788888 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEecCCCceEEEE-------------------------------------------------
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKL------------------------------------------------- 522 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~------------------------------------------------- 522 (730)
|+|++ .+++|+.||.|++||+.+++....+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 99999 9999999999999998876544332
Q ss_pred ------cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E
Q 004789 523 ------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 595 (730)
Q Consensus 523 ------~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s 595 (730)
.+|...|.+++|+|+++++++++.||.|++||+.++. .+. ...+|. +.|.+++|+|+|+++++ +
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVA-DCRGHL---SWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eee-ecCCCc---cceEEEEECCCCCEEEEEe
Confidence 1677889999999999999999999999999999853 333 456777 79999999999999999 5
Q ss_pred ecCcEEEEeCCCCce-----------------------------eeeecC------CCCCCCeEEEEEecCCCEEEEEEc
Q 004789 596 HEGQIDVYEAPTLNH-----------------------------TSQLVP------DKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 596 ~dg~I~iwd~~~~~~-----------------------------~~~~~~------~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
.||.|++||+.+... +..+.. ..+...+.+++|+|+|+++++|+.
T Consensus 902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence 899999999753210 000000 012567999999999999999999
Q ss_pred CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 641 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 641 dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
||.|++|++.+++....+. +| ...|. +++|+| ++++|++++.||.|++|++.+++..
T Consensus 982 ~g~i~i~d~~~~~~~~~~~-------~h-~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSGV-------GH-KKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp TSCCEEEETTTTSCEEECC-------CC-SSCCC--CEEECS-SSSCEEEECSSSBEEEEETTTTEEE
T ss_pred CCCEEEEEcCCCceeeecc-------cC-CCceE--EEEECC-CCCEEEEEcCCCEEEEEECCCCceE
Confidence 9999999999998877765 55 55688 999999 8999999999999999999988654
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=336.90 Aligned_cols=326 Identities=10% Similarity=0.002 Sum_probs=225.7
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC------CCEEEEEeCCCcEEEeecCCC
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN 413 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd------g~~L~s~s~dg~I~iWd~~~~ 413 (730)
.+|+++.+|+++.|++|+||++........ ....+. +|.+.|++++|+|+ +.+||+++.||+|+|||+..+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~--~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIV--HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE-EEEEEE--ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEE--ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 479999999999999999999974221111 011121 37899999999997 579999999999999999766
Q ss_pred ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCce-EEEEEcCCCCCeEE
Q 004789 414 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY 490 (730)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~-~~~~~~~~~~~v~~ 490 (730)
..... ......... . ...+|...|.+++|+ +..|++|+ ||+|++||++++. ....+.+|...|.+
T Consensus 246 ~~~~~--------~~~~~~~p~--~--~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 246 ATDVH--------VFKMCEKPS--L--TLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS 313 (524)
T ss_dssp SSSSS--------EEECCCSCS--E--EECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred ccccc--------cceeecCce--E--EEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence 43100 000010000 0 012689999999999 77999999 9999999999764 45568899999999
Q ss_pred E--EEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecce
Q 004789 491 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 491 i--~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~ 564 (730)
+ +|+|+| +|++|+.|++|++||+++++++..+.+|.. .|.+++|+|++..+++++.|++|++||++++.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~----- 388 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF----- 388 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----
Confidence 9 578886 789999999999999999887777777653 58899999999999999999999999999853
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC---CCCCCeEEEEEecCCCEEEEEEc
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~---~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
.+. ...+|. +.|++++|+|+|++|++ +.|++|++||+..+ .+...... .+...+++++|+|+|..+ ....
T Consensus 389 ~~~-~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~ 462 (524)
T 2j04_B 389 AVH-PLVSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS 462 (524)
T ss_dssp CCE-EEEECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECC
T ss_pred cce-eeecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccC
Confidence 222 344677 79999999999999998 58999999998643 32222110 112257899999999855 2222
Q ss_pred CCeEEEEECC-CceEEEEeecccccCCCCcccceeeEEEEEecCCC---CEEEEEeCCCcEEEEeCCC
Q 004789 641 SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 641 dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~---~~las~s~Dg~I~iWd~~~ 704 (730)
.+.+|+.. ++..+..+. || ...|+ +|+|+| ++ ..+|+|+.||.|+||++.-
T Consensus 463 --~~~~~~~~~~g~~~~~l~-------gh-~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 --SYEVYPLTVNDVSKAKID-------AH-GINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --CCCCCC--------------------C-CCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred --CceecccccCCcceeeec-------CC-CceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 23344432 344455554 65 56788 999999 64 4999999999999999863
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.1e-34 Score=299.74 Aligned_cols=275 Identities=12% Similarity=0.120 Sum_probs=230.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||+++++++.||+|++|+... +.+... + .+|...|.+++|+|+|++|++++.|+.|++||+.+++.
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~-~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-- 99 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYD----GKFEKT-I--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-- 99 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCC----cccchh-h--ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--
Confidence 57899999999999999999999863 222221 2 25999999999999999999999999999999876654
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 494 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s 494 (730)
+.... +|...|.+++|+ +++|++|+ |+.|++||+.+++.+..+..|...|.+++|+
T Consensus 100 -------------------~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 100 -------------------LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred -------------------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 11111 689999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCceEEEEc-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccC
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
|++ .+++|+.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||+++++. +. ...+
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~-~~~~ 232 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-----LK-TYTG 232 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----EE-EECS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----EE-EEEe
Confidence 999 99999999999999999998887764 4667899999999999999999999999999998543 22 2334
Q ss_pred CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEEC
Q 004789 573 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDT 649 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs--~dg~I~iwd~ 649 (730)
|......+......+++.++++ +.||.|++||+.+++.+..+. +|...|.+++|+|++.++++++ .|+.|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 4310012333333467888888 589999999999999988886 4689999999999999999987 6999999986
Q ss_pred C
Q 004789 650 S 650 (730)
Q Consensus 650 ~ 650 (730)
+
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.2e-35 Score=323.62 Aligned_cols=289 Identities=16% Similarity=0.211 Sum_probs=226.7
Q ss_pred CCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 380 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 380 h~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
|...|++++|+| ++++||+|+.||.|+|||+.++... ... ...+|...|.+++|+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------~~~--~~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------TFI--KGIGAGGSITGLKFNPLN 176 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------EEE--CCCSSSCCCCEEEECSSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------eEE--EccCCCCCEEEEEEeCCC
Confidence 899999999999 5678999999999999998765431 011 111699999999998
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCC--CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~--~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
+++|++|+ ||+|++||++++........+ ...+.+++|+|++ +|++|+.||.|++||++ ++.+..+.+|...|++
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 78999999 999999999876554444433 3467899999999 99999999999999986 4566788899999999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 004789 532 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 609 (730)
Q Consensus 532 l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~ 609 (730)
++|+|++. ++++|+.|+.|++||+++.+... .+. ...+|. ..|++++|+|+|++|++ +.||.|++||+.++.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccc--eEE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 99999875 78899999999999998854321 112 235676 78999999999999999 589999999999988
Q ss_pred eeeeecCCCC----CCCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 610 HTSQLVPDKM----DLPITYATYSCDGKCIYVSCK------------SGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 610 ~~~~~~~~~h----~~~v~~~~~spdg~~l~sgs~------------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
....+..+.+ ...+..+.|+|++.++++++. ++.|++||..+++.+..+. ++|...|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------~~~~~~v 402 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------DPESSGI 402 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------CSSCCCC
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------CCCCCcE
Confidence 7766654321 123445677787777776642 3579999999999887765 3335557
Q ss_pred eeEEE-EEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 674 YPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 674 ~~~~v-~~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
. ++ +|+| ++.+||+|+ |++|+||++.+++.
T Consensus 403 ~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 S--SLNEFNP-MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp C--CEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred E--EEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence 6 55 6999 899999886 78999999998865
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-34 Score=306.53 Aligned_cols=290 Identities=14% Similarity=0.168 Sum_probs=236.6
Q ss_pred CCCCcEEEEEEecC----CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 379 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 379 gh~~~V~~v~fspd----g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
+|.+.|++++|+|+ ...+++++.++.|++|++.++..... +.......|...|.+++|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------------LQSYVDADADENFYTCAW 77 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------------EEEEECSCTTCCEEEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------------eeeccccCCCCcEEEEEe
Confidence 59999999999984 45677777788999999886654111 111111147889999999
Q ss_pred e-C-----cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEecCCCceEEEE---
Q 004789 455 R-G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL--- 522 (730)
Q Consensus 455 s-~-----~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp-dg-~l~sgs~dg~I~iwd~~~~~~~~~~--- 522 (730)
+ . .+|++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++|+.||.|++||+++++.+..+
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9 3 4799998 99999999999999999999999999999999 77 9999999999999999999999888
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee----------------------cccccCCCCCCCCe
Q 004789 523 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL----------------------HSFQTGLVPETTIV 580 (730)
Q Consensus 523 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i----------------------~~~~~~h~~~~~~v 580 (730)
.+|...|.+++|+|++++|++++.||.|++||+++++....... .....+|. ..|
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v 234 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYV 234 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCC
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceE
Confidence 67999999999999999999999999999999998543211000 00122355 789
Q ss_pred EEEEEecCCcEEEEE-ecCcEEEEeCCCCce--------------eeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCe
Q 004789 581 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGH 643 (730)
Q Consensus 581 ~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~--------------~~~~~~~~h~~~v~~~~~spd--g~~l~sgs~dg~ 643 (730)
.+++|+ +++++++ .|+.|++||+.++.. +..+. .|...|.+++|+|+ +++|++|+.||.
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 999999 6788885 899999999987644 44454 35788999999999 999999999999
Q ss_pred EEEEECCCceEE----EEeecccccCCCCc-ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 644 VKVFDTSTLELR----CQINLTAYAQPGTI-SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 644 I~iwd~~~~~~~----~~~~~~~~~~~gh~-~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
|++||+.+++.. ..+. +|. ...|. +++|+| ++++|++++.||.|++||+.
T Consensus 311 i~vwd~~~~~~~~~~~~~~~-------~~~~~~~v~--~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLT-------HHKCGAAIR--QTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCSSSGGGCEEEEEC-------CTTCCSCEE--EEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCCCCCccccceEEc-------ccccCCceE--EEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 999999987532 3443 331 45677 999999 89999999999999999985
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.1e-34 Score=307.54 Aligned_cols=297 Identities=10% Similarity=0.096 Sum_probs=239.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|.++|++++|+|+|++|++++.|+.|++||+.+++.. ....+. +|...|.+++|+ ++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~~~~~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------QVHELK--EHNGQVTGVDWAPDSN 65 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-------------------EEEEEE--CCSSCEEEEEEETTTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------eeeeec--CCCCcccEEEEeCCCC
Confidence 8999999999999999999999999999998766410 111111 699999999999 88
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEE--cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCce---EEEE-cCCCCCe
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKL-KGHQNRI 529 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~--~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~---~~~~-~~h~~~V 529 (730)
+|++++ ||.|++||+.+++....+ ..|...|.+++|+|++ .|++|+.|+.|++||+..+.. ...+ .+|...|
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 999999 999999999998765544 5788999999999999 999999999999999998762 3333 5689999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCce-------------ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 595 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~-------------~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s 595 (730)
.+++|+|+++++++++.||.|++||++.... .....+. ...+|. ..|.+++|+|++++|++ +
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecCCCC---CeEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999999752110 0112333 344666 68999999999999999 5
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--ceEEE--Eeec-----------
Q 004789 596 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRC--QINL----------- 660 (730)
Q Consensus 596 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~--~~~~~--~~~~----------- 660 (730)
.|+.|++||+++++.+..+.. |...|.+++|+|++.+|++| .|+.|++|++.+ ++... .+..
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 899999999999999888864 57899999999999988888 899999999988 53211 1100
Q ss_pred -----------c--------cccCCCCcccceeeEEEEEecCCC---CEEEEEeCCCcEEEEeCCCCce
Q 004789 661 -----------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 661 -----------~--------~~~~~gh~~~~v~~~~v~~sp~~~---~~las~s~Dg~I~iWd~~~~~~ 707 (730)
. .....|| ...|+ +++|++.++ .+|+||+.||.|++|++.+++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLH-KNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSS-SSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhhhcccccccccCccccccccccc-cCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 1111266 55688 999886477 9999999999999999987654
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-33 Score=312.49 Aligned_cols=305 Identities=13% Similarity=0.162 Sum_probs=250.4
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
...++++++++|+.||+|++||+.. ......+ .+|.+.|++++|+|++ +|++|+.||+|++||+.+++.
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~---~~~~~~~----~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~--- 195 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQL----SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC--- 195 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTT---TEEEEEE----CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE---
T ss_pred EEEECCCEEEEEcCCCcEEEEECCC---CcEEEEE----eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE---
Confidence 3456789999999999999999863 2222222 2599999999999998 899999999999999876653
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCce-----------------
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ----------------- 476 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~----------------- 476 (730)
..... +|...|.+++|+ +.++++|+ ||.|++||+.++.
T Consensus 196 ------------------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 196 ------------------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp ------------------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred ------------------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 11111 699999999998 57899999 9999999998765
Q ss_pred ------EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCc
Q 004789 477 ------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 549 (730)
Q Consensus 477 ------~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~ 549 (730)
....+.+|...|.++ ++++ .+++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 333 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 255677888888887 5667 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 004789 550 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 628 (730)
Q Consensus 550 I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 628 (730)
|++||+++++ .+. ...+|. ..|.+++|+ +.++++ +.||.|++||+.++....... +...+..++|
T Consensus 334 i~vwd~~~~~-----~~~-~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~ 399 (464)
T 3v7d_B 334 IRIWDLENGE-----LMY-TLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTF 399 (464)
T ss_dssp EEEEETTTTE-----EEE-EECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEE
T ss_pred EEEEECCCCc-----EEE-EEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEE
Confidence 9999999854 333 345676 789999997 578887 589999999999887765553 4677888999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 629 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 629 spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
++++++|++|+ ||.|++||+.+++.+..... +| ...|+ +++|++ ..++++++.||.+.+|-+
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~~-~~~v~--~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGKLVHANIL------KD-ADQIW--SVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCCEEESCTT------TT-CSEEE--EEEEET--TEEEEEEEETTEEEEEEE
T ss_pred EeCCCEEEEec-CCeEEEEECCCCcEEehhhc------cC-CCcEE--EEEecC--CEEEEEEEeCCeEEEEEe
Confidence 99999999998 99999999999998765331 33 56678 899974 456777777877665543
No 56
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.4e-34 Score=305.09 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=221.8
Q ss_pred CCcEEEEEEecCCCEEEEEeCCC-------cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 453 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg-------~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~ 453 (730)
.-+|++++|+|||++|++||.+. .|++|++.......... + .........+|...|.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-------~------~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-------F------HILSEFALEDNDDSPTAID 80 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-------E------EEEEEEECCTTSCCCCEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-------e------eeeeEEEccCCCCceEEEE
Confidence 46899999999999999998653 59999987654321100 0 0001111225888999999
Q ss_pred EeCcEEEEe-----------e-CCEEEEEEcCCceE----EEEEc-----CCCCCeEEEEEcCCC-eEEEE--ECCCcEE
Q 004789 454 LRGSHLFSA-----------S-GGKISIFSLETFQT----LATFA-----NPPPIATYFILLPQD-LFAFG--FDDSSIL 509 (730)
Q Consensus 454 ~s~~~l~s~-----------s-dg~I~vwd~~t~~~----~~~~~-----~~~~~v~~i~~spdg-~l~sg--s~dg~I~ 509 (730)
++++.+++| + |+.+++|++.+... ..... .+...+.+++|+||| +++++ +.|++|+
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 987776664 3 67899999866432 12221 334568899999999 76544 4789999
Q ss_pred EEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC
Q 004789 510 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 510 iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg 589 (730)
+||+.+++.+..+. |...|.+++|+|||+++++++. +.+++|+..++... ......+|. ..|.+++|+|++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~----~~~~~~~~~---~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCI----ARKTDFDKN---WSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEE----EEECCCCTT---EEEEEEEEEETT
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcce----eeeecCCCC---CCEEEEEEcCCC
Confidence 99999999998886 7788999999999999999985 45667777664322 121344565 689999999999
Q ss_pred cEEEE-EecC----cEEEEeCCCCcee--eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeeccc
Q 004789 590 IHLLS-IHEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 662 (730)
Q Consensus 590 ~~l~~-s~dg----~I~iwd~~~~~~~--~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 662 (730)
+++++ +.|+ .+++||+...... .......|...|++++|+|||++||+|+.|+.|+|||+.+++++..+..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-- 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-- 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence 99998 4565 5888998765432 1222235688999999999999999999999999999999998877531
Q ss_pred ccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 663 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 663 ~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
|| ...|+ +++|+| |+++|||||.|++|+||++...
T Consensus 310 ----gH-~~~V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 ----AH-SFAIT--EVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ----SS-SSCEE--EEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ----cc-cCCEE--EEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 66 66788 999999 8999999999999999999644
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-34 Score=310.51 Aligned_cols=291 Identities=11% Similarity=0.132 Sum_probs=240.9
Q ss_pred CCCCcEEEEEEecCCC-EEEEEeCCCcEEEeec----CCCccccccccccceeeEecCCCCeeEeecc-----cCCCCCC
Q 004789 379 SFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW----QSNKQSLEEENVNMESQLYQPSSKLVMTNDI-----AADPKDS 448 (730)
Q Consensus 379 gh~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~h~~~ 448 (730)
.|.+.|++++|+|+|+ +||+|+.||.|++|++ .++.. +|+......+...+ ..+|...
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK------------YWKLTIIAELRHPFALSASSGKTTNQ 110 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------------------CEEEEEEEEEECCCCCC------CBC
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc------------cccccccccccccccccccccCCCCc
Confidence 3789999999999999 9999999999999999 66652 11111000111000 0137889
Q ss_pred eeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC
Q 004789 449 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 524 (730)
Q Consensus 449 V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 524 (730)
|.+++|+ +++|++++ ||.|++|| .+++.+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+..
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 9999999 88999999 99999999 7788999999999999999999999 999999999999999999999999988
Q ss_pred CCCC---------------eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC
Q 004789 525 HQNR---------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 525 h~~~---------------V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg 589 (730)
+... +.+++|+|++ .+++++.||.|++||+.+++ .+. ...+|. ..|.+++|+|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-----~~~-~~~~~~---~~i~~~~~~~~~ 259 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-----PTG-KLIGHH---GPISVLEFNDTN 259 (425)
T ss_dssp C---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-----CSE-EECCCS---SCEEEEEEETTT
T ss_pred cccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-----eee-eeccCC---CceEEEEECCCC
Confidence 7776 9999999975 58889999999999999853 222 344566 689999999999
Q ss_pred cEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCC
Q 004789 590 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 668 (730)
Q Consensus 590 ~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh 668 (730)
++|+++ .|+.|++||+++++.+..+. .|...|.+++|+|++ ++++++.||.|++||+.+++.+..+. +|
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~ 329 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-------VD 329 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSEEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-------CT
T ss_pred CEEEEEcCCCEEEEEECCCCccceEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-------cC
Confidence 999985 79999999999998888875 368899999999999 99999999999999999999888776 44
Q ss_pred cccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 669 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 669 ~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
...|. +++|+| ++++|++++.||.|++|++.+++
T Consensus 330 -~~~i~--~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 330 -GVPIF--AGRISQ-DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp -TCCEE--EEEECT-TSSEEEEEETTSCEEEEECHHHH
T ss_pred -CccEE--EEEEcC-CCCEEEEEECCCeEEEEECCCCc
Confidence 45677 999999 89999999999999999998776
No 58
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.1e-34 Score=331.52 Aligned_cols=278 Identities=18% Similarity=0.221 Sum_probs=228.9
Q ss_pred cCCCCC-CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 338 STSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spd-g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
..++|+ +++|+||+.|++|++|++.............+ .+|...|.+++|+|+|++|++|+.||+|+|||+.++..
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~- 464 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL--TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS- 464 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee--cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc-
Confidence 367776 57999999999999999974322211111122 25999999999999999999999999999999876653
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEE---cCCCCCeEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF---ANPPPIATY 490 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~---~~~~~~v~~ 490 (730)
...+. +|...|.+++|+ +++|++|+ |++|++||.......... .+|...|.+
T Consensus 465 --------------------~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 465 --------------------TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp --------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred --------------------eeEEe--CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 11111 699999999999 88999999 999999998755443332 368889999
Q ss_pred EEEcCCC---eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 491 FILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 491 i~~spdg---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
++|+|++ .+++|+.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.||.|++||+++++. +.
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-----~~ 597 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-----LY 597 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE-----EE
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-----EE
Confidence 9999987 799999999999999999999999999999999999999999999999999999999998643 23
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC-----------------CCCCeEEEEEec
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-----------------MDLPITYATYSC 630 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~-----------------h~~~v~~~~~sp 630 (730)
....+ ..|.+++|+|++.+++++.++.|++||+++++.+..+.... +...+++++|+|
T Consensus 598 -~~~~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 598 -SLEAN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp -CCBCS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred -EecCC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 12222 57999999999999999888999999999998887664321 112478999999
Q ss_pred CCCEEEEEEcCCeEEEEECC
Q 004789 631 DGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 631 dg~~l~sgs~dg~I~iwd~~ 650 (730)
+|++|++|+.||.|+||++.
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999985
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=307.47 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=231.5
Q ss_pred CCCCcEEEEEEecCCCEEE-EEeC---CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 379 SFGGRVVRLIYSHSGDFLV-ALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~-s~s~---dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
+|.+.|.+++|+|++..++ +|+. ||.|++||+.+++... .. .. +|...|.+++|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-------------------~~-~~--~~~~~v~~~~~ 73 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-------------------LR-EI--EKAKPIKCGTF 73 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-------------------EE-EE--EESSCEEEEEC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-------------------ee-ee--cccCcEEEEEE
Confidence 4999999999999997655 5554 8999999987765410 00 01 48899999999
Q ss_pred e-C----cEEEEee-CCEEEEEEcCCce-EEEEEcCCCCCeEEEEE------cCCC-eEEEEECCCcEEEEecCCCc-eE
Q 004789 455 R-G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTKK-TK 519 (730)
Q Consensus 455 s-~----~~l~s~s-dg~I~vwd~~t~~-~~~~~~~~~~~v~~i~~------spdg-~l~sgs~dg~I~iwd~~~~~-~~ 519 (730)
+ . ++|++++ ||.|++||+.+++ .+..+.+|...|.++.| +|++ .|++|+.|+.|++||+.+++ .+
T Consensus 74 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred cCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence 9 4 8899999 9999999999988 88899999999999955 6788 99999999999999999886 77
Q ss_pred EEEcCCCC----CeEEEE----EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec---C
Q 004789 520 AKLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---D 588 (730)
Q Consensus 520 ~~~~~h~~----~V~~l~----~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp---d 588 (730)
..+..|.+ .|.+++ |+|+++++++++.||.|++||+++++. .. ...|. ..|.+++|+| +
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~--~~~~~---~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RW--ETNIK---NGVCSLEFDRKDIS 223 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EE--EEECS---SCEEEEEESCSSSS
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----ee--ecCCC---CceEEEEcCCCCCC
Confidence 88866554 899998 678999999999999999999998543 11 23344 6899999999 8
Q ss_pred CcEEEEE-ecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCce----------
Q 004789 589 QIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLE---------- 653 (730)
Q Consensus 589 g~~l~~s-~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~~~~~---------- 653 (730)
+.+++++ .||.|++||+++++.+..+. ...|...|.+++|+|+++ +|++|+.||.|++||+.++.
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~ 303 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence 9999984 89999999998776655443 124689999999999998 89999999999999998653
Q ss_pred ---------EEEEeecccccCCCCcccceeeEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCc
Q 004789 654 ---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE 706 (730)
Q Consensus 654 ---------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la-s~s~Dg~I~iWd~~~~~ 706 (730)
.+..+. +| ...|. +++|+| ++++|+ +++.||.|++|++.+.+
T Consensus 304 ~~~~~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 304 EMGVAGSVSLLQNVT-------LS-TQPIS--SLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCEEEEEEEEE-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccccceeeccc-------cC-CCCee--EEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 333333 55 55688 999999 788887 89999999999998754
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.3e-34 Score=311.59 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=232.9
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
..+++++|+|+|++|++++.||.|++||+.+...... + ..| ..+....|+ +++|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------------------~-~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------------------L-KRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------------------S-CSC-CEEEEEEECSSSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------------------E-ecC-CceEEEEEecCCCEE
Confidence 4455799999999999999999999999876654111 0 023 333344556 8899
Q ss_pred EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC
Q 004789 460 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 537 (730)
++++ ||.|++||+.+++....+.+|...|++++|+|++ .|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999 9999999999999999889999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCC------------------CCCCeEEEEEecCCcEEEEE-ecC
Q 004789 538 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP------------------ETTIVNHIQFHPDQIHLLSI-HEG 598 (730)
Q Consensus 538 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~------------------~~~~v~~l~~spdg~~l~~s-~dg 598 (730)
+++|++++.|+.|++||+++++....... ...+.. ....+.+++|+|++++|+++ .||
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNR---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECB---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeec---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 99999999999999999998654322111 111210 00344455567899999985 899
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCceE-EEEeecccccCCCCcccceeeE
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL 676 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~ 676 (730)
.|++||+++++.+..+.. .|...|.+++|+|++. +|++|+.||.|++||+.+++. +..+. +|+...|.
T Consensus 270 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~v~-- 339 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-------INEGTPIN-- 339 (420)
T ss_dssp CEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-------ESTTSCEE--
T ss_pred eEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-------ccCCCCce--
Confidence 999999999988877754 4688999999999999 999999999999999998753 55555 55566677
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 677 VIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 677 ~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
++.| | ++++|++++.||.|++|++..+
T Consensus 340 ~~~~-~-~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 340 NVYF-A-AGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEE-E-TTEEEEEETTTEEEEEEEECCT
T ss_pred EEEe-C-CCCEEEEecCCccEEEEeccCC
Confidence 6655 4 4789999999999999999874
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=306.82 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=234.2
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|.+.+....+++++..+++++.|+.|++|++.++... .... ..|...|.+++|+ ++
T Consensus 90 ~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~---------------------~~~~-~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 90 IIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS---------------------ALAE-TDESTYVASVKWSHDGS 147 (401)
T ss_dssp CCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE---------------------EEEE-CCTTCCEEEEEECTTSS
T ss_pred CcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe---------------------Eeee-cCCCCCEEEEEECCCCC
Confidence 5555444334444456899999999999998776541 1111 1488999999999 88
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecC-CCceEEEEcCCCCCeEEEEEe
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYS 535 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~s 535 (730)
+|++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||++ .+..+..+.+|.+.|.+++|+
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 999999 999999999999999999999999999999433 99999999999999999 567788889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCcee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHT 611 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s---~dg~I~iwd~~~~~~~ 611 (730)
|++++|++|+.|+.|++||+++++ .+. ...+|. ..|.+++|+|++..+++ + .|+.|++||+.+++.+
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~-----~~~-~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSI-----PKF-TKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSS-----EEE-EECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCC-----ccE-EecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 999999999999999999999843 233 344565 68999999997765554 4 4899999999999998
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 612 SQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 612 ~~~~~~~h~~~v~~~~~spdg~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
..+. +...+.+++|+|+++++++++ .||.|++||+.+++........ +| ...|. +++|+| ++.+|+
T Consensus 298 ~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h-~~~v~--~~~~s~-dg~~l~ 365 (401)
T 4aez_A 298 NTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AH-DTRVL--YSALSP-DGRILS 365 (401)
T ss_dssp EEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CC-SSCCC--EEEECT-TSSEEE
T ss_pred EEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CC-CCCEE--EEEECC-CCCEEE
Confidence 8885 367899999999999999954 8999999999997766554322 55 55688 999999 899999
Q ss_pred EEeCCCcEEEEeCCCCceeeec
Q 004789 690 LGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 690 s~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
+++.||.|++|++.+++.....
T Consensus 366 s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EECTTSEEEEEECCC-------
T ss_pred EEeCCCcEEEEECCCCcccccc
Confidence 9999999999999998765543
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=315.19 Aligned_cols=291 Identities=15% Similarity=0.217 Sum_probs=238.3
Q ss_pred CCcEEEEEEecCCC-EEEEE----------eCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCe
Q 004789 381 GGRVVRLIYSHSGD-FLVAL----------TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 449 (730)
Q Consensus 381 ~~~V~~v~fspdg~-~L~s~----------s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V 449 (730)
...|.+++|+|+|+ +|++| +.|+.|++||+.++.... .+.. . .|...|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~------------------~~~~-~--~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK------------------PIAS-L--QVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS------------------CSCC-C--CCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc------------------EEEE-E--ecCCce
Confidence 34678899999997 89999 889999999988765310 0000 1 488999
Q ss_pred eEEEEe--CcEEEEee-CCEEEEEEcCC----ceEEEEEcCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEecCCCc---
Q 004789 450 SCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--- 517 (730)
Q Consensus 450 ~~l~~s--~~~l~s~s-dg~I~vwd~~t----~~~~~~~~~~~~~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~~--- 517 (730)
.+++|+ +++|++++ ||.|++||+.+ .+.+..+.+|...|.+++|+|+ + +|++|+.|+.|++||+.+++
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999 88999999 99999999988 4588889999999999999999 6 99999999999999999886
Q ss_pred ---eEEE---EcCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC-
Q 004789 518 ---TKAK---LKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 589 (730)
Q Consensus 518 ---~~~~---~~~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg- 589 (730)
.... +.+|...|.+++|+|+ +.++++++.|+.|++||+++++............+|. ..|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHPKNS 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECSSCT
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC---CceEEEEECCCCC
Confidence 3322 3678999999999999 7899999999999999999865432211111111224 689999999997
Q ss_pred cEEEEE-ecC---cEEEEeCCCC-ceeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecccc
Q 004789 590 IHLLSI-HEG---QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 663 (730)
Q Consensus 590 ~~l~~s-~dg---~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 663 (730)
.+++++ .|+ .|++||++++ ..+..+. ..|...|.+++|+| ++++|++++.||.|++||+.+++.+..+.
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~---- 302 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---- 302 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE----
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec----
Confidence 577774 677 9999999986 4555553 14689999999999 99999999999999999999999888876
Q ss_pred cCCCCcccceeeEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCce
Q 004789 664 AQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 664 ~~~gh~~~~v~~~~v~~sp~~~-~~las~s~Dg~I~iWd~~~~~~ 707 (730)
+| ...|. +++|+| ++ .+|++++.||.|++|++.++..
T Consensus 303 ---~~-~~~v~--~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 303 ---AR-GNWCF--KTKFAP-EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ---CS-SSCCC--CEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ---CC-CCceE--EEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence 55 55688 999999 66 8999999999999999987754
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-35 Score=314.16 Aligned_cols=291 Identities=13% Similarity=0.103 Sum_probs=221.4
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
|.++|++++|+|+|++|++|+.|+.|++||+.++.. ..... ..+|...|.+++|+ ++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~--~~~h~~~v~~~~~s~~~~ 68 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHART--FSDHDKIVTCVDWAPKSN 68 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCC--BCCCSSCEEEEEECTTTC
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEE--EecCCceEEEEEEeCCCC
Confidence 678999999999999999999999999999876521 01111 11699999999999 88
Q ss_pred EEEEee-CCEEEEEEcCCce---EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCc---eEEEEcC-CCCC
Q 004789 458 HLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNR 528 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~---~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~---~~~~~~~-h~~~ 528 (730)
+|++++ |+.|++||+.+++ ....+..|...|.+++|+|++ .|++|+.|+.|++||+++++ ....+.+ |...
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 999999 9999999999887 677788999999999999999 99999999999999999887 4778887 9999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee-------------cceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 529 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~-------------~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
|++++|+|++++|++++.|+.|++||+...... ....+. .. +|. +.|.+++|+|++++|++
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-EY-PSG---GWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-CC-CCS---SSEEEEEECTTSSCEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh-cc-cCC---ceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999643211 122333 23 676 78999999999999998
Q ss_pred EecCcEEEEeCCCCce----eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE--EEEee---------
Q 004789 595 IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--RCQIN--------- 659 (730)
Q Consensus 595 s~dg~I~iwd~~~~~~----~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~--~~~~~--------- 659 (730)
+.||.|++||+.+++. +..+. .|...|.+++|+|+|++|++|+.++.+ +|+...... ...+.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred eCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 5899999999999887 66665 468899999999999999999766665 676552210 00000
Q ss_pred -------------------------c---------ccccCCCCcccceeeEEEEEecCCCC---EEEEEeCCCcEEEEeC
Q 004789 660 -------------------------L---------TAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIEP 702 (730)
Q Consensus 660 -------------------------~---------~~~~~~gh~~~~v~~~~v~~sp~~~~---~las~s~Dg~I~iWd~ 702 (730)
. ......+| .+.|. ++++.+.++. .|+|||.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~--~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIA--TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSC-SSCEE--EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccc-cceeE--EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 00011124 56677 8887663444 7999999999999985
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-33 Score=289.37 Aligned_cols=276 Identities=14% Similarity=0.147 Sum_probs=235.2
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++| |++++|++++.||.|++||+.+... ..... .|...|.+++|+ +
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------GTVVY--TGQGFLNSVCYDSEK 71 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------EEEEE--ECSSCEEEEEEETTT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------EEEee--cCCccEEEEEECCCC
Confidence 59999999999 9999999999999999999866543 11111 488999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCc---eEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 457 SHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~---~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
++|++++ ||.|++|++... +....+..|...|.+++| ++ .+++++.|+.|++|| .++....+..|...|.+
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence 8999999 999999998654 667888899999999999 45 999999999999999 67888889999999999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 004789 532 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 609 (730)
Q Consensus 532 l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~ 609 (730)
++|.| +++.+++++.||.|++||... ........|. ..|.+++|+|++. +++ +.||.|++||+++++
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence 99988 899999999999999999443 2231223355 6899999999999 555 689999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
.+..+.. |...|.+++|+|++ .|++++.||.|++||+.+++....+. +| ...|. +++|+| ++. ++
T Consensus 217 ~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~-~~~i~--~~~~~~-~~~-~~ 281 (313)
T 3odt_A 217 VLRTYEG--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-------LP-AISIW--SVDCMS-NGD-II 281 (313)
T ss_dssp EEEEEEC--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-------CS-SSCEE--EEEECT-TSC-EE
T ss_pred hhhhhhc--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-------cc-CceEE--EEEEcc-CCC-EE
Confidence 9888864 68999999999999 58899999999999999999888876 44 45677 999999 777 66
Q ss_pred EEeCCCcEEEEeCCCCcee
Q 004789 690 LGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 690 s~s~Dg~I~iWd~~~~~~~ 708 (730)
+++.||.|++|++.+++..
T Consensus 282 ~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 282 VGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEETTSCEEEEESCGGGCC
T ss_pred EEeCCCcEEEEeCCCCcee
Confidence 7999999999999877543
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-33 Score=304.05 Aligned_cols=280 Identities=14% Similarity=0.182 Sum_probs=230.7
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
..+++..+++++.|+.|++|++.. +.+..... ..|...|.+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---- 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADS----GSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---- 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT----CCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----
T ss_pred EeecCCCEEEEECCCeEEEeeCCC----CcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE----
Confidence 444567788999999999999963 33332222 13899999999999999999999999999999876653
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcC-CceEEEEEcCCCCCeEEEEEcCCC
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD 497 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~-t~~~~~~~~~~~~~v~~i~~spdg 497 (730)
+.... +|...|.+++|++++|++++ ||.|++||+. .+..+..+.+|...|.+++|+|++
T Consensus 169 -----------------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 169 -----------------LRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp -----------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred -----------------EEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 11111 69999999999988999999 9999999998 567788899999999999999999
Q ss_pred -eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCC-CEEEEEe--CCCcEEEEEcCCCceecceeecccccCC
Q 004789 498 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 498 -~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s--~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
.|++|+.|+.|++||+++++.+..+..|...|.+++|+|++ ..+++++ .|+.|++||+.+++. +..+ . +
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----~~~~-~-~ 302 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----VNTV-D-A 302 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----EEEE-E-C
T ss_pred CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----EEEE-e-C
Confidence 99999999999999999999999999999999999999976 4566654 799999999998543 2212 2 2
Q ss_pred CCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 574 VPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~--s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
. ..|.+++|+|+++++++ | .||.|++||+.+++........+|...|.+++|+|+|++|++++.||.|++|++.
T Consensus 303 ~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 303 G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 2 57999999999999998 3 5899999999987766655444678999999999999999999999999999999
Q ss_pred CceEEEEe
Q 004789 651 TLELRCQI 658 (730)
Q Consensus 651 ~~~~~~~~ 658 (730)
+++.+...
T Consensus 380 ~~~~~~~~ 387 (401)
T 4aez_A 380 DGDHVKRP 387 (401)
T ss_dssp C-------
T ss_pred CCcccccc
Confidence 98876554
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.9e-33 Score=302.63 Aligned_cols=282 Identities=15% Similarity=0.166 Sum_probs=236.2
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 460 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~ 460 (730)
.++.|+||+++ .||+| .|++|+|||..+++. .+.....+|...|++++|+ |++|+
T Consensus 107 y~~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~---------------------~~~~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred cceeEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCcEEEEEECCCCCEEE
Confidence 45679999864 56665 599999999877654 2222222588899999999 99999
Q ss_pred Eee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCC
Q 004789 461 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL 538 (730)
Q Consensus 461 s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~ 538 (730)
+|+ ||.|++||+.+++.+..+.+|...+.++++++. .+++|+.|+.+++||.... ..+..+.+|...+..+.|+|++
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence 999 999999999999999999999999999888543 9999999999999998865 5667888999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE-EEEE---ecCcEEEEeCCCCceeeee
Q 004789 539 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLSI---HEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 539 ~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~-l~~s---~dg~I~iwd~~~~~~~~~~ 614 (730)
+++++++.|+.+++||..+++... ..+. ....|. +.|.+++|+|++.. ++++ .|+.|++||+.+++++..+
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred CeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 999999999999999998864322 1222 345565 78999999997654 4442 5899999999999998887
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.. ...+.++.|+|+++.+++++ .||.|+|||+.+++++..+. || .+.|+ +++|+| ++++||||+
T Consensus 318 ~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~s 383 (420)
T 4gga_A 318 DA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASAA 383 (420)
T ss_dssp EC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEEE
T ss_pred cc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEe
Confidence 54 67899999999999988766 68999999999999998887 77 56688 999999 899999999
Q ss_pred CCCcEEEEeCCCCce
Q 004789 693 TNGRVHVIEPLESEV 707 (730)
Q Consensus 693 ~Dg~I~iWd~~~~~~ 707 (730)
.||+|+|||+.+.++
T Consensus 384 ~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 384 ADETLRLWRCFELDP 398 (420)
T ss_dssp TTTEEEEECCSCSSC
T ss_pred cCCeEEEEECCCCCc
Confidence 999999999987644
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=302.76 Aligned_cols=326 Identities=15% Similarity=0.164 Sum_probs=248.0
Q ss_pred cCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEe
Q 004789 351 KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY 429 (730)
Q Consensus 351 ~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~ 429 (730)
..++.+++|+++. ...... + .+|.+.|++++|+| +|++|++|+.||.|++||+.+...... .
T Consensus 20 ~~~~~~~v~~~~~----~~~~~~-~--~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------~ 82 (408)
T 4a11_B 20 RAESTRRVLGLEL----NKDRDV-E--RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY----------Y 82 (408)
T ss_dssp HHHHHHHHHTEEE----CTTEEE-C--CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC----------E
T ss_pred eccCcceeecccc----Ccceee-e--eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce----------E
Confidence 3456788888863 122221 1 24999999999999 999999999999999999987765222 0
Q ss_pred cCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC---C-eEEE
Q 004789 430 QPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D-LFAF 501 (730)
Q Consensus 430 ~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd---g-~l~s 501 (730)
..............+|...|.+++|+ +.+|++++ ||.|++||+.+++....+. +...+.++.++|. + .+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEE
Confidence 00000000000112589999999998 56899999 9999999999999988887 7778999999984 4 8999
Q ss_pred EECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecc----------eeecccc
Q 004789 502 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCS----------KFLHSFQ 570 (730)
Q Consensus 502 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~----------~~i~~~~ 570 (730)
|+.|+.|++||+++++.+..+.+|...|.+++|+|++. .+++++.||.|++||++++..... .......
T Consensus 162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 99999999999999999999999999999999999998 588999999999999987531110 0011122
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC---CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h---~~~v~~~~~spdg~~l~sgs~dg~I~i 646 (730)
.+|. ..|.+++|+|++++|++ +.||.|++||+.+++....+..... ...+........+..+++++.|+.|++
T Consensus 242 ~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 242 TAHN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp CSCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred cccc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE
Confidence 4555 78999999999999999 5899999999998877654432211 112222222334556777788999999
Q ss_pred EECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 647 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 647 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
||+.+++.+..+. +| ...|. +++|+| ++++|++|+.||.|++|++.+++..
T Consensus 319 ~d~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 319 YTVYSGEQITMLK-------GH-YKTVD--CCVFQS-NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EETTTCCEEEEEC-------CC-SSCEE--EEEEET-TTTEEEEEETTSCEEEEEECC----
T ss_pred EECcCCcceeeec-------cC-CCeEE--EEEEcC-CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 9999999988886 55 55688 999999 8999999999999999999988654
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.1e-33 Score=301.64 Aligned_cols=324 Identities=10% Similarity=0.060 Sum_probs=226.0
Q ss_pred cCCCC-CCCeeEeecCCCcEEEEeecCCCCCcceeeee------cCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEee
Q 004789 338 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLL------LPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 409 (730)
Q Consensus 338 ~~~sp-dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~------l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd 409 (730)
..++| ++++||+++.||+|++|++............. ....+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 57899 99999999999999999998543332222100 00024999999999999 788999999999999999
Q ss_pred cCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-----CcEEEEee-CCEEEEEEcCCceEEEEEcC
Q 004789 410 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFAN 483 (730)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-----~~~l~s~s-dg~I~vwd~~t~~~~~~~~~ 483 (730)
+.+++. .... .+...+.+++++ +.++++++ +|.|++||+.+++.+..+..
T Consensus 129 ~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 129 TNTLQT---------------------ADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp TTTTEE---------------------EEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred CCCCcc---------------------ceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 877654 1111 266788899988 33888888 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCc-eEEEE---------------cCCCCCeEEEEEeCCCCEEEEEe
Q 004789 484 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSSG 545 (730)
Q Consensus 484 ~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~spd~~~l~s~s 545 (730)
|...|.+++|+|++ .+++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 99999999999999 58999999999999998775 44444 56889999999999999999999
Q ss_pred CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 004789 546 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 625 (730)
Q Consensus 546 ~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 625 (730)
.||.|++||+.+++........ ....... ...........+.+++++.++.|++||+.+++.+..+. +|...|.+
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~v~~ 339 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGK-VCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--GHYKTVDC 339 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCC-CCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--CCSSCEEE
T ss_pred CCCeEEEEECCCCccceecccc-ccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--cCCCeEEE
Confidence 9999999999986532211111 0011110 12223333334555555799999999999999998886 46899999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 626 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 626 ~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
++|+|++++|++|+.||.|++||+.+++.+...... .. ...+.|.....+.+++.|+.+++|+..
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCc
Confidence 999999999999999999999999998876554311 11 233444345567778899999999875
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=285.12 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=231.4
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE
Q 004789 384 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 461 (730)
Q Consensus 384 V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s 461 (730)
.++|+||+++ .||+| .|++|+|||+.+++. ++.....+|...|.+++|+ +++|++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~---------------------~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 4679999987 56554 699999999877654 2222222688899999999 899999
Q ss_pred ee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEEEeCCCC
Q 004789 462 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 462 ~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
|+ ||+|++||+++++.+..+.+|...+.++.+.+. .+++|+.++.+++|+...+ ..+..+.+|...+..+.++++++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence 99 999999999999999999999998887665433 9999999999999998876 55677889999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE---E-ecCcEEEEeCCCCceeeeec
Q 004789 540 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I-HEGQIDVYEAPTLNHTSQLV 615 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~---s-~dg~I~iwd~~~~~~~~~~~ 615 (730)
++++++.|+.|++||+++++....... ....+. +.|.+++++|++..++. + .++.|++||...........
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQ--TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSE--EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred EEEEEecCcceeEEECCCCccccccee--eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999998653222111 233444 68999999997665442 2 67889999998887766653
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 616 PDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 616 ~~~h~~~v~~~~~spdg~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
+...+..++|+|++..+++++ .|+.|++||+.+++++..+. || .+.|+ +++|+| ++++|||||.
T Consensus 239 ---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~s~ 304 (318)
T 4ggc_A 239 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASAAA 304 (318)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEEET
T ss_pred ---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEec
Confidence 478899999999999888765 78999999999999999887 76 56688 999999 8999999999
Q ss_pred CCcEEEEeCCCCc
Q 004789 694 NGRVHVIEPLESE 706 (730)
Q Consensus 694 Dg~I~iWd~~~~~ 706 (730)
||+|+|||+.+.+
T Consensus 305 D~~v~iWd~~~~d 317 (318)
T 4ggc_A 305 DETLRLWRCFELD 317 (318)
T ss_dssp TTEEEEECCSCCC
T ss_pred CCeEEEEECCCCC
Confidence 9999999998764
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-32 Score=327.83 Aligned_cols=322 Identities=13% Similarity=0.144 Sum_probs=260.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||++||+++.||+|++||+.. ......+. +|.+.|.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~---~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-- 89 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYET---QVEVRSIQ----VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-- 89 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEE----CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC---CceEEEEe----cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 58999999999999999999999863 22333333 4999999999999999999999999999999877654
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCc-eEEEEEcCCCCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~-~~~~~~~~~~~~v~~i~~ 493 (730)
+.... +|...|.+++|+ +++|++++ ||.|++||+.++ .....+.+|...|.+++|
T Consensus 90 -------------------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 90 -------------------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred -------------------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 11111 699999999999 88999999 999999999987 778888999999999999
Q ss_pred cC-CC-eEEEEECCCcEEEEecCCCceEEEEcCCC-CCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCceecceeecc
Q 004789 494 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 494 sp-dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~sp--d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~ 568 (730)
+| ++ .+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+.+++ .+.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~- 222 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA- 222 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEE-
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEE-
Confidence 99 77 99999999999999999888777776644 8899999999 99999999999999999998854 233
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC--EEEEEEcCCeEE
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVK 645 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~--~l~sgs~dg~I~ 645 (730)
...+|. ..|.+++|+|++++++++ .||.|++||+.+++.+..+.. +...+.+++|+|+|. +++++ .++.+.
T Consensus 223 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 296 (814)
T 3mkq_A 223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASG-FDNGFT 296 (814)
T ss_dssp EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred EEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEE-eCCCEE
Confidence 345566 689999999999999995 789999999999998888864 478999999999987 45554 577788
Q ss_pred EEECCCceEEEEeecccc-c----------------------------------CCCCcccceeeEEEEEecCCCCEEEE
Q 004789 646 VFDTSTLELRCQINLTAY-A----------------------------------QPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 646 iwd~~~~~~~~~~~~~~~-~----------------------------------~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
+|++..+.....+.+... . ..+++...+. +++|+| +++++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sp-dg~~la~ 373 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ--SLAHSP-NGRFVTV 373 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS--EEEECT-TSSEEEE
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc--eeEECC-CCCEEEE
Confidence 999875433222211000 0 0011122345 889999 8888888
Q ss_pred EeCCCcEEEEeCCCC
Q 004789 691 GLTNGRVHVIEPLES 705 (730)
Q Consensus 691 ~s~Dg~I~iWd~~~~ 705 (730)
++ ||.+.+|++...
T Consensus 374 ~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 374 VG-DGEYVIYTALAW 387 (814)
T ss_dssp EE-TTEEEEEETTTT
T ss_pred ec-CCEEEEEECccc
Confidence 87 889999997644
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.9e-33 Score=300.00 Aligned_cols=280 Identities=10% Similarity=0.042 Sum_probs=230.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||+++++++.|+.|++|++.... ......+. +|...|.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~----~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 86 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELK----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-- 86 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEE----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE--
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeec----CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee--
Confidence 5789999999999999999999997311 00223332 4999999999999999999999999999999866542
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceE---EEE-EcCCCCCeEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---LAT-FANPPPIATY 490 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~---~~~-~~~~~~~v~~ 490 (730)
........|...|.+++|+ +++|++++ ||.|++||+.++.. ... ...|...|.+
T Consensus 87 -------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 87 -------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp -------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred -------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 1111111588999999999 88999999 99999999988762 333 3578999999
Q ss_pred EEEcCCC-eEEEEECCCcEEEEec------------------CCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 004789 491 FILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 551 (730)
Q Consensus 491 i~~spdg-~l~sgs~dg~I~iwd~------------------~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~ 551 (730)
++|+|++ .|++|+.|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 148 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999999 9999999999999995 46788899999999999999999999999999999999
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC--Cce--e----------------
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LNH--T---------------- 611 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~--~~~--~---------------- 611 (730)
+||+++++. +. ....|. ..|.+++|+|++++++++.|+.|++||+.+ +.. +
T Consensus 228 i~d~~~~~~-----~~-~~~~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 228 LADADKKMA-----VA-TLASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp EEEGGGTTE-----EE-EEECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred EEECCCCce-----eE-EEccCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 999988542 33 234555 689999999999999989999999999987 421 0
Q ss_pred --------------------eeecCCCCCCCeEEEEEe-cCC---CEEEEEEcCCeEEEEECCCce
Q 004789 612 --------------------SQLVPDKMDLPITYATYS-CDG---KCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 612 --------------------~~~~~~~h~~~v~~~~~s-pdg---~~l~sgs~dg~I~iwd~~~~~ 653 (730)
..+. .+|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp HHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1121 2678999999966 676 999999999999999997754
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.3e-34 Score=314.67 Aligned_cols=286 Identities=12% Similarity=0.133 Sum_probs=215.8
Q ss_pred cCCCC-CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~sp-dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
.+++| ++++||+|+.||+|+|||+.... ....+.+ .+|.+.|++++|+| ++.+|++|+.||+|++||+++...
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~---~~~~~~~--~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKD---KPTFIKG--IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCS---CCEEECC--CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCC---ceeEEEc--cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 57888 57899999999999999996422 1122222 46999999999998 789999999999999999876543
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 492 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~ 492 (730)
... .....+...+.+++|+ +.+|++|+ ||.|++||+. ++.+..+.+|...|++++
T Consensus 200 -----------~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 200 -----------RVF----------ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp -----------EEE----------ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEE
T ss_pred -----------eEE----------eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeee
Confidence 000 0111345567899999 88999999 9999999986 566778889999999999
Q ss_pred EcCCC--eEEEEECCCcEEEEecCCCceEEE---EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeec
Q 004789 493 LLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 493 ~spdg--~l~sgs~dg~I~iwd~~~~~~~~~---~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
|+|++ .+++|+.|+.|++||+++++.... ..+|...|++++|+|+|++|++++.||.|++||+.+++........
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 99998 788999999999999988754433 3569999999999999999999999999999999986533221111
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEEE-------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEE-EEecCCC
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYSCDGK 633 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~s-------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~-~~spdg~ 633 (730)
....... ..+....|+|++..++++ .++.|++||..+++.+..+.. +|...|.++ +|+|+|+
T Consensus 338 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~ 413 (435)
T 4e54_B 338 PHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGD 413 (435)
T ss_dssp CCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSS
T ss_pred ccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCC
Confidence 0000000 123345566666555543 235799999999999888764 467788887 6999999
Q ss_pred EEEEEEcCCeEEEEECCCceEE
Q 004789 634 CIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
+|++|+ |+.|+||++.+++..
T Consensus 414 ~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 414 TLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CEEEEC-SSEEEECCCC-----
T ss_pred EEEEEc-CCcEEEEECCcCeee
Confidence 999886 889999999988754
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=293.49 Aligned_cols=276 Identities=12% Similarity=0.104 Sum_probs=234.3
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|||++|++++.||.|++||+.. ......+ .+|.+.|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 108 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLN---GERLGTL----DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-- 108 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTT---CCEEEEE----CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCC---chhhhhh----hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 57899999999999999999999863 2233333 24999999999999999999999999999999877654
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C-----CEEEEEEcCCce-----------EE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ-----------TL 478 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d-----g~I~vwd~~t~~-----------~~ 478 (730)
+... .+...|.+++|+ ++++++++ + |.|.+||+.++. ..
T Consensus 109 -------------------~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 109 -------------------VATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp -------------------EEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred -------------------EEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 1111 267889999999 88999988 7 999999997653 33
Q ss_pred EEEcCCCC--CeEEEEEcCCC-eEEEEECCCcEEEEecCC-CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 004789 479 ATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 554 (730)
Q Consensus 479 ~~~~~~~~--~v~~i~~spdg-~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd 554 (730)
..+..|.. .+.+++|+|++ .+++|+.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 44556666 89999999999 999999999999999998 788889999999999999999999999999999999999
Q ss_pred cCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecC--------------cEEEEeCCCCceeeeecCCCC
Q 004789 555 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLNHTSQLVPDKM 619 (730)
Q Consensus 555 ~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg--------------~I~iwd~~~~~~~~~~~~~~h 619 (730)
+++++.... +. +. ..+.+++|+|++++++++ .++ .+++||+.+++.+..+.. |
T Consensus 247 ~~~~~~~~~-----~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~ 314 (369)
T 3zwl_B 247 VSTLQVLKK-----YE--TD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--H 314 (369)
T ss_dssp TTTCCEEEE-----EE--CS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--C
T ss_pred CCCCceeee-----ec--CC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--c
Confidence 998543221 11 22 579999999999999994 555 799999999999888864 6
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEE
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 656 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~ 656 (730)
...|.+++|+|++++|++++.||.|++|++.++....
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 8999999999999999999999999999998765433
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-32 Score=295.73 Aligned_cols=284 Identities=12% Similarity=0.126 Sum_probs=225.7
Q ss_pred cCCCCCC-CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCcc
Q 004789 338 STSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg-~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
..++|++ +++|+|+.||+|++||+.... ....+.. .+|.+.|.+++|+| ++++|++++.|+.|++||+.+...
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQN---KTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTT---CEEEECC--CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcc---cceeeec--CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 5789999 999999999999999997422 2222222 35999999999999 789999999999999999875322
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 492 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~ 492 (730)
..+ ....+|...|.+++|+ +++|++++ |+.|++||+ +++.+..+..|...|.+++
T Consensus 154 -----------~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 154 -----------QVF----------AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp -----------EEE----------ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred -----------EEE----------eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 001 1111466889999999 89999999 999999999 6888999999999999999
Q ss_pred EcCCC--eEEEEECCCcEEEEecCC----CceEEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceeccee
Q 004789 493 LLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 493 ~spdg--~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 565 (730)
|+|++ .+++|+.|+.|++||+++ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+++++......
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99999 799999999999999998 6677766 5999999999999 99999999999999999999865432211
Q ss_pred ecc-cccCCCC-------CCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 004789 566 LHS-FQTGLVP-------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 637 (730)
Q Consensus 566 i~~-~~~~h~~-------~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 637 (730)
... ....|.. ..+.+..++|+|++++ ..+.|+.|++||+.+++.+..+..+.|...+..++|+|+|++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 110 0111110 0023444666666666 224799999999999999999886556788888899999999999
Q ss_pred EEcCCeEEEEECCC
Q 004789 638 SCKSGHVKVFDTST 651 (730)
Q Consensus 638 gs~dg~I~iwd~~~ 651 (730)
|+ ||.|++||+.+
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999874
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-32 Score=286.18 Aligned_cols=246 Identities=13% Similarity=0.174 Sum_probs=203.2
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|.+.|++++|+|+|++||+|+.|++|+|||+..... .++..+ .+|...|.+++|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l--~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK 65 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEE--CCCSSCEEEEEECCGG
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEE--ccccCCeEEEEecCCC
Confidence 5999999999999999999999999999999864321 111111 1799999999996
Q ss_pred -CcEEEEee-CCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCCCc--eEEEEcCCC
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 526 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~ 526 (730)
+++|++|+ |++|++||+.+++ .+..+..|...|.+++|+|+ | .|++|+.|+.|++||++++. ....+.+|.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 67999999 9999999999874 56678889999999999998 7 99999999999999998763 245678899
Q ss_pred CCeEEEEEeCC-------------CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC---c
Q 004789 527 NRITCLAYSLS-------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---I 590 (730)
Q Consensus 527 ~~V~~l~~spd-------------~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg---~ 590 (730)
..|.+++|+|+ +++|++|+.|++|++||++++.... .... ...+|. ..|.+++|+|++ .
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 220 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCCCCce
Confidence 99999999997 5799999999999999998743211 1222 456787 799999999985 7
Q ss_pred EEEE-EecCcEEEEeCCCCc---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 591 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 591 ~l~~-s~dg~I~iwd~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+|++ +.|++|++||+++.. ....+....|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8888 589999999997643 11223223568899999999999999999999999999976
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-33 Score=304.38 Aligned_cols=303 Identities=10% Similarity=0.084 Sum_probs=224.2
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCe--eEeecccCCCC-----------
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPK----------- 446 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~h~----------- 446 (730)
|.+.|++++|+|+|++||+|+.||.|+||++.++..... ...+. +..... +|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~~~~~--~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS------------HSRGEYNVYSTFQ--SHEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C------------CCCCCEEEEEEEE--CCCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc------------ccccceeEecccc--cccccccccccccc
Confidence 789999999999999999999999999999987652100 00000 111111 576
Q ss_pred -CCeeEEEEe--C--cEEEEee-CCEEEEEEcCCceEE---------------------------------------EE-
Q 004789 447 -DSISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT- 480 (730)
Q Consensus 447 -~~V~~l~~s--~--~~l~s~s-dg~I~vwd~~t~~~~---------------------------------------~~- 480 (730)
..|.+++|+ + .+|++++ |+.|++||+.++... ..
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999 4 6899999 999999999875442 12
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC-CceEEE-------EcCCCCCeEEEEEeCCC-CEEEEEeCCCcE
Q 004789 481 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAK-------LKGHQNRITCLAYSLSL-NVLVSSGADAQL 550 (730)
Q Consensus 481 ~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~-~~~~~~-------~~~h~~~V~~l~~spd~-~~l~s~s~dg~I 550 (730)
..+|...|.+++|+|++ .|++| .|+.|++||+++ ++.+.. +.+|...|++++|+|++ ++|++|+.||.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 35799999999999999 99998 799999999984 444442 45799999999999998 999999999999
Q ss_pred EEEEcCCCceecceeecccccCCCC---------CCCCeEEEEEecCCcEEEEEecCcEEEEeCCC-CceeeeecCCCCC
Q 004789 551 CVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMD 620 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~~~~~h~~---------~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~-~~~~~~~~~~~h~ 620 (730)
++||+++++... ..+. ...+|.. ....|.+++|+|+|++|+++.++.|++||+++ ++++..+..+...
T Consensus 252 ~iwd~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCD-RHSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSC-TTCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCcccc-ceee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 999999854211 0122 2334430 00279999999999999997559999999997 8887777653210
Q ss_pred C-------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccc------c------CCC--------
Q 004789 621 L-------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY------A------QPG-------- 667 (730)
Q Consensus 621 ~-------------~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~------~------~~g-------- 667 (730)
. .+..++|+|++++|++|+.||.|++||+.+++.+........ . ..+
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 0 134599999999999999999999999999887642211000 0 000
Q ss_pred ----CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 668 ----TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 668 ----h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
.....|. .++|+| ++++||+++.++ +++|.-.
T Consensus 410 ~~~~~~~~~i~--~~~~~p-~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 410 VDSLDFNKKIL--HTAWHP-KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GGGCCTTSCCC--EEEECS-SSSEEEEECSSC-EEEEECC
T ss_pred ccccccCCcee--EEEECC-CCCEEEEEecce-eeeeccc
Confidence 0123455 899999 899999998775 7788643
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=283.84 Aligned_cols=276 Identities=10% Similarity=0.066 Sum_probs=230.0
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..+ |+++++++++.||.|++||+.. ......+. +|.+.|.+++|+|++++|++++.||.|++|++.....
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~---~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-- 93 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDD---QWLGTVVY----TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-- 93 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESS---SEEEEEEE----ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCC---CEEEEEee----cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--
Confidence 356 9999999999999999999963 22222222 3899999999999999999999999999999865432
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcC-
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP- 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~sp- 495 (730)
+...... .+|...|.+++|+++++++++ ||.|++|| .++....+..|...+.+++|+|
T Consensus 94 ----------------~~~~~~~--~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 94 ----------------EDPLYTL--IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp ----------------SCC-CEE--CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred ----------------CCcccch--hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence 1111111 169999999999988999999 99999999 7888899999999999999998
Q ss_pred CC-eEEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCC
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
++ .+++++.|+.|++|| .++....+.. |...|.+++|+|++. +++++.||.|++||+++++ .+. ...+|
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-----~~~-~~~~~ 224 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-----VLR-TYEGH 224 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-----EEE-EEECC
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-----hhh-hhhcC
Confidence 77 999999999999999 5667777877 999999999999998 9999999999999999854 333 34566
Q ss_pred CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 574 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
. +.|++++|+|++.+++++.||.|++||+++++.+..+.. |...|.+++|+|+++ +++++.||.|++||+.+++
T Consensus 225 ~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 225 E---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp S---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred C---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 6 789999999999544446999999999999999888864 578999999999998 5678899999999999887
Q ss_pred EEEEe
Q 004789 654 LRCQI 658 (730)
Q Consensus 654 ~~~~~ 658 (730)
.....
T Consensus 299 ~~~~~ 303 (313)
T 3odt_A 299 WASED 303 (313)
T ss_dssp CCC--
T ss_pred eeehh
Confidence 65443
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-33 Score=304.06 Aligned_cols=289 Identities=12% Similarity=0.081 Sum_probs=227.8
Q ss_pred cCCCC-CCCeeEeecCCCcEEEEeecCCCCCc---ceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecC--
Q 004789 338 STSLP-DADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-- 411 (730)
Q Consensus 338 ~~~sp-dg~~lat~~~dg~i~lWd~~~~~~~~---~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~-- 411 (730)
..++| |+++||+|+.||+|++||+....... ....+ +|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence 57899 99999999999999999997411111 11221 389999999999999999999999999999985
Q ss_pred -CCccccccccccceeeEecCCCCeeEeec-ccC-CCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCceEEEEEcC
Q 004789 412 -SNKQSLEEENVNMESQLYQPSSKLVMTND-IAA-DPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN 483 (730)
Q Consensus 412 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~~~~~~~~ 483 (730)
.++.... .. +..+... +.. ++...+.++.+. +.+|++++ ||.|++||+.+++.+..+..
T Consensus 144 ~~~~~~~~----------~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 144 QQESEVKF----------LN---CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp EETTEEEE----------EE---EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred cCCceeec----------cc---cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 3322111 00 0011111 100 166788888855 78899999 99999999999999999998
Q ss_pred --CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc-CCCCCeEEEEEeC----CCCEEEEEeCCCcEEEEEc
Q 004789 484 --PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL----SLNVLVSSGADAQLCVWDA 555 (730)
Q Consensus 484 --~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp----d~~~l~s~s~dg~I~vwd~ 555 (730)
|...|++++|+|++ .|++|+.||.|++||+++++++..+. .|...|++++|+| ++.+|++|+.||.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 88999999999999 99999999999999999999999886 6888999996654 6789999999999999999
Q ss_pred CCCceecceeecc------------------cccC--CCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeee
Q 004789 556 VGWKKLCSKFLHS------------------FQTG--LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 556 ~~~~~~~~~~i~~------------------~~~~--h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~ 614 (730)
++++......-.. ...+ |. ..|++++|+ ++++|+++ .|+.|++||+.+++....+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccC---CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 9865432211000 0111 44 679999999 77888885 8999999999998877776
Q ss_pred cCC-----------------------------------CCCCCeEEEEEecC--CCEEEEEEcCCeEEEEE
Q 004789 615 VPD-----------------------------------KMDLPITYATYSCD--GKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 615 ~~~-----------------------------------~h~~~v~~~~~spd--g~~l~sgs~dg~I~iwd 648 (730)
..+ .|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 542 17899999999988 78999999999999995
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-31 Score=296.39 Aligned_cols=279 Identities=13% Similarity=0.160 Sum_probs=236.2
Q ss_pred CCCCcE-EEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-C
Q 004789 379 SFGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 456 (730)
Q Consensus 379 gh~~~V-~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~ 456 (730)
+|.+.| .++.| ++++|++|+.||+|++||+.+++. +.... +|...|.+++|+ +
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~V~~l~~~~~ 173 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------LLQLS--GHDGGVWALKYAHG 173 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE---------------------EEEEC--CCSSCEEEEEECST
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEe--CCCcCEEEEEEcCC
Confidence 387775 55555 577999999999999999876653 11111 699999999999 6
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEc--CCC-eEEEEECCCcEEEEecCCCc---------------
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--PQD-LFAFGFDDSSILVHCPCTKK--------------- 517 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~s--pdg-~l~sgs~dg~I~iwd~~~~~--------------- 517 (730)
.++++|+ ||+|++||+.+++.+..+.+|...|.+++|+ +++ .+++|+.|+.|++||+.++.
T Consensus 174 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred CEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 6999999 9999999999999999999999999999998 577 99999999999999998765
Q ss_pred --------eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC
Q 004789 518 --------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 518 --------~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg 589 (730)
.+..+.+|...|.++ +++++++++|+.||.|++||+++++ .+. ...+|. ..|.+++|+|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~-~~~~~~---~~v~~~~~~~~~ 322 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-----CLY-ILSGHT---DRIYSTIYDHER 322 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEEETTT
T ss_pred eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCEEEEEEcCCC
Confidence 255678899998887 5678899999999999999999853 333 345676 789999999999
Q ss_pred cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCC
Q 004789 590 IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 668 (730)
Q Consensus 590 ~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh 668 (730)
+++++ +.||.|++||+++++.+..+.. |...|.+++|+ +.+|++|+.||.|++||+.++.......
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--------- 389 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--------- 389 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---------
Confidence 99999 4899999999999999988864 68999999997 6899999999999999999987665542
Q ss_pred cccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 669 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 669 ~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
+...+. .++|+| ++.++++|+ ||.|++||+.+++....
T Consensus 390 ~~~~~~--~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 390 HTNLSA--ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp CTTCCC--EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred CCCCcc--EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 244456 788999 889999998 89999999999987654
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.6e-33 Score=296.06 Aligned_cols=283 Identities=11% Similarity=0.081 Sum_probs=226.6
Q ss_pred cCCCCC----CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC----CCEEEEEeCCCcEEEee
Q 004789 338 STSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWK 409 (730)
Q Consensus 338 ~~~spd----g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd----g~~L~s~s~dg~I~iWd 409 (730)
..++|+ ...+++++.++.|++|++........+..... ..|...|.+++|+|+ |++|++|+.||.|++||
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d 101 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD--ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN 101 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc--cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence 467773 44566666677999999974332223333222 227899999999999 67999999999999999
Q ss_pred cCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEE---c
Q 004789 410 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF---A 482 (730)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~---~ 482 (730)
+.+++. +.... +|...|.+++|+ +++|++++ ||.|++||+.+++.+..+ .
T Consensus 102 ~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 158 (366)
T 3k26_A 102 PITMQC---------------------IKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158 (366)
T ss_dssp TTTCCE---------------------EEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred chhceE---------------------eeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence 876653 11111 599999999998 78999999 999999999999999998 6
Q ss_pred CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE----------------------------cCCCCCeEEEE
Q 004789 483 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----------------------------KGHQNRITCLA 533 (730)
Q Consensus 483 ~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~----------------------------~~h~~~V~~l~ 533 (730)
.|...|.+++|+|++ .|++|+.||.|++||+++++....+ .+|...|.+++
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 899999999999999 9999999999999999987654333 33999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceec---------ceeecccccCCCCCCCCeEEEEEecC--CcEEEEE-ecCcEE
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQID 601 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~---------~~~i~~~~~~h~~~~~~v~~l~~spd--g~~l~~s-~dg~I~ 601 (730)
|+ ++++++++.|+.|++||+.++.... ...+. ...+|. ..|++++|+|+ +++|+++ .||.|+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ---CDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS---CCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec-cccccC---CcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 99 7799999999999999998754310 01122 344555 68999999999 9999995 889999
Q ss_pred EEeCCCCcee----eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 602 VYEAPTLNHT----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 602 iwd~~~~~~~----~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
+||+.+++.. ..+..+.|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999987643 3565544579999999999999999999999999999853
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-32 Score=290.29 Aligned_cols=279 Identities=13% Similarity=0.108 Sum_probs=232.2
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|+|++|++++.||.|++|++.++.... ...... +|...|.+++|+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------~~~~~~--~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------------------DLLQSL--RYKHPLLCCNFIDNT 68 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE------------------EEEEEE--ECSSCEEEEEEEESS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc------------------cceeee--ecCCceEEEEECCCC
Confidence 599999999999999999999999999999987664200 001111 588999999999 8
Q ss_pred c-EEEEee-CCEEEEEEc-CCceEEEEEcC--CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC---------CceEEE
Q 004789 457 S-HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAK 521 (730)
Q Consensus 457 ~-~l~s~s-dg~I~vwd~-~t~~~~~~~~~--~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~---------~~~~~~ 521 (730)
+ +|++++ ||.|++||+ .+++. ..+.+ |...|.+++|+| + .+++++.|+.|++||+++ ++++..
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 8 899999 999999999 87765 67778 999999999999 8 999999999999999987 766666
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CceecceeecccccCCCCCCCCeEEEEEec-CCcEEEE-EecC
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG 598 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~-~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~-s~dg 598 (730)
+. |...|.+++|+|++ +++++.|+.|++||+++ +... .......|. ..|.+++|+| +++++++ +.||
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLK---YQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CEEEECSCS---SCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ceeeecCCC---CceeEEEECCCCCCEEEEEecCC
Confidence 66 88999999999987 99999999999999987 4321 111233444 6899999999 9999998 5899
Q ss_pred cEEEEeCCCC------ceeeeecCCC-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC
Q 004789 599 QIDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 665 (730)
Q Consensus 599 ~I~iwd~~~~------~~~~~~~~~~-------h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 665 (730)
.|++||+... +....+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------ 290 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------ 290 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh------
Confidence 9999999876 6666665431 23499999999999999999999999999999999888876
Q ss_pred CCCcccceeeEEEEEecCCCCEEEEEeCCCc-EEEEe
Q 004789 666 PGTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE 701 (730)
Q Consensus 666 ~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~-I~iWd 701 (730)
+||...|. +++ | ++++|++|+.||. .+.|.
T Consensus 291 -~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 -KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred -cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence 66566788 777 7 8999999999998 55554
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.4e-32 Score=295.34 Aligned_cols=277 Identities=17% Similarity=0.214 Sum_probs=227.9
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCccee-eeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~-~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
.+|++ +.||+|. |++|+|||.. ++.+. .+.+ ++|.+.|++|+|+|+|++||+|+.||+|+|||+++++.
T Consensus 112 ~wS~~-n~lAvgl-d~tV~lWd~~----tg~~~~~~~~--~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-- 181 (420)
T 4gga_A 112 DWSSG-NVLAVAL-DNSVYLWSAS----SGDILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 181 (420)
T ss_dssp EECTT-SEEEEEE-TTEEEEEETT----TCCEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred EECCC-CEEEEEe-CCEEEEEECC----CCCEEEEEEe--cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--
Confidence 45654 5787775 8999999996 33433 3333 35899999999999999999999999999999877654
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCC-ceEEEEEcCCCCCeEEEEEcC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t-~~~~~~~~~~~~~v~~i~~sp 495 (730)
+.... +|...|.++++++.+|++|+ |+.+++||... ...+..+.+|...+..+.|+|
T Consensus 182 -------------------~~~~~--~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 182 -------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp -------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -------------------EEEEe--CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 12111 69999999999999999999 99999999876 456678899999999999999
Q ss_pred CC-eEEEEECCCcEEEEecCCCc----eEEEEcCCCCCeEEEEEeCCC-CEEEE--EeCCCcEEEEEcCCCceecceeec
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVS--SGADAQLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~spd~-~~l~s--~s~dg~I~vwd~~~~~~~~~~~i~ 567 (730)
++ .+++++.|+.|++||..+++ .+.....|...|.+++|+|++ ..+++ |+.|++|++||+.++... .
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-----~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----E
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----e
Confidence 99 99999999999999998764 456677899999999999966 45554 457999999999996532 2
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~s---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
....+ ..+.++.|+|+++.++++ .|+.|++||+.+++++..+. +|...|++++|+|||++|++|+.||+|
T Consensus 316 -~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 316 -AVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp -EEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred -eeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 22233 479999999999998873 58999999999999999886 479999999999999999999999999
Q ss_pred EEEECCCceEEEEe
Q 004789 645 KVFDTSTLELRCQI 658 (730)
Q Consensus 645 ~iwd~~~~~~~~~~ 658 (730)
+|||+.........
T Consensus 389 riWdv~~~~~~~~~ 402 (420)
T 4gga_A 389 RLWRCFELDPARRR 402 (420)
T ss_dssp EEECCSCSSCC---
T ss_pred EEEECCCCCccchh
Confidence 99999876544443
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-32 Score=321.47 Aligned_cols=285 Identities=15% Similarity=0.241 Sum_probs=245.5
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|.+++|+|+|++||+++.||.|+|||+.++.. +.... +|...|.+++|+ +
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------------------~~~~~--~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARK 67 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGG
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------EEEEe--cCCCcEEEEEEeCCC
Confidence 4999999999999999999999999999999876543 11111 599999999999 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 533 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~ 533 (730)
++|++++ ||.|++||+.+++.+..+.+|...|++++|+|++ .|++|+.||.|++||+.++ .....+.+|...|.+++
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 8999999 9999999999999999999999999999999999 9999999999999999987 77788889999999999
Q ss_pred EeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--CCcEEEEE-ecCcEEEEeCCCCc
Q 004789 534 YSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEAPTLN 609 (730)
Q Consensus 534 ~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--dg~~l~~s-~dg~I~iwd~~~~~ 609 (730)
|+| ++..+++++.||.|++||+.++.. .......+. ..+.+++|+| ++.+++++ .||.|++||+.+++
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEecCCC---CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 999 889999999999999999987532 221233343 5799999999 99999995 88999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC-EE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RI 688 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~l 688 (730)
.+..+.. |...|.+++|+|++.+|++++.||.|++||+.+++....+. .| ...++ +++|+| ++. .+
T Consensus 220 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-------~~-~~~v~--~~~~~~-~~~~~~ 286 (814)
T 3mkq_A 220 CVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-------VG-LERSW--CIATHP-TGRKNY 286 (814)
T ss_dssp EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-------CS-SSSEE--EEEECT-TCGGGE
T ss_pred EEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-------cC-CCcEE--EEEEcc-CCCceE
Confidence 8888864 68899999999999999999999999999999999888776 33 45677 999999 555 33
Q ss_pred EEEeCCCcEEEEeCCCCce
Q 004789 689 ALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 689 as~s~Dg~I~iWd~~~~~~ 707 (730)
++++.|+.+.+|++..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEETTEEEEEECSCCSC
T ss_pred EEEEeCCCEEEEEcCCCCc
Confidence 4444577899999876543
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-33 Score=301.18 Aligned_cols=283 Identities=11% Similarity=0.011 Sum_probs=214.6
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
....++|||++||+++.|++|++|++.... ..+ ...+ .+|.+.|++++|+|+|++|++++.|+.|++||+.++..
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~-~~~~--~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKH-ARTF--SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTE--EEE-CCCB--CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCc--eEE-EEEE--ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 346899999999999999999999997310 011 1122 35999999999999999999999999999999877651
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce---EEEEEcC-CCCCe
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN-PPPIA 488 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~---~~~~~~~-~~~~v 488 (730)
. ..... ..+|...|.+++|+ +++|++++ |+.|++||+.+++ ....+.. |...|
T Consensus 90 ~------------------~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v 149 (377)
T 3dwl_C 90 W------------------KQTLV--LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI 149 (377)
T ss_dssp C------------------CCEEE--CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred e------------------eeeeE--ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence 0 00011 11689999999999 88999999 9999999999887 4677777 99999
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEecC------------------CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCc
Q 004789 489 TYFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 549 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~dg~I~iwd~~------------------~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~ 549 (730)
.+++|+|++ .|++|+.|+.|++||+. .++++..+ +|...|++++|+|++++|++++.||.
T Consensus 150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 150 LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 999999999 99999999999999985 35566667 89999999999999999999999999
Q ss_pred EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce--e----------------
Q 004789 550 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--T---------------- 611 (730)
Q Consensus 550 I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~--~---------------- 611 (730)
|++||+.+++... ..+. ...+|. ..|.+++|+|++++|+++.++.+.+|+...... .
T Consensus 229 i~iwd~~~~~~~~-~~~~-~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3dwl_C 229 VTIAYPSAPEQPP-RALI-TVKLSQ---LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTG 303 (377)
T ss_dssp EC-CEECSTTSCE-EECC-CEECSS---SCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSS
T ss_pred EEEEECCCCCCcc-eeeE-eecCCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccc
Confidence 9999999864311 1133 455666 689999999999999998777777888752210 0
Q ss_pred ------------------eeec--------------CCCCCCCeEEEEEecC-CC---EEEEEEcCCeEEEEEC
Q 004789 612 ------------------SQLV--------------PDKMDLPITYATYSCD-GK---CIYVSCKSGHVKVFDT 649 (730)
Q Consensus 612 ------------------~~~~--------------~~~h~~~v~~~~~spd-g~---~l~sgs~dg~I~iwd~ 649 (730)
..+. ...|...|+++++.++ +. .|++|+.||.|++||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 0127889999997654 33 6999999999999985
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.3e-32 Score=297.88 Aligned_cols=279 Identities=15% Similarity=0.191 Sum_probs=228.4
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 459 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l 459 (730)
|...|.+++| +|++|++|+.||.|++||+.+++. ..... +|...|.+++|.+++|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------~~~~~--~h~~~v~~l~~~~~~l 186 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------KRILT--GHTGSVLCLQYDERVI 186 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------EEEEC--CCSSCEEEEECCSSEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------EEEEc--CCCCcEEEEEECCCEE
Confidence 7788998877 899999999999999999876654 11111 6999999999999999
Q ss_pred EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceE---EEEcCCCCCeEEEEEe
Q 004789 460 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYS 535 (730)
Q Consensus 460 ~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s 535 (730)
++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.++... ..+.+|...|.+++|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999 999999999999999999999999999999744 9999999999999999988655 677889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 004789 536 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 536 pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~ 614 (730)
+++++++|+.||.|++||+++++ .+. ...+|. ..|.+++++ +.++++ +.||.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~-----~~~-~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCE-----FVR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCC-----EEE-EEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCc-----EEE-EEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 67899999999999999999854 233 345666 689999984 678888 58999999999999999888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce---------EEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
.. |...|.+++| ++.+|++|+.||.|++||+.++. .+..+. +| .+.|. +++| ++
T Consensus 333 ~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~l~~---~~ 395 (435)
T 1p22_A 333 EG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EH-SGRVF--RLQF---DE 395 (435)
T ss_dssp CC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-------CC-SSCCC--CEEE---CS
T ss_pred eC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-------CC-CCCeE--EEEe---CC
Confidence 64 6889999998 78999999999999999997765 566654 55 55688 8888 46
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 686 NRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
.+|++|+.||.|++||+.++.......++
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 424 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEPPR 424 (435)
T ss_dssp SCEEECCSSSEEEEEC-------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCCCC
Confidence 78999999999999999987665444443
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-32 Score=295.05 Aligned_cols=289 Identities=10% Similarity=0.061 Sum_probs=216.4
Q ss_pred cCCCCCCCeeEeecCCC-------cEEEEeecCCCCCc-----ceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC----
Q 004789 338 STSLPDADSAVCAKSLE-------KSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---- 401 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg-------~i~lWd~~~~~~~~-----~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~---- 401 (730)
.+++|||++||+||.|. .|++|+++...... ....+.+. +|.+.|.+++++ ++.+++|+.
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~--~~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE--DNDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC--TTSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc--CCCCceEEEEeC--CCEEEEEECCCcc
Confidence 57899999999997643 59999997543221 11223343 488888887665 556676654
Q ss_pred -------CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE--ee-CCEEEE
Q 004789 402 -------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS--AS-GGKISI 469 (730)
Q Consensus 402 -------dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s--~s-dg~I~v 469 (730)
|+.+++|++........ .+. ..+......+...+.+++|+ |+++++ ++ |++|++
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLE---------FLT-----SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEE---------EEE-----EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEecCCCcEEEEEecCCCceEE---------Eee-----eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 56677777654432110 000 00111111456779999999 888764 44 799999
Q ss_pred EEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE--EcCCCCCeEEEEEeCCCCEEEEEeC
Q 004789 470 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGA 546 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~spd~~~l~s~s~ 546 (730)
||+.+++++..+. |...|.+++|+||| ++++++.+ .+++|+..++..+.. ..+|...|.+++|+|+++.+++++.
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999999886 77789999999999 88888755 567777777765543 3568889999999999999999998
Q ss_pred CC----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 004789 547 DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 621 (730)
Q Consensus 547 dg----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~ 621 (730)
|+ .+++||+......... .. ...+|. ..|++++|+|||++||+ +.|++|+|||+++++++..+.. +|..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~ 313 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLR-SK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSF 313 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEE-EE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSS
T ss_pred CCcceeEEeecccccceeccee-ee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccC
Confidence 87 6888998775432111 12 345666 68999999999999999 5899999999999999887653 5799
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
.|++++|||||++|++|+.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999653
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=291.65 Aligned_cols=282 Identities=12% Similarity=0.120 Sum_probs=222.5
Q ss_pred cCCCCCCCee-EeecC---CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC---CCEEEEEeCCCcEEEeec
Q 004789 338 STSLPDADSA-VCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKW 410 (730)
Q Consensus 338 ~~~spdg~~l-at~~~---dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd---g~~L~s~s~dg~I~iWd~ 410 (730)
..++|++..+ ++++. ||+|++|++.. +....... .+|.+.|.+++|+|+ |++|++|+.||.|++||+
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCC----Ccccceee--ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 5789999655 56665 89999999973 23322211 138999999999999 699999999999999998
Q ss_pred CCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE------e--CcEEEEee-CCEEEEEEcCCce-EEEE
Q 004789 411 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIFSLETFQ-TLAT 480 (730)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~------s--~~~l~s~s-dg~I~vwd~~t~~-~~~~ 480 (730)
.++.. .+... .+|...|.+++| + +++|++++ ||.|++||+.+++ .+..
T Consensus 98 ~~~~~--------------------~~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 98 EAPEM--------------------PVYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp TSCSS--------------------CSEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCCCc--------------------cEEEE--EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 87652 00111 169999999965 4 77999999 9999999999887 6777
Q ss_pred EcCCCC----CeEEEE----EcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC---CCCEEEEEeCCC
Q 004789 481 FANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADA 548 (730)
Q Consensus 481 ~~~~~~----~v~~i~----~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp---d~~~l~s~s~dg 548 (730)
+..|.+ .+.+++ |+|++ .+++|+.|+.|++||+++++.... ..|...|.+++|+| ++.++++++.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 766554 788998 67899 999999999999999999887554 45889999999999 999999999999
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCc-----------------
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN----------------- 609 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~-~l~~-s~dg~I~iwd~~~~~----------------- 609 (730)
.|++||+++++........ ...+|. ..|++++|+|+++ ++++ +.||.|++||++++.
T Consensus 235 ~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~ 310 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS 310 (357)
T ss_dssp EEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred eEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence 9999999875432222211 223666 7999999999998 6777 589999999997543
Q ss_pred --eeeeecCCCCCCCeEEEEEecCCCEEE-EEEcCCeEEEEECCCceE
Q 004789 610 --HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL 654 (730)
Q Consensus 610 --~~~~~~~~~h~~~v~~~~~spdg~~l~-sgs~dg~I~iwd~~~~~~ 654 (730)
.+..+. .|...|.+++|+|+|++|+ +++.||.|++||+.+.+.
T Consensus 311 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 311 VSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 344444 4689999999999999998 899999999999987653
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.7e-32 Score=279.96 Aligned_cols=249 Identities=11% Similarity=0.077 Sum_probs=206.1
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCC--ceEEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCC
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 515 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t--~~~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~ 515 (730)
+|...|.+++|+ |++|++|+ |++|++||+.+ ++.+.++.+|...|.+++|+++ + .|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 799999999999 99999999 99999999974 4678899999999999999864 7 999999999999999998
Q ss_pred Cc--eEEEEcCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---
Q 004789 516 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 588 (730)
Q Consensus 516 ~~--~~~~~~~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd--- 588 (730)
++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.... .. ...+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~-~~~~h~---~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 159 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CE-EEECCS---SCEEEEEECCCC--
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---ee-eeeccc---CccceEeecCCccc
Confidence 74 56778889999999999997 8899999999999999998743111 11 345677 68999999997
Q ss_pred ----------CcEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEecCC---CEEEEEEcCCeEEEEECC
Q 004789 589 ----------QIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 589 ----------g~~l~~-s~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~spdg---~~l~sgs~dg~I~iwd~~ 650 (730)
+++|++ +.|+.|++||+++++ ....+. +|...|.+++|+|++ .+|++|+.|++|++||+.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 468888 589999999998765 444554 579999999999985 899999999999999998
Q ss_pred Cce---EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 004789 651 TLE---LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 651 ~~~---~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
++. ....+.. .+| ...|+ +++|+| ++++||+++.||.|+||+.... ..|..
T Consensus 238 ~~~~~~~~~~~~~-----~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~~ 291 (297)
T 2pm7_B 238 NEQGPWKKTLLKE-----EKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWEP 291 (297)
T ss_dssp STTSCCEEEESSS-----SCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEEE
T ss_pred CCCCccceeeeec-----ccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEEe
Confidence 743 1122211 134 45677 999999 8999999999999999998643 34554
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.2e-31 Score=289.17 Aligned_cols=280 Identities=19% Similarity=0.217 Sum_probs=237.3
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcE
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 458 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 458 (730)
+|.+.|.. +++++|++|++|+.||.|++||+.+++. +.... +|...|.+++|++++
T Consensus 116 ~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~ 171 (445)
T 2ovr_B 116 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------LRTLV--GHTGGVWSSQMRDNI 171 (445)
T ss_dssp CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------EEECC--CCSSCEEEEEEETTE
T ss_pred ccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE---------------------EEEEc--CCCCCEEEEEecCCE
Confidence 48887643 3666799999999999999999876654 11111 699999999999889
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 537 (730)
+++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.+..+.+|...|.+++| +
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D 248 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C
Confidence 99999 999999999999999999999999999999643 8999999999999999999999999999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 004789 538 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 538 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~ 616 (730)
++++++|+.||.|++||+++++ .+. ...+|. ..|.+++| ++.++++ +.||.|++||+++++.+..+..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~-----~~~-~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETET-----CLH-TLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTE-----EEE-EECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCc-----EeE-EecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 8899999999999999998853 333 345666 68999999 7888888 5899999999999999888864
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCc
Q 004789 617 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 696 (730)
Q Consensus 617 ~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~ 696 (730)
|...+.++.+ +++++++|+.||.|++||+.+++.+..+... ..+...|. +++|++ ++|++|+.||.
T Consensus 318 --~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~--~~~~~~---~~l~s~~~dg~ 383 (445)
T 2ovr_B 318 --HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-----NKHQSAVT--CLQFNK---NFVITSSDDGT 383 (445)
T ss_dssp --CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-----TSCSSCEE--EEEECS---SEEEEEETTSE
T ss_pred --CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-----CCCCCCEE--EEEECC---CEEEEEeCCCe
Confidence 5788887776 4679999999999999999999988887632 11355677 888854 79999999999
Q ss_pred EEEEeCCCCceeee
Q 004789 697 VHVIEPLESEVEWG 710 (730)
Q Consensus 697 I~iWd~~~~~~~w~ 710 (730)
|++||+.+++....
T Consensus 384 v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 384 VKLWDLKTGEFIRN 397 (445)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEECCCCceeee
Confidence 99999999876543
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.4e-32 Score=293.86 Aligned_cols=283 Identities=12% Similarity=0.151 Sum_probs=231.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCc---ceeeeecCCCCCCCcEEEEEEecC----C---CEEEEEeCCCcEEE
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHS----G---DFLVALTQTATHKL 407 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~---~~~~~~l~~~gh~~~V~~v~fspd----g---~~L~s~s~dg~I~i 407 (730)
..++| ++|++++.||+|++|++....... ....+. +|...|.+++|+|+ | ++|++++.||.|++
T Consensus 22 ~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 22 VSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF----VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp EEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE----CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred EEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe----cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 45677 899999999999999997532110 233332 49999999999999 9 99999999999999
Q ss_pred eecCCCccccccccccceeeEecCCCCeeEeecccCCC-----CCCeeEEEEe------CcE-EEEee-CCEEEEEEcCC
Q 004789 408 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS-GGKISIFSLET 474 (730)
Q Consensus 408 Wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h-----~~~V~~l~~s------~~~-l~s~s-dg~I~vwd~~t 474 (730)
|++.++..... ....... .| ...|.+++|+ +++ |++++ ||.|++||+.+
T Consensus 96 w~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 96 YRITREDETKK----------------VIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEECTTTCC----------------EEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred EEccCCccccc----------------ccceeec--ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 99876653000 0011111 35 5899999998 778 99998 99999999998
Q ss_pred ------ceEEE-----EE-------cCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcC---C---CCCeE
Q 004789 475 ------FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---H---QNRIT 530 (730)
Q Consensus 475 ------~~~~~-----~~-------~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~---h---~~~V~ 530 (730)
++.+. .+ ..|...|.+++|+|++.+++|+.|+.|++||+++++.+..+.. | ...|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence 66665 66 4588899999999988888899999999999999999999998 8 99999
Q ss_pred EEEEeCCCCEEEEEeCC---CcEEEEEcCCCceecceeecccccC-------------CCCCCCCeEEEEEecCCcEEEE
Q 004789 531 CLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG-------------LVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~d---g~I~vwd~~~~~~~~~~~i~~~~~~-------------h~~~~~~v~~l~~spdg~~l~~ 594 (730)
+++|+|++++|++++.| +.|++||+++++. +. ...+ |. ..|.+++|+|++++|++
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----IG-SLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCS 308 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----EE-EECBC--------CCBSBS---SCEEEEEECSSSSEEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----cc-eeccCcccccccccccccC---CcEEEEEECCCCCEEEE
Confidence 99999999999999999 9999999998543 22 2233 55 68999999999999999
Q ss_pred -EecCcEEEEeCCCCceeeeecCC----CC---------------CCCeEEEEEecCC----------CEEEEEEcCCeE
Q 004789 595 -IHEGQIDVYEAPTLNHTSQLVPD----KM---------------DLPITYATYSCDG----------KCIYVSCKSGHV 644 (730)
Q Consensus 595 -s~dg~I~iwd~~~~~~~~~~~~~----~h---------------~~~v~~~~~spdg----------~~l~sgs~dg~I 644 (730)
+.||.|++||+++++.+..+... .| ...|.+++|+|+| ++|++|+.||.|
T Consensus 309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 48999999999999998888621 24 8899999999998 799999999999
Q ss_pred EEEECCCce
Q 004789 645 KVFDTSTLE 653 (730)
Q Consensus 645 ~iwd~~~~~ 653 (730)
++|++.+|+
T Consensus 389 ~iw~~~~g~ 397 (397)
T 1sq9_A 389 RWFREAGGK 397 (397)
T ss_dssp EEEEEEC--
T ss_pred EEEEcCCCC
Confidence 999998763
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.6e-31 Score=274.22 Aligned_cols=273 Identities=16% Similarity=0.209 Sum_probs=224.0
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcce-eeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~-~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
.++|+++ .||+| .|++|+|||+. ++++ ..+.+ ++|...|++++|+|+|++|++|+.||+|++|++++++.
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~----tg~~~~~~~~--~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~- 101 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSAS----SGDILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 101 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETT----TCCEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred EEECCCC-EEEEE-eCCEEEEEECC----CCCEEEEEEe--cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-
Confidence 4578876 67766 58999999996 3333 33333 45899999999999999999999999999999877654
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCc-eEEEEEcCCCCCeEEEEEc
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILL 494 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~-~~~~~~~~~~~~v~~i~~s 494 (730)
+.... +|...+.++.+.+..+++++ ++.+.+|+..++ ..+..+.+|...+.++.++
T Consensus 102 --------------------~~~~~--~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 102 --------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp --------------------EEEEE--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred --------------------EEEec--CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 11111 68888888877799999999 999999999875 5667788999999999999
Q ss_pred CCC-eEEEEECCCcEEEEecCCCce----EEEEcCCCCCeEEEEEeCCCCEE---EEEeCCCcEEEEEcCCCceecceee
Q 004789 495 PQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVL---VSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 495 pdg-~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~V~~l~~spd~~~l---~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
+++ .+++++.|+.|++||+++++. ......+.+.|.+++++|++..+ ++++.++.|++||.......
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----- 234 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----- 234 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----
Confidence 999 999999999999999988753 35556688999999999976533 45677899999999885322
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEE-E--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 643 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~-s--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~ 643 (730)
. . ..+. ..+..++|+|++..+++ + .|+.|++||+++++++..+. +|...|++++|+|||++|++|+.||+
T Consensus 235 ~-~-~~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 235 S-A-VDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp E-E-EECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred c-c-ccce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 1 1 1222 57999999999998887 3 68999999999999999886 47999999999999999999999999
Q ss_pred EEEEECCCce
Q 004789 644 VKVFDTSTLE 653 (730)
Q Consensus 644 I~iwd~~~~~ 653 (730)
|+|||+....
T Consensus 308 v~iWd~~~~d 317 (318)
T 4ggc_A 308 LRLWRCFELD 317 (318)
T ss_dssp EEEECCSCCC
T ss_pred EEEEECCCCC
Confidence 9999987643
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-32 Score=285.66 Aligned_cols=256 Identities=11% Similarity=0.111 Sum_probs=204.0
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCC
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 515 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~ 515 (730)
+|...|.+++|+ |++|++|+ |++|++||+.++. .+..+.+|...|.+++|+|+ + .|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 699999999999 99999999 9999999998875 56788999999999999863 7 999999999999999998
Q ss_pred C--ceEEEEcCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---
Q 004789 516 K--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 588 (730)
Q Consensus 516 ~--~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd--- 588 (730)
+ .....+.+|...|++++|+|+ +.+|++|+.|+.|++||++.+.. ........+|. ..|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP 164 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence 7 466778899999999999998 78999999999999999987421 11122456676 68999999997
Q ss_pred --------------CcEEEE-EecCcEEEEeCCCC---ceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEE
Q 004789 589 --------------QIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV 646 (730)
Q Consensus 589 --------------g~~l~~-s~dg~I~iwd~~~~---~~~~~~~~~~h~~~v~~~~~spdg----~~l~sgs~dg~I~i 646 (730)
+++|++ +.|+.|++||++.. +.+..+. +|...|.+++|+|++ .+|++|+.||+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 367887 58999999999755 3444454 578999999999986 89999999999999
Q ss_pred EECCCce----EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCCCCCcc
Q 004789 647 FDTSTLE----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSRE 719 (730)
Q Consensus 647 wd~~~~~----~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~~~~~~ 719 (730)
|++.+.. ....+. +| ...|+ +++|+| ++++||+|+.||+|++|+.... ..|........+.
T Consensus 243 w~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~~~~~~~~~~ 307 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVD-GQWVCISDVNKGQ 307 (316)
T ss_dssp EECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTT-SCEEEEEECC---
T ss_pred EEccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCC-CcEEEeeeccCCC
Confidence 9987631 111222 33 55688 999999 8999999999999999998643 3455443333333
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-32 Score=293.94 Aligned_cols=294 Identities=11% Similarity=0.073 Sum_probs=223.9
Q ss_pred CCcccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCC
Q 004789 334 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 413 (730)
Q Consensus 334 ~~~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~ 413 (730)
+..+.++||||+.+|+++.|++|+ |... . + .+ .||...|++++|+|+| .++.+.+|+.+..
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~---~-~--~l----~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKY---A-K--DI----NCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECC---C-S--CC----SSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccc---c-c--ee----cCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 345578999999999999999999 6431 1 1 11 2599999999999999 4555555543322
Q ss_pred ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCC----
Q 004789 414 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP---- 486 (730)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~---- 486 (730)
.. . .-.|...|.+++|+ |.+||+++ ||.|++||.++ ++..+. |..
T Consensus 78 ~~---------------------~----~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 78 GL---------------------L----NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp CS---------------------S----TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred eE---------------------e----ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 21 0 00368899999999 99999999 99999999654 666677 665
Q ss_pred -CeEEEEEcCCC-eEEEEECCCcEEEEecCCCc-------eEEEE----cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 004789 487 -IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------TKAKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVW 553 (730)
Q Consensus 487 -~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~-------~~~~~----~~h~~~V~~l~~spd~~~l~s~s~dg~I~vw 553 (730)
.|.+++||||| .|++|+.||+|++||+.++. .+.++ .+|...|.+++|+||| +++++.|++|++|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlW 207 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSM 207 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEE
Confidence 59999999999 99999999999999999885 36776 6688899999999999 8888999999999
Q ss_pred EcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE--ecC
Q 004789 554 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCD 631 (730)
Q Consensus 554 d~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~--spd 631 (730)
|+.++... ...+++..+|. ..|.+++|+ |+.++++.+++|++||+.+++...... +|...+..++| +||
T Consensus 208 d~~~~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 208 TVSASSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKE 278 (588)
T ss_dssp CCCSSSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSS
T ss_pred ECCCCccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCC
Confidence 99885421 01121224565 689999999 688998778999999998776633332 47999999999 999
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEeeccc------------ccCCCC------cccceeeEEEEEecCCCCEEEEEeC
Q 004789 632 GKCIYVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPGT------ISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 632 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~------------~~~~gh------~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
+..|+++++||+ ++|..+.- . +.+.. +...|. +...|+ +++|+| +|+.+|+++.
T Consensus 279 ~~~La~a~edG~-klw~~d~~---~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~--~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLEDEL---H-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIH--GISLSP-DGYSIAIVYD 350 (588)
T ss_dssp CEEEEECSSCEE-EEEESSSE---E-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEE--EEEECT-TSSEEEEEEE
T ss_pred CCEEEEEcCCCC-EEEeeccE---E-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEE--EEEECC-CCCEEEEEEe
Confidence 999999999999 99998631 1 21110 000010 022355 999999 8999999873
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5e-32 Score=284.83 Aligned_cols=243 Identities=15% Similarity=0.176 Sum_probs=198.6
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ..+..+ .+|...|.+++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------~~~~~l--~gH~~~V~~v~~~~~~ 69 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------ILIADL--RGHEGPVWQVAWAHPM 69 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------EEEEEE--ECCSSCEEEEEECCGG
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------EEEEEE--cCCCccEEEEEeCCCC
Confidence 5999999999999999999999999999999865532 011111 1799999999996
Q ss_pred -CcEEEEee-CCEEEEEEcCCc--eEEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCCCce---EEEEcCC
Q 004789 456 -GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAKLKGH 525 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~--~~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~~~~---~~~~~~h 525 (730)
+++|++|+ |++|++||++++ .....+.+|...|.+++|+|+ + .|++|+.|+.|++||++.+.. ...+.+|
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 68999999 999999999987 467778899999999999998 7 999999999999999987632 3455679
Q ss_pred CCCeEEEEEeCC-----------------CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC
Q 004789 526 QNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 588 (730)
Q Consensus 526 ~~~V~~l~~spd-----------------~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd 588 (730)
...|.+++|+|+ +++|++|+.|++|++||++.... ...+. ...+|. ..|.+++|+|+
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~~sp~ 223 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVAWAPS 223 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEECCCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEEecCC
Confidence 999999999997 46899999999999999975321 12233 456787 79999999998
Q ss_pred C----cEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 589 Q----IHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 589 g----~~l~~-s~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+ .+|++ +.|++|++||+.+.. ....+. .|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 6 78888 589999999987631 112232 358899999999999999999999999999975
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.5e-31 Score=280.58 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=226.2
Q ss_pred CCCCcEEEEEEecC---CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe
Q 004789 379 SFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 455 (730)
Q Consensus 379 gh~~~V~~v~fspd---g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s 455 (730)
+|.+.|++++|+|+ |++|++|+.||.|++||+.+.... ...... +|...|.+++|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~ 95 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------IPKAQQ--MHTGPVLDVCWS 95 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------EEEEEE--ECSSCEEEEEEC
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------eEEEec--cccCCEEEEEEC
Confidence 59999999999999 699999999999999998763220 101111 599999999999
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEE--cCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCe
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 529 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~--spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 529 (730)
+++|++++ ||.|++||+.+++.+. +..|...|.+++| +|++ .|++|+.|+.|++||+++++.+..+..+. .+
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 88999999 9999999999998776 4569999999999 8999 99999999999999999999998888664 67
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE----EEE-EecCcEEEEe
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQIDVYE 604 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~----l~~-s~dg~I~iwd 604 (730)
.++.+.+ ..+++++.++.+.+||++..... .......+. ..+.++++.++... +++ +.||.|++||
T Consensus 174 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 174 YCADVIY--PMAVVATAERGLIVYQLENQPSE----FRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEEEET--TEEEEEEGGGCEEEEECSSSCEE----EEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred eEEEecC--CeeEEEeCCCcEEEEEeccccch----hhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 7777764 47888999999999999875321 121222222 45677777766543 666 5899999999
Q ss_pred CCCC---ceeeeecCCCCCC------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc
Q 004789 605 APTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 605 ~~~~---~~~~~~~~~~h~~------------~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
++.. ..+..+.. |.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 245 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~- 314 (368)
T 3mmy_A 245 INPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-------QL- 314 (368)
T ss_dssp SSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CC-
T ss_pred cCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-------CC-
Confidence 9877 44555543 233 79999999999999999999999999999999888876 55
Q ss_pred ccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 670 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 670 ~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
...|. +++|+| ++.+|++|+.|+..+.|++..
T Consensus 315 ~~~v~--~~~~s~-~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 DQPIS--ACCFNH-NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SSCEE--EEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred CCCce--EEEECC-CCCeEEEEecccccccccccC
Confidence 55688 999999 899999999998666555443
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.5e-31 Score=287.15 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=229.4
Q ss_pred CCCCCCCeeE-eecCCCcEEEEeecCCCCC-cceeeeecCCCCCCCcEEEEEEec-CCCEEEEEeCCCcEEEeecCCCcc
Q 004789 339 TSLPDADSAV-CAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 339 ~~spdg~~la-t~~~dg~i~lWd~~~~~~~-~~~~~~~l~~~gh~~~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
..+|+...++ +++.||.|++|++...... ..... + .+|.+.|++++|+| ++++|++|+.||.|++||+.++..
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~--~--~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL--V--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCC--B--CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCce--E--ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4566665444 5788999999998632111 11111 1 35999999999999 999999999999999999987643
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C-cEEEEee-CCEEEEEEcCCceEEEEE--cCCCCCeE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIAT 489 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~-~~l~s~s-dg~I~vwd~~t~~~~~~~--~~~~~~v~ 489 (730)
... . ...+... .+|...|.+++|+ + .+|++++ ||.|++||+.+++.+..+ ..|...|.
T Consensus 117 ~~~------------~--~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 117 VLP------------L--REPVITL--EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp SSC------------B--CSCSEEE--ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred ccc------------c--CCceEEe--cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence 110 0 0011111 1699999999999 5 6899999 999999999999999999 88999999
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE-cCCCCC-eEEEEEeCCCCEEEEE---eCCCcEEEEEcCCCceecc
Q 004789 490 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 490 ~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~-V~~l~~spd~~~l~s~---s~dg~I~vwd~~~~~~~~~ 563 (730)
+++|+|++ .|++++.|+.|++||+++++.+..+ .+|.+. +.+++|+|++++|++| +.|+.|++||++++..
T Consensus 181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--- 257 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--- 257 (402)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS---
T ss_pred EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC---
Confidence 99999999 9999999999999999999999988 778776 8999999999999999 7899999999988542
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
++......+. ..+.+++|+|+++++++ + .||.|++||+.+++. +..+....|...+.+++|+|++.++++ .
T Consensus 258 -~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 258 -PLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp -CSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred -CceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 1221222344 57999999999999976 5 699999999998874 445544345789999999999998875 5
Q ss_pred CCeEEEEECCCceEE
Q 004789 641 SGHVKVFDTSTLELR 655 (730)
Q Consensus 641 dg~I~iwd~~~~~~~ 655 (730)
++.+++|++.++...
T Consensus 332 ~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 332 CEIARFYKLHERKCE 346 (402)
T ss_dssp TEEEEEEEEETTEEE
T ss_pred ceeEEEEEcCCCcEE
Confidence 679999999987643
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=279.54 Aligned_cols=249 Identities=14% Similarity=0.171 Sum_probs=209.0
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|.+.|++++|+|+|++|++|+.||.|++|++..... ....... +|...|.+++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~--~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTLT--GHEGPVWRVDWAHPK 67 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------EEEEEEC--CCSSCEEEEEECCGG
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------eeeeEec--CCCCcEEEEEeCCCC
Confidence 4999999999999999999999999999999863321 1111111 699999999997
Q ss_pred -CcEEEEee-CCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCCC--ceEEEEcCCC
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQ 526 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~ 526 (730)
+++|++++ ||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++++.|+.|++||+.++ .....+.+|.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 68999999 9999999999987 77888899999999999999 8 9999999999999999987 3445667899
Q ss_pred CCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---Cc
Q 004789 527 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 590 (730)
Q Consensus 527 ~~V~~l~~sp-------------d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd---g~ 590 (730)
..|.+++|+| ++.++++++.||.|++||++++.... ..+. ...+|. ..|.+++|+|+ ++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCCCCCC
Confidence 9999999999 69999999999999999998754221 1222 455676 78999999999 89
Q ss_pred EEEE-EecCcEEEEeCCCCc---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 591 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 591 ~l~~-s~dg~I~iwd~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
+|++ +.||.|++||++++. ....+....|...|.+++|+|+|++|++++.||.|++|++..+.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9998 589999999998764 22333333468899999999999999999999999999998543
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.6e-30 Score=271.90 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=208.6
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCc----eEEEEEcCCCCCeEEEEEcC--CC-eEEEEECCCcEEEEec
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCP 513 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~----~~~~~~~~~~~~v~~i~~sp--dg-~l~sgs~dg~I~iwd~ 513 (730)
+|...|.+++|+ +++|++|+ ||.|++||+.++ +....+.+|...|++++|+| ++ .|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 799999999999 88999999 999999999876 57778889999999999999 58 9999999999999999
Q ss_pred CCC---------ceEEEEcCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceee-------cccccCCCC
Q 004789 514 CTK---------KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFL-------HSFQTGLVP 575 (730)
Q Consensus 514 ~~~---------~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i-------~~~~~~h~~ 575 (730)
.++ +.+..+.+|...|.+++|+|+ +.++++++.||.|++||+++++....... .....+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL- 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc-
Confidence 987 567888899999999999999 99999999999999999988654322111 10122444
Q ss_pred CCCCeEEEEEecC---CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEEE
Q 004789 576 ETTIVNHIQFHPD---QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVF 647 (730)
Q Consensus 576 ~~~~v~~l~~spd---g~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg----~~l~sgs~dg~I~iw 647 (730)
..+.+++|+|+ +..++++ .++.+.+|+...++.........|...|.+++|+|++ ++|++|+.||.|++|
T Consensus 168 --~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 168 --QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp --CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred --cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 68999999997 8888884 7888888887777653333334579999999999998 899999999999999
Q ss_pred ECCCc----------------------------------------------eEEEEeecccccCCCCcccceeeEEEEEe
Q 004789 648 DTSTL----------------------------------------------ELRCQINLTAYAQPGTISLELYPLVIAAH 681 (730)
Q Consensus 648 d~~~~----------------------------------------------~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 681 (730)
|+.++ +.+..+. +| ...|+ +++|+
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~s 315 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DH-NGEVW--SVSWN 315 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEEC-------TT-SSCEE--EEEEC
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------cc-cccEE--EEEEc
Confidence 99875 2233332 55 55688 99999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 682 PLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 682 p~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
| ++++|++|+.||.|++|++.+++.
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred C-CCCEEEEecCCCcEEEEecCcCcc
Confidence 9 899999999999999999998754
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.7e-30 Score=286.16 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=219.5
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCC-----Ccce-eeeecCCCCCC------------CcEEEEEEecCC--CEEE
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINE-----PSEC-RTLLLPDNSFG------------GRVVRLIYSHSG--DFLV 397 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~-----~~~~-~~~~l~~~gh~------------~~V~~v~fspdg--~~L~ 397 (730)
..++|||++||+|+.||.|+||++..... .... ....+ .+|. +.|.+++|+|++ .+|+
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF--QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE--ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc--ccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 58999999999999999999999975321 0111 11122 2487 889999999998 7999
Q ss_pred EEeCCCcEEEeecCCCccccc----cc------------cccc---eeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 398 ALTQTATHKLWKWQSNKQSLE----EE------------NVNM---ESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 398 s~s~dg~I~iWd~~~~~~~~~----~~------------~~~~---~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+++.|++|++||+..+..... .. ...+ .+.-+.... .... .+..+|...|.+++|+ +
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRR-IFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEE-EECSCCSSCCCEEEECTTS
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceE-EeccCCCcceEEEEEcCCC
Confidence 999999999999976543111 00 0000 000000000 0011 1123699999999999 8
Q ss_pred cEEEEeeCCEEEEEEcCC-ceEEEE-------EcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCce----EEEE
Q 004789 457 SHLFSASGGKISIFSLET-FQTLAT-------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----KAKL 522 (730)
Q Consensus 457 ~~l~s~sdg~I~vwd~~t-~~~~~~-------~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~----~~~~ 522 (730)
++|++|.|+.|++||+.+ ++.... +.+|...|++++|+|++ .|++|+.||.|++||+++++. +..+
T Consensus 190 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (447)
T 3dw8_B 190 ETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF 269 (447)
T ss_dssp SEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred CEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence 899998899999999984 444442 55899999999999997 999999999999999999886 7888
Q ss_pred cCCCC------------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CceecceeecccccCCCCCCC-----------
Q 004789 523 KGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT----------- 578 (730)
Q Consensus 523 ~~h~~------------~V~~l~~spd~~~l~s~s~dg~I~vwd~~~-~~~~~~~~i~~~~~~h~~~~~----------- 578 (730)
.+|.. .|.+++|+|++++|++++. +.|++||+++ ++. +. ...+|.....
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~-----~~-~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 270 EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP-----VE-TYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-----SC-CEESCGGGTTTHHHHHHTSGG
T ss_pred ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-----cc-eeecccccccccccccccccc
Confidence 88876 8999999999999999998 9999999986 432 22 2233320000
Q ss_pred -CeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec------------------------------CCCCCCCeEEE
Q 004789 579 -IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV------------------------------PDKMDLPITYA 626 (730)
Q Consensus 579 -~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~------------------------------~~~h~~~v~~~ 626 (730)
.+..++|+|++++|+++ .||.|++||+.+++.+.... ...+...|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 13349999999999985 89999999999887653111 00235678999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECC
Q 004789 627 TYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 627 ~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+|+|++.+|++++.++ +++|..+
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998765 7888643
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2e-30 Score=285.29 Aligned_cols=267 Identities=18% Similarity=0.265 Sum_probs=219.3
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccc
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 419 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~ 419 (730)
..+|++.+++|+.||+|++||+.. +++... + .+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd~~~----~~~~~~-~--~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---- 205 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWDKNT----LECKRI-L--TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM---- 205 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEESSS----CCEEEE-E--CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE----
T ss_pred EEECCCEEEEEeCCCeEEEEeCCC----CeEEEE-E--cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE----
Confidence 456899999999999999999863 233222 2 259999999999 788999999999999999877654
Q ss_pred ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEE---EEEcCCCCCeEEEEEcC
Q 004789 420 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILLP 495 (730)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~---~~~~~~~~~v~~i~~sp 495 (730)
+.... +|...|.+++|+++++++|+ ||.|++||+.++... ..+.+|...|.+++|
T Consensus 206 -----------------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 206 -----------------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp -----------------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred -----------------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 11111 68999999999987999999 999999999987655 677899999999999
Q ss_pred CC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
++ .+++|+.||.|++||+++++.+..+.+|...|.+++|+ ++++++|+.||.|++||+++++ .+. ...+|.
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~-----~~~-~~~~h~ 336 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-----CLR-VLEGHE 336 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-----EEE-EECCCS
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC-----EEE-EEeCCc
Confidence 56 99999999999999999999999999999999999995 6799999999999999999853 333 345676
Q ss_pred CCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc---------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 575 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 575 ~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~---------~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
..|.+++| ++.++++ +.||.|++||+.++. .+..+. .|...|.+++| ++.+|++|+.||.|
T Consensus 337 ---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 337 ---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp ---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred ---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 68999999 7888888 589999999997665 666664 46889999999 78899999999999
Q ss_pred EEEECCCceEEEE
Q 004789 645 KVFDTSTLELRCQ 657 (730)
Q Consensus 645 ~iwd~~~~~~~~~ 657 (730)
++||+.+......
T Consensus 408 ~iwd~~~~~~~~~ 420 (435)
T 1p22_A 408 LIWDFLNDPAAQA 420 (435)
T ss_dssp EEEC---------
T ss_pred EEEECCCCCCccc
Confidence 9999988765443
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.7e-30 Score=271.80 Aligned_cols=252 Identities=13% Similarity=0.145 Sum_probs=209.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|.+.|++++|+|+|++|++|+.||.|++||+.++.... ....... +|...|.+++|+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~~--~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-----------------ELSDSWR--AHDSSIVAIDWASPE 69 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-----------------EEEEEEE--CCSSCEEEEEECCGG
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-----------------eecceec--cCCCcEEEEEEcCCC
Confidence 599999999999999999999999999999987654310 1111111 699999999998
Q ss_pred -CcEEEEee-CCEEEEEEcCCc---------eEEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCCCceEEE
Q 004789 456 -GSHLFSAS-GGKISIFSLETF---------QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAK 521 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~---------~~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~~~~~~~ 521 (730)
+++|++++ ||.|++||+.++ +.+..+..|...|.+++|+|+ + .+++++.||.|++||+++++.+..
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 57899999 999999999887 668888899999999999999 8 999999999999999998865433
Q ss_pred Ec-------------CCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEE
Q 004789 522 LK-------------GHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 585 (730)
Q Consensus 522 ~~-------------~h~~~V~~l~~spd---~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~ 585 (730)
+. .|...+.+++|+|+ +..+++++.|+.+.+|+...+.. ..+. ...+|. ..|++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~h~---~~i~~~~~ 222 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAA-KLPGHK---SLIRSISW 222 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEE-ECCCCC---SCEEEEEE
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeee-ecCCCC---cceeEEEE
Confidence 32 57889999999997 89999999999998888877532 1233 345676 79999999
Q ss_pred ecCC----cEEEE-EecCcEEEEeCCCC----------------------------------------------ceeeee
Q 004789 586 HPDQ----IHLLS-IHEGQIDVYEAPTL----------------------------------------------NHTSQL 614 (730)
Q Consensus 586 spdg----~~l~~-s~dg~I~iwd~~~~----------------------------------------------~~~~~~ 614 (730)
+|++ ++|++ +.||.|++||++++ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 78888 58999999999764 344444
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
. +|...|++++|+|++++|++|+.||.|++|++.+++....+
T Consensus 303 ~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 303 D--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp C--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred e--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 3 46889999999999999999999999999999988655544
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=1.3e-29 Score=290.74 Aligned_cols=287 Identities=13% Similarity=0.122 Sum_probs=240.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCC----ccccccccccceeeEecCCCCeeEeecccCCCCCC-eeEEE
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN----KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFA 453 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~-V~~l~ 453 (730)
.|.+.|.+++|+|+|++|++++ ++.|++|++.++ +. ...+ .+|... |.+++
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~---------------------~~~~--~~h~~~~v~~~~ 71 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP---------------------VVQF--TGHGSSVVTTVK 71 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS---------------------EEEE--CTTTTSCEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcccc---------------------ceEE--ecCCCceEEEEE
Confidence 4899999999999999999988 789999998765 22 1111 169999 99999
Q ss_pred Ee----CcEEEEee-CCEEEEEEcCCc--------eEEEEEcCCCCCeEEEEEcCCC-eEEEEECC----CcEEEEecCC
Q 004789 454 LR----GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCT 515 (730)
Q Consensus 454 ~s----~~~l~s~s-dg~I~vwd~~t~--------~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d----g~I~iwd~~~ 515 (730)
|+ +++|++++ ||.|++||+.++ .....+..|...|.+++|+|++ .+++++.+ +.|++|| .
T Consensus 72 ~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 72 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T
T ss_pred ECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C
Confidence 98 57899999 999999999855 7778888999999999999999 99999987 6888888 6
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCC---CeEEEEEecC-Cc
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT---IVNHIQFHPD-QI 590 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~---~v~~l~~spd-g~ 590 (730)
++.+..+.+|...|.+++|+|++. .+++++.|+.|++||+.+++ .+. ...+|. . .|.+++|+|+ ++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~-~~~~~~---~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSA-SDRTHH---KQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEE-EECSSS---CTTCCEEEEEECSTTCC
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eee-eecccC---CCCceEEEEEECCCCCC
Confidence 778889999999999999999997 89999999999999998853 233 344565 5 7999999999 99
Q ss_pred EEEE-EecCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCC
Q 004789 591 HLLS-IHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 667 (730)
Q Consensus 591 ~l~~-s~dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g 667 (730)
++++ +.|+.|++||+.+++.+..+... .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+.... .
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~ 295 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----Q 295 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----T
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----C
Confidence 9998 58999999999999988877321 468999999999 99999999999999999999999888876321 0
Q ss_pred CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004789 668 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 709 (730)
Q Consensus 668 h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w 709 (730)
.....+. ++.|. ++.++++++.||.|++||+.+++...
T Consensus 296 ~~~~~~~--~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 296 QLGNQQV--GVVAT--GNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp CGGGCEE--EEEEE--ETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred cccCcee--EEEeC--CCCeEEEEECCCCEEEEECCCCcEEE
Confidence 0123344 77774 58899999999999999998866543
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.4e-30 Score=283.21 Aligned_cols=287 Identities=11% Similarity=0.041 Sum_probs=229.3
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---CcE
Q 004789 383 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH 458 (730)
Q Consensus 383 ~V~~v~fspdg~~L~-s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s---~~~ 458 (730)
....++++|+...++ +++.||.|+||++........ ... ...+|...|.+++|+ +++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-----------------~~~--~~~~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-----------------NVP--LVCGHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-----------------TCC--CBCCCSSCEEEEEECTTCTTE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-----------------CCc--eEecCCCCEEEEEeCCCCCCE
Confidence 344588898876444 578899999999865432000 000 112699999999998 789
Q ss_pred EEEee-CCEEEEEEcCCc-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEE--cCCC
Q 004789 459 LFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGHQ 526 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~-------~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~--~~h~ 526 (730)
|++|+ ||.|++||+.++ +.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+ .+|.
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 176 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence 99999 999999999988 6678899999999999999997 8999999999999999999999999 7899
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE----ecCcEEE
Q 004789 527 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDV 602 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s----~dg~I~i 602 (730)
..|.+++|+|++++|++++.||.|++||+++++ .+..+..+|.. ..+.+++|+|++++++++ .|+.|++
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999854 33322245552 348999999999999987 6899999
Q ss_pred EeCCCCce-eeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEEECCCceE-EEEeecccccCCCCcccceeeEEEE
Q 004789 603 YEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIA 679 (730)
Q Consensus 603 wd~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~ 679 (730)
||+++++. +.... ..+...+.+++|+|++++|++ |+.||.|++||+.+++. +..+... .| ...|. +++
T Consensus 250 wd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-----~~-~~~v~--~~~ 320 (402)
T 2aq5_A 250 WDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-----SS-KESQR--GMG 320 (402)
T ss_dssp EETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-----CC-SSCCS--EEE
T ss_pred EcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-----cc-CCccc--ceE
Confidence 99988665 33332 245788999999999999975 55799999999999874 4444321 11 45678 999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCce
Q 004789 680 AHPLEPNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 680 ~sp~~~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
|+| ++.++++ .|+.+++|++.++..
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred Eec-cccccee--cceeEEEEEcCCCcE
Confidence 999 7877764 567999999988754
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.1e-29 Score=275.06 Aligned_cols=307 Identities=14% Similarity=0.079 Sum_probs=239.5
Q ss_pred eecCCCcEEEEeecCCCCC-cceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceee
Q 004789 349 CAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 427 (730)
Q Consensus 349 t~~~dg~i~lWd~~~~~~~-~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~ 427 (730)
+++.++.+++|.++..... .....+. +...+.+++|+|++.++++++.++.|++||+.+++....
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~--------- 159 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFK-----TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL--------- 159 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEE-----CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE---------
T ss_pred cccCCCceEEEEECCCCCcceEEEEEc-----CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee---------
Confidence 4556676666666432111 1222332 345567999999777777777889999999887654110
Q ss_pred EecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eE-EEE
Q 004789 428 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFG 502 (730)
Q Consensus 428 i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l-~sg 502 (730)
...+ ...+|...|.+++|+ +.++++++ |+.|++||+.+++.+..+..|...+.+++|+|++ .+ +++
T Consensus 160 ---~~~~------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 160 ---SPPE------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp ---CCCH------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred ---cCcc------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 0000 011588899999998 77888888 8999999999999999999999999999999999 66 455
Q ss_pred ECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe--------CCCcEEEEEcCCCceecceeecccccCCC
Q 004789 503 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 503 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s--------~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
+.|+.|++||+++++.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+.+++..... .+.
T Consensus 231 ~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------~~~ 302 (433)
T 3bws_A 231 WISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------GPP 302 (433)
T ss_dssp TTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-------EEE
T ss_pred cCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-------cCC
Confidence 58999999999999988888754 4599999999999999887 5889999999986432211 122
Q ss_pred CCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------------
Q 004789 575 PETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------------ 640 (730)
Q Consensus 575 ~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~------------ 640 (730)
..+.+++|+|+++.+++ + .++.|++||+.+++.+..+. +...+.+++|+|+|++|++++.
T Consensus 303 ---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 303 ---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp ---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred ---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 46889999999987765 4 78999999999998887774 3678999999999999998887
Q ss_pred ---CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC-CCcEEEEeCCC
Q 004789 641 ---SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 704 (730)
Q Consensus 641 ---dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~-Dg~I~iWd~~~ 704 (730)
||.|++||+.+++.+..+. + ...+. +++|+| ++++|++++. |+.|++|++..
T Consensus 377 g~~dg~v~~~d~~~~~~~~~~~-------~--~~~~~--~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVKEFWE-------A--GNQPT--GLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CSSCCEEEEEETTTTEEEEEEE-------C--SSSEE--EEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred cccceEEEEEECCCCcEEEEec-------C--CCCCc--eEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 5799999999999888775 2 22366 999999 8899888775 99999999863
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-30 Score=274.89 Aligned_cols=244 Identities=12% Similarity=0.085 Sum_probs=207.6
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcC--CceEEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCC
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 515 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~--t~~~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~ 515 (730)
+|...|.+++|+ +++|++|+ ||.|++||+. +++.+..+.+|...|++++|+++ + +|++|+.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 699999999999 88999999 9999999998 67788889999999999999987 7 999999999999999999
Q ss_pred Cc--eEEEEcCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec----
Q 004789 516 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 587 (730)
Q Consensus 516 ~~--~~~~~~~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp---- 587 (730)
++ .+..+..|...|.+++|+|+ +.++++++.|+.|++||+++...... . ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~-~~~~~~---~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---I-IIDAHA---IGVNSASWAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---E-EEECCT---TCEEEEEECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---E-EecCCC---CceEEEEEcCcccc
Confidence 87 77788889999999999999 99999999999999999998532211 1 234565 6899999999
Q ss_pred ---------CCcEEEE-EecCcEEEEeCCCCce----eeeecCCCCCCCeEEEEEecC---CCEEEEEEcCCeEEEEECC
Q 004789 588 ---------DQIHLLS-IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 588 ---------dg~~l~~-s~dg~I~iwd~~~~~~----~~~~~~~~h~~~v~~~~~spd---g~~l~sgs~dg~I~iwd~~ 650 (730)
++.++++ +.|+.|++||++++.. ...+. .|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 6899998 4899999999987653 33443 57899999999999 8999999999999999999
Q ss_pred CceE---EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 651 TLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 651 ~~~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
++.. ...+.. .+| ...|. +++|+| ++++|++++.||.|++|++..+
T Consensus 240 ~~~~~~~~~~~~~-----~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKE-----EKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSS-----SCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeeecc-----ccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence 8742 222221 123 55677 999999 8999999999999999999854
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.8e-30 Score=271.63 Aligned_cols=275 Identities=12% Similarity=0.030 Sum_probs=222.7
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCC-EEEEEeCCCcEEEeec-CCCcc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW-QSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~-~~~~~ 415 (730)
..++||+++|++++.||.|++|++...........+. +|...|.+++|+|+++ +|++|+.||.|++||+ .++..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 92 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence 5789999999999999999999997432111133322 4999999999999999 9999999999999998 66543
Q ss_pred ccccccccceeeEecCCCCeeEeecccCC--CCCCeeEEEEe-CcEEEEee-CCEEEEEEcCC---------ceEEEEEc
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---------FQTLATFA 482 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t---------~~~~~~~~ 482 (730)
.. . .+ |...|.+++|+ +++|++++ |+.|++||+.+ ++++..+.
T Consensus 93 -----------~~-----------~--~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 93 -----------QA-----------L--TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp -----------EE-----------C--BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred -----------Ee-----------c--cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 00 1 15 89999999999 99999999 99999999987 77666666
Q ss_pred CCCCCeEEEEEcCCCeEEEEECCCcEEEEecCC-Cc--eEEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 004789 483 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGW 558 (730)
Q Consensus 483 ~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~ 558 (730)
|...|.+++|+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++++.||.|++||++..
T Consensus 149 -~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 88999999999986 99999999999999998 54 3344556889999999999 9999999999999999999874
Q ss_pred --ceecceeecccccCCCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEE
Q 004789 559 --KKLCSKFLHSFQTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATY 628 (730)
Q Consensus 559 --~~~~~~~i~~~~~~h~~------~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h-~~~v~~~~~ 628 (730)
... ..... ...+|.. ....|.+++|+|++++|++ +.||.|++||+.+++.+..+.. | ...|.+++
T Consensus 227 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~- 301 (342)
T 1yfq_A 227 GDDYN-SSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDSVVKIA- 301 (342)
T ss_dssp CCSTT-CTTCE-EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--CSSSEEEEEE-
T ss_pred Ccccc-cccce-eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc--ccCCCceEec-
Confidence 100 01111 2233320 0148999999999999998 4899999999999999888754 4 88999999
Q ss_pred ecCCCEEEEEEcCCe-EEEEE
Q 004789 629 SCDGKCIYVSCKSGH-VKVFD 648 (730)
Q Consensus 629 spdg~~l~sgs~dg~-I~iwd 648 (730)
|++++|++|+.||. .+.|.
T Consensus 302 -~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 302 -CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -ECSSEEEEEEECTHHHHCSS
T ss_pred -CCCCeEEEEecCCccccccc
Confidence 99999999999998 55444
No 107
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-31 Score=296.86 Aligned_cols=277 Identities=12% Similarity=0.053 Sum_probs=206.4
Q ss_pred cCCCCC------CCeeEeecCCCcEEEEeecCCCCCc-cee-----eeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcE
Q 004789 338 STSLPD------ADSAVCAKSLEKSVNLKLQLINEPS-ECR-----TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 405 (730)
Q Consensus 338 ~~~spd------g~~lat~~~dg~i~lWd~~~~~~~~-~~~-----~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I 405 (730)
..++|+ +.+||+++.||+|++||+....... ... ...+ .+|...|++++|+|++ .|++|+.||+|
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~lasgs~DgtV 289 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-TVVCGFKNGFV 289 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-EEEEEETTSEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-eEEEEeCCCEE
Confidence 456665 7899999999999999997432110 000 1122 3599999999999875 79999999999
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEE--EEe--C-cEEEEee-CCEEEEEEcCCceEEE
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQTLA 479 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l--~~s--~-~~l~s~s-dg~I~vwd~~t~~~~~ 479 (730)
++||+.++.... ... .+|...|.++ +|+ + .+|++|+ |++|++||++++++..
T Consensus 290 ~lWD~~~~~~~~-----------------~~~-----~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~ 347 (524)
T 2j04_B 290 AEFDLTDPEVPS-----------------FYD-----QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347 (524)
T ss_dssp EEEETTBCSSCS-----------------EEE-----ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred EEEECCCCCCce-----------------EEe-----ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence 999987653200 011 1699999999 456 5 7899999 9999999999988777
Q ss_pred EEcCCCC--CeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 004789 480 TFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 556 (730)
Q Consensus 480 ~~~~~~~--~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~ 556 (730)
.+.+|.. .|.+++|+|++ .+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 7766653 57899999999 99999999999999999999888899999999999999999999999999999999987
Q ss_pred CCceecceeeccccc---CCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC-CCceeeeecCCCCCCCeEEEEEecCC
Q 004789 557 GWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 557 ~~~~~~~~~i~~~~~---~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
.+ .+..... .+.. ..|.+++|+|++..+.... .+.+|+.. ++..+..+. +|...|.+++|+|++
T Consensus 428 ~~------~~~~~~~~~~~~~~--~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 428 RR------LLHGIKNSSATQKS--LRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWNETS 495 (524)
T ss_dssp SS------TTTCC------CCC--CEEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCST
T ss_pred Hh------hccccccCccceee--eEEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECCCCC
Confidence 62 1220000 1110 2578999999998553322 23344332 455665664 468999999999995
Q ss_pred ---CEEEEEEcCCeEEEEECCC
Q 004789 633 ---KCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 633 ---~~l~sgs~dg~I~iwd~~~ 651 (730)
.++++|+.||.|+||++..
T Consensus 496 ~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp TTTTEEEEECTTSEEEEEECSC
T ss_pred CccHHHHhhccCceEEEEEccc
Confidence 4999999999999999864
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=279.33 Aligned_cols=307 Identities=13% Similarity=0.069 Sum_probs=229.5
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc---cccc-ccccc--ceeeE---------ecCCC----------C-
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK---QSLE-EENVN--MESQL---------YQPSS----------K- 434 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~---~~~~-~~~~~--~~~~i---------~~~~~----------~- 434 (730)
..++.+++|+|+|++|+++ .++.|++||+.+++ .... ..... ..+.. ..... +
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578899999999955554 67899999998887 3211 00000 00000 00000 0
Q ss_pred --------eeEeecccCCCCCCeeEEEEe--CcEE-EEee-CCEEEEEEcC--CceEEEEEc--CCCCCeEEEEEcCCC-
Q 004789 435 --------LVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYFILLPQD- 497 (730)
Q Consensus 435 --------~~~~~~~~~~h~~~V~~l~~s--~~~l-~s~s-dg~I~vwd~~--t~~~~~~~~--~~~~~v~~i~~spdg- 497 (730)
.........+|...|.+++|+ +++| ++++ ||.|++||+. +++.+..+. .|...|++++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 000000011467789999999 8885 8887 9999999999 888888886 567899999999999
Q ss_pred eEEEEECCCcEEEEecCCCceEE----EEcCCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEcCCCceecceeecccc
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~----~~~~h~~~V~~l~~spd---~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
.|++|+.||.|++|++.++.... .+.+|...|++++|+|+ +++|++|+.|+.|++||+.+++ .+..+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~ 237 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-----IVDKWL 237 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-----CEEEEC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-----eeeeee
Confidence 99999999999999998876543 67789999999999999 9999999999999999998853 333235
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-----------------------CCCCCeEEE
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------------------KMDLPITYA 626 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~-----------------------~h~~~v~~~ 626 (730)
.+|. +.|.+++|+ ++++|++ +.|+.|++||+.+++.+..+... .....|.++
T Consensus 238 ~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 238 FGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp CCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred cCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 5777 799999999 9999999 58999999999999988777531 124678999
Q ss_pred EEecCCCEEEEEE-cCCeEEEEEC--CCc---eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC-------
Q 004789 627 TYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------- 693 (730)
Q Consensus 627 ~~spdg~~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~------- 693 (730)
+|+|++++|++++ .|+.|++|++ .++ +.+..+. +| +.|. +++|+| ++ ++++.+.
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~~-~~v~~~~~~~~~~~ 380 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-DE-FQVTLDNKESSGVQ 380 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-TE-EEEEECCTTCCSSC
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-Cc-EEEEEecccCCCCC
Confidence 9999999999999 8999999999 555 5555554 43 4477 999999 54 4554432
Q ss_pred CCcEEEEeCCCCceeee
Q 004789 694 NGRVHVIEPLESEVEWG 710 (730)
Q Consensus 694 Dg~I~iWd~~~~~~~w~ 710 (730)
+..|.+|.+.....+|.
T Consensus 381 ~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 381 KNFAKFIEYNLNENSFV 397 (450)
T ss_dssp CCSEEEEEEETTTTEEE
T ss_pred CcceEEEEEEcCCCeEE
Confidence 55689998876544453
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-30 Score=281.75 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=208.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
....|.+++|||||+++|+++.|++|+ |.+..+. + .+|...|++++|+ ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---------------------l-----~gh~~~v~~V~FsPdg- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---------------------I-----NCNSKNLFHVKEFPLE- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---------------------C-----SSBGGGTEEEEEECCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---------------------e-----cCCCccEEEEEECCCC-
Confidence 578999999999999999999999999 5433322 1 1699999999998 22
Q ss_pred EEEeeCCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCC-----CeEE
Q 004789 459 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RITC 531 (730)
Q Consensus 459 l~s~sdg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-----~V~~ 531 (730)
.+..|++.+++....+. .|...|.+++|+|+| .||+++.||.|++||..+ ++..+. |.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 44455555444333333 567889999999999 999999999999999543 666677 665 4999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecc--eeeccc---ccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 606 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~--~~i~~~---~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~ 606 (730)
++|+|||++|++|+.||+|++||+.++..... ..+.++ ..+|. +.|.+++|+||| .++++.|++|++||+.
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence 99999999999999999999999998532100 012312 36676 799999999999 5445799999999998
Q ss_pred CCcee---eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE--e
Q 004789 607 TLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA--H 681 (730)
Q Consensus 607 ~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~--s 681 (730)
++... +++.. +|...|.+++|+ |+.|++++ ++.|++||+.+++...... || ...|+ .++| +
T Consensus 211 ~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------gh-~~~V~--~va~~~s 276 (588)
T 2j04_A 211 ASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------GS-LENFH--IIPLNHE 276 (588)
T ss_dssp SSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------SC-CSCCC--EEEETTC
T ss_pred CCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------CC-CceEE--EEEeeeC
Confidence 77632 34533 467899999999 68999887 6999999999988643332 65 56688 9999 9
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 004789 682 PLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 682 p~~~~~las~s~Dg~I~iWd~~ 703 (730)
| ++..+++++.||+ ++|...
T Consensus 277 ~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 K-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S-SCEEEEECSSCEE-EEEESS
T ss_pred C-CCCEEEEEcCCCC-EEEeec
Confidence 9 8899999999999 999985
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.6e-29 Score=266.68 Aligned_cols=286 Identities=10% Similarity=0.029 Sum_probs=211.7
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+|.+.|++++|+|||++|++|+.++ +++|++.+.... .. .+...+..+++. +
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~ 70 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI--------------------MS-----QEMRHLSKVRMLHRT 70 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE--------------------EE-----EECSCCCEEEECTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee--------------------ee-----eecCCeEEEEEcCCC
Confidence 3999999999999999999888775 789997655431 00 011246667776 6
Q ss_pred cEE-EEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-ceEEEEcCCCCCeEEEE
Q 004789 457 SHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 533 (730)
Q Consensus 457 ~~l-~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~ 533 (730)
+.+ ++++ |++|++||..+++.+..+. +...|.+++++++. ++++ .|+.|++||+.++ +.+..+.. ....++
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 665 4555 8999999999999999887 66789999999885 3333 4789999999988 66655553 445566
Q ss_pred EeCCCCEEEE--EeCCCcEEEEEcCCCceec----------cee-ecccccCCCCCCCCeEEEEEecCCcEEEE-EecCc
Q 004789 534 YSLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 599 (730)
Q Consensus 534 ~spd~~~l~s--~s~dg~I~vwd~~~~~~~~----------~~~-i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~ 599 (730)
+++ ..+++ |+.||.|++||+.++.... ..+ +. ...+|. +.|++++|+|+|++|++ +.|++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCS
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCC
Confidence 777 56666 5789999999999743100 011 33 467887 79999999999999999 58998
Q ss_pred -EEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEE--Eeec---ccc----------
Q 004789 600 -IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINL---TAY---------- 663 (730)
Q Consensus 600 -I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~---~~~---------- 663 (730)
|++||+++++++..+..+.|...|.+++|+|+|++|++++.|+.|++||+..+.... .+.. ..+
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 999999999999888743378999999999999999999999999999997653211 1100 000
Q ss_pred -cCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 664 -AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 664 -~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.+.+. ..... .++|+| +++.+++++.||.+++|++..++
T Consensus 299 ~~~~~~-~~~~~--~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVDK-HVRGC--KIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCT-TCCCC--EEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred EeccCC-CCCce--EEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 01111 11224 789999 89999999999999999987653
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.8e-27 Score=257.21 Aligned_cols=314 Identities=11% Similarity=0.057 Sum_probs=235.1
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEE-EEEeCCCcEEEeecCCCccccccccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L-~s~s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
+..+++++.|++|++||+.. ......+. +...+.+++|+|+|++| ++++.|+.|++||+.+++.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~---~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTS---NKVTATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------
T ss_pred CEEEEEcCCCCEEEEEECCC---CeEEEEee-----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------
Confidence 34678899999999999963 22223332 34569999999999987 5666899999999876654
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 497 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg- 497 (730)
.... .+...+.+++|+ +++|++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++
T Consensus 67 --------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~ 128 (391)
T 1l0q_A 67 --------------IATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK 128 (391)
T ss_dssp --------------EEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS
T ss_pred --------------EEEE---ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCC
Confidence 1111 133489999999 77775554 699999999999998888754 468999999999
Q ss_pred eE-EEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCceecceeecccccCCCC
Q 004789 498 LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 575 (730)
Q Consensus 498 ~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~ 575 (730)
.+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.. . ... +.
T Consensus 129 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~-~~~-~~- 199 (391)
T 1l0q_A 129 KLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----D-TVK-VE- 199 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----E-EEE-CS-
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----E-EEe-cC-
Confidence 66 68888999999999999998888765 457999999999887 57778999999999985432 2 111 22
Q ss_pred CCCCeEEEEEecCCcEEEEE----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEE-EEEEcCCeEEEEECC
Q 004789 576 ETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTS 650 (730)
Q Consensus 576 ~~~~v~~l~~spdg~~l~~s----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-~sgs~dg~I~iwd~~ 650 (730)
..+.+++|+|++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 200 --~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 200 --AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp --SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 478999999999999884 478999999999988887764 3458899999999987 566789999999999
Q ss_pred CceEEEEeeccccc----------CCCCcccceeeEEEEEecCC-----C--CEEEEEeCCCcEEEEeCCCCce
Q 004789 651 TLELRCQINLTAYA----------QPGTISLELYPLVIAAHPLE-----P--NRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 651 ~~~~~~~~~~~~~~----------~~gh~~~~v~~~~v~~sp~~-----~--~~las~s~Dg~I~iWd~~~~~~ 707 (730)
+++.+..+..+... +.++ ...+. .....+.. . -.|...+.|..+++|++.++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a--~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 275 TNTITATMAVGKNPYASGQFIGSIPVQP-VYPSA--DFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TTEEEEEEECSSSEECCSSCEEECSSCC-CCCBC--CEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CCcEEEEEECCcCCCccceeeecccccc-ccccc--ccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 99988877632110 0000 00111 12222110 1 3466777889999999987754
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-29 Score=265.50 Aligned_cols=274 Identities=10% Similarity=-0.008 Sum_probs=215.2
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
...+|+..+++|+.||+|++||+... .....+ ....|.++.|+|+ +++++.|++|++|+.....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~---~~~~~~------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~---- 106 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS---KTITTI------TTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI---- 106 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS---SCEEEE------EEECCCTTCCCCS---EEEECSTTEEEEEETTTEE----
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC---cEEEEE------ecCCceeeeeCCc---eEEecCCCeEEEEEccCce----
Confidence 56679999999999999999999742 222232 2456778889998 9999999999999986543
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEcCCceEEEEEcC-CCCCeEEEE
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFI 492 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~~t~~~~~~~~~-~~~~v~~i~ 492 (730)
.+|+..++..++.... +|...|.+++|+ ++++++++ ||+|++||+.+++....... +...|.+++
T Consensus 107 --------~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 107 --------TILDSKTNKVLREIEV-DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp --------EEEETTTCCEEEEEEC-CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred --------EEeecCCcceeEEeec-CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 4788888775543332 477899999997 67999999 99999999999999777744 455899999
Q ss_pred EcCCC-eEEEEECCCcEEEEecCCCceE-EEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccc
Q 004789 493 LLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 569 (730)
Q Consensus 493 ~spdg-~l~sgs~dg~I~iwd~~~~~~~-~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~ 569 (730)
|+|+| +|++|+.||.|++||+++++.+ ..+.+ |.+.|++++|+|++.+|++++ |+.|++||+++++... .+. .
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~-~ 253 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYP-T 253 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSC-C
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eec-c
Confidence 99999 9999999999999999999887 88888 999999999999999999999 5599999999854321 111 1
Q ss_pred ccCCCCCCCCe--EEEEEecCCcEEEEE-e-cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec---CCCEEEEEEcCC
Q 004789 570 QTGLVPETTIV--NHIQFHPDQIHLLSI-H-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---DGKCIYVSCKSG 642 (730)
Q Consensus 570 ~~~h~~~~~~v--~~l~~spdg~~l~~s-~-dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp---dg~~l~sgs~dg 642 (730)
...|. ..+ .+++|+|+|++|+++ . |+.|++|++.+....... .++..++|++ ++..+++++.||
T Consensus 254 ~~~~~---~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 254 YTIPE---FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETT
T ss_pred ccccc---ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCC
Confidence 11122 223 469999999999994 4 899999999765432222 4567788888 889999999999
Q ss_pred eEEEEECC
Q 004789 643 HVKVFDTS 650 (730)
Q Consensus 643 ~I~iwd~~ 650 (730)
.+.++-..
T Consensus 325 ~~~~~~~~ 332 (343)
T 3lrv_A 325 GIAAILKT 332 (343)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEec
Confidence 99888644
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.4e-28 Score=268.29 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=202.0
Q ss_pred CCCCCeeEEEEe---CcEEEEee-CCEEEEEEcCC----------ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCc
Q 004789 444 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 507 (730)
Q Consensus 444 ~h~~~V~~l~~s---~~~l~s~s-dg~I~vwd~~t----------~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~ 507 (730)
.|.+.|++++|+ +.+|++++ +|.|++||+.+ ......+.+|...|++++|+|++ .|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 589999999999 45788888 99999999987 67788889999999999999998 8999999999
Q ss_pred EEEEecCCCce-------EEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCC
Q 004789 508 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 579 (730)
Q Consensus 508 I~iwd~~~~~~-------~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~ 579 (730)
|++||+.++.. ...+.+|...|.+++|+| ++..+++++.||.|++||++++.. ...+. ....|. ..
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~---~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSH-TVDAHT---AE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSE-EEECCS---SC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--Cccee-EeecCC---CC
Confidence 99999987421 466778999999999999 678999999999999999997521 12222 234666 68
Q ss_pred eEEEEEecCCc-EEEE-EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCc---
Q 004789 580 VNHIQFHPDQI-HLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL--- 652 (730)
Q Consensus 580 v~~l~~spdg~-~l~~-s~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~~~~--- 652 (730)
|++++|+|++. .+++ +.||.|++||+++ ...+..+. .|...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999987 4666 4889999999987 45566665 3689999999999985 7999999999999999872
Q ss_pred -----------eEEEEeecccccCCCCcccceeeEEEEEecCCCC-EEEEEeCCCcEEEEeCCCC
Q 004789 653 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 653 -----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las~s~Dg~I~iWd~~~~ 705 (730)
+++..+. || ...|+ +++|+| ++. +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHG-------GH-TAKIS--DFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECC-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcC-------CC-CCCce--EEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 3444433 55 55688 999999 677 9999999999999999754
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-28 Score=260.41 Aligned_cols=272 Identities=7% Similarity=0.010 Sum_probs=201.7
Q ss_pred EEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CC
Q 004789 387 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GG 465 (730)
Q Consensus 387 v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg 465 (730)
..+.+++.+|++|+.||+|++||+.+++.... + ....|.++.|+.. +++++ |+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~----------~---------------~~~~v~~~~~~~~-~~s~s~D~ 95 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITT----------I---------------TTPNPRTGGEHPA-IISRGPCN 95 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEE----------E---------------EEECCCTTCCCCS-EEEECSTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEE----------E---------------ecCCceeeeeCCc-eEEecCCC
Confidence 34556888999999999999999987765211 0 0234445555522 77777 88
Q ss_pred EEEEEEcC---------CceEEEEEc-CCCCCeEEEEEcC--CC-eEEEEECCCcEEEEecCCCceEEEEcC-CCCCeEE
Q 004789 466 KISIFSLE---------TFQTLATFA-NPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITC 531 (730)
Q Consensus 466 ~I~vwd~~---------t~~~~~~~~-~~~~~v~~i~~sp--dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~ 531 (730)
+|++|+.. +++.+..+. .|...|.+++|+| ++ ++++|+.||.|++||+++++.+..... |...|++
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSS 175 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCE
T ss_pred eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEE
Confidence 88888654 566555555 6778999999999 99 999999999999999999998777644 5668999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCcee
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 611 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~ 611 (730)
++|+|++.+|++|+.||.|++||+++++.. ...+..+|. +.|++++|+|+|.+|+++.++.|++||+++++.+
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~h~---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFPVDEE---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT 248 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECCCCTT---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEeccCC---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc
Confidence 999999999999999999999999985421 021222376 7999999999999999976789999999988776
Q ss_pred eeecCC-CCCCCe--EEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec--CCC
Q 004789 612 SQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEP 685 (730)
Q Consensus 612 ~~~~~~-~h~~~v--~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp--~~~ 685 (730)
..+... .|...+ .+++|+|+|++|++++. |+.|++|++.++...... .++. .++|+| .+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------------~~~~--~~~~~~~~~~~ 314 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------------DEES--ALCLQSDTADF 314 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------------EEEE--ECCC----CCC
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------------cCce--eEecCcccccc
Confidence 554321 122333 46999999999999998 999999999765432221 1233 556654 245
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004789 686 NRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~ 705 (730)
..+++++.||.+.++-....
T Consensus 315 ~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 315 TDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp CEEEEEEETTEEEEEEECSS
T ss_pred ceeEEEecCCceEEEEecCC
Confidence 68888888998888765443
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=259.67 Aligned_cols=277 Identities=11% Similarity=0.122 Sum_probs=215.8
Q ss_pred cCCCCC---CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 338 STSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 338 ~~~spd---g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
..++|+ |++|++|+.||.|++|++... +......+. +|.+.|.+++|+|++++|++++.||.|++||+.+++
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDS---GQTIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTT---SCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCC---CceeEEEec--cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence 578999 699999999999999999741 222212222 499999999999999999999999999999987665
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE--e--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeE
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 489 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~--s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~ 489 (730)
. .... +|...|.+++| + +.+|++++ ||.|++||+.+++.+..+..+. .+.
T Consensus 120 ~---------------------~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~ 174 (368)
T 3mmy_A 120 A---------------------IQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCY 174 (368)
T ss_dssp E---------------------EEEE---ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEE
T ss_pred c---------------------eeec---cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cce
Confidence 3 1111 48999999999 6 77899999 9999999999999988888665 566
Q ss_pred EEEEcCCCeEEEEECCCcEEEEecCCCceEEEE--cCCCCCeEEEEEeCCCCE----EEEEeCCCcEEEEEcCCCceecc
Q 004789 490 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNV----LVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 490 ~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~--~~h~~~V~~l~~spd~~~----l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
++.+.++ .+++++.++.+++||+......... ..+...+.++.+.++... +++++.||.|++||++.....
T Consensus 175 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-- 251 (368)
T 3mmy_A 175 CADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-- 251 (368)
T ss_dssp EEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--
T ss_pred EEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--
Confidence 6666654 7888899999999999876543332 224456677777665544 999999999999999885320
Q ss_pred eeecccccCCCC---------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCC
Q 004789 564 KFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 633 (730)
Q Consensus 564 ~~i~~~~~~h~~---------~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 633 (730)
..+. ...+|.. ....|++++|+|++++|++ +.||.|++||+.+++.+..+. .|...|.+++|+|+|+
T Consensus 252 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~ 328 (368)
T 3mmy_A 252 KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QLDQPISACCFNHNGN 328 (368)
T ss_dssp HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSCEEEEEECTTSS
T ss_pred ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CCCCCceEEEECCCCC
Confidence 1111 2233320 0026999999999999999 489999999999999988876 4689999999999999
Q ss_pred EEEEEEcCCeEEEEECC
Q 004789 634 CIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 634 ~l~sgs~dg~I~iwd~~ 650 (730)
+|++|+.|+..+.|++.
T Consensus 329 ~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 329 IFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CEEEEECCCSTTCGGGC
T ss_pred eEEEEeccccccccccc
Confidence 99999998865555543
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-28 Score=266.88 Aligned_cols=244 Identities=12% Similarity=0.064 Sum_probs=193.2
Q ss_pred CCCCcEEEEEEecCCCEE-EEEeCCCcEEEeecC--CCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe
Q 004789 379 SFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L-~s~s~dg~I~iWd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s 455 (730)
+|.+.|++++|+|+|++| ++++.||.|++||+. ++... .......|...|.+++|+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL---------------------KLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE---------------------EEEEEEECSSCEEEEEEC
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee---------------------eeeecccCCCCceEEEEc
Confidence 366689999999999996 888899999999987 44431 111001377899999999
Q ss_pred --CcEEEEee-CCEEEEEEcCCceEEE----EEcCCCCCeEEEEEcCC---C-eEEEEECCCcEEEEecCCCceEEE-Ec
Q 004789 456 --GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LK 523 (730)
Q Consensus 456 --~~~l~s~s-dg~I~vwd~~t~~~~~----~~~~~~~~v~~i~~spd---g-~l~sgs~dg~I~iwd~~~~~~~~~-~~ 523 (730)
+++|++++ +|.|++|++.++.... .+.+|...|++++|+|+ + +|++|+.|+.|++||+.+++.+.. +.
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence 88999999 9999999998877554 67789999999999999 8 999999999999999999988877 55
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc-------------------cCCCCCCCCeEEEE
Q 004789 524 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-------------------TGLVPETTIVNHIQ 584 (730)
Q Consensus 524 ~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~-------------------~~h~~~~~~v~~l~ 584 (730)
+|...|++++|+ ++++|++++.|+.|++||+.+++........... .... ..|.+++
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~ 314 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE---FAVSKII 314 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC---CCEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce---EEEEEEE
Confidence 899999999999 9999999999999999999997654332211000 0111 4689999
Q ss_pred EecCCcEEEEE--ecCcEEEEeC--CCC---ceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECC
Q 004789 585 FHPDQIHLLSI--HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTS 650 (730)
Q Consensus 585 ~spdg~~l~~s--~dg~I~iwd~--~~~---~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~------dg~I~iwd~~ 650 (730)
|+|++++++++ .++.|++||+ .++ +.+..+.. ...+.+++|+|++.++++++. +..|.+|.+.
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~---~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF---PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC---SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc---CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99999999984 6899999999 555 55666654 378999999996544444443 4457777654
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-28 Score=288.78 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=207.0
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. ...... .+|...|.+++|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~~~l--~~h~~~V~~l~~s~~~ 65 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK 65 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCTT
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------ccceec--cCCcCceEEEEecCCC
Confidence 5999999999999999999999999999999864321 111111 1699999999997
Q ss_pred -CcEEEEee-CCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCCC--ceEEEEcCCC
Q 004789 456 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQ 526 (730)
Q Consensus 456 -~~~l~s~s-dg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~ 526 (730)
+++|++|+ ||.|++||+.+++ ....+.+|...|++++|+|+ + .+++|+.||.|++||++++ .....+.+|.
T Consensus 66 ~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 67899999 9999999999987 77888899999999999999 8 9999999999999999887 3445667899
Q ss_pred CCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---Cc
Q 004789 527 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 590 (730)
Q Consensus 527 ~~V~~l~~sp-------------d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd---g~ 590 (730)
..|.+++|+| ++..+++|+.||.|++||++++.... .... ...+|. +.|++++|+|+ ++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 220 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCCCCCC
Confidence 9999999999 58999999999999999998753211 2222 456777 79999999999 89
Q ss_pred EEEE-EecCcEEEEeCCCCcee---eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 591 HLLS-IHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 591 ~l~~-s~dg~I~iwd~~~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
++++ +.||.|++||+.++... .......|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9998 58999999999876421 1222234688999999999999999999999999999985
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-28 Score=287.80 Aligned_cols=248 Identities=13% Similarity=0.081 Sum_probs=208.1
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcC--CceEEEEEcCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEecCC
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 515 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~--t~~~~~~~~~~~~~v~~i~~spd--g-~l~sgs~dg~I~iwd~~~ 515 (730)
+|.+.|++++|+ +++|++|+ ||.|++||+. +++....+.+|...|++++|+|+ + .|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 799999999999 88999999 9999999998 66788899999999999999988 8 999999999999999999
Q ss_pred Cc--eEEEEcCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec----
Q 004789 516 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 587 (730)
Q Consensus 516 ~~--~~~~~~~h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp---- 587 (730)
++ .+..+.+|...|++++|+|+ ++.+++|+.||.|++||++++...... ...+|. ..|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~----~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE----EEECCS---SCEEEEEECCCC--
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee----EeecCC---CceEEEEecCcccc
Confidence 86 77788889999999999999 999999999999999999885322111 234566 7899999999
Q ss_pred ---------CCcEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEecC---CCEEEEEEcCCeEEEEECC
Q 004789 588 ---------DQIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 588 ---------dg~~l~~-s~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~spd---g~~l~sgs~dg~I~iwd~~ 650 (730)
++.++++ +.||.|++||++++. ....+. .|...|.+++|+|+ +.+|++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 589999999998763 444443 57899999999999 9999999999999999998
Q ss_pred CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 651 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 651 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
++........ ....+| ...|+ +++|+| ++.+|++|+.||.|++|++..+.
T Consensus 238 ~~~~~~~~~~--~~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTL--LKEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCB--SSSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEE--eccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 8742211110 111133 55677 999999 89999999999999999998653
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.2e-28 Score=263.02 Aligned_cols=299 Identities=8% Similarity=0.032 Sum_probs=197.0
Q ss_pred CcEEEEEE---ecCCCEEEEEeCCCcEEEeecCCCcccccc-----------ccccceeeEecCCCCeeEeecccCCCCC
Q 004789 382 GRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLEE-----------ENVNMESQLYQPSSKLVMTNDIAADPKD 447 (730)
Q Consensus 382 ~~V~~v~f---spdg~~L~s~s~dg~I~iWd~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~h~~ 447 (730)
....++.| +|++..|++++.++.|.+|+.......... .........|........ ..|..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 90 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE-----NLHDG 90 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC-----C----
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc-----cccCC
Confidence 34555666 455555677777889999987543321110 000111122222111111 13444
Q ss_pred CeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEE-----EEcCCCCCeEEEEEcC--------CC-eEEEEECCCcEEE
Q 004789 448 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-----TFANPPPIATYFILLP--------QD-LFAFGFDDSSILV 510 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~-----~~~~~~~~v~~i~~sp--------dg-~l~sgs~dg~I~i 510 (730)
.+....++ +.+|++++ |++|++||..++.... .+.+|.+.|++++|+| |+ +|++|+.|++|++
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 44444445 77899999 9999999999886543 3568999999999998 78 9999999999999
Q ss_pred EecCCCceEEEEcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceee-------------------cccc
Q 004789 511 HCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL-------------------HSFQ 570 (730)
Q Consensus 511 wd~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i-------------------~~~~ 570 (730)
||+.++..+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++++....... ....
T Consensus 171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 171 WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9999888888888899999999999987 4799999999999999988643211000 0012
Q ss_pred cCCCCCCCCeEEEEEe-cCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCe------------------EEEEEec
Q 004789 571 TGLVPETTIVNHIQFH-PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPI------------------TYATYSC 630 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~s-pdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v------------------~~~~~sp 630 (730)
.+|. ..+.++.|+ |+++.++++ .|+++++||+..++....+.. |...+ ....|+|
T Consensus 251 ~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred cccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEcc
Confidence 3455 678899987 799999985 899999999987765544432 12222 2233443
Q ss_pred --CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 631 --DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 631 --dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
++.++++|+.||.|++||+.+++...... +| ...|+ +++|+| +|++||++++|| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-------~~-~~~V~--svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPI-------QL-GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEE-------EC-SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEec-------CC-CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 45577888899999999999998776655 44 45688 999999 899999998766 556654
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1e-27 Score=256.14 Aligned_cols=270 Identities=10% Similarity=0.107 Sum_probs=204.0
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEE-EEeCCCcEEEeecCCCcc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~-s~s~dg~I~iWd~~~~~~ 415 (730)
+.+++|||++||+|+.++ +++|+... ....... +...+..++++++++.++ +++.|++|++||..+++.
T Consensus 24 ~v~fs~dg~~la~g~~~~-~~iw~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLKS-FEIYNVHP----VAHIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp EEEECTTSSEEEEECSSE-EEEEEETT----EEEEEEE-----ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEcCCE-EEEEecCC----cceeeee-----ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 368999999999998765 78999863 2222111 233588899999999874 567789999999876654
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCc-eEEEEEcCCCCCeEEEEEc
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILL 494 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~-~~~~~~~~~~~~v~~i~~s 494 (730)
+... .+...|.+++++.+.++++.++.|++||+.++ +.+..+.. ....++++
T Consensus 94 ---------------------~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 94 ---------------------VSRI---KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp ---------------------EEEE---ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred ---------------------EEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 1111 25678999999966777778999999999988 66555544 34456667
Q ss_pred CCCeEEE--EECCCcEEEEecCCCc----------------eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEEc
Q 004789 495 PQDLFAF--GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDA 555 (730)
Q Consensus 495 pdg~l~s--gs~dg~I~iwd~~~~~----------------~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~-I~vwd~ 555 (730)
+ ..+++ |+.||.|++||+.++. ++..+.+|.+.|++++|+|+|++|++|+.|++ |++||+
T Consensus 147 ~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 147 N-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp T-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred c-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 7 53333 6899999999999865 26788999999999999999999999999998 999999
Q ss_pred CCCceecceeecccccC-CCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee--eec----------------
Q 004789 556 VGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS--QLV---------------- 615 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~-h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~--~~~---------------- 615 (730)
++++ .+..+..+ |. +.|.+++|+|+|++|++ +.|+.|++||+++..... .+.
T Consensus 226 ~~~~-----~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 226 EDGV-----LVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp TTCC-----EEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred CCCc-----EEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 9854 33323334 66 79999999999999999 588999999997653211 100
Q ss_pred ---CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 616 ---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 616 ---~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
..........++|++||++|++++.||.+++|++..+
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0011223467899999999999999999999997653
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.8e-26 Score=246.75 Aligned_cols=264 Identities=16% Similarity=0.126 Sum_probs=213.1
Q ss_pred EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE-EEee-CCEEEEE
Q 004789 395 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIF 470 (730)
Q Consensus 395 ~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l-~s~s-dg~I~vw 470 (730)
.+++++.|+.|++||+.+++. +... .+...+.+++|+ ++++ ++++ |+.|++|
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~---------------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV---------------------TATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE---------------------EEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeE---------------------EEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEEE
Confidence 577888899999999876654 1111 133458999999 7766 5665 9999999
Q ss_pred EcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE-EEEeCC
Q 004789 471 SLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGAD 547 (730)
Q Consensus 471 d~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~s~d 547 (730)
|+.+++.+..+..+. .+.+++|+|++ .++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|
T Consensus 60 d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 60 DTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp ETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 999999999888665 89999999999 665 5556799999999999988888754 568999999999987 678889
Q ss_pred CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 004789 548 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITY 625 (730)
Q Consensus 548 g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 625 (730)
+.|++||+.+++.. . ....+ ..+.+++|+|+++++++ + .++.|++||+++++.+..+. +...+.+
T Consensus 138 ~~v~~~d~~~~~~~-----~-~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~ 204 (391)
T 1l0q_A 138 KTVSVINTVTKAVI-----N-TVSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSG 204 (391)
T ss_dssp TEEEEEETTTTEEE-----E-EEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEE
T ss_pred CEEEEEECCCCcEE-----E-EEecC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCccc
Confidence 99999999985432 2 22223 35799999999998865 4 67899999999998887774 3567899
Q ss_pred EEEecCCCEEEEEE---cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEE-EEEeCCCcEEEEe
Q 004789 626 ATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVIE 701 (730)
Q Consensus 626 ~~~spdg~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~l-as~s~Dg~I~iWd 701 (730)
++|+|+|++|++++ .++.|++||+.+++.+..+. ++ . .+. +++|+| +++++ ++++.|+.|++||
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-------~~-~-~~~--~~~~s~-dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-------VG-P-DPA--GIAVTP-DGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-------CC-S-SEE--EEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-------cC-C-Ccc--EEEEcc-CCCEEEEEcCCCCEEEEEE
Confidence 99999999999888 68999999999998887775 32 2 255 899999 78766 6778999999999
Q ss_pred CCCCceee
Q 004789 702 PLESEVEW 709 (730)
Q Consensus 702 ~~~~~~~w 709 (730)
+.+++...
T Consensus 273 ~~~~~~~~ 280 (391)
T 1l0q_A 273 TATNTITA 280 (391)
T ss_dssp TTTTEEEE
T ss_pred CCCCcEEE
Confidence 99887653
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-27 Score=259.36 Aligned_cols=286 Identities=10% Similarity=0.040 Sum_probs=191.7
Q ss_pred CCCCCCeeEeecCCCcEEEEeecCCCCCc----ceeeeecCC------------------CCCCCcEEEEEEecCCCEEE
Q 004789 340 SLPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPD------------------NSFGGRVVRLIYSHSGDFLV 397 (730)
Q Consensus 340 ~spdg~~lat~~~dg~i~lWd~~~~~~~~----~~~~~~l~~------------------~gh~~~V~~v~fspdg~~L~ 397 (730)
.+|++..+++++.|+.|++|+........ ....+.... ..|...+....+++++.+|+
T Consensus 26 ~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 26 QSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp TSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 35565556666678999999875322111 111110000 11233333344455677899
Q ss_pred EEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----------CcEEEEee-CCE
Q 004789 398 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS-GGK 466 (730)
Q Consensus 398 s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----------~~~l~s~s-dg~ 466 (730)
+++.|++|+|||...+..... ..+. ...+|.+.|.+++|+ +++||+|+ |++
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~----------------~~~~--~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQ----------------HVLG--GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEE----------------EEEC--TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred EEeCCCcEEEEECCCCcccee----------------eeec--ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 999999999999877654110 0111 123799999999995 57899999 999
Q ss_pred EEEEEcCCceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEE-----------------------
Q 004789 467 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----------------------- 521 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~----------------------- 521 (730)
|++||+.++.++..+..|...|.+++|+|++ +|++|+.|++|++||+++++....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999999998888888899999999999998 799999999999999988754322
Q ss_pred --EcCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCceecceeecc-------------cccCCCCCCCCeEEEEE
Q 004789 522 --LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVNHIQF 585 (730)
Q Consensus 522 --~~~h~~~V~~l~~s-pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~-------------~~~~h~~~~~~v~~l~~ 585 (730)
..+|...|.++.|+ |+++.+++++.|+++++||+.++.......... ....+ .......+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 323 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLLGACP 323 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSSCCEE
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----CcceeEEE
Confidence 23577888999987 799999999999999999998753221110000 00001 12223344
Q ss_pred ec-CCc-EEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 586 HP-DQI-HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 586 sp-dg~-~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
+| .+. +++++ .||.|++||+.+++....... |..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 44 334 44555 789999999999988776653 578999999999999999998766 5566543
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2e-27 Score=260.97 Aligned_cols=250 Identities=14% Similarity=0.190 Sum_probs=200.8
Q ss_pred CCCcEEEEEEecC-CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 380 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 380 h~~~V~~v~fspd-g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
|.+.|++++|+|+ +.+|++++.||.|++|++........ ........... .+|...|.+++|+ +
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------~~~~~~~~~~~--~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------PSGECQPDLRL--RGHQKEGYGLSWNPNL 193 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------TTCCCCCSEEE--ECCSSCCCCEEECTTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------ccccCCCcEEe--cCCCCCeEEEEeCCCC
Confidence 9999999999997 67999999999999999876321000 00001111111 1699999999999 5
Q ss_pred c-EEEEee-CCEEEEEEcCCceE-------EEEEcCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEecCCC---ceEEEE
Q 004789 457 S-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKL 522 (730)
Q Consensus 457 ~-~l~s~s-dg~I~vwd~~t~~~-------~~~~~~~~~~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~---~~~~~~ 522 (730)
. +|++|+ ||.|++||+.++.. ...+.+|...|.+++|+|+ + .|++++.|+.|++||++++ +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 5 899999 99999999987322 4567789999999999995 4 9999999999999999987 577788
Q ss_pred cCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc-EEEE-EecCc
Q 004789 523 KGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 599 (730)
Q Consensus 523 ~~h~~~V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~-~l~~-s~dg~ 599 (730)
..|...|++++|+|++. ++++|+.||.|++||+++.. .++. ...+|. ..|.+++|+|+++ ++++ +.|+.
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTSC
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCCc
Confidence 88999999999999987 68899999999999998732 2333 345566 7899999999986 4666 48999
Q ss_pred EEEEeCCCC--------------ceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCc
Q 004789 600 IDVYEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 600 I~iwd~~~~--------------~~~~~~~~~~h~~~v~~~~~spdg~-~l~sgs~dg~I~iwd~~~~ 652 (730)
|++||+... +.+..+ .+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEEC--CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEc--CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999762 344444 35688999999999999 8999999999999998764
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.7e-26 Score=237.61 Aligned_cols=271 Identities=11% Similarity=0.021 Sum_probs=194.9
Q ss_pred eEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccccee
Q 004789 347 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 426 (730)
Q Consensus 347 lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~ 426 (730)
+++++. .+|++|+......=+...+.. +|..+|..+.|+||-.-|++..-..
T Consensus 57 ~~~~~~-~~v~lw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~----------------------- 108 (356)
T 2w18_A 57 IITACE-DVVSLWKALDAWQWEKLYTWH----FAEVPVLQIVPVPDVYNLVCVALGN----------------------- 108 (356)
T ss_dssp EEEEES-SEEEEEEESSSSBEEEEEEEE----CCSSCEEEECCCTTCCSCEEEEECS-----------------------
T ss_pred EEEecc-ceEEEcccCCCccceeeEEEe----ccCceeEEEEEcCcccceeeeeecc-----------------------
Confidence 455554 899999997532113444444 4899999999999876444432110
Q ss_pred eEecCCCCeeEeecccCCCCCCeeEEEEe-C-----cEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEE
Q 004789 427 QLYQPSSKLVMTNDIAADPKDSISCFALR-G-----SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFA 500 (730)
Q Consensus 427 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~-----~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~ 500 (730)
-+...|+.++++ + +++++++ ..+.+|++.+++ .+.
T Consensus 109 -----------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~~g~---------------------lv~ 149 (356)
T 2w18_A 109 -----------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLTKRR---------------------LVS 149 (356)
T ss_dssp -----------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEETTTE---------------------EEE
T ss_pred -----------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecCCCc---------------------EEE
Confidence 145677888888 3 4566655 337777653332 333
Q ss_pred EEE--CCCcEEEEec-CCCceEEEEcCCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCC
Q 004789 501 FGF--DDSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 574 (730)
Q Consensus 501 sgs--~dg~I~iwd~-~~~~~~~~~~~h~~~V~~l~~sp---d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~ 574 (730)
+++ .|+.|++|++ .+|+.+..+.+|...++.++|++ ++..|++++.|++|++||+.+++. +.+ +.+|.
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~t-L~g~~ 223 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKK-MHIDD 223 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEE-EECCC
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEE-EcCCC
Confidence 322 4788888888 44778888888999999999999 779999999999999999999653 332 22222
Q ss_pred CCCCCeEEEEEecCCcEEE------------E-EecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEecCCCEEEEE
Q 004789 575 PETTIVNHIQFHPDQIHLL------------S-IHEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 575 ~~~~~v~~l~~spdg~~l~------------~-s~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~spdg~~l~sg 638 (730)
.....+.+++|+|+|.+++ + +.|++|++||..+++.+..+. ..+|...+.+..++ +.++++|
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 1114678889999999874 3 367899999999998876652 23455555555544 8899999
Q ss_pred EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 639 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 639 s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
+.|++|+|||+.+++.+.++. ||+...+. .++|+| ++++|++|+.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecC
Confidence 999999999999999999987 66554444 689999 8999999999999999996
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=4.4e-26 Score=249.85 Aligned_cols=273 Identities=13% Similarity=0.042 Sum_probs=218.8
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecC--CCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP--DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~--~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
...++|++..+++++.|++|++||+.. ++....... ..+|.+.|++++|+|+|+++++++.|+.|++||+.+++
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 457888888999999999999999863 233321111 02589999999999999999999999999999987655
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE-EEee-CCEEEEEEcCCceEEEEEcCCCCCeEE
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATY 490 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l-~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~ 490 (730)
. ..... .|...+.+++|+ ++++ ++++ ++.|++||+.+++.+..+..+ ..+.+
T Consensus 203 ~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~ 258 (433)
T 3bws_A 203 Y---------------------KATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRG 258 (433)
T ss_dssp E---------------------EEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEE
T ss_pred E---------------------EEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceE
Confidence 3 11111 478899999999 6766 4554 899999999999998888754 45899
Q ss_pred EEEcCCC-eEEEEE--------CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCce
Q 004789 491 FILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 491 i~~spdg-~l~sgs--------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~s~dg~I~vwd~~~~~~ 560 (730)
++|+|+| .+++++ .|+.|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.+++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 9999999 888887 48899999999998877663 66689999999999755 5668899999999998543
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e---------------cCcEEEEeCCCCceeeeecCCCCCCCeE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMDLPIT 624 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~---------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 624 (730)
. ..+. +. ..+.+++|+|+|++++++ . ||.|++||+.+++.+..+.. ...+.
T Consensus 338 ~-----~~~~--~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~ 404 (433)
T 3bws_A 338 Q-----KSIP--VF---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPT 404 (433)
T ss_dssp E-----EEEE--CS---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEE
T ss_pred E-----EEec--CC---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCc
Confidence 2 2121 22 578999999999988884 3 46999999999998888764 56789
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECCC
Q 004789 625 YATYSCDGKCIYVSCK-SGHVKVFDTST 651 (730)
Q Consensus 625 ~~~~spdg~~l~sgs~-dg~I~iwd~~~ 651 (730)
+++|+|+|++|++++. |+.|++|++..
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999998875 99999999864
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.5e-25 Score=249.48 Aligned_cols=328 Identities=10% Similarity=0.061 Sum_probs=242.7
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcce-eeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeec--CCCcc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW--QSNKQ 415 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~-~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~--~~~~~ 415 (730)
.++|++..+++++.|++|.+||... +++ .++.. +|. +..++|+|||++|++++.|++|.+||+ .+.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t----~~~~~~i~~---g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS----KKIVKVIDT---GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT----CCEEEEEEC---STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC----ceEEEEEec---Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 5789999999999999999999863 333 33321 233 899999999999999999999999998 44332
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe------CcEEEEee--CCEEEEEEcCCceEEEEEcCC---
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP--- 484 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s------~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~--- 484 (730)
+.... +...+..++|+ |+++++++ +++|.+||..+++++..+..+
T Consensus 215 ---------------------~~~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~ 270 (543)
T 1nir_A 215 ---------------------VAEIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 270 (543)
T ss_dssp ---------------------EEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred ---------------------EEEEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc
Confidence 22111 34567888886 56888887 799999999999999988752
Q ss_pred --------CCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEE--EEcCCCCCeEEEEEeCCCCEEEEE-eCCCcEE
Q 004789 485 --------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSS-GADAQLC 551 (730)
Q Consensus 485 --------~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~spd~~~l~s~-s~dg~I~ 551 (730)
...+.++.++|++ .+++...++.|.+||..+++.+. .+. +...+.+++|+|+|++++++ ..+++|.
T Consensus 271 ~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 271 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEE
Confidence 2378999999988 77777889999999998876544 443 56678899999999987655 4689999
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-CcEEEEE--ecCcEEEEeCCC-------CceeeeecCCCCCC
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDL 621 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~~l~~s--~dg~I~iwd~~~-------~~~~~~~~~~~h~~ 621 (730)
+||..+++........ ...|. +....+ ++|+ +..++++ .|++|.+||+.+ .++++++.. |..
T Consensus 350 v~D~~tg~l~~~i~~g--~~ph~---g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~ 421 (543)
T 1nir_A 350 VIDSKDRRLSALVDVG--KTPHP---GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGG 421 (543)
T ss_dssp EEETTTTEEEEEEECS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCS
T ss_pred EEECCCCeEEEeeccC--CCCCC---CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCC
Confidence 9999997644322211 12233 333333 5787 5555555 478999999988 888888875 467
Q ss_pred CeEEEEEecCCCEEEEEE-------cCCeEEEEECCCceEE-EEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe-
Q 004789 622 PITYATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL- 692 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs-------~dg~I~iwd~~~~~~~-~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s- 692 (730)
.+..+.++|+|++|++++ .+++|.|||+.+++.. ..+........+.+...+. .+.|+| +|+.++++.
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~-~g~~~~~s~~ 498 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV--QPEYNK-RGDEVWFSVW 498 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEE--EEEECS-SSSEEEEEEE
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceE--eccCCC-CCCEEEEEee
Confidence 788899999999999987 3789999999999866 4432111000011134455 999999 888877652
Q ss_pred ----CCCcEEEEeCCCCceeeec
Q 004789 693 ----TNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 693 ----~Dg~I~iWd~~~~~~~w~~ 711 (730)
.|+.|.|||..+++.+-..
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCCCCCCeEEEEECCCceEEEee
Confidence 4799999999999876443
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.7e-25 Score=230.16 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=167.5
Q ss_pred CCCcEEEEEEecC----CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe
Q 004789 380 FGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 455 (730)
Q Consensus 380 h~~~V~~v~fspd----g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s 455 (730)
|.+.|++++|+|| ++++++++.+ +.+|++.+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~------------------------------------------- 144 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK------------------------------------------- 144 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETT-------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCC-------------------------------------------
Confidence 6789999999999 9999998844 77776532
Q ss_pred CcEEEEee---CCEEEEEEc-CCceEEEEEcCCCCCeEEEEEcC---CC-eEEEEECCCcEEEEecCCCceEEEEcCCC-
Q 004789 456 GSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP---QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ- 526 (730)
Q Consensus 456 ~~~l~s~s---dg~I~vwd~-~t~~~~~~~~~~~~~v~~i~~sp---dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~- 526 (730)
++.+.++. |+.|++|++ .+|+.+..+..|...++.++|++ ++ .|++|+.|++|+|||+.+|++++++.+|.
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 23344432 889999999 55888899999999999999999 66 99999999999999999999999998754
Q ss_pred --CCeEEEEEeCCCCEE------------EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 527 --NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 527 --~~V~~l~~spd~~~l------------~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
..+.+++|+|+|.++ ++|+.|++|++||..+++......+. +..+|. +.+.+..+ ++..+
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~p~Gh~---~~~lsg~~--sg~~l 298 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-LPPGQA---GRFLEGDV--KDHCA 298 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-CCTTCC---CCEEEEEE--ETTEE
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-ccCCCc---ceeEcccc--CCCEE
Confidence 467788999999876 56788999999999987644322222 245665 34444444 47788
Q ss_pred EEE-ecCcEEEEeCCCCceeeeecCCCCCCC-eEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 593 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 593 ~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~-v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
+++ .|++|+|||+.+++++.++.. |... +.+++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 885 799999999999999999864 4444 456899999999999999999999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=4.4e-24 Score=232.96 Aligned_cols=288 Identities=11% Similarity=-0.000 Sum_probs=214.2
Q ss_pred CCCCCCC-eeEeec----CCC----cEEEEee--cCCCCCcceeeeecCCCCCCCcEEEEEEec--------------CC
Q 004789 339 TSLPDAD-SAVCAK----SLE----KSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH--------------SG 393 (730)
Q Consensus 339 ~~spdg~-~lat~~----~dg----~i~lWd~--~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp--------------dg 393 (730)
.++++|. .+++|+ .|| +|+|||+ .. ........+. +|...+..+++++ .+
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP---GTVLAQNSYK--VNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST---TCEEEEEEEE--ECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC---CCEEeeeEEE--cChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 4455554 555775 467 8999999 53 2223222232 3888888888775 25
Q ss_pred CEEEEEeCC------CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C
Q 004789 394 DFLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 464 (730)
Q Consensus 394 ~~L~s~s~d------g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d 464 (730)
..++.++.+ +.|++||+..... ..+. +|...|.+++|+ |++|++++ +
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~-------------------~~l~-----~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQ-------------------FVVH-----RSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSC-------------------EEEE-----EESSCEEEEEECTTSSEEEEEECT
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCC-------------------EEEe-----CCCCcceeeEEcCCCCEEEEEEec
Confidence 667777664 6899999864322 0111 478899999999 88999998 6
Q ss_pred C---EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCc--EEEEecCCCceEEEEcCCCCCeEEEEEeCC
Q 004789 465 G---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 465 g---~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~--I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 537 (730)
+ .|++||+.+++.. .+..|...+.+++|+||| .|+ +++.++. |++||+.+++. ..+..|...+.+++|+||
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence 4 9999999998875 566788899999999999 666 6666654 99999998876 567778889999999999
Q ss_pred CCEEEEEeC-CC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec---CcEEEEeCCCCce
Q 004789 538 LNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE---GQIDVYEAPTLNH 610 (730)
Q Consensus 538 ~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d---g~I~iwd~~~~~~ 610 (730)
|++|++++. ++ .|++||+.+++. .. ...+. ..+.+++|+|+|++|+++ .+ ..|++||+.+++.
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~~~~---~~----l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNINGGAP---QR----ITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCC---EE----CCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCcEEEEEECCCCCE---EE----EecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 999998876 44 678889887532 11 12233 578899999999999984 43 5799999988876
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 611 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 611 ~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
. .+.. + ..+.+++|+|||++|++++.++ .|++||+.++. ...+. +| .+.|. +++|+|
T Consensus 348 ~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~-------~~-~~~v~--~~~~~~ 407 (415)
T 2hqs_A 348 Q-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-------AT-DGQVK--FPAWSP 407 (415)
T ss_dssp E-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------CS-SSEEE--EEEECC
T ss_pred E-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------CC-CCCCc--CCcccc
Confidence 4 3432 2 3899999999999999888877 89999998554 44554 44 56688 999999
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1e-23 Score=247.85 Aligned_cols=319 Identities=11% Similarity=0.071 Sum_probs=227.8
Q ss_pred ccCCCCCCCeeEeecC-CC-----cEEEEeecCCCCCcceeeeecCCCCCC----------------------CcEEEEE
Q 004789 337 ESTSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------------GRVVRLI 388 (730)
Q Consensus 337 ~~~~spdg~~lat~~~-dg-----~i~lWd~~~~~~~~~~~~~~l~~~gh~----------------------~~V~~v~ 388 (730)
...+||||++|++++. |+ +|++||+.. +....+.- .+++. ..|.+++
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEEEC-GGGTC--------------------CCEESCCCE
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEccc-hhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4689999999999998 88 899999963 33333221 11122 3488999
Q ss_pred EecCCCEEEEEeCCCcEEEeecCCC---ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee
Q 004789 389 YSHSGDFLVALTQTATHKLWKWQSN---KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 463 (730)
Q Consensus 389 fspdg~~L~s~s~dg~I~iWd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s 463 (730)
|||||++|++++. +.|++||+.++ .. .+ ...|...+.+++|+ |++|++++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---------------------~~---l~~~~~~~~~~~~SPDG~~la~~~ 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV---------------------RQ---LTHGEGFATDAKLSPKGGFVSFIR 170 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC---------------------CB---CCCSSSCEEEEEECTTSSEEEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE---------------------EE---cccCCcccccccCCCCCCEEEEEe
Confidence 9999999999887 89999998776 32 01 01467789999999 89999999
Q ss_pred CCEEEEEEcCCceEEEEEcCCCCC----------------eEEEEEcCCC-eEEEEECCC--------------------
Q 004789 464 GGKISIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS-------------------- 506 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~~~----------------v~~i~~spdg-~l~sgs~dg-------------------- 506 (730)
++.|++||+.+++.......+... +.+++|+||| .|++++.|+
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 889999999998876655444432 4789999999 888887765
Q ss_pred -------------cEEEEecCC-CceEEEEc--CCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCCCceeccee
Q 004789 507 -------------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKF 565 (730)
Q Consensus 507 -------------~I~iwd~~~-~~~~~~~~--~h~~~V~~l~~spd~~~l~s~s~-----dg~I~vwd~~~~~~~~~~~ 565 (730)
.|++||+.+ ++...... .|...+.+++| |||++|++++. +..|++||+.+++......
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 789999998 87655443 37788999999 99999987654 5679999999865322111
Q ss_pred ecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC-CCceeeeecCCCCCCCeEEE-EEecCCCEEEE-EEcC
Q 004789 566 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYV-SCKS 641 (730)
Q Consensus 566 i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~-~~spdg~~l~s-gs~d 641 (730)
.. ..+.. ..+..++|+|||++++++ .+|.++||.+. ++. ...+.. +...+.++ .|+|||+.|+. ++.+
T Consensus 330 ~~--~~~~~---~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 330 ET--SPTWV---PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp EE--CSSCC---CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSS
T ss_pred cC--CCCcC---CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCC
Confidence 11 00100 135689999999977775 67766676654 344 555543 46778787 59999987764 4445
Q ss_pred C--eEEEEECCC-ceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCc
Q 004789 642 G--HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 706 (730)
Q Consensus 642 g--~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D----g~I~iWd~~~~~ 706 (730)
+ .++||++.. +.....+. + ...+. .++|+| ++++|+....+ +.+.+|+...+.
T Consensus 402 ~~~~~~l~~~~~~g~~~~~l~-------~--~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 402 SARESQIYAVPLQGGQPQRLS-------K--APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp CTTCBEEEEEETTCCCCEECC-------C--SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred CCceEEEEEEEcCCCCeeecc-------c--CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 5 899999864 44344443 2 23366 899999 88887765443 468999886543
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=7.4e-24 Score=231.19 Aligned_cols=277 Identities=12% Similarity=0.045 Sum_probs=205.9
Q ss_pred CCcEEEEEEecCCC-EEEEEe----CCC----cEEEeec--CCCccccccccccceeeEecCCCCeeEeecccCCCCCCe
Q 004789 381 GGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 449 (730)
Q Consensus 381 ~~~V~~v~fspdg~-~L~s~s----~dg----~I~iWd~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V 449 (730)
...|....|++.|. ++++|+ .+| .+++||+ .+++.... ..+ .+|...+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-------------------~~~--~~~~~~~ 120 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-------------------NSY--KVNKQWL 120 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-------------------EEE--EECGGGH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-------------------eEE--EcChhHH
Confidence 35677788988886 555776 467 8999998 76654211 000 0244444
Q ss_pred eEEEEe----------------CcEEEEee-C------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC
Q 004789 450 SCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD 505 (730)
Q Consensus 450 ~~l~~s----------------~~~l~s~s-d------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d 505 (730)
..++++ +..++.++ + +.|++||+.. .....+..|...+.+++|+||| .|++++.+
T Consensus 121 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEec
Confidence 443332 44555555 3 6999999974 5567777889999999999999 99999987
Q ss_pred C---cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEE-EEeCCCc--EEEEEcCCCceecceeecccccCCCCCCCC
Q 004789 506 S---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTI 579 (730)
Q Consensus 506 g---~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~s~dg~--I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~ 579 (730)
+ .|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++. |++||+.+++. . ....|. ..
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~ 268 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------R-QVTDGR---SN 268 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------E-ECCCCS---SC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------E-eCcCCC---Cc
Confidence 5 9999999998875 5666888999999999999888 6666655 99999988542 1 233444 57
Q ss_pred eEEEEEecCCcEEEEE-e-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCc
Q 004789 580 VNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 652 (730)
Q Consensus 580 v~~l~~spdg~~l~~s-~-dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d---g~I~iwd~~~~ 652 (730)
+.+++|+|||++|+++ . ++ .|++||+.+++.. .+. .+...+.+++|+|||++|++++.+ +.|++||+.++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 9999999999999884 3 34 6888899877643 333 236678899999999999988875 58999999998
Q ss_pred eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCc
Q 004789 653 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLESE 706 (730)
Q Consensus 653 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg---~I~iWd~~~~~ 706 (730)
+.. .+. ++ . .+. +++|+| ++++|++++.|+ .|++||+..+.
T Consensus 346 ~~~-~l~-------~~-~-~~~--~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 346 GVQ-VLS-------ST-F-LDE--TPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEE-ECC-------CS-S-SCE--EEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CEE-Eec-------CC-C-CcC--CeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence 764 332 32 2 466 899999 899999888777 79999997554
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=7.9e-23 Score=230.30 Aligned_cols=299 Identities=14% Similarity=0.122 Sum_probs=214.8
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEec----CCCEEEEEeC-CCcEEEeecC
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLWKWQ 411 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fsp----dg~~L~s~s~-dg~I~iWd~~ 411 (730)
...++|||++|++++.|++|++||+... ......++. +...+..++||| ||++|++++. +++|.+||..
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIK-----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEEEEe-----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 3579999999999999999999999311 122233333 566789999999 9999999985 8999999987
Q ss_pred CCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc-EEEEee-CCEEEEEEcCCceEEE--EEcCCC
Q 004789 412 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA--TFANPP 485 (730)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~t~~~~~--~~~~~~ 485 (730)
+.+.... +.......-...+ .+...+.++.++ +. ++++.. ++.|.+||..+++.+. .+. +.
T Consensus 257 t~~~~~~----------i~~~g~~~~~~~~--~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~ 323 (543)
T 1nir_A 257 TLEPKQI----------VSTRGMTVDTQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AA 323 (543)
T ss_dssp TCCEEEE----------EECCEECSSSCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CC
T ss_pred cccccee----------ecccCcccCcccc--ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cC
Confidence 7664221 1100000000000 123478899999 44 455555 8999999998865443 443 55
Q ss_pred CCeEEEEEcCCC-eEEEE-ECCCcEEEEecCCCceEEEEcC----CCCCeEEEEEeCC-CCEEEEEe-CCCcEEEEEcCC
Q 004789 486 PIATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDAVG 557 (730)
Q Consensus 486 ~~v~~i~~spdg-~l~sg-s~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~spd-~~~l~s~s-~dg~I~vwd~~~ 557 (730)
..+.+++|+|+| +++++ ..+++|.+||..+++++..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 667789999999 66655 4688999999999999888864 65544444 5787 55666665 589999999987
Q ss_pred Cce--ecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe--------cCcEEEEeCCCCcee-eeecC------CCCC
Q 004789 558 WKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQLVP------DKMD 620 (730)
Q Consensus 558 ~~~--~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~--------dg~I~iwd~~~~~~~-~~~~~------~~h~ 620 (730)
... ...+.++ ...+|. +.+..++++|+|++|+++. +++|.+||+.+++.. ..+.. ..+.
T Consensus 403 ~~~~~~~~~~v~-~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 403 KNHPQYAWKKVA-ELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp TTCTTTBTSEEE-EEECSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCchhcCeEEE-EEEcCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 210 0123344 334454 4678899999999999953 779999999998877 44311 1346
Q ss_pred CCeEEEEEecCCCEEEEEE-----cCCeEEEEECCCceEEEEee
Q 004789 621 LPITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 621 ~~v~~~~~spdg~~l~sgs-----~dg~I~iwd~~~~~~~~~~~ 659 (730)
..+..+.|+|+|+.|+++. .|+.|.|||..+++++.++.
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 7899999999999999774 37999999999999998886
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3.3e-23 Score=252.65 Aligned_cols=330 Identities=13% Similarity=0.049 Sum_probs=239.8
Q ss_pred ccCCCCCCCeeEeecCC------CcEEEEeecCCCCCcceeeeecCCCCCCCcE-------EEEEEecCCCEEEEEeCC-
Q 004789 337 ESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQT- 402 (730)
Q Consensus 337 ~~~~spdg~~lat~~~d------g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V-------~~v~fspdg~~L~s~s~d- 402 (730)
...+||||+.||+++.+ ..|++|++. ++...+++ +|...+ .+++|||||+.+++++.+
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~----~g~~~~lt----~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGE----NGEIKRIT----YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETT----TTEEEECC----CCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECC----CCCeEEcc----cCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 35899999999988643 478899986 34444443 388888 999999999966676644
Q ss_pred -----CcEEEeecCCCccccc-ccc---------------------------ccceeeEecCC-CCeeEeecccCCCCCC
Q 004789 403 -----ATHKLWKWQSNKQSLE-EEN---------------------------VNMESQLYQPS-SKLVMTNDIAADPKDS 448 (730)
Q Consensus 403 -----g~I~iWd~~~~~~~~~-~~~---------------------------~~~~~~i~~~~-~~~~~~~~~~~~h~~~ 448 (730)
..|.+|++.++..... ... ......+|... .+..... .+|...
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~ 205 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTH 205 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSC
T ss_pred CCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCc
Confidence 3577788766553221 100 01112333221 2333332 269999
Q ss_pred eeEEEEe-CcEEEEee-CCEEEEEEcCC-ceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC
Q 004789 449 ISCFALR-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 524 (730)
Q Consensus 449 V~~l~~s-~~~l~s~s-dg~I~vwd~~t-~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 524 (730)
+.++.|+ +.++++++ ++.+.+|.+.. +.....+..|. .+...+|+||| .++++ .++.|++||+.... +..+.+
T Consensus 206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~ 282 (1045)
T 1k32_A 206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEI 282 (1045)
T ss_dssp CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCC
T ss_pred ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeecc
Confidence 9999999 64555556 78888887653 44455555554 45677999999 88877 48899999995444 345554
Q ss_pred -----------CCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCC-CeEEEEEecCCcE
Q 004789 525 -----------HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQIH 591 (730)
Q Consensus 525 -----------h~~~V~~l~~s-pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~-~v~~l~~spdg~~ 591 (730)
|...+.+++|+ |||++|++++ ++.|.+|++.++... . ...+. . .+..++|+ ||+.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-----~--~~~~~---~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----K--VPEPL---RIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----E--CSCCS---CEEEEEECSS-SEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-----E--ccCCC---cceEEeeeEc-CCCe
Confidence 33468999999 9999999887 789999999875321 1 22333 4 78899999 9999
Q ss_pred EEEE-ecCcEE-EEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc
Q 004789 592 LLSI-HEGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 592 l~~s-~dg~I~-iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
++.+ .++.+. +||+.+++.. .+. .|...+..++|||||++|++++.++.|++||+.+++...... +|
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-------~~- 419 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-------SR- 419 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CS-
T ss_pred EEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-------CC-
Confidence 9884 566788 8899776654 343 457889999999999999999999999999999998777664 33
Q ss_pred ccceeeEEEEEecCCCCEEEEEeCCC----------cEEEEeCCCCc
Q 004789 670 SLELYPLVIAAHPLEPNRIALGLTNG----------RVHVIEPLESE 706 (730)
Q Consensus 670 ~~~v~~~~v~~sp~~~~~las~s~Dg----------~I~iWd~~~~~ 706 (730)
.+.+. .++|+| |+++|++++.++ .|++||+.+++
T Consensus 420 ~~~v~--~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 420 EAMIT--DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SSCCC--CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCcc--ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 45577 899999 899999887654 89999998775
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=7.3e-23 Score=239.81 Aligned_cols=324 Identities=13% Similarity=0.082 Sum_probs=220.8
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCC---cEEEEEEecCCCEEEEEeCC---------C
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQT---------A 403 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~---~V~~v~fspdg~~L~s~s~d---------g 403 (730)
....++|||+++++ +.||+|++||+.. ++...+. . +|.. .|.+++|||||++|++++.+ +
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~~-~--~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVET----NTSTVLI-E--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEEE-C--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCC----CcEEEEe-c--cccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 44689999998876 7899999999974 2333322 1 2443 49999999999999999875 5
Q ss_pred cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEE
Q 004789 404 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATF 481 (730)
Q Consensus 404 ~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~ 481 (730)
.+.+||+.+++. .......+|...+.+++|+ |++|++++++.|++||+.+++.....
T Consensus 92 ~i~~~d~~~~~~---------------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 92 YYVLSKIPHGDP---------------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp EEEEEESSSCCC---------------------EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEE
T ss_pred eEEEEECCCCce---------------------EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEe
Confidence 677887766543 1111111455668899999 88999999999999999998887766
Q ss_pred cCCCCCe------------------EEEEEcCCC-eEEEEECCC----------------------------------cE
Q 004789 482 ANPPPIA------------------TYFILLPQD-LFAFGFDDS----------------------------------SI 508 (730)
Q Consensus 482 ~~~~~~v------------------~~i~~spdg-~l~sgs~dg----------------------------------~I 508 (730)
..+...+ .+++|+||| .|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 6544433 789999999 888877543 79
Q ss_pred EEEecCCCceEEEEcCC------CCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCceecceeecccccCCCCCCC
Q 004789 509 LVHCPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 509 ~iwd~~~~~~~~~~~~h------~~~V~~l~~spd~~~l~s~s~----dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
++||+.+++....+..+ ...+.+++|+|||+++++.+. +..|++||+.+++.... + ...+. +
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~--~---~~~~~---~ 302 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK--H---EDESE---A 302 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE--E---EEECS---S
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE--E---EeccC---C
Confidence 99999988866666654 567899999999998877643 35799999988653211 1 11121 2
Q ss_pred Ce----EEEEEecCCcEEEE--E-ecC------cEEEEe-CCCCce--eeeecCCCCCCCeEE-EEEecCCCEEEEEEcC
Q 004789 579 IV----NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLNH--TSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS 641 (730)
Q Consensus 579 ~v----~~l~~spdg~~l~~--s-~dg------~I~iwd-~~~~~~--~~~~~~~~h~~~v~~-~~~spdg~~l~sgs~d 641 (730)
.+ ..++|+|||+.|+. + .++ .|++|| ..++.. ...+.. + ...+.. ++|+|||+.|+..+.+
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~-~~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS-G-DWDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC-S-SSCEEEEEEEETTTTEEEEEESS
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec-C-CeEEEeeeEEcCCCCEEEEEEcC
Confidence 23 37899999997775 3 455 577888 444441 444442 1 344554 6999999999866655
Q ss_pred ---CeEEEEECCCce--EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCc
Q 004789 642 ---GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NG--RVHVIEPLESE 706 (730)
Q Consensus 642 ---g~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~-Dg--~I~iWd~~~~~ 706 (730)
+.+++|++.... ....+... .+| ...+. .++|+| ++++|+.... ++ ...+++..++.
T Consensus 381 ~~~~~~~l~~~~~~~~~~~~~l~~~----~~~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~~~~~~~~ 445 (723)
T 1xfd_A 381 DLPRRRQLYSANTVGNFNRQCLSCD----LVE-NCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKK 445 (723)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTT----SSS-SCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred CCCcceEEEEEeCCCCCCcceeccc----ccC-CCCeE--EEEECC-CCCEEEEEccCCCCCeEEEEECCCCC
Confidence 789999986432 22222200 002 33466 899999 7887776433 22 34455654444
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=3.4e-22 Score=243.64 Aligned_cols=231 Identities=13% Similarity=0.031 Sum_probs=184.1
Q ss_pred CeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEEcC-----------CCCCeEEEEEc-CCC-eEEEEECCCcEEEEe
Q 004789 448 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----------PPPIATYFILL-PQD-LFAFGFDDSSILVHC 512 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~~~-----------~~~~v~~i~~s-pdg-~l~sgs~dg~I~iwd 512 (730)
.+..++|+ |++|+++.++.|++||+..... ..+.. |...+.+++|+ ||| .+++++ ++.|++|+
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD 323 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence 46677888 8889988899999999955443 35554 23368899999 999 888887 78999999
Q ss_pred cCCCceEEEEcCCCC-CeEEEEEeCCCCEEEEEeCCCcEE-EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 513 PCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLC-VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 513 ~~~~~~~~~~~~h~~-~V~~l~~spd~~~l~s~s~dg~I~-vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
+.++... .+..|.. .+.+++|+ ||+.+++++.++.+. +||+.+++. .. +. +|. ..+..++|+|||+
T Consensus 324 ~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-----~~-l~-~~~---~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 324 VSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-----EK-FE-ENL---GNVFAMGVDRNGK 391 (1045)
T ss_dssp TTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-----EE-CC-CCC---CSEEEEEECTTSS
T ss_pred CCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-----eE-ec-CCc---cceeeeEECCCCC
Confidence 9887654 4666777 89999999 999999998888888 999987432 12 22 454 5799999999999
Q ss_pred EEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC----------eEEEEECCCceEEEEee
Q 004789 591 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----------HVKVFDTSTLELRCQIN 659 (730)
Q Consensus 591 ~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg----------~I~iwd~~~~~~~~~~~ 659 (730)
+|++ +.++.|++||+.+++...... .|...+.+++|||||++|++++.++ .|++||+.+++ ...+.
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~ 468 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT 468 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred EEEEECCCCeEEEEECCCCceEEecc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence 9998 578899999999988776654 3578889999999999999887754 89999999987 44443
Q ss_pred cccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 660 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 660 ~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+| ...+. .++|+| ++++|++++.++...+|+....+
T Consensus 469 -------~~-~~~~~--~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 469 -------TE-NSHDY--APAFDA-DSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp -------CS-SSBEE--EEEECT-TSCEEEEEESCCCCCEECSSSSC
T ss_pred -------CC-CcccC--CceEcC-CCCEEEEEecccCCcCcchhccc
Confidence 33 33455 899999 89999999999999999876443
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=9.3e-22 Score=207.57 Aligned_cols=277 Identities=13% Similarity=0.136 Sum_probs=191.3
Q ss_pred eeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC-CcEEEeecC--CCccccccccc
Q 004789 346 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQ--SNKQSLEEENV 422 (730)
Q Consensus 346 ~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d-g~I~iWd~~--~~~~~~~~~~~ 422 (730)
.+++++.|+.|++|+++..........+. |...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~------- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-----VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-----CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-----cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------
Confidence 34444789999999996311111222222 77889999999999999999887 999999986 3322
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEc---CCceEEEEEcCCCCCeEEEEEcC
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL---ETFQTLATFANPPPIATYFILLP 495 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~---~t~~~~~~~~~~~~~v~~i~~sp 495 (730)
..+.... ....+.+++|+ ++++++++ ++.|.+||+ .+++....+..+ ..+.+++|+|
T Consensus 75 ------------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 75 ------------TFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp ------------EEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred ------------eeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 0111111 12378899999 77776665 789999999 444555555543 4588999999
Q ss_pred CC-eEEEEE-CCCcEEEEecCC-CceEE----EEcC-CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC--Cceecce
Q 004789 496 QD-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSK 564 (730)
Q Consensus 496 dg-~l~sgs-~dg~I~iwd~~~-~~~~~----~~~~-h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~--~~~~~~~ 564 (730)
+| .+++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+++++++++ .++.|.+||+.. ++.....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 99 777777 899999999987 65432 2222 345788999999999776554 789999999954 3221112
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC--C--CceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--T--LNHTSQLVPDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~--~--~~~~~~~~~~~h~~~v~~~~~spdg~~l~sg 638 (730)
.+.....++.. ...+..++|+|+|++|++ + .++.|.+||+. + .+.+..+.. ...+..++|+|+|++|+++
T Consensus 219 ~~~~~~~~~~~-~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 219 TLDMMPENFSD-TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEECSCTTCCS-CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEE
T ss_pred eccccCccccc-cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEe
Confidence 22212222110 135678999999998886 4 67899999997 2 334444433 2338899999999999888
Q ss_pred E-cCCeEEEEE--CCCceE
Q 004789 639 C-KSGHVKVFD--TSTLEL 654 (730)
Q Consensus 639 s-~dg~I~iwd--~~~~~~ 654 (730)
+ .++.|.+|+ ..+++.
T Consensus 295 ~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp CTTTCEEEEEEEETTTTEE
T ss_pred cCCCCeEEEEEEcCCCcee
Confidence 8 579999995 446654
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.7e-21 Score=204.12 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=207.2
Q ss_pred CCCcEEEEEEecCCCEEEEEeC-------CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQ-------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 452 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~-------dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l 452 (730)
....+..++|+|+|+++++++. ++.|.+||..+++. ..... ....+.++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------~~~~~---~~~~~~~~ 94 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------TQAIH---NDLKPFGA 94 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------EEEEE---ESSCCCSE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------EEEEe---cCCCcceE
Confidence 4567889999999999888875 45788888766543 11111 22346678
Q ss_pred EEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCC---------eEEEEEcCCC-eEEEEE--CCCcEEEEecCCC
Q 004789 453 ALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTK 516 (730)
Q Consensus 453 ~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~---------v~~i~~spdg-~l~sgs--~dg~I~iwd~~~~ 516 (730)
+|+ |+++++++ ++.|.+||..+++.+..+..+... +.+++|+|+| .+++++ .++.|.+||..++
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 888 77555554 799999999999998888765432 6899999999 666665 4788999999999
Q ss_pred ceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-
Q 004789 517 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 595 (730)
Q Consensus 517 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s- 595 (730)
+.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++........ ..++. ..+..++|+|+|++++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITD 249 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEe
Confidence 998888766667889999999999999999999999999986543322221 11222 467889999999988874
Q ss_pred -ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 596 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 596 -~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
.++.|.+||+.+++.+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+.. ....
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~ 316 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PTHP 316 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CSEE
T ss_pred CCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CCCC
Confidence 45899999999999888776422 25699999999777666 689999999999998877752 2234
Q ss_pred eeEEEEEecCCCCEEEEEeCCC
Q 004789 674 YPLVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~Dg 695 (730)
. +++|+| ++++++++..++
T Consensus 317 ~--~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 317 N--SLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp E--EEEECT-TSCEEEEEEECC
T ss_pred C--eEEEcC-CCCEEEEEEccc
Confidence 5 899999 888776666554
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3e-21 Score=203.23 Aligned_cols=287 Identities=12% Similarity=0.041 Sum_probs=199.8
Q ss_pred EEEecCCCE-EEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee
Q 004789 387 LIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 463 (730)
Q Consensus 387 v~fspdg~~-L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s 463 (730)
..|.+++++ +++++.++.|.+||..+++. ..... .+...+ +++|+ |+++++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------LNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------EEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------eeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 456666665 56667789999999877654 11111 234455 89998 77666655
Q ss_pred --CCEEEEEEcCCceE-EEEEcCCCCCeEEEEEcCCC-eEEEEECCC---cEEEEecCCCceEEEEcCCCCCeEEEEEeC
Q 004789 464 --GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSL 536 (730)
Q Consensus 464 --dg~I~vwd~~t~~~-~~~~~~~~~~v~~i~~spdg-~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 536 (730)
++.|.+||+.+++. ...+..+.....+++|+|+| +++++..++ .|.+||+.+++.+..+.. ...+.+++|+|
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 78999999999987 77777666666559999999 777555553 899999999998888764 44578999999
Q ss_pred CCCEEEEE-eCCCc-EEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce--
Q 004789 537 SLNVLVSS-GADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-- 610 (730)
Q Consensus 537 d~~~l~s~-s~dg~-I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~-- 610 (730)
+|++++++ ..++. |.+|++............ .... . ..+..++|+|+|+++++ + .++.|++||+.+++.
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~~-~---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FISG-G---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EECS-S---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCc-cccC-C---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 99865554 55688 999999863221111111 1111 1 45789999999998776 4 578899999998887
Q ss_pred -eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceE--EEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 611 -TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 611 -~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+...... .+....... .++|+| +++
T Consensus 213 ~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~sp-dg~ 285 (331)
T 3u4y_A 213 LLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI-DPRPLFGAN--QMALNK-TET 285 (331)
T ss_dssp EEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC-CCGGGTTCC--CEEECT-TSS
T ss_pred eeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc-CCCCccccc--ceEECC-CCC
Confidence 666653 46678899999999877665 468899999999887 3333211000 011011123 689999 788
Q ss_pred EEEEE-eCCCcEEEEeCCCCceeee
Q 004789 687 RIALG-LTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 687 ~las~-s~Dg~I~iWd~~~~~~~w~ 710 (730)
+|+++ ..++.|.+|++......+-
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEC
T ss_pred EEEEecCCCCcEEEEEecCCcccce
Confidence 77554 4567999999988765443
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=6.1e-22 Score=231.39 Aligned_cols=316 Identities=13% Similarity=0.092 Sum_probs=215.9
Q ss_pred CCeeEeecCCCcEEEEeecCCCCC-cceeeee-c----CC-----CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCC
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEP-SECRTLL-L----PD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 412 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~-~~~~~~~-l----~~-----~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~ 412 (730)
|+.+++++.|+ | +||+...... ....... + .. ..+...|.+++|||| ++++.+ .++.|++||+.+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCC
Confidence 56677777777 8 9998743220 1111100 0 00 001257999999999 656655 459999999876
Q ss_pred CccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCC-----ceEEEEEcCCC
Q 004789 413 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-----FQTLATFANPP 485 (730)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t-----~~~~~~~~~~~ 485 (730)
++. .... .+...+.+++|+ |++|+++.++.|++||+.+ ++.......+.
T Consensus 111 ~~~---------------------~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 111 RKV---------------------TYLF---DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp TEE---------------------EEEE---CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred Cce---------------------EEcc---CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCC
Confidence 543 1111 356678889999 8899997799999999998 87765544443
Q ss_pred CC--------------eEEEEEcCCC-eEEEEE---------------------------------CCCcEEEEecCCCc
Q 004789 486 PI--------------ATYFILLPQD-LFAFGF---------------------------------DDSSILVHCPCTKK 517 (730)
Q Consensus 486 ~~--------------v~~i~~spdg-~l~sgs---------------------------------~dg~I~iwd~~~~~ 517 (730)
.. +.+++|+||| .|++++ .+..|++||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 33 4789999999 888887 34679999999887
Q ss_pred eEEEEc--CCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec--C
Q 004789 518 TKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--D 588 (730)
Q Consensus 518 ~~~~~~--~h~~~V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp--d 588 (730)
...... .|...+.+++|+|||+.|++++.++ .|++||+.+++.. ..+. ...+......+..++|+| |
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~--~~~~--~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV--RTLF--VETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE--EEEE--EEECSSCCCCCSCCEECTTCS
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee--eEEE--EccCCCeECccCCceeecCCC
Confidence 654442 4667899999999999999887775 8999999986221 1111 011110001246789999 9
Q ss_pred CcEEEEE-ecCcEEEEeCC-CCceeeeecCCCCCCCeEE-EEEecCCCEEEEEEcC-C----eEEEEECCCceEEEEeec
Q 004789 589 QIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS-G----HVKVFDTSTLELRCQINL 660 (730)
Q Consensus 589 g~~l~~s-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~-~~~spdg~~l~sgs~d-g----~I~iwd~~~~~~~~~~~~ 660 (730)
|++++++ .++.+++|++. ++..+..+.. +...+.. ++|+|+|+.|+.++.+ + .|+.||+.+++. ..+.
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~- 398 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT- 398 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-
Confidence 9988876 67888888775 5666666653 3666776 7999999988765554 4 677888887763 3332
Q ss_pred ccccCCCCcccceeeEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCc
Q 004789 661 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 706 (730)
Q Consensus 661 ~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D----g~I~iWd~~~~~ 706 (730)
+ ...+. .++|+| ++++++.++.+ +.|++||+.+++
T Consensus 399 -------~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 399 -------P-ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -------C-SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -------C-CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2 33466 899999 88888766443 569999998876
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=9.6e-22 Score=231.04 Aligned_cols=301 Identities=10% Similarity=0.073 Sum_probs=208.2
Q ss_pred CCcEEEEEEecCCCEEEEEeC-CC-----cEEEeecCCCccccc-cc-cccceeeEecCCCCeeEeecccCCCCCCeeEE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKWQSNKQSLE-EE-NVNMESQLYQPSSKLVMTNDIAADPKDSISCF 452 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~-dg-----~I~iWd~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l 452 (730)
...|.+++|||||++|++++. |+ .|++||+.+++.... .. ........+............. .....|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCccee
Confidence 567999999999999999998 88 899999987764221 00 0000000000000000000000 001347889
Q ss_pred EEe--CcEEEEeeCCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCC
Q 004789 453 ALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 453 ~~s--~~~l~s~sdg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 527 (730)
+|+ |++|++++++.|++||+.++. ....+..+...+.+++|+||| .|++++ ++.|++||+.+++.......+..
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred EECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 999 899999999999999999883 445566788889999999999 888887 46999999998877655444433
Q ss_pred C----------------eEEEEEeCCCCEEEEEeCCC---------------------------------cEEEEEcCC-
Q 004789 528 R----------------ITCLAYSLSLNVLVSSGADA---------------------------------QLCVWDAVG- 557 (730)
Q Consensus 528 ~----------------V~~l~~spd~~~l~s~s~dg---------------------------------~I~vwd~~~- 557 (730)
. +.+++|+|||++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999987765 788999987
Q ss_pred CceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e-----cCcEEEEeCCCCceeeeecCCCCCC---CeEEEEE
Q 004789 558 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-----EGQIDVYEAPTLNHTSQLVPDKMDL---PITYATY 628 (730)
Q Consensus 558 ~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~-----dg~I~iwd~~~~~~~~~~~~~~h~~---~v~~~~~ 628 (730)
++.. .+. ....+. ..+..++| |||++|+++ . +..|++||+.+++....+..+. .. .+..++|
T Consensus 274 ~~~~---~~~-~~~~~~---~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~ 344 (741)
T 2ecf_A 274 AQTQ---WID-LGKEQD---IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRF 344 (741)
T ss_dssp CCCE---EEC-CCSCSS---EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEE
T ss_pred CceE---Eec-CCCCcc---eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEE
Confidence 6532 121 111344 57899999 999999973 3 4579999999988766654321 22 4568899
Q ss_pred ecCCCEEEEEEcCCeEEEEECC-CceEEEEeecccccCCCCcccceeeEEE-EEecCCCCEEE-EEeCCC--cEEEEeCC
Q 004789 629 SCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIA-LGLTNG--RVHVIEPL 703 (730)
Q Consensus 629 spdg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~~~~~la-s~s~Dg--~I~iWd~~ 703 (730)
+|||+++++++.||.++||.++ ++. ...+. ++ ...+. .+ +|+| +++.|+ +++.|+ .++||++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-------~~-~~~v~--~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALT-------HG-NWSVD--ELLAVDE-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESC-------CS-SSCEE--EEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeee-------ec-ceEEE--eEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999987777765 344 44443 33 33455 65 5999 787665 555565 89999986
Q ss_pred C
Q 004789 704 E 704 (730)
Q Consensus 704 ~ 704 (730)
.
T Consensus 413 ~ 413 (741)
T 2ecf_A 413 L 413 (741)
T ss_dssp T
T ss_pred c
Confidence 4
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.9e-21 Score=203.21 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=200.7
Q ss_pred CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCC-CeeEEEEe--CcEEEE-ee-CCEEE
Q 004789 394 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLFS-AS-GGKIS 468 (730)
Q Consensus 394 ~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~-~V~~l~~s--~~~l~s-~s-dg~I~ 468 (730)
++|++++.++.|.+||..+++. ...... ++.. .+.+++|+ |+++++ +. ++.|.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------EEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence 4789999999999999876643 111110 1222 47789999 666554 44 78999
Q ss_pred EEEcCCceEEEEEcCCC-----CCeEEEEEcCCC-eEEEEE------------CCCcEEEEecCCCceEEEEcCCCCCeE
Q 004789 469 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT 530 (730)
Q Consensus 469 vwd~~t~~~~~~~~~~~-----~~v~~i~~spdg-~l~sgs------------~dg~I~iwd~~~~~~~~~~~~h~~~V~ 530 (730)
+||+.+++.+..+.... ..+.+++|+|+| .+++++ .++.|.+||+.+++.+..+.. ...+.
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 138 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence 99999999888776322 256689999999 888776 579999999999988877764 45678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecC----------
Q 004789 531 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG---------- 598 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg---------- 598 (730)
+++|+|++++|+++ ++.|.+||+.+++.... +..+.. ...+.|+|+++.++++ .++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~-----~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLVED-----KPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEEEE-----ECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEeee-----eecccc-----CCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence 89999999988887 68999999998653221 111210 1123778888876652 222
Q ss_pred -------------cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC
Q 004789 599 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 665 (730)
Q Consensus 599 -------------~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 665 (730)
.|.+||+.+++.. .+....+...+.+++|+|||++++++ ++.|++||+.+++.+..+..
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----- 278 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----- 278 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----
T ss_pred cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----
Confidence 4789999988775 33333446778899999999999988 79999999999988777652
Q ss_pred CCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeecc
Q 004789 666 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 666 ~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~ 712 (730)
...+. +++|+| ++++|++++.++.|++||+.+++......
T Consensus 279 ----~~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 279 ----PHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ----SSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ----CCcee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 12356 899999 89999989999999999999998765543
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.3e-20 Score=196.38 Aligned_cols=276 Identities=9% Similarity=0.035 Sum_probs=191.3
Q ss_pred CCCCCC-eeEeecCCCcEEEEeecCCCCCcce-eeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCCccc
Q 004789 340 SLPDAD-SAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 416 (730)
Q Consensus 340 ~spdg~-~lat~~~dg~i~lWd~~~~~~~~~~-~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~~~~ 416 (730)
+.++++ .+++++.++.|++||... ++. ..+.. +...+ +++|+|+|+++++++. ++.|.+||..++...
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~~~~----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDT----LEILNQITL----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTT----CCEEEEEEC----CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcc----cceeeeEEc----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 444444 467888899999999863 333 23221 45566 9999999998777776 789999998766530
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C-C--EEEEEEcCCceEEEEEcCCCCCeEE
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIATY 490 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d-g--~I~vwd~~t~~~~~~~~~~~~~v~~ 490 (730)
..... .+..++.+++|+ |++++++. + + .|.+||+.+++.+..+..+ ....+
T Consensus 76 --------------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 132 (331)
T 3u4y_A 76 --------------------VVAIQ--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG 132 (331)
T ss_dssp --------------------EEEEE--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred --------------------EEecc--cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence 11111 244455558999 88888655 4 3 9999999999998887754 45689
Q ss_pred EEEcCCC-eEEEE-ECCCc-EEEEecCCCceE----EEEcCCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCceec
Q 004789 491 FILLPQD-LFAFG-FDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLC 562 (730)
Q Consensus 491 i~~spdg-~l~sg-s~dg~-I~iwd~~~~~~~----~~~~~h~~~V~~l~~spd~~~l~s-~s~dg~I~vwd~~~~~~~~ 562 (730)
++|+|+| .++++ ..++. |.+|++.....+ .........+..++|+|+|+++++ +..++.|.+||+.+++..
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~- 211 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI- 211 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-
Confidence 9999999 55544 55578 999998764332 112234456899999999996655 446899999999886531
Q ss_pred ceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce--eeeecCC--CCC---CCeEEEEEecCCC
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGK 633 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~--~~~~~~~--~h~---~~v~~~~~spdg~ 633 (730)
..+..+..+ ..+..++|+|||++++++ .++.|.+||+.+++. +..+... .+. .....++|+|||+
T Consensus 212 -~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 212 -TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp -EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred -ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 112212222 467889999999988774 577899999998877 3333221 011 2235689999999
Q ss_pred EEEEEEc-CCeEEEEECCCceE
Q 004789 634 CIYVSCK-SGHVKVFDTSTLEL 654 (730)
Q Consensus 634 ~l~sgs~-dg~I~iwd~~~~~~ 654 (730)
+|++++. ++.|.+||+.+...
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEecCCCCcEEEEEecCCcc
Confidence 8876665 56999999987653
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.2e-20 Score=198.56 Aligned_cols=276 Identities=12% Similarity=0.076 Sum_probs=202.7
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCC-cEEEEEEecCCCEEEEE-eCCCcEEEeecCCCccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-RVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQSLEEENV 422 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~-~V~~v~fspdg~~L~s~-s~dg~I~iWd~~~~~~~~~~~~~ 422 (730)
+++++++.+++|++||... ......+.+ ++.. .+..++|+|+|++++++ +.++.|.+||+.+++....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~---~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---- 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK---MAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR---- 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTT---TEEEEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE----
T ss_pred cEEEEcCCCCeEEEEECCC---CcEEEEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee----
Confidence 4788999999999999863 223333332 1222 58889999999876554 4578999999877654111
Q ss_pred cceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-------------CCEEEEEEcCCceEEEEEcCCCCC
Q 004789 423 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPPI 487 (730)
Q Consensus 423 ~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-------------dg~I~vwd~~t~~~~~~~~~~~~~ 487 (730)
+..... ..|...+.+++|+ |+++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 72 ------~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~ 136 (337)
T 1pby_B 72 ------IDLSTP--------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ 136 (337)
T ss_dssp ------EECCBT--------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred ------EEcCCc--------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence 000000 0012256788999 77888774 58999999999998888765 445
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC------------------
Q 004789 488 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA------------------ 548 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg------------------ 548 (730)
+.+++|+|+| .++++ ++.|++||+.+++.+..+..+.. ...+.|+|++..++.++.++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccc
Confidence 7789999999 78777 68999999999998877765431 11337899998766544332
Q ss_pred ------cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCC
Q 004789 549 ------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 622 (730)
Q Consensus 549 ------~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~ 622 (730)
.|.+||+.+++.. . +. ...+. ..+.+++|+|+|++++++ ++.|++||+.+++.+..+.. ...
T Consensus 214 ~~~~~~~v~~~d~~~~~~~-~--~~--~~~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~ 281 (337)
T 1pby_B 214 PTAYRTGLLTMDLETGEMA-M--RE--VRIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHS 281 (337)
T ss_dssp GGGEEEEEEEEETTTCCEE-E--EE--EEECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSC
T ss_pred ccccccceEEEeCCCCCce-E--ee--cCCCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCc
Confidence 4689999986543 1 11 12232 467899999999999988 79999999999988877754 456
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 623 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 623 v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 78999999999999999999999999999998888764
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.8e-20 Score=197.66 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=186.4
Q ss_pred CEEEEE-eCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C-CEEE
Q 004789 394 DFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKIS 468 (730)
Q Consensus 394 ~~L~s~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d-g~I~ 468 (730)
++++++ +.|+.|++|++..... ...+... .+...+.+++|+ |++|++++ + +.|.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~------------------~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGA------------------LTLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSC------------------EEEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCc------------------EEEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEE
Confidence 344444 6799999999853211 0011111 366778899999 88888888 5 9999
Q ss_pred EEEcC--Cce--EEEEEcCCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEecC---CCceEEEEcCCCCCeEEEEEeCCCC
Q 004789 469 IFSLE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLN 539 (730)
Q Consensus 469 vwd~~--t~~--~~~~~~~~~~~v~~i~~spdg-~l~sgs~-dg~I~iwd~~---~~~~~~~~~~h~~~V~~l~~spd~~ 539 (730)
+|++. +++ .+..+..+. .+.+++|+|+| .+++++. ++.|.+||+. .++.+..+..+ ..+.+++|+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 64 AYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNR 141 (343)
T ss_dssp EEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSS
T ss_pred EEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCC
Confidence 99997 554 444555444 77899999999 7766664 8899999994 34455555543 4588999999999
Q ss_pred EEEEEe-CCCcEEEEEcCC-Cceecce--eecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC--Cce-
Q 004789 540 VLVSSG-ADAQLCVWDAVG-WKKLCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH- 610 (730)
Q Consensus 540 ~l~s~s-~dg~I~vwd~~~-~~~~~~~--~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~--~~~- 610 (730)
++++++ .++.|.+||+.+ ++..... ... ...+ ..+..++|+|+++++++ + .++.|.+||+.. ++.
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-TVEG-----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-CSTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccc-cCCC-----CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 888877 899999999987 4332111 111 1111 46889999999998876 4 678999999953 332
Q ss_pred -eeeecC--CC--CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECC--Cc--eEEEEeecccccCCCCcccceeeEEEEE
Q 004789 611 -TSQLVP--DK--MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTS--TL--ELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 611 -~~~~~~--~~--h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~--~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
...+.. .. ....+..++|+|+|++|+++. .++.|++|++. ++ +.+..+. .+ . .+. +++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-------~~-~-~~~--~~~~ 284 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-------TE-T-QPR--GFNV 284 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-------CS-S-SCC--CEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-------CC-C-ccc--eEEE
Confidence 222221 11 134677899999999887554 78999999998 33 3333333 11 2 255 8999
Q ss_pred ecCCCCEEEEEe-CCCcEEEEeCC
Q 004789 681 HPLEPNRIALGL-TNGRVHVIEPL 703 (730)
Q Consensus 681 sp~~~~~las~s-~Dg~I~iWd~~ 703 (730)
+| ++++|++++ .|+.|.+|++.
T Consensus 285 s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 285 DH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CT-TSSEEEEECTTTCEEEEEEEE
T ss_pred CC-CCCEEEEecCCCCeEEEEEEc
Confidence 99 888888777 68999999554
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=5.9e-20 Score=194.81 Aligned_cols=269 Identities=10% Similarity=0.020 Sum_probs=199.3
Q ss_pred cCCCCCCCeeEeecC-------CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcEEEee
Q 004789 338 STSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 409 (730)
Q Consensus 338 ~~~spdg~~lat~~~-------dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I~iWd 409 (730)
..++|||+.+++++. ++.|.+||... ......+. ....+..++|+|+|+++++++. ++.|.+||
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIH-----NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEE-----ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEe-----cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 578999999988774 56899999863 22333333 2445788999999997666554 78999999
Q ss_pred cCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceEEEEEcCC
Q 004789 410 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANP 484 (730)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~~~~~~~~ 484 (730)
..+++.... +....+... .......+.+++|+ ++++++++ ++.|.+||..+++.+..+..+
T Consensus 118 ~~~~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 118 AKTGEVKGR----------LVLDDRKRT----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp TTTCCEEEE----------EESCCCCCC----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred CCCCeeEEE----------EecCCCccc----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 877654111 110000000 00011236789998 77666654 689999999999999998866
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcC----CCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCC
Q 004789 485 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW 558 (730)
Q Consensus 485 ~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~~~ 558 (730)
...+.+++|+|+| .+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+++++++++. ++.|.+||+.++
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 6678899999999 899999999999999999988877754 5567889999999998776665 589999999886
Q ss_pred ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 559 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
+...... .+ ....++|+|+|+++++ + .++.|.+||..+++.+..+.. ...+.+++|+|||++|+
T Consensus 264 ~~~~~~~-----~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 264 NILAKVA-----AP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLY 329 (353)
T ss_dssp CEEEEEE-----CS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEE
T ss_pred cEEEEEE-----cC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEE
Confidence 5432211 11 2246999999997776 4 579999999999998887764 45789999999999888
Q ss_pred EEEcCC
Q 004789 637 VSCKSG 642 (730)
Q Consensus 637 sgs~dg 642 (730)
++..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 877764
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.4e-19 Score=193.16 Aligned_cols=289 Identities=11% Similarity=0.099 Sum_probs=190.8
Q ss_pred cCCCCCCCeeEeec----CCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC----CcEEEee
Q 004789 338 STSLPDADSAVCAK----SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWK 409 (730)
Q Consensus 338 ~~~spdg~~lat~~----~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d----g~I~iWd 409 (730)
....++..++..|+ .++.|.+|+++.. ++....+... +...+..++|+|||++|++++.+ +.|.+|+
T Consensus 7 ~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~--~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 7 PSTTDSELTMLVGTYTSGNSKGIYTFRFNEE--TGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp CCGGGGEEEEEEEECCSSSCCEEEEEEEETT--TCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEE
T ss_pred hhhCCCceEEEEEeccCCCCCCEEEEEEeCC--CCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEE
Confidence 34445556666663 4678999998642 2333332211 56777889999999999999886 7999998
Q ss_pred cCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee--CCEEEEEEcCCceEEEE------E
Q 004789 410 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLAT------F 481 (730)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s--dg~I~vwd~~t~~~~~~------~ 481 (730)
+... ++.+........+......+++.+++|++++ ++.|.+|++.+...+.. .
T Consensus 82 ~~~~-------------------~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 142 (361)
T 3scy_A 82 FDKE-------------------KGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF 142 (361)
T ss_dssp EETT-------------------TTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC
T ss_pred EeCC-------------------CCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc
Confidence 7542 1111111000024445666777777777766 78999999975432211 1
Q ss_pred cC--------CCCCeEEEEEcCCC-eEEEEE-CCCcEEEEecCCCce------E-------EEEcCCCCCeEEEEEeCCC
Q 004789 482 AN--------PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT------K-------AKLKGHQNRITCLAYSLSL 538 (730)
Q Consensus 482 ~~--------~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~~~~~~------~-------~~~~~h~~~V~~l~~spd~ 538 (730)
.+ +...+.+++|+|+| ++++++ .++.|.+|++..... + .....+...+..++|+|||
T Consensus 143 ~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg 222 (361)
T 3scy_A 143 KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG 222 (361)
T ss_dssp CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence 11 12345889999999 666555 478999998875431 1 1122345668899999999
Q ss_pred CEEEEEe-CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e--cCcEEEEeCC--CCc--e
Q 004789 539 NVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H--EGQIDVYEAP--TLN--H 610 (730)
Q Consensus 539 ~~l~s~s-~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~--dg~I~iwd~~--~~~--~ 610 (730)
+++++++ .++.|.+||+.++.......+. ....+. .....++|+|||++|+++ . ++.|.+|++. +++ .
T Consensus 223 ~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~ 298 (361)
T 3scy_A 223 KFAYLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK 298 (361)
T ss_dssp SEEEEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE
T ss_pred CEEEEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE
Confidence 9887776 6899999999876433222232 122222 356899999999999774 3 4789999985 444 3
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEE--CCCceEEEE
Q 004789 611 TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFD--TSTLELRCQ 657 (730)
Q Consensus 611 ~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd--~~~~~~~~~ 657 (730)
+..+.. ...+..++|+|||++|++++ .++.|.+|+ ..++++...
T Consensus 299 ~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 299 VGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred eeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 333332 45678999999999999888 568999965 456765443
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.9e-20 Score=192.54 Aligned_cols=253 Identities=9% Similarity=-0.038 Sum_probs=182.2
Q ss_pred eecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCC-Cccccccccccceee
Q 004789 349 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMESQ 427 (730)
Q Consensus 349 t~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~-~~~~~~~~~~~~~~~ 427 (730)
.++.|++|++||+.. +....+. .|...|.+++|+|+|++|++++ ++.|.+||+.+ ++..
T Consensus 17 ~~~~~~~i~~~d~~~----~~~~~~~----~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~----------- 76 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT----RKMRVVW----QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE----------- 76 (297)
T ss_dssp -CCCCEEEEEEETTT----TEEEEEE----EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----------
T ss_pred CCCcceeEEEEeCCC----Cceeeec----cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----------
Confidence 356789999999963 3333332 2789999999999999999876 78999999877 5431
Q ss_pred EecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C----CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eE
Q 004789 428 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 499 (730)
Q Consensus 428 i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d----g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l 499 (730)
.. ....+...|.+++|+ +++|++++ + ..|..|+..++. ...+..+ ..+.+++|+|++ .|
T Consensus 77 ----------~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l 143 (297)
T 2ojh_A 77 ----------KV-DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSF 143 (297)
T ss_dssp ----------EC-CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEE
T ss_pred ----------Ee-ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEE
Confidence 10 111234678899999 88888887 3 355566666655 3344433 348899999999 65
Q ss_pred E-EEECCCcEEEEecCC-CceEEEEcCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCceecceeecccccCCCCC
Q 004789 500 A-FGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 500 ~-sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
+ +++.++.+.+|++.. +.....+..+...+.+++|+|+++.|++++ .++.+.+|++.... ..+. ....+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~-~~~~~~-- 216 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVE-RITDSA-- 216 (297)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEE-ECCCCS--
T ss_pred EEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcE-EEecCC--
Confidence 5 788899999998532 234456667888999999999999888766 58999999886311 1222 223343
Q ss_pred CCCeEEEEEecCCcEEEE-Eec-----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 004789 577 TTIVNHIQFHPDQIHLLS-IHE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 642 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s~d-----------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg 642 (730)
..+..++|+|+|++|++ +.+ +.|++||+.+++.........|...+.+++|+|+|++|++++.+.
T Consensus 217 -~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 -YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 57889999999999988 444 569999998876543333223577889999999999999887764
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=2.4e-21 Score=227.00 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=196.7
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCC---CeeEEEEe--C
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--G 456 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~---~V~~l~~s--~ 456 (730)
..+.+++|+|||+++++ +.||+|++||+.+++... .. .+|.. .|.+++|+ |
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~------------------~~-----~~~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV------------------LI-----EGKKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE------------------EE-----CTTTTTTTTCSEEEECTTS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE------------------Ee-----ccccccccccceEEECCCC
Confidence 44678999999997766 789999999987765411 01 12333 48999999 8
Q ss_pred cEEEEee-C---------CEEEEEEcCCceEEEEEc---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE
Q 004789 457 SHLFSAS-G---------GKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 522 (730)
Q Consensus 457 ~~l~s~s-d---------g~I~vwd~~t~~~~~~~~---~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~ 522 (730)
++|++++ + +.|++||+.+++. ..+. .|...+.+++||||| .|+.++. +.|++||+.+++.....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 9999887 3 7899999999876 3343 344458899999999 8888886 79999999998877666
Q ss_pred cCCCCCe------------------EEEEEeCCCCEEEEEeCCC----------------------------------cE
Q 004789 523 KGHQNRI------------------TCLAYSLSLNVLVSSGADA----------------------------------QL 550 (730)
Q Consensus 523 ~~h~~~V------------------~~l~~spd~~~l~s~s~dg----------------------------------~I 550 (730)
..+...+ .+++|+|||++|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999887553 79
Q ss_pred EEEEcCCCceecceeecc--cccCCCCCCCCeEEEEEecCCcEEEEE-e----cCcEEEEeCCCCceeeeecCCCCCCCe
Q 004789 551 CVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTLNHTSQLVPDKMDLPI 623 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~--~~~~h~~~~~~v~~l~~spdg~~l~~s-~----dg~I~iwd~~~~~~~~~~~~~~h~~~v 623 (730)
++||+.+++.. ..+.. ....+. ..+..++|+|||+++++. . +..|++||+.+++....+.. .+...+
T Consensus 231 ~~~d~~~~~~~--~~l~~~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~ 304 (723)
T 1xfd_A 231 HVIGLNGPTHD--LEMMPPDDPRMRE---YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWL 304 (723)
T ss_dssp EEEESSSSCCC--EECCCCCCGGGSS---EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCC
T ss_pred EEEECCCCcee--EEeeCCccCCCcc---ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-ccCCEE
Confidence 99999885421 11110 011122 578899999999988763 2 25699999998887655532 123333
Q ss_pred ----EEEEEecCCCEEEE--EEcCC------eEEEEE-CCCceE--EEEeecccccCCCCcccceeeEEEEEecCCCCEE
Q 004789 624 ----TYATYSCDGKCIYV--SCKSG------HVKVFD-TSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 688 (730)
Q Consensus 624 ----~~~~~spdg~~l~s--gs~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~l 688 (730)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+.. |+ . .+. ..++|+| +++.|
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~~-~-~~~-~~~~~sp-dg~~l 374 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------GD-W-DVT-KILAYDE-KGNKI 374 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------SS-S-CEE-EEEEEET-TTTEE
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------CC-e-EEE-eeeEEcC-CCCEE
Confidence 37899999997775 44566 577777 444441 222221 22 2 233 1368999 88888
Q ss_pred EEEeCC---CcEEEEeCCC
Q 004789 689 ALGLTN---GRVHVIEPLE 704 (730)
Q Consensus 689 as~s~D---g~I~iWd~~~ 704 (730)
+..+.+ +.+++|++..
T Consensus 375 ~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEESSSCTTCCEEEEECS
T ss_pred EEEEcCCCCcceEEEEEeC
Confidence 766554 7899999864
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=3.9e-19 Score=194.62 Aligned_cols=312 Identities=12% Similarity=0.062 Sum_probs=199.1
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
....++.+++++++.++++++.++ +++|+........... .....+........+ .+...|.+++|+ |+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG--DDPNKIVDKVQGLLV------PMKFPIHHLALSCDNL 105 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT--CCTTCEEECCCCEEE------CCSSCEEEEEECTTSC
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc--cCcccccccCccccc------cCCCcccEEEEcCCCC
Confidence 345688899999999999999888 8888764321100000 000001111111111 367789999999 88
Q ss_pred EEE----Eee-CCEEEEEEcCCc--------e---EEEEEcCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEecCCCceE
Q 004789 458 HLF----SAS-GGKISIFSLETF--------Q---TLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 458 ~l~----s~s-dg~I~vwd~~t~--------~---~~~~~~~~~~~v~~i~~spd-g-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
+|+ +++ |+.|++||+.++ + ....+.+|...|.+++|+|+ + .|++|+.||+|++||++++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 888 677 899999998765 2 24556678999999999998 5 9999999999999999999777
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecc-cccCCCCCCCCeEEEEEecCCcEEEE-E-e
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-I-H 596 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~-~~~~h~~~~~~v~~l~~spdg~~l~~-s-~ 596 (730)
....+|...|++++|+|+|++|++|+.||.|++||++. +......... ....|. ..|.+++|++++.++++ + .
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEET
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCc---eeEEEEEEecCceEEEEEccC
Confidence 77777999999999999999999999999999999983 2221111110 001222 47999999999988876 3 3
Q ss_pred cC------cEEEEeCCCCc-----eeeeecCC-----CCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCc---eEEE
Q 004789 597 EG------QIDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTL---ELRC 656 (730)
Q Consensus 597 dg------~I~iwd~~~~~-----~~~~~~~~-----~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~---~~~~ 656 (730)
+| .+++|++++.+ ....+... ....+...+.+-++.+++++++. .+.|.|...... -...
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 43 28999998652 11121111 11223333444477777776665 455777765432 1111
Q ss_pred Eeec--ccccCCCCcccceeeEEEEE--ecCC------------CCEEEEEeCCCcEEEEeCCC
Q 004789 657 QINL--TAYAQPGTISLELYPLVIAA--HPLE------------PNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 657 ~~~~--~~~~~~gh~~~~v~~~~v~~--sp~~------------~~~las~s~Dg~I~iWd~~~ 704 (730)
.+.- ...+|.........++++++ +..+ ...|..-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1110 01111111112223333333 2211 24678888999999999865
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.3e-20 Score=193.83 Aligned_cols=252 Identities=10% Similarity=0.006 Sum_probs=184.3
Q ss_pred EeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCC-c
Q 004789 399 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-F 475 (730)
Q Consensus 399 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t-~ 475 (730)
++.|+.|++||+.+++. .... .|...|.+++|+ |++|++++++.|++||+.+ +
T Consensus 18 ~~~~~~i~~~d~~~~~~---------------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM---------------------RVVW---QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP 73 (297)
T ss_dssp CCCCEEEEEEETTTTEE---------------------EEEE---EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC
T ss_pred CCcceeEEEEeCCCCce---------------------eeec---cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC
Confidence 34678899998766543 1111 377899999999 8899998899999999999 8
Q ss_pred eEEEEEcCC-CCCeEEEEEcCCC-eEEEEEC--CC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEE-EEeCCC
Q 004789 476 QTLATFANP-PPIATYFILLPQD-LFAFGFD--DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADA 548 (730)
Q Consensus 476 ~~~~~~~~~-~~~v~~i~~spdg-~l~sgs~--dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~s~dg 548 (730)
+.......+ ...+.+++|+|+| .|++++. ++ .|..|+..++. ...+..+ ..+..++|+|+++.|+ +++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 74 SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence 877766665 3678899999999 8888883 33 45555555554 3445434 3489999999999887 677899
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC-CCceeeeecCCCCCCCeEE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY 625 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~ 625 (730)
.+.+|+++... .... ....+. ..+.+++|+|+|+++++ + .++.+++|++. .+..+..+.. +...+.+
T Consensus 152 ~~~l~~~~~~~----~~~~-~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~ 221 (297)
T 2ojh_A 152 VFDIYSMDIDS----GVET-RLTHGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWF 221 (297)
T ss_dssp EEEEEEEETTT----CCEE-ECCCSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEE
T ss_pred ceEEEEEECCC----Ccce-EcccCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCC
Confidence 99999864311 1111 122333 57999999999998887 4 47889999875 4455555543 4678899
Q ss_pred EEEecCCCEEEEEEcC-----------CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC
Q 004789 626 ATYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 694 (730)
Q Consensus 626 ~~~spdg~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D 694 (730)
++|+|+|++|++++.+ +.|++||+.+++........ +| ...+. .++|+| ++++|++++.|
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~-~~~~~--~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GG-QGTMN--SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ES-TTTSC--SCCBCT-TSSEEEEEEEC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CC-Ccccc--cceECC-CCCEEEEEEec
Confidence 9999999999988876 56999999988754433221 33 44567 889999 88988888765
Q ss_pred C
Q 004789 695 G 695 (730)
Q Consensus 695 g 695 (730)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 3
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=4.5e-19 Score=188.06 Aligned_cols=245 Identities=14% Similarity=0.104 Sum_probs=167.6
Q ss_pred CCCCeeEEEEe--CcEEEEee----CCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEecC
Q 004789 445 PKDSISCFALR--GSHLFSAS----GGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC 514 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s----dg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~~ 514 (730)
+...+..++|+ |+ |++++ ++.|.+|++.+++ .+..+..+...+..++|+|+| .|++++ .++.|.+||+.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 44667789999 66 55554 3799999998776 444445567778899999999 788877 67899999996
Q ss_pred C-C--ceEEEEcC---------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCceecceeecccccCCCCCCCCeE
Q 004789 515 T-K--KTKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVN 581 (730)
Q Consensus 515 ~-~--~~~~~~~~---------h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~-~~~~~~~~~i~~~~~~h~~~~~~v~ 581 (730)
. + ..+..+.. +...+.+++|+|+|+.+++...++.|.+||+. +++......+. ...+ ..+.
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g-----~~p~ 190 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-MEAG-----FGPR 190 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-CCTT-----CCEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-cCCC-----CCCc
Confidence 3 3 23333321 12348899999999966666678899999998 44322111111 1111 3578
Q ss_pred EEEEecCCcEEEE-E-ecCcEEEEeCCC--Cce--eeeecCCCC----CCCeEEEEEecCCCEEE-EEEcCCeEEEEECC
Q 004789 582 HIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCIY-VSCKSGHVKVFDTS 650 (730)
Q Consensus 582 ~l~~spdg~~l~~-s-~dg~I~iwd~~~--~~~--~~~~~~~~h----~~~v~~~~~spdg~~l~-sgs~dg~I~iwd~~ 650 (730)
.++|+|||+++++ + .++.|.+|++.. ++. +..+..... ...+..++|+|||++|+ ++..++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999998877 4 578899999874 443 222222111 14588999999999885 45568999999997
Q ss_pred C-c--eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC-CCcEEEE--eCCCCce
Q 004789 651 T-L--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVI--EPLESEV 707 (730)
Q Consensus 651 ~-~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~-Dg~I~iW--d~~~~~~ 707 (730)
. + +.+..+. .+ ...+. .++|+| ++++|++++. ++.|.+| |..+++.
T Consensus 271 ~~g~~~~~~~~~-------~~-~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 271 ADGHLTLIQQIS-------TE-GDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp GGGCEEEEEEEE-------CS-SSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCcEEEeEEEe-------cC-CCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 3 2 3333333 11 22355 899999 8998887775 4899999 5555654
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.1e-20 Score=218.90 Aligned_cols=320 Identities=11% Similarity=0.041 Sum_probs=216.0
Q ss_pred cccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCC---cEEEEEEecCCCEEEEEeC---------CC
Q 004789 336 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ---------TA 403 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~---~V~~v~fspdg~~L~s~s~---------dg 403 (730)
.+..++|||++++++ .|++|++||+.. +....+.- +|.. .|.+++|||||++|++++. ++
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~----g~~~~~~~---~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIET----GQSYTILS---NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSS----CCEEEEEC---HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCC----CcEEEEEc---cccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 346789999766655 589999999963 34444331 1222 3899999999999999876 68
Q ss_pred cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEEE
Q 004789 404 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATF 481 (730)
Q Consensus 404 ~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~~ 481 (730)
.|++||+.+++.... . .....+.+++|+ |+.|+++.++.|++||+.+++.....
T Consensus 91 ~i~~~d~~~g~~~~~------------------~------~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 91 TYYIYDLSNGEFVRG------------------N------ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EEEEEETTTTEECCS------------------S------CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECC
T ss_pred EEEEEECCCCccccc------------------e------ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEe
Confidence 888888776543000 0 122458889999 89999999999999999988775433
Q ss_pred c-CCCCCe-----------------EEEEEcCCC-eEEEEECCC----------------------------------cE
Q 004789 482 A-NPPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------SI 508 (730)
Q Consensus 482 ~-~~~~~v-----------------~~i~~spdg-~l~sgs~dg----------------------------------~I 508 (730)
. ++...| .+++|+||| .|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 2 222222 489999999 888887552 78
Q ss_pred EEEecCCCceE---E-----EEcCCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEE----cCCCceecceeecccc--
Q 004789 509 LVHCPCTKKTK---A-----KLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWD----AVGWKKLCSKFLHSFQ-- 570 (730)
Q Consensus 509 ~iwd~~~~~~~---~-----~~~~h~~~V~~l~~spd~~~l~s~s~d----g~I~vwd----~~~~~~~~~~~i~~~~-- 570 (730)
++||+.+++.. . .+.+|...+.+++|+||++++++.... ..|.+|| +.+++. .. +.
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-----~~-~~~~ 300 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-----PK-TQEH 300 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-----CG-GGEE
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-----EE-EEec
Confidence 89999988653 1 133578889999999998777664432 2488899 766432 12 22
Q ss_pred --cCCCCCCCCeE-----EEEEecCCcEEEE--E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 004789 571 --TGLVPETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 571 --~~h~~~~~~v~-----~l~~spdg~~l~~--s-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sg 638 (730)
.+|. +.+. .++|+|||+.++. + .+| .|++||+.+++ ...+.. +...+..+.++ +++.|+..
T Consensus 301 ~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 301 IEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp EEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-CSSEEEEE
T ss_pred ccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-eCCEEEEE
Confidence 3444 4555 7899999997654 3 334 58888887766 334432 35567888888 88877766
Q ss_pred EcC-----CeEEEEECCC--ceE-EEEeecccccCCCCcccceeeEEEEEecCCCCEEE-EEeCC--CcEEEEeCCCCce
Q 004789 639 CKS-----GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEV 707 (730)
Q Consensus 639 s~d-----g~I~iwd~~~--~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la-s~s~D--g~I~iWd~~~~~~ 707 (730)
+.+ +.+++|.+.. +.. ...+... ..++ ...+. .+.|+| ++++++ +++.+ ..+.+|++.+++.
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~~--~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQYY--TASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCBE--EEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCc---cCCC-CCceE--EEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 655 7888888754 421 2222210 0022 33355 789999 666655 44444 4789999988763
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=4.5e-19 Score=188.05 Aligned_cols=277 Identities=11% Similarity=0.051 Sum_probs=185.7
Q ss_pred cCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC---CCcEEEeecCCCccccccccccceee
Q 004789 351 KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQ 427 (730)
Q Consensus 351 ~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~---dg~I~iWd~~~~~~~~~~~~~~~~~~ 427 (730)
+.++.|.+|+++.. ++....+... .+...+..++|+|||+ |++++. ++.|.+|++.++...
T Consensus 13 ~~~~~i~v~~~d~~--tg~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~----------- 76 (347)
T 3hfq_A 13 KTSQGIYQGTLDTT--AKTLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH----------- 76 (347)
T ss_dssp SSCCEEEEEEEETT--TTEEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----------
T ss_pred CCCCCEEEEEEcCC--CCeEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----------
Confidence 34578999999742 3333332221 1567788899999999 666654 589999998654420
Q ss_pred EecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee--CCEEEEEEcC-Cc--eEEEEEcCC---------CCCeEEE
Q 004789 428 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE-TF--QTLATFANP---------PPIATYF 491 (730)
Q Consensus 428 i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~-t~--~~~~~~~~~---------~~~v~~i 491 (730)
.+.... .+...+..++|+ |++|++++ ++.|.+|++. ++ ..+..+... ...+.++
T Consensus 77 --------~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 77 --------KLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp --------EEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred --------Eeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 111100 256678899999 88888777 6899999996 33 334444321 2348899
Q ss_pred EEcCCC-eEEEEECCCcEEEEecC-CCceE--EEEcC-CCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Cceecc
Q 004789 492 ILLPQD-LFAFGFDDSSILVHCPC-TKKTK--AKLKG-HQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCS 563 (730)
Q Consensus 492 ~~spdg-~l~sgs~dg~I~iwd~~-~~~~~--~~~~~-h~~~V~~l~~spd~~~l~s-~s~dg~I~vwd~~~--~~~~~~ 563 (730)
+|+|+| .++++..++.|++||+. +++.. ..+.. ....+..++|+|||+++++ +..++.|.+|++.. ++....
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 999999 77877788999999998 55433 22222 2336788999999996665 55688999999874 332211
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC---ceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iwd~~~~---~~~~~~~~~~h~~~v~~~~~spdg~~l~sg 638 (730)
..+.....+.. ....+..++|+|||++|++ + .++.|.+||+... +.+..+.. +...+..++|+|||++|+++
T Consensus 227 ~~~~~~~~~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 227 GIVKTIPADYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEESSCTTCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEE
T ss_pred eeeeecCCCCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEE
Confidence 22221111100 0034788999999998876 3 5789999999732 34444433 35568899999999999888
Q ss_pred EcC-CeEEEE--ECCCceEEE
Q 004789 639 CKS-GHVKVF--DTSTLELRC 656 (730)
Q Consensus 639 s~d-g~I~iw--d~~~~~~~~ 656 (730)
+.+ +.|.+| |..++++..
T Consensus 304 ~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ETTTTEEEEEEECTTTCCEEE
T ss_pred EcCCCcEEEEEEeCCCCeEEe
Confidence 765 899999 556676553
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=4.2e-19 Score=187.76 Aligned_cols=286 Identities=12% Similarity=0.025 Sum_probs=190.0
Q ss_pred EEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEE-e
Q 004789 386 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS-A 462 (730)
Q Consensus 386 ~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s-~ 462 (730)
.+++++++.++++++.++.|.+||..+++. ...... +....+..++|+ |+++++ +
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCVM-PDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-SSCCSSCEEEECTTSSEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------EEEEec-CCCCCCceeEECCCCCEEEEEe
Confidence 356888999999999999999999876653 111110 122257789999 666554 4
Q ss_pred e-CCEEEEEEcCCceEEEEEcCCC------CCeEEEEEcCCC-eEEEEECC------------CcEEEEecCCCc---eE
Q 004789 463 S-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKK---TK 519 (730)
Q Consensus 463 s-dg~I~vwd~~t~~~~~~~~~~~------~~v~~i~~spdg-~l~sgs~d------------g~I~iwd~~~~~---~~ 519 (730)
. ++.|.+||+.+++....+..+. ..+.+++|+|+| .+++++.+ +.|.+||+.+++ .+
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 4 7999999999999888776432 236789999999 88888765 899999998854 33
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc--------------CCCC-CCCCeEEEE
Q 004789 520 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--------------GLVP-ETTIVNHIQ 584 (730)
Q Consensus 520 ~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~--------------~h~~-~~~~v~~l~ 584 (730)
..+. +...+.+++|+|+|+ +++++ +.|.+||+.+++............ +... .......++
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 4444 344688999999999 66554 349999998865433211110000 0000 000234566
Q ss_pred EecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCceEEEEeecc
Q 004789 585 FHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 585 ~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 661 (730)
+++++..... . ....+..+|..+++.. .+....+...+..++|+| +|++++++ ++.|++||+.+++.+..+..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~- 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL- 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEE-ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-
Confidence 7665533221 1 1112333555554422 221122466789999999 99999988 89999999999998777652
Q ss_pred cccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeecc
Q 004789 662 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~ 712 (730)
+ ..+. +++|+| ++++|++++.++.|++||+.+++......
T Consensus 294 -----~---~~~~--~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 294 -----D---HTYY--CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp -----S---SCCC--EEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred -----C---CCcc--ceEECC-CCCEEEEecCCCeEEEEeccccceeeeee
Confidence 2 2355 899999 78888888889999999999987665543
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.2e-19 Score=207.13 Aligned_cols=267 Identities=9% Similarity=0.010 Sum_probs=188.8
Q ss_pred CCCcEEEEEEecCCCEEEEEeC-CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~ 457 (730)
+..+|++++|+|||++||+++. ||+++||++.++.. .+.. .++...+..++|+ ++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---------------------~~lt--~~~~~~~~~~~~spd~ 76 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---------------------VKLN--REPINSVLDPHYGVGR 76 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---------------------EECC--SSCCSEECEECTTCSE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---------------------Eeee--cccccccccccCCCCe
Confidence 4568999999999999999887 99999998744332 2211 1233688999999 75
Q ss_pred EEEEee----CCEEEEEEcCC---ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCC
Q 004789 458 HLFSAS----GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 458 ~l~s~s----dg~I~vwd~~t---~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
.+++++ +....+|.+.. +... .+.... .+...+|+|+| .+++.+.++.+.+||+.+++.......+ .
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~- 152 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G- 152 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S-
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C-
Confidence 555444 24455554432 3332 343322 34467888888 4444455555669999988765555433 3
Q ss_pred eEEEEEeCCCCEEEEEeCC----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecC--cEE
Q 004789 529 ITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QID 601 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~d----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg--~I~ 601 (730)
.+++|+|||++|++++.+ +.|++||+.+++.. ...++. +.+..++|+|||+.|+++ .++ .|+
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-------~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-------VFDSGE---GSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-------EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-------EeecCC---CccccceECCCCCEEEEccCCCeeEEE
Confidence 789999999999988777 78999999885421 123444 578999999999999974 667 799
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEE--------EecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 602 VYEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~~h~~~v~~~~--------~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
+||+.+++.. .+. .+...+..++ |+|||.++++++.||.+++|++ |+..... .+.+
T Consensus 222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v 285 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNH 285 (582)
T ss_dssp EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEE
T ss_pred EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCce
Confidence 9999988776 443 3455566666 9999999999999999999999 6544311 2346
Q ss_pred eeEEEEEecCCCCEEEEEeCCC---cEEEEeCCC
Q 004789 674 YPLVIAAHPLEPNRIALGLTNG---RVHVIEPLE 704 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~Dg---~I~iWd~~~ 704 (730)
. +++|+ +++++++++.+. .|.+|+...
T Consensus 286 ~--~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 286 G--RVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp E--EEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred E--EEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 6 88888 578888888774 467777653
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=2.1e-19 Score=209.87 Aligned_cols=293 Identities=13% Similarity=0.109 Sum_probs=194.9
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc--ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 459 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l 459 (730)
.+..+.|+ |+.+++++.++ | +||+.+++. ........... .+....+. +. .+...|.+++|+ ++.+
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~-~l~~~~~~--~~----~~~~~v~~~~~spd~~~ 95 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA-LMPEGCKF--QT----TDAFPSFRTLDAGRGLV 95 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT-TC-----------------CCCEEEEETTTTEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh-hccchhcc--cc----ccccCceeEEECCCCeE
Confidence 34557788 66778888888 8 999988765 21100000000 00000000 00 133679999999 7777
Q ss_pred EEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC-----CceEEEEcCCCCC-----
Q 004789 460 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKGHQNR----- 528 (730)
Q Consensus 460 ~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~-----~~~~~~~~~h~~~----- 528 (730)
+.+.++.|++||+.+++.... ..+...+.+++|+||| .|+++ .|+.|++||+.+ ++.......+...
T Consensus 96 ~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 96 VLFTQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EEEETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EEEECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 777799999999998876544 4466778899999999 88875 679999999998 7766544444333
Q ss_pred ---------eEEEEEeCCCCEEEEEe---------------------------------CCCcEEEEEcCCCceecceee
Q 004789 529 ---------ITCLAYSLSLNVLVSSG---------------------------------ADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 529 ---------V~~l~~spd~~~l~s~s---------------------------------~dg~I~vwd~~~~~~~~~~~i 566 (730)
+.+++|+|||++|++++ .+..|++||+.+++.. .+
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~---~~ 250 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV---YL 250 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE---EC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE---ee
Confidence 48899999999999987 4467999999986432 11
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEE-EecC-----cEEEEeCCCCceeeeecCCCCC---CCeEEEEEec--CCCEE
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSC--DGKCI 635 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg-----~I~iwd~~~~~~~~~~~~~~h~---~~v~~~~~sp--dg~~l 635 (730)
. ....+. ..+.+++|+|||++|++ +.++ .|++||+.+++....+....+. ..+.+++|+| ||+++
T Consensus 251 ~-~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 251 Q-TGEPKE---KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp C-CCSCTT---CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE
T ss_pred c-cCCCCc---eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE
Confidence 1 112343 57899999999999988 4554 8999999988444333321222 2346789999 99999
Q ss_pred EEEEcCCeEEEEECC-CceEEEEeecccccCCCCcccceeeEE-EEEecCCCCEEEEEe-CCC----cEEEEeCCCCc
Q 004789 636 YVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLV-IAAHPLEPNRIALGL-TNG----RVHVIEPLESE 706 (730)
Q Consensus 636 ~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~-v~~sp~~~~~las~s-~Dg----~I~iWd~~~~~ 706 (730)
++++.||.++||.+. ++.....+. ++ ...+. . ++|+| +++.|+.++ .++ .|..|++.+++
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~~~~l~-------~~-~~~v~--~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRLIRQVT-------KG-EWEVT--NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEECTTSSCEEEEEETTSCEEEECC-------CS-SSCEE--EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEccCCccEEEEEECCCCEEEecC-------CC-CeEEE--eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999999999999876 555555554 32 33344 4 79999 787766544 444 67777776664
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.6e-19 Score=204.19 Aligned_cols=261 Identities=11% Similarity=0.027 Sum_probs=188.4
Q ss_pred cCCCCCCCeeEeecC-CCcEEEEeecCCCCCcceeeeecCCCCCC-CcEEEEEEecCCCEEEEEeC---CCcEEEeecCC
Q 004789 338 STSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQ---TATHKLWKWQS 412 (730)
Q Consensus 338 ~~~spdg~~lat~~~-dg~i~lWd~~~~~~~~~~~~~~l~~~gh~-~~V~~v~fspdg~~L~s~s~---dg~I~iWd~~~ 412 (730)
..++|||+.||+++. ||+++||+++ ++...+++ .|. ..|.+++|||| +.+++++. +....+|.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLN----REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEE----TTEEEECC----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred eecCCCCCeEEEEEccCCceeEEEEc----CCCcEeee----cccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 468999999999887 9999999984 45555554 144 68999999999 77777765 45567765433
Q ss_pred CccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc--EEEEeeCCEEEEEEcCCceEEEEEcCCCCCe
Q 004789 413 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGKISIFSLETFQTLATFANPPPIA 488 (730)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~--~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v 488 (730)
. + ..+.. +.. ....+...+|+ |+ .++++.++.+.+||+.+++.......+.
T Consensus 98 ~----------------~-~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--- 152 (582)
T 3o4h_A 98 S----------------R-PGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--- 152 (582)
T ss_dssp T----------------S-TTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---
T ss_pred c----------------C-CCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---
Confidence 0 0 00111 111 11223344555 43 3444555566699999988766554333
Q ss_pred EEEEEcCCC-eEEEEECC----CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCcee
Q 004789 489 TYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKL 561 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~d----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg--~I~vwd~~~~~~~ 561 (730)
.+++|+||| .|++++.+ +.|++||+.+++.. .+..|.+.+.+++|+|||++|+++..++ .|++||+.+++..
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 789999999 88887776 78999999988764 6777888999999999999999888888 8999999986432
Q ss_pred cceeecccccCCCCCCCCeEEEE--------EecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~--------~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
...++. ..+..++ |+|||..+++ +.++.+++|++ ++.... ....+.+++|+ +|
T Consensus 232 -------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 232 -------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RG 293 (582)
T ss_dssp -------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TT
T ss_pred -------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CC
Confidence 223343 3555566 9999977776 48899999999 665542 24678899999 99
Q ss_pred CEEEEEEcCC---eEEEEECCC
Q 004789 633 KCIYVSCKSG---HVKVFDTST 651 (730)
Q Consensus 633 ~~l~sgs~dg---~I~iwd~~~ 651 (730)
+++++++.+. .+++|+..+
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 9999888874 477777654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=5.6e-18 Score=182.33 Aligned_cols=295 Identities=13% Similarity=0.049 Sum_probs=191.1
Q ss_pred CCCcEEE-----EEEecCCCEEEEEeC-CCc--EEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeE
Q 004789 380 FGGRVVR-----LIYSHSGDFLVALTQ-TAT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 451 (730)
Q Consensus 380 h~~~V~~-----v~fspdg~~L~s~s~-dg~--I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~ 451 (730)
|...... .+|||||++|+.++. ++. |.+||+.++ ...+... ++...+..
T Consensus 29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---------------------~~~~lt~--~~~~~~~~ 85 (388)
T 3pe7_A 29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---------------------VATQLTE--GRGDNTFG 85 (388)
T ss_dssp TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---------------------EEEECCC--SSCBCSSS
T ss_pred CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---------------------ceEEeee--CCCCCccc
Confidence 5555555 889999999999988 664 555555444 3333221 35455556
Q ss_pred EEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEE--EcCCC-eEEEE----------------------E
Q 004789 452 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI--LLPQD-LFAFG----------------------F 503 (730)
Q Consensus 452 l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~--~spdg-~l~sg----------------------s 503 (730)
++|+ |+.|+.++ ++.|++||+.+++....+..+...+.... ++|++ .++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 7899 88999998 88999999999988877776766554444 48999 66532 2
Q ss_pred CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEcCCCceecceeecccccCCCCC
Q 004789 504 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPE 576 (730)
Q Consensus 504 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~ 576 (730)
.+..|++||+.+++... +..+...+..++|+| ||+.|+.++.+ ..|.++|..++.. .. +......
T Consensus 166 ~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~~- 237 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RK---VKTHAEG- 237 (388)
T ss_dssp CCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EE---SCCCCTT-
T ss_pred CcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EE---eeeCCCC-
Confidence 34689999999886544 444667899999999 99998877653 3788888876321 11 2222210
Q ss_pred CCCeEEEEEecCCcEEEE-E-ecC----cEEEEeCCCCceeeeecCCCCC---CCeEEEEEecCCCEEEEE---------
Q 004789 577 TTIVNHIQFHPDQIHLLS-I-HEG----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVS--------- 638 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s-~dg----~I~iwd~~~~~~~~~~~~~~h~---~~v~~~~~spdg~~l~sg--------- 638 (730)
..+..++|+|||+.|+. + .++ .|++||+.+++.........+. ......+|+|||+.|+..
T Consensus 238 -~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 238 -ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp -EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred -cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 24778999999998866 4 222 3999999988753322211100 001123799999988754
Q ss_pred EcCCeEEEEECCCceEEEEeeccc-cc-CCCCcccceeeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceee
Q 004789 639 CKSGHVKVFDTSTLELRCQINLTA-YA-QPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEW 709 (730)
Q Consensus 639 s~dg~I~iwd~~~~~~~~~~~~~~-~~-~~gh~~~~v~~~~v~~sp~~~~~las~s-~Dg~I~iWd~~~~~~~w 709 (730)
..+..|++||+.+++......... .. ..+.....+. .++|+| +++.|+.++ .+|...||.+.-.+..|
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHP--HPSFTP-DDKQILFTSDVHGKPALYLATLPESVW 387 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCC--CCEECT-TSSEEEEEECTTSSCEEEEEECCGGGG
T ss_pred CCCCEEEEEeccCCceEEeccccCcccccccccccCCC--CccCCC-CCCEEEEEecCCCceeEEEEECChhcc
Confidence 446789999999987644332110 00 0000001244 789999 888777655 57888888776554443
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=5.6e-18 Score=179.06 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=189.3
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEE-eCCCcEEEeecCCCccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQS 416 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~-s~dg~I~iWd~~~~~~~ 416 (730)
...++++..+++++.+++|++||... ......+... ....+..++|+|+|++++++ +.++.|.+||+.+++..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~---~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT---TEEEEEEECS---SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCC---CcEEEEEecC---CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 46788999999999999999999863 2223333321 22257899999999976655 45789999998766541
Q ss_pred cccccccceeeEecCCCCeeEeecccCCC-----CCCeeEEEEe--CcEEEEee-C------------CEEEEEEcCCce
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS-G------------GKISIFSLETFQ 476 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h-----~~~V~~l~~s--~~~l~s~s-d------------g~I~vwd~~t~~ 476 (730)
.. .. . .+ ...+.+++|+ |+++++++ + +.|.+||+.+++
T Consensus 79 ~~----------~~----------~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 79 FH----------AN----------L--SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EE----------EE----------S--CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EE----------EE----------c--ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 11 00 0 11 2346788999 88888888 5 999999998854
Q ss_pred E---EEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCC-C-----------------------C
Q 004789 477 T---LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-N-----------------------R 528 (730)
Q Consensus 477 ~---~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~-----------------------~ 528 (730)
. +..+.. ...+.+++|+|+| .++ ++ +.|++||+.+++.+..+..+. . .
T Consensus 137 ~~~~~~~~~~-~~~~~~~~~s~dg~l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 137 EAKPVRTFPM-PRQVYLMRAADDGSLYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp GBCCSEEEEC-CSSCCCEEECTTSCEEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ccceeeeccC-CCcccceeECCCCcEEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 3 334443 3468899999999 444 33 349999999998887775432 0 2
Q ss_pred eEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec-CCcEEEEEecCcEEEEeCC
Q 004789 529 ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAP 606 (730)
Q Consensus 529 V~~l~~spd~~~l~s~s~-dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~s~dg~I~iwd~~ 606 (730)
...+++++++........ ...+..+|..+++... +. . ..+. ..+..++|+| ++++++++ ++.|.+||+.
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~---~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~ 283 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT---QE-F-ADLT---ELYFTGLRSPKDPNQIYGV-LNRLAKYDLK 283 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEE---EE-E-EECS---SCEEEEEECSSCTTEEEEE-ESEEEEEETT
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEe---cc-c-ccCC---CcceeeEecCCCCCEEEEE-cCeEEEEECc
Confidence 345666655422111000 1112224554433211 11 0 1122 4678999999 99999988 8999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
+++.+..+.. ...+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 284 ~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 284 QRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp TTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred cCeEEEEEcC---CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 9988877754 34577999999999999888899999999999998887763
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1e-16 Score=170.83 Aligned_cols=246 Identities=14% Similarity=0.116 Sum_probs=165.4
Q ss_pred CCCCeeEEEEe--CcEEEEee-C----CEEEEEEcCC--ceE--EEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEE
Q 004789 445 PKDSISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 511 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-d----g~I~vwd~~t--~~~--~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iw 511 (730)
+...+..++|+ |++|++++ + +.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 45667779999 88888888 4 7999998865 443 3444445666778888 67 666655 67899999
Q ss_pred ecCCCceEEE------EcC--------CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCce------ecce-eeccc
Q 004789 512 CPCTKKTKAK------LKG--------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK-FLHSF 569 (730)
Q Consensus 512 d~~~~~~~~~------~~~--------h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~~~~------~~~~-~i~~~ 569 (730)
++.....+.. ..+ +...+.+++|+|+|+++++++ .++.|.+|++..... .... .....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 111 123458899999999776555 578999999876431 1000 00001
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce--eeeecC-CCCCCCeEEEEEecCCCEEEEEEcC--C
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--G 642 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~--~~~~~~-~~h~~~v~~~~~spdg~~l~sgs~d--g 642 (730)
..... ..+..++|+|||++++++ .++.|.+||+.+++. +..+.. ..+......++|+|||++|+++..+ +
T Consensus 206 ~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPG---SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp ECCTT---CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ecCCC---CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11122 467899999999988874 578999999987654 222221 1224557899999999999877665 8
Q ss_pred eEEEEECC--CceEE--EEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe-CCCcEEEEeCC--CCce
Q 004789 643 HVKVFDTS--TLELR--CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPL--ESEV 707 (730)
Q Consensus 643 ~I~iwd~~--~~~~~--~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s-~Dg~I~iWd~~--~~~~ 707 (730)
.|.+|++. +++.. ..+. . ...+. .++|+| ++++|++++ .++.|.+|++. +++.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~-------~--g~~~~--~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQL-------T--GIHPR--NFIITP-NGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEE-------C--SSCCC--EEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEEEcCCCCcEEEeeEec-------C--CCCCc--eEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 99999996 45532 2222 1 22355 899999 899888877 67899996554 5544
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=3.8e-17 Score=191.69 Aligned_cols=321 Identities=9% Similarity=0.063 Sum_probs=205.2
Q ss_pred ccCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCC-----cEEEEEEecCCCEEEEEeCC---------
Q 004789 337 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVALTQT--------- 402 (730)
Q Consensus 337 ~~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~-----~V~~v~fspdg~~L~s~s~d--------- 402 (730)
...++|||++++++ |++|++||+.. +.+..+. . +|.. ....++|||||++|+.++.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~~-~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEY----GNSSVFL-E--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTT----CCEEEEE-C--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCC----CceEEEE-e--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 35889999999987 89999999963 3443332 2 2332 33458899999999998876
Q ss_pred CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEE
Q 004789 403 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLAT 480 (730)
Q Consensus 403 g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~ 480 (730)
+.+.+||+.++ ++.+. ..|...+..++|| |+.||.+.++.|++|++.+++..+.
T Consensus 92 ~~~~~~d~~~~---------------------~~~~l---~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 92 ASYDIYDLNKR---------------------QLITE---ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEETTTT---------------------EECCS---SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEEC
T ss_pred eEEEEEECCCC---------------------cEEEc---ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEE
Confidence 34446665544 33321 1467789999999 9999999999999999998876542
Q ss_pred E-cCCCCCe-----------------EEEEEcCCC-eEEEEECCC-----------------------------------
Q 004789 481 F-ANPPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------- 506 (730)
Q Consensus 481 ~-~~~~~~v-----------------~~i~~spdg-~l~sgs~dg----------------------------------- 506 (730)
. .++...+ ..+.||||| .|+.++.|.
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~ 227 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT 227 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence 2 2222222 348999999 888775322
Q ss_pred -cEEEEecCC---Cc--eEEEEc------CCCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCc----eecceee
Q 004789 507 -SILVHCPCT---KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWK----KLCSKFL 566 (730)
Q Consensus 507 -~I~iwd~~~---~~--~~~~~~------~h~~~V~~l~~spd~~~l~s~s~----dg~I~vwd~~~~~----~~~~~~i 566 (730)
.|++||+.+ ++ ....+. +|...+..++|+|||+.++.... +..|++||+.+++ ......+
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l 307 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence 488899988 73 233343 37788999999999997665432 3479999998865 2111111
Q ss_pred cccccCCCCCCCCeE-----EEEEecCCcEEE-E-E-ec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 567 HSFQTGLVPETTIVN-----HIQFHPDQIHLL-S-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~-----~l~~spdg~~l~-~-s-~d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
+..++. +.|. .++|+|||+.++ . + .+ ..|++||+.+++.. .+.. + ...+..+. ++|++.|+
T Consensus 308 --~~~~~~---~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~-g-~~~v~~~~-~~d~~~i~ 378 (740)
T 4a5s_A 308 --IEMSTT---GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK-G-TWEVIGIE-ALTSDYLY 378 (740)
T ss_dssp --EEECSS---SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC-S-SSCEEEEE-EECSSEEE
T ss_pred --eeccCC---ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc-C-CEEEEEEE-EEeCCEEE
Confidence 012333 3333 789999999887 4 4 33 35899999766554 4432 2 45566554 35566665
Q ss_pred EEEcC-----C--eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCc
Q 004789 637 VSCKS-----G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESE 706 (730)
Q Consensus 637 sgs~d-----g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D---g~I~iWd~~~~~ 706 (730)
..+.. + .|+..++.++.....+.... .+. ....+ .+.|+| ++++++..... ..+.+++..+++
T Consensus 379 f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~---~~~-~~~~~--~~~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 379 YISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL---NPE-RCQYY--SVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp EEESCGGGCTTCBEEEEEETTEEEEEEESSTTT---STT-TBCBE--EEEECT-TSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred EEEecCCCCCceeEEEEEECCCCCcceeecccc---CCC-CCceE--EEEECC-CCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 44432 3 45555665554332333110 011 23355 889999 78876644332 367888877664
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=4.9e-18 Score=185.88 Aligned_cols=251 Identities=13% Similarity=0.124 Sum_probs=171.0
Q ss_pred CCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCc----------eEEEE-----EcCCCCCeEEEEEcCCC-eEE----E
Q 004789 445 PKDSISCFALR--GSHLFSAS-GGKISIFSLETF----------QTLAT-----FANPPPIATYFILLPQD-LFA----F 501 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~----------~~~~~-----~~~~~~~v~~i~~spdg-~l~----s 501 (730)
+...+..++++ +.++++++ ++ +++|+.... ..+.. ...+...|.+++|+|+| +|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 34567888998 78888888 55 899875321 01111 11356679999999999 888 7
Q ss_pred EECCCcEEEEecCCC--------c---eEEEEcCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeeccc
Q 004789 502 GFDDSSILVHCPCTK--------K---TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 569 (730)
Q Consensus 502 gs~dg~I~iwd~~~~--------~---~~~~~~~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~ 569 (730)
|+.|+.|++||+.++ + .+..+.+|...|++++|+|+ +.+|++++.||+|++||++++.. +. .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~-~ 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VC-A 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EE-E
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----ee-e
Confidence 888999999998754 2 24556779999999999998 78999999999999999998532 21 1
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCC-----CCCCCeEEEEEecCCCEEEEEE-cCC
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSG 642 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~spdg~~l~sgs-~dg 642 (730)
..+|. ..|.+++|+|+|++|+++ .||.|++||++ ++....+..+ .|...+.+++|++++.++++.+ .||
T Consensus 188 ~~~~~---~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 188 TLPST---VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EECGG---GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred ccCCC---CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 23454 689999999999999994 89999999997 5555555432 1234799999999988876543 343
Q ss_pred ------eEEEEECCCce-----EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeee
Q 004789 643 ------HVKVFDTSTLE-----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 643 ------~I~iwd~~~~~-----~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~-s~Dg~I~iWd~~~~~~~w~ 710 (730)
.+++|++.+.+ ....+....|...+. ..+-+ .+.+.+ +.++++++ +..+.|.|.........|.
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~--~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~~ 339 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE-RQHHY--YLSYIE-EWDLVLAASAASTEVSILARQSDQINWE 339 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSS-SCCCE--EEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCEE
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCC-cCcce--eeehhc-cCCEEEEecCCCCceeEEEecCCCCccE
Confidence 38999998652 112222222211122 12222 455557 55665544 4556688887654333453
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=201.48 Aligned_cols=287 Identities=12% Similarity=0.013 Sum_probs=192.0
Q ss_pred cccCCCCCCCeeEeecC---------CCcEEEEeecCCCCCcce---eeeecCCCCCCCcEEEEEEecCCCEEEEEeCCC
Q 004789 336 RESTSLPDADSAVCAKS---------LEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 403 (730)
Q Consensus 336 ~~~~~spdg~~lat~~~---------dg~i~lWd~~~~~~~~~~---~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg 403 (730)
....+||||++||+++. +++|++||+.. ++. .. ....+.+++|||||++||+++ ++
T Consensus 63 ~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----g~~~~~~~-------l~~~~~~~~~SPDG~~la~~~-~~ 130 (719)
T 1z68_A 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----GEFVRGNE-------LPRPIQYLCWSPVGSKLAYVY-QN 130 (719)
T ss_dssp SEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----TEECCSSC-------CCSSBCCEEECSSTTCEEEEE-TT
T ss_pred eeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----Ccccccee-------cCcccccceECCCCCEEEEEE-CC
Confidence 34689999999998876 79999999963 333 22 235688999999999999885 78
Q ss_pred cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCC---------eeEEEEe--CcEEEEee-CC------
Q 004789 404 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS---------ISCFALR--GSHLFSAS-GG------ 465 (730)
Q Consensus 404 ~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~---------V~~l~~s--~~~l~s~s-dg------ 465 (730)
.|++|++.++...... .+.....+.. ++... ..+++|+ |++|++++ |.
T Consensus 131 ~i~~~~~~~g~~~~l~---------~~~~~~~v~~-----g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~ 196 (719)
T 1z68_A 131 NIYLKQRPGDPPFQIT---------FNGRENKIFN-----GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVI 196 (719)
T ss_dssp EEEEESSTTSCCEECC---------CCCBTTTEEE-----SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEE
T ss_pred eEEEEeCCCCCcEEEe---------cCCCcCCeEc-----ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceE
Confidence 9999998776541110 0000000000 23222 2589999 88999887 52
Q ss_pred ----------------------------EEEEEEcCCceEE---E-----EEcCCCCCeEEEEEcCCC-eEEEEECCC--
Q 004789 466 ----------------------------KISIFSLETFQTL---A-----TFANPPPIATYFILLPQD-LFAFGFDDS-- 506 (730)
Q Consensus 466 ----------------------------~I~vwd~~t~~~~---~-----~~~~~~~~v~~i~~spdg-~l~sgs~dg-- 506 (730)
.|++||+.+++.. . .+.+|...+.+++|+||+ .+++....+
T Consensus 197 ~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~ 276 (719)
T 1z68_A 197 AYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN 276 (719)
T ss_dssp EEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred EeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence 7899999988753 1 233577789999999999 766644332
Q ss_pred --cEEEEe----cCCCceEEEE----cCCCCCeE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCCceecceeec
Q 004789 507 --SILVHC----PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLH 567 (730)
Q Consensus 507 --~I~iwd----~~~~~~~~~~----~~h~~~V~-----~l~~spd~~~l~s--~s~dg--~I~vwd~~~~~~~~~~~i~ 567 (730)
.|.+|| +.++++...+ .+|...+. .++|+|||+.++. ...+| .|.+||+.+++. ..
T Consensus 277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~-- 351 (719)
T 1z68_A 277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQ-- 351 (719)
T ss_dssp EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EE--
T ss_pred eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Ee--
Confidence 488999 8877665544 36777776 8899999986554 44555 577778766431 11
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEEEeCCC--Cc-eeeeecC--CCCCCCeEEEEEecCCCEEE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAPT--LN-HTSQLVP--DKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d-----g~I~iwd~~~--~~-~~~~~~~--~~h~~~v~~~~~spdg~~l~ 636 (730)
+ ..+. ..+..+.++ +++.++. +.+ +.+++|.+.. +. ....+.. .++...+..+.|+|||++++
T Consensus 352 -l-t~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 352 -I-TSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp -C-SCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred -c-ccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 2 2222 457788888 8888877 443 6788887653 32 1223321 11456788999999998777
Q ss_pred EEE-cC--CeEEEEECCCceEEEEee
Q 004789 637 VSC-KS--GHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 637 sgs-~d--g~I~iwd~~~~~~~~~~~ 659 (730)
..+ .+ ..+++||+.+++.+..+.
T Consensus 426 ~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 426 LVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EEcCCCCCCeEEEEECCCCCEEEEee
Confidence 443 33 578999998888665554
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=9.1e-17 Score=171.83 Aligned_cols=282 Identities=7% Similarity=0.030 Sum_probs=181.4
Q ss_pred eEeecCC--CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecC-CCcccccccccc
Q 004789 347 AVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVN 423 (730)
Q Consensus 347 lat~~~d--g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~-~~~~~~~~~~~~ 423 (730)
+++|+.. +.|.+|+++. ..+....+.....+....+..++|+|+|++|++++.+ .|.+|++. +++.
T Consensus 5 ~~vg~~~~~~~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-------- 73 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-------- 73 (365)
T ss_dssp EEEEESSSSCEEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--------
T ss_pred EEEEEccCCCcEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--------
Confidence 4445442 5788888753 2333332221101134568889999999999999888 89999975 4432
Q ss_pred ceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE--EEEe--------------eCCEEEEEEcC-CceEEEEEc--
Q 004789 424 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA-- 482 (730)
Q Consensus 424 ~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~--l~s~--------------sdg~I~vwd~~-t~~~~~~~~-- 482 (730)
........+ +.+.+++|+ |++ ++++ .+|.+.+|++. +++....+.
T Consensus 74 -------------~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~ 139 (365)
T 1jof_A 74 -------------VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY 139 (365)
T ss_dssp -------------EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred -------------EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence 100000001 124456777 663 4444 47899999997 466554443
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEecC-CCceE--EEEc--CCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 004789 483 --NPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCV 552 (730)
Q Consensus 483 --~~~~~v~~i~~spdg-~l~sgs~-dg~I~iwd~~-~~~~~--~~~~--~h~~~V~~l~~spd~~~l~s~s~-dg~I~v 552 (730)
.+...+.+++|+||| ++++++. ++.|++||+. +++.. ..+. .|...+..++|+|||+++++++. ++.|.+
T Consensus 140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 255678999999999 7777664 6799999998 67643 3343 24567999999999999887765 689999
Q ss_pred EEcC--CCceec-ceeecccccCCCCCCC------CeEEEE-EecCCcEEEEE-e-cC-----cEEEEeCC-CCceeeee
Q 004789 553 WDAV--GWKKLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI-H-EG-----QIDVYEAP-TLNHTSQL 614 (730)
Q Consensus 553 wd~~--~~~~~~-~~~i~~~~~~h~~~~~------~v~~l~-~spdg~~l~~s-~-dg-----~I~iwd~~-~~~~~~~~ 614 (730)
|++. +++... ...+..+..+...... .+..++ |+|||++|+++ . ++ .|.+|++. +++.....
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 9875 343211 0112212111110001 478999 99999998874 3 33 89999996 56544311
Q ss_pred c-CCCCCCCeEEEEEec---CCCEEEEEEcC-CeEEEEECCCce
Q 004789 615 V-PDKMDLPITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE 653 (730)
Q Consensus 615 ~-~~~h~~~v~~~~~sp---dg~~l~sgs~d-g~I~iwd~~~~~ 653 (730)
. ...+...+..++|+| ||++|++++.+ +.|.+|+++...
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1 111244566789999 89999999875 899999988763
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.6e-16 Score=169.85 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=168.2
Q ss_pred CCCeeEEEEe--CcEEEEeeCCEEEEEEcC-CceEEEEEcCC-CCCeEEEEEcCCC-e-E-EEEE-------------CC
Q 004789 446 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFANP-PPIATYFILLPQD-L-F-AFGF-------------DD 505 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s~sdg~I~vwd~~-t~~~~~~~~~~-~~~v~~i~~spdg-~-l-~sgs-------------~d 505 (730)
...+..++|+ |++|++++.+.|.+|++. +++........ .+...+++|+|+| . + ++++ .+
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3467789999 888888883399999997 78765443211 1235568999999 5 3 3442 68
Q ss_pred CcEEEEecC-CCceEEEEc----CCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC-CCceecceeecccccCCCCCCC
Q 004789 506 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 506 g~I~iwd~~-~~~~~~~~~----~h~~~V~~l~~spd~~~l~s~s~-dg~I~vwd~~-~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
+.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++||+. +++......+. . ..+. .
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~-~~~g---~ 193 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-A-PDPG---D 193 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-C-SSTT---C
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-c-CCCC---C
Confidence 899999997 465544443 24567999999999998887654 6799999998 65432111111 1 1122 4
Q ss_pred CeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCcee---eeecCC-----CCCC------CeEEEE-EecCCCEEEEEE
Q 004789 579 IVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT---SQLVPD-----KMDL------PITYAT-YSCDGKCIYVSC 639 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s--~dg~I~iwd~~--~~~~~---~~~~~~-----~h~~------~v~~~~-~spdg~~l~sgs 639 (730)
.+..++|+|||++++++ .++.|.+|++. +++.. ..+... ++.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 68899999999999884 46889999765 45542 122211 1111 488999 999999998776
Q ss_pred cCC------eEEEEECC-CceEEEEeecccccCCCCcccceeeEEEEEecC--CCCEEEEEeCC-CcEEEEeCCCC
Q 004789 640 KSG------HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES 705 (730)
Q Consensus 640 ~dg------~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--~~~~las~s~D-g~I~iWd~~~~ 705 (730)
.+. .|.+|++. +++......... .+ ..... .++|+|. ++++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSP----TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEE----CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeee----cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 543 89999996 666543211000 11 22244 7889995 58899888764 89999999765
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=3.6e-17 Score=176.00 Aligned_cols=273 Identities=12% Similarity=0.059 Sum_probs=177.0
Q ss_pred cCCCCCCCeeEeecC-CCc--EEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 338 STSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 338 ~~~spdg~~lat~~~-dg~--i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
..+||||+.|+.++. ++. |.+||+. ++...+++ .+|...+..++|||||++|+.++.++.|++||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~----~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLN----TQVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETT----TCEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCC----CCceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 579999999998887 675 6666664 34454443 2355556678899999999999999999999988765
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE--e--CcEEEE----------------------ee-CCEE
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFS----------------------AS-GGKI 467 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~--s--~~~l~s----------------------~s-dg~I 467 (730)
... ++. .+...+....| + +.+++. .. ++.|
T Consensus 114 ~~~----------~~~-------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 114 ENV----------VYQ-------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp EEE----------EEE-------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred cee----------eee-------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 411 111 23333333333 3 555552 22 4789
Q ss_pred EEEEcCCceEEEEEcCCCCCeEEEEEcC-CC-eEEEEECC------CcEEEEecCCCceEEEEcCCC--CCeEEEEEeCC
Q 004789 468 SIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLS 537 (730)
Q Consensus 468 ~vwd~~t~~~~~~~~~~~~~v~~i~~sp-dg-~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~--~~V~~l~~spd 537 (730)
.+||+.+++.... ..+...+..++|+| || .|+.+..+ ..|.++|...+.. ..+..+. ..+..++|+||
T Consensus 171 ~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 171 MRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp EEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTT
T ss_pred EEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCC
Confidence 9999999875444 34666789999999 99 77776653 3788888876544 4444443 35788999999
Q ss_pred CCEEEEEeC-CC----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE----------ecCcEEE
Q 004789 538 LNVLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDV 602 (730)
Q Consensus 538 ~~~l~s~s~-dg----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s----------~dg~I~i 602 (730)
|+.|+..+. ++ .|++||+.+++........ ++.........++|+|||+.|+.. .+..|++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP----ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC----CEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC----CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 998765443 22 3999999987542211111 100000001124799999988862 2347999
Q ss_pred EeCCCCceeeeecCCCCCC-----------CeEEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004789 603 YEAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGHVKVFDT 649 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~-----------~v~~~~~spdg~~l~sgs~-dg~I~iwd~ 649 (730)
||+.+++.. .+..+ .. .+.+++|+|||+.|+.++. +|...||.+
T Consensus 325 ~d~~~~~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 325 FNMKNGTQH-RVARH--DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EETTTTEEE-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EeccCCceE-Eeccc--cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 999887653 34321 22 4788899999998886664 565555543
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.8e-16 Score=185.97 Aligned_cols=252 Identities=12% Similarity=0.146 Sum_probs=168.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
+.....+++|+|||++++++ |+.|++||+.+++... +....+. ..+......++|| |+
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV----------FLENSTF--------DEFGHSINDYSISPDGQ 74 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE----------EECTTTT--------TTCCSCCCEEEECTTSS
T ss_pred ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEE----------EEechhh--------hhhcccccceEECCCCC
Confidence 34456689999999988886 9999999988776411 1110000 0111223457888 88
Q ss_pred EEEEee-C---------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE-cCC
Q 004789 458 HLFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGH 525 (730)
Q Consensus 458 ~l~s~s-d---------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~-~~h 525 (730)
+|+.++ + +.+.+||+.+++.. .+..+...+...+||||| .||.+. ++.|++||+.+++..+.. .++
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC
Confidence 988888 4 67789999998864 466777889999999999 888874 689999999988754422 223
Q ss_pred CCCe-----------------EEEEEeCCCCEEEEEeCCC------------------------------------cEEE
Q 004789 526 QNRI-----------------TCLAYSLSLNVLVSSGADA------------------------------------QLCV 552 (730)
Q Consensus 526 ~~~V-----------------~~l~~spd~~~l~s~s~dg------------------------------------~I~v 552 (730)
...+ .++.|+|||+.|+.++.|. .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 2222 3589999999999875332 4777
Q ss_pred EEcCC---Cceecceeecc--cccCCCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCc----ee--eeecC
Q 004789 553 WDAVG---WKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLN----HT--SQLVP 616 (730)
Q Consensus 553 wd~~~---~~~~~~~~i~~--~~~~h~~~~~~v~~l~~spdg~~l~~-s~----dg~I~iwd~~~~~----~~--~~~~~ 616 (730)
||+.+ ++......+.. ...++. ..+..++|+|||+.++. .. +..|++||+.+++ +. ..+..
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~ 309 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGD---HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE 309 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSC---EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE
T ss_pred EECCCCCCCCcceEEEecCCccCCCCC---eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee
Confidence 88877 52111112210 011244 57899999999997765 32 2369999998887 22 22211
Q ss_pred CCCCCCeE-----EEEEecCCCEEE-EEEcC---CeEEEEECCCceEEE
Q 004789 617 DKMDLPIT-----YATYSCDGKCIY-VSCKS---GHVKVFDTSTLELRC 656 (730)
Q Consensus 617 ~~h~~~v~-----~~~~spdg~~l~-sgs~d---g~I~iwd~~~~~~~~ 656 (730)
..+...+. .++|+|||+.|+ ..+.+ ..|++||+.+++...
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 22344443 788999999877 66543 468899998876543
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=8.1e-16 Score=164.06 Aligned_cols=298 Identities=14% Similarity=0.081 Sum_probs=199.2
Q ss_pred CCCCeeEeec------CCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC----------CCcE
Q 004789 342 PDADSAVCAK------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH 405 (730)
Q Consensus 342 pdg~~lat~~------~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~----------dg~I 405 (730)
+|++++.+.. .|++|.+||.... .....+.. +..+ .++|+|||++|++++. ++.|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~---~~~~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNG---KFLGMVPT----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTC---CEEEEEEC----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCC---eEEEEecC----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 5777777653 4689999997532 22223221 3334 8999999999999873 5679
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceEEEE
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT 480 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~~~~ 480 (730)
.+||..+.+.... .....+.. .+......++++ |++|+++. ++.|.+||+.+++.+..
T Consensus 84 ~v~d~~t~~~~~~----------i~~~~~~~-------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 84 EVWDADKLTFEKE----------ISLPPKRV-------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEETTTCCEEEE----------EEECTTBC-------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEEECcCCcEEEE----------EEcCcccc-------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 9998776554111 00000000 123456778998 88888876 47899999999998888
Q ss_pred -EcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCC-CceEEE------EcCCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 004789 481 -FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAK------LKGHQNRITCLAYSLSLNVLVSSGADAQL 550 (730)
Q Consensus 481 -~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~-~~~~~~------~~~h~~~V~~l~~spd~~~l~s~s~dg~I 550 (730)
+... ....+.+.|++ .+++.+.||.+.+|+... ++.... +..+..++ .+.+++++..++..+.++.+
T Consensus 147 ~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 147 VTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp EGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred EecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence 6532 22336678887 788889999999999865 554422 12222222 33456778788888889999
Q ss_pred EEEEcCCCceecceeecc-----cccCCCCCCCCeEEEEEecCCcEEEEE-e-----------cCcEEEEeCCCCceeee
Q 004789 551 CVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~-----~~~~h~~~~~~v~~l~~spdg~~l~~s-~-----------dg~I~iwd~~~~~~~~~ 613 (730)
.++|+..........+.. ...+..+ .....++|+|+++.++++ . .+.|.+||+.+++.+.+
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCceecccccccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 999997643211111110 0001000 122247899998888874 3 24799999999999998
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 614 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
+..+ . +.+++|+|||++|++++. +.|.+||..++ +.+..+... | . .-+ .++++| +|.
T Consensus 302 i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G--~-~P~--~~~~~p-~G~ 360 (361)
T 2oiz_A 302 IPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A--E-ASL--QVQFHP-VGG 360 (361)
T ss_dssp EECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C--S-SEE--EEEECC-CSC
T ss_pred EecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C--C-CcE--EEEecC-CCC
Confidence 8753 3 999999999999999887 99999999999 888876421 2 2 234 789999 654
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.1e-16 Score=172.37 Aligned_cols=281 Identities=11% Similarity=0.035 Sum_probs=180.0
Q ss_pred CcEEEEEEecCCCEEEEEeCC-C--cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 382 GRVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~d-g--~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
..+.+++|||||++|+.++.. + .|.+|++.+++. .+... ++......+.|+ |
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~---------------------~~l~~--~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA---------------------VQLTE--GKGDNTFGGFISTDE 92 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE---------------------EECCC--SSCBCTTTCEECTTS
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE---------------------EEeec--CCCCccccceECCCC
Confidence 346778999999998877653 3 566666554432 22111 122223347788 8
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEE-------------------EEEcCCC-eEEEE-----ECCCcEEE
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATY-------------------FILLPQD-LFAFG-----FDDSSILV 510 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~-------------------i~~spdg-~l~sg-----s~dg~I~i 510 (730)
++|+.++ ++.|++||+.+++.......+...... +.|+|++ .++.+ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 8898888 789999999998877666655443322 3567777 44433 45668999
Q ss_pred EecCCCceEEEEcCCCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEE
Q 004789 511 HCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 511 wd~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+||+.+++. .. +...... ..+..+
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~~--~~~~~~ 243 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RK---IKEHAEG--ESCTHE 243 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EE---SSCCCTT--EEEEEE
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eE---eeccCCC--ccccce
Confidence 999988765544 4667899999999 78877766543 3688899876431 11 1121110 357889
Q ss_pred EEecCCcEEEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEE----------------c
Q 004789 584 QFHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------K 640 (730)
Q Consensus 584 ~~spdg~~l~~-s~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs----------------~ 640 (730)
+|+|||++|+. +.+ +.|++||+.+++....... . ... +.|+| ||+++++++ .
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 99999998776 433 3499999988765433321 1 123 89999 999888765 3
Q ss_pred CCeEEEEECCCceEEEEeecccccC---CCCcccceeeEEEEEecCCCCEEEEEeC-CCcEEEEeCC
Q 004789 641 SGHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPL 703 (730)
Q Consensus 641 dg~I~iwd~~~~~~~~~~~~~~~~~---~gh~~~~v~~~~v~~sp~~~~~las~s~-Dg~I~iWd~~ 703 (730)
++.|++||+.+++...... ..... .+.....+. .++|+| +++.|+.++. ++...||.+.
T Consensus 319 ~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~--~~~~s~-dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 319 DPFLYVLNTKAKSAQKLCK-HSTSWDVLDGDRQITHP--HPSFTP-NDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCEEEEEETTTTBCCEEEE-CCCCCCCBTTBSSTTCC--CCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred CCcEEEEecccCceEEccC-CCCccccccccccCCCC--CceEcc-CCCeEEEEecCCCCceEEEEE
Confidence 4789999999887543221 10000 000000133 678999 8888877664 5665565543
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=2.9e-14 Score=146.51 Aligned_cols=239 Identities=10% Similarity=0.076 Sum_probs=173.9
Q ss_pred CCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcC------CCCCeEEEEE-cCCC-eEEEEEC-CCcEEEE
Q 004789 444 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH 511 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~------~~~~v~~i~~-spdg-~l~sgs~-dg~I~iw 511 (730)
++-..+.+++++ ++++++.. ++.|.+||.. ++.+..+.. +...+.++++ .+++ .+++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 355678899998 77677666 8999999987 666666642 3357889999 4677 4444433 7899999
Q ss_pred ecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc-cCCCCCCCCeEEEEEecCC
Q 004789 512 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 512 d~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~-~~h~~~~~~v~~l~~spdg 589 (730)
| .+++.+..+.. +...+.+++++|+|+.+++...++.|.+||.... .+..+. .++. ..+..++++++|
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~~~~---~~p~~i~~~~~g 175 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFGCSKHL---EFPNGVVVNDKQ 175 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEECTTTC---SSEEEEEECSSS
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------EEEEeCCCCcc---CCcEEEEECCCC
Confidence 9 56777777643 4467899999999998888778899999997642 111111 1222 468899999999
Q ss_pred cEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEeecccccCCC
Q 004789 590 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG 667 (730)
Q Consensus 590 ~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~~~g 667 (730)
+.+++. .++.|++||. +++.+..+...++...+..++++++|+++++...++ .|.+|+.. ++.+..+... .
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~-----~ 248 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESK-----V 248 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEES-----S
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEccc-----C
Confidence 877664 6889999998 566666665433346789999999999888887776 99999964 5556555421 1
Q ss_pred CcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 668 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 668 h~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
. ...+. +++++| +++++++ +.|++|++|++...
T Consensus 249 ~-~~~~~--~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 K-HAQCF--DVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp C-CSCEE--EEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred C-CCcce--eEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1 12244 899999 7877777 57999999998654
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.8e-13 Score=153.71 Aligned_cols=325 Identities=11% Similarity=0.037 Sum_probs=220.8
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecC--CCccccc
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ--SNKQSLE 418 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~--~~~~~~~ 418 (730)
.|++..+++...+++|.++|... .....++. ....+..++|||||+++++++.|+.|.+||+. +.+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t---~~v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--- 232 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGST---YEIKTVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--- 232 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTT---CCEEEEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---
T ss_pred CCCceEEEEeCCCCeEEEEECCC---CeEEEEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---
Confidence 35566777888899999999863 22333333 34567799999999999999999999999984 3332
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe------CcEEEEee--CCEEEEEEcCCceEEEEEcCC------
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP------ 484 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s------~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~------ 484 (730)
+.... .......++|+ |+++++++ +++|.++|..+.+.+..+...
T Consensus 233 ------------------v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 233 ------------------VAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp ------------------EEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred ------------------eEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 11111 12234567776 67888777 799999999999998887632
Q ss_pred -----CCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEE--EEcCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 004789 485 -----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWD 554 (730)
Q Consensus 485 -----~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd 554 (730)
...+..+..++++ .++....+|.|.++|..+.+.+. .+. ......++.|+|+|++++++. .++.|.++|
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVID 370 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence 2267889999988 56666677999999988764332 232 345677899999999887655 578999999
Q ss_pred cCCCceecceee-cccccCCCCCCCCeEEEEEecCCcEEE-EE--ecCcEEEEeCCC-------CceeeeecCCCCCCCe
Q 004789 555 AVGWKKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLL-SI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPI 623 (730)
Q Consensus 555 ~~~~~~~~~~~i-~~~~~~h~~~~~~v~~l~~spdg~~l~-~s--~dg~I~iwd~~~-------~~~~~~~~~~~h~~~v 623 (730)
+.+++......+ . ...|. +....+ ++|++..+. ++ .++.|.++|..+ .+.++++... ...-
T Consensus 371 ~~t~kl~~~i~vgg--~~Php---g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~ 442 (567)
T 1qks_A 371 TKEGKLVAIEDTGG--QTPHP---GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGS 442 (567)
T ss_dssp TTTTEEEEEEECSS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCC
T ss_pred CCCCcEEEEEeccC--cCCCC---ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCC
Confidence 999765433322 1 12232 222222 688755554 45 468999999987 6677777653 2333
Q ss_pred EEEEEecCCCEEEEEEc-------CCeEEEEECCCc-----eEE-EEeeccc--ccCCCCcccceeeEEEEEecCCCCEE
Q 004789 624 TYATYSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLTA--YAQPGTISLELYPLVIAAHPLEPNRI 688 (730)
Q Consensus 624 ~~~~~spdg~~l~sgs~-------dg~I~iwd~~~~-----~~~-~~~~~~~--~~~~gh~~~~v~~~~v~~sp~~~~~l 688 (730)
..+..+|++++|++... .+.|.++|+.+. ... ..+.... -.+.| ...+. .+.|+| +|+.+
T Consensus 443 ~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~-~G~~~ 517 (567)
T 1qks_A 443 LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG--QPRVV--QGEFNK-DGTEV 517 (567)
T ss_dssp CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS--CCEEE--EEEECT-TSSEE
T ss_pred EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC--CcceE--eeeECC-CCCEE
Confidence 45678999999998763 359999999876 211 2222100 01111 23355 899999 78766
Q ss_pred EEEe-----CCCcEEEEeCCCCceeeec
Q 004789 689 ALGL-----TNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 689 as~s-----~Dg~I~iWd~~~~~~~w~~ 711 (730)
..+. .++.|.|+|..+++.+-..
T Consensus 518 ~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 518 WFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp EEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred EEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 5542 3799999999999765433
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=7.5e-15 Score=154.49 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=179.8
Q ss_pred CCCeeEEEEe--CcEEEEee-C------------------------CEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC
Q 004789 446 KDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQD 497 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s~s-d------------------------g~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg 497 (730)
-..+.+++++ |+++++.. + +.|.+||..+++.+..+. .+......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999 77777776 5 379999999999887765 344578899999999
Q ss_pred -eEEEEECCCcEEEEecCCCc-eEEEE---------cCCCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEEcCCCceecce
Q 004789 498 -LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 498 -~l~sgs~dg~I~iwd~~~~~-~~~~~---------~~h~~~V~~l~~sp-d~~~l~s~s-~dg~I~vwd~~~~~~~~~~ 564 (730)
.+++...++.|++||..... .+..+ .++......++++| +++.+++.+ .++.|++||... ....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~-- 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT-- 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE--
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE--
Confidence 88888888999999986542 55555 23455789999999 788888886 689999999544 2211
Q ss_pred eecccc------cCCCCCCCCeEEEEEecC-CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 565 FLHSFQ------TGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 565 ~i~~~~------~~h~~~~~~v~~l~~spd-g~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
.+...- .++. .....++++|+ +..+++. .++.|++||..+++.+..+....+...+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence 111000 0111 34789999998 5555554 67889999998899988886655677889999999 43333
Q ss_pred EE-------EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 637 VS-------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 637 sg-------s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
+. ..+..|++|+..+++.+..+... .++ ..... +++++| ++.++++...++.|++|++..
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~~-~~~p~--~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RKH-FDMPH--DIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCS----SSC-CSSEE--EEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC----CCc-cCCee--EEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 33 33458999999999988876421 022 22345 899999 788889999999999999864
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=3.1e-14 Score=146.22 Aligned_cols=243 Identities=10% Similarity=0.086 Sum_probs=176.0
Q ss_pred CCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe---
Q 004789 379 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 455 (730)
Q Consensus 379 gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 455 (730)
++-..+.+++++++|+++++.+.++.|.+||...... ..+... + ...++...+.++++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-----------~~~~~~-~------~~~~~~~~p~~i~~~~~~ 88 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGEC-G------KRDSQLLYPNRVAVVRNS 88 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------EEECCB-S------SSTTCBSSEEEEEEETTT
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-----------EEeccc-C------CCcccccCceEEEEEcCC
Confidence 3667899999999999878878889999998763221 111100 0 001344678899994
Q ss_pred CcEEEEee--CCEEEEEEcCCceEEEEEcC-CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc--CCCCCe
Q 004789 456 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRI 529 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t~~~~~~~~~-~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V 529 (730)
+.++++.. ++.|.+|| .+++.+..+.. +...+.+++++|+| .+++...++.|.+||.. ++.+..+. .+...+
T Consensus 89 g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 89 GDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 166 (286)
T ss_dssp TEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred CeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence 55555553 78999999 66777777753 34578999999999 77777778899999964 66666664 345678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc-cCCCCCCCCeEEEEEecCCcEEEEE-ecC-cEEEEeCC
Q 004789 530 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAP 606 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~-~~h~~~~~~v~~l~~spdg~~l~~s-~dg-~I~iwd~~ 606 (730)
.+++++++|+.+++.+.++.|++||.... .+..+. .++. ..+..++++++|+.+++. .++ .|.+||.
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~- 236 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ- 236 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-
Confidence 99999999998888788999999998652 122111 1222 368899999999888775 454 9999996
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
+++.+..+........+.+++++|+|+++++ +.|+.|++|+....
T Consensus 237 ~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 5777777755433445789999999987666 67999999997653
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.8e-15 Score=162.86 Aligned_cols=284 Identities=8% Similarity=0.004 Sum_probs=174.7
Q ss_pred ccCCCCCCCeeEeecCC---CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCC
Q 004789 337 ESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 413 (730)
Q Consensus 337 ~~~~spdg~~lat~~~d---g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~ 413 (730)
...+||||+.|+..... ..|.+|++. +++...+.. ++......+.|||||++|+.++.++.|.+|++.++
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~----~~~~~~l~~---~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLE----TQQAVQLTE---GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETT----TTEEEECCC---SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECC----CCcEEEeec---CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 36899999998876543 357777775 334444331 12222334789999999999999999999998776
Q ss_pred ccccc-cccccceeeEecCCCCeeEeecccCCCCCCeeE-----EEEe--CcEEEEe-----e-CCEEEEEEcCCceEEE
Q 004789 414 KQSLE-EENVNMESQLYQPSSKLVMTNDIAADPKDSISC-----FALR--GSHLFSA-----S-GGKISIFSLETFQTLA 479 (730)
Q Consensus 414 ~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~-----l~~s--~~~l~s~-----s-dg~I~vwd~~t~~~~~ 479 (730)
+.... ..... |.+. +..+. + ........ +.|+ ++.++.+ . +..|.+||+.+++...
T Consensus 113 ~~~~~~~~~~~-----~~~~-g~~l~--~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 113 EEQVIYTVDEE-----WKGY-GTWVA--N--SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp CEEEEEECCTT-----EEEE-EEEEE--C--TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred CcEEEEecccc-----cCCC-CCEEE--e--ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Confidence 54211 00000 1000 00000 0 00000000 1233 4444332 3 5689999999887655
Q ss_pred EEcCCCCCeEEEEEcC-CC-eEEEEECC------CcEEEEecCCCceEEEEcCC--CCCeEEEEEeCCCCEEEEEeCC--
Q 004789 480 TFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGAD-- 547 (730)
Q Consensus 480 ~~~~~~~~v~~i~~sp-dg-~l~sgs~d------g~I~iwd~~~~~~~~~~~~h--~~~V~~l~~spd~~~l~s~s~d-- 547 (730)
.. .+...+..+.|+| ++ .|+..+.+ ..|.+||+.+++.. .+..+ ...+..++|+|||+.|+.++.+
T Consensus 183 ~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 183 IH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred ec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 54 4667789999999 77 66666543 36889998766543 33333 2357889999999988776543
Q ss_pred ---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec-CCcEEEEEe-----------------cCcEEEEeCC
Q 004789 548 ---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIH-----------------EGQIDVYEAP 606 (730)
Q Consensus 548 ---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~s~-----------------dg~I~iwd~~ 606 (730)
+.|++||+.+++.. .+. .. .... +.|+| ||++++++. ++.|++||+.
T Consensus 261 ~~~~~l~~~d~~~g~~~---~l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 261 QTDRVIYKANPETLENE---EVM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TCCEEEEEECTTTCCEE---EEE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CccceEEEEECCCCCeE---Eee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 44999999885432 111 11 1233 89999 999888632 3679999998
Q ss_pred CCceeeeecCCCCCC-----------CeEEEEEecCCCEEEEEEc-CCe--EEEEECCCceE
Q 004789 607 TLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLEL 654 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~-----------~v~~~~~spdg~~l~sgs~-dg~--I~iwd~~~~~~ 654 (730)
+++.. .+... .. .+..++|+|||+.|+.++. ++. |+++++.++..
T Consensus 329 ~~~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 329 AKSAQ-KLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTBCC-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cCceE-EccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 77653 33321 22 2567889999998887765 344 55556666543
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=7e-15 Score=170.15 Aligned_cols=282 Identities=10% Similarity=-0.043 Sum_probs=181.3
Q ss_pred cCCCCCCCeeEee--cCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEE---------EEEEe--cCCCE-EEEEeC-C
Q 004789 338 STSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGDF-LVALTQ-T 402 (730)
Q Consensus 338 ~~~spdg~~lat~--~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~---------~v~fs--pdg~~-L~s~s~-d 402 (730)
..+++++-++++. +.++..+||.... .+...+++ +|...+. ...|+ |||++ |+.++. +
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRA---DGAEESAL----PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECT---TSCEEESS----CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECC---CCCcceeC----CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 4667777777777 6688999999742 33444443 2555555 56666 99998 776654 4
Q ss_pred CcEEEeecC--C-CccccccccccceeeEecCCCCeeEeeccc--CCCCCCeeEEEEe--CcEEEEee-C----------
Q 004789 403 ATHKLWKWQ--S-NKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-G---------- 464 (730)
Q Consensus 403 g~I~iWd~~--~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~h~~~V~~l~~s--~~~l~s~s-d---------- 464 (730)
..|.+|++. + +.. .+.... ..|...+.+++|+ |+.|++++ +
T Consensus 102 ~~l~~~~~~~~g~~~~---------------------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVP---------------------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CCEEEECTTSTTCCCC---------------------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred CeEEEEcCCCCCCCCC---------------------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 556555544 1 221 111000 0156678899999 88898887 6
Q ss_pred CEEEEEEcCC------ceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECC--------CcEEEEecC-CC---ceEEEEcC
Q 004789 465 GKISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-TK---KTKAKLKG 524 (730)
Q Consensus 465 g~I~vwd~~t------~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~d--------g~I~iwd~~-~~---~~~~~~~~ 524 (730)
..|++||+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|++||+. ++ +......+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999988 554 4454 556678889999999 88877754 379999999 56 44444445
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCceecceeecccccCCCCC-----CCCeEEEEEecCCcEEEEEec
Q 004789 525 HQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPE-----TTIVNHIQFHPDQIHLLSIHE 597 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~s~dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~-----~~~v~~l~~spdg~~l~~s~d 597 (730)
|...+..++|+|||+++++++.++ .|.+||+.+++.. . +...+... .-.+..++|+|++++++++.+
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-----~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-----Q-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-----E-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-----e-cccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 678899999999999888888888 5666676554321 1 11222100 001567899999998888633
Q ss_pred CcEEEE--eCCCCceeeeecCCCCCCCeEEE-EEecCCCEEEEEEcCC--eEEEEECCCceEEEE
Q 004789 598 GQIDVY--EAPTLNHTSQLVPDKMDLPITYA-TYSCDGKCIYVSCKSG--HVKVFDTSTLELRCQ 657 (730)
Q Consensus 598 g~I~iw--d~~~~~~~~~~~~~~h~~~v~~~-~~spdg~~l~sgs~dg--~I~iwd~~~~~~~~~ 657 (730)
+.++|| |+.+++ +..+.. +...+..+ +++.+.-++++++.+. .|++||+.+++....
T Consensus 314 ~~~~l~~~d~~~~~-~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 314 GAAVLGILDPESGE-LVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp SSCEEEEEETTTTE-EEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CccEEEEEECCCCc-EEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 888888 665555 555543 35556655 4433322333444443 577778878875544
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=7.1e-15 Score=170.12 Aligned_cols=283 Identities=12% Similarity=0.008 Sum_probs=184.7
Q ss_pred CCCcEEEEEEecCCCEEEEE--eCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCee-------
Q 004789 380 FGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS------- 450 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~--s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~------- 450 (730)
|...|..++|++++-++++. +.++...||....+.. ..+.. .+...+.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~l~---~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--------------------EESAL---PAPWNVRNRVFEYS 78 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--------------------EEESS---CTTCCBCCCGGGTC
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--------------------cceeC---CCCccccccccccC
Confidence 88999999999887766766 4578899998532221 11110 1323333
Q ss_pred --EEEEe----CcE-EEEee--CCEEEEEEcC--CceEEEEEcC-----CCCCeEEEEEcCCC-eEEEEECC--------
Q 004789 451 --CFALR----GSH-LFSAS--GGKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD-------- 505 (730)
Q Consensus 451 --~l~~s----~~~-l~s~s--dg~I~vwd~~--t~~~~~~~~~-----~~~~v~~i~~spdg-~l~sgs~d-------- 505 (730)
...|+ |+. |+.++ +..|.+|++. +......+.. |...+.+++|+||| .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 34343 777 77666 4677777775 3033445555 56678899999999 88888776
Q ss_pred --CcEEEEecCC------CceEEEEc-CCCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEcC-CCceecceeec
Q 004789 506 --SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAV-GWKKLCSKFLH 567 (730)
Q Consensus 506 --g~I~iwd~~~------~~~~~~~~-~h~~~V~~l~~spd~~~l~s~s~d--------g~I~vwd~~-~~~~~~~~~i~ 567 (730)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++... ...
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~ 234 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTR 234 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEE
T ss_pred ceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccE
Confidence 5899999987 554 4555 566778899999999999987755 379999998 44211 111
Q ss_pred ccccCCCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeCCCCceeeeecCCCCCCC--------eEEEEEecCCCEEE
Q 004789 568 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMDLP--------ITYATYSCDGKCIY 636 (730)
Q Consensus 568 ~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg--~I~iwd~~~~~~~~~~~~~~h~~~--------v~~~~~spdg~~l~ 636 (730)
.+..++. ..+..++|+|||++++++ .++ .|++||+.+++....... +... +..++|+|++++++
T Consensus 235 ~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 235 TLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred EeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEE
Confidence 1233333 578999999999966665 556 677888766665433221 1111 56789999999999
Q ss_pred EEEcCCeEEEE--ECCCceEEEEeecccccCCCCcccceeeEEE-EEecCCCCEEEEEeCCC--cEEEEeCCCCce
Q 004789 637 VSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV 707 (730)
Q Consensus 637 sgs~dg~I~iw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~~~~~las~s~Dg--~I~iWd~~~~~~ 707 (730)
+++. +.++|| |+.+++ +..+. ++ ...+. .+ ++++ +.-.+++++.+. .|.+|++.+++.
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~-------~~-~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAA-------GP-WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECC-------SS-CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEc-CccEEEEEECCCCc-EEEec-------CC-CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 9998 999999 666665 44443 33 33455 45 4443 222344455554 455666667654
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=4.8e-14 Score=148.27 Aligned_cols=261 Identities=11% Similarity=0.003 Sum_probs=180.7
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc---cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 455 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-- 455 (730)
-+.|.+++++|+|+.+++.+.++.+.+++......... .......+.+||..++++....- .++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 56799999999999888888776554444332221110 00011235677777776654322 1345678899999
Q ss_pred CcEEEEee-CCEEEEEEcCCce-EEEEE---------cCCCCCeEEEEEcC-CC-eEEEEE-CCCcEEEEecCCCceEEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 521 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~-~~~~~---------~~~~~~v~~i~~sp-dg-~l~sgs-~dg~I~iwd~~~~~~~~~ 521 (730)
|+++++.. ++.|++||..... .+..+ ..+......++++| ++ .+++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77777766 8999999986542 45555 23445688999999 67 666665 589999999 56777777
Q ss_pred EcC----------CCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 522 LKG----------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 522 ~~~----------h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
+.. +-.....++++|+ +.++++...++.|++||..+++.... +. ...+. ..+..++++| +.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~--~~--~~~~~---~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE--IK--HASFG---RNVFAISYIP-GF 252 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE--EC--CTTTT---TCEEEEEEET-TE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE--Ee--ccccC---CCcceeeecC-CE
Confidence 642 2234889999998 77777777889999999986543221 11 11222 4688999999 43
Q ss_pred EEEE-E-------ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 591 HLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 591 ~l~~-s-------~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
.+.+ + .+..|++||..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333 2 234799999999998887742 13467789999999998888888899999999753
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=6.9e-14 Score=147.03 Aligned_cols=240 Identities=10% Similarity=0.051 Sum_probs=174.0
Q ss_pred CCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc
Q 004789 447 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 523 (730)
Q Consensus 447 ~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~ 523 (730)
.....+++. +..+++.. ++.|.+||..+++.+.++. .......+++++++ .+++...++.|.+||..+++....+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 445678888 55555555 7999999999999999885 34667899999999 55554488999999999998887776
Q ss_pred CCC-----CCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-
Q 004789 524 GHQ-----NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 595 (730)
Q Consensus 524 ~h~-----~~V~~l~~spd~~~l~s~s--~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s- 595 (730)
... .....+++ ++..++++. .++.|.+||+.+++.... +..+ .....++++|+|++++++
T Consensus 123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~-----i~~g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDE-----LTIG-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEE-----EECS-----SCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEE-----EEcC-----CCccceEEcCCCCEEEEEC
Confidence 432 14567777 344555544 488999999998654322 2222 235678999999977774
Q ss_pred ec----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC
Q 004789 596 HE----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 665 (730)
Q Consensus 596 ~d----------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 665 (730)
.+ +.|.++|..+++....+.... ......++|+|+++.|+++.. .|++||..+++.... .+..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 33 689999999998877765421 347899999999999998754 899999998875311 1111
Q ss_pred CCCcccceeeEEEEEecCCCCEEEEE----eCCCcEEEEeCCCCceeeec
Q 004789 666 PGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 666 ~gh~~~~v~~~~v~~sp~~~~~las~----s~Dg~I~iWd~~~~~~~w~~ 711 (730)
.+ ....+ +++++|.++.++++. ..++.|.+|+.. ++..|..
T Consensus 264 ~~--~~~p~--gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 FR--DTKYY--GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CC--SSCEE--EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CC--CCceE--EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 11 22345 899999667777777 678999999998 8776654
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=4.9e-14 Score=148.14 Aligned_cols=272 Identities=11% Similarity=0.046 Sum_probs=182.8
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 458 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~ 458 (730)
...|++++|++++..++..+.++.++.|.- .. |. ... .+...+.+++|+ |++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~--------~~~--~~~~~~~~~~~~~~g~l 58 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITA---EP-------------WL--------EIS--KKGLQLEGLNFDRQGQL 58 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EE-------------EE--------EEE--SSCCCEEEEEECTTSCE
T ss_pred ccccceeeecCCccceeEEeecccCccccc---ce-------------eE--------EEe--ccCccccCcEECCCCCE
Confidence 345778889998887777777888888721 10 10 001 355667899999 776
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC----CcEEEEecCCCceEEEEc--CCCCCeE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRIT 530 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d----g~I~iwd~~~~~~~~~~~--~h~~~V~ 530 (730)
++++. ++.|.+||..+++.......+...+.+++++|+| .++++..+ +.|.+||..++.....+. .+...+.
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 66777 8999999999888766554567789999999999 66666655 689999998876654443 2446799
Q ss_pred EEEEeCCCCEEEEEeC------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEE
Q 004789 531 CLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV 602 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~i 602 (730)
+++++|+|+.+++... .+.|..+|..+++.. .+ ... . ..+..++|+|+|+.++++ .++.|++
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~---~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT---PI---IQN-I---SVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE---EE---EEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE---Ee---ecC-C---CcccceEECCCCCEEEEEeCCCCeEEE
Confidence 9999999988776653 245666666553221 11 111 1 357889999999877664 4688999
Q ss_pred EeCCC-Cceeeee------cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 603 YEAPT-LNHTSQL------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 603 wd~~~-~~~~~~~------~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
||+.+ +..+..+ .... ...+..++++++|+++++...++.|.+||. +++.+..+..... ..|+ ...+.
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~-~~~~~- 283 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH-MLRST- 283 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC-SCBCC-
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc-ccCcc-
Confidence 99964 3332211 1111 246788999999998888878899999998 4665555542100 0011 11355
Q ss_pred EEEEEecCCCCEEEEEeCCC
Q 004789 676 LVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 676 ~~v~~sp~~~~~las~s~Dg 695 (730)
+++|+| +++.|+.++.+|
T Consensus 284 -~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 284 -HPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp -EEEECT-TSCEEEEEEECG
T ss_pred -eEEECC-CCCEEEEEeCcc
Confidence 899998 776666555543
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=8.8e-14 Score=142.21 Aligned_cols=252 Identities=9% Similarity=0.004 Sum_probs=188.5
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCC-CCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCC-CCCeEE
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC 531 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~-~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~ 531 (730)
++.|++++ ++.|.+||.++|+.+.++..+. ..+.++.++|+| .++ +.++.|..||. +|+.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 67888888 9999999999999999998776 478899999999 666 45778999998 89999988864 357889
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 004789 532 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 609 (730)
Q Consensus 532 l~~spd~~~l~s~s~-dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~ 609 (730)
+.+.++|+++++.+. ++.|..+|. +++......+.....++. .....+++.++|+++++. .++.|..||.. ++
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 999999999999887 778888886 444333222221111111 235567789999999985 78999999997 99
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
.+.++.. ...+.++.+.++|+++++++.++.|..+|..+|+.+..+..... .+. .-..+..++..+ ++++++
T Consensus 157 ~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~--~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 157 LLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EGV--QLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp EEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BSC--CCSEEEEEEECT-TSCEEE
T ss_pred EEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CCc--cccccccceEcC-CCCEEE
Confidence 9888865 34566778889999999998889999999999999888763211 011 112234778888 888888
Q ss_pred EEeC--C------CcEEEEeC-CCCceeeeccCCCCCccccCC
Q 004789 690 LGLT--N------GRVHVIEP-LESEVEWGKLPFTDSREFSTT 723 (730)
Q Consensus 690 s~s~--D------g~I~iWd~-~~~~~~w~~~~~~~~~~~s~~ 723 (730)
+... . +..+++++ .+++..|......+-+..|.+
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 8742 1 24466666 588889998777776666654
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=1.5e-13 Score=145.13 Aligned_cols=254 Identities=9% Similarity=0.032 Sum_probs=170.9
Q ss_pred CCcEEEEEEecCCCEEEEEeC---------CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 451 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~---------dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~ 451 (730)
...+..+++ ||++++.... ++.|.+|++.+++ .... ..+..
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---------------------~~~l-------~~~~~ 63 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---------------------RRFI-------ENATM 63 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---------------------EEEE-------ESCEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---------------------eEEc-------ccCCC
Confidence 456777888 8998876532 3456666655443 2211 35778
Q ss_pred EEEe--CcEEEEee-C---C--EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC-----------------
Q 004789 452 FALR--GSHLFSAS-G---G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----------------- 505 (730)
Q Consensus 452 l~~s--~~~l~s~s-d---g--~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d----------------- 505 (730)
++|+ |++|+.++ + + .|.+||+.+++.......+. +.+++|+||| .|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 9999 88888877 3 3 48888998887766554433 9999999999 77776632
Q ss_pred ----------CcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC-------cEEEEEcCCCceecceeecc
Q 004789 506 ----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 506 ----------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg-------~I~vwd~~~~~~~~~~~i~~ 568 (730)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...+|.+.+++. ..+.
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~l~- 214 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EKMF- 214 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EEEE-
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EEec-
Confidence 5799999998877455554 3 78899999999 777775542 334444434321 1121
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEE-Eec--------CcEEEEeCCCCceeeeecCCCCCCCeEE-EEEecCCCEEEEE
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVS 638 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~-s~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~-~~~spdg~~l~sg 638 (730)
.+ . .+..+ +|||++|+. +.+ ..|++|| +++.. .+.. .+...+.. +.|+ || +++++
T Consensus 215 --~~-~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 215 --EK-V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp --EE-E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET-TE-EEEEE
T ss_pred --cC-c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc-Cc-EEEEE
Confidence 11 1 34444 999998887 433 3688888 55543 3332 34667776 8999 88 88999
Q ss_pred EcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcE-EEEeCC
Q 004789 639 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL 703 (730)
Q Consensus 639 s~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I-~iWd~~ 703 (730)
+.++.++|| +.+++....+. + ...|. +++|+| .++++++.++.. .||.+.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~--------~-~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAK--------G-RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEE-EESSSEEEEEC--------S-SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ecCCcEEEE-EcCCceEEEec--------C-CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999 87666543332 2 44566 889988 577777777765 777776
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.62 E-value=7.3e-12 Score=128.73 Aligned_cols=277 Identities=9% Similarity=0.019 Sum_probs=188.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
+...+.+++++++|+.+++...++.|.+||.. +.. ..+. . ..+...+.+++++ |.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----------~~~~----------~-~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----------TEYP----------L-PTPDAKVMCLTISSDGE 69 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----------EEEE----------C-SSTTCCEEEEEECTTSC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----------EEec----------C-CcccCceeeEEECCCCC
Confidence 56789999999999966665557889998866 332 0010 0 0234678899998 66
Q ss_pred EEEEee-CCEEEEEEcCCceEE-EEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE-EcCCCCCeEEEE
Q 004789 458 HLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLA 533 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~-~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~ 533 (730)
.+++.. ++.|..||.. ++.. ..+......+.++++.++| .+++...++.|..||. +++.... .......+.+++
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence 666666 7899999986 4332 2222345678999999999 6666666789999998 5554432 233456789999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~ 612 (730)
+.++|+..++...++.|..||. +++... +. ..... ..+..++++++|+..++. .++.|.+||. +++..
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~- 216 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITE---FK--IPTPA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT- 216 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEE---EE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee--CCCCC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-
Confidence 9999988887777789999998 543211 11 11112 468899999999876665 5788999999 66643
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+....+...+.+++++++|+++++...++.|..||. +++. ..+... ++ ...+. ++++ + ++.++++.+
T Consensus 217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-----~~-~~~~~--~i~~-~-~g~l~v~~~ 284 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-----IK-SAEPH--GICF-D-GETIWFAME 284 (299)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS-----SS-SCCEE--EEEE-C-SSCEEEEET
T ss_pred EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC-----CC-CCccc--eEEe-c-CCCEEEEec
Confidence 3332233577899999999996666657899999998 4543 233211 21 23355 7888 7 777777655
Q ss_pred CCCcEEEEeCCCC
Q 004789 693 TNGRVHVIEPLES 705 (730)
Q Consensus 693 ~Dg~I~iWd~~~~ 705 (730)
.+.|..+++.++
T Consensus 285 -~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 -CDKIGKLTLIKD 296 (299)
T ss_dssp -TTEEEEEEEC--
T ss_pred -CCcEEEEEcCcc
Confidence 577878887654
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=2.5e-14 Score=166.45 Aligned_cols=281 Identities=9% Similarity=-0.058 Sum_probs=177.6
Q ss_pred CCCCCCeeEeecCCC---cEEEEeecCCCCCcceeeeec---CCCCCCCcEEEEEEecCCCEEEEEeC-----CCcEEEe
Q 004789 340 SLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQ-----TATHKLW 408 (730)
Q Consensus 340 ~spdg~~lat~~~dg---~i~lWd~~~~~~~~~~~~~~l---~~~gh~~~V~~v~fspdg~~L~s~s~-----dg~I~iW 408 (730)
.+|||++++....++ .-.||..... .+....+.- ...+|...+..++|||||++||.+.. +..|++|
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGE--SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEEST--TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCC--CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 458999998776654 4667776521 222222221 11246678999999999999885432 3467776
Q ss_pred ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCe
Q 004789 409 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIA 488 (730)
Q Consensus 409 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v 488 (730)
|+.+++... . .+ +. ....
T Consensus 153 dl~tg~~~~--------------------~-----~~-----------------------------------~~--~~~~ 170 (695)
T 2bkl_A 153 DVDSGEWSK--------------------V-----DV-----------------------------------IE--GGKY 170 (695)
T ss_dssp ETTTCCBCS--------------------S-----CC-----------------------------------BS--CCTT
T ss_pred ECCCCCCcC--------------------C-----cc-----------------------------------cC--cccc
Confidence 665544300 0 00 00 0011
Q ss_pred EEEEEcCCC-eEEEEECCCc-------------EEEEecCCCc----eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC--
Q 004789 489 TYFILLPQD-LFAFGFDDSS-------------ILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLNVLVSSGADA-- 548 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~dg~-------------I~iwd~~~~~----~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg-- 548 (730)
..++|+||| .|+.++.|.. |++|++.++. .+.....+...+.++.|+|||++|+.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 467899999 8888877765 9999998875 3333334566889999999999998877665
Q ss_pred --cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCce--eeeecCCCC
Q 004789 549 --QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKM 619 (730)
Q Consensus 549 --~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~----dg~I~iwd~~~~~~--~~~~~~~~h 619 (730)
.|++||..+++. ..+ .. +. ..+....+ ++|. ++. +. ++.|.+||+.++.. ...+..+..
T Consensus 251 ~~~l~~~~~~~~~~---~~l---~~-~~---~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF---RLL---VK-GV---GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp EEEEEEECTTCSSC---EEE---EE-CS---SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred ceEEEEEcCCCCce---EEe---ec-CC---CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 677776654321 112 12 22 34555556 6777 555 43 47799999977653 234433222
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE-EE---eCC
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LG---LTN 694 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la-s~---s~D 694 (730)
...+..++|+ ++.++++...|+..+||.+. +++....+. .+..+.+. .++++| +++.++ +. ...
T Consensus 319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~--~~~~s~-d~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ-------LPGVGAAS--NLMGLE-DLDDAYYVFTSFTTP 387 (695)
T ss_dssp SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC-------CSSSSEEC--CCBSCT-TCSEEEEEEEETTEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec-------CCCCeEEE--EeecCC-CCCEEEEEEcCCCCC
Confidence 4567888888 77888999999988887654 354444443 22234455 778888 676665 33 245
Q ss_pred CcEEEEeCCCCce
Q 004789 695 GRVHVIEPLESEV 707 (730)
Q Consensus 695 g~I~iWd~~~~~~ 707 (730)
++|++||+.+++.
T Consensus 388 ~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 388 RQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTTCCE
T ss_pred CEEEEEECCCCcE
Confidence 7899999988764
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=4.2e-13 Score=156.52 Aligned_cols=242 Identities=9% Similarity=-0.036 Sum_probs=167.8
Q ss_pred CCCCCeeEEEEe--CcEEEEee-C-C----EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCc-------
Q 004789 444 DPKDSISCFALR--GSHLFSAS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS------- 507 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s-d-g----~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~------- 507 (730)
+|...+..++|| |++|+.+. + | .|++||+.+++.......+ ..+..++|+||| .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 354568899999 88888776 3 3 8999999999877643222 225679999999 8888887765
Q ss_pred ---------EEEEecCCCce--EEEEc--CCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCC------Cceecc
Q 004789 508 ---------ILVHCPCTKKT--KAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS 563 (730)
Q Consensus 508 ---------I~iwd~~~~~~--~~~~~--~h~~~V~~l~~spd~~~l~s~s~-----dg~I~vwd~~~------~~~~~~ 563 (730)
|++|++.+++. ...+. .|...+.++.|+|||++|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence 99999988752 22333 35566889999999999987764 56899999976 321
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec----CcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEecCCCEEE
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d----g~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~ 636 (730)
.+. ....+. ..+.. .|+|+|+.|+. +.. +.|.+||+.++. ....+..+.....+..++|++++.+++
T Consensus 278 -~~~-~l~~~~---~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 278 -KWV-KLIDNF---EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp -CCE-EEECSS---SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred -ceE-EeeCCC---CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 111 112222 23433 58899998887 432 359999998764 234444322123678899998888888
Q ss_pred EEEcCCe--EEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE-EEe---CCCcEEEEeCCCCc
Q 004789 637 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE 706 (730)
Q Consensus 637 sgs~dg~--I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la-s~s---~Dg~I~iWd~~~~~ 706 (730)
+...|+. |++|++.+|+.+..+. .+ .+.+. .++++| ++..++ +.+ ..++|+.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~-------~~-~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFP-------LE-VGSVV--GYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEEC-------CC-SSEEE--EEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecC-------CC-CceEE--EEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 9988884 6677876777666665 22 34455 888999 666554 333 35789999998876
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=9e-13 Score=153.74 Aligned_cols=279 Identities=12% Similarity=0.047 Sum_probs=183.6
Q ss_pred CCCCCeeEeecCCC---cEEEEeecCCCCCcceeeee---cCCCCCCCcEEEEEEecCCCEEEEEeCCC-----cEEEee
Q 004789 341 LPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLWK 409 (730)
Q Consensus 341 spdg~~lat~~~dg---~i~lWd~~~~~~~~~~~~~~---l~~~gh~~~V~~v~fspdg~~L~s~s~dg-----~I~iWd 409 (730)
+|||++++....++ .-.+|..+.. .+....+. ....+|...+..++|||||++||.++.++ .|++||
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d 157 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMK 157 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESST--TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 48999988665432 2256665421 11222111 00123556799999999999999876643 788888
Q ss_pred cCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCE----------------EEEE
Q 004789 410 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISIF 470 (730)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~----------------I~vw 470 (730)
+.+++. ..... ....+..++|+ |+.|+.++ ++. |++|
T Consensus 158 ~~tg~~---------------------~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 213 (710)
T 2xdw_A 158 VDGAKE---------------------LPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (710)
T ss_dssp TTTTEE---------------------EEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCCCCC---------------------Ccccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence 776653 11111 11226678999 78888877 654 9999
Q ss_pred EcCCceE--EEEEc--CCCCCeEEEEEcCCC-eEEEEEC-----CCcEEEEecCC------Cc-eEEEEcCCCCCeEEEE
Q 004789 471 SLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCLA 533 (730)
Q Consensus 471 d~~t~~~--~~~~~--~~~~~v~~i~~spdg-~l~sgs~-----dg~I~iwd~~~------~~-~~~~~~~h~~~V~~l~ 533 (730)
++.++.. ...+. .+...+..+.|+||| +|+.++. +..|++||+.+ +. ....+..+...+.. .
T Consensus 214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence 9988762 22233 345567899999999 7776654 56899999986 43 45666666666655 4
Q ss_pred EeCCCCEEEEEeCC----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeCC
Q 004789 534 YSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAP 606 (730)
Q Consensus 534 ~spd~~~l~s~s~d----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg--~I~iwd~~ 606 (730)
|+|+|+.|+..+.. +.|.+||+.++....... +...+.. ..+..++|++++..+++. .++ .|++||+.
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~ 367 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---LVPEHEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 367 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEETT
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---ccCCCCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEECC
Confidence 88899888776653 359999998753211111 1222110 257789999777776664 666 47778887
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCce
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLE 653 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~----dg~I~iwd~~~~~ 653 (730)
+++.+..+.. +...+..++++|++..++.... .+.|++||+.+++
T Consensus 368 ~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 368 TGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7877777654 3677888999999976664432 4799999999877
No 185
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=2.5e-13 Score=144.79 Aligned_cols=225 Identities=9% Similarity=-0.034 Sum_probs=149.8
Q ss_pred CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEE----------CCCcEEEEecCCCceEEEEcCC------C
Q 004789 464 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH------Q 526 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h------~ 526 (730)
|+.|.+||..+++.+..+..+..+ .++|+||| ++++++ .++.|.+||..+++.+..+... .
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 679999999999999888876554 89999999 777776 3568999999999888887532 2
Q ss_pred CCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecc-eeeccc----ccCCCCCCCCeEEEEEecCCcEE-------
Q 004789 527 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS-KFLHSF----QTGLVPETTIVNHIQFHPDQIHL------- 592 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~-~~i~~~----~~~h~~~~~~v~~l~~spdg~~l------- 592 (730)
.....++++|||++|+++.. ++.|.+||+.+++.... ...... .... +.-.-++++++|+.+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPN----RPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTT----SSSEEEEEETTSSEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCC----CCeeEEEECCCCcEEEEEECCC
Confidence 45678999999999998864 58999999998654322 111000 0000 001112222333222
Q ss_pred -------------------------------EE-EecCcEEEEeCCCCce--eeeecCCC----C----CCCeEEEEEec
Q 004789 593 -------------------------------LS-IHEGQIDVYEAPTLNH--TSQLVPDK----M----DLPITYATYSC 630 (730)
Q Consensus 593 -------------------------------~~-s~dg~I~iwd~~~~~~--~~~~~~~~----h----~~~v~~~~~sp 630 (730)
+. +.++.+.++|+..... ...+.... + ......++|+|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 22 2334455555543221 11111000 0 01111268999
Q ss_pred CCCEEEEEEc-----------CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEE
Q 004789 631 DGKCIYVSCK-----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 699 (730)
Q Consensus 631 dg~~l~sgs~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~i 699 (730)
+++.++++.. .+.|.+||+.+++.+..+. .+ . .+ +++|+| ++++|++++. +.|.+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-------~~-~--p~--~ia~sp-dg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-------GR-D--AL--SMTIDQ-QRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-------CT-T--CC--EEEEET-TTTEEEEECS-SCEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-------cC-C--ee--EEEECC-CCCEEEEeCC-CeEEE
Confidence 9988887754 3589999999999998886 32 2 56 999999 8999998886 99999
Q ss_pred EeCCCC--cee
Q 004789 700 IEPLES--EVE 708 (730)
Q Consensus 700 Wd~~~~--~~~ 708 (730)
||..++ +..
T Consensus 330 ~D~~t~~l~~~ 340 (361)
T 2oiz_A 330 YDISQPEPKLL 340 (361)
T ss_dssp EECSSSSCEEE
T ss_pred EECCCCcceee
Confidence 999998 654
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=3e-13 Score=142.81 Aligned_cols=248 Identities=11% Similarity=0.037 Sum_probs=161.5
Q ss_pred CCCeeEeec---------CCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCC---Cc--EEEe
Q 004789 343 DADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---AT--HKLW 408 (730)
Q Consensus 343 dg~~lat~~---------~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~d---g~--I~iW 408 (730)
||+.++... .++.|.+|++.. +....+ ..+..++|||||++|+.++.+ +. |.+|
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN----NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC----CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 899888652 256788888863 233332 457889999999999988764 34 5555
Q ss_pred ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C---------------------
Q 004789 409 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--------------------- 464 (730)
Q Consensus 409 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d--------------------- 464 (730)
++.+++ ..+... +.. +.+++|+ |+.|+.++ +
T Consensus 91 ~~~~g~---------------------~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 145 (347)
T 2gop_A 91 DLETLS---------------------SKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLG 145 (347)
T ss_dssp ETTTTE---------------------EEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-----
T ss_pred ECCCCc---------------------eEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcc
Confidence 554432 222211 223 8899998 78887776 3
Q ss_pred ------CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECC------C-cEEEEecCCCceEEEEcCCCCCeEE
Q 004789 465 ------GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD------S-SILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 465 ------g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~d------g-~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
..|++||+.+++.+..+.. . .+..++|+|||.++++..+ . ...+|.+.+++. ..+..+ ..+..
T Consensus 146 ~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~ 221 (347)
T 2gop_A 146 FFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYA 221 (347)
T ss_dssp ----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEE
T ss_pred cccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceee
Confidence 5799999999887455544 3 7889999999933444433 1 334443335544 344434 55555
Q ss_pred EEEeCCCCEEEEEeCC--------CcEEEEEcCCCceecceeecccccCCCCCCCCeEE-EEEecCCcEEEE-EecCcEE
Q 004789 532 LAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-IHEGQID 601 (730)
Q Consensus 532 l~~spd~~~l~s~s~d--------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~-l~~spdg~~l~~-s~dg~I~ 601 (730)
+ +|||++|+.++.+ ..|.+|| +++ ... +..++. ..+.. +.|+ |+ .+++ +.++.++
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~-l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMG-ILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEE-SSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEe-ccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 4 9999988877754 3688888 422 112 333444 56776 8999 88 6666 4788999
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE-EEEECCCce
Q 004789 602 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV-KVFDTSTLE 653 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I-~iwd~~~~~ 653 (730)
|| +.+++... +.. +...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 287 l~-~~~g~~~~-~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 287 LY-IWDGEIKP-IAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EE-EESSSEEE-EEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EE-EcCCceEE-Eec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 99 87665533 332 267789999999 677777777654 666665 54
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=1.6e-12 Score=136.48 Aligned_cols=266 Identities=10% Similarity=0.026 Sum_probs=180.4
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
..++|++..++..+.++.++.|.-. ....+. ++...+.+++|+|+|+.++++..++.|.+||..+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-- 78 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTITAE------PWLEIS----KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-- 78 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEECE------EEEEEE----SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--
T ss_pred eeecCCccceeEEeecccCcccccc------eeEEEe----ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE--
Confidence 5788888888888888999999321 223322 2566789999999999777788889999998766543
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-C----CEEEEEEcCCceEEEEEc--CCCCCe
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIA 488 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-d----g~I~vwd~~t~~~~~~~~--~~~~~v 488 (730)
..... .+...+.+++++ |+++++.. + +.|.+||..++.....+. .+...+
T Consensus 79 -------------------~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 79 -------------------KRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp -------------------EEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred -------------------EEEee--CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 11110 245679999998 66666665 5 599999998877654443 244578
Q ss_pred EEEEEcCCC-eEEEEEC------CCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCC-Cc
Q 004789 489 TYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVG-WK 559 (730)
Q Consensus 489 ~~i~~spdg-~l~sgs~------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~s~dg~I~vwd~~~-~~ 559 (730)
.+++++|+| .+++... .+.|..+|..+++..... .+...+..++|+|+++.++ +.+.++.|.+||+.+ +.
T Consensus 138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 999999999 5555443 356777776655543322 2334688999999998665 445678999999964 22
Q ss_pred eecce--eecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC----CCCCeEEEEEecCC
Q 004789 560 KLCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDG 632 (730)
Q Consensus 560 ~~~~~--~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~----h~~~v~~~~~spdg 632 (730)
..... .......++ ..+..++++++|+.+++. .++.|.+||. +++.+..+.... +...+.+++|+||+
T Consensus 217 ~~~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CcccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 11100 011011121 257789999999877775 5688999998 566666665321 11268899999998
Q ss_pred CEEEEEEcCC
Q 004789 633 KCIYVSCKSG 642 (730)
Q Consensus 633 ~~l~sgs~dg 642 (730)
+.|++++.++
T Consensus 292 ~~L~v~~~~g 301 (333)
T 2dg1_A 292 NQLIICSNDI 301 (333)
T ss_dssp CEEEEEEECG
T ss_pred CEEEEEeCcc
Confidence 8887666664
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=3.1e-12 Score=134.28 Aligned_cols=269 Identities=12% Similarity=0.024 Sum_probs=180.4
Q ss_pred ecCCCcEEEEeecCCCCCcceeeeec---CCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccccccccccee
Q 004789 350 AKSLEKSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 426 (730)
Q Consensus 350 ~~~dg~i~lWd~~~~~~~~~~~~~~l---~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~ 426 (730)
++.+++|.+||... +++..... .+.........+++. +++..++...++.|.+||..+++.
T Consensus 13 g~~~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~----------- 76 (328)
T 3dsm_A 13 QYSNATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE----------- 76 (328)
T ss_dssp TSCCBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----------
T ss_pred CCCCceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----------
Confidence 34579999999863 33322110 011123556778874 344445555578999988776654
Q ss_pred eEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCC-----CCeEEEEEcCCCe
Q 004789 427 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDL 498 (730)
Q Consensus 427 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~-----~~v~~i~~spdg~ 498 (730)
+... ........++++ +..+++.. ++.|.+||..+++....+.... .....+++ .++.
T Consensus 77 ----------~~~i---~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ 142 (328)
T 3dsm_A 77 ----------VGRI---TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKY 142 (328)
T ss_dssp ----------EEEE---ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTE
T ss_pred ----------EEEc---CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCE
Confidence 1111 133567889996 64444443 8999999999999888776433 13446677 3445
Q ss_pred EEEEE--CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEcCCCceecceee
Q 004789 499 FAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 499 l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d----------g~I~vwd~~~~~~~~~~~i 566 (730)
++++. .++.|.++|+.+++.+..+.. ......++++|+|++++++..+ +.|.++|..+++.... +
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--~ 219 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--F 219 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE--E
T ss_pred EEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE--E
Confidence 55554 488999999999998888764 3346788999999877766554 7899999988653321 1
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC-CCEEEEE----EcC
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVS----CKS 641 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~sg----s~d 641 (730)
. +..+ .....++|+|+++.++++.. .|.+||..+++................++++|+ +.+.++. ..+
T Consensus 220 ~-~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~ 292 (328)
T 3dsm_A 220 K-FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ 292 (328)
T ss_dssp E-CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred e-cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccC
Confidence 1 1112 35789999999999988644 899999988876422111111467889999994 5555555 567
Q ss_pred CeEEEEECCCceEEEEee
Q 004789 642 GHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 642 g~I~iwd~~~~~~~~~~~ 659 (730)
+.|.+||.. ++.+..+.
T Consensus 293 ~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 293 GIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEEEECTT-CCEEEEEE
T ss_pred CEEEEECCC-CCEEEEEE
Confidence 999999998 88888775
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2.6e-12 Score=132.65 Aligned_cols=231 Identities=11% Similarity=-0.053 Sum_probs=162.3
Q ss_pred CCCCeeEEEEe--Cc-EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 445 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 445 h~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
+.....+++|+ |+ .++++. ++.|..||..++ ...+..+...+.+++++|+| ++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 45667899999 66 566666 899999999987 66677777889999999999 7666666789999999888765
Q ss_pred EEEcCC----CCCeEEEEEeCCCCEEEEE----e-------------CCCcEEEEEcCCCceecceeecccccCCCCCCC
Q 004789 520 AKLKGH----QNRITCLAYSLSLNVLVSS----G-------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 520 ~~~~~h----~~~V~~l~~spd~~~l~s~----s-------------~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
...... ...+.+++++|+|+++++. + ..+.|..+|.. ++. .. . ..+. .
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~~---~-~~~~---~ 172 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL---SA---P-IRDR---V 172 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE---EE---E-ECCC---S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE---EE---e-ecCC---C
Confidence 433221 2356789999999988873 2 12455555554 221 11 1 1222 4
Q ss_pred CeEEEEEecCCcEEEEE-ecCcEEEEeCC-CCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 579 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s-~dg~I~iwd~~-~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
....++|+|+|+.+++. .++.|++||+. ++.. ...+ . .+...+..++++++|+++++. ++.|.+|+.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 57899999999999554 56889999986 4544 3334 2 235667789999999866665 8899999987 66
Q ss_pred EEEEeecccccCCCCcccceeeEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 654 LRCQINLTAYAQPGTISLELYPLVIAAH-PLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 654 ~~~~~~~~~~~~~gh~~~~v~~~~v~~s-p~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.+..+.. + .. +. +++|. | +++.|++++.+ .+.-+++.+..
T Consensus 248 ~~~~~~~-------~-~~-~~--~~~f~~~-d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 248 ELGRVLT-------P-QT-TS--NLCFGGP-EGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EEEEEEC-------S-SC-CC--EEEEEST-TSCEEEEEETT-EEEEEECSCCB
T ss_pred EEEEEEC-------C-CC-ce--eEEEECC-CCCEEEEEcCC-eEEEEEccccc
Confidence 6666652 2 33 56 88894 6 78888888766 45455555543
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=5.7e-12 Score=133.03 Aligned_cols=288 Identities=12% Similarity=0.057 Sum_probs=190.2
Q ss_pred cCCCCCCCeeEeecC-----CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEe----------CC
Q 004789 338 STSLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT 402 (730)
Q Consensus 338 ~~~spdg~~lat~~~-----dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s----------~d 402 (730)
....||++.+.+... ++.|.+.|.... ....++.. -..+ . +++||||+++++++ .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~v----G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDG----GFLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEE----CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEEC----CCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 456799998888765 578999998632 22233321 1223 4 99999999888876 35
Q ss_pred CcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceE
Q 004789 403 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQT 477 (730)
Q Consensus 403 g~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~ 477 (730)
+.|.+||..+.+.... +....+... .....-..++++ |++++++. ++.|.++|+.+++.
T Consensus 109 ~~VsviD~~t~~v~~~----------I~v~~g~r~------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTAD----------IELPDAPRF------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEECTTTCCEEEE----------EEETTCCCC------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CEEEEEECCCCeEEEE----------EECCCcccc------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 6788888777654211 000000000 012245578888 88877765 48999999999999
Q ss_pred EEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCC-CceEEEEcCC----CCCeE-EEEEe-CCCCEEEEEeCCC
Q 004789 478 LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVSSGADA 548 (730)
Q Consensus 478 ~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~-~~~~~~~~~h----~~~V~-~l~~s-pd~~~l~s~s~dg 548 (730)
+.++.... |..+.|.| .+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|
T Consensus 173 v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g 247 (386)
T 3sjl_D 173 KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG 247 (386)
T ss_dssp EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence 99986433 22233555 677888899999999876 5553322111 12222 24564 5775444 56689
Q ss_pred cEEEEEcCCCceecceeec-----ccccCCCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceee
Q 004789 549 QLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTS 612 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~-----~~~~~h~~~~~~v~~l~~spdg~~l~~s-~----------dg~I~iwd~~~~~~~~ 612 (730)
.|++.|+.+........+. ....+-.+ +....++++++++.+++. . .+.|.++|+.+++.+.
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred EEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 9999999875422112221 00111111 344568889999998884 2 2569999999999999
Q ss_pred eecCCCCCCCeEEEEEecCCC-EEEEEEc-CCeEEEEECCCceEEEEeec
Q 004789 613 QLVPDKMDLPITYATYSCDGK-CIYVSCK-SGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~-~l~sgs~-dg~I~iwd~~~~~~~~~~~~ 660 (730)
.+.. ...+.++++++|++ +|+++.. ++.|.++|..+++.+..+..
T Consensus 326 ~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 326 KFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 9876 45788999999997 7777554 89999999999999998874
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=3.4e-12 Score=131.68 Aligned_cols=234 Identities=10% Similarity=0.046 Sum_probs=166.2
Q ss_pred CCCcEEEEEEecCCC-EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 380 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 380 h~~~V~~v~fspdg~-~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
+.....+++|+|+|+ .++++..++.|..|+..++ . ..+. .+...+.+++++ |
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~~-------------~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPEM-------------HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEEE-------------SSCSSEEEEEECTTC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEEE-------------CCCCCcceeeECCCC
Confidence 456678999999998 6777778899999887654 2 1111 255678899998 7
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEcCC----CCCeEEEEEcCCC-eEEE----EE-------------CCCcEEEEec
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAF----GF-------------DDSSILVHCP 513 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~~~----~~~v~~i~~spdg-~l~s----gs-------------~dg~I~iwd~ 513 (730)
+++++.. ++.|.+||..+++........ ...+.+++++|+| .+++ |+ ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 7666665 689999999888765443221 2346689999999 6666 32 1346666766
Q ss_pred CCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCce-ecceeecccccCCCCCCCCeEEEEEecCCcE
Q 004789 514 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 514 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~-~~~~-~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
. ++. ..+..+......++|+|+++.+++.+.++.|.+||+. ++.. .....+ ..+. +.+..++++++|+.
T Consensus 161 ~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~---~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 161 D-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF----TVEP---GKTDGLRVDAGGLI 231 (296)
T ss_dssp T-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE----CCSS---SCCCSEEEBTTSCE
T ss_pred C-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe----eCCC---CCCCeEEECCCCCE
Confidence 5 443 4445566778999999999998777788999999997 3332 111111 1222 45678999999987
Q ss_pred EEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE-ecCCCEEEEEEcCCeEEEEECCCce
Q 004789 592 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 592 l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~-spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
.++. ++.|.+||.. ++.+..+..+ .. +.+++| +|+++.|++++.+ .+.-++..+.+
T Consensus 232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 6666 8899999985 7777777643 34 889999 5899999988865 46666766654
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=6.9e-11 Score=121.37 Aligned_cols=271 Identities=7% Similarity=-0.016 Sum_probs=186.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
....++|+..++...++.|..|+.. +....+..+. +...+.+++++++|..+++...++.|..|+.. +..
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-- 89 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-----GKITEYPLPT--PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-- 89 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-----CCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCCc--ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE--
Confidence 4567899988887778999999975 2344433322 45789999999999977776667889888764 211
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEE-EcCCCCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~-~~~~~~~v~~i~~ 493 (730)
..+. . ......+.++++. |.++++.. ++.|.+||. +++.... ...+...+.++++
T Consensus 90 ---------~~~~----------~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 90 ---------KEYT----------L-PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp ---------EEEE----------C-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred ---------EEEe----------C-CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 0111 0 0134568889998 66666655 789999998 5554432 2334567899999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEE-EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
.++| .+++...++.|..||. +++.... +......+.+++++++|+..++...++.|.+||. +++.. .+. ..
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~--~~ 221 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT---EFK--IP 221 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE--CS
T ss_pred cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE---EEE--CC
Confidence 9999 6666666789999998 6665443 3334567889999999997777667889999999 54321 111 11
Q ss_pred CCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
... ..+.+++++++|+..++. .++.|..||. +++ +..+....+...+.++++ ++|.+.++.+ .+.|..++..
T Consensus 222 ~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 222 TPN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp STT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred CCC---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 222 468899999999866665 6788999998 454 334432233567899999 8888766654 6778888877
Q ss_pred Cce
Q 004789 651 TLE 653 (730)
Q Consensus 651 ~~~ 653 (730)
+++
T Consensus 295 ~~~ 297 (299)
T 2z2n_A 295 KDN 297 (299)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=3.1e-11 Score=128.84 Aligned_cols=282 Identities=9% Similarity=-0.005 Sum_probs=185.3
Q ss_pred CCCCCCeeEeecC--CC---cEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEe----------CCCc
Q 004789 340 SLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 404 (730)
Q Consensus 340 ~spdg~~lat~~~--dg---~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s----------~dg~ 404 (730)
..||++.+.+... .. +|.++|.... ....++.. | ..+ .++|||||++|+++. .++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~---g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNG---G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecC---C-CCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 3478887777654 23 8899998632 12222221 1 223 899999999999886 3578
Q ss_pred EEEeecCCCccccccccccceeeEecCC-CCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceEE
Q 004789 405 HKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL 478 (730)
Q Consensus 405 I~iWd~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~~ 478 (730)
|.+||..+.+.... +... .+.. .+...-..++|+ |++|++++ ++.|.++| .+++.+
T Consensus 99 v~viD~~t~~~~~~----------i~~~~~~~~-------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 99 VEVFDPVTFLPIAD----------IELPDAPRF-------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred EEEEECCCCcEEEE----------EECCCcccc-------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 88998876544111 0000 0000 011234578888 88888776 37899999 999988
Q ss_pred EE-EcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEc-----CCCCC-eEEEEEeCCCCEEEEEeCCCc
Q 004789 479 AT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNR-ITCLAYSLSLNVLVSSGADAQ 549 (730)
Q Consensus 479 ~~-~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~-----~h~~~-V~~l~~spd~~~l~s~s~dg~ 549 (730)
.. +.... ++.+.|++ .+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+..+.
T Consensus 161 ~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 161 DQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred eEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence 88 65332 35566776 6677788999999999 887663322 11122 123456777666555557889
Q ss_pred EEEEEcCCCceecceeeccc-----ccCCCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceeee
Q 004789 550 LCVWDAVGWKKLCSKFLHSF-----QTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 613 (730)
Q Consensus 550 I~vwd~~~~~~~~~~~i~~~-----~~~h~~~~~~v~~l~~spdg~~l~~s-~----------dg~I~iwd~~~~~~~~~ 613 (730)
+.+.|+.+........+... ..+..+ .....++++|+++.+++. . ++.|.++|..+++.+..
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 99999976432111111100 001111 234458899999988874 2 25799999999999988
Q ss_pred ecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCceEEEEe
Q 004789 614 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 614 ~~~~~h~~~v~~~~~spdg~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 658 (730)
+.. .....+++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus 314 i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 314 ISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 865 44689999999999 788877 4899999999999988774
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=4.4e-12 Score=128.66 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=161.6
Q ss_pred CeeEEEEe--CcEEE-Eee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE
Q 004789 448 SISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 522 (730)
Q Consensus 448 ~V~~l~~s--~~~l~-s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~ 522 (730)
...+++++ |+.++ +.. ++.|.+||..++........+...+.+++++++| .+++.. ++.|.+||...+.. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 67789998 66555 434 7999999987654332222333567789999999 555544 88999999876544 333
Q ss_pred c-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 004789 523 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 600 (730)
Q Consensus 523 ~-~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I 600 (730)
. .....+.+++++++|+.+++...++.|.+||..+.... .. ..... ..+..++++++|+.+++. .++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~--~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VL--PFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----EC--CCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----ee--ccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 2 23367899999999998877777889999976653211 11 11111 357789999999866664 56899
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 601 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 601 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
.+||........... .+...+.+++++++|.++++...++.|.+|+..+..... ... ++ ...+. ++++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~------~~-~~~p~--~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF------TG-LNTPL--AVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC------CS-CSCEE--EEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc------CC-CCCce--eEEE
Confidence 999987665433222 223678999999999777777778899999987654332 111 11 12345 8999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 681 HPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+| +++++++...++.|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 78888999999999999997654
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=1.7e-12 Score=152.05 Aligned_cols=282 Identities=13% Similarity=0.018 Sum_probs=173.9
Q ss_pred CCCCCCCeeEeecCCCc---EEEEeecCCC-CCcceeeee---cCCCCCCCcEEEEEEecCCCEEEEEeCC-----CcEE
Q 004789 339 TSLPDADSAVCAKSLEK---SVNLKLQLIN-EPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQT-----ATHK 406 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~---i~lWd~~~~~-~~~~~~~~~---l~~~gh~~~V~~v~fspdg~~L~s~s~d-----g~I~ 406 (730)
..+|||++++....++. -.+|..+... ..+....+. ....+|...+..++|||||++||.++.+ ..|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 34599999997766543 6778775320 011222211 0012344578999999999999987664 3588
Q ss_pred EeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CC--------------EEEEE
Q 004789 407 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG--------------KISIF 470 (730)
Q Consensus 407 iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg--------------~I~vw 470 (730)
+||+.+++. +.... +...+..++|+ ++.|+.++ ++ .|++|
T Consensus 193 v~dl~tg~~---------------------~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 193 FVGVADGKP---------------------LADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp EEETTTCCE---------------------EEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEE
T ss_pred EEECCCCCC---------------------CCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEE
Confidence 888877654 11100 11112456777 65566655 43 39999
Q ss_pred EcCCceE--EEEEc--CCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEecCCC--ceEEEEcCCCCCeEEEEEeCCC
Q 004789 471 SLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL 538 (730)
Q Consensus 471 d~~t~~~--~~~~~--~~~~~v~~i~~spdg-~l~sgs~dg-----~I~iwd~~~~--~~~~~~~~h~~~V~~l~~spd~ 538 (730)
++.++.. ...+. .+...+..+.|+||| +|+..+.++ .|++||+.++ ++...+..+...+.... +|+|
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg 327 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG 327 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC
Confidence 9987652 22333 333458899999999 777666443 8999999877 41455555555555553 4889
Q ss_pred CEEEEEeCC----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceee
Q 004789 539 NVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTS 612 (730)
Q Consensus 539 ~~l~s~s~d----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~-~~~~~~ 612 (730)
+.|+..+.+ +.|.+||+.++. . ....+...+. ..+..++++ ++..+++ ..++..+||.+. +++...
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~-~---~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST-P---RFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS-C---EEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc-c---ccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 888877754 459999998742 0 1111233333 456677777 4455555 477765555433 455555
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEE----cCCeEEEEECCCceE
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 654 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs----~dg~I~iwd~~~~~~ 654 (730)
.+... ....+..++++|+++.|+... ..+.|++||+.+++.
T Consensus 400 ~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55432 256788899999987665332 348899999998873
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=2.4e-10 Score=117.32 Aligned_cols=275 Identities=8% Similarity=-0.014 Sum_probs=185.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
....+.++++.++|+..++...++.|.+|+.. +.. ..+. . ..+...+.++++. |.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------~~~~----------~-~~~~~~~~~i~~~~~g~ 74 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------KEFE----------V-PTPDAKVMCLIVSSLGD 74 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------EEEE----------C-SSTTCCEEEEEECTTSC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------EEEE----------C-CCCCCcceeEEECCCCC
Confidence 45688999999999976666678899998865 332 0011 1 1234568889998 66
Q ss_pred EEEEee-CCEEEEEEcCCceEEE-EEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE-EcCCCCCeEEEE
Q 004789 458 HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLA 533 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~-~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~ 533 (730)
.+++.. ++.|..||.. ++... .+......+.++++.++| .+++...++.|..+|.. ++.... +......+.+++
T Consensus 75 l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 75 IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 666555 7899999988 65532 222244678999999999 66666567899999987 655432 333456789999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~ 612 (730)
+.++|+..++...++.|..||. +++.. .+. ..... ..+..++++++|...++. ..+.|.+||. +++...
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~--~~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLE---EYP--LPTNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE 222 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEE---EEE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEE---Eee--CCCCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence 9999997776666788999998 43321 111 11222 468899999999877765 4667999998 555443
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
... ......+.+++++++|++.++...++.|..|+. +++.. .+... .. ...+. ++++.+ +++++++..
T Consensus 223 ~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-----~~-~~~~~--~i~~~~-~g~l~v~~~ 290 (300)
T 2qc5_A 223 YDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ-----TE-NAEPH--GITFGK-DGSVWFALK 290 (300)
T ss_dssp EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC-----ST-TCCCC--CEEECT-TSCEEEECS
T ss_pred EEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC-----cc-CCccc--eeEeCC-CCCEEEEcc
Confidence 222 223567899999999987666666799999998 45433 22211 11 23355 888888 777666554
Q ss_pred CCCcEEEEeCC
Q 004789 693 TNGRVHVIEPL 703 (730)
Q Consensus 693 ~Dg~I~iWd~~ 703 (730)
. .|..+++.
T Consensus 291 -~-~i~~~~p~ 299 (300)
T 2qc5_A 291 -C-KIGKLNLN 299 (300)
T ss_dssp -S-EEEEEEEC
T ss_pred -C-ceEEeCCC
Confidence 4 77777764
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.49 E-value=6.3e-11 Score=133.01 Aligned_cols=270 Identities=13% Similarity=0.057 Sum_probs=189.3
Q ss_pred cCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEE
Q 004789 391 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 467 (730)
Q Consensus 391 pdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I 467 (730)
|.+.++++...++.|.++|..+++. +.... ....+..+.++ |+++++++ ++.|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------~~~i~---~g~~p~~v~~SpDGr~lyv~~~dg~V 220 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI---------------------KTVLD---TGYAVHISRLSASGRYLFVIGRDGKV 220 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE---------------------EEEEE---CSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE---------------------EEEEe---CCCCccceEECCCCCEEEEEcCCCeE
Confidence 4445566777789999998876654 11111 23456689999 88999888 8999
Q ss_pred EEEEcC--CceEEEEEcCCCCCeEEEEEc----CCC-eEEEEE-CCCcEEEEecCCCceEEEEcCC-----------CCC
Q 004789 468 SIFSLE--TFQTLATFANPPPIATYFILL----PQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH-----------QNR 528 (730)
Q Consensus 468 ~vwd~~--t~~~~~~~~~~~~~v~~i~~s----pdg-~l~sgs-~dg~I~iwd~~~~~~~~~~~~h-----------~~~ 528 (730)
.+||+. +++.+.++.... ....++|+ ||| ++++++ .++.|.++|..+.+.+..+... ...
T Consensus 221 ~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 221 NMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp EEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred EEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence 999996 888888887543 45699999 699 655554 5689999999999988876521 126
Q ss_pred eEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeC
Q 004789 529 ITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA 605 (730)
Q Consensus 529 V~~l~~spd~~~-l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~ 605 (730)
+..+..++++.. ++....+|.|.++|....+... +..+..+ .....+.|+|+|++++++ .++.|.++|+
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~---v~~i~~~-----~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK---TTEISAE-----RFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE---EEEEECC-----SSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce---eeeeecc-----ccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 788888988655 4455567999999998743211 2212222 356789999999999884 5788999999
Q ss_pred CCCceeeeecC-C--CCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCC-------ceEEEEeecccccCCCCcccce
Q 004789 606 PTLNHTSQLVP-D--KMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTST-------LELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 606 ~~~~~~~~~~~-~--~h~~~v~~~~~spdg~~l~sgs--~dg~I~iwd~~~-------~~~~~~~~~~~~~~~gh~~~~v 673 (730)
.+++.+..+.. . .|.+.-..+ ++|++..+++.+ .++.|.++|..+ .+.+..+... | .+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-----g--~g-- 441 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-----G--GG-- 441 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-----C--SC--
T ss_pred CCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-----C--CC--
Confidence 99988777654 2 232212222 578755555433 468999999988 6677776632 1 22
Q ss_pred eeEEEEEecCCCCEEEEEeC-------CCcEEEEeCCCC
Q 004789 674 YPLVIAAHPLEPNRIALGLT-------NGRVHVIEPLES 705 (730)
Q Consensus 674 ~~~~v~~sp~~~~~las~s~-------Dg~I~iWd~~~~ 705 (730)
.+.+..|| +++++.+... .++|.++|+.+.
T Consensus 442 -~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 442 -SLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp -CCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred -CEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 22577899 7888877653 459999999876
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=7.9e-12 Score=126.74 Aligned_cols=236 Identities=9% Similarity=-0.017 Sum_probs=162.1
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 383 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 383 ~V~~v~fspdg~~L~-s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
...+++++++|+.++ +.+.++.|.+|+..+... ..+. ..+...+.+++++ |+.+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~------------~~~~~~p~~i~~~~~g~l~ 81 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVLP------------FNGLYQPQGLAVDGAGTVY 81 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EECC------------CCSCCSCCCEEECTTCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------ceEe------------eCCcCCcceeEECCCCCEE
Confidence 778999999999665 436678999988644332 0000 0233467788998 5544
Q ss_pred EEeeCCEEEEEEcCCceEEEEEc-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC
Q 004789 460 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 537 (730)
Q Consensus 460 ~s~sdg~I~vwd~~t~~~~~~~~-~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 537 (730)
++..++.|.+||..+.... .+. .....+.+++++++| .+++...++.|.+|+..+.............+.+++++++
T Consensus 82 v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 160 (270)
T 1rwi_B 82 VTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160 (270)
T ss_dssp EEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred EEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence 4433889999998765443 332 233578899999999 6666667889999986655443322233346789999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecC
Q 004789 538 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 538 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~ 616 (730)
|+.+++...++.|.+||..+.... . ...... ..+..++++++|..+++. .++.|.+||....... ....
T Consensus 161 g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~ 230 (270)
T 1rwi_B 161 GNVYVTDTDNNRVVKLEAESNNQV-----V-LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF 230 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTTCCEE-----E-CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCC
T ss_pred CCEEEEECCCCEEEEEecCCCceE-----e-ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eecc
Confidence 997777777889999998874321 1 111111 367899999999666664 5788999998654432 2221
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004789 617 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 617 ~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~ 653 (730)
.+...+.+++++++|+++++...++.|++|+....+
T Consensus 231 -~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 -TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 224678999999999988888889999999987654
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=1.9e-11 Score=124.71 Aligned_cols=232 Identities=13% Similarity=0.013 Sum_probs=170.7
Q ss_pred CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCC-CCeeEEEEe--CcEEEEeeCCEEE
Q 004789 392 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSASGGKIS 468 (730)
Q Consensus 392 dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~-~~V~~l~~s--~~~l~s~sdg~I~ 468 (730)
.++.|++++.|+.|.+||.++++. +|... .+. ..+.+++++ |++++ +.++.|.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~------------~w~~~-----------~~~~~~~~~~~~~pdG~ilv-s~~~~V~ 59 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI------------VWEYP-----------LEKGWECNSVAATKAGEILF-SYSKGAK 59 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE------------EEEEE-----------CCTTCCCCEEEECTTSCEEE-ECBSEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE------------EEEeC-----------CCccCCCcCeEECCCCCEEE-eCCCCEE
Confidence 456789999999999999877764 45432 122 457788888 77777 4488899
Q ss_pred EEEcCCceEEEEEcCCC-CCeEEEEEcCCC-eEEEEEC-CCcEEEEecCCCceEEEEcC------CCCCeEEEEEeCCCC
Q 004789 469 IFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLN 539 (730)
Q Consensus 469 vwd~~t~~~~~~~~~~~-~~v~~i~~spdg-~l~sgs~-dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~spd~~ 539 (730)
.||. +|+.+..+..+. ..+.++.+.++| .+++.+. ++.|..+|. +|+.+..+.. +......+++.++|+
T Consensus 60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 60 MITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred EECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 9999 899999998753 578899999999 8887776 778888886 6777776642 223455677899999
Q ss_pred EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC
Q 004789 540 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 618 (730)
Q Consensus 540 ~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~ 618 (730)
++++.+.++.|..||.. ++........ ..+.++.+.++|..++++ .++.|..+|..+++.+.++....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLS----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECS----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECC----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence 99999999999999998 6543222111 245678888999999885 56689999999899988875321
Q ss_pred ----CCCCeEEEEEecCCCEEEEEEcC--------CeEEEEEC-CCceEEEEeec
Q 004789 619 ----MDLPITYATYSCDGKCIYVSCKS--------GHVKVFDT-STLELRCQINL 660 (730)
Q Consensus 619 ----h~~~v~~~~~spdg~~l~sgs~d--------g~I~iwd~-~~~~~~~~~~~ 660 (730)
....+..++..++|.++++.... +..+++.+ .+|+.+..+..
T Consensus 207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 12337788888999988887421 23456666 56777777653
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=2e-10 Score=122.56 Aligned_cols=275 Identities=12% Similarity=0.055 Sum_probs=179.4
Q ss_pred EEecCCCEEEEEeC--CC---cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEE
Q 004789 388 IYSHSGDFLVALTQ--TA---THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 460 (730)
Q Consensus 388 ~fspdg~~L~s~s~--dg---~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~ 460 (730)
...|++++++++.. .+ +|.++|..+++. +..... + ..+ .++++ |++++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------~~~i~~-g-~~p--~i~~spDg~~ly 81 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------LGHVNG-G-FLP--NPVAAHSGSEFA 81 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------EEEecC-C-CCC--CeEECCCCCEEE
Confidence 34577877777654 22 667777655443 222211 1 122 78888 88877
Q ss_pred Eee-----------CCEEEEEEcCCceEEEEEcCC-------CCCeEEEEEcCCC-eEEEEEC--CCcEEEEecCCCceE
Q 004789 461 SAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTK 519 (730)
Q Consensus 461 s~s-----------dg~I~vwd~~t~~~~~~~~~~-------~~~v~~i~~spdg-~l~sgs~--dg~I~iwd~~~~~~~ 519 (730)
++. ++.|.+||..+++.+..+... ......++|+||| +|+++.. ++.|.++| .+++.+
T Consensus 82 v~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred EEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 764 478999999999888877533 1234589999999 8887764 47899999 999988
Q ss_pred EE-EcCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE-EEe
Q 004789 520 AK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIH 596 (730)
Q Consensus 520 ~~-~~~h~~~V~~l~~spd~-~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~-~s~ 596 (730)
.. +.. .+ ++.+.|++ +.+++.+.||.+.++|. +++............+.. .......+.+++..++ ++.
T Consensus 161 ~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~ 232 (373)
T 2mad_H 161 DQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPAQANKSGRIVWPVY 232 (373)
T ss_pred eEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecceeEecCCEEEEEcC
Confidence 77 642 22 24455655 45667778999999999 754331111000111111 1123456677655544 467
Q ss_pred cCcEEEEeCCCCc--eeeeecCCC--------CCCCeEEEEEecCCCEEEEEEc----------CCeEEEEECCCceEEE
Q 004789 597 EGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRC 656 (730)
Q Consensus 597 dg~I~iwd~~~~~--~~~~~~~~~--------h~~~v~~~~~spdg~~l~sgs~----------dg~I~iwd~~~~~~~~ 656 (730)
++.+.+.|+.+.. .+..+.... .......+.++||++.++++.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 7889999986542 222221100 0222444788999998888654 3589999999999988
Q ss_pred EeecccccCCCCcccceeeEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCcee
Q 004789 657 QINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 708 (730)
Q Consensus 657 ~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las~s-~Dg~I~iWd~~~~~~~ 708 (730)
.+.. | ...+ +++|+| |++ .++++. .++.|.+||+.+++..
T Consensus 313 ~i~~------g---~~p~--~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 313 QISL------G---HDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEC------C---CCcC--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 8863 2 1245 899999 788 677776 5899999999998765
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=7.4e-11 Score=122.33 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=161.1
Q ss_pred CCCeeEEEEe--CcEEEE-------ee-CCEEEEEEcCCceEEEEEc----CCCCCeEEEEEcCC-CeEEEEECCCcEEE
Q 004789 446 KDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSILV 510 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s-------~s-dg~I~vwd~~t~~~~~~~~----~~~~~v~~i~~spd-g~l~sgs~dg~I~i 510 (730)
-....+++|+ |..+++ +. ++.|.+||..+++...... ++...+.+++++++ |.+.+++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 3456789998 666666 45 8999999998887643322 24467889999999 65555555558999
Q ss_pred EecCCCceEEE-EcC----CCCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEEcCCCceecceeecccc
Q 004789 511 HCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSFQ 570 (730)
Q Consensus 511 wd~~~~~~~~~-~~~----h~~~V~~l~~spd~~~l~s~s~d---------------g~I~vwd~~~~~~~~~~~i~~~~ 570 (730)
||.. ++.... ... ....+.+++++++|++.++...+ +.|..||.. ++.. .+.
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~---~~~--- 168 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI---QVD--- 168 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE---EEE---
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE---Eec---
Confidence 9988 765433 221 12458899999999888776654 467777765 3211 111
Q ss_pred cCCCCCCCCeEEEEEe----cCCcEEEEE--ecCcEEEEeCC-CCce-----eeeecCCCCC-CCeEEEEEecCCCEEEE
Q 004789 571 TGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIYV 637 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~s----pdg~~l~~s--~dg~I~iwd~~-~~~~-----~~~~~~~~h~-~~v~~~~~spdg~~l~s 637 (730)
.. . .....++++ |+++.++++ .++.|.+||.. +++. ...+. .+. ..+..++++++|+++++
T Consensus 169 ~~-~---~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 169 TA-F---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EE-E---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEEE
T ss_pred cC-C---CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEEE
Confidence 11 1 346789999 999877664 56889999986 4432 12221 122 56788999999998888
Q ss_pred EEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC-EEEEEeCCCcEEEEeCCC
Q 004789 638 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 638 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las~s~Dg~I~iWd~~~ 704 (730)
...++.|.+||..+++....+.. + ...+. +++|+| +++ ++++...++.|..|++..
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~~-------~-~~~~~--~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIRC-------P-FEKPS--NLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEEC-------S-SSCEE--EEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCCCcEeEEEeC-------C-CCCce--eEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 88889999999987776655542 1 23355 899999 788 555556678999999875
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=3.5e-11 Score=126.99 Aligned_cols=280 Identities=12% Similarity=0.013 Sum_probs=186.9
Q ss_pred EEEecCCCEEEEEeC-----CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 387 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 387 v~fspdg~~L~s~s~-----dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
....|+++.+++... ++.|.+.|..+.+. +..... +. .+ .++++ |+++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------~~~I~v-G~-~P--~va~spDG~~l 92 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------IGMIDG-GF-LP--NPVVADDGSFI 92 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------EEEEEE-CS-SC--EEEECTTSSCE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------EEEEEC-CC-CC--cEEECCCCCEE
Confidence 445789998888765 56788877666543 222111 22 22 38888 7776
Q ss_pred EEee-----------CCEEEEEEcCCceEEEEEcCCC-------CCeEEEEEcCCC-eEEEEEC--CCcEEEEecCCCce
Q 004789 460 FSAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 518 (730)
Q Consensus 460 ~s~s-----------dg~I~vwd~~t~~~~~~~~~~~-------~~v~~i~~spdg-~l~sgs~--dg~I~iwd~~~~~~ 518 (730)
++++ ++.|.+||..+++.+.++.... .....++++||| +++++.. ++.|.++|+.+++.
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 6653 5789999999999998885322 234579999999 7777764 68999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CceecceeecccccCCCCCCCCe-EEEEEe-cCCcEEEEE
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIV-NHIQFH-PDQIHLLSI 595 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~-~~~~~~~~i~~~~~~h~~~~~~v-~~l~~s-pdg~~l~~s 595 (730)
+.++... + . ...+....+.+++.+.||.+.+.++.+ ++...... . ...... ..+ ....|. ++|++++++
T Consensus 173 v~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~-~~~~~~---~~~~~~~~~~~~dG~~~~vs 244 (386)
T 3sjl_D 173 KRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E-VFHPED---EFLINHPAYSQKAGRLVWPT 244 (386)
T ss_dssp EEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C-CCSCTT---SCBCSCCEEETTTTEEEEEB
T ss_pred EEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c-eecccc---ccccccceeEcCCCcEEEEe
Confidence 9888632 2 1 222333446677888889988888876 33211110 1 111100 122 234664 688877777
Q ss_pred ecCcEEEEeCCCCc--eeeeec--------CCCCCCCeEEEEEecCCCEEEEEEc----------CCeEEEEECCCceEE
Q 004789 596 HEGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELR 655 (730)
Q Consensus 596 ~dg~I~iwd~~~~~--~~~~~~--------~~~h~~~v~~~~~spdg~~l~sgs~----------dg~I~iwd~~~~~~~ 655 (730)
.+|.+++.|+.+.. .+..+. ..-.......++++++++.+++... .+.|.+.|+.+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 78999999997654 333332 0001123335777999999888754 257999999999999
Q ss_pred EEeecccccCCCCcccceeeEEEEEecCCCC-EEEE-EeCCCcEEEEeCCCCceeeec
Q 004789 656 CQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIAL-GLTNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 656 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las-~s~Dg~I~iWd~~~~~~~w~~ 711 (730)
..+.. | ..++ .++++| |++ +|++ ...++.|.++|..+++..-..
T Consensus 325 ~~i~v------g---~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 325 AKFEM------G---HEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEE------E---EEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEC------C---CCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 88874 2 2466 899999 665 5555 456899999999999875444
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.4e-11 Score=144.44 Aligned_cols=242 Identities=10% Similarity=0.005 Sum_probs=155.0
Q ss_pred CCCCeeEEEEe--CcEEEEee-C-C----EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCC----------
Q 004789 445 PKDSISCFALR--GSHLFSAS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS---------- 506 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s-d-g----~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg---------- 506 (730)
|...+..++|| |++|+.+. + | .|++||+.+++.+.... +...+..++|+||..|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 44467889999 88888876 2 3 69999999998765321 11123578999987344444443
Q ss_pred ----cEEEEecCCCce--EEEEc--CCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCceecceeecccccCC
Q 004789 507 ----SILVHCPCTKKT--KAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 507 ----~I~iwd~~~~~~--~~~~~--~h~~~V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
.|++|++.++.. ...+. .+...+.++.|+|||++|+..+.++ .|++||+.++....... +....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA---LIPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE---EECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE---ecCCC
Confidence 399999987752 23333 2344688999999999988877544 79999998752110111 22222
Q ss_pred CCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004789 574 VPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~-s~----dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
..+... ++|+|+.|+. +. ++.|.+||+.++ .....+.. .+...+..++++ ++.++++...|+..+||
T Consensus 317 ----~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 317 ----KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 234444 3588888887 43 345999999875 23344443 234556678887 66788888889887777
Q ss_pred ECC-CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE-EEe---CCCcEEEEeCCCCce
Q 004789 648 DTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 707 (730)
Q Consensus 648 d~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la-s~s---~Dg~I~iWd~~~~~~ 707 (730)
.+. +++....+.. +..+.+. .++++| +++.++ +.+ ..++|++||+.+++.
T Consensus 390 ~~~~~g~~~~~l~~-------~~~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 390 AFDLDGKPAGAVSL-------PGIGSAS--GLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTSCEEEECBC-------SSSCEEE--EEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEeCCCCceeeccC-------CCCeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 554 3554444431 1133455 889999 666444 333 457899999988764
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=8.2e-10 Score=113.31 Aligned_cols=268 Identities=12% Similarity=0.062 Sum_probs=182.1
Q ss_pred cCCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 338 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 338 ~~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
....++|+..++...++.|..|+.. +....+.++. +...+.++++.++|+..++...++.|..||.. +..
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-- 94 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-- 94 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-----CceEEEECCC--CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe--
Confidence 4567899988888788999999975 2333333332 45789999999999966666667888888765 322
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEE-EcCCCCCeEEEEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFIL 493 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~-~~~~~~~v~~i~~ 493 (730)
..+. . ......+.++++. |.++++.. ++.|..||.. ++.... +......+.++++
T Consensus 95 ---------~~~~----------~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 95 ---------TEYP----------L-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp ---------EEEE----------C-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred ---------EEec----------C-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 0010 1 0133568889988 66666666 7899999987 655432 3334567889999
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEE-EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
.++| ..++...++.|..+|. +++.... ...+...+.+++++++|+..++....+.|.+||... ... ... ..
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~---~~~--~~ 226 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EIS---EYD--IP 226 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEE---EEE--CS
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cEE---EEE--CC
Confidence 9999 6666556788999998 5654432 223446789999999998777766677899999833 211 111 11
Q ss_pred CCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~ 650 (730)
... ..+.+++++++|+..++. .++.|..||. +++.. .+........+.+++++++|++.++.. + .|..+|..
T Consensus 227 ~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 227 TPN---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp STT---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCC---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 122 468899999999866665 4689999998 45433 333222356688999999998666554 4 77777653
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=5.8e-11 Score=127.58 Aligned_cols=279 Identities=13% Similarity=0.059 Sum_probs=187.5
Q ss_pred CCCCCeeEeecCC-----CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEe----------CCCcE
Q 004789 341 LPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATH 405 (730)
Q Consensus 341 spdg~~lat~~~d-----g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s----------~dg~I 405 (730)
.||++.+.+.... ++|.+.|... .....++.. -..+ .+++||||++|+++. .++.|
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~v----G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDG----GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEE----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEEC----CCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 3677766655442 6899999863 223333332 1234 799999999888886 35688
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccC--C---CCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCc
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETF 475 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~---h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~ 475 (730)
.++|..+.+.... ...+ . .......++++ |++++++. ++.|.+.|+.++
T Consensus 152 sviD~~t~~vv~~---------------------I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 152 EVFDPVTFLPIAD---------------------IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp EEECTTTCCEEEE---------------------EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEECCCCcEEEE---------------------EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 8888776654211 1100 0 11234567888 88888775 478999999999
Q ss_pred eEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEE----cCCCCCe-EEEEEeCCCCEEEEEeCCC
Q 004789 476 QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGADA 548 (730)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~----~~h~~~V-~~l~~spd~~~l~s~s~dg 548 (730)
+.+.++.... +....|++ .+++.+.||.+.+.+..+++..... .....++ ..+.+.+++..++..+..+
T Consensus 211 kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g 286 (426)
T 3c75_H 211 TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG 286 (426)
T ss_dssp EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS
T ss_pred eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC
Confidence 9999887532 23445555 6667778888888888666554321 1111121 2356899998888778889
Q ss_pred cEEEEEcCCCceecceeecc-----cccCCCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceee
Q 004789 549 QLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTS 612 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~-----~~~~h~~~~~~v~~l~~spdg~~l~~s-~----------dg~I~iwd~~~~~~~~ 612 (730)
.+.+.|..+........+.. ...+..+ .....++++|+++.+++. . ++.|.++|..+.+.+.
T Consensus 287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN 364 (426)
T ss_dssp EEEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred cEEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE
Confidence 99999997643211111110 0001000 123347899999888874 2 3579999999999999
Q ss_pred eecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCceEEEEe
Q 004789 613 QLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 658 (730)
++.. ......+.|+|||+ ++++.. .++.|.++|+.+++.+..+
T Consensus 365 ~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 365 KIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 8875 34588999999999 888888 4899999999999999887
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=2.3e-10 Score=118.58 Aligned_cols=244 Identities=11% Similarity=0.002 Sum_probs=162.2
Q ss_pred CCcEEEEEEecCCCEEEE-------EeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEE
Q 004789 381 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 453 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s-------~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~ 453 (730)
-....+++|+++|..+++ ++.++.|.+|+..+++. ..+... . ..++...+.+++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----------~~~~~~--~------~~~~~~~~~~i~ 77 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----------TVICKP--E------VNGYGGIPAGCQ 77 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----------EEEECC--E------ETTEECCEEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----------EEEEec--c------cCCCCCCCceEE
Confidence 345678999999987666 46788999998766543 111100 0 002445688999
Q ss_pred Ee-C-cEEEEee-CCEEEEEEcCCceEEEE-EcCC----CCCeEEEEEcCCC-eEEEEECC---------------CcEE
Q 004789 454 LR-G-SHLFSAS-GGKISIFSLETFQTLAT-FANP----PPIATYFILLPQD-LFAFGFDD---------------SSIL 509 (730)
Q Consensus 454 ~s-~-~~l~s~s-dg~I~vwd~~t~~~~~~-~~~~----~~~v~~i~~spdg-~l~sgs~d---------------g~I~ 509 (730)
++ . ..+..++ ++.|.+||.. ++.... .... ...+.+++++++| .+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 98 5 6666665 6689999998 765433 2211 2357899999999 55555444 5688
Q ss_pred EEecCCCceEEEEcCCCCCeEEEEEe----CCCCEEEEE-eCCCcEEEEEcC-CCceecceeecccccCCCCCCCCeEEE
Q 004789 510 VHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLVSS-GADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 510 iwd~~~~~~~~~~~~h~~~V~~l~~s----pd~~~l~s~-s~dg~I~vwd~~-~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
.||.. ++..... .+......++|+ |+++.++.+ ..++.|.+||.. ++.......+. ...++.. ..+..+
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~--~~p~~i 231 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHE--GGADGM 231 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSS--CEEEEE
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-ECCCCCC--CCCCce
Confidence 88866 5544333 234557899999 999765544 567899999986 33221111222 1122110 246789
Q ss_pred EEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 004789 584 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTST 651 (730)
Q Consensus 584 ~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~ 651 (730)
+++++|+.+++. .++.|.+||..+++.+..+.. +...+.+++|+++|+.|++++ .++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888775 678899999987777666653 257899999999999665554 568899999865
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.36 E-value=6.9e-11 Score=137.38 Aligned_cols=226 Identities=12% Similarity=-0.038 Sum_probs=146.1
Q ss_pred eCcEEEEee-C-----CEEEEEEcCCceEEEEEc------CCCCCeEEEEEcCCC-eEEE-----EECCCcEEEEecCCC
Q 004789 455 RGSHLFSAS-G-----GKISIFSLETFQTLATFA------NPPPIATYFILLPQD-LFAF-----GFDDSSILVHCPCTK 516 (730)
Q Consensus 455 s~~~l~s~s-d-----g~I~vwd~~t~~~~~~~~------~~~~~v~~i~~spdg-~l~s-----gs~dg~I~iwd~~~~ 516 (730)
.|++++... + +.|.+.+...+.....+. +|...+.+++||||| +|+. |+.+..|++||+.++
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 377766655 3 234555555554433332 344568899999999 7763 333468999999998
Q ss_pred ceEEEEcCCCCCe--EEEEEeCCCCEEEEEeCCCc-------------EEEEEcCCCceecceeecccccCCCCCCCCeE
Q 004789 517 KTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQ-------------LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 581 (730)
Q Consensus 517 ~~~~~~~~h~~~V--~~l~~spd~~~l~s~s~dg~-------------I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~ 581 (730)
+.+. ..+...+ .+++|+|||+.|+.++.|.. |++|++.++.... ..+. ...++. ..+.
T Consensus 158 ~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~-~~~~~~---~~~~ 230 (695)
T 2bkl_A 158 EWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVH-ERTGDP---TTFL 230 (695)
T ss_dssp CBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEE-CCCCCT---TCEE
T ss_pred CCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEEE-ecCCCC---EEEE
Confidence 7641 1121222 68899999999999988776 9999998854211 1222 122232 4688
Q ss_pred EEEEecCCcEEEE-EecC----cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCc
Q 004789 582 HIQFHPDQIHLLS-IHEG----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTL 652 (730)
Q Consensus 582 ~l~~spdg~~l~~-s~dg----~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~----dg~I~iwd~~~~ 652 (730)
.+.|+|||++|+. +.++ .|++||..+++.. .+.. +...+....+ ++|. ++..+. ++.|++||+.++
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~--~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK--GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE--CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec--CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 9999999999987 4555 6888877655433 3432 2445556666 6677 554443 589999999877
Q ss_pred eE---EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 653 EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 653 ~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
.. ...+. .+....+. .++|+ ++.++++...|+..+||.+.
T Consensus 306 ~~~~~~~l~~-------~~~~~~l~--~~~~~--~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 306 ARASWKEIVP-------EDSSASLL--SVSIV--GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SGGGCEEEEC-------CCSSCEEE--EEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred CccCCeEEec-------CCCCCeEE--EEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 53 23322 21133455 77777 46788999999998888765
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=8.4e-10 Score=113.87 Aligned_cols=227 Identities=11% Similarity=0.070 Sum_probs=149.4
Q ss_pred CCcEEEEEEecCCCEE-EEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 381 GGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L-~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
..--.+..|+|++..| ++...++.|..||..++.. ..+ .....+.+++++ |+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~--------------~~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRV--------------TMDAPVSSVALRQSGG 66 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEE--------------ECSSCEEEEEEBTTSS
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEE--------------eCCCceEEEEECCCCC
Confidence 3445678999965544 4555578899888765543 111 134678899999 66
Q ss_pred EEEEeeCCEEEEEEcCCceEEEEEcCC----CCCeEEEEEcCCC-eEEEEEC-----------CCcEEEEecCCCceEEE
Q 004789 458 HLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAK 521 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~~~~~~~~~----~~~v~~i~~spdg-~l~sgs~-----------dg~I~iwd~~~~~~~~~ 521 (730)
|+.+.++.|.+||.++++........ ...+++++++|+| .+++... .+.|+.+|.. ++...
T Consensus 67 -l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~- 143 (297)
T 3g4e_A 67 -YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK- 143 (297)
T ss_dssp -EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-
T ss_pred -EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-
Confidence 55556778999999988765433321 2357899999999 4444322 1244444443 33332
Q ss_pred EcCCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcC--CCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec
Q 004789 522 LKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 597 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~-s~s~dg~I~vwd~~--~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d 597 (730)
+..+....+.++|+||++.|+ +.+.++.|.+||+. ++.......+... ..+. +....++++++|++.++. .+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-EKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-CGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-CCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 333445678999999998765 45567899999973 4432211222211 1111 457789999999877775 56
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcC
Q 004789 598 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 641 (730)
Q Consensus 598 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~sgs~d 641 (730)
+.|..||..+++.+..+... ...+++++|+ |+++.|++++..
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TEEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CEEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 77999999889988887653 5679999998 898887766643
No 209
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=9e-10 Score=127.14 Aligned_cols=292 Identities=12% Similarity=0.044 Sum_probs=185.9
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCC-CC-eeEEEEeCcEEEEee-CCEEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI 469 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~-~~-V~~l~~s~~~l~s~s-dg~I~v 469 (730)
+..+++++.++.|..+|..+++. +|............ ... .. -..+++.+..+++++ |+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAG--EACCDAVNRGVAVWKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccc--cccccCCCCccEEECCEEEEEccCCEEEE
Confidence 55688888889999999988875 56543221100000 000 01 122344566777777 999999
Q ss_pred EEcCCceEEEEEcCC--CCCeEEEEEcC---CCeEEEEE------CCCcEEEEecCCCceEEEEcCCC------------
Q 004789 470 FSLETFQTLATFANP--PPIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ------------ 526 (730)
Q Consensus 470 wd~~t~~~~~~~~~~--~~~v~~i~~sp---dg~l~sgs------~dg~I~iwd~~~~~~~~~~~~h~------------ 526 (730)
+|.++|+.+..+... ......+..+| ++.+++++ .++.|+.||..+|+.+-.+....
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999999887642 11111111112 45444443 36899999999999887764210
Q ss_pred -------------------CCeEEEEEeCCCCEEEEEeCCCc-------------------EEEEEcCCCceecceeecc
Q 004789 527 -------------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 527 -------------------~~V~~l~~spd~~~l~s~s~dg~-------------------I~vwd~~~~~~~~~~~i~~ 568 (730)
.....++++|++..++.++.++. |..+|..+++........
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~- 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT- 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-
Confidence 01125788998889999887763 999999998765332221
Q ss_pred cccCCCC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCCC---------------------
Q 004789 569 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM--------------------- 619 (730)
Q Consensus 569 ~~~~h~~----~~~~v~~l~~spdg~---~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h--------------------- 619 (730)
.|.. ....+.......+|+ .++. +.+|.++++|..+|+.+........
T Consensus 295 ---~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 295 ---PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ---CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1110 001222223334665 5666 4889999999999998743321100
Q ss_pred ----------------CCCeEEEEEecCCCEEEEEEc-------------------------------------------
Q 004789 620 ----------------DLPITYATYSCDGKCIYVSCK------------------------------------------- 640 (730)
Q Consensus 620 ----------------~~~v~~~~~spdg~~l~sgs~------------------------------------------- 640 (730)
...-..++|+|+..++++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 001123788998888887643
Q ss_pred --CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 641 --SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 641 --dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
+|.|+.||+.+|+.+..+... ..++ .-.+.. .+.++++|+.||.|+.||..+|+..|....+
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~---------~~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYV---------TIFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceeEEEEECCCCCeEeEccCC---------CCcc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 377999999999988776532 1122 223444 5779999999999999999999999988654
No 210
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.31 E-value=1.1e-09 Score=126.07 Aligned_cols=294 Identities=10% Similarity=0.026 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 471 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd 471 (730)
+..+++++.++.|..+|..+++. +|......................+++.+..+++++ |+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 45577888889999999988875 565433211000000000001123445566777777 99999999
Q ss_pred cCCceEEEEEcCC-C----CCeEE-EEEcCCCeEEEEEC------CCcEEEEecCCCceEEEEcCCCCC-----------
Q 004789 472 LETFQTLATFANP-P----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR----------- 528 (730)
Q Consensus 472 ~~t~~~~~~~~~~-~----~~v~~-i~~spdg~l~sgs~------dg~I~iwd~~~~~~~~~~~~h~~~----------- 528 (730)
..+|+.+..+..+ . ..+.+ ... .++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 9999999888754 2 12211 112 2345555543 689999999999988777532111
Q ss_pred ---------------------eEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCceecceeecc
Q 004789 529 ---------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 529 ---------------------V~~l~~spd~~~l~s~s~dg-------------------~I~vwd~~~~~~~~~~~i~~ 568 (730)
...++++|++..++.++.++ .|..+|..+++........
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~- 302 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET- 302 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred cccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-
Confidence 13578899999998887664 4999999998754432221
Q ss_pred cccCCC----CCCCCeEEEEEecCC---cEEEE-EecCcEEEEeCCCCceeeeecCCCC---------CCCe--------
Q 004789 569 FQTGLV----PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---------DLPI-------- 623 (730)
Q Consensus 569 ~~~~h~----~~~~~v~~l~~spdg---~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h---------~~~v-------- 623 (730)
.|. .......-+....+| ..+++ +.+|.++++|..+|+.+..+..... ..++
T Consensus 303 ---~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 303 ---PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp ---TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred ---CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 110 000122233444577 56666 4889999999999998866543210 0001
Q ss_pred ----------------EEEEEecCCCEEEEEEcC-------------------------------------------CeE
Q 004789 624 ----------------TYATYSCDGKCIYVSCKS-------------------------------------------GHV 644 (730)
Q Consensus 624 ----------------~~~~~spdg~~l~sgs~d-------------------------------------------g~I 644 (730)
..++|+|++.++++...+ |.|
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 257889998888876542 789
Q ss_pred EEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCCC
Q 004789 645 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 715 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~~ 715 (730)
..||+.+++.+..+.. ...++ ...+.. .+..++.++.||.+++||..+++..|....+.
T Consensus 460 ~A~D~~tG~~~W~~~~---------~~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 460 LAWDPVAQKAAWSVEH---------VSPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEETTTTEEEEEEEE---------SSSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEeCCCCcEEeecCC---------CCCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 9999999998877652 11233 333445 57788889999999999999999999886553
No 211
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.30 E-value=4.6e-09 Score=112.14 Aligned_cols=302 Identities=10% Similarity=-0.007 Sum_probs=186.5
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCC---C--CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~g---h--~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
++..+.+++.++.|..+|... .....+..+.... + ...+.+. ...++..+++++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~-- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD---GKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTV-- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT---CCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCE--
T ss_pred ECCEEEEEcCCCeEEEEEccC---CceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCE--
Confidence 567778888889999999863 2233333332100 0 2223222 223455688889999999999887764
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCe-----EEE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TYF 491 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v-----~~i 491 (730)
+|....+ ..........+..++.++ ++.|..+|..+|+.+..+....... ...
T Consensus 126 ----------~W~~~~~-----------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 126 ----------AWQTKVA-----------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp ----------EEEEECS-----------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC
T ss_pred ----------EEEEeCC-----------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc
Confidence 4543211 111111223456677777 9999999999999988776433211 122
Q ss_pred EEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCC----------e-EEEEEeCCCCEEEEEeCCCcEEEEEcCCCce
Q 004789 492 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR----------I-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 560 (730)
Q Consensus 492 ~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~ 560 (730)
... ++.+++++.++.|..+|..+|+.+......... + ..... .+..++.++.++.+..+|..+++.
T Consensus 185 ~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 185 TTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp EEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCE
T ss_pred EEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcE
Confidence 222 337778888999999999999887766532100 1 11111 245777888899999999998764
Q ss_pred ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 561 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 561 ~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
...... .....+... +..+++ +.++.+..+|..+++.+....... ...+..... .+..|++++
T Consensus 262 ~w~~~~-----------~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~ 325 (376)
T 3q7m_A 262 MWKREL-----------GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGD 325 (376)
T ss_dssp EEEECC-----------CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEEC
T ss_pred EeeccC-----------CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEe
Confidence 322111 123344433 445555 678899999999999876654211 222222333 256788999
Q ss_pred cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 640 KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 640 ~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
.+|.|+++|..+|+.+...... ...+.. .... .+..|+.++.+|.|..|+.
T Consensus 326 ~~g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 326 SEGYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence 9999999999999988776531 111221 1111 2457888899999999873
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=5.6e-10 Score=118.27 Aligned_cols=172 Identities=10% Similarity=0.021 Sum_probs=130.1
Q ss_pred CCeeEEEEe--CcEEEEeeCCEEEEEEcCCce-----------EEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004789 447 DSISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 512 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~-----------~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd 512 (730)
..++.++++ ..++++|+...+.+|+++..+ ..... .+.. |+.++| |+ .|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 368899999 778888885577779875433 11222 3555 999999 77 88888 889999999
Q ss_pred cCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 513 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 513 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.++... .+. ..|++++|+|+| ..
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eE
Confidence 9887766666677888988887754 3888899999999999975432 111 479999999999 44
Q ss_pred EEEecCcEEEEeCCCCce--eeeecC-------CCCCCCeEEEEEecCCCEEEEEE
Q 004789 593 LSIHEGQIDVYEAPTLNH--TSQLVP-------DKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 593 ~~s~dg~I~iwd~~~~~~--~~~~~~-------~~h~~~v~~~~~spdg~~l~sgs 639 (730)
+...||.+++|+...++. ..++.. .+|...|.+++|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 446899999999877664 445521 12578899999999999988643
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.7e-09 Score=110.03 Aligned_cols=222 Identities=12% Similarity=0.008 Sum_probs=145.1
Q ss_pred CCeeEEEEe--Cc-EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE
Q 004789 447 DSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 521 (730)
Q Consensus 447 ~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~ 521 (730)
.--.+..|+ ++ .+++.. ++.|+.||..+++.. .+. ....+.+++++++| ++++ . ++.|.+||..+++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 344578888 34 444444 799999999987653 332 35678999999999 5444 3 56899999988765433
Q ss_pred EcC----CCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC
Q 004789 522 LKG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 588 (730)
Q Consensus 522 ~~~----h~~~V~~l~~spd~~~l~s~s~d---------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd 588 (730)
... ....+++++++|+|+++++...+ ....+|.+...... ..+ .... .....++|+|+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~---~~~~----~~pngi~~spd 159 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV--KKY---FDQV----DISNGLDWSLD 159 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE--EEE---EEEE----SBEEEEEECTT
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE--EEE---eecc----ccccceEEcCC
Confidence 221 12457899999999976654321 23345554431110 111 1111 24678999999
Q ss_pred CcEEEEE--ecCcEEEEeC--CCCcee--eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecc
Q 004789 589 QIHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 589 g~~l~~s--~dg~I~iwd~--~~~~~~--~~~~-~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 661 (730)
++.|+++ .++.|.+||+ .++... +.+. ...+......++++++|++.++...++.|.+||..+++.+..+...
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 9988764 5688999987 455432 1121 1112356788999999988888777889999999999988877632
Q ss_pred cccCCCCcccceeeEEEEEe-cCCCCEEEEEe
Q 004789 662 AYAQPGTISLELYPLVIAAH-PLEPNRIALGL 692 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~s-p~~~~~las~s 692 (730)
...+. +++|. | +++.|..++
T Consensus 240 --------~~~~t--~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 240 --------VDKTT--SCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp --------SSBEE--EEEEESG-GGCEEEEEE
T ss_pred --------CCCce--EEEEeCC-CCCEEEEEc
Confidence 23355 99998 7 666554433
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=1.1e-09 Score=126.00 Aligned_cols=323 Identities=11% Similarity=0.041 Sum_probs=199.9
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCC-------CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-------GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~-------~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
+..+++++.++.|.-+|... .....++........ .....+++ ++..+++++.|+.+..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~- 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT---GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE- 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT---TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-
T ss_pred CCEEEEECCCCeEEEEECCC---CcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-
Confidence 45555666677777777652 223333332110000 00011222 456788899999999999988875
Q ss_pred cccccccceeeEecCCCC-eeEeecccCCCCCCee-EEEEeCcEEEEee-------CCEEEEEEcCCceEEEEEcCCCCC
Q 004789 417 LEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPPPI 487 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~-~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-------dg~I~vwd~~t~~~~~~~~~~~~~ 487 (730)
+|....+ ... ....+. .....+..+++++ +|.|+.||..+|+.+..+......
T Consensus 151 -----------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 212 (677)
T 1kb0_A 151 -----------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD 212 (677)
T ss_dssp -----------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred -----------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCC
Confidence 5654322 100 001111 1122344444443 589999999999999887643211
Q ss_pred --------------------------------eEEEEEcCCC-eEEEEECCC-------------------cEEEEecCC
Q 004789 488 --------------------------------ATYFILLPQD-LFAFGFDDS-------------------SILVHCPCT 515 (730)
Q Consensus 488 --------------------------------v~~i~~spdg-~l~sgs~dg-------------------~I~iwd~~~ 515 (730)
...++++|++ .++.++.++ .|..+|..+
T Consensus 213 ~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T 292 (677)
T 1kb0_A 213 PSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT 292 (677)
T ss_dssp TTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred ccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence 1257888888 777776654 599999999
Q ss_pred CceEEEEcC--CC-------CCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCCCceecceeecccc-------cCC---
Q 004789 516 KKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-------TGL--- 573 (730)
Q Consensus 516 ~~~~~~~~~--h~-------~~V~~l~~spd~---~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~-------~~h--- 573 (730)
|+.+..++. |. ....-+....+| ..++.++.+|.++++|..+++......+.... .+.
T Consensus 293 G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~ 372 (677)
T 1kb0_A 293 GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIG 372 (677)
T ss_dssp CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEE
T ss_pred CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceee
Confidence 999887754 21 112223334477 67889999999999999998765433221000 000
Q ss_pred ---------C----C-C--CCCeEEEEEecCCcEEEEE-ec---------------------------------------
Q 004789 574 ---------V----P-E--TTIVNHIQFHPDQIHLLSI-HE--------------------------------------- 597 (730)
Q Consensus 574 ---------~----~-~--~~~v~~l~~spdg~~l~~s-~d--------------------------------------- 597 (730)
. + . ...-..++++|++..+++. .+
T Consensus 373 ~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 452 (677)
T 1kb0_A 373 IAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK 452 (677)
T ss_dssp CGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC
T ss_pred ccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCC
Confidence 0 0 0 0001257899988888773 32
Q ss_pred ----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccce
Q 004789 598 ----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 673 (730)
Q Consensus 598 ----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 673 (730)
|.|..||+.+++.+..+.. ..++....++.++.+++.++.||.+++||..+|+.+..+... + . +
T Consensus 453 ~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~------~-~--~ 520 (677)
T 1kb0_A 453 SKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG------T-G--V 520 (677)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS------S-C--C
T ss_pred CCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC------C-C--c
Confidence 6799999999998877753 344555667778889999999999999999999999888642 1 1 2
Q ss_pred eeEEEEEecCCCCEE-EEEeC----------------CCcEEEEeCC
Q 004789 674 YPLVIAAHPLEPNRI-ALGLT----------------NGRVHVIEPL 703 (730)
Q Consensus 674 ~~~~v~~sp~~~~~l-as~s~----------------Dg~I~iWd~~ 703 (730)
...-+.|.+ +++++ ++.+. .+.+.+|.+.
T Consensus 521 ~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 521 VAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp CSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred ccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 222556666 66544 44322 3678888876
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=2.6e-09 Score=115.38 Aligned_cols=244 Identities=9% Similarity=-0.031 Sum_probs=161.3
Q ss_pred CCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC--cEEEEecCCCceEE
Q 004789 447 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKA 520 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg--~I~iwd~~~~~~~~ 520 (730)
.....++|+ ++++++.. ++.|++||..++........... .. ++|++++ .|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 457789998 66555555 68999999998877766554332 33 9999999 888888766 79999987765544
Q ss_pred EE----cCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe--EEEEEecCCcEEEE
Q 004789 521 KL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV--NHIQFHPDQIHLLS 594 (730)
Q Consensus 521 ~~----~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v--~~l~~spdg~~l~~ 594 (730)
.+ ......+.+++++|++..|+.+..++.|+.||..++......... ..+.. ..- ..++|+|++..|++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--~~g~~---~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--LSGSL---GTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--CCSCC---CCSSCCEEEEETTTTEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--ccCCC---CCCccccEEEeCCCCEEEE
Confidence 44 224567889999995555666777889999999875421110000 11111 122 39999996555555
Q ss_pred E--ecCcEEEEeCCCCceeeeecCCC-------------CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEe
Q 004789 595 I--HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 595 s--~dg~I~iwd~~~~~~~~~~~~~~-------------h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~ 658 (730)
+ .++.|+.|+... . +..+.... .-.....++++++|+++++-+ .++.|+.|++.++......
T Consensus 284 ~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 3 578899999753 3 22332211 023578999999999777777 7899999998888754333
Q ss_pred ecccccCCCCccc------ceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 659 NLTAYAQPGTISL------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 659 ~~~~~~~~gh~~~------~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
..... .|..++ --.+..++++| ++.++++-..++.|+.+++
T Consensus 362 g~~~~--~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDV--ASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTC--BSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCC--CCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 21000 010000 11244899999 6888888888889988876
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.26 E-value=6e-09 Score=111.21 Aligned_cols=283 Identities=9% Similarity=0.019 Sum_probs=176.5
Q ss_pred CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEeCcEEEEee-CCEEEE
Q 004789 392 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 469 (730)
Q Consensus 392 dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-dg~I~v 469 (730)
++..+++++.++.|..+|..+++. +|....+..... . ......+. .+...+..+++++ ++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGW-F-SKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---C-C-SCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCce------------eeeecCcccccc-c-cccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 356688888899999999888775 454322110000 0 00022332 2333467777777 899999
Q ss_pred EEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCe-----EEEEEeCCCCEEEEE
Q 004789 470 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 544 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~spd~~~l~s~ 544 (730)
+|..+|+.+................ ++.+++++.++.|..+|..+|+.+.......... ...... +..++.+
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g 194 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG 194 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred EECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence 9999999988776543322222222 3478888899999999999999887765432111 122222 3467778
Q ss_pred eCCCcEEEEEcCCCceecceeecccccCCCCCCCC---e-EEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC
Q 004789 545 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 619 (730)
Q Consensus 545 s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~---v-~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h 619 (730)
+.++.+..+|..+++........ ...+... ... + ..... .++ .+++ +.++.+..+|..+++.+.....
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~-~~~~~~~~~~p~~-~~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~--- 267 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRIS-QATGSTE-IDRLSDVDTTPVV-VNG-VVFALAYNGNLTALDLRSGQIMWKREL--- 267 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECC-C------------CCCCCCEE-ETT-EEEEECTTSCEEEEETTTCCEEEEECC---
T ss_pred cCCCEEEEEECCCCcEEEEEecc-cCCCCcc-cccccccCCCcEE-ECC-EEEEEecCcEEEEEECCCCcEEeeccC---
Confidence 88999999999987654333222 0000000 000 1 01111 134 4555 5789999999999998766542
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEE
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 699 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~i 699 (730)
.....+.. ++..|++++.++.|+.+|..+++.+...... + ...+. .... .+..|+.++.+|.|.+
T Consensus 268 -~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--~~~~~--~~~~---~~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 268 -GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--HRLLT--SPVL---YNGNLVVGDSEGYLHW 332 (376)
T ss_dssp -CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--TSCCC--CCEE---ETTEEEEECTTSEEEE
T ss_pred -CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--CCccc--CCEE---ECCEEEEEeCCCeEEE
Confidence 23344443 4668888889999999999999977665411 1 11122 1122 2467888889999999
Q ss_pred EeCCCCceeeeccC
Q 004789 700 IEPLESEVEWGKLP 713 (730)
Q Consensus 700 Wd~~~~~~~w~~~~ 713 (730)
+|..+++..|....
T Consensus 333 ~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 333 INVEDGRFVAQQKV 346 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999999998754
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=1.8e-09 Score=116.02 Aligned_cols=228 Identities=14% Similarity=-0.036 Sum_probs=150.5
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEE----------CCCcEEEEecCCCceEEEEcCC-------C
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------Q 526 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h-------~ 526 (730)
+.|.++|..+++.+.++.....+ .++++||| .++++. .++.|.++|..+++.+..+.-. .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 79999999999999999865555 89999999 776665 4678999999999988877521 1
Q ss_pred CCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE---------
Q 004789 527 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--------- 595 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--------- 595 (730)
.....++|+|||++++++.. ++.|.++|+.+++......+......... +.-..++++++|+.+++.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~--g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPA--SPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE--ETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccC--CCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 33567899999999998864 57899999999765433322100000000 001124445555544432
Q ss_pred -----------------------------ecCcEEEEeCCCCce--eeeecCC--C------CCCCeEEEEEecCCCEEE
Q 004789 596 -----------------------------HEGQIDVYEAPTLNH--TSQLVPD--K------MDLPITYATYSCDGKCIY 636 (730)
Q Consensus 596 -----------------------------~dg~I~iwd~~~~~~--~~~~~~~--~------h~~~v~~~~~spdg~~l~ 636 (730)
..+.+.+.|...... +..+... . .......++++|+++.++
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 223344444432221 0111100 0 001112368999998888
Q ss_pred EEEc----------CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC-EEEEEe-CCCcEEEEeCCC
Q 004789 637 VSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLE 704 (730)
Q Consensus 637 sgs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las~s-~Dg~I~iWd~~~ 704 (730)
+... ++.|.++|..+.+.+..+.. | ...+ +++|+| +++ +++++. .++.|.|+|+.+
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g---~~P~--gia~sp-Dg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL------G---HEID--SINVSQ-DAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------E---EEEC--EEEECC-SSSCEEEEEETTTTEEEEEETTT
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEEC------C---CCcC--eEEEcc-CCCEEEEEEcCCCCeEEEEECCC
Confidence 7653 35799999999999988864 2 1245 899999 787 777777 599999999999
Q ss_pred Ccee
Q 004789 705 SEVE 708 (730)
Q Consensus 705 ~~~~ 708 (730)
++..
T Consensus 403 ~kvv 406 (426)
T 3c75_H 403 GEEL 406 (426)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 9865
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=3e-09 Score=122.76 Aligned_cols=291 Identities=11% Similarity=0.053 Sum_probs=180.5
Q ss_pred CCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCC-----CC-CcE-EEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 343 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 343 dg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~g-----h~-~~V-~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
.+..+++++.++.|.-+|... ....-++...... .. ..+ ..+++ ++..+++++.|+.|..+|..+++.
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARD---GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTT---CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEECCC---CceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE
Confidence 355666677778888888753 3333333221100 00 000 11122 355788999999999999988875
Q ss_pred ccccccccceeeEecCCCC-eeEeecccCCCCCCee-EEEEeCcEEEEee-------CCEEEEEEcCCceEEEEEcCCC-
Q 004789 416 SLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP- 485 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-------dg~I~vwd~~t~~~~~~~~~~~- 485 (730)
+|..... .. .....+. +....+..+++++ +|.|..||..+|+.+..+....
T Consensus 144 ------------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 204 (689)
T 1yiq_A 144 ------------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204 (689)
T ss_dssp ------------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred ------------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence 5653321 00 0001111 1112344444443 5899999999999988775210
Q ss_pred --C----------------------------CeEEEEEcCCC-eEEEEECCC-------------------cEEEEecCC
Q 004789 486 --P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCT 515 (730)
Q Consensus 486 --~----------------------------~v~~i~~spdg-~l~sgs~dg-------------------~I~iwd~~~ 515 (730)
. ....++++|++ .+++++.++ .|..+|.++
T Consensus 205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 0 01257888888 888887775 399999999
Q ss_pred CceEEEEcC--CC-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCceecceeeccc--------------
Q 004789 516 KKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF-------------- 569 (730)
Q Consensus 516 ~~~~~~~~~--h~-------~~V~~l~~spd~~---~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~-------------- 569 (730)
|+.+..++. |. ..+.......+|+ .++.++.+|.++++|..+++......+...
T Consensus 285 G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi 364 (689)
T 1yiq_A 285 GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPI 364 (689)
T ss_dssp CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEE
T ss_pred CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcc
Confidence 999887764 21 1122222233565 788899999999999999876522211100
Q ss_pred --------ccCCC-----C---CCCCeEEEEEecCCcEEEEE-e------------------------------------
Q 004789 570 --------QTGLV-----P---ETTIVNHIQFHPDQIHLLSI-H------------------------------------ 596 (730)
Q Consensus 570 --------~~~h~-----~---~~~~v~~l~~spdg~~l~~s-~------------------------------------ 596 (730)
..... + ....-..++++|+...+++. .
T Consensus 365 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 444 (689)
T 1yiq_A 365 LDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAE 444 (689)
T ss_dssp ECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHH
T ss_pred cchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccc
Confidence 00000 0 00011237899988777763 2
Q ss_pred ---------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 597 ---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 597 ---------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
+|.|+.||+.+++.+..+.. ..++....++..+.+++.|+.||.|+.||..+|+.+..+..
T Consensus 445 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 445 GLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp HHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 37799999999998877754 23334446677888999999999999999999999988763
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=1.9e-09 Score=116.58 Aligned_cols=239 Identities=10% Similarity=-0.019 Sum_probs=156.1
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
...+.++|+++|+.+++...++.|++||..++.. ..... ...... ++|+ ++.|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------~~~~~---~~~~~~-ia~~~~g~~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------TTVHP---GFKGGK-PAVTKDKQRV 185 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------EEEEE---TCCBCB-CEECTTSSEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------EEeec---cCCCCc-eeEecCCCcE
Confidence 4688999999999666666678999998766543 11110 112223 7888 7777
Q ss_pred EEee-CC--EEEEEEcCCceEEEEE----cCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEE----EcCCCC
Q 004789 460 FSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK----LKGHQN 527 (730)
Q Consensus 460 ~s~s-dg--~I~vwd~~t~~~~~~~----~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~----~~~h~~ 527 (730)
+++. ++ .|.+|+..++.....+ ......+.+++++|++ .|+++..++.|+.||..++..... ..++..
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 7777 54 8999998776554444 2245567889999954 666677788999999987754322 222222
Q ss_pred Ce--EEEEEeCC-CCEEEEEeCCCcEEEEEcCCCceecceeeccc-ccCCC------CCCCCeEEEEEecCCcEEEE-E-
Q 004789 528 RI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLV------PETTIVNHIQFHPDQIHLLS-I- 595 (730)
Q Consensus 528 ~V--~~l~~spd-~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~-~~~h~------~~~~~v~~l~~spdg~~l~~-s- 595 (730)
.- ..++|+|+ +.++++....+.|+.||...... ...... ..+.. ........++++|+|+++++ .
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22 39999995 55566666788999999875211 000000 00000 00034789999999996666 4
Q ss_pred ecCcEEEEeCCCCceeeeecCCC-------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 596 HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 596 ~dg~I~iwd~~~~~~~~~~~~~~-------------h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.++.|+.||+.++... .+.... .-.....++++++|.++++-..++.|+.+++
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 5678999998777643 332210 0245789999999888888878888888765
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=2.4e-10 Score=121.12 Aligned_cols=188 Identities=12% Similarity=0.009 Sum_probs=136.1
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEE
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 461 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s 461 (730)
..++.+++++.+.++++|+.++ +.+|+++..+......... +. ..... .+.. |+.++|.+++|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~-----~~--~~~~~------~lp~-V~~l~fd~~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP-----LT--FKWEK------EIPD-VIFVCFHGDQVLV 102 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC-----CC--CSEEE------ECTT-EEEEEEETTEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc-----cc--ceEEe------eCCC-eeEEEECCCEEEE
Confidence 3688999999999999999884 5569876544211000000 00 00111 2455 9999998888888
Q ss_pred eeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE
Q 004789 462 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 541 (730)
Q Consensus 462 ~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l 541 (730)
+.++.|++||+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| +
T Consensus 103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence 88999999999887766666677778888877655 58889999999999999887653 34589999999999 6
Q ss_pred EEEeCCCcEEEEEcCCCceecceeec--cccc---CCCCCCCCeEEEEEecCCcEEEE
Q 004789 542 VSSGADAQLCVWDAVGWKKLCSKFLH--SFQT---GLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 542 ~s~s~dg~I~vwd~~~~~~~~~~~i~--~~~~---~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
+.|..||++++|+..+++......+. .... +|. ..|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 78999999999998875531011121 0011 244 68999999999999987
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=1.2e-08 Score=106.75 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=140.6
Q ss_pred eeEEEEe--Cc-EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEc
Q 004789 449 ISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 523 (730)
Q Consensus 449 V~~l~~s--~~-~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~ 523 (730)
..+.+|+ ++ .+++.. ++.|..||..+++.. .+. ....+.+++++++| ++++ +.+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEee
Confidence 3567787 34 455555 799999999887654 333 34679999999999 5544 444 59999998887543322
Q ss_pred C----CCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE
Q 004789 524 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 593 (730)
Q Consensus 524 ~----h~~~V~~l~~spd~~~l~s~s~------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~ 593 (730)
. ....+++++++|+|+++++... .+.|..+| +++.. .+. .+ . .....++|+|+++.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~~~---~~-~---~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---KLF---AD-I---SIPNSICFSPDGTTGY 194 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---EEE---EE-E---SSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---Eee---CC-C---cccCCeEEcCCCCEEE
Confidence 1 1245889999999997665432 24566666 33211 111 11 1 2467899999999887
Q ss_pred EE--ecCcEEEEeCC--CC-cee--eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC
Q 004789 594 SI--HEGQIDVYEAP--TL-NHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 665 (730)
Q Consensus 594 ~s--~dg~I~iwd~~--~~-~~~--~~~~-~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 665 (730)
.+ .++.|.+||+. ++ ... ..+. ..........++++++|.+.++...++.|.+|+. +++.+..+...
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---- 269 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---- 269 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS----
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC----
Confidence 64 46789999985 55 321 1121 1112455678999999988777767789999998 56666665421
Q ss_pred CCCcccceeeEEEEEe-cCCCCEEEEEe
Q 004789 666 PGTISLELYPLVIAAH-PLEPNRIALGL 692 (730)
Q Consensus 666 ~gh~~~~v~~~~v~~s-p~~~~~las~s 692 (730)
...+. +++|+ | +++.|..++
T Consensus 270 ----~~~~~--~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 270 ----GKQTT--CPAFIGP-DASRLLVTS 290 (326)
T ss_dssp ----CSBEE--EEEEEST-TSCEEEEEE
T ss_pred ----CCCcE--EEEEecC-CCCEEEEEe
Confidence 22356 89998 7 666654444
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=1.4e-08 Score=106.23 Aligned_cols=223 Identities=12% Similarity=-0.042 Sum_probs=144.7
Q ss_pred cEEEEEEecCCCEE-EEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 383 RVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 383 ~V~~v~fspdg~~L-~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
-..+.+|+|++..+ ++...++.|..|+..++.. ..|. ....+.+++++ |+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------------~~~~v~~i~~~~dg~l~ 104 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------------LPFMGSALAKISDSKQL 104 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------------CSSCEEEEEEEETTEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------------CCCcceEEEEeCCCeEE
Confidence 34678899986544 4555578888888765432 1111 23578899998 5555
Q ss_pred EEeeCCEEEEEEcCCceEEEEEcCC----CCCeEEEEEcCCC-eEEEEEC------CCcEEEEecCCCceEEEEcCCCCC
Q 004789 460 FSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 460 ~s~sdg~I~vwd~~t~~~~~~~~~~----~~~v~~i~~spdg-~l~sgs~------dg~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
+ +.++.|.+||..+++........ ...+.+++++|+| .+++... .+.|..+| +++... +..+...
T Consensus 105 v-~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~ 180 (326)
T 2ghs_A 105 I-ASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI 180 (326)
T ss_dssp E-EETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS
T ss_pred E-EECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc
Confidence 4 45455999999888764433211 2358899999999 5444332 24566666 454433 3223346
Q ss_pred eEEEEEeCCCCEEEEE-eCCCcEEEEEcC--CC-ceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEE
Q 004789 529 ITCLAYSLSLNVLVSS-GADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 603 (730)
Q Consensus 529 V~~l~~spd~~~l~s~-s~dg~I~vwd~~--~~-~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iw 603 (730)
...++|+||++.++.+ +.++.|.+||+. ++ .......+. ...... ..+..++++++|.+.++. .++.|.+|
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSS---SEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-ECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 7899999999877554 457899999986 44 321111221 111122 456789999999877765 46789999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcC
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 641 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~sgs~d 641 (730)
|. +++.+..+... ...+.+++|+ ++++.|++++..
T Consensus 257 d~-~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 257 DT-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CT-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CC-CCCEEEEEECC--CCCcEEEEEecCCCCEEEEEecC
Confidence 98 67777666542 5579999998 888877666544
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=9.8e-10 Score=127.49 Aligned_cols=240 Identities=12% Similarity=0.063 Sum_probs=154.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeC-----CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 454 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~-----dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~ 454 (730)
|...+..++|||||++||.+.. +..|++||+.+++. +...+ +......++|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---------------------~~~~~---~~~k~~~~~W 182 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---------------------LETPL---KDVKFSGISW 182 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---------------------EEEEE---EEEESCCCEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---------------------Ccccc---CCceeccEEE
Confidence 5668899999999999886443 24688888777653 11100 1111235677
Q ss_pred e-CcEEEEee-CC-------------EEEEEEcCCceE--EEEEc--C-CCCCeEEEEEcCCC-eEE-EEEC---CCcEE
Q 004789 455 R-GSHLFSAS-GG-------------KISIFSLETFQT--LATFA--N-PPPIATYFILLPQD-LFA-FGFD---DSSIL 509 (730)
Q Consensus 455 s-~~~l~s~s-dg-------------~I~vwd~~t~~~--~~~~~--~-~~~~v~~i~~spdg-~l~-sgs~---dg~I~ 509 (730)
+ |+.|+.++ +. .|++|++.++.. ...+. . |...+.++.|+||| +|+ +.+. ++.|+
T Consensus 183 sDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 183 LGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp ETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred eCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 7 77777776 53 499999987642 23333 3 44557889999999 554 3332 24899
Q ss_pred EEecCCCc-eEEEEcCCCCCeEEEEEeCCCCEEEEEe-CC---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEE
Q 004789 510 VHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSG-AD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 584 (730)
Q Consensus 510 iwd~~~~~-~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~ 584 (730)
++|+.++. ....+..+....... ++++|..|+..+ .+ +.|..+|+.++....... ...+. ..+. .
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~----l~~~~---~~~~--~ 332 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD----LIPER---QQVL--T 332 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE----EECCC---SSCE--E
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE----EecCC---CCEE--E
Confidence 99998763 445566666666555 666666655444 33 579999998753211111 12232 2343 8
Q ss_pred EecCCcEEEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCceEE
Q 004789 585 FHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLELR 655 (730)
Q Consensus 585 ~spdg~~l~~-s-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d----g~I~iwd~~~~~~~ 655 (730)
|++++++|+. . .++ .|++||+.. .....+... ....+..+.++++++.|+....+ +.|+.||+.+++..
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEG-KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTS-CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCC-CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 9999998887 3 444 689999864 444455432 24567777888888877766555 89999999888643
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=3.4e-09 Score=109.72 Aligned_cols=229 Identities=7% Similarity=-0.016 Sum_probs=150.9
Q ss_pred CCCcEEEEEEecCCCE-EEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--C
Q 004789 380 FGGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 456 (730)
Q Consensus 380 h~~~V~~v~fspdg~~-L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~ 456 (730)
........+|+|+|+. +++...++.|..|+.. +.. ..+. .+...+..++++ |
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----------~~~~-------------~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----------DVLL-------------DATAFTNGNAVDAQQ 97 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----------EEEE-------------ESCSCEEEEEECTTS
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----------EEEe-------------CCCCccceeeECCCC
Confidence 4556778999999994 4555567889888763 221 1111 245668899999 6
Q ss_pred cEEEEee-CCEEEEEEcCCceEEEEEc---CC-CCCeEEEEEcCCC-eEEE----EEC-------------CCcEEEEec
Q 004789 457 SHLFSAS-GGKISIFSLETFQTLATFA---NP-PPIATYFILLPQD-LFAF----GFD-------------DSSILVHCP 513 (730)
Q Consensus 457 ~~l~s~s-dg~I~vwd~~t~~~~~~~~---~~-~~~v~~i~~spdg-~l~s----gs~-------------dg~I~iwd~ 513 (730)
+++++.. ++.|.+|+.. ++...... +. ...+.+++++|+| ..++ |.. .+.|+.||.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 6555544 5899999986 55432221 11 2346789999999 6665 332 256888888
Q ss_pred CCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec
Q 004789 514 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 587 (730)
Q Consensus 514 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp 587 (730)
.+++..... .....+.++|+||++.|+.+... +.|.+||+..+.......+. .... +....+++++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~---~~~~---~~pdgi~~d~ 248 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA---SVPD---GLPDGFCVDR 248 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE---CCSS---SCCCSEEECT
T ss_pred CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE---ECCC---CCCCeEEECC
Confidence 777654433 34567899999999988777665 68999998764311111111 1111 3456789999
Q ss_pred CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 588 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 588 dg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
+|++.++. .+.|.+||. +++.+..+... ..+.+++|+++++.|+.++.++ ++.++
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99954444 445999998 57777777642 2588999999999888887654 44443
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.16 E-value=1.5e-09 Score=114.41 Aligned_cols=270 Identities=9% Similarity=-0.026 Sum_probs=169.0
Q ss_pred CcEEEEEEecCCCEEEEEeC--CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 382 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~--dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
..+..++++|+|+.+++... ++.++||.+.++.. ..|-.... ...++-..+.+++++ |+
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----------~~~p~~~~------~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----------IPFPPQSG------NAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----------EESCCCCS------SCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----------ecCCCccc------CcccceeEeeEEEEcCCCc
Confidence 67899999999998887642 34366666542221 00100000 011356789999999 54
Q ss_pred EEEEee------CCEEEEEEcCCceEEEEEcCC------CCCeEEEEEcCCC-e-EEEEE---CCCcEEEEecCCCceEE
Q 004789 458 HLFSAS------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD-L-FAFGF---DDSSILVHCPCTKKTKA 520 (730)
Q Consensus 458 ~l~s~s------dg~I~vwd~~t~~~~~~~~~~------~~~v~~i~~spdg-~-l~sgs---~dg~I~iwd~~~~~~~~ 520 (730)
++++-. ++.|.+||+.+++.+..+..+ ...+..+++++++ . +++.. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 444332 379999999999987777532 2346899999865 4 44444 57899999999898877
Q ss_pred EEcCCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec-
Q 004789 521 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE- 597 (730)
Q Consensus 521 ~~~~h~~~V~-~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d- 597 (730)
.+.+|..... ...+.++|..+.+.+.++.+..|. ..+..++|+|+|+.|+++ .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence 7765432211 134455676666667777664432 135689999999988885 33
Q ss_pred CcEEEEeCC---CCc-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCc
Q 004789 598 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 669 (730)
Q Consensus 598 g~I~iwd~~---~~~-----~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 669 (730)
+.++.++.. .+. ....+...++......++++++|.++++...++.|.+||..+++...... .
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------~-- 287 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-------D-- 287 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------C--
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------C--
Confidence 355555532 111 00001100123356679999999999998889999999986676433322 1
Q ss_pred ccceeeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 004789 670 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 701 (730)
Q Consensus 670 ~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd 701 (730)
....++.++++.+ ++.++++.+..+.+.+|.
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred CceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 1112344899999 788888877665554443
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.16 E-value=2.7e-09 Score=111.32 Aligned_cols=295 Identities=11% Similarity=0.052 Sum_probs=186.2
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
..+..++.++.|..|| .. ........+ +...+.++...++|. |..++.+ +..+|. +++.
T Consensus 31 g~l~v~t~~~~l~~~d-~~---g~~~~~~~~----~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~--------- 89 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TD---GSVKWFFKS----GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE--------- 89 (330)
T ss_dssp SCEECSSTTTTTEEEC-TT---SCEEESSCG----GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG---------
T ss_pred CeEEEEcCCCEEEEEC-CC---CcEEEEEec----CCCcccceEEecCCc-EEEecCc--EEEECC-CCcE---------
Confidence 3456677788888888 42 222222221 334567777777776 5555544 777775 3332
Q ss_pred eeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEE
Q 004789 425 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGF 503 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs 503 (730)
+|.... .........+.+..+..++ ++.|..+|.. ++.......+...+.++...+++.+..|+
T Consensus 90 ---~~~~~~-----------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt 154 (330)
T 3hxj_A 90 ---KWRFDT-----------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS 154 (330)
T ss_dssp ---GGGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred ---EEEEEC-----------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc
Confidence 232211 1111222233366667777 8999999998 88777776666666677777777677788
Q ss_pred CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEE
Q 004789 504 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 583 (730)
Q Consensus 504 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l 583 (730)
.++.|..+|.. ++.+..+......+.++...+++...+ ++ +.|..+| .+++... . ... .. ..+.++
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~----~-~~~-~~---~~~~~~ 220 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW----N-FYA-GY---WTVTRP 220 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE----E-ECC-SS---CCCSCC
T ss_pred CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE----E-Ecc-CC---cceece
Confidence 88999999998 887777765566677888877887544 44 8899999 5543221 1 111 11 357788
Q ss_pred EEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccc
Q 004789 584 QFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 663 (730)
Q Consensus 584 ~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 663 (730)
...++|...+++.++.+..+|. +++.+..+... ...+.++.+.+++ .|+.++.+|.|+.+|. +++.+..+...
T Consensus 221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-- 293 (330)
T 3hxj_A 221 AISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-- 293 (330)
T ss_dssp EECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS--
T ss_pred EECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC--
Confidence 8888887777677788999985 56666555432 2333445555555 5677778889999996 67766555421
Q ss_pred cCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 664 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 664 ~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
...+. ++...+ ++ .|..++.+|.+++......+
T Consensus 294 ------~~~~~--~~~~d~-~g-~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 ------SWIIA--TPVIDE-NG-TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ------SCCCS--CCEECT-TC-CEEEECTTSCEEEEEC----
T ss_pred ------Ccccc--ceEEcC-CC-EEEEEcCCCeEEEEeccccc
Confidence 22344 555555 45 46668899999998876543
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=4.2e-09 Score=122.16 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=152.0
Q ss_pred CCCCCeeEEEEe--CcEEEEee------CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC--------
Q 004789 444 DPKDSISCFALR--GSHLFSAS------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-------- 506 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s------dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg-------- 506 (730)
+|...+..++|| |++||.+. ...|++||+.+|+.+.... +......++|+ || .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 456678889999 88887543 2479999999998655311 11112467899 99 888777764
Q ss_pred -----cEEEEecCCCce--EEEE--cC-CCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCceecceeecccccC
Q 004789 507 -----SILVHCPCTKKT--KAKL--KG-HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 507 -----~I~iwd~~~~~~--~~~~--~~-h~~~V~~l~~spd~~~l~s~s~----dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
.|++|++.++.. ...+ .. |...+.++.|+|||++|+.... +..|+++|+.++... ...+ ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-~~~l----~~ 278 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-LLTV----QG 278 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-CEEE----EC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-eEEE----eC
Confidence 399999987642 2333 33 4456789999999998865432 258999999774311 1111 12
Q ss_pred CCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---
Q 004789 573 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--- 642 (730)
Q Consensus 573 h~~~~~~v~~l~~spdg~~l~~-s~----dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg--- 642 (730)
+. ...... ++++|..|+. +. .+.|..+|+.++.. ...+..+ ...+. .|+++++.|+....++
T Consensus 279 ~~---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 279 DL---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp SS---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEE
T ss_pred CC---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCee
Confidence 22 234444 6777776665 42 25799999987654 2344432 33444 8899998887666543
Q ss_pred eEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCcee
Q 004789 643 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEVE 708 (730)
Q Consensus 643 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D----g~I~iWd~~~~~~~ 708 (730)
.|++|++.++.. ..+... + .+.+. .++++| ++..++....+ ++|..||+.+++..
T Consensus 351 ~l~~~d~~g~~~-~~l~~p-----~--~~~~~--~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 351 RVEQFDYEGKRV-REVALP-----G--LGSVS--GFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEECTTSCEE-EEECCS-----S--SSEEE--ECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEECCCCee-EEeecC-----C--CceEE--eeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 689999986543 333311 1 23344 677788 55544433333 78999999887643
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=1.6e-08 Score=104.67 Aligned_cols=224 Identities=12% Similarity=-0.017 Sum_probs=145.9
Q ss_pred CCCCeeEEEEe--Cc-EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceE
Q 004789 445 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 519 (730)
Q Consensus 445 h~~~V~~l~~s--~~-~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~ 519 (730)
........+|+ |+ ++++.. ++.|..|+. +++ ...+..+...+..++++++| .+++...++.|.+||.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 44566788998 66 455555 799999998 454 34555566778999999999 55555556789999986 5533
Q ss_pred EEEc---C-CCCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEEcCCCceecceeecccccCCCCCCC
Q 004789 520 AKLK---G-HQNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 578 (730)
Q Consensus 520 ~~~~---~-h~~~V~~l~~spd~~~l~s----~s~-------------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~ 578 (730)
.... + ....+++++++++|++.++ |.. .+.|..||..+++... .. + . .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------~~-~-~---~ 188 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------MA-D-L---D 188 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------EE-E-E---S
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE------Ee-c-C---C
Confidence 2221 1 1235678999999998876 332 2467777776543211 11 1 1 3
Q ss_pred CeEEEEEecCCcEEEEE-ec------CcEEEEeCCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 579 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s-~d------g~I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
....++|+||++.|+++ .. +.|++||+..+.. ...+.. ........++++++|++.+ ++.+ .|++|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEE-CCSS-EEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEE-ecCC-cEEEECC
Confidence 56789999999988774 33 6899999875431 112211 1134456789999999444 4444 4999998
Q ss_pred CCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEE
Q 004789 650 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 698 (730)
Q Consensus 650 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~ 698 (730)
.++.+..+... . .+. .++|.| +++.|..++.++..+
T Consensus 266 -~g~~~~~~~~~--------~-~~~--~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQLLGHIPTP--------G-TAS--NCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCEEEEEECS--------S-CCC--EEEECT-TSCEEEEEETTEEEE
T ss_pred -CCCEEEEEECC--------C-cee--EEEEeC-CCCEEEEEcCCeEEE
Confidence 46666666521 2 255 889998 787777777664333
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=2.4e-09 Score=113.13 Aligned_cols=258 Identities=9% Similarity=-0.033 Sum_probs=164.1
Q ss_pred cEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEe----------CCCcEEEeecCCCccccccccccc
Q 004789 355 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQSNKQSLEEENVNM 424 (730)
Q Consensus 355 ~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s----------~dg~I~iWd~~~~~~~~~~~~~~~ 424 (730)
+|.+.|... .....++.. | ..+ .++|+|||++++++. .++.|.+||..+.+....
T Consensus 47 ~vsvID~~t---~~v~~~i~v---G-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~------ 111 (368)
T 1mda_H 47 ENWVSCAGC---GVTLGHSLG---A-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD------ 111 (368)
T ss_dssp EEEEEETTT---TEEEEEEEE---C-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE------
T ss_pred eEEEEECCC---CeEEEEEeC---C-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE------
Confidence 778888863 223333332 1 234 799999999999886 367899888877665221
Q ss_pred eeeEecCCCCeeEeecccCC-----CCCCeeEEEEe--CcEEEEee---CCEEEE--EEcCCceEEEEEcCCCCCeEEEE
Q 004789 425 ESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISI--FSLETFQTLATFANPPPIATYFI 492 (730)
Q Consensus 425 ~~~i~~~~~~~~~~~~~~~~-----h~~~V~~l~~s--~~~l~s~s---dg~I~v--wd~~t~~~~~~~~~~~~~v~~i~ 492 (730)
...++ .......++++ |++++++. ++.|.+ +|..+ +..+..... ..
T Consensus 112 ---------------I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~ 169 (368)
T 1mda_H 112 ---------------IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FH 169 (368)
T ss_dssp ---------------EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CC
T ss_pred ---------------EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eE
Confidence 11000 01234578888 88888776 357888 99887 455542211 22
Q ss_pred EcCCC--eEEEEECCCcEEEEecCC-----CceEEE----EcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee
Q 004789 493 LLPQD--LFAFGFDDSSILVHCPCT-----KKTKAK----LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 561 (730)
Q Consensus 493 ~spdg--~l~sgs~dg~I~iwd~~~-----~~~~~~----~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~ 561 (730)
+.|+| .+++.+.|+.+.+.|+.+ ++.... +.....+. + .+++..++..+. +.+.+.|..+....
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~ 244 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT 244 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce
Confidence 34566 556667788888888876 433211 11112333 3 666777666667 99999999753211
Q ss_pred cceeecccc------cCCCCCCCCeEEEEEecCCcEEEEE-e-c--------CcEEEEeCCCCceeeeecCCCCCCCeEE
Q 004789 562 CSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQLVPDKMDLPITY 625 (730)
Q Consensus 562 ~~~~i~~~~------~~h~~~~~~v~~l~~spdg~~l~~s-~-d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~ 625 (730)
....+. +. .+..+ .....++++||++.++++ . . +.+.++|+.+++.+..+.. ......
T Consensus 245 v~~~~~-~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p~g 318 (368)
T 1mda_H 245 MKAAID-GNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDSDA 318 (368)
T ss_dssp EECCCC-SSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEECE
T ss_pred EEEEEE-ecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCcce
Confidence 111111 00 00000 122237899999998874 3 2 3577999999999888865 336889
Q ss_pred EEEecCCCE-EEEEE-cCCeEEEEECCCceEEEEeec
Q 004789 626 ATYSCDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 626 ~~~spdg~~-l~sgs-~dg~I~iwd~~~~~~~~~~~~ 660 (730)
++|+|||+. +++.. .++.|.++|+.+++.+..+..
T Consensus 319 i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 999999984 55555 489999999999999988863
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.08 E-value=5.5e-09 Score=110.32 Aligned_cols=225 Identities=10% Similarity=-0.065 Sum_probs=144.9
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEE----------CCCcEEEEecCCCceEEEEcCC-------CC
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN 527 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~ 527 (730)
.|.++|..+++.+.++.....+ .+.++||+ .++++. .++.|.+||+.+++.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8999999999999999855555 79999999 777775 3678999999999999988633 12
Q ss_pred CeEEEEEeCCCCEEEEEeC--CCcEEE--EEcCCCceecceeecc----cccCCC-----CCCCCeEEEE----------
Q 004789 528 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCSKFLHS----FQTGLV-----PETTIVNHIQ---------- 584 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~--dg~I~v--wd~~~~~~~~~~~i~~----~~~~h~-----~~~~~v~~l~---------- 584 (730)
....++++|||++++++.. +..+.+ +|+.+ .....+.. ...+.. ...+.+..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 3568999999999998864 456888 88865 11111100 000000 0000000010
Q ss_pred ----------------EecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCC--------CCCCeEEEEEecCCCEEEE
Q 004789 585 ----------------FHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYV 637 (730)
Q Consensus 585 ----------------~spdg~~l~~-s~dg~I~iwd~~~~~--~~~~~~~~~--------h~~~v~~~~~spdg~~l~s 637 (730)
.++++..++. +. +.+.+.|..+.. .+..+.... .......++++||++.+++
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 0333333332 44 677777775432 222221100 0111122689999998887
Q ss_pred EEc-C--------CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCc
Q 004789 638 SCK-S--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESE 706 (730)
Q Consensus 638 gs~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las~s-~Dg~I~iWd~~~~~ 706 (730)
+.. + +.+.++|+.+++.+..+.. | ...+ +++|+| +++ .+++.. .++.|.++|+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g---~~p~--gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISN------G---HDSD--AIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEE------E---EEEC--EEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEEC------C---CCcc--eEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 654 2 3567999999998888763 2 1245 899999 676 677777 59999999999987
Q ss_pred ee
Q 004789 707 VE 708 (730)
Q Consensus 707 ~~ 708 (730)
..
T Consensus 349 vv 350 (368)
T 1mda_H 349 DQ 350 (368)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=6.5e-12 Score=134.10 Aligned_cols=224 Identities=15% Similarity=0.048 Sum_probs=129.8
Q ss_pred CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCC-CeE-E
Q 004789 456 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C 531 (730)
Q Consensus 456 ~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~-~ 531 (730)
+..+++++ ||.|+.||..+|+.+.++.. ..+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 67888888 99999999999999988876 445555566677 777788999999999999988776654321 110 1
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 004789 532 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 610 (730)
Q Consensus 532 l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~ 610 (730)
..+. ++..+++++.|+.|+.||..+++...... .+ . ...++|++..+++ +.++.|+.||.++++.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~------~~----~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS------SA----F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec------CC----C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 34567788889999999999876432211 11 1 2345567777777 5889999999999987
Q ss_pred eeeecCCCCCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 611 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 611 ~~~~~~~~h~~~v~~~~~spdg---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
+..+.... ....+++.+. ..+++++.||.|+.||..+|+.+..... ..++.. ..++++ ++..
T Consensus 153 ~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---------~~pv~~-~~~~~~-dg~~ 217 (369)
T 2hz6_A 153 RWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---------ASPVVA-FYVWQR-EGLR 217 (369)
T ss_dssp CCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---------SSCEEE-EEECTT-SSCE
T ss_pred EEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---------CCceEE-EEEecC-CceE
Confidence 76654211 1222333332 5677888999999999999998776652 122321 334444 4533
Q ss_pred E----EEEeCCCcEEEEeCCCCc----eeeecc
Q 004789 688 I----ALGLTNGRVHVIEPLESE----VEWGKL 712 (730)
Q Consensus 688 l----as~s~Dg~I~iWd~~~~~----~~w~~~ 712 (730)
. +.+ ++.++.+|..+|+ ..|...
T Consensus 218 ~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~ 248 (369)
T 2hz6_A 218 KVMHINVA--VETLRYLTFMSGEVGRITKWKYP 248 (369)
T ss_dssp EECCEEEE--HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred eccceeec--ccceeeeehhcCCcccceeeeec
Confidence 2 122 4567788887777 777654
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=3.5e-09 Score=111.65 Aligned_cols=271 Identities=11% Similarity=0.027 Sum_probs=165.1
Q ss_pred cCCCCCCCeeEeec--CCCcEEEEeecCCCCCcceeeee---cCCCCCCCcEEEEEEecCCCEEEEEeC-----CCcEEE
Q 004789 338 STSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQ-----TATHKL 407 (730)
Q Consensus 338 ~~~spdg~~lat~~--~dg~i~lWd~~~~~~~~~~~~~~---l~~~gh~~~V~~v~fspdg~~L~s~s~-----dg~I~i 407 (730)
...+|||+.+++.. .++.++||.++ .+....+. ....+|-..+..++++++|+.+++-.. ++.|.+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~----~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELT----QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEE----TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEEC----CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 56789999998863 23447888875 12222211 111236688999999999985554433 478888
Q ss_pred eecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE-EEe----eCCEEEEEEcCCceEEEE
Q 004789 408 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSA----SGGKISIFSLETFQTLAT 480 (730)
Q Consensus 408 Wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l-~s~----sdg~I~vwd~~t~~~~~~ 480 (730)
||..+++.. ..+...... ..+...+..++++ +..+ ++. .++.|.+||+.+++..+.
T Consensus 98 ~d~~tg~~~----------~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 98 WDTLNNQLS----------RVIYLPPPI-------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EETTTTEEE----------EEEECCTTT-------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EECCCCeEE----------EEEECChhh-------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 887766531 111110000 0233456788998 4444 433 357999999999988777
Q ss_pred EcCCCCCeE-EEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcC-
Q 004789 481 FANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAV- 556 (730)
Q Consensus 481 ~~~~~~~v~-~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg-~I~vwd~~- 556 (730)
+.+|..... ...+.++| .+.+.+.++.+..|. ..+..++|+|||+.|+++..++ .+..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 765432110 13445577 777777788776553 2467899999999988887766 44444432
Q ss_pred --CCceecceeeccc-ccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCC
Q 004789 557 --GWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 632 (730)
Q Consensus 557 --~~~~~~~~~i~~~-~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg 632 (730)
.+..........+ ..++. +....++++++|..+++. .++.|.+||..+++....... .+...+.+++|+++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSDG 302 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTTS
T ss_pred hcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCCC
Confidence 1100000000000 01222 345679999999887774 778999999856654333322 225678999999999
Q ss_pred CEEEEEEcCCeEEEE
Q 004789 633 KCIYVSCKSGHVKVF 647 (730)
Q Consensus 633 ~~l~sgs~dg~I~iw 647 (730)
.++++.+..+.+.+|
T Consensus 303 ~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPL 317 (343)
T ss_dssp CEEEEECCGGGSGGG
T ss_pred cEEEEeCcccccccc
Confidence 888877655554444
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=1.2e-07 Score=100.62 Aligned_cols=227 Identities=16% Similarity=0.154 Sum_probs=144.2
Q ss_pred CcEEEEee--CCEEEEEEcCCc----eEEEEEc-------CCCCCeEEEEEcCCC-eEEEEECC------CcEEEEecCC
Q 004789 456 GSHLFSAS--GGKISIFSLETF----QTLATFA-------NPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT 515 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t~----~~~~~~~-------~~~~~v~~i~~spdg-~l~sgs~d------g~I~iwd~~~ 515 (730)
+++|+..+ ++.|+++|+.+. +..+++. .....-..+.++|+| ++ ++..+ +.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~V-s~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYI-SALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEE-EEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEE-EcCCCcCCCCCCeEEEEECCC
Confidence 66766666 799999999765 6677763 111234567888999 44 33333 6899999999
Q ss_pred CceEEEEcCCC---CCeEEEEEeCCCCEEEEEe-------------------CCCcEEEEEcCCCceecceeecccccCC
Q 004789 516 KKTKAKLKGHQ---NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGL 573 (730)
Q Consensus 516 ~~~~~~~~~h~---~~V~~l~~spd~~~l~s~s-------------------~dg~I~vwd~~~~~~~~~~~i~~~~~~h 573 (730)
++.+..+.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.... +..+.
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-----I~vg~ 248 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-----LTLGE 248 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE-----EESCT
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE-----EecCC
Confidence 99999986322 2234688899999888874 368999999998543322 22221
Q ss_pred CCCCCCeEEEEE--ecCCcEEEEE-e------cCcEEEEeCCCCce--eeee--cCC---C-----------CCCCeEEE
Q 004789 574 VPETTIVNHIQF--HPDQIHLLSI-H------EGQIDVYEAPTLNH--TSQL--VPD---K-----------MDLPITYA 626 (730)
Q Consensus 574 ~~~~~~v~~l~~--spdg~~l~~s-~------dg~I~iwd~~~~~~--~~~~--~~~---~-----------h~~~v~~~ 626 (730)
.. .....+.| +|++++++++ . +++|.+|....+.. .+.+ ... . .......+
T Consensus 249 ~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 249 EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 10 23445655 9999998873 3 45777666544321 1111 100 0 02456789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCC---ceEEEEeeccccc-----CCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 627 TYSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAYA-----QPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 627 ~~spdg~~l~sgs~-dg~I~iwd~~~---~~~~~~~~~~~~~-----~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+|+||++|+++.. .+.|.+||+.. .+++..+...... +.|. .....+-.++++| |+++|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 99999999998887 48999999863 3555555432000 0000 0001233789999 899888887
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=8.8e-11 Score=125.29 Aligned_cols=185 Identities=15% Similarity=0.072 Sum_probs=106.3
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc-CCCCC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPE 576 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~-~h~~~ 576 (730)
.+++++.|+.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++........ ... ...
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~~-- 85 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQA-- 85 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHTT--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Ccccccc--
Confidence 899999999999999999999988875 45555556667777888889999999999886543211111 000 000
Q ss_pred CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEE
Q 004789 577 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 577 ~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
.+ ++..+ ..+++ +.++.|+.||..+|+.+..+..+ . ...++|++..+++++.|+.|+.||..+|+.+
T Consensus 86 -sp----~~~~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 86 -SP----CRSSD-GILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -CS----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -Cc----eEecC-CEEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11 11123 34555 68899999999999988776532 1 2345678889999999999999999999876
Q ss_pred EEeecccccCCCCcccceeeEEEEEecCCC---CEEEEEeCCCcEEEEeCCCCceeeecc
Q 004789 656 CQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 656 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~---~~las~s~Dg~I~iWd~~~~~~~w~~~ 712 (730)
..+... + .. ..++.+ +. ..+++++.||.|+.||..+++..|...
T Consensus 154 W~~~~~-----~-----~~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYF-----D-----YA--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEE-----E-----EC--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecc-----c-----cc--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 655421 1 11 122222 11 456778899999999999999999864
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=1.6e-07 Score=99.69 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=147.0
Q ss_pred Ee--cCCCEEEEEeC-CCcEEEeecCCCccccccccccceeeEecCCC-CeeEeecccCCCCCCeeEEEEe-CcEEEEee
Q 004789 389 YS--HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSS-KLVMTNDIAADPKDSISCFALR-GSHLFSAS 463 (730)
Q Consensus 389 fs--pdg~~L~s~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s 463 (730)
++ +++++|++.+. ++.|.|+|+.+..... ++-.... .++... . + ...-..+... +..++++.
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p---------~~~k~ie~~~~~~~-~--g-~s~Ph~~~~~pdGi~Vs~~ 155 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREP---------KIIKVIEPEEVKKV-S--G-YSRLHTVHCGPDAIYISAL 155 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC---------EEEEEECHHHHHHH-H--C-EEEEEEEEECSSCEEEEEE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCc---------eeeeeechhhcccc-c--C-CCcccceeECCCeEEEEcC
Confidence 37 88998887665 6899999986552210 1111000 000000 0 0 0112233444 33545444
Q ss_pred -C------CEEEEEEcCCceEEEEEcCCCC---CeEEEEEcCCC-eEEEEE-------------------CCCcEEEEec
Q 004789 464 -G------GKISIFSLETFQTLATFANPPP---IATYFILLPQD-LFAFGF-------------------DDSSILVHCP 513 (730)
Q Consensus 464 -d------g~I~vwd~~t~~~~~~~~~~~~---~v~~i~~spdg-~l~sgs-------------------~dg~I~iwd~ 513 (730)
+ |.|.++|.++++.+.++..... --..+.|+|++ .+++.. .+.+|.+||+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 7899999999999999873322 23468889999 777764 3679999999
Q ss_pred CCCceEEEEcCC-C-CCeEEEEE--eCCCCEEEEEe------CCCcEEEEEcCCCceecceeeccccc----C-------
Q 004789 514 CTKKTKAKLKGH-Q-NRITCLAY--SLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQT----G------- 572 (730)
Q Consensus 514 ~~~~~~~~~~~h-~-~~V~~l~~--spd~~~l~s~s------~dg~I~vwd~~~~~~~~~~~i~~~~~----~------- 572 (730)
.+++.+.++... . .....+.| +|+++++++++ .+++|.+|....++......+. +.. +
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSCCGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCcccccccccccc
Confidence 999888887642 1 23445655 99999888776 4568877766544322111111 000 0
Q ss_pred -CCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC---CceeeeecCCCC------------CCCeEEEEEecCCCE
Q 004789 573 -LVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT---LNHTSQLVPDKM------------DLPITYATYSCDGKC 634 (730)
Q Consensus 573 -h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~---~~~~~~~~~~~h------------~~~v~~~~~spdg~~ 634 (730)
..........|.+++||++|+++ ..+.|.+||+.. .+.+..+..++. .+....++++|||++
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence 00000346789999999999996 567899999853 355555554321 113578999999999
Q ss_pred EEEEE
Q 004789 635 IYVSC 639 (730)
Q Consensus 635 l~sgs 639 (730)
|+++.
T Consensus 395 LyVaN 399 (462)
T 2ece_A 395 VYVTN 399 (462)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99988
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=1.6e-08 Score=110.97 Aligned_cols=239 Identities=9% Similarity=0.046 Sum_probs=160.4
Q ss_pred eEEEEe-----CcEEEEee--CCEEEEEEcCCceEEEEEcCC-CCCeEEEEE-c-CCC-eEEEEE---------------
Q 004789 450 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFIL-L-PQD-LFAFGF--------------- 503 (730)
Q Consensus 450 ~~l~~s-----~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~-~~~v~~i~~-s-pdg-~l~sgs--------------- 503 (730)
-.+++. |++++.+. ++.|.+.|+.+.++...+.-. ......+++ + |++ ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 455553 77777776 578999999999998866533 346778887 5 899 777774
Q ss_pred ---CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCC--------------------------------
Q 004789 504 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------------------------------- 548 (730)
Q Consensus 504 ---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg-------------------------------- 548 (730)
.++.+.++|..+.+...++.--. ....++++|+|+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 24579999999998888876322 456778999999998887543
Q ss_pred ------cEEEEEcCCCceeccee-ecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc----------
Q 004789 549 ------QLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---------- 609 (730)
Q Consensus 549 ------~I~vwd~~~~~~~~~~~-i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~---------- 609 (730)
.|.+.|..+.+. .. +..+..+ ....++.++|||++++++ .+++|.++|+.+.+
T Consensus 249 k~~~i~~V~VID~~~~~~---~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEAS---SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp CSEEETTEEEEECSGGGC---CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CeeEECcEEEEeCcccCC---ceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 355666655110 01 1112222 235679999999999985 67889999998653
Q ss_pred --eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC----------ceEEEEeecccccCCCCcccceeeEE
Q 004789 610 --HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 610 --~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
....... ......++|+|+|...++...|+.|.+||+.+ .+.+.++..+ +. .|| . ....+
T Consensus 321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yq-pGh-~--~~~~g 392 (595)
T 1fwx_A 321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQ-PGH-L--KTVMG 392 (595)
T ss_dssp GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SC-EEE-E--EETTT
T ss_pred cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-cc-ccc-c--eeccc
Confidence 2333322 56789999999994334555689999999987 4556666532 11 122 1 11113
Q ss_pred EEEecCCCCEEEEEeCC--CcE-----------EEEeCCCCc
Q 004789 678 IAAHPLEPNRIALGLTN--GRV-----------HVIEPLESE 706 (730)
Q Consensus 678 v~~sp~~~~~las~s~D--g~I-----------~iWd~~~~~ 706 (730)
.+.+| ||++|+++..- .++ .++|+..++
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45678 89998887632 233 788986554
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=1.7e-07 Score=107.69 Aligned_cols=291 Identities=12% Similarity=0.057 Sum_probs=182.2
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCC-CC-eeEEEEeCcEEEEee-CCEEEE
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI 469 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~-~~-V~~l~~s~~~l~s~s-dg~I~v 469 (730)
+..+++++.++.|..+|..+++. +|............ ... .. -..+++.+..++.++ |+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKAR--TSCCDAVNRGVALWGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEEBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCccccc--cccccCCccceEEECCEEEEEcCCCEEEE
Confidence 45678888889999999988875 56543321110000 000 01 122344566677777 999999
Q ss_pred EEcCCceEEEEEcCCC----CCeEE-EEEcCCCeEEEEEC------CCcEEEEecCCCceEEEEcCCC---C--------
Q 004789 470 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ---N-------- 527 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~----~~v~~-i~~spdg~l~sgs~------dg~I~iwd~~~~~~~~~~~~h~---~-------- 527 (730)
+|..+|+.+..+.... ..+.+ ..+ .++.++++.. ++.|+.+|..+|+.+..+.... .
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 9999999998876421 11111 111 1445555543 5899999999999987775210 0
Q ss_pred --------------------CeEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCceecceeecc
Q 004789 528 --------------------RITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 528 --------------------~V~~l~~spd~~~l~s~s~dg-------------------~I~vwd~~~~~~~~~~~i~~ 568 (730)
....+++.|+...++.++.++ .|..+|..+++..-.....
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~- 289 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT- 289 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-
Confidence 112468888888888887766 3999999998754433221
Q ss_pred cccCCCC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCC----------CCC---------
Q 004789 569 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------MDL--------- 621 (730)
Q Consensus 569 ~~~~h~~----~~~~v~~l~~spdg~---~l~~-s~dg~I~iwd~~~~~~~~~~~~~~----------h~~--------- 621 (730)
.|.. ...+.....+..+|+ .+++ +.+|.++++|..+|+.+....... ...
T Consensus 290 ---~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 290 ---PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred ---CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 1110 001223333344675 4555 488999999999999874332111 000
Q ss_pred ---------------CeEEEEEecCCCEEEEEE------------------------------------cCCeEEEEECC
Q 004789 622 ---------------PITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTS 650 (730)
Q Consensus 622 ---------------~v~~~~~spdg~~l~sgs------------------------------------~dg~I~iwd~~ 650 (730)
.-..++++|+...+++.. .+|.|+.||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 011267888877766532 23789999999
Q ss_pred CceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 651 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 651 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
+|+.+...... ...+ ...... .+.++++++.||.|++||..+++..|....+
T Consensus 447 tG~~~W~~~~~---------~~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 447 KQKAAWKVPYP---------THWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcEEEEccCC---------CCCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99988766531 1122 222233 5678888999999999999999999988654
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=4e-09 Score=110.00 Aligned_cols=267 Identities=12% Similarity=0.083 Sum_probs=170.4
Q ss_pred EEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeCC
Q 004789 387 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 465 (730)
Q Consensus 387 v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg 465 (730)
+.+..+|. +..++.++.|..|| .+++. +|.... +...+.++... +..+..++++
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~------------~~~~~~-----------~~~~~~~~~~~~~g~l~v~t~~ 79 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSV------------KWFFKS-----------GEIIECRPSIGKDGTIYFGSDK 79 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCE------------EESSCG-----------GGEEEECCEETTTTEECCSSCE
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcE------------EEEEec-----------CCCcccceEEecCCcEEEecCc
Confidence 44556665 67777888888888 65553 343221 12234555565 5667777744
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 545 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s 545 (730)
|..+|. +++.+..+...........+. ++.+.+++.++.|..+|.. ++...........+.++...+++. ++.++
T Consensus 80 -l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 80 -VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp -EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred -EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence 888886 665544433332222233333 4477888889999999988 877766665556667777777776 55577
Q ss_pred CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 004789 546 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 625 (730)
Q Consensus 546 ~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 625 (730)
.++.|..+|.. ++....... . . ..+.++.+.+++...+++ +.|..+| .+++.+..+... ...+.+
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~-----~-~---~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~--~~~~~~ 219 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKT-----N-D---AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAG--YWTVTR 219 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEEC-----S-S---CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCS--SCCCSC
T ss_pred CCCEEEEECCC-CCEeEEEec-----C-C---CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccC--Ccceec
Confidence 78999999998 543221111 1 1 356677787888765555 8899999 677776666432 456778
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 626 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 626 ~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
+...++|. |..++.++.|+.++. +++.+..+... ...+. .+...+ ...|..++.+|.|..+|. ++
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--------~~~~~--~~~~~~--~g~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--------KRIES--SPVIGN--TDTIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT--TSCEEEECTTCEEEEECT-TS
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--------CCccc--cceEcC--CCeEEEecCCCCEEEECC-CC
Confidence 88888875 556667888999985 55555544321 11122 334444 346777888889999996 78
Q ss_pred ceeeeccC
Q 004789 706 EVEWGKLP 713 (730)
Q Consensus 706 ~~~w~~~~ 713 (730)
+..|....
T Consensus 285 ~~~~~~~~ 292 (330)
T 3hxj_A 285 TEKWNFET 292 (330)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEEc
Confidence 87787643
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=1.7e-06 Score=87.26 Aligned_cols=212 Identities=12% Similarity=-0.001 Sum_probs=136.4
Q ss_pred CeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE-ECCCcEEEEecCCCceEEE
Q 004789 448 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAK 521 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg-s~dg~I~iwd~~~~~~~~~ 521 (730)
.+.+++|+ ++.|+.+. ++.|..++...+.....+.........+++++++ .++.+ ...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46788888 56666655 6899999998765444443333567899999976 55444 4567899999875433222
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 596 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~---dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~ 596 (730)
..........++++|++..|+.+.. .+.|..+++..... ..+. .... .....+++++++..|+++ .
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~---~~~~---~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILA---QDNL---GLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEE---CTTC---SCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEE---ECCC---CCCcEEEEcCCCCEEEEEECC
Confidence 3222256789999997666655553 36888888875221 1111 1111 357899999988877764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 675 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 675 (730)
.+.|..+|.........+.. ......++.. +..|+.+. .++.|.++|..+++.+..+.. |. ....+
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~------g~-~~~p~- 254 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP------HK-QTRLY- 254 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC------SS-CCCCC-
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc------cc-ccccc-
Confidence 67899999965443333321 3344566654 45555555 468999999999998887753 21 11234
Q ss_pred EEEEEec
Q 004789 676 LVIAAHP 682 (730)
Q Consensus 676 ~~v~~sp 682 (730)
++++.|
T Consensus 255 -gi~~~~ 260 (267)
T 1npe_A 255 -GITIAL 260 (267)
T ss_dssp -CEEEEC
T ss_pred -eeeecC
Confidence 777777
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=8.2e-07 Score=99.95 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=178.0
Q ss_pred CCEEEEEeC-CCcEEEeec-CCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEE
Q 004789 393 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI 469 (730)
Q Consensus 393 g~~L~s~s~-dg~I~iWd~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~v 469 (730)
+..+++++. ++.|..+|. .+++. +|......................+++.+..++.++ |+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE------------EEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEE
Confidence 445777777 888999998 77774 565432211000000000000112344566677777 999999
Q ss_pred EEcCCceEEEEEcCCC----CCeE-EEEEcCCCeEEEEEC------CCcEEEEecCCCceEEEEcCCCCC----------
Q 004789 470 FSLETFQTLATFANPP----PIAT-YFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR---------- 528 (730)
Q Consensus 470 wd~~t~~~~~~~~~~~----~~v~-~i~~spdg~l~sgs~------dg~I~iwd~~~~~~~~~~~~h~~~---------- 528 (730)
+|..+|+.+.+..... ..+. +.... ++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~ 208 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence 9999999988775322 0121 11111 445556554 789999999999988776532110
Q ss_pred ---------------------------e-EEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCceecce
Q 004789 529 ---------------------------I-TCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 529 ---------------------------V-~~l~~spd~~~l~s~s~d----------------g~I~vwd~~~~~~~~~~ 564 (730)
+ ..+++.++...++.++.+ +.|..+|..+++..-..
T Consensus 209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~ 288 (571)
T 2ad6_A 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence 0 235677776777766532 25999999998754332
Q ss_pred eecccccCCC-----CCCCCeEEEEEecCCc---EEEEE-ecCcEEEEeCCCCceeeeecCCCC-----------CCCe-
Q 004789 565 FLHSFQTGLV-----PETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-----------DLPI- 623 (730)
Q Consensus 565 ~i~~~~~~h~-----~~~~~v~~l~~spdg~---~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h-----------~~~v- 623 (730)
... .|. ....++ -+....+|+ .++.+ .+|.++++|..+++.+..+..... ..++
T Consensus 289 ~~~----~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~ 363 (571)
T 2ad6_A 289 QKT----PHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVR 363 (571)
T ss_dssp ESS----TTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEE
T ss_pred cCC----CCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceec
Confidence 221 110 000122 223335775 44454 788999999999998776543210 0111
Q ss_pred -------------------------EEEEEecCCCEEEEEEc-------------------------------------C
Q 004789 624 -------------------------TYATYSCDGKCIYVSCK-------------------------------------S 641 (730)
Q Consensus 624 -------------------------~~~~~spdg~~l~sgs~-------------------------------------d 641 (730)
..++++|+..++++.+. +
T Consensus 364 ~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 443 (571)
T 2ad6_A 364 DPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEM 443 (571)
T ss_dssp CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCC
T ss_pred ccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCC
Confidence 24678888888877643 4
Q ss_pred CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeeccCC
Q 004789 642 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 642 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~ 714 (730)
|.|+.||..+++.+..+... ..+. ...... .+..++.++.||.|+.||..+++..|....+
T Consensus 444 g~l~a~D~~tG~~~W~~~~~---------~~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEK---------FAAW--GGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES---------SCCC--SBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEECCCCCEEEEecCC---------CCcc--ceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 78999999999988776531 1122 111122 3567777999999999999999999997654
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=6.4e-06 Score=96.95 Aligned_cols=325 Identities=9% Similarity=-0.004 Sum_probs=198.1
Q ss_pred CCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCC----CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 342 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 342 pdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~----~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
++|...+. ..++.+..|+.. .+.+..+.... .-....|.++...++|. |..|+.+ .|.+|+..+...
T Consensus 224 ~~g~lwig-t~~~Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~-- 294 (795)
T 4a2l_A 224 SPTRIWVA-TEGAGLFLINPK----TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSF-- 294 (795)
T ss_dssp ETTEEEEE-EBSSCEEEEETT----TTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEE--
T ss_pred CCCCEEEE-ECCCCeEEEeCC----CCeEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeE--
Confidence 45555443 334447778864 23344433210 11346799999999998 5556655 578887665443
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEc------CCCCCeE
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA------NPPPIAT 489 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~------~~~~~v~ 489 (730)
..+...... ...-....|.++... ...|..|+ ++-|..|+..++....... -....|.
T Consensus 295 ---------~~~~~~~~~-----~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~ 360 (795)
T 4a2l_A 295 ---------ASYSSNPVE-----NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVS 360 (795)
T ss_dssp ---------EEECCCTTS-----TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEE
T ss_pred ---------EEEecCCCC-----CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeE
Confidence 111100000 000134679999888 55566666 7889999877654322211 1245689
Q ss_pred EEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcC--------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee
Q 004789 490 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 561 (730)
Q Consensus 490 ~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~ 561 (730)
++...++|.|.+|+.++-|..||..+++....... ....|.++...++|+.|..|+.++-|..||..+++..
T Consensus 361 ~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 361 CIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp EEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 99988888677788888899999887765433211 2467999999989885666777778999999875422
Q ss_pred cceeeccccc-CCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC----CCCCCCeEEEEEecCCCEEE
Q 004789 562 CSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP----DKMDLPITYATYSCDGKCIY 636 (730)
Q Consensus 562 ~~~~i~~~~~-~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~----~~h~~~v~~~~~spdg~~l~ 636 (730)
. +..... ... ..|.++...++|...+++. +.+.+||..+++....... .-....|.++...++|.+.+
T Consensus 441 ~---~~~~~~~l~~---~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 441 N---FNQRNSQLVN---ENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp E---ECTTTSCCSC---SCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred E---eecCCCCcCC---CeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 1 110000 111 4789999998888766655 6699999877654322111 11246789999999888666
Q ss_pred EEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 637 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 637 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.. . +-|+.|+..+++. .+.... ...+-....|. ++...+ ++.+.++. .. .|..|+..+++
T Consensus 514 gt-~-~Gl~~~~~~~~~~--~~~~~~-~~~~l~~~~i~--~i~~d~-~g~lWigT-~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 514 GG-E-EGLSVFKQEGLDI--QKASIL-PVSNVTKLFTN--CIYEAS-NGIIWVGT-RE-GFYCFNEKDKQ 573 (795)
T ss_dssp EE-S-SCEEEEEEETTEE--EECCCS-CSCGGGGSCEE--EEEECT-TSCEEEEE-SS-CEEEEETTTTE
T ss_pred Ee-C-CceEEEeCCCCeE--EEecCC-CCCCCCCCeeE--EEEECC-CCCEEEEe-CC-CceeECCCCCc
Confidence 54 4 5588999887765 222100 00011233466 788777 66655443 44 68888887664
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=1.4e-05 Score=94.01 Aligned_cols=324 Identities=9% Similarity=0.009 Sum_probs=202.4
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCC----CCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 414 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~----~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~ 414 (730)
...++|...+.. .+ .|.+|+.. ...+..+.... .-....|.++...++|. |..|+.++.|..|+.....
T Consensus 269 ~~d~~g~lWigt-~~-Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 269 AMDSQNRLWIGT-FN-DLNIYHEG----TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp EECTTSCEEEEE-SS-CEEEEETT----TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred EEcCCCCEEEEe-CC-hhheEcCC----CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence 344566655543 33 57888864 33444332111 11357899999999998 6778888888888765543
Q ss_pred cccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcC--------C
Q 004789 415 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN--------P 484 (730)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~--------~ 484 (730)
. ..+..... .. .-....|.++... ...|..|+ ++-|..|+..++........ .
T Consensus 342 ~-----------~~~~~~~~---~~---~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 342 F-----------KNIRNIPY---KN---SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp S-----------EEECCCTT---SS---SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred c-----------eEEcCCCC---CC---CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 2 11111100 00 0134578999888 55566666 67899999887765433211 2
Q ss_pred CCCeEEEEEcCCCe-EEEEECCCcEEEEecCCCceEEEEc----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCc
Q 004789 485 PPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 559 (730)
Q Consensus 485 ~~~v~~i~~spdg~-l~sgs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~ 559 (730)
...|.++...++|. |.+|+.++-|..||..+++...... .....|.++...++|+..+. +. +-+.+||..+++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCe
Confidence 35789999888884 9999998889999998876543322 13467999999888876554 44 458899988753
Q ss_pred eecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-----CCCCCCeEEEEEecCCCE
Q 004789 560 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----DKMDLPITYATYSCDGKC 634 (730)
Q Consensus 560 ~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~spdg~~ 634 (730)
........ ...+.. ...|.++...++|+..+++. +.+..||..+++. .+.. ......|.++...++|.+
T Consensus 483 ~~~~~~~~-~~~~~~--~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~l 556 (795)
T 4a2l_A 483 FTTIEKEK-DGTPVV--SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGII 556 (795)
T ss_dssp EEECCBCT-TCCBCC--CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred EEEccccc-cccccC--CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence 22111000 000101 14689999999998777655 6799999876654 3321 012457889999899886
Q ss_pred EEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 635 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 635 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.++. .. -|..||..+++... +.... |-....|+ ++...+ ++++.+++ ++.|..|++.++.
T Consensus 557 WigT-~~-Gl~~~d~~~~~~~~-~~~~~----gl~~~~i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 557 WVGT-RE-GFYCFNEKDKQIKR-YNTTN----GLPNNVVY--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EEEE-SS-CEEEEETTTTEEEE-ECGGG----TCSCSCEE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred EEEe-CC-CceeECCCCCcEEE-eCCCC----CCchhheE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 6544 34 58899988775433 32111 22234466 777777 66665554 3567788887654
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=4.3e-07 Score=104.41 Aligned_cols=290 Identities=14% Similarity=0.111 Sum_probs=175.9
Q ss_pred CCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCC-----CC-CcE-EEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 344 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 344 g~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~g-----h~-~~V-~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
+..+++++.++.|.-+|... .+..-++...... +. ..+ ..+++ .+..+++++.|+.|..+|..+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~- 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAAS---GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA- 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTT---CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE-
T ss_pred CCEEEEECCCCeEEEEECCC---ChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE-
Confidence 45566666677777777652 2233333221100 00 000 11222 345688888999999999988875
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEeCcEEEEee-------CCEEEEEEcCCceEEEEEcCCC---
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP--- 485 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-------dg~I~vwd~~t~~~~~~~~~~~--- 485 (730)
+|....... .....+. .....+..++++. +|.|..+|..+|+.+..+....
T Consensus 140 -----------~W~~~~~~~-------~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 201 (668)
T 1kv9_A 140 -----------IWSQQTTDP-------AKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP 201 (668)
T ss_dssp -----------EEEEECSCT-------TSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred -----------eeeeccCCC-------CCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC
Confidence 565332110 0001111 1112344444443 3899999999999998875311
Q ss_pred C----------------------------CeEEEEEcCCC-eEEEEECCC-------------------cEEEEecCCCc
Q 004789 486 P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCTKK 517 (730)
Q Consensus 486 ~----------------------------~v~~i~~spdg-~l~sgs~dg-------------------~I~iwd~~~~~ 517 (730)
. ....+++.|++ .++.++.++ .|..+|.++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~ 281 (668)
T 1kv9_A 202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK 281 (668)
T ss_dssp TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred CccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence 0 01246788877 788877665 49999999999
Q ss_pred eEEEEcC--CC-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCceecceeecc------c--ccCC----
Q 004789 518 TKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHS------F--QTGL---- 573 (730)
Q Consensus 518 ~~~~~~~--h~-------~~V~~l~~spd~~---~l~s~s~dg~I~vwd~~~~~~~~~~~i~~------~--~~~h---- 573 (730)
.+-.++. |. .+.....+..+|+ .++.++.+|.++++|..+++......+.. + ..+.
T Consensus 282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~ 361 (668)
T 1kv9_A 282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA 361 (668)
T ss_dssp EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccc
Confidence 9887764 22 2222233334665 68889999999999999987652211110 0 0000
Q ss_pred -----C-------C-C--CCCeEEEEEecCCcEEEEE-------------------------------------ecCcEE
Q 004789 574 -----V-------P-E--TTIVNHIQFHPDQIHLLSI-------------------------------------HEGQID 601 (730)
Q Consensus 574 -----~-------~-~--~~~v~~l~~spdg~~l~~s-------------------------------------~dg~I~ 601 (730)
. + . ...-..++++|+...+++. .+|.|.
T Consensus 362 ~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~ 441 (668)
T 1kv9_A 362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL 441 (668)
T ss_dssp TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred ccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEE
Confidence 0 0 0 0001136888877666641 137799
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 602 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
.||+.+++.+-.... ..+.....+...+.++++|+.||.|++||..+|+.+..+..
T Consensus 442 A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 442 AWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 999999998776653 23334445556788999999999999999999999988764
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.87 E-value=8.5e-07 Score=99.85 Aligned_cols=246 Identities=12% Similarity=0.092 Sum_probs=152.1
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEeCcEEEEee-------C
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------G 464 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~l~s~s-------d 464 (730)
+..+++++.|+.+..+|..+++. +|....+... ....+. .....+..+++++ +
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~-------~~~~~~~~P~v~~g~v~vg~~~~~~~~~ 175 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPK-------VGSTLTQAPFVAKDTVLMGCSGAELGVR 175 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEEECBCGGGTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCC-------ccceeccCCEEECCEEEEEecCCccCCC
Confidence 55688888899999999988875 5553221100 000111 1112334444443 5
Q ss_pred CEEEEEEcCCceEEEEEcCCCCC-------------------------------------e-EEEEEcCCC-eEEEEECC
Q 004789 465 GKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFDD 505 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~-------------------------------------v-~~i~~spdg-~l~sgs~d 505 (730)
+.|..+|..+|+.+.++...... + ..+++.++. .++.+..+
T Consensus 176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~ 255 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN 255 (571)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence 89999999999998877632211 0 135666765 66655532
Q ss_pred ----------------CcEEEEecCCCceEEEEcC--CCC----CeEE---EEEeCCCC---EEEEEeCCCcEEEEEcCC
Q 004789 506 ----------------SSILVHCPCTKKTKAKLKG--HQN----RITC---LAYSLSLN---VLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 506 ----------------g~I~iwd~~~~~~~~~~~~--h~~----~V~~---l~~spd~~---~l~s~s~dg~I~vwd~~~ 557 (730)
+.|..+|.++|+.+-.++. |.. .+.. +....+|+ .++.++.+|.++++|..+
T Consensus 256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 335 (571)
T 2ad6_A 256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN 335 (571)
T ss_dssp CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTT
T ss_pred CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCC
Confidence 3599999999998877753 211 1111 22234674 577788999999999999
Q ss_pred Cceecceeecc-c--------ccCC-------------C-----CC-C--CCeEEEEEecCCcEEEEE-e----------
Q 004789 558 WKKLCSKFLHS-F--------QTGL-------------V-----PE-T--TIVNHIQFHPDQIHLLSI-H---------- 596 (730)
Q Consensus 558 ~~~~~~~~i~~-~--------~~~h-------------~-----~~-~--~~v~~l~~spdg~~l~~s-~---------- 596 (730)
++......+.. . ..+. . +. . ..-..++++|+...+++. .
T Consensus 336 G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 336 GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence 87654332210 0 0000 0 00 0 001346788887777763 2
Q ss_pred ---------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 597 ---------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 597 ---------------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
+|.|..||..+++.+.++... ..+.+..+...+..+++++.||.|+.||.
T Consensus 416 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 416 LPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred cccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 367999999999987776532 22333333445677888999999999999
Q ss_pred CCceEEEEeec
Q 004789 650 STLELRCQINL 660 (730)
Q Consensus 650 ~~~~~~~~~~~ 660 (730)
.+|+.+..+..
T Consensus 493 ~tG~~lw~~~~ 503 (571)
T 2ad6_A 493 KDGKELWNFKM 503 (571)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 99999988764
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=6.4e-07 Score=89.42 Aligned_cols=217 Identities=13% Similarity=-0.003 Sum_probs=143.4
Q ss_pred ceEEEEEcCCC-CCeEEEEEcCCC-eEEEEEC--CCcEEEEecCCCceEEEEcCCC-CCeEEEEEeCCCCEEEE-EeCCC
Q 004789 475 FQTLATFANPP-PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVS-SGADA 548 (730)
Q Consensus 475 ~~~~~~~~~~~-~~v~~i~~spdg-~l~sgs~--dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s-~s~dg 548 (730)
.+.+.++.... .....++|++++ .+++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+. .-.++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 45566665332 235799999989 4444443 5799999999999998875322 223355555 445554 44678
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT 624 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~ 624 (730)
.+.++|..+.+.... +..+ . .. ...+++||+.++++ .++.|.++|..+.+.+..+....+. ..+.
T Consensus 87 ~v~viD~~t~~v~~~-----i~~g-~---~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKN-----FTHQ-M---KD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEEEETTTTEEEEE-----EECC-S---SS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCCCcEEEE-----EECC-C---CC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 999999998654332 2222 1 11 23466788888875 5678999999999988887653221 2467
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC----CCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEE
Q 004789 625 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 700 (730)
Q Consensus 625 ~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iW 700 (730)
.+.|. +|...+....++.|.+.|..+++.+..+......+ .++ .......+++|+|.....++++...++|.+.
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 88888 77544444457999999999999999887531100 011 1111233999999444577788788999999
Q ss_pred eCCCCc
Q 004789 701 EPLESE 706 (730)
Q Consensus 701 d~~~~~ 706 (730)
++...+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 987653
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.81 E-value=6.6e-06 Score=82.84 Aligned_cols=229 Identities=15% Similarity=0.104 Sum_probs=143.3
Q ss_pred CcEEEEeeCCEEEEEEcCCceE-----EEEEcCCCCCeEEEEEcCCC-eEEE-EECCCcEEEEecCCCceEEEEcCCCCC
Q 004789 456 GSHLFSASGGKISIFSLETFQT-----LATFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKGHQNR 528 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~-----~~~~~~~~~~v~~i~~spdg-~l~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~ 528 (730)
|.+|+.+..+.|+.+++..... ...+......+..++|++++ .|+. -..++.|..+++..+.....+......
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 3566666666888888875432 11122122356799999976 5544 445679999998866544434333357
Q ss_pred eEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e--cCcEEEE
Q 004789 529 ITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVY 603 (730)
Q Consensus 529 V~~l~~spd~~~l~s~-s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~--dg~I~iw 603 (730)
...+++++++..|+.+ ...+.|.++++..... ..+. ..+. .....++++|++..|+.+ . .+.|..+
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~~--~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLF--DTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE--CSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEEE--ECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 8899999976555544 4567899999876321 1111 1111 356899999976666653 2 3678888
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
++. +.....+... .......+++++++..|+.+.. .+.|.+++..+......+. +. . .+.+++..
T Consensus 152 ~~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-------~~-~---~P~gi~~d- 217 (267)
T 1npe_A 152 HMD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-------GL-Q---YPFAVTSY- 217 (267)
T ss_dssp ETT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-------CC-C---SEEEEEEE-
T ss_pred ecC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-------CC-C---CceEEEEe-
Confidence 885 4333333221 2456789999998877765554 5899999998655433332 10 1 12255543
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 683 LEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
++..+++....+.|.+++..+++..
T Consensus 218 -~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 -GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp -TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCCce
Confidence 3445555556789999999988654
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=2.2e-06 Score=96.46 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=153.9
Q ss_pred EEEecCCCE----EEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCee-EEEEeCcEEEE
Q 004789 387 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFS 461 (730)
Q Consensus 387 v~fspdg~~----L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~l~s 461 (730)
++++|.+.. ++.++.|+.+..+|..+++. +|....+... ....+. .....+..+++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~-------~~~~~~ssP~v~~g~V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIK-------VGSTLTIAPYVVKDKVII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCC-------ccceeecCCEEECCEEEE
Confidence 456554544 88888999999999988875 5653221100 000111 11123334444
Q ss_pred ee-------CCEEEEEEcCCceEEEEEcCCCCC-------------------------------------e-EEEEEcCC
Q 004789 462 AS-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQ 496 (730)
Q Consensus 462 ~s-------dg~I~vwd~~t~~~~~~~~~~~~~-------------------------------------v-~~i~~spd 496 (730)
++ +|.|+.+|.++|+.+..+...... + ..+++.++
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 43 589999999999998877633211 0 13456666
Q ss_pred C-eEEEEECC----------------CcEEEEecCCCceEEEEcCCCC----------CeEEEEEe-CCC---CEEEEEe
Q 004789 497 D-LFAFGFDD----------------SSILVHCPCTKKTKAKLKGHQN----------RITCLAYS-LSL---NVLVSSG 545 (730)
Q Consensus 497 g-~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~h~~----------~V~~l~~s-pd~---~~l~s~s 545 (730)
. .++.+..+ +.|..+|.++|+.+-.++.... ++. +... .+| ..++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 6 77766654 3899999999999877764211 121 2222 567 4677788
Q ss_pred CCCcEEEEEcCCCceecceeecc-------c--ccCC-------------C-----C---CCCCeEEEEEecCCcEEEEE
Q 004789 546 ADAQLCVWDAVGWKKLCSKFLHS-------F--QTGL-------------V-----P---ETTIVNHIQFHPDQIHLLSI 595 (730)
Q Consensus 546 ~dg~I~vwd~~~~~~~~~~~i~~-------~--~~~h-------------~-----~---~~~~v~~l~~spdg~~l~~s 595 (730)
.+|.++++|..+++......+.. + ..+. . | ....-..++++|+...+++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999987654332210 0 0000 0 0 00001246677766655441
Q ss_pred ----------------------------------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 004789 596 ----------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 635 (730)
Q Consensus 596 ----------------------------------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 635 (730)
..|.|..||+.+++.+-.... ..+...-.+...+.++
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~v 487 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLV 487 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEE
Confidence 236788999999988766643 1222222233457788
Q ss_pred EEEEcCCeEEEEECCCceEEEEeec
Q 004789 636 YVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 636 ~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
+.++.||.++.||..+|+.+..+..
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCeEEEEECCCCCEEEEeeC
Confidence 8899999999999999999988764
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=4.8e-07 Score=89.22 Aligned_cols=200 Identities=12% Similarity=0.030 Sum_probs=128.7
Q ss_pred eEEEEEcCCCC-CeEEEEEcCCC-eEEEEECCC--cEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEe-CCCcE
Q 004789 476 QTLATFANPPP-IATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQL 550 (730)
Q Consensus 476 ~~~~~~~~~~~-~v~~i~~spdg-~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~dg~I 550 (730)
+.+.++..... -...+.|+ ++ ++.+.+.+| .|+++|+.+++.+..+... .........+++..|.... .++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 44556642222 23678888 67 666666665 8999999999999888643 2333332333455555544 58899
Q ss_pred EEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEEE
Q 004789 551 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 626 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~~ 626 (730)
.+||..+.+........ .. ...+++|++.|+.+ .++.|.++|..+.+.+..+...... ..+..+
T Consensus 110 ~v~D~~t~~~~~ti~~~-----~e-------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYD-----GE-------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EEEETTTCCEEEEEECS-----SC-------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEEECccCcEEEEEECC-----CC-------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 99999996554332222 11 23344678877775 4678999999999988887653222 334567
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCC---CC-cccceeeEEEEEecCCCCEEEEEe
Q 004789 627 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP---GT-ISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 627 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~---gh-~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.|. +|+..+..-.++.|.+.|..+|+.+..+......+. .+ .....+ ++||+|....+++||-
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlN--GIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLN--GIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEE--EEEEETTTTEEEEEET
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceE--EEEEcCCCCEEEEECC
Confidence 776 776554444678999999999999999886533221 01 012234 9999994444555553
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.76 E-value=6.6e-06 Score=92.58 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=174.9
Q ss_pred CCEEEEEeC-CCcEEEeec-CCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE--eCcE----EEEee-
Q 004789 393 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSH----LFSAS- 463 (730)
Q Consensus 393 g~~L~s~s~-dg~I~iWd~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~--s~~~----l~s~s- 463 (730)
+..+++++. ++.|.-+|. .+++. +|....+.................+++ .+.. ++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI------------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE------------EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 445777777 788999998 77774 565433211000000000001123455 4333 66676
Q ss_pred CCEEEEEEcCCceEEEEEcCCC----CCeE-EEEEcCCCeEEEEE------CCCcEEEEecCCCceEEEEcCCCCC----
Q 004789 464 GGKISIFSLETFQTLATFANPP----PIAT-YFILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQNR---- 528 (730)
Q Consensus 464 dg~I~vwd~~t~~~~~~~~~~~----~~v~-~i~~spdg~l~sgs------~dg~I~iwd~~~~~~~~~~~~h~~~---- 528 (730)
|+.+..+|..+|+.+....... ..+. ...+. ++.+++++ .++.|+.+|.++|+.+-.+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 9999999999999988765332 0121 11121 45555554 3789999999999988776532110
Q ss_pred ---------------------------------e-EEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCC
Q 004789 529 ---------------------------------I-TCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGW 558 (730)
Q Consensus 529 ---------------------------------V-~~l~~spd~~~l~s~s~d----------------g~I~vwd~~~~ 558 (730)
+ ..+++.++...++.++.+ +.|..+|.+++
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG 288 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG 288 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence 0 135677777788877765 37999999998
Q ss_pred ceecceeecccccCCC-----CCCCCeEEEEEe-cCC---cEEEEE-ecCcEEEEeCCCCceeeeecCCC----------
Q 004789 559 KKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQ---IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK---------- 618 (730)
Q Consensus 559 ~~~~~~~i~~~~~~h~-----~~~~~v~~l~~s-pdg---~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~---------- 618 (730)
+..-..... .|. ....++ -+... .+| +.++.+ .+|.++++|.++++.+.......
T Consensus 289 ~~~W~~q~~----~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 289 EAKFGYQKT----PHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp CEEEEEESS----TTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred ceeeEeecC----CCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 764332221 111 000111 12222 467 445544 88999999999999876654211
Q ss_pred -CCCCe--------------------------EEEEEecCCCEEEEEE--------------------------------
Q 004789 619 -MDLPI--------------------------TYATYSCDGKCIYVSC-------------------------------- 639 (730)
Q Consensus 619 -h~~~v--------------------------~~~~~spdg~~l~sgs-------------------------------- 639 (730)
...++ ..++++|+..++++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 01111 2467777777666532
Q ss_pred -------cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeecc
Q 004789 640 -------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 640 -------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~~~ 712 (730)
.+|.|+.||+.+++.+...... .+++.-.++ . .+.++..++.||.|+.||..+|+..|...
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---------~~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMER---------FAVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCC---------CCccCcceE--e-cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 3478999999999887666421 011100111 1 46677789999999999999999999885
Q ss_pred CC
Q 004789 713 PF 714 (730)
Q Consensus 713 ~~ 714 (730)
.+
T Consensus 512 l~ 513 (599)
T 1w6s_A 512 IP 513 (599)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.76 E-value=4.1e-06 Score=94.34 Aligned_cols=290 Identities=12% Similarity=0.051 Sum_probs=171.1
Q ss_pred CEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEEEEee-CCEEEEEEc
Q 004789 394 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSL 472 (730)
Q Consensus 394 ~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l~s~s-dg~I~vwd~ 472 (730)
..+++++.++.|..+|..+++. +|............ ........+++.+..++.++ ++.|..+|.
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~ 134 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKR------------LWTYNHRLPDDIRP--CCDVVNRGAAIYGDKVFFGTLDASVVALNK 134 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCE------------EEEEECCCCTTCCC--SSCSCCCCCEEETTEEEEEETTTEEEEEES
T ss_pred CEEEEEcCCCCEEEEECCCCcE------------EEEEcCCCCccccc--ccccCCCccEEECCEEEEEeCCCEEEEEEC
Confidence 3466666644588888888775 56532211000000 00000122344566677777 999999999
Q ss_pred CCceEEEEEcCCCC----CeE-EEEEcCC---C--eEEEEE------CCCcEEEEecCCCceEEEEcCCCCCe-------
Q 004789 473 ETFQTLATFANPPP----IAT-YFILLPQ---D--LFAFGF------DDSSILVHCPCTKKTKAKLKGHQNRI------- 529 (730)
Q Consensus 473 ~t~~~~~~~~~~~~----~v~-~i~~spd---g--~l~sgs------~dg~I~iwd~~~~~~~~~~~~h~~~V------- 529 (730)
++|+.+........ .+. ...+..+ | .+++++ .++.|+.+|..+|+.+-........+
T Consensus 135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~ 214 (582)
T 1flg_A 135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKD 214 (582)
T ss_dssp SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEE
T ss_pred CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcc
Confidence 99999887764321 111 1112222 3 555654 37899999999998876553211000
Q ss_pred ----------------------------------EEEEEeCCCCEEEEEeC--------------------C----CcEE
Q 004789 530 ----------------------------------TCLAYSLSLNVLVSSGA--------------------D----AQLC 551 (730)
Q Consensus 530 ----------------------------------~~l~~spd~~~l~s~s~--------------------d----g~I~ 551 (730)
..++++|+...++.++. | +.|.
T Consensus 215 ~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~ 294 (582)
T 1flg_A 215 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQV 294 (582)
T ss_dssp EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEE
T ss_pred cccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEE
Confidence 13567777777776653 2 5799
Q ss_pred EEEcCCCceecceeecccccCCC-----CCCCCeEEEEEe-cCCc---EEEEE-ecCcEEEEeCCCCceeeeecCCCCC-
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD- 620 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~-----~~~~~v~~l~~s-pdg~---~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~- 620 (730)
.+|..+++..-..... .|. ....++. +... .+|+ .++.+ .+|.++++|..+++.+..+......
T Consensus 295 AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 295 GVDPSSGEVKWFYQHT----PNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp EECTTTCCEEEEEESS----TTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred EEeCCCCCEEEEEeCC----CCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 9999998765432221 111 0001111 2222 4674 45554 8899999999999987665432100
Q ss_pred ----------CC--------------------------------eEEEEEecCCCEEEEEE-------------------
Q 004789 621 ----------LP--------------------------------ITYATYSCDGKCIYVSC------------------- 639 (730)
Q Consensus 621 ----------~~--------------------------------v~~~~~spdg~~l~sgs------------------- 639 (730)
.+ -..++++|+...+++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 01356677666665543
Q ss_pred --------------cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 640 --------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 640 --------------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
.+|.|+.||+.+++.+....... .++...++ . .+.+++.++.||.++.||..+|
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-agglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-AGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-TTTEEEEECTTSEEEEEETTTC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceE--e-CCCEEEEECCCCcEEEEECCCC
Confidence 25889999999999886665310 11110111 1 3567888999999999999999
Q ss_pred ceeeeccCC
Q 004789 706 EVEWGKLPF 714 (730)
Q Consensus 706 ~~~w~~~~~ 714 (730)
+..|....+
T Consensus 518 ~~lW~~~~~ 526 (582)
T 1flg_A 518 KELWKFQTG 526 (582)
T ss_dssp CEEEEEECS
T ss_pred CEEEEecCC
Confidence 999998655
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.73 E-value=6.4e-06 Score=82.18 Aligned_cols=200 Identities=13% Similarity=0.057 Sum_probs=132.4
Q ss_pred CcEEEEEEecCCCEEEEEeC--CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeCcEE
Q 004789 382 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 459 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~--dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~l 459 (730)
.....++|+|+|...++.+. ++.|.+.|..+++. +.....+ .......+++.++.|
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------------------~~~i~l~-~~~fgeGi~~~g~~l 78 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------------------ENIHKMD-DSYFGEGLTLLNEKL 78 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------------------EEEEECC-TTCCEEEEEEETTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------------------EEEEecC-CCcceEEEEEeCCEE
Confidence 34678999999754444443 57888888776654 2221111 112223566666666
Q ss_pred EEee--CCEEEEEEcCCceEEEEEcCC-CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCC-----CCeE
Q 004789 460 FSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT 530 (730)
Q Consensus 460 ~s~s--dg~I~vwd~~t~~~~~~~~~~-~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~V~ 530 (730)
+.+. ++.+.++|..+++.+.++... .. ...+++|| .++++..++.|.++|..+.+.+..+.-.. ..++
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 6666 899999999999999998744 22 23355688 66666678899999999998888775321 2467
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc-----cCCCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEE
Q 004789 531 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-----TGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY 603 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~-----~~h~~~~~~v~~l~~spdg~~l~~-s-~dg~I~iw 603 (730)
.+.|. +|...+....++.|.+.|..+++......+.... ..+. .......|+|+|+++.+++ + ..+.+...
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~-~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR-DIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT-TCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc-ccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 88888 6755555556789999999998765444332110 0111 0124689999999888777 5 56778888
Q ss_pred eCCCC
Q 004789 604 EAPTL 608 (730)
Q Consensus 604 d~~~~ 608 (730)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 77543
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=1.3e-05 Score=90.13 Aligned_cols=248 Identities=12% Similarity=0.052 Sum_probs=149.0
Q ss_pred CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEeC----c-EEEEee----
Q 004789 393 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG----S-HLFSAS---- 463 (730)
Q Consensus 393 g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s~----~-~l~s~s---- 463 (730)
+..++.++.|+.+..+|..+++. +|....+...... .....++ ...+ + .+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~------------~W~~~~~~~~~~~--~~~~sP~---v~~~~~~G~~~v~vg~~~~e 179 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKV------------VWKKKFADHGAGY--TMTGAPT---IVKDGKTGKVLLIHGSSGDE 179 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCE------------EEEEECSCGGGTC--BCCSCCE---EEECTTTCCEEEEECCBCGG
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EeeecCCCCCcCc--ccccCCE---EeCCCcCCcEEEEEeccccc
Confidence 45688888999999999988875 4543221100000 0011111 1112 1 455543
Q ss_pred ---CCEEEEEEcCCceEEEEEcCCCCCe-----------------------------------------EEEEEcCCC-e
Q 004789 464 ---GGKISIFSLETFQTLATFANPPPIA-----------------------------------------TYFILLPQD-L 498 (730)
Q Consensus 464 ---dg~I~vwd~~t~~~~~~~~~~~~~v-----------------------------------------~~i~~spdg-~ 498 (730)
+|.|..+|..+|+.+.........+ ..+++.|+. .
T Consensus 180 ~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~ 259 (582)
T 1flg_A 180 FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT 259 (582)
T ss_dssp GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE
T ss_pred cCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCE
Confidence 6899999999999887664321100 134566666 6
Q ss_pred EEEEEC--------------------C----CcEEEEecCCCceEEEEcC--CCC----CeEE-EEEe---CCCC---EE
Q 004789 499 FAFGFD--------------------D----SSILVHCPCTKKTKAKLKG--HQN----RITC-LAYS---LSLN---VL 541 (730)
Q Consensus 499 l~sgs~--------------------d----g~I~iwd~~~~~~~~~~~~--h~~----~V~~-l~~s---pd~~---~l 541 (730)
++.+.. | +.|..+|..+|+.+-.++. |.. .+.. +.+. .+|+ .+
T Consensus 260 vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v 339 (582)
T 1flg_A 260 IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKAT 339 (582)
T ss_dssp EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEE
Confidence 665552 2 5899999999999887753 321 1111 1222 4674 67
Q ss_pred EEEeCCCcEEEEEcCCCceecceeecc-c--------ccC-------CCC--------CC------------CCeEEEEE
Q 004789 542 VSSGADAQLCVWDAVGWKKLCSKFLHS-F--------QTG-------LVP--------ET------------TIVNHIQF 585 (730)
Q Consensus 542 ~s~s~dg~I~vwd~~~~~~~~~~~i~~-~--------~~~-------h~~--------~~------------~~v~~l~~ 585 (730)
+.++.+|.++++|..+++......+.. . ..+ ..+ .. ..-..+++
T Consensus 340 ~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~ 419 (582)
T 1flg_A 340 AHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAY 419 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEE
T ss_pred EEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceE
Confidence 889999999999999987653322210 0 000 000 00 00124567
Q ss_pred ecCCcEEEE-Ee---------------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecC
Q 004789 586 HPDQIHLLS-IH---------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 586 spdg~~l~~-s~---------------------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spd 631 (730)
+|+...+++ .. +|.|..||+.+++.+-+.... .++..-.....
T Consensus 420 dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~ta 496 (582)
T 1flg_A 420 SQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATA 496 (582)
T ss_dssp CTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEET
T ss_pred CCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeC
Confidence 776555544 21 477999999999987666432 22222222335
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 632 GKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 632 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
+.+++.|+.||.++.||.++|+.+..+..
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 67888899999999999999999988764
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=3.7e-05 Score=90.23 Aligned_cols=294 Identities=11% Similarity=0.015 Sum_probs=180.8
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcE
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 458 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~ 458 (730)
....|.++...++|. |..|+.++-|..++...... ..+........ ...-....|.++... ...
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~-----------~~~~~~~~~~~---~~~l~~~~v~~i~~d~~g~ 375 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF-----------HTWSYSPTQMN---ESSLSNKVVSSVCDDGQGK 375 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC-----------EEEC----CCC---SSCCSSSCEEEEEECTTSC
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc-----------eeeccCccccc---cCCCCCcceEEEEEcCCCC
Confidence 457899999999998 77788777888887665443 11111000000 000134568888888 455
Q ss_pred EEEee-CCEEEEEEcCCceEEEEE---cCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEc--CCCCCeEEE
Q 004789 459 LFSAS-GGKISIFSLETFQTLATF---ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCL 532 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~---~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l 532 (730)
|..|+ ++-|..||..++...... ......|.++...++|.|.+|+.++-|..+|..+++...... .....|.++
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 66666 777999998765433211 123467889988877766667877789999988775433221 134679999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 004789 533 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 533 ~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~ 612 (730)
...++|+..+ |+. +-|..||..+++... +. ...........|.++...++|...+++.++.+..||..+++. .
T Consensus 456 ~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~ 528 (781)
T 3v9f_A 456 YEDKNKKIWI-GTH-AGVFVIDLASKKVIH---HY-DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-R 528 (781)
T ss_dssp EECTTSEEEE-EET-TEEEEEESSSSSCCE---EE-CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-E
T ss_pred EECCCCCEEE-EEC-CceEEEeCCCCeEEe---cc-cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-E
Confidence 8888876544 555 568899987743211 11 001000001578999999999877776656688899876543 3
Q ss_pred eecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 613 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 613 ~~~~~--~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
.+... -....|.++...++|.+.++. .+|.|..||..+++.. .+.... |-....|. ++...+ ++.+.++
T Consensus 529 ~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~----gl~~~~i~--~i~~d~-~g~lW~~ 599 (781)
T 3v9f_A 529 KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKE----GLPNTHIR--AISEDK-NGNIWAS 599 (781)
T ss_dssp EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGG----TCSCCCCC--EEEECS-SSCEEEE
T ss_pred EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccC----CCCCceEE--EEEECC-CCCEEEE
Confidence 34321 114578899988888865554 4676589998877633 232111 22233466 777777 6665554
Q ss_pred EeCCCcEEEEeCCCCc
Q 004789 691 GLTNGRVHVIEPLESE 706 (730)
Q Consensus 691 ~s~Dg~I~iWd~~~~~ 706 (730)
+.+| |..+++.+..
T Consensus 600 -t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 600 -TNTG-ISCYITSKKC 613 (781)
T ss_dssp -CSSC-EEEEETTTTE
T ss_pred -cCCc-eEEEECCCCc
Confidence 4444 7777776553
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.71 E-value=1.3e-06 Score=86.03 Aligned_cols=198 Identities=11% Similarity=-0.008 Sum_probs=129.2
Q ss_pred eEEEEEcCCC-CCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE--EEEEeCCCCEEEEEeCCCcEE
Q 004789 476 QTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT--CLAYSLSLNVLVSSGADAQLC 551 (730)
Q Consensus 476 ~~~~~~~~~~-~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~--~l~~spd~~~l~s~s~dg~I~ 551 (730)
+.+.++.... .-...+.|+ ++ ++.+.+.+|.|+++|+.+++.+..+ - ..... .+++.. ++..+..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 4455564222 234678887 35 7777778889999999999988877 2 22333 355542 23444455689999
Q ss_pred EEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEEEE
Q 004789 552 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYAT 627 (730)
Q Consensus 552 vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~~~ 627 (730)
+||..+.+........ ..-..++ +|++.|+.+ .++.|.++|..+.+.+..+....+. ..++.+.
T Consensus 120 V~D~~Tl~~~~ti~~~----------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTTRYS----------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEEEECS----------SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEEEeCC----------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999996554332221 1112333 668888876 5788999999999988887654322 2456677
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccC-----CCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 628 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ-----PGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 628 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~-----~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
|. +|+..+....++.|.+.|..+++.+..+......+ ........+ ++||+|...++++||-
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN--GIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN--GIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE--EEEECTTTCCEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE--EEEEcCCCCEEEEeCC
Confidence 76 77644444457899999999999999988653211 011122345 9999996566777764
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=1.6e-05 Score=77.70 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=128.0
Q ss_pred eEEEEEcCCC--CCeEEEEEcCCC-eEEEEECC--CcEEEEecCCCceEEEEcCCCCC-eEEEEEeCCCCEEEE-EeCCC
Q 004789 476 QTLATFANPP--PIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVS-SGADA 548 (730)
Q Consensus 476 ~~~~~~~~~~--~~v~~i~~spdg-~l~sgs~d--g~I~iwd~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s-~s~dg 548 (730)
+.+.++. |. .-...+.|++ + ++.+.+.+ +.|+.+|+.+++.+..+...... --.+++. +..|.. .-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 4556664 43 3456888886 6 55555554 48999999999999888643221 1234443 444444 45689
Q ss_pred cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeE
Q 004789 549 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT 624 (730)
Q Consensus 549 ~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~ 624 (730)
.+.+||..+.+.....+. +.. -..+ ++++..|+++ .++.|.++|..+.+.+.++....+. ..++
T Consensus 86 ~v~v~D~~tl~~~~ti~~-----~~~-----Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRY-----PGE-----GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEEEETTTTEEEEEEEC-----SSC-----CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCcCcEEEEEeC-----CCC-----ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 999999999654433222 211 1233 4667777775 5778999999999988887654322 3455
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCC----C-cccceeeEEEEEecCCCCEEEEEe
Q 004789 625 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG----T-ISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 625 ~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g----h-~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.+.+. +|+..+....+..|.+.|..+|+.+..+......+.. + .....+ ++||+|...++++||-
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlN--GIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLN--GIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEE--EEEEETTTTEEEEEET
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceE--EEEEcCCCCEEEEECC
Confidence 66665 6665544445789999999999999999866443221 1 122334 9999995455566664
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=5.9e-06 Score=81.47 Aligned_cols=183 Identities=12% Similarity=0.030 Sum_probs=124.4
Q ss_pred CeeEEEEe-CcEEEEee-CC--EEEEEEcCCceEEEEEcCCCCCe-EEEEEcCCC-eEEE-EECCCcEEEEecCCCceEE
Q 004789 448 SISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 448 ~V~~l~~s-~~~l~s~s-dg--~I~vwd~~t~~~~~~~~~~~~~v-~~i~~spdg-~l~s-gs~dg~I~iwd~~~~~~~~ 520 (730)
-...+.|+ +.++.+++ +| .|+++|+++++.+..+....... -.++. ++ .|+. ...++.+.+||..+.+.+.
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34788899 65555665 55 89999999999999887544322 23444 44 4444 4468899999999999999
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 599 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~ 599 (730)
++.... ....+++|+..|+.+..++.|.++|..+.+......+. ..++.. ..++.+.|. +|+..+.. .++.
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCCe
Confidence 987422 22334456777777666788999999986654433332 111110 234567776 67655445 6789
Q ss_pred EEEEeCCCCceeeeecCCC----------CCCCeEEEEEecCCCEEEEEEc
Q 004789 600 IDVYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~~----------h~~~v~~~~~spdg~~l~sgs~ 640 (730)
|.+.|.++++.+..+...+ .....+.++|+|+++.|++.+.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999988876421 1245689999998887777664
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=9.8e-05 Score=86.62 Aligned_cols=318 Identities=11% Similarity=0.023 Sum_probs=189.7
Q ss_pred CCCCeeEeecCCCcEEEEeecCCCCCcceeeeec------CCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcc
Q 004789 342 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 415 (730)
Q Consensus 342 pdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l------~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~ 415 (730)
++|. |-.|..++.|..++... ..+..+.. ........|.++...++|. |..|+.++-+..|+..+...
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~ 395 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAP----PTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA 395 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSC----CSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE
T ss_pred CCCC-EEEEecCCeEEEeCCCC----CcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE
Confidence 3454 34455567777777642 23333321 1111346799999999988 67777777788887654332
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEc--CCCCCeEEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYF 491 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~--~~~~~v~~i 491 (730)
..+... . ......|.++... ...|..|+ ++.+..+|..+++...... .....|.++
T Consensus 396 -----------~~~~~~-~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 396 -----------IYNKEN-R--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp -----------ECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred -----------EEccCC-C--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 001000 0 0245678899888 55566677 6889999988776543221 234678999
Q ss_pred EEcCCCeEEEEECCCcEEEEecCCCceEEEEcCC-----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceee
Q 004789 492 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 566 (730)
Q Consensus 492 ~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i 566 (730)
...++|.|..|+. +-|..||..+++........ ...|.++...++|+..+ |+.++-+..||..+++.. .+
T Consensus 456 ~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~---~~ 530 (781)
T 3v9f_A 456 YEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR---KF 530 (781)
T ss_dssp EECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE---EE
T ss_pred EECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE---Ec
Confidence 9888885555666 56899998877654333222 46799999998887655 555445788988764321 11
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
. ...+-. ...|.++...++|...+++.+|-+..||..+++. ..+... -....|.++...++|.+.+++ .+| |
T Consensus 531 ~-~~~~l~--~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l 604 (781)
T 3v9f_A 531 N-QYEGFC--SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-I 604 (781)
T ss_dssp C-TTTTCS--CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-E
T ss_pred c-CCCCCC--CCeeEEEEECCCCCEEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CCc-e
Confidence 1 111111 1578999999999877766655448999876653 333221 113467888888888765554 455 7
Q ss_pred EEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 645 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
..|+..+++.. .+.... |-.......-++...+ ++.++ .|+.+| +..+++..
T Consensus 605 ~~~~~~~~~~~-~~~~~d----Gl~~~~f~~~~~~~~~-~G~l~-~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 605 SCYITSKKCFY-TYDHSN----NIPQGSFISGCVTKDH-NGLIY-FGSING-LCFFNPDI 656 (781)
T ss_dssp EEEETTTTEEE-EECGGG----TCCSSCEEEEEEEECT-TSCEE-EEETTE-EEEECSCC
T ss_pred EEEECCCCceE-EecccC----CccccccccCceEECC-CCEEE-EECCCc-eEEEChhh
Confidence 78898876543 332211 2112222222555566 66544 455666 56667654
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=5.1e-06 Score=81.89 Aligned_cols=184 Identities=12% Similarity=0.110 Sum_probs=123.8
Q ss_pred CCeeEEEEe-CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCC-eEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEc
Q 004789 447 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPI-ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK 523 (730)
Q Consensus 447 ~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~-v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~ 523 (730)
.-...+.|+ +.++.+.+ +|.|+++|+++++.+..+ -.... --.+++..+........++.+.+||..+.+.+.++.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 345788999 55555556 789999999999988887 32221 123555433233344568899999999999999987
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEE
Q 004789 524 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV 602 (730)
Q Consensus 524 ~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~i 602 (730)
.. ..-..++ +|+..|+.+..++.|.++|..+.+......+. ..+.. ...++.+.|. +|+..+.. .++.|.+
T Consensus 134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~--~~g~~--v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK--LRGQP--VELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECE--ETTEE--CCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC--CCCcc--cccccccEEe-CCEEEEEECCCCeEEE
Confidence 42 2223444 56788887777899999999997654443332 11111 0245667777 77644445 6789999
Q ss_pred EeCCCCceeeeecCC-----------CCCCCeEEEEEecCCCEEEEEE
Q 004789 603 YEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 603 wd~~~~~~~~~~~~~-----------~h~~~v~~~~~spdg~~l~sgs 639 (730)
.|.++++.+..+... ......+.++++|+++.|++.+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999998877542 1134678999999776555544
No 259
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.61 E-value=3.3e-06 Score=92.80 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=149.5
Q ss_pred EEEee-CCEEEEEEcCCceEEEEEc---------------------C------------C------CCCeEEEEEcC---
Q 004789 459 LFSAS-GGKISIFSLETFQTLATFA---------------------N------------P------PPIATYFILLP--- 495 (730)
Q Consensus 459 l~s~s-dg~I~vwd~~t~~~~~~~~---------------------~------------~------~~~v~~i~~sp--- 495 (730)
|.||+ .|.++|+-+.+++.++.+. . + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 55666 8999999988888776552 0 0 11222345554
Q ss_pred --CC-eEEEEEC-CCcEEEEecCCCceEEEEcC-CCCCeEEEEE-e-CCCCEEEEEe------------------CCCcE
Q 004789 496 --QD-LFAFGFD-DSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSG------------------ADAQL 550 (730)
Q Consensus 496 --dg-~l~sgs~-dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~-s-pd~~~l~s~s------------------~dg~I 550 (730)
|| ++++... ++.|.+.|+.+.++...+.- ....+..+++ + |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 77 6665554 55799999999998885542 2345788888 5 9999998885 24578
Q ss_pred EEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe-c--------------------------------
Q 004789 551 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-E-------------------------------- 597 (730)
Q Consensus 551 ~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~-d-------------------------------- 597 (730)
.++|..+.+......+. +....++++|+|+++++++ +
T Consensus 178 tvID~~t~~v~~qI~Vg----------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVS----------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTTTEEEEEEEES----------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCCeEEEEEEeC----------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 99999985443322222 1234678999999998842 2
Q ss_pred ------CcEEEEeCCC--Cce-eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCce------------EE
Q 004789 598 ------GQIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE------------LR 655 (730)
Q Consensus 598 ------g~I~iwd~~~--~~~-~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~------------~~ 655 (730)
+.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ..
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 1367777776 444 344433 34567899999999888766 46899999999653 22
Q ss_pred EEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 656 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 656 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
..+.. | .+ +..++|+| +|...++.--|+.|.+|++.+
T Consensus 325 ~~v~v------G--~g---P~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 AEPEL------G--LG---PLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECCBC------C--SC---EEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred EEcCC------C--CC---cceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 22221 3 22 44899999 785566777899999999977
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.58 E-value=2.5e-05 Score=80.97 Aligned_cols=235 Identities=12% Similarity=0.012 Sum_probs=145.8
Q ss_pred CeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCC-------------------CCCeEEEEEcC-CCeEEEEEC
Q 004789 448 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-------------------PPIATYFILLP-QDLFAFGFD 504 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~-------------------~~~v~~i~~sp-dg~l~sgs~ 504 (730)
...+++|+ +++++++. ++.|..|+..++......... ......+++.+ +|.|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 34567787 66577777 899999998876543221100 13578899998 566666666
Q ss_pred CCcEEEEecCCCceEEEEcC-----CCCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEEcCCCcee
Q 004789 505 DSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKKL 561 (730)
Q Consensus 505 dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~sp-d~~~l~s~s~-----------------dg~I~vwd~~~~~~~ 561 (730)
.+.|..+|..++.. ..+.. .....+.+++.+ +|+..++... ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66688999776543 22211 123578899999 9987766432 367888888764321
Q ss_pred cceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEE
Q 004789 562 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYV 637 (730)
Q Consensus 562 ~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~s 637 (730)
. +. .+- .....++++|+|+.|+++ ..+.|..|++.... ....+.. ..+ ...+++.++|++.++
T Consensus 179 ~---~~---~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 179 L---LL---KEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp E---EE---EEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEE
T ss_pred E---ec---cCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEE
Confidence 1 11 110 235579999999977765 45789999986421 1122211 123 788999999987666
Q ss_pred EEc----------CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 638 SCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 638 gs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
... .+.|..+|.. ++.+..+... .|.....+. .+++ . ++.++++....+.|.++++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~----~g~~~~~~~--~~~~-~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP----PPFAGEHFE--QIQE-H-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC----TTTTTSCCC--EEEE-E-TTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECC----CCCccccce--EEEE-e-CCEEEEeecCCCceEEEecccc
Confidence 654 4678888874 6666665422 121112234 5555 3 5666666667889999998643
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=2.6e-05 Score=76.22 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=124.8
Q ss_pred CCCeeEEEEe-CcEEEEee-C--CEEEEEEcCCceEEEEEcCCCCCe-EEEEEcCCCeEEEEECCCcEEEEecCCCceEE
Q 004789 446 KDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 446 ~~~V~~l~~s-~~~l~s~s-d--g~I~vwd~~t~~~~~~~~~~~~~v-~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
..-...+.|+ +.++.+.+ + +.|+.+|+++++.+..+....... -.+++..+........++.+.+||..+.+.+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3446689999 55555555 4 499999999999999887544322 23444432244445578899999999999999
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 599 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~ 599 (730)
++.... .-..+ .+++..|+.+..++.|.++|..+.+......+. ..+.. ...++.+.+. +|+..+.. .++.
T Consensus 100 ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~--~~g~~--~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 100 RFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT--AGGRP--LDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECE--ETTEE--CCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc--cCCcc--cccceeeEEe-CCEEEEEECCCCe
Confidence 987432 22344 456777776677889999999986654433332 11111 0245566665 66655445 6789
Q ss_pred EEEEeCCCCceeeeecCCC-----------CCCCeEEEEEecCCCEEEEEEc
Q 004789 600 IDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~spdg~~l~sgs~ 640 (730)
|.+.|.++++.+..+...+ .....+.++++|+++.|++.+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999988776321 1346789999998776666553
No 262
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.49 E-value=0.00056 Score=70.97 Aligned_cols=276 Identities=10% Similarity=0.090 Sum_probs=153.3
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 459 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l 459 (730)
...+.+|.|.+++..++ ++.+|.|. ...+.++. |....... ......+.++.+. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~t-------------W~~~~~~~------~~~~~~~~~i~~~~~~~~ 93 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQT-------------WEPRTLVL------DHSDYRFNSVSFQGNEGW 93 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSS-------------CEECCCCC------SCCCCEEEEEEEETTEEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCC-------------CeECCCCC------CCCCccEEEEEecCCeEE
Confidence 45789999988888666 45666552 22222221 22111000 0124467888888 5555
Q ss_pred EEeeCCEEEEEEcCCceEEEEEc---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE-cCCCCCeEEEEE
Q 004789 460 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAY 534 (730)
Q Consensus 460 ~s~sdg~I~vwd~~t~~~~~~~~---~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~ 534 (730)
+++..+.|.. ....|+.-.... .+...+..+.+.+++ .++++ .++.|..- .+.|+.-... ......+..+++
T Consensus 94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 5554775544 223343322222 233457788887777 55544 45654332 2234333222 345567899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEc--CCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 004789 535 SLSLNVLVSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 612 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~--~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~ 612 (730)
.+++.+++++...+..+-+|- .+. ..+. .... ..+..+++.++++.++++.+|.+++.+...++.-.
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG~tW-----~~~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQTAW-----EPHN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTCSSC-----EEEE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred cCCCcEEEEECCCcEEEEeCCCCCce-----eECC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 999888776654433333443 222 1221 1122 46889999999988877888888877533244333
Q ss_pred eecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEE
Q 004789 613 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 690 (730)
Q Consensus 613 ~~~~~--~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las 690 (730)
.+... .....+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .+. ...++ ++.|.+ + ..++.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~----~~~-~~~~~--~v~~~~-~-~~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV----KKV-PSNFY--KILFFS-P-DQGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG----TTS-SSCCC--EEEEEE-T-TEEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc----CCC-CCCeE--EEEEEC-C-CceEE
Confidence 33211 123458899999888776665 47776 4555555433332210 011 22366 788865 3 45667
Q ss_pred EeCCCcEEEEeC
Q 004789 691 GLTNGRVHVIEP 702 (730)
Q Consensus 691 ~s~Dg~I~iWd~ 702 (730)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 778998776654
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=7e-05 Score=77.55 Aligned_cols=246 Identities=11% Similarity=-0.012 Sum_probs=146.6
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeE---e-----ecccCCCCCCeeEEEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM---T-----NDIAADPKDSISCFAL 454 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-----~~~~~~h~~~V~~l~~ 454 (730)
...+++|.++|+.++++..++.|..|+..++.. ..|........ . .... .....+.++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~p~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNKAFCENSTDAEKR-PLCGRTYDISY 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCHHHHTTCCCGGGH-HHHCCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccccccccccchhcc-ccCCCCceEEE
Confidence 345688999999788888889999888765433 11110000000 0 0000 01134678888
Q ss_pred e--CcEEEEee-CCEEEEEEcCCceEEEEE---cC-CCCCeEEEEEcC-CC-eEEEEEC-----------------CCcE
Q 004789 455 R--GSHLFSAS-GGKISIFSLETFQTLATF---AN-PPPIATYFILLP-QD-LFAFGFD-----------------DSSI 508 (730)
Q Consensus 455 s--~~~l~s~s-dg~I~vwd~~t~~~~~~~---~~-~~~~v~~i~~sp-dg-~l~sgs~-----------------dg~I 508 (730)
. +..|+.+. .+.|..+|..++...... .+ .......+++.+ +| ..++-.. ++.|
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 7 45566665 666888998766432211 11 123468899999 88 4443321 3678
Q ss_pred EEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEec
Q 004789 509 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 587 (730)
Q Consensus 509 ~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~sp 587 (730)
..||..+++...... .....+.++++|+++.|+.+ +..+.|.+|++..........+. . .. + ...+++.+
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~-~~---g-P~gi~~d~ 238 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV---K-IP---N-PGNIKRNA 238 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE---E-CS---S-EEEEEECT
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE---e-CC---C-CCCeEECC
Confidence 999987776433222 22345689999999866655 55689999998753211111111 1 11 3 66799999
Q ss_pred CCcEEEEE-e----------cCcEEEEeCCCCceeeeecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 588 DQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 588 dg~~l~~s-~----------dg~I~iwd~~~~~~~~~~~~~~h--~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
+|++.++. . .+.|..+|. .++.+..+..... ...+..+++ .++++.++...++.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 99877664 3 467889987 5777766654211 234666666 4666555655678888888754
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.00038 Score=72.94 Aligned_cols=234 Identities=13% Similarity=0.032 Sum_probs=146.3
Q ss_pred eeEEEEe-CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE-ECCCcEEEEecCCCceEEEEcCC
Q 004789 449 ISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAKLKGH 525 (730)
Q Consensus 449 V~~l~~s-~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg-s~dg~I~iwd~~~~~~~~~~~~h 525 (730)
..|.+.. ..+|+.+....|+..++........+. ....+..++|++.+ .|+.. ...+.|+.+++..+.....+...
T Consensus 36 ~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 36 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp SCEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred CcccccccCceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 3454444 456666666678888887655544443 33457799999766 55444 46678999998876544444433
Q ss_pred CCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ec-CcEE
Q 004789 526 QNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQID 601 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l-~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~d-g~I~ 601 (730)
......+++.+.+..| ++-...+.|.+.++..... .. +..... .....++++|.+..|+.+ .. +.|.
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~---l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KV---LLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECTTC---SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EE---EEeCCC---CCcceEEEecCcCeEEEeccCCCCEEE
Confidence 3456789999855555 4555568899999876321 11 111111 357899999976666664 33 7799
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 602 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
.+++. +.....+.. ........++++|++..|+.+. ..+.|..+++........+.. + .. .+.++++
T Consensus 186 r~~~d-G~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~------~--~~--~P~giav 253 (349)
T 3v64_C 186 ASSMD-GSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G--LP--HPFAITV 253 (349)
T ss_dssp EEETT-SCSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CS--SEEEEEE
T ss_pred EEeCC-CCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC------C--CC--CceEEEE
Confidence 99885 433333322 1255678999998777776654 457899999876543333321 1 11 2336666
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 681 HPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
. .+..+++-...+.|..++..+++
T Consensus 254 ~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 254 F--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEecCCCCeEEEEEccCCC
Confidence 3 45666676677888888865554
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.41 E-value=0.00033 Score=72.27 Aligned_cols=227 Identities=11% Similarity=-0.016 Sum_probs=141.3
Q ss_pred EEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE-ECCCcEEEEecCC----CceEEEEcCCCCCeEE
Q 004789 458 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCT----KKTKAKLKGHQNRITC 531 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg-s~dg~I~iwd~~~----~~~~~~~~~h~~~V~~ 531 (730)
+|+.+....|+..|+.+.+....+. .......++|++++ .|+.+ ..++.|..+++.. ......+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4566666778999998876655554 34557799999876 55444 4567999999876 2222233323345678
Q ss_pred EEEeCCCCEE-EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCC
Q 004789 532 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT 607 (730)
Q Consensus 532 l~~spd~~~l-~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~d-g~I~iwd~~~ 607 (730)
+++.+.+..| ++-...+.|.++|+..... ..+ ..... .....++++|.+..|+.+ .. +.|..+++.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~---~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTL---FRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE---EEE---EECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCce---EEE---EECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 9999755555 4545678999999876321 111 11111 357899999976666653 22 679988884
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 608 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 608 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
+.....+... .-.....+++++++..|+.+. ..+.|..+|+........... + ...-.+.++++. .+.
T Consensus 152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~------~--~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------E--KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC------T--TTTSSEEEEEEE--TTE
T ss_pred CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec------C--CccCCcEEEEEE--CCE
Confidence 4444444321 256688999999877776655 457899999975433222221 0 001123366664 356
Q ss_pred EEEEEeCCCcEEEEeCCCCc
Q 004789 687 RIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 687 ~las~s~Dg~I~iWd~~~~~ 706 (730)
++++....+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 67777777899999987664
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.0003 Score=74.92 Aligned_cols=232 Identities=13% Similarity=0.023 Sum_probs=146.0
Q ss_pred EEEEe-CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEecCCCceEEEEcCCCC
Q 004789 451 CFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 451 ~l~~s-~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~I~iwd~~~~~~~~~~~~h~~ 527 (730)
|.+.. ..+|+.+....|+.+++.......... .......++|++.+ .|+ +-...+.|+.+++..+.....+.....
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 44444 556666666778888887665544444 33457799999766 444 444667899999887654444443334
Q ss_pred CeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEE
Q 004789 528 RITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVY 603 (730)
Q Consensus 528 ~V~~l~~spd~~~l-~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~d-g~I~iw 603 (730)
....+++.+.+..| ++-...+.|.+.++..... .. +..... .....++++|.+..|+.+ .. +.|..+
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~---l~~~~l---~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KV---LLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EE---EECSSC---SCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EE---eecCCC---CCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 56788999865555 4445567888888876321 11 111111 357899999977777664 33 679999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEec
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 682 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 682 (730)
++. +.....+... .......++++|++..|+.+. ..+.|..+++........+.. + .. .+.++++.
T Consensus 231 ~~d-G~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------~--~~--~P~giav~- 297 (386)
T 3v65_B 231 SMD-GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G--LP--HPFAITVF- 297 (386)
T ss_dssp ETT-SCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS------S--CS--SEEEEEEE-
T ss_pred eCC-CCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC------C--CC--CceEEEEE-
Confidence 985 4333333221 245678999998777666554 457899999875443333321 1 11 23366663
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 683 LEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.+.++++....+.|..++..+++
T Consensus 298 -~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 298 -EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCC
T ss_pred -CCEEEEeeCCCCeEEEEECCCCc
Confidence 45677777778889998865654
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.33 E-value=0.0011 Score=69.54 Aligned_cols=201 Identities=8% Similarity=-0.032 Sum_probs=129.0
Q ss_pred CCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e-EEEEECCCcEEEEecCCCceEE
Q 004789 447 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~-l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
..+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++.+.+ . +++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 457789998 55665555 7899999998765444444333445688998765 4 4454556789999987554333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 596 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s-~d-g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~ 596 (730)
.+...-.....++++|.+..|+... .. +.|..+++..... .. +..... .....++++|++..|+.+ .
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~---~~~~~~---~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RI---IADTHL---FWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EE---SCCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---EE---EEECCC---CCcceEEEeCCCCEEEEEECC
Confidence 3433445688999999666655544 34 7788888876321 11 111111 357899999987777764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.+.|..+|+.. .....+... .......+++ .++.+.++-...+.|..++..+|+.+..+.
T Consensus 224 ~~~I~~~~~dG-~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDG-SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTS-CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCC-CceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 67899999864 333333221 2456678888 345555555567889888876776555554
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.0016 Score=67.13 Aligned_cols=203 Identities=8% Similarity=-0.063 Sum_probs=126.4
Q ss_pred CCCeeEEEEe--CcEEEEee--CCEEEEEEcCC----ceEEEEEcCCCCCeEEEEEcCCC-eE-EEEECCCcEEEEecCC
Q 004789 446 KDSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCT 515 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t----~~~~~~~~~~~~~v~~i~~spdg-~l-~sgs~dg~I~iwd~~~ 515 (730)
......++|+ ++.|+.+. ++.|..+++.+ ......+.........+++.+.+ .| ++-...+.|.++|+..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3456789998 55666555 68999999876 22222233233345688998755 44 4445678999999875
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 593 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d--g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~ 593 (730)
......+.........++++|.+..|+.+... +.|..+++..... ..+ ....- .....+++++++..|+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~---~~~~~---~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL---VTENI---QWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEE---ECSSC---SCEEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEE---EECCC---CCceEEEEeccCCEEE
Confidence 44333333344578899999976666655543 6888888875221 111 11111 3577999999887777
Q ss_pred EE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 594 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 594 ~s--~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.+ ..+.|..+|+.. ...+.+.. .........+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 180 ~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 74 557899999863 33333322 1123456788885 35555555567899999987776555553
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.32 E-value=0.00035 Score=71.66 Aligned_cols=223 Identities=12% Similarity=-0.034 Sum_probs=134.7
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 382 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 382 ~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
.....++|+++|+.+++-..++.|..||...... ..+. ......++++. |+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~--------------~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------IHAT--------------VEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------EEEE--------------CSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------EEEe--------------CCCCceeEEEcCCCcEE
Confidence 4577899999999655655778888887654221 1111 22457788888 6655
Q ss_pred EEee-C--CEEEEEEcCCceEEEEEcC-CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCce-EEEEc---------C
Q 004789 460 FSAS-G--GKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G 524 (730)
Q Consensus 460 ~s~s-d--g~I~vwd~~t~~~~~~~~~-~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~-~~~~~---------~ 524 (730)
++.. . ..|..+|..+++....... .......++..+++ .+++-..++.|+++|..+++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 5443 2 2577788888876443332 12233455555555 444444688999999876532 21111 1
Q ss_pred CCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC-CceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 004789 525 HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 601 (730)
Q Consensus 525 h~~~V~~l~~spd~~~l~s~-s~dg~I~vwd~~~-~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~ 601 (730)
.-...+.+ +++++.|+.+ +..+.|..||+.. +.......+. .. .....++++++|++.++. ..+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~-----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQ-----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---cc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11234555 7888766554 4568899999875 3211111111 11 134578999999876663 578899
Q ss_pred EEeCCCCceee--eecCCCCCCCeEEEEEe---cCCCEEEEEEcCC
Q 004789 602 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG 642 (730)
Q Consensus 602 iwd~~~~~~~~--~~~~~~h~~~v~~~~~s---pdg~~l~sgs~dg 642 (730)
++|.. ++... .+.. .....++++|. |+++.|++++..+
T Consensus 237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 99974 65532 2322 14668999998 8988887776543
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.00041 Score=71.20 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=133.7
Q ss_pred CCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-CC-cEEEEecCCCceEE
Q 004789 447 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS-SILVHCPCTKKTKA 520 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-dg-~I~iwd~~~~~~~~ 520 (730)
.....++|+ ++.+++.. ++.|..||.... ....+. .......+++.++| .+++... ++ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 456789998 66555554 799999998754 333333 23567899999999 5444433 22 47777877776543
Q ss_pred EEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc--ee-ecc-cccCCCCCCCCeEEEEEecCCcEEEEE
Q 004789 521 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI 595 (730)
Q Consensus 521 ~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~--~~-i~~-~~~~h~~~~~~v~~l~~spdg~~l~~s 595 (730)
.... .......++..+++..+++...++.|+++|..++..... .. +.. ...+.. .....+ +|+++.|+++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence 3221 223345566555555555555688999999876321100 00 000 001111 234455 8888888775
Q ss_pred --ecCcEEEEeCCC-Cce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcc
Q 004789 596 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 596 --~dg~I~iwd~~~-~~~--~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 670 (730)
..+.|..||+.. ++. ...+.. ......++++++|++.++....+.|.+++.. ++........ .+ .
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~----~~--~ 254 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----QG--V 254 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG----GT--C
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc----cc--c
Confidence 567899999864 321 112211 2345678999999887777677899999975 5543221110 01 1
Q ss_pred cceeeEEEEEe---cCCCCEEEEEeCC
Q 004789 671 LELYPLVIAAH---PLEPNRIALGLTN 694 (730)
Q Consensus 671 ~~v~~~~v~~s---p~~~~~las~s~D 694 (730)
.... +++|. | +++.|..++..
T Consensus 255 ~~p~--~~a~~g~~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGST--AVAFGQTEG-DCTAIYVVTNG 278 (306)
T ss_dssp TTEE--EEEECCSTT-TTTEEEEEECT
T ss_pred CCce--EEEEecccC-CCCEEEEECCC
Confidence 2234 89998 7 66666555443
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.00089 Score=71.20 Aligned_cols=201 Identities=8% Similarity=-0.037 Sum_probs=129.9
Q ss_pred CCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-e-EEEEECCCcEEEEecCCCceEE
Q 004789 447 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~-l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
..+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++.+.+ . +++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789998 55665555 6899999998765544444333345678888765 4 4454556789999987554333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 596 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~-d-g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~ 596 (730)
.+.........++++|.+..|+.+.. . +.|..+++..... ..+ ..... .....++++|++..|+.+ .
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~---~~~~~---~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RII---ADTHL---FWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE---ECSSC---SCEEEEEEEGGGTEEEEEETT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEE---EECCC---CCeeeEEEeCCCCEEEEEECC
Confidence 34434467889999997766665543 3 6788888876321 111 11111 356799999887777764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.+.|..+|+... ....+.... ......+++ ..+.++++....+.|..++..+|+.+..+.
T Consensus 267 ~~~I~~~d~dG~-~~~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGS-HRKAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSC-SCEEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCC-eeEEEEECC-CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 678999998643 333333222 456678888 445555565567889999977777666654
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.24 E-value=0.0017 Score=69.36 Aligned_cols=230 Identities=10% Similarity=-0.035 Sum_probs=145.2
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEE-ECCCcEEEEecCCC----ceEEEEcCCCCCe
Q 004789 456 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTK----KTKAKLKGHQNRI 529 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sg-s~dg~I~iwd~~~~----~~~~~~~~h~~~V 529 (730)
..+|+.+....|+..++........+. ....+..++|++.+ .|+.. ...+.|+.+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 446666667889999988765544443 44567799999876 55554 45678999998752 2333333344567
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe---cCcEEEEeC
Q 004789 530 TCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEA 605 (730)
Q Consensus 530 ~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~---dg~I~iwd~ 605 (730)
..+++.+.+. +.++-...+.|.+.++...... . +..... .....|++.|.+.+|+.+. .+.|...++
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~---~---l~~~~~---~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---T---LFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEE---E---EEECSS---CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceE---E---EEeCCC---CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 8999998544 4445556788999998863211 1 111111 3578999999766666642 467999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC
Q 004789 606 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 684 (730)
Q Consensus 606 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~ 684 (730)
. +.....+... .-.....+++++++..|+.+.. .+.|..+|++........... + ..-.+.+++.. .
T Consensus 233 d-G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~---~l~~P~gl~v~--~ 300 (400)
T 3p5b_L 233 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----K---RLAHPFSLAVF--E 300 (400)
T ss_dssp T-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS-----S---TTSSEEEEEEE--T
T ss_pred C-CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC-----C---CCCCCEEEEEe--C
Confidence 5 4333333221 2467889999988877776654 578999998765443333211 1 11123366663 3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCce
Q 004789 685 PNRIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 685 ~~~las~s~Dg~I~iWd~~~~~~ 707 (730)
+.++++....+.|..++..+++.
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEecCCCCeEEEEEcCCCCc
Confidence 56677777778899998766643
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.23 E-value=0.0039 Score=66.50 Aligned_cols=204 Identities=8% Similarity=-0.057 Sum_probs=129.8
Q ss_pred CCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCc----eEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecC
Q 004789 445 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 514 (730)
Q Consensus 445 h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~----~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~ 514 (730)
....+..++|+ ++.|+.+. .+.|+.+++... .....+.........+++.+.+ .+++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567889998 56666665 689999998752 2333333344567789999855 44454567789999988
Q ss_pred CCceEEEEcCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 515 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 515 ~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
.......+.........|+++|.+..|+.... .+.|...++..... ..+ ....- .....|++++++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~---~~~~l---~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL---VTENI---QWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEE---ECSSC---SCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEE---EECCC---CceEEEEEEeCCCEE
Confidence 66544444434456889999997666665543 37899999876321 111 11111 357899999988888
Q ss_pred EEE--ecCcEEEEeCCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 593 LSI--HEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 593 ~~s--~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
+.+ ..+.|..+|+... ....+. ..........+++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 775 5678999998643 333332 21223455677763 34444555566889999987877665554
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.22 E-value=0.0014 Score=64.86 Aligned_cols=215 Identities=11% Similarity=0.025 Sum_probs=131.4
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 004789 480 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 556 (730)
Q Consensus 480 ~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~ 556 (730)
.+.+-...+..++|+|++ ++++...++.|...|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 445556679999999987 55567788899999998 888887742 22467889999988776766567889999887
Q ss_pred CCceec-ceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeC-CCCceeeee-----cCCCCCCCeEEE
Q 004789 557 GWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA-PTLNHTSQL-----VPDKMDLPITYA 626 (730)
Q Consensus 557 ~~~~~~-~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg--~I~iwd~-~~~~~~~~~-----~~~~h~~~v~~~ 626 (730)
...... ..... +..+..+.......++++|++..|+++ ..+ .|+.|+- .....+... ....+...+.++
T Consensus 100 ~~~~i~~~~~~~-~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIK-IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEE-CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeec-cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 643211 11111 111100001457899999998777774 333 3555541 011112221 111124467899
Q ss_pred EEecCC-CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcc---cceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 627 TYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS---LELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 627 ~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~---~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
++.|.. ++++....+..|.++|.. |+.+..+.... |.+. .--.+=+|+|.+ +|+++++ ++.+.++++..
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~----g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTK----GSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECST----TGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCC----ccCCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 999854 555566667889999976 55666655431 2111 001133899999 7886666 66676666654
Q ss_pred C
Q 004789 703 L 703 (730)
Q Consensus 703 ~ 703 (730)
.
T Consensus 252 ~ 252 (255)
T 3qqz_A 252 Q 252 (255)
T ss_dssp -
T ss_pred c
Confidence 3
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.17 E-value=7.5e-05 Score=85.67 Aligned_cols=270 Identities=8% Similarity=0.000 Sum_probs=145.5
Q ss_pred CCCC-CCCeeEeecCCC-----------cEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeC-CCcE
Q 004789 339 TSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATH 405 (730)
Q Consensus 339 ~~sp-dg~~lat~~~dg-----------~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~-dg~I 405 (730)
...| +|+.++.|+.++ .+.+||.... ....+......+.....++++.++|+.+++|+. +..+
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~----~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG----IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC----CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC----cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 4566 899999987643 4778887532 221111000112333445788899998888885 4578
Q ss_pred EEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEee--C-----CEEEEEEcCCceE
Q 004789 406 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLETFQT 477 (730)
Q Consensus 406 ~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~s--d-----g~I~vwd~~t~~~ 477 (730)
.+||..+... ..... + ......-.++.+. |+.++.|+ + ..+.+||..+.+.
T Consensus 268 ~~yd~~t~~W--------------~~~~~------~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 268 SLYDSSSDSW--------------IPGPD------M-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEEGGGTEE--------------EECCC------C-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EEecCcCCce--------------eECCC------C-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 8888766542 21100 0 0111222234443 77777776 3 4799999988765
Q ss_pred EEEE-----cCCCCCeEEEEEcCCC-eEEEEECC---------CcEEEEecCCCceEEEEcCCC---------CCeEEEE
Q 004789 478 LATF-----ANPPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQ---------NRITCLA 533 (730)
Q Consensus 478 ~~~~-----~~~~~~v~~i~~spdg-~l~sgs~d---------g~I~iwd~~~~~~~~~~~~h~---------~~V~~l~ 533 (730)
...- ......- ...+..++ .++.|+.+ ..+..||..+..-......+. ..-.++.
T Consensus 327 ~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 4320 0000000 01222444 44555444 356788888765433322221 1234555
Q ss_pred EeC-CCCEEEEEeCCC-----------cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec---
Q 004789 534 YSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--- 597 (730)
Q Consensus 534 ~sp-d~~~l~s~s~dg-----------~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d--- 597 (730)
|.. +++.++.|+.++ .|.+||..+..-.... ...+... ..-.+++..|+++.++++ .+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBSBCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcccCc
Confidence 544 677788877532 5778887764321110 0011111 122355677899998884 32
Q ss_pred --------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 598 --------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 598 --------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
..+.+||..+.+....-.............+.|||+.++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4589999977654321111111222334556799999999985
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.16 E-value=0.00012 Score=83.98 Aligned_cols=276 Identities=11% Similarity=-0.005 Sum_probs=145.2
Q ss_pred EEEEec-CCCEEEEEeCCC-----------cEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEE
Q 004789 386 RLIYSH-SGDFLVALTQTA-----------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 453 (730)
Q Consensus 386 ~v~fsp-dg~~L~s~s~dg-----------~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~ 453 (730)
++++.+ +|+.++.|+.+. .+.+||..++.. .... .+ ...+.....+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--------------~~~~--~~----~~~~~~~~~~~~ 249 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--------------SDRT--VT----VTKHDMFCPGIS 249 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--------------CCCE--EE----ECSCCCSSCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--------------EeCc--cc----CCCCCCcccccc
Confidence 567777 888788877543 355666555432 1000 00 002333344556
Q ss_pred Ee--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCC-eEEEEEcCCC-eEEEEE-CC-----CcEEEEecCCCceEEE
Q 004789 454 LR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGF-DD-----SSILVHCPCTKKTKAK 521 (730)
Q Consensus 454 ~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~-v~~i~~spdg-~l~sgs-~d-----g~I~iwd~~~~~~~~~ 521 (730)
+. +..++.|+ ++.+.+||..+.+....-..+... -.+++..++| .++.|+ .+ ..+.+||..+++-..
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~- 328 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS- 328 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-
Confidence 55 78888888 468999999887654332222221 2345666788 777777 44 479999998765322
Q ss_pred EcC-----CCCCeEEEEEeCCCCEEEEEeCCC---------cEEEEEcCCCceecceeecccccCC--CCCCCCeEEEEE
Q 004789 522 LKG-----HQNRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIVNHIQF 585 (730)
Q Consensus 522 ~~~-----h~~~V~~l~~spd~~~l~s~s~dg---------~I~vwd~~~~~~~~~~~i~~~~~~h--~~~~~~v~~l~~ 585 (730)
+.. ....-....+..++...+.|+.+| .+..||..+..... .......++ .+....-.++.|
T Consensus 329 ~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBTCEEEEE
T ss_pred CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCCCceEec
Confidence 210 000000011223455555555443 46788887743211 111001100 000012345555
Q ss_pred ec-CCcEEEEE-ecC-----------cEEEEeCCCCceeeee-cCCCCCCCeEEEEEecCCCEEEEEEcC----------
Q 004789 586 HP-DQIHLLSI-HEG-----------QIDVYEAPTLNHTSQL-VPDKMDLPITYATYSCDGKCIYVSCKS---------- 641 (730)
Q Consensus 586 sp-dg~~l~~s-~dg-----------~I~iwd~~~~~~~~~~-~~~~h~~~v~~~~~spdg~~l~sgs~d---------- 641 (730)
.. +++.++.| .++ .|.+||..+....... ........-.+++..|+|++++.|+.+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 44 56666664 322 5888888776554332 011112223455667899999999865
Q ss_pred -CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC
Q 004789 642 -GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 693 (730)
Q Consensus 642 -g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~ 693 (730)
..+.+||..+.+-.. +........+| .+....| ++++++.||.
T Consensus 487 ~~~v~~ydp~t~~W~~-~~~~~~~R~~h-------s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYK-QNPNSIVRVYH-------SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEE-CCCCSSCCCTT-------EEEEECT-TSCEEEEECC
T ss_pred ccceEEEcCCCCceee-cCCCCCccccc-------cHhhcCC-CcEEEecCCC
Confidence 568999998765332 21111101111 1344567 8899999985
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.15 E-value=0.0015 Score=64.58 Aligned_cols=202 Identities=14% Similarity=0.080 Sum_probs=129.8
Q ss_pred CCCCCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcC-CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCCc
Q 004789 444 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 517 (730)
Q Consensus 444 ~h~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~-~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~ 517 (730)
+-...+..++|+ ++.|++.. ++.|...|.. ++.++.+.- .....-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 455679999999 55565544 7899999998 888888753 23567788999888 65665567789999876554
Q ss_pred e---EEEEc------CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCcee-cceeecc--cc-cCCCCCCCCeEEEE
Q 004789 518 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-CSKFLHS--FQ-TGLVPETTIVNHIQ 584 (730)
Q Consensus 518 ~---~~~~~------~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~-~~~~i~~--~~-~~h~~~~~~v~~l~ 584 (730)
. +.... ........++|+|+++.|+++.......+|.++.-... ....+.. .. ..+. ..+.+++
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~---~d~S~l~ 179 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL---DDVSGAE 179 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS---SCCCEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc---CCceeEE
Confidence 2 22222 12344589999999988887776655556555420000 0011100 00 0111 3578999
Q ss_pred EecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC--C-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 585 FHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 585 ~spdg~~l~~-s-~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
++|....+++ + ..+.+..+|.. ++.+..+.... + -...-.++|.++|+ |+..++.+.+++|....
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 9996555555 6 56779999974 66666554431 0 13668999999997 55557888888886543
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.11 E-value=0.001 Score=68.58 Aligned_cols=226 Identities=9% Similarity=-0.030 Sum_probs=137.6
Q ss_pred EEEEeeCCEEEEEEcCCce--EEEEEcCCCCCeEEEEEcCCC-eE-EEEECCCcEEEEecCCCceE-EEEcCCCCCeEEE
Q 004789 458 HLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 532 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~--~~~~~~~~~~~v~~i~~spdg-~l-~sgs~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l 532 (730)
+|+.+....|+.+++.... ....+. .......++|++.+ .| .+-...+.|..+++..+... ..+...-.....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4555556778888887653 111111 12245688999865 44 44455678999998766321 2222223456789
Q ss_pred EEeCCCCEE-EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe---cCcEEEEeCCCC
Q 004789 533 AYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTL 608 (730)
Q Consensus 533 ~~spd~~~l-~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~---dg~I~iwd~~~~ 608 (730)
++.+.+..| ++-...+.|.++++..... ..+ ..... .....+++.|.+..|+.+. .+.|..+++. +
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l---~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G 154 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVL---FWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-G 154 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC---EEE---ECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-S
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcE---EEE---EeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-C
Confidence 999755444 5555678899999876321 111 11111 3578999999766666542 4679999885 4
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 609 NHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 609 ~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
.....+... .-.....+++++++..|+.+. ..+.|+.++++......... +. .. .+.++++.. +..
T Consensus 155 ~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~-~~--~P~glav~~--~~l 221 (318)
T 3sov_A 155 SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------GS-LP--HPFALTLFE--DIL 221 (318)
T ss_dssp CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SC-CS--CEEEEEEET--TEE
T ss_pred CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------CC-CC--CceEEEEeC--CEE
Confidence 433333221 245678999999777776654 45889999987544332222 11 11 233666644 456
Q ss_pred EEEEeCCCcEEEEeCCCCce
Q 004789 688 IALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 688 las~s~Dg~I~iWd~~~~~~ 707 (730)
+.+-...+.|..++..+++.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTCCS
T ss_pred EEEecCCCeEEEEECCCCCc
Confidence 66766778999999877753
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.00032 Score=81.65 Aligned_cols=237 Identities=7% Similarity=0.006 Sum_probs=129.1
Q ss_pred cEEEEEEe-cCCCEEEEEeC-CC----cEEEeecCCC-ccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe
Q 004789 383 RVVRLIYS-HSGDFLVALTQ-TA----THKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 455 (730)
Q Consensus 383 ~V~~v~fs-pdg~~L~s~s~-dg----~I~iWd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s 455 (730)
.+...+|| |||++||.+.. +| .|+++|+.++ +.... .+ ......++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----------------~~--------~~~~~~~~Ws 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----------------KV--------SGTNGEIVWG 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----------------CE--------EEECSCCEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----------------cc--------cCceeeEEEe
Confidence 68889999 99998886654 23 4888888776 42000 00 0112357788
Q ss_pred --CcEEEEee-C-----CEEEEEEcCCceE--EEEEc-CCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEecCCCc-eE
Q 004789 456 --GSHLFSAS-G-----GKISIFSLETFQT--LATFA-NPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKK-TK 519 (730)
Q Consensus 456 --~~~l~s~s-d-----g~I~vwd~~t~~~--~~~~~-~~~~~v~~i~~spdg-~l~sgs~---dg~I~iwd~~~~~-~~ 519 (730)
|+.|+... + ..|+++++.++.. ...+. ........+.|+||| .|+..+. ...|+++|+.++. ..
T Consensus 230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 66766665 4 3688899887642 23333 233446788999999 6665542 3478899998762 22
Q ss_pred --EEE-cCCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCCCceeccee-ecccccCCCCCCCCeEEEEEecCCcE
Q 004789 520 --AKL-KGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 520 --~~~-~~h~~~V~~l~~spd~~~l~s~s~d----g~I~vwd~~~~~~~~~~~-i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
..+ ....+...++.|+.++.+++....+ ..|..+|+.+.. .... +- ..... ..+..+.+ .+..
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~--~~~~~li--~~~~~---~~l~~~~~--~~~~ 380 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS--DWSHVLV--DHSED---VFMESIAV--RSNY 380 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT--CCCCEEE--CCCSS---EEEEEEEE--CSSE
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc--cceeeEE--CCCCC---cEEEEEEE--ECCE
Confidence 333 3344555666665444444444443 256677776421 0111 11 11111 13444444 4556
Q ss_pred EEE-E-ecCc--EEEEeC-------CCCceeeeecCCCCCCCeEEEEE----ecCCC-EEEEEEcC---CeEEEEECCCc
Q 004789 592 LLS-I-HEGQ--IDVYEA-------PTLNHTSQLVPDKMDLPITYATY----SCDGK-CIYVSCKS---GHVKVFDTSTL 652 (730)
Q Consensus 592 l~~-s-~dg~--I~iwd~-------~~~~~~~~~~~~~h~~~v~~~~~----spdg~-~l~sgs~d---g~I~iwd~~~~ 652 (730)
|+. . .++. |+++|+ .+++....+.... ...+..+.+ ++++. ++++.+.. +.++.+|+.++
T Consensus 381 lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEE-PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp EEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCC-SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEEEEeCCEEEEEEEecccccccccCCccceEECCCC-ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 665 3 5664 667775 3443133332211 222334432 34554 44444433 57888898877
Q ss_pred eE
Q 004789 653 EL 654 (730)
Q Consensus 653 ~~ 654 (730)
+.
T Consensus 460 ~~ 461 (751)
T 2xe4_A 460 SR 461 (751)
T ss_dssp CE
T ss_pred cE
Confidence 64
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.08 E-value=0.0094 Score=61.58 Aligned_cols=270 Identities=8% Similarity=-0.024 Sum_probs=141.0
Q ss_pred CCCCCCCeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccc
Q 004789 339 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 418 (730)
Q Consensus 339 ~~spdg~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~ 418 (730)
.+.+++..+|+ +.+|.| +...+. ...-.............+.+|.|++ +. +++++.++.|.. ..+.++.
T Consensus 42 ~~~~~~~~~~~-G~~g~i-~~s~Dg---G~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~t--- 110 (327)
T 2xbg_A 42 SFIDRHHGWLV-GVNATL-METRDG---GQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQS--- 110 (327)
T ss_dssp EESSSSCEEEE-ETTTEE-EEESST---TSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSS---
T ss_pred EECCCCcEEEE-cCCCeE-EEeCCC---CCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCC---
Confidence 44556666664 455654 222221 1122222211111345789999986 44 444556664433 2222221
Q ss_pred cccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEeeCCEEEEEEcCCceEEEE-EcCCCCCeEEEEEcC
Q 004789 419 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLAT-FANPPPIATYFILLP 495 (730)
Q Consensus 419 ~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~~~~-~~~~~~~v~~i~~sp 495 (730)
|..... ...+...+..+.+. +..++++.+|.|.. ....|+.-.. .......+..+++.+
T Consensus 111 ----------W~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 111 ----------WSQIPL-------DPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp ----------CEECCC-------CTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred ----------ceECcc-------ccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC
Confidence 221100 00123446677776 55555554665432 1222332222 234556788999999
Q ss_pred CC-eEEEEECCCcEEE-Eec--CCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccc-
Q 004789 496 QD-LFAFGFDDSSILV-HCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ- 570 (730)
Q Consensus 496 dg-~l~sgs~dg~I~i-wd~--~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~- 570 (730)
++ .++++ .++.+.. +|- .+-+.+. ......+..+++.+++..++ ++.+|.+++.+...++. ...+. ..
T Consensus 173 ~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~-~~~ 245 (327)
T 2xbg_A 173 SGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELL-SPL 245 (327)
T ss_dssp TSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCB-CTT
T ss_pred CCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEecc-CCc
Confidence 88 66555 4555444 442 2222221 23456788999999887665 45678887765332211 11111 11
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~ 649 (730)
.... ..+.++++.+++..++++.++.| .+....++.-..+... .....+.++.|.+++. +++++.+|.|.-++-
T Consensus 246 ~~~~---~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 246 RRNS---VGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSCC---SCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ccCC---cceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 0111 35889999998888888888877 3444445443333311 1235678898876655 556667898776653
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.02 E-value=0.0002 Score=83.38 Aligned_cols=194 Identities=11% Similarity=0.044 Sum_probs=112.0
Q ss_pred CeEEEEEc-CCC-eEEEEE-CCC----cEEEEecCCC-ceEE-EEcCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEE
Q 004789 487 IATYFILL-PQD-LFAFGF-DDS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV 552 (730)
Q Consensus 487 ~v~~i~~s-pdg-~l~sgs-~dg----~I~iwd~~~~-~~~~-~~~~h~~~V~~l~~spd~~~l~s~s~d-----g~I~v 552 (730)
.+...+|| ||| +|+.+. .+| .|+++|+.++ +.+. .+. ....+++|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56789999 999 666443 333 4999999988 6321 111 113467899999988877665 25888
Q ss_pred EEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee---cCcEEEEeCCCCc-ee--eeecCCCCCCCeEE
Q 004789 553 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVYEAPTLN-HT--SQLVPDKMDLPITY 625 (730)
Q Consensus 553 wd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~---dg~I~iwd~~~~~-~~--~~~~~~~h~~~v~~ 625 (730)
+++.++.... ..+. ..... .....+.|+|||++|+. +. ...|+++|+.++. .. ..+.. .......+
T Consensus 252 ~~lgt~~~~~-~lv~--~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s 324 (751)
T 2xe4_A 252 HVMGKLQSED-VCLY--EEHNP---LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYD 324 (751)
T ss_dssp EETTSCGGGC-EEEE--ECCCT---TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEE
T ss_pred EECCCCchhc-EEEE--ecCCC---ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEE
Confidence 8887743111 1111 11111 34568899999999987 32 3458999997752 22 33332 22455566
Q ss_pred EEEecCCCEEEEEEcC----CeEEEEECCCc-eEEE-EeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEE
Q 004789 626 ATYSCDGKCIYVSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 699 (730)
Q Consensus 626 ~~~spdg~~l~sgs~d----g~I~iwd~~~~-~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~i 699 (730)
+.|+.++.+++....+ ..|+.+++.++ +... .+. + ...+....+++. .+.++++...||..++
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--------~-~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--------H-SEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--------C-CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--------C-CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 6655444444454443 36777887653 2222 222 1 111222255554 3456677778886544
Q ss_pred Ee
Q 004789 700 IE 701 (730)
Q Consensus 700 Wd 701 (730)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.01 E-value=0.0013 Score=71.04 Aligned_cols=246 Identities=11% Similarity=-0.037 Sum_probs=144.3
Q ss_pred CeeEEEEe-C---cEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC---C-cEEEEecCCCc
Q 004789 448 SISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTKK 517 (730)
Q Consensus 448 ~V~~l~~s-~---~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d---g-~I~iwd~~~~~ 517 (730)
....++|+ . ..|+.+. .+.|+.+|..++...... ........++++++| .+++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 35578887 3 5677666 589999999877765543 345567899999999 55554321 1 23334433221
Q ss_pred e-EEEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE
Q 004789 518 T-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 595 (730)
Q Consensus 518 ~-~~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s 595 (730)
. ...+. .......++++| +|.+.++-..++.|+.+|..++.... .+. ..+.. ..-..++|+|+|++|+++
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEEE
Confidence 1 01121 223456788999 67666665567889999998654211 111 11111 234579999999977764
Q ss_pred --ecCcEEEEeCC--CCce--eeeecCC-C------------CCCCeEEEEE---------ecCCCEEEEEEcCCeEEEE
Q 004789 596 --HEGQIDVYEAP--TLNH--TSQLVPD-K------------MDLPITYATY---------SCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 596 --~dg~I~iwd~~--~~~~--~~~~~~~-~------------h~~~v~~~~~---------spdg~~l~sgs~dg~I~iw 647 (730)
..+.|+.++.. ++.. ...+... + .-.....+++ .++|.+.++-..++.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998865 2321 1122110 0 1234667999 6777777776677899999
Q ss_pred ECCCceEEEEeecccccCCCCccc-------ceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 648 DTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 648 d~~~~~~~~~~~~~~~~~~gh~~~-------~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
+. +|..............|..++ --++..+++.|.++.++++-...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 564433321100000011111 11255899995367777777777889988874
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.003 Score=68.06 Aligned_cols=244 Identities=9% Similarity=-0.029 Sum_probs=140.8
Q ss_pred CeeEEEEe---CcEEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEecCCCc
Q 004789 448 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKK 517 (730)
Q Consensus 448 ~V~~l~~s---~~~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~dg-----~I~iwd~~~~~ 517 (730)
....++++ +..|+++. .+.|+.+|+.++...... ........++|+++| .|+++...+ .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 34567777 35666666 588999999876654444 345567899999999 677766521 34444433 32
Q ss_pred eE--EEEcCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 518 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 518 ~~--~~~~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
.. ..+.. ......++++| ++..+++-..++.|..+|..++... .+. ..+.. .....++|+|+|++|++
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~--~~~~~---~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLF--TIQDS---GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEE--ECSSS---SCCEEEEECTTSSEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE--EcCCC---CcceeEEEcCCCCEEEE
Confidence 21 22321 23467888999 6776666667789999999874321 111 11111 24678999999997776
Q ss_pred E--ecCcEEEEeCCC--Cce--eeeecCC----CC---------CCCeE-EEEEe--------cCCCEEEEEEcCCeEEE
Q 004789 595 I--HEGQIDVYEAPT--LNH--TSQLVPD----KM---------DLPIT-YATYS--------CDGKCIYVSCKSGHVKV 646 (730)
Q Consensus 595 s--~dg~I~iwd~~~--~~~--~~~~~~~----~h---------~~~v~-~~~~s--------pdg~~l~sgs~dg~I~i 646 (730)
+ ..+.|..++... +.. +..+... +. -.... .++.. ++|.+.++-..++.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899987642 221 1122110 00 11122 44443 34555556556788998
Q ss_pred EECCCceEEEEeecccccCCCCccc-------ceeeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 004789 647 FDTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 703 (730)
Q Consensus 647 wd~~~~~~~~~~~~~~~~~~gh~~~-------~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~ 703 (730)
++ .+|..............|..++ --++..+++.|.++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443332100000010011 11355899998445666666667788888764
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.0038 Score=64.12 Aligned_cols=192 Identities=11% Similarity=0.108 Sum_probs=122.6
Q ss_pred EEEEee-CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCC----C-e--EEE-EEC---CCcEEEEec--CCCceEEEEc
Q 004789 458 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ----D-L--FAF-GFD---DSSILVHCP--CTKKTKAKLK 523 (730)
Q Consensus 458 ~l~s~s-dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spd----g-~--l~s-gs~---dg~I~iwd~--~~~~~~~~~~ 523 (730)
+++... .+.+.+||+ +|+.++.+.. +.++.+..-|+ | . ++. ... +++|.+|++ .+++ +..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 333334 789999999 8999998864 55666665552 2 1 333 333 478999966 3443 55542
Q ss_pred C------CC-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEEcCC---CceecceeecccccCCCCCCCCeEEEEEecCC
Q 004789 524 G------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 589 (730)
Q Consensus 524 ~------h~-~~V~~l~~--spd-~~-~l~s~s~dg~I~vwd~~~---~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg 589 (730)
. .. ..+..+++ +|. +. ++++...+|.+..|++.. +. ...+.+.++..+ +.+..++..+..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg-----sq~EgcvvDd~~ 191 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN-----SQTEGMAADDEY 191 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS-----SCEEEEEEETTT
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC-----CCcceEEEcCCC
Confidence 1 11 45566777 664 43 677788899999998832 21 223344433333 468899999988
Q ss_pred cEEEEE-ecCcEEEEeCC-----CCceeeeecCCCCCCCeEEEEEe--cCCC-EEEEEE-cCCeEEEEECC-CceEEEEe
Q 004789 590 IHLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSC-KSGHVKVFDTS-TLELRCQI 658 (730)
Q Consensus 590 ~~l~~s-~dg~I~iwd~~-----~~~~~~~~~~~~h~~~v~~~~~s--pdg~-~l~sgs-~dg~I~iwd~~-~~~~~~~~ 658 (730)
..|+++ .+..|..||.+ +++.+..+....-...+..+++- ++++ +|++++ .++...+||.. +.+.+..+
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 888887 55557777754 34455444332224578888884 5555 666666 56899999997 67777766
Q ss_pred e
Q 004789 659 N 659 (730)
Q Consensus 659 ~ 659 (730)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 4
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.88 E-value=0.016 Score=67.16 Aligned_cols=202 Identities=8% Similarity=-0.079 Sum_probs=124.8
Q ss_pred CCCeeEEEEe--CcEEEEee--CCEEEEEEcCCc----eEEEEEcCCCCCeEEEEEcCCC-eEEE-EECCCcEEEEecCC
Q 004789 446 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCT 515 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~----~~~~~~~~~~~~v~~i~~spdg-~l~s-gs~dg~I~iwd~~~ 515 (730)
...+..++|+ +..|+.+. .+.|+.+++... .....+.........|++.+.+ .|+. -...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4567788898 55555555 689999998753 2233333344456689998877 5544 45567999999885
Q ss_pred CceEEEEcCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE
Q 004789 516 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 593 (730)
Q Consensus 516 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~ 593 (730)
......+.........|++.|.+..|+.+.. .+.|...++..... .. +..... .....|++++.+..|+
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---~~---lv~~~l---~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EE---EECSSC---SCEEEEEEETTTTEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce---EE---EEeCCC---CCceEEEEecCCCeEE
Confidence 5443334334456889999998666666543 26788899876321 11 111111 3678999998777777
Q ss_pred EE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEe
Q 004789 594 SI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 594 ~s--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~ 658 (730)
.+ ..+.|..+++........+...........+++. +..|+.+. ..+.|...+..+|+.+..+
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 64 5578999998543333223221123345566663 33555444 5588888888777655554
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.01 Score=68.81 Aligned_cols=229 Identities=10% Similarity=-0.042 Sum_probs=141.7
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEecCCC----ceEEEEcCCCCCe
Q 004789 456 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTK----KTKAKLKGHQNRI 529 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V 529 (730)
..+|+.+....|+..++........+. ....+..++|++.+ .|+ +-...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 345555566678888887655444443 44567799999865 444 4445678999998753 2233343344567
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e-cCcEEEEeC
Q 004789 530 TCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA 605 (730)
Q Consensus 530 ~~l~~spd~~~l~-s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~-dg~I~iwd~ 605 (730)
..|++.+.+..|+ +-...+.|.+.++..... .. +..... .....|++.|.+.+|+.+ . .+.|...++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~---~~---l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KT---LFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE---EE---EEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE---EE---EEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 7899998775555 445578899999986321 11 111111 357899999986666664 2 367999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCC
Q 004789 606 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 684 (730)
Q Consensus 606 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~ 684 (730)
. |.....+... .......|++++.+..|+.+.. .+.|..+++........+... ...-++++++...
T Consensus 545 d-G~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~-- 612 (791)
T 3m0c_C 545 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE-- 612 (791)
T ss_dssp T-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred C-CCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence 5 4444444322 2467899999987777776644 578999998765544443311 1111234666644
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc
Q 004789 685 PNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 685 ~~~las~s~Dg~I~iWd~~~~~ 706 (730)
+.++++-...+.|...+..+++
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEeCCCCc
Confidence 4556666667788888876664
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.83 E-value=0.0081 Score=61.78 Aligned_cols=200 Identities=8% Similarity=-0.059 Sum_probs=125.9
Q ss_pred CeeEEEEe--CcEEEEee--CCEEEEEEcCCceEE-EEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCCceEE
Q 004789 448 SISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~-~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~ 520 (730)
.+..++|+ ++.|+.+. .+.|..+++..+... ..+...-.....+++.+.+ .+++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 45578888 55555555 689999998766321 1222222345578888755 44444566789999987544333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 596 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~ 596 (730)
.+.........+++.|.+..|+.+.. .+.|...++..... ..+. ..+ - .....+++++++..|+.+ .
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~--~~~-l---~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FIII--NSE-I---YWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEEE--CSS-C---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEEE--ECC-C---CCccEEEEeccCCEEEEEECC
Confidence 33344566889999997666665553 57888888875221 1111 111 1 356799999987777764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
.+.|..+|+.. ...+.+.. ........+++.. +.++.+-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG-~~~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDG-TNRQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTS-CSCEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCC-CceEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 67899999853 33333332 2245667788753 3444555566899999998887655554
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.0069 Score=62.20 Aligned_cols=186 Identities=8% Similarity=0.041 Sum_probs=117.7
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCC----CC---EEE-EEeC--CCcEEEEEcC--CCceeccee
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LN---VLV-SSGA--DAQLCVWDAV--GWKKLCSKF 565 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd----~~---~l~-s~s~--dg~I~vwd~~--~~~~~~~~~ 565 (730)
.++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+ +++ +... +++|.+|++. ++.. ..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l---~~ 115 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL---QS 115 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE---EE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce---ee
Confidence 5666667789999999 7998888864 56787777663 22 223 3333 5789999774 3221 11
Q ss_pred eccc--c--cCCCCCCCCeEEEEE--ecC-Cc-EEEE-EecCcEEEEeCC-------CCceeeeecCCCCCCCeEEEEEe
Q 004789 566 LHSF--Q--TGLVPETTIVNHIQF--HPD-QI-HLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATYS 629 (730)
Q Consensus 566 i~~~--~--~~h~~~~~~v~~l~~--spd-g~-~l~~-s~dg~I~iwd~~-------~~~~~~~~~~~~h~~~v~~~~~s 629 (730)
+... . .+- ..+..+|+ +|. ++ ++++ ..+|.+..|++. +.+.++++.. ...+-.|...
T Consensus 116 i~~~~~pv~t~~----~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvD 188 (355)
T 3amr_A 116 MTDPDHPIATAI----NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAAD 188 (355)
T ss_dssp CSCTTSCEECCC----SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEE
T ss_pred ccccccCcCCCC----CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEc
Confidence 1100 1 110 24666777 674 54 4555 478999998882 3456777765 5678899999
Q ss_pred cCCCEEEEEEcCCeEEEEECC-----CceEEEEeecccccCCCCcccceeeEEEEEecCCCC-EEEEEe-CCCcEEEEeC
Q 004789 630 CDGKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEP 702 (730)
Q Consensus 630 pdg~~l~sgs~dg~I~iwd~~-----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~-~las~s-~Dg~I~iWd~ 702 (730)
+....|+.+-++.-|..++.. +++.+..+.. ++-...+..+.+...+ +++ +|++++ .+++..+|+.
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEES
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEEC
Confidence 989999999999777777755 3445544421 3323346633333355 445 555555 6789999999
Q ss_pred C
Q 004789 703 L 703 (730)
Q Consensus 703 ~ 703 (730)
.
T Consensus 262 ~ 262 (355)
T 3amr_A 262 Q 262 (355)
T ss_dssp S
T ss_pred C
Confidence 7
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.74 E-value=0.029 Score=63.39 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=144.2
Q ss_pred cEEEEeeCCEEEEEEcCCceEEEEEcC-CCCCeEEEEEcCCC-eEE-EEECCCcEEEEecCCCceEEEEcCCCCCeEEEE
Q 004789 457 SHLFSASGGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 533 (730)
Q Consensus 457 ~~l~s~sdg~I~vwd~~t~~~~~~~~~-~~~~v~~i~~spdg-~l~-sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 533 (730)
.+|+.+..+.|+..++.+......+.. .-..+..++|++.+ .|+ +-..++.|+.+++........+.........++
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 356666678899999987654443332 23467799999977 554 445678999999876544444443334677899
Q ss_pred EeCCCCEEE-EEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe---cCcEEEEeCCCCc
Q 004789 534 YSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLN 609 (730)
Q Consensus 534 ~spd~~~l~-s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~---dg~I~iwd~~~~~ 609 (730)
+.+.+..|+ +-...+.|.+.++..... ..+ ....- .....+++.|....|+.+. .+.|...++.. .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~---~~l---~~~~l---~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-~ 156 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHR---QVL---VWKDL---DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-S 156 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTC---EEE---ECSSC---CCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcE---EEE---EeCCC---CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-C
Confidence 998665554 444567899999876321 111 11111 3578999999655666542 56788888854 3
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 688 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~l 688 (730)
....+.. .......+++++++..|+.+.. .+.|..+++..... ..+.. + .. .+.++++.. +..+
T Consensus 157 ~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~------~--l~--~P~glav~~--~~ly 221 (628)
T 4a0p_A 157 ERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD------D--LP--HPFGLTQYQ--DYIY 221 (628)
T ss_dssp SCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE------C--CS--CEEEEEEET--TEEE
T ss_pred ceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec------c--CC--CceEEEEEC--CEEE
Confidence 3333332 2567889999998777776654 57899999876544 23321 1 11 133677654 4566
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 004789 689 ALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 689 as~s~Dg~I~iWd~~~~~ 706 (730)
++-...+.|...|..+++
T Consensus 222 ~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EecCCCCEEEEEECCCCC
Confidence 666667889999877765
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.71 E-value=0.0071 Score=65.19 Aligned_cols=242 Identities=10% Similarity=-0.000 Sum_probs=130.0
Q ss_pred CcEEEEEEecC--CCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--Cc
Q 004789 382 GRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 457 (730)
Q Consensus 382 ~~V~~v~fspd--g~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~ 457 (730)
.....++|+|+ +..|+.+...+.|+.++..++.. .... .......+++++ |+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v---------------------~~~~---~~~~~P~giavd~dG~ 194 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV---------------------DIKT---TNIGQCADVNFTLNGD 194 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE---------------------EEEC---CCCSCEEEEEECTTCC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE---------------------EEee---cCCCCccEEEECCCCC
Confidence 34568899984 34456555446777776544432 2211 133457889999 66
Q ss_pred EEEEeeCC-----EEEEEEcCCceE-EEEEcCCCCCeEEEEEcC-CCeEE-EEECCCcEEEEecCCCceEEEE-cC-CCC
Q 004789 458 HLFSASGG-----KISIFSLETFQT-LATFANPPPIATYFILLP-QDLFA-FGFDDSSILVHCPCTKKTKAKL-KG-HQN 527 (730)
Q Consensus 458 ~l~s~sdg-----~I~vwd~~t~~~-~~~~~~~~~~v~~i~~sp-dg~l~-sgs~dg~I~iwd~~~~~~~~~~-~~-h~~ 527 (730)
++++...+ .+...+...+.. ...+. .......++++| +|.|+ +-..++.|+.+|..++.....+ .. ...
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 44443322 233333322111 01111 123345688999 55444 4445678999999877663333 21 222
Q ss_pred CeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC--Cceecceeeccc--ccCCC------CCCCCeEEEEE---------ec
Q 004789 528 RITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSF--QTGLV------PETTIVNHIQF---------HP 587 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~-s~dg~I~vwd~~~--~~~~~~~~i~~~--~~~h~------~~~~~v~~l~~---------sp 587 (730)
.-..++|+|++++|+.+ ...+.|+.++... +.......+... ..+.. ........+++ .+
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 33579999999955544 4567899988763 211000011000 00000 00023567899 66
Q ss_pred CCcEEEE-EecCcEEEEeCCCCceeeeecCCCC----------------CCCeEEEEEe-cCCCEEEEEEcCCeEEEEEC
Q 004789 588 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------------DLPITYATYS-CDGKCIYVSCKSGHVKVFDT 649 (730)
Q Consensus 588 dg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h----------------~~~v~~~~~s-pdg~~l~sgs~dg~I~iwd~ 649 (730)
+|.+.++ ...+.|+.++. ++... ++.+.+. -.....++++ ++|.++++-..++.|+.+++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 6666655 36678999985 56433 3332110 1236778888 56665555555677777765
Q ss_pred C
Q 004789 650 S 650 (730)
Q Consensus 650 ~ 650 (730)
+
T Consensus 432 e 432 (433)
T 4hw6_A 432 E 432 (433)
T ss_dssp C
T ss_pred C
Confidence 3
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.0075 Score=64.95 Aligned_cols=241 Identities=7% Similarity=-0.043 Sum_probs=129.9
Q ss_pred cEEEEEEec-CCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEE
Q 004789 383 RVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 459 (730)
Q Consensus 383 ~V~~v~fsp-dg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l 459 (730)
....++++| ++..|+++...+.|+.+|...+.. .... ........++++ |++|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v---------------------~~~~---~~~~~P~~ia~d~~G~~l 193 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV---------------------STVY---SGLSKVRTICWTHEADSM 193 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE---------------------EEEE---CCCSCEEEEEECTTSSEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE---------------------EEEe---cCCCCcceEEEeCCCCEE
Confidence 456789998 455566666656677766654332 1111 133557789998 7755
Q ss_pred EEee--CC----EEEEEEcCCceEE--EEEcCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEecCCCceEEEEcC-CCCC
Q 004789 460 FSAS--GG----KISIFSLETFQTL--ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNR 528 (730)
Q Consensus 460 ~s~s--dg----~I~vwd~~t~~~~--~~~~~~~~~v~~i~~sp-dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~ 528 (730)
+.+. ++ .+..++.. +... ..+.. ......++++| +| .+++-..++.|..++..++........ ....
T Consensus 194 yvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 194 IITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp EEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred EEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 5554 22 34444432 3211 22221 22345788999 55 555555677999999887654222221 2245
Q ss_pred eEEEEEeCCCCEEEE-EeCCCcEEEEEcCCC--ceecceeeccc--ccCCCC------CCCCeE-EEEEe--------cC
Q 004789 529 ITCLAYSLSLNVLVS-SGADAQLCVWDAVGW--KKLCSKFLHSF--QTGLVP------ETTIVN-HIQFH--------PD 588 (730)
Q Consensus 529 V~~l~~spd~~~l~s-~s~dg~I~vwd~~~~--~~~~~~~i~~~--~~~h~~------~~~~v~-~l~~s--------pd 588 (730)
...++|+|+|++|+. -...+.|..++.... .......+... ..+... ...... .++.. ++
T Consensus 272 P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~ 351 (430)
T 3tc9_A 272 EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDE 351 (430)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCC
T ss_pred ceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCC
Confidence 778999999995554 456788999877641 11000011100 000000 001223 45553 33
Q ss_pred CcEEEE-EecCcEEEEeCCCCceeeeecCC-----C----------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC
Q 004789 589 QIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----K----------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTS 650 (730)
Q Consensus 589 g~~l~~-s~dg~I~iwd~~~~~~~~~~~~~-----~----------h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~~ 650 (730)
|...++ ...+.|+.++. ++......-.. + .-.....++++|+ |.++++-..+..|+.++++
T Consensus 352 g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 352 YDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 554445 35678999984 56543322110 0 0125788999984 5555555556778777653
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.00029 Score=81.09 Aligned_cols=202 Identities=8% Similarity=-0.048 Sum_probs=119.4
Q ss_pred CCeeEEEEe--CcEEEEee--CCEEEEEEcCC----ceEEEEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecCCC
Q 004789 447 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 516 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t----~~~~~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~~~ 516 (730)
..+..++|+ +..|+.+. .+.|+.+++.+ ......+.........+++.+.+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678888 56666665 68999999875 22222221112234467887655 4444455678999998755
Q ss_pred ceEEEEcCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE
Q 004789 517 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 594 (730)
Q Consensus 517 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~ 594 (730)
.....+.........++++|.+.+|+.+.. .+.|.++++..... ..+. .... .....|+|+|++..|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l~---~~~l---~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV---TENI---QWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEES---CSSC---SSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEEE---eCCC---CCccEEEEeccCCEEEE
Confidence 443333333345678899997655555443 26788888765211 1111 1111 34568999998776666
Q ss_pred E--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEee
Q 004789 595 I--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 595 s--~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 659 (730)
+ ..+.|..+|+.. ...+.+.. .........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 557 aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4 567899999864 33333322 111233445666543 344455556899999998888777664
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.63 E-value=0.11 Score=62.74 Aligned_cols=328 Identities=9% Similarity=-0.012 Sum_probs=175.4
Q ss_pred CCeeEeecC-CCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEe--cCCCEEEEEeCCCcEEEeecCC--Cccccc
Q 004789 344 ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLWKWQS--NKQSLE 418 (730)
Q Consensus 344 g~~lat~~~-dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fs--pdg~~L~s~s~dg~I~iWd~~~--~~~~~~ 418 (730)
++++|.|.. |++|+|++++. -.......+.. .....++.+. ....+|..|-.||.+.-+.+.. +.....
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~ 644 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 644 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred ccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence 579999997 99999999973 22222222321 2233444433 2345889999999886665543 222111
Q ss_pred ----cccccceeeEecCC------------------CCeeEeecccCCCCCCe-eEEEEe----CcEEEEeeCCEEEEEE
Q 004789 419 ----EENVNMESQLYQPS------------------SKLVMTNDIAADPKDSI-SCFALR----GSHLFSASGGKISIFS 471 (730)
Q Consensus 419 ----~~~~~~~~~i~~~~------------------~~~~~~~~~~~~h~~~V-~~l~~s----~~~l~s~sdg~I~vwd 471 (730)
..+.+.....+... .+.+.-..+ ....+ ....|+ .+-++..+++.++|..
T Consensus 645 r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~ 721 (1158)
T 3ei3_A 645 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIGT 721 (1158)
T ss_dssp EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEEE
T ss_pred eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEEE
Confidence 00001000101111 111111000 11122 233344 3345555556688877
Q ss_pred cCCce--EEEEEcCCCCCeEEEEEcCCC-eEEEEEC--------------------------------------------
Q 004789 472 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFD-------------------------------------------- 504 (730)
Q Consensus 472 ~~t~~--~~~~~~~~~~~v~~i~~spdg-~l~sgs~-------------------------------------------- 504 (730)
+.+.. .++++. -...+..++++|+. .++++..
T Consensus 722 i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 722 IDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp ECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred ecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 65432 223332 23466778888776 3333221
Q ss_pred -----CCcEEEEecCCCceEEEEcC-CCCCeEEEEE---eCC-CCEEEEEe----------CCCcEEEEEcCCCceecce
Q 004789 505 -----DSSILVHCPCTKKTKAKLKG-HQNRITCLAY---SLS-LNVLVSSG----------ADAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 505 -----dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~---spd-~~~l~s~s----------~dg~I~vwd~~~~~~~~~~ 564 (730)
-+.|++.|..+.+.+..+.- ....+.+++. ..+ ..++++|+ ..|.|.+|++..++. +
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL---~ 877 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL---Q 877 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE---E
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE---E
Confidence 12477788777777666543 2334555543 222 46888876 347899999874322 2
Q ss_pred eecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 004789 565 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 644 (730)
Q Consensus 565 ~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I 644 (730)
.+.... .. +.|++++-- +| +|+++....|++|++...+.++ ..... -..+..+.....|.++++|..-..|
T Consensus 878 lv~~~~--v~---g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~~i~~~~l~~~~~~I~vgD~~~Sv 948 (1158)
T 3ei3_A 878 TVAEKE--VK---GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH-YNNIMALYLKTKGDFILVGDLMRSV 948 (1158)
T ss_dssp EEEEEE--ES---SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE-CCCSCEEEEEEETTEEEEEESSBCE
T ss_pred EEEEEE--cC---CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec-cccEEEEEEeccCCEEEEEEhhheE
Confidence 222111 11 678887754 34 6777778899999997665443 21111 1113333333457789988877666
Q ss_pred EEE--ECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 645 KVF--DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 645 ~iw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.++ +...+++...-. . ..+.+.+++.+-. ...++.+..+|.|.+.....
T Consensus 949 ~~~~y~~~~~~L~~~a~-------D--~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 949 LLLAYKPMEGNFEEIAR-------D--FNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEETTTTEEEEEEE-------C--CSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred EEEEEEcCCCeEEEEEe-------e--cccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 664 554554433322 1 2233444777765 35788899999999998765
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.027 Score=61.06 Aligned_cols=253 Identities=9% Similarity=-0.075 Sum_probs=146.0
Q ss_pred CeeEEEEe---CcEEEEee--CCEEEEEEcCCceEEEEEcCC---CCCeEEEEE-------cCCC-eEEEEECCC-----
Q 004789 448 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS----- 506 (730)
Q Consensus 448 ~V~~l~~s---~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~---~~~v~~i~~-------spdg-~l~sgs~dg----- 506 (730)
....|+|+ +..|+.+. .+.|++.|.+++......... ......++| +++| .|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 35577887 24455555 468999999987776655432 235789999 9999 677776554
Q ss_pred --cEEEEecCC-CceE-----EEEcCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcC-------CCcee-----c---
Q 004789 507 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAV-------GWKKL-----C--- 562 (730)
Q Consensus 507 --~I~iwd~~~-~~~~-----~~~~~h~~~V~~l~~spd-~~~l~s~s~dg~I~vwd~~-------~~~~~-----~--- 562 (730)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++... .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 2221 222211 23457788994 5555566677889999997 44320 0
Q ss_pred -ceeecccccCCCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCcee--eeecCC----CC---------CCC
Q 004789 563 -SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT--SQLVPD----KM---------DLP 622 (730)
Q Consensus 563 -~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~--~~~~~--~~~~~~----~h---------~~~ 622 (730)
...+... +.. .....++|+|+|+.|+++ ..+.|+.++.. .+... ..+.+. +. -..
T Consensus 299 ~~~~l~~~--~~~---~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 299 TFKQLFTI--ADP---SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TEEEEEEC--SSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred ccceeEec--CCC---CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 0011111 111 356799999999976664 56778886643 33210 122111 00 112
Q ss_pred eE-EEEEe-------cCCCEEEEEEcCCeEEEEECCCceEEEEeecccc-------cCCCCccc-------ceeeEEEEE
Q 004789 623 IT-YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY-------AQPGTISL-------ELYPLVIAA 680 (730)
Q Consensus 623 v~-~~~~s-------pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-------~~~gh~~~-------~v~~~~v~~ 680 (730)
.. .++.. ++|.+.++-..+..|+.++ .+|. +.++..... ...|..++ --.+..+++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 34 44554 4566666767778999998 4564 334432100 00011111 112558999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004789 681 HPLEPNRIALGLTNGRVHVIEPLESEVE 708 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd~~~~~~~ 708 (730)
.+.++.++++=+....||.+++......
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 9833667777777889999999876553
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.58 E-value=0.076 Score=53.54 Aligned_cols=260 Identities=10% Similarity=0.034 Sum_probs=154.1
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCC
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 433 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~ 433 (730)
..|.|-|+..... ..+-.. .-.+.-.+|..+.+|.=. ..++.|+|+++......
T Consensus 49 ~~VvIiDl~n~~~---~~Rrpi-------~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks--------------- 102 (365)
T 2xzh_A 49 AQVVIIDMNDPSN---PIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------------- 102 (365)
T ss_dssp EEEEEEETTSTTS---CEEEEC-------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE---------------
T ss_pred CEEEEEECCCCCC---cccccc-------ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcc---------------
Confidence 4677778875332 222111 112355688888666554 67899998877654111
Q ss_pred CeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCEEEEEEcCC-ceEEEEEcCC----CCCeEEEEEcCCC--eEEEEE--
Q 004789 434 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD--LFAFGF-- 503 (730)
Q Consensus 434 ~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~I~vwd~~t-~~~~~~~~~~----~~~v~~i~~spdg--~l~sgs-- 503 (730)
. .....|.-=.|- .+.|+-.++..|+-|++.. ..+.+.+..| ...|.....+++. .+++|-
T Consensus 103 ------~---~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 103 ------H---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp ------E---ECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred ------e---ecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec
Confidence 1 123455555555 8899999999999999974 4566677655 3467777788888 444443
Q ss_pred ----CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeC--CC-CEEEEEeC---CCcEEEEEcCCC---ceec-ceeecc-
Q 004789 504 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--SL-NVLVSSGA---DAQLCVWDAVGW---KKLC-SKFLHS- 568 (730)
Q Consensus 504 ----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp--d~-~~l~s~s~---dg~I~vwd~~~~---~~~~-~~~i~~- 568 (730)
-.|.+.+|..+. +.-+.++||.+.-..+...- .. ..+..+.. .+.+++.++... ...- .+.+.-
T Consensus 174 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~ 252 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 252 (365)
T ss_dssp ETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEEC
T ss_pred cCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceee
Confidence 236788999764 45577788855433322211 11 12333322 258899998542 1100 011110
Q ss_pred cccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 004789 569 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 647 (730)
Q Consensus 569 ~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iw 647 (730)
++.... .+..-++..++.-..++. ..-|.|++||+.++.++..-+.. ...|...+.+.+..=+++....|.|.--
T Consensus 253 fppea~--~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 253 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp CCTTCT--TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred CCcccc--CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 111111 145567888887666666 78899999999999998776643 5556555554443445555577777666
Q ss_pred ECCCce
Q 004789 648 DTSTLE 653 (730)
Q Consensus 648 d~~~~~ 653 (730)
.++...
T Consensus 329 ~v~~~~ 334 (365)
T 2xzh_A 329 CVEEEN 334 (365)
T ss_dssp EECTTT
T ss_pred EECccc
Confidence 665544
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.53 E-value=0.2 Score=56.37 Aligned_cols=328 Identities=10% Similarity=-0.023 Sum_probs=170.6
Q ss_pred cCCCCCCCeeE-eecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEe-CCCcEEEeecCCCcc
Q 004789 338 STSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQ 415 (730)
Q Consensus 338 ~~~spdg~~la-t~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s-~dg~I~iWd~~~~~~ 415 (730)
..+.+.+..|. +-...+.|..++.++.. ....+.. . --.....+++.+.+..|+.+. ..+.|.+.+.+....
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~---~~~~v~~-~--~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTE---SVQNVVV-S--GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-S--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCC---ceEEEEe-C--CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34555544444 44456778888876421 1111111 0 225788999999666566554 468888888765432
Q ss_pred ccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee---CCEEEEEEcCCceEEEEEcCCCCCeEE
Q 004789 416 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATY 490 (730)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s---dg~I~vwd~~t~~~~~~~~~~~~~v~~ 490 (730)
. . +.. ..-.....+++. +.+|+.+. .+.|...++............-...+.
T Consensus 119 ~-----------~-------l~~-----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 119 K-----------V-------LFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp E-----------E-------EEC-----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred E-----------E-------EEe-----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 0 0 000 122345577886 45555444 367777777643333333334456789
Q ss_pred EEEcCCC-eEEEEE-CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc-----
Q 004789 491 FILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----- 563 (730)
Q Consensus 491 i~~spdg-~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~----- 563 (730)
+++++++ .|+.+. ..+.|...|+..........+.......+++..+ ...++-...+.|...|..+++....
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~ 254 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDI 254 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCC
Confidence 9999977 555554 4568999998754332222222223346677655 3344444567888888876542110
Q ss_pred -e--eec---c--cccCCCC---CCCCeEEEEE-----------ecCC---------------cEEEEEecCcEEEEeCC
Q 004789 564 -K--FLH---S--FQTGLVP---ETTIVNHIQF-----------HPDQ---------------IHLLSIHEGQIDVYEAP 606 (730)
Q Consensus 564 -~--~i~---~--~~~~h~~---~~~~v~~l~~-----------spdg---------------~~l~~s~dg~I~iwd~~ 606 (730)
. .+. . .+.+..+ ..+....+++ .|.| .+|+.+..+.|+..++.
T Consensus 255 ~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~ 334 (619)
T 3s94_A 255 FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLD 334 (619)
T ss_dssp CCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESS
T ss_pred CCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecC
Confidence 0 000 0 0000000 0001111111 1211 24555666778888876
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 607 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
..........-..-..+..++|.+.+..|+.+. ..+.|+.+++........+.. + -.... ++++.+..+
T Consensus 335 ~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~~~p~--GlAvD~~~~ 404 (619)
T 3s94_A 335 TPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--IAHPD--GIAVDWVAR 404 (619)
T ss_dssp STTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CSCCC--EEEEETTTT
T ss_pred CCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--CCCcC--ceEEecccC
Confidence 543221111111245678899998655565544 568899999876543333321 1 12234 667765345
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004789 686 NRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~ 705 (730)
+++++-+..+.|.+.++...
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred cEEEEeCCCCcEEEEeCCCC
Confidence 56666666778888887644
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.48 E-value=0.025 Score=63.87 Aligned_cols=227 Identities=9% Similarity=-0.012 Sum_probs=132.4
Q ss_pred EEEEeeCCEEEEEEcCCce-EEEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEecCCCce-EEEEcCCCCCeEEEE
Q 004789 458 HLFSASGGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT-KAKLKGHQNRITCLA 533 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~-~~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~ 533 (730)
+|+-+....|+..++.... ..............++|++.+ .|+.+. ..+.|..+++..... ...+...-.....++
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 90 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEE
Confidence 4455556778888887543 222222234456799999877 555554 457899999875532 233333335788999
Q ss_pred EeCCCCEEE-EEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCc
Q 004789 534 YSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLN 609 (730)
Q Consensus 534 ~spd~~~l~-s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s---~dg~I~iwd~~~~~ 609 (730)
+.+.+..|+ +-...+.|.+.++..... ..+ ....- .....|++.|.+.+|+.+ ..+.|...++. |.
T Consensus 91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~---~~l---~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~ 160 (619)
T 3s94_A 91 CDWLGEKLYWTDSETNRIEVSNLDGSLR---KVL---FWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GS 160 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC---EEE---ECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred EEecCCEEEEEeCCCCEEEEEECCCCCE---EEE---EeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECC-CC
Confidence 999665555 445678999999987321 111 11111 356789999976666554 24678888874 44
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEE
Q 004789 610 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 688 (730)
Q Consensus 610 ~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~l 688 (730)
....+... .......+++++++..|+.+. ..+.|..+++.......... +. . -.+.++++.. + ..+
T Consensus 161 ~~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-------~~-~--~~P~gi~~~~-~-~ly 227 (619)
T 3s94_A 161 SRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------GS-L--PHPFALTLFE-D-ILY 227 (619)
T ss_dssp SCEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESS-S-EEE
T ss_pred ceEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-------CC-C--CCceEEEEeC-C-EEE
Confidence 33344321 256788999999776666554 45789999987654433322 11 1 1123666655 3 455
Q ss_pred EEEeCCCcEEEEeCCCCce
Q 004789 689 ALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 689 as~s~Dg~I~iWd~~~~~~ 707 (730)
++-...+.|...|..+++.
T Consensus 228 ~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EECTTTCSEEEEESSSCCC
T ss_pred EecCCCCEEEEEECCCCcc
Confidence 5555678899999877753
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.48 E-value=0.055 Score=55.04 Aligned_cols=201 Identities=10% Similarity=0.000 Sum_probs=123.2
Q ss_pred CeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEE-EcC----CCC--CeEEEEE---cCCC-eEEEEE---------
Q 004789 448 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT-FAN----PPP--IATYFIL---LPQD-LFAFGF--------- 503 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~-~~~----~~~--~v~~i~~---spdg-~l~sgs--------- 503 (730)
.-.+++|. +..|..++ .++|..||...+..... +.. ... .+..+.| .|++ ++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 33478887 55666666 89999999986654433 222 111 3579999 5888 555443
Q ss_pred ----CCCcEEEEecC---CCceEEEEc--C-----------CCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcCCCceec
Q 004789 504 ----DDSSILVHCPC---TKKTKAKLK--G-----------HQNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKKLC 562 (730)
Q Consensus 504 ----~dg~I~iwd~~---~~~~~~~~~--~-----------h~~~V~~l~~spd~~~l~s~s~d-g~I~vwd~~~~~~~~ 562 (730)
.+..|..||+. +++.+.... . -......++..++|+..++++.. +.|..++.......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~- 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS- 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence 25789999999 777665443 1 11247899999999999998888 88888777653211
Q ss_pred ceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecC---CC--CCCCeEEE-EEecCCCEE
Q 004789 563 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP---DK--MDLPITYA-TYSCDGKCI 635 (730)
Q Consensus 563 ~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~dg~I~iwd~~~~~~~~~~~~---~~--h~~~v~~~-~~spdg~~l 635 (730)
...+. ...... ....+.|+++|+|+.|++. ..|.+..+|+.+.... .+.. +. .......+ ..-.+|+.|
T Consensus 173 ~~~~~-~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 173 TFAWE-SGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEC-CCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred eeeec-CCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEE
Confidence 11111 111111 0246799999999988884 5889999998743220 1211 10 11223443 333578774
Q ss_pred E-EEEcCCeEEEEECCCce
Q 004789 636 Y-VSCKSGHVKVFDTSTLE 653 (730)
Q Consensus 636 ~-sgs~dg~I~iwd~~~~~ 653 (730)
+ +...++.+.+.+.+..+
T Consensus 249 lV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEETTEEEEEECSSTTS
T ss_pred EEEcCCCCEEEEECCCCcc
Confidence 4 44456666666665543
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.47 E-value=0.0002 Score=82.43 Aligned_cols=228 Identities=11% Similarity=-0.031 Sum_probs=131.4
Q ss_pred EEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEecCC----CceEEEEcCCCCCeEE
Q 004789 458 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT----KKTKAKLKGHQNRITC 531 (730)
Q Consensus 458 ~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs-~dg~I~iwd~~~----~~~~~~~~~h~~~V~~ 531 (730)
+|+.+..+.|+..++.+......+.. ...+..++|++.+ .|+.+. ..+.|+.+++.. ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 44444556788888877665444433 2345688999876 555554 457899999875 2222222212233567
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e-cCcEEEEeCCC
Q 004789 532 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPT 607 (730)
Q Consensus 532 l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~-dg~I~iwd~~~ 607 (730)
|++.+.+. ++++-...+.|.++++...... . +..... .....++++|.+.+|+.+ . .+.|..+++.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---~---l~~~~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~d- 527 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---T---LFREQG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 527 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEE---E---ECCCSS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceE---E---EEeCCC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCC-
Confidence 88886444 4444455688999998763211 1 111111 245688999976666653 2 3678888874
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCC
Q 004789 608 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 686 (730)
Q Consensus 608 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~ 686 (730)
+.....+... .......++|+|++..|+.+. ..+.|.++++........+... +. - -++.++++.. +.
T Consensus 528 G~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~~-~--~~P~glavd~--~~ 596 (699)
T 1n7d_A 528 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----KR-L--AHPFSLAVFE--DK 596 (699)
T ss_dssp SCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----SS-C--SSCCCCEEET--TE
T ss_pred CCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-----Cc-C--CCceEeEEEC--CE
Confidence 3333333221 144567899998766665544 5578999998764433332211 00 0 1122455544 35
Q ss_pred EEEEEeCCCcEEEEeCCCCce
Q 004789 687 RIALGLTNGRVHVIEPLESEV 707 (730)
Q Consensus 687 ~las~s~Dg~I~iWd~~~~~~ 707 (730)
++++....+.|..++..+++.
T Consensus 597 lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEEECSTTTCEEEEETTTEEE
T ss_pred EEEEeCCCCeEEEEEccCCCc
Confidence 666666778999999876654
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.45 E-value=0.15 Score=57.61 Aligned_cols=198 Identities=9% Similarity=-0.070 Sum_probs=126.6
Q ss_pred CCeeEEEEe--CcEEEEee--CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEecCCCceEE
Q 004789 447 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKA 520 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~s--dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~-sgs~dg~I~iwd~~~~~~~~ 520 (730)
..+..++|+ ++.|+.+. ++.|..+++........+.........+++.+.+ .|+ +-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457789998 55665555 7899999987654444444333456688888776 444 44456789999987554333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE--e
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 596 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s--~ 596 (730)
.+...-.....|++.|....|+.... .+.|...++..... ..+ ..+- .....+++++++..|+.+ .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---~~l---~~~~----~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---TTL---VPNV----GRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE---ECSC----SSEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce---EEE---ECCC----CCcceEEEccccCEEEEEECC
Confidence 33334456789999996656665543 46788888876321 111 1111 467899999988887775 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 004789 597 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 658 (730)
Q Consensus 597 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 658 (730)
.+.|..+|+..... ..+.. .......+++.. +.+.++-...+.|...|..+|+....+
T Consensus 187 ~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 187 TNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 67899999865433 33322 244566788764 344444444788999998777644443
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.39 E-value=0.0062 Score=61.96 Aligned_cols=161 Identities=14% Similarity=0.037 Sum_probs=106.4
Q ss_pred eEEEEEcCCC-eEEEEE-CCCcEEEEecCCCceEEE-EcCC------CCCeEEEEE---eCCCCEEEEEe----------
Q 004789 488 ATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAK-LKGH------QNRITCLAY---SLSLNVLVSSG---------- 545 (730)
Q Consensus 488 v~~i~~spdg-~l~sgs-~dg~I~iwd~~~~~~~~~-~~~h------~~~V~~l~~---spd~~~l~s~s---------- 545 (730)
-.++.|++.. .+..++ ..+.|..||...+..... +.+- ...+..+.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 3478998866 666666 789999999986644333 2210 113578999 68887777543
Q ss_pred ---CCCcEEEEEcC---CCceecceeecccccC------CCCCCCCeEEEEEecCCcEEEE-Eec-CcEEEEeCCCCcee
Q 004789 546 ---ADAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLNHT 611 (730)
Q Consensus 546 ---~dg~I~vwd~~---~~~~~~~~~i~~~~~~------h~~~~~~v~~l~~spdg~~l~~-s~d-g~I~iwd~~~~~~~ 611 (730)
.+..+..||+. +++......+.....+ ... .....++..++|+..++ +.. +.|..++.. ++.+
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEE
Confidence 25779999999 6554332222211111 110 24789999999998887 566 778888874 4333
Q ss_pred eeecC----CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 612 SQLVP----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 612 ~~~~~----~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
..+.. .......+.++++|+|+.|++....|.+..+|+.+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 33221 11133467999999999888887799999999884
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.37 E-value=0.15 Score=51.39 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=143.3
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCC-CceEEEEcCC----CCCeE
Q 004789 456 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT 530 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~-~~~~~~~~~h----~~~V~ 530 (730)
.+.+|.-...+++++|+++...++.+.-. ..|..=.|-.+..|+..+ +..|+-|++.. ..+.+.+..| ...|.
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred ccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEE
Confidence 44555555789999999999999888754 466666776555333333 35899999875 3566666554 35677
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCC----cEEEE-Ee--
Q 004789 531 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ----IHLLS-IH-- 596 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~-------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg----~~l~~-s~-- 596 (730)
.-..+++.++++..+- .|.+.+|..+.+. -+ ..+||. +.. ..+-.+| ..|++ +.
T Consensus 156 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ-~ieGha---a~F--~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQ-PIEGHA---ASF--AQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EE-EECCSE---EEE--EEECCTTCSSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cc-eeeeee---eee--EEEecCCCCCCceEEEEEEec
Confidence 7778899998775432 3678889887632 22 456664 111 2222222 22333 32
Q ss_pred --cCcEEEEeCCCC---c------eeee-ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeeccccc
Q 004789 597 --EGQIDVYEAPTL---N------HTSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 664 (730)
Q Consensus 597 --dg~I~iwd~~~~---~------~~~~-~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 664 (730)
.+.++|.++... . .+.. +..........++..|+.-..++.-+.-|.|++||+.++.++..-...
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--- 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--- 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC---
Confidence 267999998432 1 1111 222223566778889988889999999999999999999988664422
Q ss_pred CCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 665 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 665 ~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
...|. ..+.+. ...-++.....|.|.--.+.+.
T Consensus 301 -----~d~iF--~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 301 -----GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -----SSCEE--EEEEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred -----CCceE--EecccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 44455 445544 3344555558888877776654
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.36 E-value=0.2 Score=52.53 Aligned_cols=261 Identities=9% Similarity=0.012 Sum_probs=157.1
Q ss_pred CcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCC
Q 004789 354 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 433 (730)
Q Consensus 354 g~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~ 433 (730)
..|.|-|+.+... ..+-. -.-.+.-.+|..+.+|.=. ..++.|+|+++......
T Consensus 48 ~~vvIiDl~~~~~---~~rrp-------i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks--------------- 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSN---PIRRP-------ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------------- 101 (494)
T ss_dssp CEEEEEETTSTTS---CEEEE-------CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE---------------
T ss_pred CeEEEEECCCCCc---ceecc-------cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc---------------
Confidence 4677778764322 22211 1122456788887666554 67889998877654111
Q ss_pred CeeEeecccCCCCCCeeEEEEe-CcEEEEeeCCEEEEEEcCC-ceEEEEEcCC----CCCeEEEEEcCCC-e-EEEEE--
Q 004789 434 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-L-FAFGF-- 503 (730)
Q Consensus 434 ~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sdg~I~vwd~~t-~~~~~~~~~~----~~~v~~i~~spdg-~-l~sgs-- 503 (730)
.. ....|.-=.|- .+.|+..++..|+-|++.. ..+++.+..| ...|.....+++. + +++|-
T Consensus 102 -----~~----~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 172 (494)
T 1bpo_A 102 -----HT----MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (494)
T ss_dssp -----EE----CSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE
T ss_pred -----ee----cCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecc
Confidence 11 23456555666 8899999999999999974 4566777655 3467777888888 4 44442
Q ss_pred ----CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCC---CEEEEEeC---CCcEEEEEcCCC---ce-ecceeeccc
Q 004789 504 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGA---DAQLCVWDAVGW---KK-LCSKFLHSF 569 (730)
Q Consensus 504 ----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~---~~l~s~s~---dg~I~vwd~~~~---~~-~~~~~i~~~ 569 (730)
-.|.+.+|..+. +.-+.+.||.+.-..+...-+. ..+..+.. .+.+++.++... .. ...+.+. +
T Consensus 173 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd-v 250 (494)
T 1bpo_A 173 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-V 250 (494)
T ss_dssp ETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE-C
T ss_pred cCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee-e
Confidence 236788999774 4456788886544443332111 23333333 378999998642 10 0001111 1
Q ss_pred ccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 004789 570 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 648 (730)
Q Consensus 570 ~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd 648 (730)
........+...++..++....++. ..-|.|++||+.++.++..-+.. ...|...+......=+++....|.|.--.
T Consensus 251 ~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 251 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEE
Confidence 1111100145567888887667766 78899999999999998776543 55665555555444455555777777666
Q ss_pred CCCce
Q 004789 649 TSTLE 653 (730)
Q Consensus 649 ~~~~~ 653 (730)
++...
T Consensus 329 v~e~~ 333 (494)
T 1bpo_A 329 VEEEN 333 (494)
T ss_dssp ECTTT
T ss_pred Ecccc
Confidence 66544
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.34 E-value=0.21 Score=52.36 Aligned_cols=227 Identities=13% Similarity=0.142 Sum_probs=143.5
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-ceEEEEcCC----CCCeE
Q 004789 456 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGH----QNRIT 530 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-~~~~~~~~h----~~~V~ 530 (730)
.+.+|.-...+++++|+++...++.+.-.. .|..=.|-.+..|+..+ +..|+-|++... .+.+.+..| ...|.
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QII 154 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEE
Confidence 444555558899999999999998887555 45455665454333333 458999999743 566666654 35677
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe--cCCcEEEE-Ee----
Q 004789 531 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IH---- 596 (730)
Q Consensus 531 ~l~~spd~~~l~s~s~-------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s--pdg~~l~~-s~---- 596 (730)
.-..+++.+|++..+- .|.+.+|..+.+. -+ ..+||. +....+.+. +....|++ +.
T Consensus 155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ-~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQ-PIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp EEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EE-EECCSE---EEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred EEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cc-hheeee---eeeEEEecCCCCCCceEEEEEEecCC
Confidence 7778899998775432 4678889887621 22 456664 222222221 11122333 32
Q ss_pred cCcEEEEeCCCC---c------eeee-ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCC
Q 004789 597 EGQIDVYEAPTL---N------HTSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 666 (730)
Q Consensus 597 dg~I~iwd~~~~---~------~~~~-~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 666 (730)
.+.++|.++... . .+.. +..........++..|+.-..++.-+.-|.|++||+.++.++..-...
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs----- 299 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS----- 299 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc-----
Confidence 367999998532 1 1111 122223566778999998889999999999999999999988664422
Q ss_pred CCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 667 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 667 gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
..+|. ..+.+. ...-++.....|.|.--.+.+.
T Consensus 300 ---~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 300 ---GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ---SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred ---CCceE--EecccC-CCCcEEEEccCceEEEEEEccc
Confidence 44455 455555 3445555558888877776654
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.074 Score=57.65 Aligned_cols=249 Identities=8% Similarity=-0.078 Sum_probs=132.9
Q ss_pred cEEEEEEec-CCCEEEEEeC-CCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccC-CCCCCeeEEEE-----
Q 004789 383 RVVRLIYSH-SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL----- 454 (730)
Q Consensus 383 ~V~~v~fsp-dg~~L~s~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~h~~~V~~l~~----- 454 (730)
....|+|+| ++..|+.+.. .+.|++.|.+.+.. ....... ..-.....++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v---------------------~~l~~~~~~~~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML---------------------SSPLNINTIPTNRIRSIAFNKKIE 198 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE---------------------EEEECCTTSSCSBEEEEEECCCBT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE---------------------EEEEccCccccCCCcEEEEeeccc
Confidence 467899998 3554555544 35666666555433 2111100 12235788999
Q ss_pred --e--CcEEEEee-CC-------EEEEEEcCC-ceEE-----EEEcCCCCCeEEEEEcCCC--eEEEEECCCcEEEEecC
Q 004789 455 --R--GSHLFSAS-GG-------KISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 514 (730)
Q Consensus 455 --s--~~~l~s~s-dg-------~I~vwd~~t-~~~~-----~~~~~~~~~v~~i~~spdg--~l~sgs~dg~I~iwd~~ 514 (730)
+ |++|+++. .+ .|.+++... +... ..+... .....++++|++ ++++-..++.|..+|+.
T Consensus 199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 7 77677766 32 266665443 2211 122111 123467889965 55555677789999987
Q ss_pred -------CCce-----------EEE-Ec-CCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC--Cceecceeeccc--
Q 004789 515 -------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSF-- 569 (730)
Q Consensus 515 -------~~~~-----------~~~-~~-~h~~~V~~l~~spd~~~l~s~-s~dg~I~vwd~~~--~~~~~~~~i~~~-- 569 (730)
++.. ... +. +.......++|+|+|+.|+.+ +....|+.+|... +.......+...
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g 357 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence 5543 222 21 223456799999999965444 5567888866543 211000001000
Q ss_pred ccCCCC------CCCCeE-EEEEe-------cCCcEEEE-EecCcEEEEeCCCCceeeeecCCC----------------
Q 004789 570 QTGLVP------ETTIVN-HIQFH-------PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------------- 618 (730)
Q Consensus 570 ~~~h~~------~~~~v~-~l~~s-------pdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~---------------- 618 (730)
..+... .-.... .++.. ++|.++++ ...++|+.++. ++. +.++.+.+
T Consensus 358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCE
T ss_pred CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCC
Confidence 011100 001233 34454 45555555 36788999994 564 44443211
Q ss_pred ------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCceEE
Q 004789 619 ------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELR 655 (730)
Q Consensus 619 ------h~~~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~~~~~ 655 (730)
.-.....++++++ |.+.++=+.+..|+.+++......
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 0123567888886 665555556677888877665433
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.31 E-value=0.56 Score=56.66 Aligned_cols=307 Identities=10% Similarity=0.007 Sum_probs=163.3
Q ss_pred CeeEeecCCCcEEEEeecCCCCCcceeeeecCCCCCCCcEEEEEEecC------CCEEEEEeC-CCcEEEeecCCCcccc
Q 004789 345 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQSL 417 (730)
Q Consensus 345 ~~lat~~~dg~i~lWd~~~~~~~~~~~~~~l~~~gh~~~V~~v~fspd------g~~L~s~s~-dg~I~iWd~~~~~~~~ 417 (730)
..++.+. ++.+..+++++.. -.+..+.. -.+.|.|+++.|. +++++.|.. |++++|+++.+.+...
T Consensus 524 ~~vvva~-g~~l~~fel~~~~-L~~~~~~~-----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQE-LRQISHTE-----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTE-EEEEEEEE-----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCc-eeeecccC-----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 4455553 4677777776311 11222223 3568999999864 368999996 9999999987543210
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe----CcEEEEee-CCEEEEEEc--CCceEEEE--EcCCCCCe
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT--FANPPPIA 488 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~l~s~s-dg~I~vwd~--~t~~~~~~--~~~~~~~v 488 (730)
. +. + +......++.+. ..+|..|- ||.+.-+.+ .+|..... ..-...++
T Consensus 597 ~-------------------~~-L--~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv 654 (1158)
T 3ei3_A 597 K-------------------EM-L--GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 654 (1158)
T ss_dssp E-------------------EE-C--CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCC
T ss_pred E-------------------EE-C--CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCce
Confidence 0 00 0 111233444443 34677776 888765544 45554322 22223445
Q ss_pred EEEEEcCCC--eEEEEECCCcEEEEecCCCceEEEEcCCCCCeE-EEEEeCCC--CEEEEEeCCCcEEEEEcCCCceecc
Q 004789 489 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCS 563 (730)
Q Consensus 489 ~~i~~spdg--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~spd~--~~l~s~s~dg~I~vwd~~~~~~~~~ 563 (730)
.-..+...| .+++.+ +....++--+ ++.... .-....+. ...|+... .-++..+ ++.+++..+.....
T Consensus 655 ~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--- 727 (1158)
T 3ei3_A 655 VLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--- 727 (1158)
T ss_dssp EEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS---
T ss_pred EEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC---
Confidence 444444444 333333 3444444333 332211 11112232 33454321 3455444 55699988765322
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec---------------------------------------------
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------------------------------------------- 597 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d--------------------------------------------- 597 (730)
..+.++.-+ ..+..++++|+.+.+++ ..+
T Consensus 728 ~~~~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 802 (1158)
T 3ei3_A 728 LHIRTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGE 802 (1158)
T ss_dssp EEEEEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCC
T ss_pred eeEEEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCC
Confidence 233333344 35788999987766554 211
Q ss_pred ----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEe---c-CCCEEEEEE----------cCCeEEEEECCCceEEEEee
Q 004789 598 ----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS---C-DGKCIYVSC----------KSGHVKVFDTSTLELRCQIN 659 (730)
Q Consensus 598 ----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s---p-dg~~l~sgs----------~dg~I~iwd~~~~~~~~~~~ 659 (730)
+.|++.|..+.+.+..+.... ...+.+++.- . ...++++|+ ..|.|++|++..+++.....
T Consensus 803 ~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~ 881 (1158)
T 3ei3_A 803 EVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE 881 (1158)
T ss_dssp EEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE
T ss_pred ceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE
Confidence 236778877777766665433 4455555532 2 247888887 24889999997654433322
Q ss_pred cccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 004789 660 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 706 (730)
Q Consensus 660 ~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~ 706 (730)
.. ..+.++ +++-- .| +|++|- ..+|++|++...+
T Consensus 882 ~~-------v~g~v~--al~~~--~g-~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 882 KE-------VKGAVY--SMVEF--NG-KLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EE-------ESSCEE--EEEEE--TT-EEEEEE-TTEEEEEEECTTS
T ss_pred EE-------cCCcCE--EEeee--CC-EEEEEc-CCEEEEEECCCCc
Confidence 11 134566 55432 35 444442 4789999997654
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.18 E-value=0.15 Score=51.50 Aligned_cols=184 Identities=9% Similarity=0.038 Sum_probs=97.0
Q ss_pred CcEEEEee-C----CEEEEEEcCCceEEEEEcCCCC--CeEEEEEcCCC-eEEEEECC------CcEEEEecCCCceEEE
Q 004789 456 GSHLFSAS-G----GKISIFSLETFQTLATFANPPP--IATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAK 521 (730)
Q Consensus 456 ~~~l~s~s-d----g~I~vwd~~t~~~~~~~~~~~~--~v~~i~~spdg-~l~sgs~d------g~I~iwd~~~~~~~~~ 521 (730)
+..++.|+ + ..+.+||..+.+....-..... ....+.+ ++ .++.|+.+ ..+.+||+.+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 66666766 4 6799999988765443222222 2222222 56 66777655 4689999887743222
Q ss_pred --EcCCCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCc
Q 004789 522 --LKGHQNRITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 590 (730)
Q Consensus 522 --~~~h~~~V~~l~~spd~~~l~s~s~---------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~ 590 (730)
+.........+ . -+++.++.|+. -..+.+||+.+.+-. .+........ . .+++.. +++
T Consensus 134 ~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~-~~~~~~-~~~ 202 (306)
T 3ii7_A 134 PSMLTQRCSHGMV-E-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEARK----N-HGLVFV-KDK 202 (306)
T ss_dssp CCCSSCCBSCEEE-E-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSSCCB----S-CEEEEE-TTE
T ss_pred CCCcCCcceeEEE-E-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccchhh----c-ceEEEE-CCE
Confidence 11111111222 2 25666666653 345889999885322 2221222111 1 122222 566
Q ss_pred EEEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceE
Q 004789 591 HLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 654 (730)
Q Consensus 591 ~l~~-s~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~ 654 (730)
.++. |.+ ..+.+||+.+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+-
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 6665 332 458999998765432211111111222222 267788888754 5689999988653
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.07 E-value=0.13 Score=51.92 Aligned_cols=231 Identities=11% Similarity=0.077 Sum_probs=117.5
Q ss_pred CcEEEEee-C----CEEEEEEcCCceEEEEEcCCCCCe-EEEEEcCCC-eEEEEECC-----CcEEEEecCCCceEEE--
Q 004789 456 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK-- 521 (730)
Q Consensus 456 ~~~l~s~s-d----g~I~vwd~~t~~~~~~~~~~~~~v-~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~~~~~~-- 521 (730)
+..++.|+ + ..+.+||+.+.+....-....... .+++. -++ .++.|+.+ ..+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 34455555 3 468899998876433211111111 12222 256 66777654 3688999887643221
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-E
Q 004789 522 LKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 595 (730)
Q Consensus 522 ~~~h~~~V~~l~~spd~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s 595 (730)
+.........+.+ ++..++.|+.++ .+.+||+.+.+-. .+........ . .+++. -+++.++. |
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~-~~~~~-~~~~iyv~GG 163 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNTRRS----S-VGVGV-VGGLLYAVGG 163 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSSCCB----S-CEEEE-ETTEEEEECC
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCCccc----C-ceEEE-ECCEEEEEeC
Confidence 1111111222222 566777777553 4778898875422 2221222211 1 12222 25555555 3
Q ss_pred ec-------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEeecccc
Q 004789 596 HE-------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAY 663 (730)
Q Consensus 596 ~d-------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~ 663 (730)
.+ ..+.+||+.+.+-...-......... +++ .-++++++.|+.+ ..+.+||..+.+-...-. .
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~-- 238 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-M-- 238 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-C--
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-C--
Confidence 32 34899999876543321111111111 222 2367777787765 468999998875433211 1
Q ss_pred cCCCCcccceeeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCceeeeccC
Q 004789 664 AQPGTISLELYPLVIAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP 713 (730)
Q Consensus 664 ~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg-----~I~iWd~~~~~~~w~~~~ 713 (730)
+...... . .+.+ ++.+++.|+.++ .|.+||+.+. .|...+
T Consensus 239 -~~~r~~~--~--~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 283 (302)
T 2xn4_A 239 -NMCRRNA--G--VCAV---NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS 283 (302)
T ss_dssp -SSCCBSC--E--EEEE---TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred -CCccccC--e--EEEE---CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence 1111011 1 2222 567888887654 4888988765 587765
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.04 E-value=0.093 Score=52.96 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=113.3
Q ss_pred CEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEecCCCc---eEEE--EcCCCCCeEEEE
Q 004789 465 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKAK--LKGHQNRITCLA 533 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~~---~~~~--~~~h~~~V~~l~ 533 (730)
..+.+||+.+.+....-..........+...++ .++.|+.+ ..+.+||+.+++ -... +.........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 478999998876433211111111111222356 66777754 369999988765 2221 111111122222
Q ss_pred EeCCCCEEEEEeCC-----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec-----CcEEE
Q 004789 534 YSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDV 602 (730)
Q Consensus 534 ~spd~~~l~s~s~d-----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d-----g~I~i 602 (730)
+ +++.++.|+.+ ..+.+||+.+.+-.. +........ .- +++. -+++.++.| .+ ..+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTARE----GA-GLVV-ASGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE---EEECSSCCB----SC-EEEE-ETTEEEEECCBCSSCBCCCEEE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEE---CCCCCCCcc----cc-eEEE-ECCEEEEECCCCCCcccceEEE
Confidence 2 56677777643 358899988754222 221222211 11 2222 256666653 33 45899
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEeecccccCCCCcccceeeEE
Q 004789 603 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
||+.+.+-...-......... ++ ...++++++.|+.+ ..+.+||+.+.+-...-. .+... ....+
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r----~~~~~ 249 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGA-GV-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPR----CYVGA 249 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCC----BSCEE
T ss_pred EeCCCCcEEeCCCCCcccccc-eE-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcc----cceeE
Confidence 999876543321111111111 22 22367777777764 468999998876433211 11111 11112
Q ss_pred EEEecCCCCEEEEEeCC-----CcEEEEeCCCCceeeeccC
Q 004789 678 IAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 713 (730)
Q Consensus 678 v~~sp~~~~~las~s~D-----g~I~iWd~~~~~~~w~~~~ 713 (730)
+.+ ++.+++.|+.+ ..|.+||+.+. .|...+
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 285 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVVT 285 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEcC
Confidence 222 46788888765 35778888664 576653
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.03 E-value=0.39 Score=49.82 Aligned_cols=228 Identities=10% Similarity=0.060 Sum_probs=122.0
Q ss_pred CCeeEEEEe-CcEEEEee-CCEEEEEEcCCce-EEEEEc---CCCCCeEEEEEcCC----CeEEEEEC----C----CcE
Q 004789 447 DSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI 508 (730)
Q Consensus 447 ~~V~~l~~s-~~~l~s~s-dg~I~vwd~~t~~-~~~~~~---~~~~~v~~i~~spd----g~l~sgs~----d----g~I 508 (730)
.....++|. +..|+++. +|.|++++ .+++ .+..+. ........++++|+ +.|+++.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346788998 33355555 89999997 4454 222221 12356789999998 44444332 3 567
Q ss_pred EEEecCCC-------ce-EEEEcC-CCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCceeccee-
Q 004789 509 LVHCPCTK-------KT-KAKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSKF- 565 (730)
Q Consensus 509 ~iwd~~~~-------~~-~~~~~~-h~~~V~~l~~spd~~~l~s~s~-------------dg~I~vwd~~~~~~~~~~~- 565 (730)
..|+...+ +. +..+.. .......++|.|||.+.++.+. .|.|.-+|.... .....+
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 88887654 11 111221 1123467999999987666432 145555555431 000000
Q ss_pred --ecccccCCCCCCCCeEEEEEec-CCcEEEEE--ecC--cEEEEeCCCCc------------------eeeeecCCCCC
Q 004789 566 --LHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG--QIDVYEAPTLN------------------HTSQLVPDKMD 620 (730)
Q Consensus 566 --i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~s--~dg--~I~iwd~~~~~------------------~~~~~~~~~h~ 620 (730)
......++. ....++|+| +|+.+++- .+. .|.+.. .+. ++..+. ...
T Consensus 187 ~~~~i~a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~ 258 (354)
T 3a9g_A 187 PNSPIWSYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET 258 (354)
T ss_dssp TTCCEEEECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred CCCcEEEEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence 011123332 356899999 67766652 222 244332 221 111220 113
Q ss_pred CCeEEEEEe-------cCCCEEEEEEcCCeEEEEECCCc-eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 621 LPITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 621 ~~v~~~~~s-------pdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
.....++|. .+|.++++....+.|...++... +....-. +.. +. ...+. .+++.| |+.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~~-~~rp~--~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-NV-FGRLR--DVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-TT-SCCEE--EEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-CC-CCCee--EEEECC-CCcEEEEEe
Confidence 457788883 56777777666788888888753 3221111 110 11 22344 899999 787776654
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.02 E-value=0.098 Score=52.79 Aligned_cols=183 Identities=10% Similarity=0.029 Sum_probs=95.5
Q ss_pred CcEEEEee-C-----CEEEEEEcCCce---EEEE--EcCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEecCCCce
Q 004789 456 GSHLFSAS-G-----GKISIFSLETFQ---TLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT 518 (730)
Q Consensus 456 ~~~l~s~s-d-----g~I~vwd~~t~~---~~~~--~~~~~~~v~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~~~ 518 (730)
+..++.|+ + ..+.+||..+.+ .... +........++.+ ++ .++.|+.+ ..+.+||+.+++-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 66667666 4 469999998765 3322 2211122222222 56 66666644 3688999887643
Q ss_pred E--EEEcCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcE
Q 004789 519 K--AKLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 591 (730)
Q Consensus 519 ~--~~~~~h~~~V~~l~~spd~~~l~s~s~d-----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~ 591 (730)
. ..+........++.+ +++.++.|+.+ ..+.+||+.+.+-. .+........ .. +++. -+++.
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~-~~~~-~~~~i 209 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMATKRS----GA-GVAL-LNDHI 209 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSSCCB----SC-EEEE-ETTEE
T ss_pred EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCcccc----cc-eEEE-ECCEE
Confidence 2 222211111222222 66677777654 45889999875322 1221122111 11 2222 25555
Q ss_pred EEEE-ec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCce
Q 004789 592 LLSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 653 (730)
Q Consensus 592 l~~s-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~ 653 (730)
++.| .+ ..+.+||+.+.+-...-......... ++ ..-++++++.|+.+ ..|.+||..+.+
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GA-TVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eE-EEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 5554 32 46999999877643321111111111 22 22367777777765 467889987765
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.00 E-value=0.11 Score=52.73 Aligned_cols=228 Identities=10% Similarity=0.015 Sum_probs=116.9
Q ss_pred EEEEee---CCEEEEEEcCCceEEEEEc--CCCCCeEEEEEcCCC-eEEEEECC----CcEEEEecCCCceEEE--EcCC
Q 004789 458 HLFSAS---GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK--LKGH 525 (730)
Q Consensus 458 ~l~s~s---dg~I~vwd~~t~~~~~~~~--~~~~~v~~i~~spdg-~l~sgs~d----g~I~iwd~~~~~~~~~--~~~h 525 (730)
.++.|+ ...+.+||..+.+....-. ........+. -++ .++.|+.+ ..+.+||+.+++-... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 445555 3679999998876543211 1111222222 356 67777754 5789999987743222 2211
Q ss_pred CCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee--
Q 004789 526 QNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-- 596 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~d------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~-- 596 (730)
......+.+ +++.++.|+.+ ..+.+||..+.+-. .+........ .- +++. -+++.++. |.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH---TKPSMLTQRC----SH-GMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE---EECCCSSCCB----SC-EEEE-ETTEEEEECCEES
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE---eCCCCcCCcc----ee-EEEE-ECCEEEEECCCCC
Confidence 111222222 56677777755 45889999885422 1221222211 11 2222 25555555 32
Q ss_pred -------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEeeccccc
Q 004789 597 -------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYA 664 (730)
Q Consensus 597 -------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~ 664 (730)
-..+.+||+.+.+-...-.. .....-.+++. -++++++.|+.+ ..+.+||+.+.+-... .. .
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SP---M 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CC---C
T ss_pred CCCcccccceEEEeCCCCCeEEECCCc-cchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CC---C
Confidence 24489999987754322111 11111112222 367777777654 4689999988753322 11 1
Q ss_pred CCCCcccceeeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCceeeeccC
Q 004789 665 QPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 713 (730)
Q Consensus 665 ~~gh~~~~v~~~~v~~sp~~~~~las~s~D-----g~I~iWd~~~~~~~w~~~~ 713 (730)
+..... .. ++.+ ++.+++.|+.+ ..+.+||+.+. .|...+
T Consensus 235 p~~r~~--~~--~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~ 279 (306)
T 3ii7_A 235 PWKGVT--VK--CAAV---GSIVYVLAGFQGVGRLGHILEYNTETD--KWVANS 279 (306)
T ss_dssp SCCBSC--CE--EEEE---TTEEEEEECBCSSSBCCEEEEEETTTT--EEEEEE
T ss_pred CCCccc--ee--EEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC--eEEeCC
Confidence 111101 11 2222 56788888854 45788888664 576643
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.95 E-value=0.3 Score=50.70 Aligned_cols=226 Identities=11% Similarity=0.055 Sum_probs=115.4
Q ss_pred CeeEEEEe--CcEEEEeeCCEEEEEEcCCceE--EEEEc---CCCCCeEEEEEcCC----CeEEEEEC-C-----CcEEE
Q 004789 448 SISCFALR--GSHLFSASGGKISIFSLETFQT--LATFA---NPPPIATYFILLPQ----DLFAFGFD-D-----SSILV 510 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~sdg~I~vwd~~t~~~--~~~~~---~~~~~v~~i~~spd----g~l~sgs~-d-----g~I~i 510 (730)
.-..++|. |+++++-.+|.|.+++ +++. +..+. ........++++|+ +.|+++.. . +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 45688998 6644444489999998 4442 22222 12356789999998 44443332 2 57888
Q ss_pred EecCCCc------eEEEEc---CCCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCceecce----
Q 004789 511 HCPCTKK------TKAKLK---GHQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK---- 564 (730)
Q Consensus 511 wd~~~~~------~~~~~~---~h~~~V~~l~~spd~~~l~s~s~-------------dg~I~vwd~~~~~~~~~~---- 564 (730)
++...+. .+..+. +.......++|.|||.+.++.+. .|.|.-+|.... .....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCcccC
Confidence 8877542 112233 11123468999999976665432 145655655431 00000
Q ss_pred ----eecccccCCCCCCCCeEEEEEec-CCcEEEEE--ecC-------cEEEEeCCCCc------------------eee
Q 004789 565 ----FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG-------QIDVYEAPTLN------------------HTS 612 (730)
Q Consensus 565 ----~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~s--~dg-------~I~iwd~~~~~------------------~~~ 612 (730)
.......++. ....++|+| +|+.+++- .+. .|.+.. .+. ++.
T Consensus 189 ~~~~~~~i~a~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 189 RRGARPEVYSLGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTSCTTEEEECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCccEEEEcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeE
Confidence 0011122332 356789999 66666652 222 233332 221 111
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEE-EeecccccCCCCcccceeeEEEEEecCCCCEEEEE
Q 004789 613 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 691 (730)
Q Consensus 613 ~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~ 691 (730)
.+ .+......++| .+|.++++....+.|...++....... ......+.. . ...+. .+++.| ++.++++.
T Consensus 263 ~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~--~~rp~--~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 263 FW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G--FGRLR--EVQVGP-DGALYVTT 332 (352)
T ss_dssp EC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S--SCCEE--EEEECT-TSCEEEEE
T ss_pred ec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c--CCCee--EEEECC-CCcEEEEE
Confidence 11 11234567777 567666665556777777765432100 000001110 1 12344 889999 77766665
Q ss_pred e
Q 004789 692 L 692 (730)
Q Consensus 692 s 692 (730)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.93 E-value=0.93 Score=52.34 Aligned_cols=284 Identities=14% Similarity=0.082 Sum_probs=155.3
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 459 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l 459 (730)
...|.++.-..+|. |..|+.+| +..++..++.... ...+...... . .-....|.++.-. ...|
T Consensus 323 ~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~~--------~~~~~~~~~~---~---~l~~~~v~~i~~d~~g~l 386 (758)
T 3ott_A 323 GNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERHD--------AIWYRMGDKT---Y---PLSHNRIRHIYEDKEQQL 386 (758)
T ss_dssp CCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCCC--------CEEECTTCSS---S---CCSCSCEEEEEECTTSCE
T ss_pred CceEEEEEEcCCCC-EEEeeCCc-ceeecccccccce--------eEEeccCCcC---C---CCCCCceEEEEECCCCCE
Confidence 45799998888888 55566554 5555544321100 0011110000 0 0123568888877 4445
Q ss_pred EEeeCCEEEEEEcCCceEEEEEc-C-----CCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-----ceE---EEEc--
Q 004789 460 FSASGGKISIFSLETFQTLATFA-N-----PPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-----KTK---AKLK-- 523 (730)
Q Consensus 460 ~s~sdg~I~vwd~~t~~~~~~~~-~-----~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-----~~~---~~~~-- 523 (730)
-.|+++-+..||..+++...... . ....|.++...++|.|..|+..+-|.++|..+. ... ..+.
T Consensus 387 Wigt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 387 WIATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EEEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred EEEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccc
Confidence 55666789999998876543221 1 234578888877776667777777888886531 111 1221
Q ss_pred -C-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 004789 524 -G-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 601 (730)
Q Consensus 524 -~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~ 601 (730)
+ ....|.++...++|+..+.++..+-|..+|..+++... +. ..... ....+.++....+|...+++. +.+.
T Consensus 467 ~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~--~~~~~-~~~~~~~i~~d~~g~lWigt~-~Gl~ 539 (758)
T 3ott_A 467 NGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LF--ADELT-GEKSPNYLLCDEDGLLWVGFH-GGVM 539 (758)
T ss_dssp GTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---EC--TTTSC-GGGCEEEEEECTTSCEEEEET-TEEE
T ss_pred cccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ec--CCCcC-CCcccceEEECCCCCEEEEec-CceE
Confidence 1 22458999999888876644445668889988743221 11 00000 003578888888887776654 5688
Q ss_pred EEeCCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEE
Q 004789 602 VYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 680 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 680 (730)
.||..+++.. .+... -....|.++... +|. |..++.+| |..||..+.+... +.. ....+. ...+
T Consensus 540 ~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~~--------~~~~~~--~~~~ 604 (758)
T 3ott_A 540 RINPKDESQQ-SISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QNM--------TNKRFT--SLLF 604 (758)
T ss_dssp EECC--CCCC-BCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C----------CCCCCS--EEEE
T ss_pred EEecCCCceE-EecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ecC--------CCCcee--eeEE
Confidence 8987655432 22111 114557777764 665 45555555 7788988776432 211 022233 3344
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 681 HPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 681 sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.. ....|..|+.+| +..+++..
T Consensus 605 ~~-~~G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 605 DP-KEDCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp ET-TTTEEEEECBSE-EEEEEC--
T ss_pred EC-CCCcEEEecCCc-eEEEChhh
Confidence 43 234666677776 45556653
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.93 E-value=0.052 Score=56.86 Aligned_cols=148 Identities=17% Similarity=0.126 Sum_probs=94.6
Q ss_pred cCCC-eEEEEECCCcEEEEecCCCceEEEEcCC----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec------
Q 004789 494 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC------ 562 (730)
Q Consensus 494 spdg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h----~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~------ 562 (730)
..+| .++.+- ++.||.-++..+...+.+... -..|..+..+|+|++|+..+ +..|.|..+..+....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3445 444433 468888887755444555432 22578899999999999876 5688898887322111
Q ss_pred ------ceeecccccCCCCCCCCeEEEEEecC---CcEEEE-EecCcEEEEeCCCCc--eeeeec-------CCCCCCCe
Q 004789 563 ------SKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLN--HTSQLV-------PDKMDLPI 623 (730)
Q Consensus 563 ------~~~i~~~~~~h~~~~~~v~~l~~spd---g~~l~~-s~dg~I~iwd~~~~~--~~~~~~-------~~~h~~~v 623 (730)
...+........ .+|..+.|+|- +..|++ ..|+.|++||+.... +. .+. .......|
T Consensus 107 ~~~q~~ty~l~~~~~~~~---s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPK---SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HTTEEEEEEGGGCC--CC---CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred cccceeEEEcCCcccCCC---CceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 011110100012 67999999994 456776 799999999997522 11 221 11223678
Q ss_pred EEEEEecCCCEEEEEE--cCCeEEEE
Q 004789 624 TYATYSCDGKCIYVSC--KSGHVKVF 647 (730)
Q Consensus 624 ~~~~~spdg~~l~sgs--~dg~I~iw 647 (730)
.+++|+.+|-.|+..+ ++|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999998888866 88988754
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0022 Score=66.09 Aligned_cols=200 Identities=6% Similarity=-0.042 Sum_probs=108.8
Q ss_pred eEEEEECCCcEEEEecCCCceEEEEcCC-CCCeEEEEE--eCCCCEEEEE--eCCCcEEEEEcCCCceecceeecccccC
Q 004789 498 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTG 572 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~--spd~~~l~s~--s~dg~I~vwd~~~~~~~~~~~i~~~~~~ 572 (730)
.+++++.||.|+-+|..+|+.+-+++.. ..++....- .+.+..++.+ +.||.|..+|..+|.......+.....
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~- 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS- 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT-
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee-
Confidence 7899999999999999999998888653 122222110 0112234433 589999999998875432222221111
Q ss_pred CCCCCCCeEE---EEE------ecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCC-----eEEEEEe-----cCC
Q 004789 573 LVPETTIVNH---IQF------HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP-----ITYATYS-----CDG 632 (730)
Q Consensus 573 h~~~~~~v~~---l~~------spdg~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~h~~~-----v~~~~~s-----pdg 632 (730)
. .++.. ..+ +.++ .+++ +.+|.+...|+++|+.+..+........ ..|.... ..+
T Consensus 91 -~---SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 91 -T---SPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp -T---CSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred -c---cccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 0 12211 001 1234 4555 7999999999999999988865321111 1111110 124
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004789 633 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 709 (730)
Q Consensus 633 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w 709 (730)
..|+.|..+..+.+.+ .+|+ +..+....+.+... ...+. .....+. ++.+ +.++.||.|.-+|..+|..+|
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5677777777777777 4453 22221111100000 00000 0000011 3555 447889999999999999999
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.77 E-value=0.51 Score=48.81 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=110.1
Q ss_pred CeEEEEEcCCCeEEEEE-------------CCCcEEEEecCCC--ceE-EEEcC-----CCCCeEEEEEeC--CCC-EEE
Q 004789 487 IATYFILLPQDLFAFGF-------------DDSSILVHCPCTK--KTK-AKLKG-----HQNRITCLAYSL--SLN-VLV 542 (730)
Q Consensus 487 ~v~~i~~spdg~l~sgs-------------~dg~I~iwd~~~~--~~~-~~~~~-----h~~~V~~l~~sp--d~~-~l~ 542 (730)
..-.++..|+|.+++++ .+|.|.++|+.+. +.. -.+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34467788888334443 6899999998742 221 12222 234677787766 454 344
Q ss_pred EE-eC--CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe----c--------------CcEE
Q 004789 543 SS-GA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----E--------------GQID 601 (730)
Q Consensus 543 s~-s~--dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~----d--------------g~I~ 601 (730)
++ .. +.+|.+|++...... ...+. ...+..- ...+.+++.++|++.++.. | |.|+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~-~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLK-TIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEE-EECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEe-ccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 44 22 457778777653211 11222 1222221 5678999999998777642 1 3455
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC-ceEEE--EeecccccCCCCcccceeeEE
Q 004789 602 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTST-LELRC--QINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 602 iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs-~dg~I~iwd~~~-~~~~~--~~~~~~~~~~gh~~~~v~~~~ 677 (730)
-+|. ++. ..+.. .-...+.++||||++.|+.+. ..+.|+.|++.. ++... .+.. .| ... .
T Consensus 207 r~d~--~~~-~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----~g----~PD--G 270 (355)
T 3sre_A 207 YYSP--NDV-RVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----DT----LVD--N 270 (355)
T ss_dssp EECT--TCC-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----SS----EEE--E
T ss_pred EEEC--CeE-EEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----CC----CCc--e
Confidence 5554 322 22221 145678999999998888765 468999999863 43322 2211 12 123 5
Q ss_pred EEEecCCCCEEEEEeCC-CcEEEEeCC
Q 004789 678 IAAHPLEPNRIALGLTN-GRVHVIEPL 703 (730)
Q Consensus 678 v~~sp~~~~~las~s~D-g~I~iWd~~ 703 (730)
++..+.+|++.+++..+ +.|..|++.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCcEEEEecCCceEEEEECCC
Confidence 66666227777766544 344444443
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.76 E-value=1.2 Score=51.27 Aligned_cols=237 Identities=12% Similarity=0.062 Sum_probs=139.5
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEE
Q 004789 381 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 459 (730)
Q Consensus 381 ~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l 459 (730)
...|.++.-..+|. |-.|+.+| +..||-..-. .+.... ......|.++... ...|
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~-------------~~~~~~---------~~~~~~i~~i~~d~~g~l 76 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ-------------QHFTYG---------ENNNTRIYCGVIIDNTYL 76 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE-------------ECSCTT---------STTSSCEEEEEEETTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE-------------EEEccC---------CCCCceEEEEEEcCCCcE
Confidence 56799999999886 66777776 4445521110 011000 0134568888777 6677
Q ss_pred EEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEc-----CCCCCeEEEEE
Q 004789 460 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAY 534 (730)
Q Consensus 460 ~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~ 534 (730)
..|+++-+..||..+.+...........|.++.. .+|.|..|+.+ -|..+|..+++.. .+. .....|.++..
T Consensus 77 WigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~ 153 (758)
T 3ott_A 77 YMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR 153 (758)
T ss_dssp EEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE
T ss_pred EEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE
Confidence 7777556889999876543211112335777654 35555666665 6888998766543 331 12356888888
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeee
Q 004789 535 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 614 (730)
Q Consensus 535 spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~ 614 (730)
..+|...+ |+.+ -+..+|..++... .+. ...........|.++...+++..|.++.++.+..+|..+++... +
T Consensus 154 d~~g~lWi-gt~~-Gl~~~~~~~~~~~---~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~-~ 226 (758)
T 3ott_A 154 TKDNQIYV-GTYN-GLCRYIPSNGKFE---GIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQ-T 226 (758)
T ss_dssp CTTCCEEE-EETT-EEEEEETTTTEEE---EEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEE-E
T ss_pred cCCCCEEE-EeCC-CHhhCccCCCceE---Eec-CCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEe-c
Confidence 87887655 4444 5778888764321 111 11110000035888888887776555545578899987665322 2
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004789 615 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 654 (730)
Q Consensus 615 ~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~ 654 (730)
... ....|.++....+|.+.+. +. +-+.+++..+++.
T Consensus 227 ~~l-~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 227 EAF-HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPL 263 (758)
T ss_dssp EEE-EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCC
T ss_pred cCC-CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcE
Confidence 110 1345788887777775554 44 4588899877654
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.76 E-value=0.45 Score=48.25 Aligned_cols=226 Identities=11% Similarity=0.052 Sum_probs=113.8
Q ss_pred eCCEEEEEEcCCceEEE-EEcCCCCCeEEEEEcCCC-eEEEEEC-----C------CcEEEEecCCCceEEEEcCCCCCe
Q 004789 463 SGGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAKLKGHQNRI 529 (730)
Q Consensus 463 sdg~I~vwd~~t~~~~~-~~~~~~~~v~~i~~spdg-~l~sgs~-----d------g~I~iwd~~~~~~~~~~~~h~~~V 529 (730)
+...+.+||..+++-.. .+..+.....+.+...++ .++.|+. . ..+.+||..+++- ..+.....+-
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-LGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-EECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE-EECCCCCcch
Confidence 34789999999887543 222222333344444566 6666763 1 1378889887643 2221111110
Q ss_pred --EEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e-c
Q 004789 530 --TCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E 597 (730)
Q Consensus 530 --~~l~~spd~~~l~s~s~d--------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~-d 597 (730)
.+++.. ++..++.|+.+ ..+.+||..+.+-. .+..+..... . .+++. -+++.++.| . +
T Consensus 90 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~-~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVVY----G-HTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSSCCB----S-CEEEE-ETTEEEEECCBCT
T ss_pred hceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCCccc----c-eeEEE-ECCEEEEEeCCCC
Confidence 122222 56666666632 45889999875322 1221122111 1 12222 355555554 3 2
Q ss_pred -----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEEEeecccccCCC
Q 004789 598 -----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPG 667 (730)
Q Consensus 598 -----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~~~g 667 (730)
..+.+||..+.+-...-........ .+++ .-++++++.|+.++ .+.+||..+.+-...-. .+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~ 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhc-eEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc
Confidence 3589999987654322111111111 1222 23677788887654 58899998875333211 1111
Q ss_pred CcccceeeEEEEEecCCCCEEEEEeCCC--------------cEEEEeCCCCceeeeccCC
Q 004789 668 TISLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKLPF 714 (730)
Q Consensus 668 h~~~~v~~~~v~~sp~~~~~las~s~Dg--------------~I~iWd~~~~~~~w~~~~~ 714 (730)
.... . .+.+ ++.+++.|+.++ .|.+||+.+. .|....+
T Consensus 234 r~~~--~--~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~ 285 (315)
T 4asc_A 234 RSSL--S--LVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGVLR 285 (315)
T ss_dssp CBSC--E--EEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEEES
T ss_pred ccce--e--EEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhhcc
Confidence 1011 1 2222 467778777642 3667777654 6877633
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.69 E-value=0.53 Score=48.79 Aligned_cols=236 Identities=10% Similarity=0.059 Sum_probs=121.7
Q ss_pred CeeEEEEe--CcEEEEee-CCEEEEEEcCCceEEEEEc-------CCCCCeEEEEEcCC----CeEEEEE-C-------C
Q 004789 448 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----DLFAFGF-D-------D 505 (730)
Q Consensus 448 ~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~~~~~-------~~~~~v~~i~~spd----g~l~sgs-~-------d 505 (730)
....|+|. |+.|+++. .|.|++++.. +.....+. ........++++|+ +.|+++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45688888 66244455 8999999854 33221111 12346689999996 4443332 2 2
Q ss_pred CcEEEEecCCC--c--eEEE-EcC------CCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCcee
Q 004789 506 SSILVHCPCTK--K--TKAK-LKG------HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKL 561 (730)
Q Consensus 506 g~I~iwd~~~~--~--~~~~-~~~------h~~~V~~l~~spd~~~l~s~s~-------------dg~I~vwd~~~~~~~ 561 (730)
..|..|++..+ . .... +.. .......++|.|||.+.++.+. .|.|.-+|.... ..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence 35666766533 1 1111 111 1112457999999966555433 245666676541 00
Q ss_pred cce--------eecccccCCCCCCCCeEEEEEec-CCcEEEEE--ecCcEEEEeCCCCce--------------------
Q 004789 562 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEGQIDVYEAPTLNH-------------------- 610 (730)
Q Consensus 562 ~~~--------~i~~~~~~h~~~~~~v~~l~~sp-dg~~l~~s--~dg~I~iwd~~~~~~-------------------- 610 (730)
... .......++. ....++|+| +|+..++- .++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 0111123332 467899999 66665552 222222222222111
Q ss_pred -----------eeeecCCCCCCCeEEEEEec-------CCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccc
Q 004789 611 -----------TSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 672 (730)
Q Consensus 611 -----------~~~~~~~~h~~~v~~~~~sp-------dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~ 672 (730)
+..+ .+......++|.. +|.++++....+.|...++..++...... +.. +. ...
T Consensus 253 ~~~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~-~~r 324 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-DR-GQR 324 (353)
T ss_dssp CBSSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-GG-CCC
T ss_pred cCCCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-CC-CCc
Confidence 0111 1123566778763 56777777677888888887665433211 110 10 123
Q ss_pred eeeEEEEEecCCCCEEEEEe-CCCcEEEEeC
Q 004789 673 LYPLVIAAHPLEPNRIALGL-TNGRVHVIEP 702 (730)
Q Consensus 673 v~~~~v~~sp~~~~~las~s-~Dg~I~iWd~ 702 (730)
+. .+++.| ++.++++.. .+| +||.+
T Consensus 325 p~--~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 325 IR--DVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EE--EEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred ee--EEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 44 899999 788666543 344 44444
No 321
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=96.56 E-value=0.0024 Score=57.80 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=74.5
Q ss_pred hhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccccccccccCCCC---ChhhHHHHHHHHH
Q 004789 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTN---ATSSRAKLIDSLK 156 (730)
Q Consensus 80 ~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~---~~~~r~~l~~~l~ 156 (730)
++|+|+-|.|||||..|+..+|..||++.-.-+...+.+.+++|+.+....++.+++....+.. .-...+.....|.
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 9999999999999999999999999998665666668899999999888877777666665432 3334556667777
Q ss_pred HhhhccccccccccCCCCchhHHHHHHHhhC
Q 004789 157 LLVKENRILQDKLIFPCVNNSALSSLIKLIC 187 (730)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~rL~~ll~q~~ 187 (730)
.++.. -...-|..+|++.+
T Consensus 132 ~fL~~------------~~~~~ll~Iin~~i 150 (156)
T 2nxp_A 132 RHLQE------------KQNNQIWNIVQEHL 150 (156)
T ss_dssp HHHTT------------STTCHHHHHHHHTC
T ss_pred HHHHH------------cCChHHHHHHHHhe
Confidence 77766 33557888888855
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.45 E-value=0.14 Score=52.74 Aligned_cols=115 Identities=14% Similarity=-0.043 Sum_probs=67.5
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---CcEEEE--E
Q 004789 521 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I 595 (730)
Q Consensus 521 ~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd---g~~l~~--s 595 (730)
.+...-...+.++|.|||+++++-...|.|++++..++.......+..+..... .....|+++|+ +..|++ +
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~---~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGE---GGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTT---BSEEEEEECTTHHHHCEEEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCC---CCceeeEeccccccCCEEEEEEe
Confidence 343344567899999999987776558999999876543211111111111112 46889999995 445544 2
Q ss_pred --ecCcEEEEeCCCC----------cee-eeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 596 --HEGQIDVYEAPTL----------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 596 --~dg~I~iwd~~~~----------~~~-~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
.++.|.-|.+..+ +.+ ..+.. ........++|.|||.+.++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 3456776766541 111 11221 1123456799999998766654
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.45 E-value=0.36 Score=48.81 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=116.1
Q ss_pred CcEEEEee-C----CEEEEEEcCCceEEEEEcCCCCCe-EEEEEcCCC-eEEEEEC----C-----CcEEEEecCCCceE
Q 004789 456 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKTK 519 (730)
Q Consensus 456 ~~~l~s~s-d----g~I~vwd~~t~~~~~~~~~~~~~v-~~i~~spdg-~l~sgs~----d-----g~I~iwd~~~~~~~ 519 (730)
+..++.|+ + ..+.+||..+.+....-....... .+++. -++ .++.|+. + ..+.+||+.+.+-.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 55555555 2 578999998876543211111111 12222 255 6666665 2 46889998876422
Q ss_pred EE--EcCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 520 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 520 ~~--~~~h~~~V~~l~~spd~~~l~s~s~d-----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
.. +.........+.+ +++.++.|+.+ ..+.+||+.+.+-.. +........ .- +++.. +++.+
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~~-~~~~~-~~~iy 172 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTRRI----GV-GVAVL-NRLLY 172 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSSCCB----SC-EEEEE-TTEEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCcccc----ce-EEEEE-CCEEE
Confidence 21 1111112222222 56667776643 468899998754221 211122111 11 22222 55555
Q ss_pred EEE-ec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEeecc
Q 004789 593 LSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 593 ~~s-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~ 661 (730)
+.| .+ ..+.+||+.+.+-...-......... +++. -++++++.|+.+ ..+.+||+.+.+-... ..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~- 248 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-AP- 248 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CC-
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-CC-
Confidence 553 32 45899999876543221111111112 2222 267777777765 5689999988753322 11
Q ss_pred cccCCCCcccceeeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCceeeeccC
Q 004789 662 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 713 (730)
Q Consensus 662 ~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D-----g~I~iWd~~~~~~~w~~~~ 713 (730)
.+..... . +++.. ++.+++.|+.+ ..|.+||+.+. .|...+
T Consensus 249 --~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 294 (308)
T 1zgk_A 249 --MKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEVT 294 (308)
T ss_dssp --CSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEE
T ss_pred --CCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeecC
Confidence 1111101 1 22222 56788888754 35778888764 577653
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.44 E-value=0.51 Score=47.40 Aligned_cols=183 Identities=11% Similarity=0.066 Sum_probs=94.8
Q ss_pred CcEEEEee-C-----CEEEEEEcCCceEEEEEcCCC--CCeEEEEEcCCC-eEEEEECCC-----cEEEEecCCCceEEE
Q 004789 456 GSHLFSAS-G-----GKISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK 521 (730)
Q Consensus 456 ~~~l~s~s-d-----g~I~vwd~~t~~~~~~~~~~~--~~v~~i~~spdg-~l~sgs~dg-----~I~iwd~~~~~~~~~ 521 (730)
+..++.|+ + ..+.+||..+.+....-.... .....+. -++ .++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 66667766 4 368999998876443322111 1222222 256 666676553 588899887643221
Q ss_pred --EcCCCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEE
Q 004789 522 --LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 592 (730)
Q Consensus 522 --~~~h~~~V~~l~~spd~~~l~s~s~d-------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l 592 (730)
+....... +++.. +++.++.|+.+ ..+.+||+.+.+-. .+........ .. +++.. +++.+
T Consensus 140 ~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~-~~~~~-~~~iy 208 (302)
T 2xn4_A 140 APMNTRRSSV-GVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT---YIAEMSTRRS----GA-GVGVL-NNLLY 208 (302)
T ss_dssp CCCSSCCBSC-EEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE---EECCCSSCCB----SC-EEEEE-TTEEE
T ss_pred CCCCCcccCc-eEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE---ECCCCccccc----cc-cEEEE-CCEEE
Confidence 11111111 22222 56666666542 35889999875322 1221222211 11 22222 56666
Q ss_pred EEE-ec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCce
Q 004789 593 LSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE 653 (730)
Q Consensus 593 ~~s-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg-----~I~iwd~~~~~ 653 (730)
+.| .+ +.+.+||+.+.+-...-........ ..+ ...++++++.|+.++ .+.+||..+.+
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGV-CAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeE-EEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 664 33 3699999987654322111111111 122 223677777877653 58999998775
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.15 Score=52.28 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=103.5
Q ss_pred EEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEe-e-CCEEEEEE
Q 004789 395 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFS 471 (730)
Q Consensus 395 ~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~-s-dg~I~vwd 471 (730)
.++.++.||.|.-.|..+++. .|..+.+.............. . +..++.. . ||.|..++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~------------~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI------------IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE------------EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcE------------EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEE
Confidence 588899999999999888875 676654410000000001000 2 3444443 4 99999999
Q ss_pred cCCceEEEEEcC----CCCCeEE---EEE------cCCCeEEEEECCCcEEEEecCCCceEEEEcCCC--CC-----eEE
Q 004789 472 LETFQTLATFAN----PPPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--NR-----ITC 531 (730)
Q Consensus 472 ~~t~~~~~~~~~----~~~~v~~---i~~------spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~--~~-----V~~ 531 (730)
..+|.....+.. ...++.. ..+ +.++.+++|+.+|.+...|+.+|+.+..+.... +. ..|
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~ 153 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccc
Confidence 998866554431 1122221 001 123388999999999999999999999886421 11 111
Q ss_pred EEEe-----CCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCe-EEEEEecCCcEEEEEecCcEEEEeC
Q 004789 532 LAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVYEA 605 (730)
Q Consensus 532 l~~s-----pd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v-~~l~~spdg~~l~~s~dg~I~iwd~ 605 (730)
.... ..+..++.+..+..+.+.+ ++++ ........ ...... ...+ ..-..+.|+.+++++.||.|..+|.
T Consensus 154 ~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~-~~~~~~-~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 154 SPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYST-WQQNVL-DVPLALQNTFSKDGMCIAPFRDKSLLASDL 229 (339)
T ss_dssp -----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEE-EECCTT-THHHHTTCSSCSSSCCEEEETTTEEEEECS
T ss_pred ccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccc-cccccc-ccccccccccccCCcEEEECCCCEEEEEEC
Confidence 1111 1235677777777766666 3432 11111110 000000 0000 0001123466666667888888888
Q ss_pred CCCceee
Q 004789 606 PTLNHTS 612 (730)
Q Consensus 606 ~~~~~~~ 612 (730)
.+|..+.
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 7777654
No 326
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.36 E-value=0.0011 Score=52.27 Aligned_cols=64 Identities=13% Similarity=0.306 Sum_probs=50.0
Q ss_pred ccccCccchhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch--HHHHHHHHhCCCHHHHHHHhccc
Q 004789 5 KMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSAF 68 (730)
Q Consensus 5 ~~~~~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 68 (730)
+|++..+.++|+-+-|++||...||.+++.+|.+|.|+..+ ...=.+-+++-+|..|.++=+++
T Consensus 2 ~miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 2 AMVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 45666668899999999999999999999999999998875 22234567777888777766555
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.33 E-value=0.23 Score=59.79 Aligned_cols=227 Identities=13% Similarity=0.155 Sum_probs=131.2
Q ss_pred CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-ceEEEEcCC----CCCeE
Q 004789 456 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGH----QNRIT 530 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-~~~~~~~~h----~~~V~ 530 (730)
.+.+|.-...+++|+|+++...++.+.-.. .|..=.|-.+..|+..+ +..|+.|++... .+.+.+..| ...|.
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIi 154 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeE
Confidence 344554457899999999888877766443 45555665544333322 358999999643 444444444 45677
Q ss_pred EEEEeCCCCEEEEEe-------CCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe--cCCcEEEE-E----e
Q 004789 531 CLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-I----H 596 (730)
Q Consensus 531 ~l~~spd~~~l~s~s-------~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s--pdg~~l~~-s----~ 596 (730)
.-..+++.+|++..| ..|.+.+|....+ +.....||. +....+... +....+++ + .
T Consensus 155 nY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha---~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred EeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhH---hhhheeccCCCCCCceEEEEEEecCC
Confidence 777888998877543 3478888988762 122455664 222222221 12222332 3 2
Q ss_pred cCcEEEEeCCCC---ce------eee-ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCC
Q 004789 597 EGQIDVYEAPTL---NH------TSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 666 (730)
Q Consensus 597 dg~I~iwd~~~~---~~------~~~-~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 666 (730)
.+.++|.++... .. +.. +..........++..|+.-..++.-+.-|.|++||+.||..+..-..+
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris----- 299 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS----- 299 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc-----
Confidence 367888888542 11 111 111112445567788888788888899999999999999876543211
Q ss_pred CCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 004789 667 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 667 gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~~ 705 (730)
..+|. ..+.+...+. ++.....|.|.--.+.+.
T Consensus 300 ---~~~iF--~~~~~~~~~g-~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 300 ---GETIF--VTAPHEATAG-IIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ---CCceE--EeccCCCCCc-eEEEcCCceEEEEEEccc
Confidence 33344 3333331233 333335666655555443
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.33 E-value=0.28 Score=51.47 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=102.0
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc--CCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc--
Q 004789 534 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-- 609 (730)
Q Consensus 534 ~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~--~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~-- 609 (730)
...+|..++.+- ++.||.-++.... ..+.+. ... .. ..|..+..+|+|++||...+..|.|..+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~-~~~~i~f----~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLN-FSRHLVL----DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSN 99 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCS--SCEEEE-CTTTCCC----CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSC
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCC--cceEEe-cCccccc----CceeEEEECCCCCEEEEecCCeEEEEEecCcccc
Confidence 344566665543 5778887877422 122222 111 11 25888999999999999888899999987332
Q ss_pred ----------eeeeecCCC----CCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCce--EEEEeecc--cccCCCC
Q 004789 610 ----------HTSQLVPDK----MDLPITYATYSCD---GKCIYVSCKSGHVKVFDTSTLE--LRCQINLT--AYAQPGT 668 (730)
Q Consensus 610 ----------~~~~~~~~~----h~~~v~~~~~spd---g~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~--~~~~~gh 668 (730)
..+.+..+. ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+... .+.....
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR 178 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc
Confidence 112333221 2577999999984 5689999999999999998632 22 22211 1111111
Q ss_pred cccceeeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCceeeec
Q 004789 669 ISLELYPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGK 711 (730)
Q Consensus 669 ~~~~v~~~~v~~sp~~~~~las~s--~Dg~I~iWd~~~~~~~w~~ 711 (730)
...|. +++|.+ ++-.|...+ ..|.|+-.-+--+. +|..
T Consensus 179 -~~ev~--S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~-~~~~ 218 (452)
T 3pbp_A 179 -VNDIT--DLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS-VLLL 218 (452)
T ss_dssp -CCCEE--EEEECT-TSSCEEEEECTTSCEEEEESSCCCS-EEEC
T ss_pred -cceEE--EEEEcC-CCcEEEEEecCCCCCEEEECCCCcc-cccc
Confidence 23455 899988 666555544 77888877766554 4544
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.30 E-value=0.5 Score=48.89 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=101.4
Q ss_pred CCEEEEEEcCC--ceEE-EEEcC-----CCCCeEEEEEcC--CC--eEEEEEC---CCcEEEEecCCC----ceEEEEcC
Q 004789 464 GGKISIFSLET--FQTL-ATFAN-----PPPIATYFILLP--QD--LFAFGFD---DSSILVHCPCTK----KTKAKLKG 524 (730)
Q Consensus 464 dg~I~vwd~~t--~~~~-~~~~~-----~~~~v~~i~~sp--dg--~l~sgs~---dg~I~iwd~~~~----~~~~~~~~ 524 (730)
+|.|.++|.++ ++.. -.+.+ .......+.+.+ ++ +|+++.. +.+|.+|++..+ ..+..+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 78999999874 2221 12222 123556777655 45 5555532 457777776543 22334443
Q ss_pred C-CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEe
Q 004789 525 H-QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 586 (730)
Q Consensus 525 h-~~~V~~l~~spd~~~l~s~s~-----------------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~s 586 (730)
. -...+++++.++|.+.++... .|.|..+|... . ..+ ..+- ...+.++|+
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~---~~~---~~~l----~~pNGia~s 229 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--V---RVV---AEGF----DFANGINIS 229 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--C---EEE---EEEE----SSEEEEEEC
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--E---EEe---ecCC----cccCcceEC
Confidence 2 346789999999987776541 23444444421 1 111 1111 246789999
Q ss_pred cCCcEEEEE--ecCcEEEEeCCC-Cce--eeeecCCCCCCCeEEEEEec-CCCEEEEEEcC-CeEEEEECC
Q 004789 587 PDQIHLLSI--HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS 650 (730)
Q Consensus 587 pdg~~l~~s--~dg~I~iwd~~~-~~~--~~~~~~~~h~~~v~~~~~sp-dg~~l~sgs~d-g~I~iwd~~ 650 (730)
||++.|+++ ..+.|+.|++.. +.. .+.+. .....-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 999998885 567899999863 332 22332 145677889998 59887766544 344444433
No 330
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=96.26 E-value=0.00059 Score=60.86 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=74.8
Q ss_pred chhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccccccccccCCC---CChhhHHHHHHHH
Q 004789 79 KMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYT---NATSSRAKLIDSL 155 (730)
Q Consensus 79 ~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~---~~~~~r~~l~~~l 155 (730)
+++|+|+.|.||||+..| .++|..|+.+.-.-+...+.+.+++|+.+....++.+++....+. -.....+..++.|
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL 112 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLL 112 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHH
Confidence 399999999999999999 999999999865555555778888888887776666655544331 1334455677778
Q ss_pred HHhhhccccccccccCCCCchhHHHHHHHhhC
Q 004789 156 KLLVKENRILQDKLIFPCVNNSALSSLIKLIC 187 (730)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~~~rL~~ll~q~~ 187 (730)
..++..+.. ...+-|..+|++.|
T Consensus 113 ~~fL~~~~~---------~gg~~ll~Iin~~i 135 (148)
T 2j49_A 113 LYFLNENES---------IGGSLIISVINQHL 135 (148)
T ss_dssp HHHHHHTGG---------GTHHHHHHHHHHHE
T ss_pred HHHHHHcCc---------ccHHHHHHHHHHhe
Confidence 888877666 56668999999955
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.98 E-value=0.79 Score=46.21 Aligned_cols=175 Identities=10% Similarity=0.010 Sum_probs=88.8
Q ss_pred CEEEEEEcCCceEEEEEc--CCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEecCCCceEEE--EcCCCCCeEEEEE
Q 004789 465 GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY 534 (730)
Q Consensus 465 g~I~vwd~~t~~~~~~~~--~~~~~v~~i~~spdg-~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~ 534 (730)
..+.+||..+.+....-. ........+.+ ++ .++.|+.+ ..+.+||+.+.+-... +.........+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468899998876433221 11112222222 56 66666543 3688999887643221 1111111222222
Q ss_pred eCCCCEEEEEeCC-----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-ec-----CcEEEE
Q 004789 535 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDVY 603 (730)
Q Consensus 535 spd~~~l~s~s~d-----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~d-----g~I~iw 603 (730)
++..++.|+.+ ..+.+||+.+.+-. .+........ .. +++.. +++.++.| .+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWR---MITAMNTIRS----GA-GVCVL-HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEE---ECCCCSSCCB----SC-EEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEe---eCCCCCCccc----cc-eEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence 56677777654 45889999875422 1221111111 11 22222 56665554 33 459999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceE
Q 004789 604 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 654 (730)
Q Consensus 604 d~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~ 654 (730)
|+.+.+-...-........ .+++. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 237 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 9987654322111111111 12222 367777777754 4678888887653
No 332
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.93 E-value=0.33 Score=50.35 Aligned_cols=106 Identities=8% Similarity=-0.031 Sum_probs=62.1
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC---CcEEEEE--ec---
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLSI--HE--- 597 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd---g~~l~~s--~d--- 597 (730)
-.....++|.|+|+++++ ..+|.|.+++ .++......+. ...... .....++++|+ +..|+++ ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~-v~~~g~---~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS-VYHRGE---SGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC-CCCSTT---CSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce-EeecCC---CCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 345789999999985554 5679999998 33221111111 111111 46789999998 5666653 22
Q ss_pred --CcEEEEeCCCCc-----ee-eeecC-CCCCCCeEEEEEecCCCEEEEE
Q 004789 598 --GQIDVYEAPTLN-----HT-SQLVP-DKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 598 --g~I~iwd~~~~~-----~~-~~~~~-~~h~~~v~~~~~spdg~~l~sg 638 (730)
+.|..|+...+. .+ ..+.. .........++|.|||.+.++.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 678888876431 11 11321 1112234689999999765554
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.91 E-value=0.96 Score=46.63 Aligned_cols=59 Identities=3% Similarity=-0.101 Sum_probs=30.2
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC------eEEEEECCCceEEEEee
Q 004789 599 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQIN 659 (730)
Q Consensus 599 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg------~I~iwd~~~~~~~~~~~ 659 (730)
.+.+||+.+.+-...-........ ..+...++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 578999886653322111111121 222335778888888652 46667888887665543
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.91 E-value=0.34 Score=58.30 Aligned_cols=239 Identities=10% Similarity=0.046 Sum_probs=134.3
Q ss_pred EEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEEeeC
Q 004789 386 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASG 464 (730)
Q Consensus 386 ~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s~sd 464 (730)
+.-.+|..+.+|.= ...++.|+|+++...... . ....+|.-=.|- .+.|+..++
T Consensus 70 sAIMnP~~~iiALr-ag~~lQiFnl~~k~klks--------------------~----~~~e~VvfWkWis~~~l~lVT~ 124 (1630)
T 1xi4_A 70 SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKA--------------------H----TMTDDVTFWKWISLNTVALVTD 124 (1630)
T ss_pred hhccCCCcceEEEe-cCCeEEEeehHHhhhhcc--------------------c----ccCCCceEEEecCCCeeEEEcC
Confidence 45567877755544 367899999876654111 0 123445444555 888999999
Q ss_pred CEEEEEEcCC-ceEEEEEcCC----CCCeEEEEEcCCC-e-EEEEE------CCCcEEEEecCCCceEEEEcCCCCCeEE
Q 004789 465 GKISIFSLET-FQTLATFANP----PPIATYFILLPQD-L-FAFGF------DDSSILVHCPCTKKTKAKLKGHQNRITC 531 (730)
Q Consensus 465 g~I~vwd~~t-~~~~~~~~~~----~~~v~~i~~spdg-~-l~sgs------~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 531 (730)
..|+-|++.. ..+++.+..| ...|..-..+++. + +++|- -.|.+.+|..+.+ .-+.+.||.+....
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhhe
Confidence 9999999964 3444444444 3467777788888 4 44442 3478888887643 34556677554443
Q ss_pred EEEe--CCCCEEEE-EeC---CCcEEEEEcCCC-ceec---ceeecc-cccCCCCCCCCeEEEEEecCCcEEEE-EecCc
Q 004789 532 LAYS--LSLNVLVS-SGA---DAQLCVWDAVGW-KKLC---SKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 599 (730)
Q Consensus 532 l~~s--pd~~~l~s-~s~---dg~I~vwd~~~~-~~~~---~~~i~~-~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~ 599 (730)
+... +....|++ +.. .+.++|.++... .... .+.+.. ++.... .+...++..++....+.. ..-|.
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ--NDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc--cCcceEEEeccccCEEEEEecCce
Confidence 3332 11122222 221 368889888552 1000 011110 111111 033456777776555555 78899
Q ss_pred EEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004789 600 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 654 (730)
Q Consensus 600 I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~ 654 (730)
|++||+.++.++..-+.. ..+|...+.+....=+++....|.|.--.++....
T Consensus 282 ~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 999999999987654432 34444444333322333344667666666555443
No 335
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=95.87 E-value=0.0022 Score=56.52 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=68.7
Q ss_pred hhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhccccccccccccCC---CCChhhHHHHHHHHH
Q 004789 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGY---TNATSSRAKLIDSLK 156 (730)
Q Consensus 80 ~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~---~~~~~~r~~l~~~l~ 156 (730)
++|+|+.|.||||+..|+.++|..|+.+.-.-+... .+.+++|+.+....++.+++....+ .-.....+...+.|.
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 999999999999999999999999999876666566 8889999888887777666555433 113333445566666
Q ss_pred HhhhccccccccccCCCCchhHHHHHHHhhC
Q 004789 157 LLVKENRILQDKLIFPCVNNSALSSLIKLIC 187 (730)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~rL~~ll~q~~ 187 (730)
.++..+ ...-|..+|++.|
T Consensus 112 ~fL~~~------------~~~~ll~Iin~~i 130 (138)
T 2j4b_A 112 NFLEER------------NLTYILKILNQHL 130 (138)
T ss_dssp HHHHHT------------TCHHHHHHHHHHE
T ss_pred HHHHHC------------CChHHHHHHHHhe
Confidence 666652 2457888888844
No 336
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.85 E-value=0.41 Score=49.67 Aligned_cols=104 Identities=12% Similarity=-0.015 Sum_probs=61.6
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccc--ccCCCCCCCCeEEEEEecC---CcEEEEE-e---
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF--QTGLVPETTIVNHIQFHPD---QIHLLSI-H--- 596 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~--~~~h~~~~~~v~~l~~spd---g~~l~~s-~--- 596 (730)
-.....++|.|+|++++ +..+|.|+++|. .++ ..+..+ ..... .....|+++|+ +..|+++ .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~----~~~~~~~v~~~g~---~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGK----KLVASFDVANVGE---AGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCE----EEEEECCCCCSTT---CSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc----eEeeccceeecCC---CceeeEEeCCCCCcCCEEEEEEeccC
Confidence 34578999999998555 456699999974 332 112111 11111 46789999997 5555553 3
Q ss_pred -c----CcEEEEeCCCC-------cee-eeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 597 -E----GQIDVYEAPTL-------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 597 -d----g~I~iwd~~~~-------~~~-~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
+ +.|..|+.... +.+ ..+.. ........++|.|||.+.++.+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECC
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEEC
Confidence 2 56888887543 111 11221 1122346799999998666543
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.81 E-value=1.2 Score=44.91 Aligned_cols=175 Identities=13% Similarity=0.053 Sum_probs=85.9
Q ss_pred EEEEEcCCceEEEEEcCCCCCe-EEEEEcCCC-eEEEEECC--------CcEEEEecCCCceEE--EEcCCCCCeEEEEE
Q 004789 467 ISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKA--KLKGHQNRITCLAY 534 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~~~~v-~~i~~spdg-~l~sgs~d--------g~I~iwd~~~~~~~~--~~~~h~~~V~~l~~ 534 (730)
+.+||..+.+....-....... .+++.. ++ .++.|+.+ ..+.+||+.+++-.. .+....... +++.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE
Confidence 7889998876532211111111 122222 55 66666632 368999998764221 111111111 2222
Q ss_pred eCCCCEEEEEeC-C-----CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecC-----cEEE
Q 004789 535 SLSLNVLVSSGA-D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDV 602 (730)
Q Consensus 535 spd~~~l~s~s~-d-----g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg-----~I~i 602 (730)
.+++.++.|+. + ..+.+||+.+.+-. .+........ . .+++.. +++.++. |.++ .+.+
T Consensus 147 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 147 -HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK---ELAPMQTARS----L-FGATVH-DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp -ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE---ECCCCSSCCB----S-CEEEEE-TTEEEEEEEECSSSEEEEEEE
T ss_pred -ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE---ECCCCCCchh----c-eEEEEE-CCEEEEEeccCCCCccceEEE
Confidence 35667777765 2 46899999875322 1221222111 1 122222 5566555 4432 5889
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCceEE
Q 004789 603 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELR 655 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d--------------g~I~iwd~~~~~~~ 655 (730)
||+.+.+-...-......... +++ .-++++++.|+.+ ..+.+||+.+.+-.
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSL-SLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EECCCCeEEECCCCCCcccce-eEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 999876543321111111111 222 2366777777764 24778888876533
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.73 E-value=0.99 Score=46.52 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=44.7
Q ss_pred CcEEEEee--CCEEEEEEcCC--ceEE--EEEc-CCCCCeEEEEEcCCC-eEEEEEC-C---------CcEEEEecCCCc
Q 004789 456 GSHLFSAS--GGKISIFSLET--FQTL--ATFA-NPPPIATYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK 517 (730)
Q Consensus 456 ~~~l~s~s--dg~I~vwd~~t--~~~~--~~~~-~~~~~v~~i~~spdg-~l~sgs~-d---------g~I~iwd~~~~~ 517 (730)
+..++.|+ ...+.+||+.+ .+.. ..+. .......++.+ ++ .++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 66666666 46899999864 3222 2222 11112222222 56 6666665 2 468999988764
Q ss_pred eEEEEcC-C-CCCeEEEEEeCCCCEEEEEeCC
Q 004789 518 TKAKLKG-H-QNRITCLAYSLSLNVLVSSGAD 547 (730)
Q Consensus 518 ~~~~~~~-h-~~~V~~l~~spd~~~l~s~s~d 547 (730)
-. .+.. . .......+...+++.++.|+.+
T Consensus 98 W~-~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WV-KLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EE-ECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EE-ECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 22 1211 1 1111111122467777778754
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.68 E-value=1.6 Score=46.90 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=64.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeeccccc--CCCCCCCCeEEEEEecC---CcEEEEE--e--
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPD---QIHLLSI--H-- 596 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~--~h~~~~~~v~~l~~spd---g~~l~~s--~-- 596 (730)
-...+.++|.|+|+++++-...+.|++++..++.......+..... ... .....|+|+|+ +..|+++ .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~---~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQ---NGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSS---CSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCC---CceeEEEECCCcCcCCEEEEEEeccc
Confidence 3467899999999977765544578888765543221111111110 011 46789999996 5566653 2
Q ss_pred ----------cCcEEEEeCCCC-------ceee-eecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 597 ----------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 597 ----------dg~I~iwd~~~~-------~~~~-~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
...|.-|+.... +.+. .+.. ........++|.|||.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 235666665322 1111 1221 12345789999999987776543
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.63 E-value=2 Score=43.37 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=109.7
Q ss_pred CEEEEEEcCCceEEE-EEcCCCCCeEEEEEcCCC-eEEEEEC----CC-------cEEEEecCCCceEEE--EcCCCCCe
Q 004789 465 GKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAK--LKGHQNRI 529 (730)
Q Consensus 465 g~I~vwd~~t~~~~~-~~~~~~~~v~~i~~spdg-~l~sgs~----dg-------~I~iwd~~~~~~~~~--~~~h~~~V 529 (730)
..+..||..+.+... .+........+.+...++ .++.|+. ++ .+.+||..+++-... +.......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 348899998887544 222222233333444566 6677763 11 277889877643221 11111111
Q ss_pred EEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Ee-c---
Q 004789 530 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--- 597 (730)
Q Consensus 530 ~~l~~spd~~~l~s~s~d-------g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~-d--- 597 (730)
+++.. ++..++.|+.+ ..+.+||..+.+-.. +........ . .+++. .+++.++. |. +
T Consensus 104 -~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~-~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 -GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPIKVY----G-HNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp -EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE---ECCCSSCEE----S-CEEEE-ETTEEEEECCEESSSC
T ss_pred -ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE---CCCCCCccc----c-cEEEE-ECCEEEEEcCCCCCCC
Confidence 22222 56677777653 247888988743221 111111111 1 12222 45666555 33 2
Q ss_pred --CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEeecccccCCCCcc
Q 004789 598 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS 670 (730)
Q Consensus 598 --g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 670 (730)
..+.+||+.+.+-...-.. .....-.+++. -++++++.|+.+ ..+.+||+.+.+-... .. .+.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCC-CCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCcccc
Confidence 3489999987654322111 11111112222 367777777654 3577899887653222 11 1111101
Q ss_pred cceeeEEEEEecCCCCEEEEEeCC--------------CcEEEEeCCCCceeeecc
Q 004789 671 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 671 ~~v~~~~v~~sp~~~~~las~s~D--------------g~I~iWd~~~~~~~w~~~ 712 (730)
. . .+.+ ++.+++.|+.+ ..|.+||+.+. .|...
T Consensus 247 ~--~--~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 293 (318)
T 2woz_A 247 I--S--LVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM 293 (318)
T ss_dssp C--E--EEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred e--E--EEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence 1 1 2222 46777887754 34777887654 67765
No 341
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.46 E-value=0.0091 Score=47.37 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcc
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFF 44 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 44 (730)
..||..||-.||.|.||..||-+|+.||++.-
T Consensus 5 sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 5 SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 88999999999999999999999999999876
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.39 E-value=0.48 Score=49.12 Aligned_cols=107 Identities=8% Similarity=-0.059 Sum_probs=59.0
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecc---cccCCCCCCCCeEEEEEecC---CcEEEEE--e--
Q 004789 527 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPD---QIHLLSI--H-- 596 (730)
Q Consensus 527 ~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~---~~~~h~~~~~~v~~l~~spd---g~~l~~s--~-- 596 (730)
...+.|+|.|+|+.|+++...|.|++++... ... ..+.. ...... .....++++|+ +..|+++ .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~--~~~~~~~~v~~~g~---~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS--APLSGVPDVWAHGQ---GGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC--CCCBSCCCCCCSTT---CSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee--eEecCCcccccCCC---CCceeEEECCCCCCCCEEEEEEeCCC
Confidence 3578999999998334455679999998643 111 11111 111111 45789999996 5555553 2
Q ss_pred -----cCcEEEEeCCCC--c--eeeee-cCC----CCCCCeEEEEEecCCCEEEEEE
Q 004789 597 -----EGQIDVYEAPTL--N--HTSQL-VPD----KMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 597 -----dg~I~iwd~~~~--~--~~~~~-~~~----~h~~~v~~~~~spdg~~l~sgs 639 (730)
...|..|++... . ....+ ... ........++|.|||.+.++.+
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 235777776432 1 11111 110 1112245799999996555543
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.20 E-value=0.15 Score=48.43 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=80.8
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEecCCCce------EEEE-c-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 004789 487 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------KAKL-K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~------~~~~-~-~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~ 557 (730)
.+.+++|+|+| +.++ .+|.++-.+..+... -..+ . +-.. -.++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 56699999988 4444 677877777655221 1111 1 1111 468899999987776 569888777633
Q ss_pred Cceec----ceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCcee-----eeecCCCCCCCeEEEEE
Q 004789 558 WKKLC----SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT-----SQLVPDKMDLPITYATY 628 (730)
Q Consensus 558 ~~~~~----~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~-----~~~~~~~h~~~v~~~~~ 628 (730)
..... ...+. ..+- ..+..|.|.|+|...++. |+.++-....+.... .+......-.....+.|
T Consensus 117 ~~~~~Wl~~a~~vg--~~gw----~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 117 SDTDNWIARATEVG--SGGW----SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp STTCCHHHHSEEEE--CSSG----GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCCCceeccccEec--cCCC----CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 11100 01111 0111 357899999999988888 888654433322100 11111111223344667
Q ss_pred ecCCCEEEEEEcCCeE
Q 004789 629 SCDGKCIYVSCKSGHV 644 (730)
Q Consensus 629 spdg~~l~sgs~dg~I 644 (730)
.++|.+.++. +|.+
T Consensus 190 ~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 190 SSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CTTSCEEEEE--TTEE
T ss_pred CCCCcEEEEe--CCeE
Confidence 7887766555 6644
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.12 E-value=4.3 Score=43.43 Aligned_cols=99 Identities=11% Similarity=0.016 Sum_probs=58.5
Q ss_pred CCeeEEEEe--CcEEEEeeC-CEEEEEEcCCceEE--EEEcC------CCCCeEEEEEcCC----CeEEEEEC-------
Q 004789 447 DSISCFALR--GSHLFSASG-GKISIFSLETFQTL--ATFAN------PPPIATYFILLPQ----DLFAFGFD------- 504 (730)
Q Consensus 447 ~~V~~l~~s--~~~l~s~sd-g~I~vwd~~t~~~~--~~~~~------~~~~v~~i~~spd----g~l~sgs~------- 504 (730)
...+.|+|. |+++++-.. +.|++++..++... ..+.. .......++|+|+ +.|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 355689998 766666555 57999987655442 23321 2456779999995 44433332
Q ss_pred ------CCcEEEEecCCC-------ceE-EEEcC-CCCCeEEEEEeCCCCEEEEEe
Q 004789 505 ------DSSILVHCPCTK-------KTK-AKLKG-HQNRITCLAYSLSLNVLVSSG 545 (730)
Q Consensus 505 ------dg~I~iwd~~~~-------~~~-~~~~~-h~~~V~~l~~spd~~~l~s~s 545 (730)
...|.-++...+ +.+ ..+.. .......|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665432 111 12221 123478999999998777654
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.04 E-value=3.3 Score=41.64 Aligned_cols=136 Identities=7% Similarity=-0.005 Sum_probs=78.2
Q ss_pred eCcEEEEee-----CCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEecCCCceEEEEcCCCC
Q 004789 455 RGSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKGHQN 527 (730)
Q Consensus 455 s~~~l~s~s-----dg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~~ 527 (730)
.+++|+-.. ...|...++.... ...+..+.. .++++++ .|+-.+. ...|.+.++..+.....+.+
T Consensus 114 ~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--- 185 (302)
T 3s25_A 114 IGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--- 185 (302)
T ss_dssp ETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---
T ss_pred eCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---
Confidence 377766553 3567777776433 344443332 3567788 6665554 56899999876654433332
Q ss_pred CeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe---cCcEEE
Q 004789 528 RITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDV 602 (730)
Q Consensus 528 ~V~~l~~spd~~~l~s~s~d--g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~---dg~I~i 602 (730)
... ..+.|++.+|+....+ ..|..-++.+... .. + .. ..+ ..|+|++.+|+.+. .+.|..
T Consensus 186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---~~---L-t~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---VV---L-TE-----ANI--EHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC---EE---C-SC-----SCE--EEEEEETTEEEEEECSSSCEEEE
T ss_pred Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe---EE---E-eC-----CCc--ceEEECCCEEEEEECCCCcEEEE
Confidence 222 3466999988876544 3566667766321 11 1 11 233 34888898887642 356777
Q ss_pred EeCCCCceeeee
Q 004789 603 YEAPTLNHTSQL 614 (730)
Q Consensus 603 wd~~~~~~~~~~ 614 (730)
.++. |...+.+
T Consensus 251 ~~~D-G~~r~~l 261 (302)
T 3s25_A 251 VKND-GTGFKEL 261 (302)
T ss_dssp EETT-SCCCEEE
T ss_pred EECC-CCccEEe
Confidence 7774 4333344
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.95 E-value=2.4 Score=42.75 Aligned_cols=175 Identities=9% Similarity=0.033 Sum_probs=85.8
Q ss_pred EEEEEcCCceEEEE--EcCCCCCeEEEEEcCCC-eEEEEECC-------CcEEEEecCCCceEEEEcCCCCC-e-EEEEE
Q 004789 467 ISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTKAKLKGHQNR-I-TCLAY 534 (730)
Q Consensus 467 I~vwd~~t~~~~~~--~~~~~~~v~~i~~spdg-~l~sgs~d-------g~I~iwd~~~~~~~~~~~~h~~~-V-~~l~~ 534 (730)
+.+||..+.+.... +.........+.+ ++ .++.|+.+ ..+.+||+.+.+-.. +.....+ . .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEE
Confidence 77889887765432 1111112222222 56 66666653 258889988764322 2111111 1 12222
Q ss_pred eCCCCEEEEEeC------CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 004789 535 SLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 602 (730)
Q Consensus 535 spd~~~l~s~s~------dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d-----g~I~i 602 (730)
.+++.++.|+. -..+.+||+.+.+-. .+........ . .+++.. +++.++. |.+ ..+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~----~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKTPRS----M-FGVAIH-KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSSCCB----S-CEEEEE-TTEEEEEEEEETTEEEEEEEE
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCCCcc----c-ceEEEE-CCEEEEEcCcCCCCccceEEE
Confidence 35666666654 235899999885322 1221222111 1 122222 5555555 432 34789
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCceEEE
Q 004789 603 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRC 656 (730)
Q Consensus 603 wd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d--------------g~I~iwd~~~~~~~~ 656 (730)
||+.+.+-...-........ .+++ ..++++++.|+.+ ..+.+||+.+.+-..
T Consensus 227 yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 227 FDLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 99987654322111111111 1222 3456777777654 457888988765433
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.88 E-value=0.41 Score=45.46 Aligned_cols=139 Identities=9% Similarity=-0.003 Sum_probs=80.4
Q ss_pred eEEEEECCCcEEEEecCCCc------eEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec----ceee
Q 004789 498 LFAFGFDDSSILVHCPCTKK------TKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----SKFL 566 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~~~------~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~----~~~i 566 (730)
.|++...| +|+.=...++. ....+-. --..+..++|+|+|.+.++ .+|.++-.+..+..... ...+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 56666777 76666555443 1222221 1246779999999986665 67777666654421110 0111
Q ss_pred cccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee-----eecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 567 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS-----QLVPDKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 567 ~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
- ..+- ..-.++.|.|+|.+.++ .||.|+-++-.+...-. .......-..+..+.|.|+|.+.++. |
T Consensus 83 G--~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 83 G--NGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp E--CSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred c--cccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence 1 0011 12368999999988888 78999888764322110 11110112467899999999866666 8
Q ss_pred CeEEEEE
Q 004789 642 GHVKVFD 648 (730)
Q Consensus 642 g~I~iwd 648 (730)
+.++-+.
T Consensus 154 g~lyr~~ 160 (236)
T 1tl2_A 154 QQFYKAL 160 (236)
T ss_dssp TEEEEEC
T ss_pred CcEEecC
Confidence 8865433
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.52 E-value=2.4 Score=45.87 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=134.3
Q ss_pred EEEEeCCCcEEEeecCCCccccc-cccccceeeEecC--CCCeeEe---ecccC-CCCCCeeEEEEe-----CcEEEEee
Q 004789 396 LVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQP--SSKLVMT---NDIAA-DPKDSISCFALR-----GSHLFSAS 463 (730)
Q Consensus 396 L~s~s~dg~I~iWd~~~~~~~~~-~~~~~~~~~i~~~--~~~~~~~---~~~~~-~h~~~V~~l~~s-----~~~l~s~s 463 (730)
+.||+..|.|+|+-+.+.+.... ..-...+-.-|-. ++.+++. .+..+ .|- ..+++. |+||+...
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HH---p~~S~tdg~yDGrylfiNd 149 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHH---PHISMTDGKYDGKYLFIND 149 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCC---CEEEEETTEEEEEEEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCC---CcccccCCeeeeEEEEEec
Confidence 66778889999999998887543 1000000000110 0001110 00000 111 134444 78888888
Q ss_pred --CCEEEEEEcCCceEEEEEcCC-CCCeEEEEEc--CCC-eEEEEECC-------CcE---------EE---EecCCCce
Q 004789 464 --GGKISIFSLETFQTLATFANP-PPIATYFILL--PQD-LFAFGFDD-------SSI---------LV---HCPCTKKT 518 (730)
Q Consensus 464 --dg~I~vwd~~t~~~~~~~~~~-~~~v~~i~~s--pdg-~l~sgs~d-------g~I---------~i---wd~~~~~~ 518 (730)
+..|-..++...++.+.+.-+ ...+..+.+- |+- +++.++.. |.. .+ .|..+.+.
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 689999999999988877644 4578888886 555 77776642 221 01 12222222
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceecce--eecccccCCC
Q 004789 519 KAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WKKLCSK--FLHSFQTGLV 574 (730)
Q Consensus 519 ~~~~~~h~~~V~~l~~spd~~~l~s~s~dg---------------~I~vwd~~~-------~~~~~~~--~i~~~~~~h~ 574 (730)
...+. -.+....+...++|.+.++.+... .+.++|+.. ++..... .+. +..+..
T Consensus 230 ~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~-ViD~~~ 307 (638)
T 3sbq_A 230 AFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP-VLDGRK 307 (638)
T ss_dssp EEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC-EEECSC
T ss_pred EEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee-EEcccc
Confidence 11111 011222344566777776654321 255555421 1100000 011 000000
Q ss_pred ------------CCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce-------------eeeecCCCCCCCeEEEE
Q 004789 575 ------------PETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH-------------TSQLVPDKMDLPITYAT 627 (730)
Q Consensus 575 ------------~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~~~-------------~~~~~~~~h~~~v~~~~ 627 (730)
|-......+.++|||++++++ -+.++.++|++.... ..... -.-.....+
T Consensus 308 ~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e---~GlGPlHt~ 384 (638)
T 3sbq_A 308 KDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE---LGLGPLHTT 384 (638)
T ss_dssp BTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB---CCSCEEEEE
T ss_pred ccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc---CCCcccEEE
Confidence 000234568899999999994 678899999874211 11221 256678899
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCc
Q 004789 628 YSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 628 ~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
|.++|.-..+-.-|..|.-|++...
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ECCCCceEeeeeecceEEEEeccHH
Confidence 9999955555568999999998753
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.46 E-value=7 Score=39.19 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=93.3
Q ss_pred EEEEEEcCCceEEEEEcCCCCCeEEEEEcCCC-eEEEEE----CCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCE
Q 004789 466 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 540 (730)
Q Consensus 466 ~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg-~l~sgs----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~ 540 (730)
.|+..++..++... +.... +..|++++ .|+-.. .+..|+..++.... ...+..+.. .+++++++.
T Consensus 89 ~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 89 SLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE
T ss_pred eEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE
Confidence 57777777664333 22111 33677788 666555 33467777776433 344443432 456788888
Q ss_pred EEEEeC-CCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEE-e-c-CcEEEEeCCCCceeeeecC
Q 004789 541 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E-GQIDVYEAPTLNHTSQLVP 616 (730)
Q Consensus 541 l~s~s~-dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s-~-d-g~I~iwd~~~~~~~~~~~~ 616 (730)
|+..+. ...|.+.++.++.. .. +..+ .. ...++|++.+|+-. . + ..|..-++.... ...+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~---~~---l~~~------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSE---AL---FYDC------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEE---EE---EECS------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-
T ss_pred EEEEeCCCceEEEEECCCCCE---EE---EeCC------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-
Confidence 887665 57888888877432 11 1222 22 23467999998874 2 2 367777775444 33443
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCce
Q 004789 617 DKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLE 653 (730)
Q Consensus 617 ~~h~~~v~~~~~spdg~~l~sgs~--dg~I~iwd~~~~~ 653 (730)
...+ ..|+|++.+|+.++. .+.|..-+++...
T Consensus 224 ---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 224 ---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp ---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 2233 347888998886643 3667777776544
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.44 E-value=3.7 Score=46.76 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=102.3
Q ss_pred CcEEEEee-C----CEEEEEEcCCceEEEEE-c-----CCCCC-eEEEEEcC-CC-eEEEEECCC------cEEEEecCC
Q 004789 456 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPPI-ATYFILLP-QD-LFAFGFDDS------SILVHCPCT 515 (730)
Q Consensus 456 ~~~l~s~s-d----g~I~vwd~~t~~~~~~~-~-----~~~~~-v~~i~~sp-dg-~l~sgs~dg------~I~iwd~~~ 515 (730)
+..++.|+ + ..+.+||..+++....- . ..... -.+++..+ ++ .++.|+.++ .+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 66666666 3 46889999887654433 1 11111 12333333 66 777776543 588999887
Q ss_pred CceEE--EEcCCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecC-Cc
Q 004789 516 KKTKA--KLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QI 590 (730)
Q Consensus 516 ~~~~~--~~~~h~~~V~~l~~spd~~~l~s~s~dg--~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spd-g~ 590 (730)
.+-.. .+...... .+++...++..++.|+.++ .+.+||..+..-.........+... ....++.+..+ ++
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQ 552 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCE
Confidence 53221 11111111 2233324788888887654 6899999885422111100011111 12234566655 55
Q ss_pred EEEEE-e--c-----CcEEEEeCCCCce-----eeeecC-CCCCCCeEEEEEecCCCEEEEEEcC--------CeEEEEE
Q 004789 591 HLLSI-H--E-----GQIDVYEAPTLNH-----TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--------GHVKVFD 648 (730)
Q Consensus 591 ~l~~s-~--d-----g~I~iwd~~~~~~-----~~~~~~-~~h~~~v~~~~~spdg~~l~sgs~d--------g~I~iwd 648 (730)
.++.| . + +.+.+||+.+... ...+.. ......-.+++...++++++.|+.+ ..|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 55554 3 2 3489999987761 112211 0001111233333447777777743 5699999
Q ss_pred CCCceEE
Q 004789 649 TSTLELR 655 (730)
Q Consensus 649 ~~~~~~~ 655 (730)
..+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9987644
No 351
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.34 E-value=8.1 Score=39.55 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=121.7
Q ss_pred CCCeeEEEEe--CcEEEEee-CCEEEEEEcCCceEE--EEEc----CCCCCeEEEEEcCC----CeEEEE---ECCCcEE
Q 004789 446 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL--ATFA----NPPPIATYFILLPQ----DLFAFG---FDDSSIL 509 (730)
Q Consensus 446 ~~~V~~l~~s--~~~l~s~s-dg~I~vwd~~t~~~~--~~~~----~~~~~v~~i~~spd----g~l~sg---s~dg~I~ 509 (730)
-...+.|+|. |.++++-. .|.|++++..+++.. ..+. ........++++|+ +.|++. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3456789998 77777777 899999987666542 2221 22456789999996 444332 2445666
Q ss_pred EEecCCC----------ce-EEEEcC-CCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCceecce
Q 004789 510 VHCPCTK----------KT-KAKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK 564 (730)
Q Consensus 510 iwd~~~~----------~~-~~~~~~-h~~~V~~l~~spd~~~l~s~s~-------------dg~I~vwd~~~~~~~~~~ 564 (730)
-|.+..+ +. +..+.. .......|+|.|||.+.++.+. .|.|.-.+.... .....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCCC
Confidence 6765541 11 122321 1123457999999987776542 245555555431 00000
Q ss_pred e---ecccccCCCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCce------------------eeeecCCCCCC
Q 004789 565 F---LHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNH------------------TSQLVPDKMDL 621 (730)
Q Consensus 565 ~---i~~~~~~h~~~~~~v~~l~~spdg~~l~~--s~dg~I~iwd~~~~~~------------------~~~~~~~~h~~ 621 (730)
+ ......++. ....++|+|+|...++ +.++.=.|.-+..+.. +..+. .+..
T Consensus 190 Pf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~~ 263 (347)
T 3das_A 190 PFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDEA 263 (347)
T ss_dssp SSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTTC
T ss_pred CCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCCC
Confidence 0 011233553 4668999999887776 3443222222222211 11111 0113
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEe
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 692 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s 692 (730)
....++|. +|..+...-..+.|....+..+..+. ....+. .+. ...+. .|+..| ||.++++.+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~--~~e~~l-~~~-~gR~~--dv~~~p-DG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA--DPQAFL-EGE-YGRLR--TVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS--CCEEES-TTT-SSCEE--EEEEEE-TTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceec--ceEEee-cCC-CCCcc--EEEECC-CCcEEEEEc
Confidence 45667775 45555555555666666665443210 000111 121 23455 888888 777655543
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.95 E-value=3.4 Score=41.04 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=117.1
Q ss_pred CCeeEEEEe-CcEEEEeeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCC
Q 004789 447 DSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH 525 (730)
Q Consensus 447 ~~V~~l~~s-~~~l~s~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h 525 (730)
..|..++.. ...++.. ||.|+.|-....-.+..-......|..++......++. . ||.|+.|-....-.+..-..-
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 356677766 4445554 99999998654221111011123566677654433333 4 899999986542111110112
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 004789 526 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 605 (730)
Q Consensus 526 ~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~ 605 (730)
...|..++...+. .+.-+ ||.|+.|-....-+. .+. ... . ..|..++...+. .++.. ||.++.|-.
T Consensus 101 ~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gql---g~~-~~~--~---~~i~~i~~G~~~-~~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 101 RSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQT---TVP-AEA--Q---SGVTALDGGVYT-ALAVK-NGGVIAWGD 166 (282)
T ss_dssp SSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTT---SCC-GGG--G---SSEEEEEECSSE-EEEEE-TTEEEEEEC
T ss_pred CCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcC---CCC-ccC--C---CCeEEEEcccCE-EEEEE-CCEEEEecC
Confidence 3468888877553 33344 899999976552111 111 011 1 357777665433 22234 899999976
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCC
Q 004789 606 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 685 (730)
Q Consensus 606 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~ 685 (730)
.....+..-. .....|..++...+- .++. .||.|+.|-......+.. ... . ...|. .++-.. .
T Consensus 167 n~~gqlg~p~--~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~-p~~-----~--~~~v~--~i~~G~--~ 229 (282)
T 3qhy_B 167 NYFGQTTVPA--EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV-PTE-----A--LSGVS--AIASGE--W 229 (282)
T ss_dssp CTTSTTSCCG--GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC-CGG-----G--GSSCC--EEEECS--S
T ss_pred CCCCCCCCce--ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC-Ccc-----c--CCCce--EEEcCC--C
Confidence 5432221110 113567777765432 2333 599999997654321111 000 0 12355 555433 2
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004789 686 NRIALGLTNGRVHVIEPLES 705 (730)
Q Consensus 686 ~~las~s~Dg~I~iWd~~~~ 705 (730)
..++.. ||.|..|--...
T Consensus 230 h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp CEEEEE--TTEEEEESTTCC
T ss_pred EEEEEE--CCEEEEecCCCC
Confidence 344443 999999987654
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.13 E-value=12 Score=42.47 Aligned_cols=199 Identities=11% Similarity=0.019 Sum_probs=101.6
Q ss_pred CCC-eEEEEECC----CcEEEEecCCCceEEEE-c------CCCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEc
Q 004789 495 PQD-LFAFGFDD----SSILVHCPCTKKTKAKL-K------GHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDA 555 (730)
Q Consensus 495 pdg-~l~sgs~d----g~I~iwd~~~~~~~~~~-~------~h~~~V~~l~~sp-d~~~l~s~s~d------g~I~vwd~ 555 (730)
-++ .++.|+.+ ..+.+||..+++-...- . .....-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 344 66666643 46889998877533222 1 0111112333443 67777777754 35788999
Q ss_pred CCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-Eec--CcEEEEeCCCCceeeeec---CCCCCCCeEEEEEe
Q 004789 556 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYS 629 (730)
Q Consensus 556 ~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~d--g~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~s 629 (730)
.+.+-.. +....... .-.+++...+++.++. |.+ +.+.+||..+..-...-. ..........+.+.
T Consensus 476 ~t~~W~~---~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREWSM---IKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEEEE---CCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcEEE---CCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 8843221 11112211 1123333246777666 433 279999998765432211 00012222335555
Q ss_pred cC-CCEEEEEEcC-------CeEEEEECCCceE-----EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCC--
Q 004789 630 CD-GKCIYVSCKS-------GHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-- 694 (730)
Q Consensus 630 pd-g~~l~sgs~d-------g~I~iwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~D-- 694 (730)
.+ +++++.|+.+ +.+.+||+.+..- -..+...... +. ....++.+. ++.+++.||.+
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R----~~~~~~~~~--~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QR----YGSQIKYIT--PRKLLIVGGTSPS 619 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CC----BSCEEEEEE--TTEEEEECCBCSS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--Cc----ccceEEEeC--CCEEEEECCccCC
Confidence 55 6677777652 4689999988761 1111111011 11 011123332 26788888743
Q ss_pred ------CcEEEEeCCCCceeeec
Q 004789 695 ------GRVHVIEPLESEVEWGK 711 (730)
Q Consensus 695 ------g~I~iWd~~~~~~~w~~ 711 (730)
..|.+||+.+. .|..
T Consensus 620 ~~~~~~~~v~~yd~~t~--~W~~ 640 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE--TLTS 640 (695)
T ss_dssp CCCCTTTSEEEEETTTT--EEEE
T ss_pred CCCCCCCeEEEEECCCC--eEEE
Confidence 45889998765 5764
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.46 E-value=11 Score=37.20 Aligned_cols=222 Identities=10% Similarity=-0.023 Sum_probs=116.4
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEeecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-CcEEEE
Q 004789 383 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFS 461 (730)
Q Consensus 383 ~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~l~s 461 (730)
.|..++..... .+... ||.|..|-......... .. .....|..++.. ...++.
T Consensus 25 ~i~~ia~G~~h--~~~l~-~G~v~~wG~n~~Gqlg~-----------------p~------~~~~~i~~ia~G~~hs~~l 78 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLALK-GGKVLGWGANLNGQLTM-----------------PA------ATQSGVDAIAAGNYHSLAL 78 (282)
T ss_dssp SCCEEEECSSE--EEEEE-TTEEEEEECCSSSTTSC-----------------CG------GGGSCCCEEEECSSEEEEE
T ss_pred CCcEEEeCCCe--EEEEE-CCEEEEEeCCCCCCCCC-----------------Cc------cCCCCEEEEEeCCCEEEEE
Confidence 46666655443 23335 89999987554322000 00 012356666666 444555
Q ss_pred eeCCEEEEEEcCCceEEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEE
Q 004789 462 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 541 (730)
Q Consensus 462 ~sdg~I~vwd~~t~~~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l 541 (730)
.||.|+.|-....-.+..-..-...|..++...+. .+.-. ||.|+.|-....-.+..-......|..++...+..
T Consensus 79 -~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-- 153 (282)
T 3qhy_B 79 -KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-- 153 (282)
T ss_dssp -ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--
T ss_pred -ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--
Confidence 48999999865421111101112467777766553 33334 89999997654211111111234677777654432
Q ss_pred EEEeCCCcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCC
Q 004789 542 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 621 (730)
Q Consensus 542 ~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h~~ 621 (730)
+.-. ||.|+.|-....-+. ..+.. . . ..|..++...+. .++. .+|.++.|-......+..-. ....
T Consensus 154 ~~l~-~G~v~~wG~n~~gql-g~p~~---~--~---~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~--~~~~ 219 (282)
T 3qhy_B 154 LAVK-NGGVIAWGDNYFGQT-TVPAE---A--Q---SGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPT--EALS 219 (282)
T ss_dssp EEEE-TTEEEEEECCTTSTT-SCCGG---G--G---SSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCG--GGGS
T ss_pred EEEE-CCEEEEecCCCCCCC-CCcee---c--C---CCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCc--ccCC
Confidence 2233 799999976542111 11111 1 1 357777766543 3444 79999999765432221111 1134
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004789 622 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL 652 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~ 652 (730)
.|..++...+.. ++ -. ||.|+.|-....
T Consensus 220 ~v~~i~~G~~h~-~a-l~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 220 GVSAIASGEWYS-LA-LK-NGKVIAWGSSRT 247 (282)
T ss_dssp SCCEEEECSSCE-EE-EE-TTEEEEESTTCC
T ss_pred CceEEEcCCCEE-EE-EE-CCEEEEecCCCC
Confidence 566776554433 33 33 999999976653
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.66 E-value=4.4 Score=42.06 Aligned_cols=152 Identities=12% Similarity=0.060 Sum_probs=79.3
Q ss_pred cEEEEEcCCC--ceecceeecccccCCCCCCCCeEEEEEe---cC----CcEEEEE--ecCcEEEEeCCCCceeeeec--
Q 004789 549 QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV-- 615 (730)
Q Consensus 549 ~I~vwd~~~~--~~~~~~~i~~~~~~h~~~~~~v~~l~~s---pd----g~~l~~s--~dg~I~iwd~~~~~~~~~~~-- 615 (730)
.|.+||+.+. +......+..-..... ..+..+++. |+ +.+++.+ ..+.|.+||+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~---S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKP---TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCG---GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccC---CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 4566777765 4443333321111111 467788888 22 3444544 45779999999887665442
Q ss_pred --CC--------CC----CCCeEEEEEecC----CCEEEEEEcCCeEEEEECCCceEEEEeecccccCCCCcccceeeEE
Q 004789 616 --PD--------KM----DLPITYATYSCD----GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 677 (730)
Q Consensus 616 --~~--------~h----~~~v~~~~~spd----g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 677 (730)
.. +. ...+..+++||+ ++.|+-....+. ++|.+.+.-+...-....+...|.....-....
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 11 00 246788888887 677776665542 334432211000000000000121110012225
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 678 IAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 678 v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
.+..+.+|.++++--..+.|..|+...
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 566543677777877888999999875
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.19 E-value=16 Score=38.97 Aligned_cols=112 Identities=12% Similarity=-0.026 Sum_probs=62.0
Q ss_pred CCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCcee-cceeecccc-cC----CCCCCCCeEEEEEecC---CcEEEE--
Q 004789 527 NRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKL-CSKFLHSFQ-TG----LVPETTIVNHIQFHPD---QIHLLS-- 594 (730)
Q Consensus 527 ~~V~~l~~spd~~-~l~s~s~dg~I~vwd~~~~~~~-~~~~i~~~~-~~----h~~~~~~v~~l~~spd---g~~l~~-- 594 (730)
...+.|+|.|||. .|+++...|.|++++....... ....+.... .+ .. .....|+|+|+ ..+|++
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e---~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDE---RGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCC---CSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCC---CcceeeEeCCCCcCCCEEEEEE
Confidence 4567999999995 4445567899999975432110 001111111 11 12 46789999996 334443
Q ss_pred Ee--c----------CcEEEEeCCC----------CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 004789 595 IH--E----------GQIDVYEAPT----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 641 (730)
Q Consensus 595 s~--d----------g~I~iwd~~~----------~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~d 641 (730)
+. + ..|.-|.+.. .+.+..+...........++|.|||.+.++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 32 1 1455566542 1223333211224456889999999876665543
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.80 E-value=4.5 Score=43.84 Aligned_cols=139 Identities=12% Similarity=0.016 Sum_probs=82.4
Q ss_pred cEEEEecCC----CceEEEEcCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCcee-------c-ceeecccccCC
Q 004789 507 SILVHCPCT----KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKL-------C-SKFLHSFQTGL 573 (730)
Q Consensus 507 ~I~iwd~~~----~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~dg~I~vwd~~~~~~~-------~-~~~i~~~~~~h 573 (730)
.|.+.|.+. +..+..+-.-......+.++|||++++.++ .+.++.++|+..-... . .........|
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 467777765 322222222334556788999999988766 4789999999852110 0 0001112222
Q ss_pred CCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCC----------ceeeeecCCCCCCCeEEEEE------ecCCCEE
Q 004789 574 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL----------NHTSQLVPDKMDLPITYATY------SCDGKCI 635 (730)
Q Consensus 574 ~~~~~~v~~l~~spdg~~l~~s--~dg~I~iwd~~~~----------~~~~~~~~~~h~~~v~~~~~------spdg~~l 635 (730)
-.....+|.++| ..+++ -|..|.-|++... ..+..+.. ...+-.+.- .|||++|
T Consensus 378 ----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv---~YqpGH~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 378 ----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV---HYQPGHLHASLCETNEADGKWL 449 (638)
T ss_dssp ----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC---SSCEEEEEETTTTSTTCCSCEE
T ss_pred ----CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc---ccCCcccccCCCccCCCCccEE
Confidence 356789999999 55554 7899999998642 23334433 222333333 3789999
Q ss_pred EEEEc---CC----------eEEEEECCCceE
Q 004789 636 YVSCK---SG----------HVKVFDTSTLEL 654 (730)
Q Consensus 636 ~sgs~---dg----------~I~iwd~~~~~~ 654 (730)
++... |. +-.+.|+...++
T Consensus 450 v~lnK~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 450 VALSKFSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp EEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred EEecccccccCcCCCCCCCCcceeEecCCCce
Confidence 98764 32 336777765443
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.37 E-value=48 Score=34.10 Aligned_cols=203 Identities=9% Similarity=-0.041 Sum_probs=92.3
Q ss_pred eEEEEECCCcEEEEecCC-CceEEEE--cCCCCCeEEEEEeC--CCCEEEEEeCCC----cEEEEEcCCCceecceeecc
Q 004789 498 LFAFGFDDSSILVHCPCT-KKTKAKL--KGHQNRITCLAYSL--SLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHS 568 (730)
Q Consensus 498 ~l~sgs~dg~I~iwd~~~-~~~~~~~--~~h~~~V~~l~~sp--d~~~l~s~s~dg----~I~vwd~~~~~~~~~~~i~~ 568 (730)
.|.+|+..| +.+++... +..-..+ ......|.+|++.| ++... +++..| .|...+ +.++. ...+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~t--W~~~~~ 98 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGN--WTEATR 98 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSC--CEECSB
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCC--ceECCc
Confidence 677787776 55555432 2222221 12345699999998 44444 444444 343332 22111 111110
Q ss_pred c--ccCCCC-----CCCCeEEEEEec-C-CcEEEE-EecCcEEEEeCCCCceeeeecC-----------------CCCCC
Q 004789 569 F--QTGLVP-----ETTIVNHIQFHP-D-QIHLLS-IHEGQIDVYEAPTLNHTSQLVP-----------------DKMDL 621 (730)
Q Consensus 569 ~--~~~h~~-----~~~~v~~l~~sp-d-g~~l~~-s~dg~I~iwd~~~~~~~~~~~~-----------------~~h~~ 621 (730)
. ...... ....|.++++.| + ...+.+ +..+.|...+- .++.-..+.. .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 0 000000 002577899987 2 344444 56666665542 2222222210 01134
Q ss_pred CeEEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEeec---ccccCCCC--cccceeeEEEEEecCCCCEEEEEeCCC
Q 004789 622 PITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINL---TAYAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 622 ~v~~~~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~~~~gh--~~~~v~~~~v~~sp~~~~~las~s~Dg 695 (730)
.+.++.++|. ...|+.+..++.|+..+ +.|+.-..+.. ..+.+... ....+. +++++|.++..|..++..|
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~--~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPH--CVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEE--EEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCccee--EEEECCCCCCEEEEEcCCe
Confidence 5788999873 44556665555554443 22322122210 00111000 012355 8888885556777776554
Q ss_pred cEEEEeCCCCceeeecc
Q 004789 696 RVHVIEPLESEVEWGKL 712 (730)
Q Consensus 696 ~I~iWd~~~~~~~w~~~ 712 (730)
||....+-..|...
T Consensus 255 ---l~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 255 ---IYRMDRREGVWKRI 268 (394)
T ss_dssp ---EEEEETTTTEEECG
T ss_pred ---EEEeCCCCCcceEC
Confidence 34344444556554
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.02 E-value=47 Score=32.50 Aligned_cols=186 Identities=10% Similarity=0.046 Sum_probs=100.4
Q ss_pred eEEEEECCCcEEEE---ecCCCceEEEEcCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCceecceeec--ccc
Q 004789 498 LFAFGFDDSSILVH---CPCTKKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQ 570 (730)
Q Consensus 498 ~l~sgs~dg~I~iw---d~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~--~~~ 570 (730)
.|+.-+..|.++.- ++..+.....+. ....|.++.. + +...++..+.+|.++-..+.... .....+. .+.
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 55555666765543 332221100132 3456666644 4 46789999999999998876532 1111111 022
Q ss_pred cCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce-------eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 004789 571 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH-------TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 642 (730)
Q Consensus 571 ~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg 642 (730)
.+ +.+..+........++. +..|.+..++...-.. +.-+... ....|..+...+++..++..+..|
T Consensus 114 eg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 EG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp TT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTS
T ss_pred CC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 22 45666555554445554 7888887776532111 1112111 246677776666677888889999
Q ss_pred eEEEEECCCceE-------EEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEE--EeCCC
Q 004789 643 HVKVFDTSTLEL-------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV--IEPLE 704 (730)
Q Consensus 643 ~I~iwd~~~~~~-------~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~i--Wd~~~ 704 (730)
.++...+..-.. +..+. . .+.+. .+.... +...++..+.+|.+.. ++..+
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i~------~---~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVSG------T---KDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECCC------S---SSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred cEEEeEHHHcccCCCCCcceEEEc------C---CCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 998887643211 11111 1 22233 332222 3456777778888877 77654
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.75 E-value=92 Score=35.14 Aligned_cols=179 Identities=14% Similarity=0.034 Sum_probs=91.3
Q ss_pred CEEEEEEcCCce--EEEEEcCCCCCe-EEEEEcCCC-e-----EEEEECC---CcEEEEecCC--CceEEEEcCCCCCeE
Q 004789 465 GKISIFSLETFQ--TLATFANPPPIA-TYFILLPQD-L-----FAFGFDD---SSILVHCPCT--KKTKAKLKGHQNRIT 530 (730)
Q Consensus 465 g~I~vwd~~t~~--~~~~~~~~~~~v-~~i~~spdg-~-----l~sgs~d---g~I~iwd~~~--~~~~~~~~~h~~~V~ 530 (730)
..|+.|.+-|.. -...+.+....+ .....++++ . +++.+.+ ..+++.|... ++ +..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--
Confidence 478888886642 333444433333 345556666 3 3443322 3567777653 33 2333222221
Q ss_pred EEEEeCCCCEEEEE----------eCCCcEEEEEcCCCce-----ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-
Q 004789 531 CLAYSLSLNVLVSS----------GADAQLCVWDAVGWKK-----LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 594 (730)
Q Consensus 531 ~l~~spd~~~l~s~----------s~dg~I~vwd~~~~~~-----~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~- 594 (730)
.+..+.++.+++.. ...+.|...|+.++.. .....+ +..... ..+..+.+..+ ..+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL--FTPTAN---EVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE--ECCCTT---EEEEEEEECSS-CEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE--ECCCCC---CeEEEEEEECC-EEEEEE
Confidence 22344455554432 1356788999876421 011111 111111 46778888876 34444
Q ss_pred EecC--cEEEEeCCCCc-eeee-ecCCCCCCCeEEEEEecCCCE-EEEEEc---CCeEEEEECCCceE
Q 004789 595 IHEG--QIDVYEAPTLN-HTSQ-LVPDKMDLPITYATYSCDGKC-IYVSCK---SGHVKVFDTSTLEL 654 (730)
Q Consensus 595 s~dg--~I~iwd~~~~~-~~~~-~~~~~h~~~v~~~~~spdg~~-l~sgs~---dg~I~iwd~~~~~~ 654 (730)
..++ .+.++|+.++. .... +.... .+.+.....++++.. +++.+. -+.++.+|+. ++.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 3555 47888876664 2333 32211 345666666677654 444433 3788999987 543
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.18 E-value=75 Score=32.72 Aligned_cols=171 Identities=9% Similarity=0.026 Sum_probs=96.8
Q ss_pred CEEEEEEcCCc--eEEEEEcCC------CCCeEEEEEc---CC----C-eEEEEE-CCCcEEEEecCCCceEEEEcC---
Q 004789 465 GKISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKG--- 524 (730)
Q Consensus 465 g~I~vwd~~t~--~~~~~~~~~------~~~v~~i~~s---pd----g-~l~sgs-~dg~I~iwd~~~~~~~~~~~~--- 524 (730)
-+|.+||+.++ +.++++.-. ...+..+.+. |+ + +++.+. ..+.|.++|+.+++..+.+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46889999999 888887632 3457788887 32 3 444444 466899999999876655421
Q ss_pred -----------C----CCCeEEEEEeCC----CCEEEEEeCCCcEEEEEcCCCceec---ceeecccccCCCCCCCCeEE
Q 004789 525 -----------H----QNRITCLAYSLS----LNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNH 582 (730)
Q Consensus 525 -----------h----~~~V~~l~~spd----~~~l~s~s~dg~I~vwd~~~~~~~~---~~~i~~~~~~h~~~~~~v~~ 582 (730)
. ...|..|+++|+ ++.|......+. ++|.+.+..... ...++ ..|..+..+.-..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~--~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPE--LLGNRGKYNDAIA 279 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCE--EEEECCTTCCEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceE--EeeecCCCCCcce
Confidence 0 136778899987 777777665543 444443211000 11111 0111100022335
Q ss_pred EEEe-cCCcEEEEE-ecCcEEEEeCCC-C---ceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 004789 583 IQFH-PDQIHLLSI-HEGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYSCDGKCIYVS 638 (730)
Q Consensus 583 l~~s-pdg~~l~~s-~dg~I~iwd~~~-~---~~~~~~~~~~h~~~v~~~~~spdg~~l~sg 638 (730)
+++. .+|..+++- ..+.|..|+..+ . +....+.....-..+..+.+..+|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 6675 567666663 778899999865 1 122233222234456777776666544443
No 362
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=72.70 E-value=18 Score=30.31 Aligned_cols=111 Identities=10% Similarity=0.092 Sum_probs=64.0
Q ss_pred cCccchhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhh
Q 004789 8 IDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFF 82 (730)
Q Consensus 8 ~~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 82 (730)
|||+.-+..-.+=..+++...|.++...+++=-.+..+ ...=.-....|+|++|+..+.+.-.+++... .+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHH
Confidence 44443344444445667777788888877664333222 2222334567999999988865533433322 1222
Q ss_pred hhhhhhhHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHh
Q 004789 83 ELRKHKYCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 83 ~i~~q~~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll 127 (730)
.+- .=+...|+.++|+..+++- +.|- +.+....|..||
T Consensus 86 ~lg----~~~~~~~~~~~A~~~~~~al~l~P~---~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKA----ACLVAMREWSKAQRAYEDALQVDPS---NEEAREGVRNCL 125 (126)
T ss_dssp HHH----HHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHC
T ss_pred HHH----HHHHHCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHHhc
Confidence 221 1234678999999999985 4443 566666676665
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.82 E-value=40 Score=35.89 Aligned_cols=108 Identities=7% Similarity=-0.094 Sum_probs=61.0
Q ss_pred CeEEEEEecCCc--EEEEEecCcEEEEeCCCCc---eeeeecC---C----CCCCCeEEEEEecC----CCEEEEEEcC-
Q 004789 579 IVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLN---HTSQLVP---D----KMDLPITYATYSCD----GKCIYVSCKS- 641 (730)
Q Consensus 579 ~v~~l~~spdg~--~l~~s~dg~I~iwd~~~~~---~~~~~~~---~----~h~~~v~~~~~spd----g~~l~sgs~d- 641 (730)
..+.|+|.|+|. ++++...|.|++++..... .+..+.. . ........++|+|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999985 7777788999999753221 1222110 0 11456889999996 4433333321
Q ss_pred -----------CeEEEEECCCc----------eEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCC
Q 004789 642 -----------GHVKVFDTSTL----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 695 (730)
Q Consensus 642 -----------g~I~iwd~~~~----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg 695 (730)
..|.-|.+..+ +.+..+.. ..++|. .. .++|.| |+.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~~H~--g~--~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHRKHL--GG--QLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSSSSC--EE--EEEECT-TSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCCccc--CC--cEeECC-CCcEEEEeCCCC
Confidence 13444655421 22222211 113223 34 899999 888888777644
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.65 E-value=99 Score=31.64 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=113.0
Q ss_pred CcEEEEeeCCEEEEEEcCC-ceEEEEE--cCCCCCeEEEEEcC--CCeEEEEECCC----cEEEEecCCCceEEEEcC--
Q 004789 456 GSHLFSASGGKISIFSLET-FQTLATF--ANPPPIATYFILLP--QDLFAFGFDDS----SILVHCPCTKKTKAKLKG-- 524 (730)
Q Consensus 456 ~~~l~s~sdg~I~vwd~~t-~~~~~~~--~~~~~~v~~i~~sp--dg~l~sgs~dg----~I~iwd~~~~~~~~~~~~-- 524 (730)
...|.+|...-+.+++... +..-..+ ......|.++++.| .+.+.+++..+ .|...+ ..++.-..+..
T Consensus 22 ~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 22 PVMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CCEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CCEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3456666633355555432 2211111 12345789999998 34555555554 444432 23332222211
Q ss_pred ------------CCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCceecceeeccccc-CC-----------CCCCC
Q 004789 525 ------------HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GL-----------VPETT 578 (730)
Q Consensus 525 ------------h~~~V~~l~~spd--~~~l~s~s~dg~I~vwd~~~~~~~~~~~i~~~~~-~h-----------~~~~~ 578 (730)
....|.++++.|. ...+.+++..+.|...+-.... ...+..... .. .....
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~t---W~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGAS---WEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSB---CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCC---eEECcCccCCccccccccccccCCCCCC
Confidence 1124778889872 4556666556655544322211 111110000 00 00003
Q ss_pred CeEEEEEecC-CcEEEE-EecCcEEEEeCCCCceeeeecCCC---C--------CCCeEEEEEecC-CCEEEEEEcCCeE
Q 004789 579 IVNHIQFHPD-QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---M--------DLPITYATYSCD-GKCIYVSCKSGHV 644 (730)
Q Consensus 579 ~v~~l~~spd-g~~l~~-s~dg~I~iwd~~~~~~~~~~~~~~---h--------~~~v~~~~~spd-g~~l~sgs~dg~I 644 (730)
.+.+|.++|. ...+++ ..++.|...+- .++.-..+.... + ...+.++.+.|+ ...|++++..+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5789999883 344444 45555554432 233222221100 0 134888999885 45677776544 5
Q ss_pred EEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCceeeecc
Q 004789 645 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----------NGRVHVIEPLESEVEWGKL 712 (730)
Q Consensus 645 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~-----------Dg~I~iWd~~~~~~~w~~~ 712 (730)
+..+- .++.-..+.. ..+.+. ...+. +++++|.+...+..++. ++...||....+-..|...
T Consensus 256 ~~s~D-~G~tW~~~~~--~l~~~~-~~~~~--~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGD--AMPREV-GDIGF--PIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp EEEET-TTTEEECGGG--GSCTTT-CSCEE--EEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred EEeCC-CCCcceECCC--CCCCCC-ccceE--EEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 54442 2332222211 011110 02234 77887744444444432 3445677777665667654
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.75 E-value=1.4e+02 Score=35.09 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=31.7
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEecCCCceEEEE
Q 004789 487 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 522 (730)
Q Consensus 487 ~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~~~~~~~ 522 (730)
.+.+++..++. ++++-+.|+++++|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 56778888888 9999999999999999999988775
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.28 E-value=22 Score=41.85 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeecc
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 661 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 661 (730)
...+.+++..++..++++-+.|+++++|++.+++++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345677888888899999999999999999999998887643
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=60.69 E-value=1.4e+02 Score=29.87 Aligned_cols=207 Identities=10% Similarity=0.015 Sum_probs=111.1
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEe---ecCCCccccccccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe-
Q 004789 380 FGGRVVRLIYSHSGDFLVALTQTATHKLW---KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 455 (730)
Q Consensus 380 h~~~V~~v~fspdg~~L~s~s~dg~I~iW---d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s- 455 (730)
..+.+..+........|+.-+..|.++-. ++..... . ..|..+...+.-.....|.++..-
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--------------~-~~G~~i~~~l~l~~~e~i~~~~~~~ 104 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--------------T-ARGQHVANLLAFQPEERIAQVIQIR 104 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--------------S-SCCEEHHHHTTCCTTCCEEEEEEES
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--------------c-CCCEEHHHccCCCCCCEEEEEEEec
Confidence 35567777666777778888888766543 3322211 0 112221111111234455554332
Q ss_pred ----CcEEEEee-CCEEEEEEcCCceE-------EEEEcCCCCCeEEEEEcCCC-eEEEEECCCcEEEEecC--CC----
Q 004789 456 ----GSHLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--TK---- 516 (730)
Q Consensus 456 ----~~~l~s~s-dg~I~vwd~~t~~~-------~~~~~~~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~--~~---- 516 (730)
..+++..+ +|.|+...+..... ...+.. ...+..+...... .++..+..|.+..+... .-
T Consensus 105 ~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~g 183 (327)
T 3uc1_A 105 GYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMG 183 (327)
T ss_dssp STTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCC
T ss_pred cCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCC
Confidence 56788888 99999988755322 122333 3445455444444 77778888988887766 21
Q ss_pred c---eEE--EEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceecc--eeecccc-cCCCCCCCCeEEEEEec-
Q 004789 517 K---TKA--KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSFQ-TGLVPETTIVNHIQFHP- 587 (730)
Q Consensus 517 ~---~~~--~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~~--~~i~~~~-~~h~~~~~~v~~l~~sp- 587 (730)
. -+. .+. ....|.++...+++..++.++..|.++.-.+........ .-+..+. .... +.+..+....
T Consensus 184 r~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~---d~lv~~~~~~~ 259 (327)
T 3uc1_A 184 RATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR---GRLVGALIVDD 259 (327)
T ss_dssp TTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT---CSEEEEEEECT
T ss_pred cCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC---CeEEEEEEeCC
Confidence 1 111 122 345677776666677889999999999887654221100 1111011 1111 3444444433
Q ss_pred CCcEEEEEecCcEEEEeCC
Q 004789 588 DQIHLLSIHEGQIDVYEAP 606 (730)
Q Consensus 588 dg~~l~~s~dg~I~iwd~~ 606 (730)
+...++.+.+|.+.-++..
T Consensus 260 ~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 260 DSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCEEEEEEGGGCEEEEEGG
T ss_pred CccEEEEcCCCeEEEEehh
Confidence 3444455777887777654
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.02 E-value=1.8e+02 Score=28.73 Aligned_cols=200 Identities=9% Similarity=0.039 Sum_probs=105.0
Q ss_pred CCCCeeEeecCCCcEEEEeecCCCCCc----ceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCcccc
Q 004789 342 PDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 417 (730)
Q Consensus 342 pdg~~lat~~~dg~i~lWd~~~~~~~~----~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~~ 417 (730)
|+..++++.+.+|.|+--.+....... -...+.+. -.+.+..+........|+..+..|.+.-.....-...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k---e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~- 76 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK---EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEA- 76 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCC-
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC---CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCC-
Confidence 456778889999999766654322110 11111111 2456666666666677888888887655443221110
Q ss_pred ccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE----e-CcEEEEee-CCEEEEEEcCCc-------eEEEEEcCC
Q 004789 418 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLETF-------QTLATFANP 484 (730)
Q Consensus 418 ~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~----s-~~~l~s~s-dg~I~vwd~~t~-------~~~~~~~~~ 484 (730)
-| ...|..+...+.-.....|.++.. . +.+++..+ .|.++-..+... .....+..+
T Consensus 77 ----------~~-~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~ 145 (307)
T 1zi0_A 77 ----------TR-GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 145 (307)
T ss_dssp ----------CS-SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT
T ss_pred ----------CC-CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC
Confidence 00 012221111110023445555533 3 56677777 899999877532 121223333
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-------ceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 004789 485 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDA 555 (730)
Q Consensus 485 ~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-------~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~ 555 (730)
+.+..+....+. .++..+.+|.+..++...- .-+..+.- ....|.++....++..+++.+..|.++-.++
T Consensus 146 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 146 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp -CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred -CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 455455444444 7777888888887775321 11111111 3456777665555667888899999888877
Q ss_pred CC
Q 004789 556 VG 557 (730)
Q Consensus 556 ~~ 557 (730)
..
T Consensus 225 ~e 226 (307)
T 1zi0_A 225 AE 226 (307)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.00 E-value=32 Score=37.84 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=42.9
Q ss_pred CeEEEEEecCCcEEEEEec--------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 004789 579 IVNHIQFHPDQIHLLSIHE--------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 639 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s~d--------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs 639 (730)
..-.|+|+|.|.+++. .| +.+.+.+..+++..+.+.. .....++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 3457999999986555 22 2366677777776655554 3478999999999999888763
No 370
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=51.31 E-value=67 Score=25.87 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhh
Q 004789 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRK 86 (730)
Q Consensus 12 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 86 (730)
.-.....+...++...-|.++...+++=.....+ ...-.-....|+|++|+.++.......+... .+++.+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHHHHH
Confidence 3455666777777788888888888875555443 2222334568999999998876532332211 12222211
Q ss_pred hhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHh
Q 004789 87 HKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 87 q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll 127 (730)
=+...++.++|+.++++-+.-. ..+.+....|+.+.
T Consensus 93 ----~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 93 ----ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCM 128 (133)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHH
T ss_pred ----HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 1346789999999999854322 12344555555544
No 371
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=49.37 E-value=90 Score=24.21 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhh
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 88 (730)
.....+...++....|.++...+++=-....+ ...=.-....|+|++|...+...-...+... .+++.+-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~-- 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAA-- 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHHHH--
Confidence 34455666667777788877777653322221 2222334567999999888866532322211 12222211
Q ss_pred hHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHH
Q 004789 89 YCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (730)
Q Consensus 89 ~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l 126 (730)
=+...|+..+|+..+++-+.-. ..++.....++.+
T Consensus 81 --~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 --ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp --HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred --HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 1345788888999888754322 1244444444443
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.19 E-value=2.1e+02 Score=28.50 Aligned_cols=161 Identities=10% Similarity=0.030 Sum_probs=89.8
Q ss_pred CCCeEEEEEcC---CC-eEEEEECCCcEEEEecCCCc-------eEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 004789 485 PPIATYFILLP---QD-LFAFGFDDSSILVHCPCTKK-------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 553 (730)
Q Consensus 485 ~~~v~~i~~sp---dg-~l~sgs~dg~I~iwd~~~~~-------~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vw 553 (730)
...|.++...+ +. .++..+.+|.|+-..+.... ..-.++. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 34555554433 35 89999999999988765422 1112332 3556666555566678888889998888
Q ss_pred EcC--CC----ceecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc-------eeeeecCCCC
Q 004789 554 DAV--GW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-------HTSQLVPDKM 619 (730)
Q Consensus 554 d~~--~~----~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~-------~~~~~~~~~h 619 (730)
... .- ........-.+..+ ..|.++...+++.+++. +..|.++.-.+.... -+..+.....
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 776 31 11011111112122 45777666555555555 788888887754322 1222221111
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 620 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
...+..+....+...++..+.+|.+.-++...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 33455555444455666667777777776543
No 373
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=48.01 E-value=82 Score=30.58 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=55.2
Q ss_pred HHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHH
Q 004789 19 LIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (730)
Q Consensus 19 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 93 (730)
+-..++..-.|.++...+++=.....+ ...=+-.+..|++++|+..+..+....++ .. ...-..-++++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-----~~-~~~~~~~~~l~ 196 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-----TR-YQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-----HH-HHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-----hH-HHHHHHHHHHH
Confidence 333444455566666555543322222 23334456678888888888777433332 11 11222334566
Q ss_pred hcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 94 ~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
..++..+|+..|++.+.-- -.+.+....|+.++..
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 6677777777777643322 1255666666666554
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.42 E-value=60 Score=36.44 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=27.7
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 630 CDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 630 pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
.+..++++-+.|.++++|++.+++++.....
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4578999999999999999999999888775
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.92 E-value=60 Score=35.38 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCcEEEEE--e-----------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 578 TIVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 578 ~~v~~l~~spdg~~l~~s--~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
.....|+|.++|.+.++. . .+.+..++..+++....+.. .....++.++|+||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEEe
Confidence 356789999999877742 1 12577778777776554432 22567899999999999887653
No 376
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=44.73 E-value=88 Score=26.69 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhh
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKH 87 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 87 (730)
-.-...+-..++..--|.++...+++=.....+ ...=.-....|+|++|+..+...-.+.++.. ..+|.+-
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg-- 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--RFPFHAA-- 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHHH--
Confidence 334455556666667788877777653332222 1222234567889888887765533333321 1333221
Q ss_pred hhHHHHhcCChHHHHHHHHhh
Q 004789 88 KYCEALCRHERTEADSIFRKD 108 (730)
Q Consensus 88 ~~lEll~~~~~~~A~~~l~~~ 108 (730)
.=++..|+.++|+..+++-
T Consensus 97 --~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 97 --ECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp --HHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHcCCHHHHHHHHHHH
Confidence 1234678888888888874
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=44.61 E-value=3.8e+02 Score=30.05 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=110.9
Q ss_pred CEEEEEEcCCceEEE-EEcCCCC--------CeEEEEEcCCC-eEEEEE----------CCCcEEEEecCCC--ceEEEE
Q 004789 465 GKISIFSLETFQTLA-TFANPPP--------IATYFILLPQD-LFAFGF----------DDSSILVHCPCTK--KTKAKL 522 (730)
Q Consensus 465 g~I~vwd~~t~~~~~-~~~~~~~--------~v~~i~~spdg-~l~sgs----------~dg~I~iwd~~~~--~~~~~~ 522 (730)
..|+++|+.+++.+. .+. ... ....++|..++ .+++.. ....|+.|.+-+. +-...+
T Consensus 156 ~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~ 234 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLF 234 (711)
T ss_dssp EEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEE
T ss_pred eEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEe
Confidence 379999999998763 122 110 11345887444 444321 1236888887654 233344
Q ss_pred cCCCCC-eEEEEEeCCCC-----EEEEEeCC---CcEEEEEcCCCceecceeecccccCCCCCCCCeEEEEEecCCcEEE
Q 004789 523 KGHQNR-ITCLAYSLSLN-----VLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 593 (730)
Q Consensus 523 ~~h~~~-V~~l~~spd~~-----~l~s~s~d---g~I~vwd~~~~~~~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~ 593 (730)
.+.... -.+...+++++ .+++.+.+ ..+.+.|...... .... +..... ..+..+.++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~-l~~~~~------~~~~~~~~~~~~~ 304 (711)
T 4hvt_A 235 EVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL---KLQK-INMPSD------ATLQGSFKEYVFW 304 (711)
T ss_dssp ECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC---EEEE-CCSCTT------CEEEEEETTEEEE
T ss_pred ccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC---cceE-eecCCc------ceEeeeECCEEEE
Confidence 443323 23445566665 24443322 3456666653110 1111 111111 1234455666655
Q ss_pred EE-----------ecCcEEEEeCCCCc-------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe--EEEEECCCce
Q 004789 594 SI-----------HEGQIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLE 653 (730)
Q Consensus 594 ~s-----------~dg~I~iwd~~~~~-------~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~--I~iwd~~~~~ 653 (730)
.. ..+.|...|+.++. ..+.+..+.....+..+.+..+ .++++...++. |+++++.+++
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 305 LLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp ECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred EECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 32 24668899987642 2233222233566778888865 57777777764 6777776664
Q ss_pred -EEEE-eecccccCCCCcccceeeEEEEEecCCCCEEEEEeC---CCcEEEEeCC
Q 004789 654 -LRCQ-INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT---NGRVHVIEPL 703 (730)
Q Consensus 654 -~~~~-~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~---Dg~I~iWd~~ 703 (730)
.... +... + .+.+. .+...+..+.++++.+. -+.+..+++.
T Consensus 384 ~~~~~~i~lp-----~--~~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 384 WTKPVVLKLP-----Y--QNAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ECCCEEECCC-----S--TTCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEeccCCC-----C--CeEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 1222 2211 1 12344 44555633455555543 3567777776
No 378
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=43.17 E-value=92 Score=26.57 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHhcc
Q 004789 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll~~ 129 (730)
....|+|++|+..+.+.-.+.++.. .+++.+- .=+...|+.++|+..+++- +.|- +.+.+..|+.++..
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg----~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERDP--KAHRFLG----LLYELEENTDKAVECYRRSVELNPT---QKDLVLKIAELLCK 111 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH----HHHHHcCchHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 4678999999999976533443322 1233221 1234679999999999985 4444 67888888887754
No 379
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.17 E-value=97 Score=30.16 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhHhc-HHHHHHHHHH--hcCCcc-h--HHHH--HHHHhCCCHHHHHHHhcccccccCCccccchhhhhh
Q 004789 14 THLITLIMKFLEEEN-FKESLQALEQ--ESKIFF-N--VHRF--GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELR 85 (730)
Q Consensus 14 ~e~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 85 (730)
-+.++++.+++...| +.++.+.|++ +.++.. + +... .-....|++++|+..+.. +.+.. +.+.+-
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~---~~~~l~ 137 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLE---CMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHH---HHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHH---HHHHHH
Confidence 356677777777776 7888888876 333322 2 2222 345578999999988887 22211 222221
Q ss_pred hhhhHHHHhcCChHHHHHHHHhhc
Q 004789 86 KHKYCEALCRHERTEADSIFRKDL 109 (730)
Q Consensus 86 ~q~~lEll~~~~~~~A~~~l~~~l 109 (730)
+ =++..|+.++|...|++-+
T Consensus 138 -~---~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 138 -Q---ILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -H---HHHHTTCHHHHHHHHHHHH
T ss_pred -H---HHHHCCCHHHHHHHHHHHH
Confidence 1 2446788888988888743
No 380
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=42.58 E-value=19 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHhcHHHHHHHHHHhcCCc
Q 004789 15 HLITLIMKFLEEENFKESLQALEQESKIF 43 (730)
Q Consensus 15 e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 43 (730)
-+.-||-.||+=.||+-|+..++-|||..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 37789999999999999999999999997
No 381
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=41.90 E-value=1.1e+02 Score=25.55 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhh
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 88 (730)
.-+..+-..++...-|.++...+++=.....+ ...=.-....|+|++|+..+...-.+.+... ..+|.+-
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg--- 93 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP--RFPFHAA--- 93 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHH---
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHHH---
Confidence 33444555556666677776666543322222 1111233457777777776655432322211 0222211
Q ss_pred hHHHHhcCChHHHHHHHHhh
Q 004789 89 YCEALCRHERTEADSIFRKD 108 (730)
Q Consensus 89 ~lEll~~~~~~~A~~~l~~~ 108 (730)
.=+...|+.++|+..+++-
T Consensus 94 -~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 94 -ECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp -HHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHcCCHHHHHHHHHHH
Confidence 1133567777777777763
No 382
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.04 E-value=1.1e+02 Score=24.64 Aligned_cols=87 Identities=8% Similarity=0.022 Sum_probs=50.9
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhH
Q 004789 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~l 90 (730)
...+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+...-.+.+... ..++.+- .
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg----~ 80 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRKA----T 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHH----H
Confidence 444555666777788887777654333332 2223334568999999988866533433321 1222221 1
Q ss_pred HHHhcCChHHHHHHHHhh
Q 004789 91 EALCRHERTEADSIFRKD 108 (730)
Q Consensus 91 Ell~~~~~~~A~~~l~~~ 108 (730)
=+...|+.++|+..+++-
T Consensus 81 ~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 81 AQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 234568899999999874
No 383
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=38.66 E-value=1.4e+02 Score=23.28 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=54.8
Q ss_pred HHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHH
Q 004789 17 ITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCE 91 (730)
Q Consensus 17 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 91 (730)
..+...++...-|.++...+++=.....+ ...-.-....|++++|+..+.......+... ..++.+- .-
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la----~~ 86 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLG----NA 86 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHH----HH
Confidence 33444455566677777766653322221 2233345678999999988876532322211 1222221 11
Q ss_pred HHhcCChHHHHHHHHhhcccccccChhHHHHHHHH
Q 004789 92 ALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (730)
Q Consensus 92 ll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l 126 (730)
+...++.++|+..+++-+.-. ..+......|+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 335788999999998754322 1244444555444
No 384
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=38.30 E-value=1.4e+02 Score=27.32 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhH
Q 004789 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~l 90 (730)
...+-..++..-.|.++...+++--....+ ...=.-....|++++|+..+.+.-.+.++.. ..++.+- ..|+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg-~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLS-EAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHH-HHHH
Confidence 344555666777788888888876665554 2222334668999999998876543433322 1222221 1222
Q ss_pred HH--------HhcCChHHHHHHHHhh--cccccccChhHHHHHHHHhcc
Q 004789 91 EA--------LCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 91 El--------l~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll~~ 129 (730)
++ +..|+.++|+..+++- +.|- +.+.+..|+.++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPR---YAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHH
Confidence 21 1228889999999985 4443 45556666665543
No 385
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=37.95 E-value=1.4e+02 Score=27.79 Aligned_cols=109 Identities=6% Similarity=0.002 Sum_probs=59.5
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhH
Q 004789 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~l 90 (730)
+++.-..++....|.++...+++=-....+ ...-.-....|+|++|+..+...-..+.+.. .....+...=.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHHHHHHHHH
Confidence 455555566666778877777664332221 3333356678999999888876533332211 21111222222
Q ss_pred HHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhc
Q 004789 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (730)
Q Consensus 91 Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~ 128 (730)
=+...|+.++|+..+++-+.-- ..+...+..|+.+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 2345688888888888743322 124455556655543
No 386
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.31 E-value=1.2e+02 Score=29.35 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=59.9
Q ss_pred HHHHhHhcHHHHHHHHHHhcCCcch--HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHH-hcCC
Q 004789 21 MKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL-CRHE 97 (730)
Q Consensus 21 ~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll-~~~~ 97 (730)
.-++..--|.++...|++ +-..+ ...-.-....|++++|+..+.......+.. ..+.+. ..++.++ ..++
T Consensus 109 ~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~~~l~~~~~~ 181 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHHHHHHHCTTH
T ss_pred HHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHHHHHHhCchH
Confidence 444566678888888888 33333 333445667899999999998774343321 222221 1223333 4478
Q ss_pred hHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 98 RTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 98 ~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
.++|+.++++-+.-. -.+...+..|+.++..
T Consensus 182 ~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 182 LQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 888999998754433 2255556666655544
No 387
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=35.66 E-value=45 Score=26.16 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=41.9
Q ss_pred HHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhccccc-ccChhHHHHHHHHhc
Q 004789 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFS-VSQNRIDCELAELLA 128 (730)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~-~~~~~~~~~l~~ll~ 128 (730)
....|+|++|+..+...-.+.+... .+++.+- +. +...|+.++|+..+++-+.--. ..+.....+|..++.
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg-~~---~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYV--GTYYHLG-KL---YERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHH-HH---HHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHH-HH---HHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 4568999999999876643433322 1333222 12 3467999999999998543221 224455555555554
No 388
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=35.23 E-value=3.2e+02 Score=26.42 Aligned_cols=184 Identities=6% Similarity=0.001 Sum_probs=98.2
Q ss_pred CcEEEEeeCCEEEEE---EcCCceEEEEEcCCCCCeEEEEEcC--CC-eEEEEECCCcEEEEecCCCc------eEEEEc
Q 004789 456 GSHLFSASGGKISIF---SLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKK------TKAKLK 523 (730)
Q Consensus 456 ~~~l~s~sdg~I~vw---d~~t~~~~~~~~~~~~~v~~i~~sp--dg-~l~sgs~dg~I~iwd~~~~~------~~~~~~ 523 (730)
...++..+.|.++-- ++..+.... +-.....|..+.. + +. .++..+.+|.|+...+..-. ..-.++
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC
Confidence 444555557766643 333222111 2223455666644 4 35 88899999999998865431 111222
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce----ecceeecccccCCCCCCCCeEEEEEecCCcEEEE-EecC
Q 004789 524 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK----LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 598 (730)
Q Consensus 524 ~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~----~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg 598 (730)
..+.+..+....+...++..+..|.+..++...-.. ......-.+..+ ..|..+...+++..++. +..|
T Consensus 114 -egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 -EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp -TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEEEETTS
T ss_pred -CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEEEeCCC
Confidence 235566665555666788888999988887643111 011111112222 35666655555555555 7888
Q ss_pred cEEEEeCCCCc-------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE--EECC
Q 004789 599 QIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTS 650 (730)
Q Consensus 599 ~I~iwd~~~~~-------~~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~i--wd~~ 650 (730)
.++...+.... -+..+ . ....+..+....+...++..+.+|.+.. ++..
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i-~--~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVS-G--TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECC-C--SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred cEEEeEHHHcccCCCCCcceEEE-c--CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 88887764321 12222 1 1344554444333445666666777666 6554
No 389
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.88 E-value=69 Score=26.51 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=7.7
Q ss_pred hcCChHHHHHHHHh
Q 004789 94 CRHERTEADSIFRK 107 (730)
Q Consensus 94 ~~~~~~~A~~~l~~ 107 (730)
..++.++|+..+++
T Consensus 77 ~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 77 KLEDYDKAETEASK 90 (148)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHccHHHHHHHHHH
Confidence 44555555555554
No 390
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=34.06 E-value=4.9e+02 Score=28.23 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=79.9
Q ss_pred CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEEecCCCEEEEEEc--------------CCe
Q 004789 579 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCK--------------SGH 643 (730)
Q Consensus 579 ~v~~l~~spdg~~l~~s~dg~I~iwd~~~~~~~~~~~~~~h-~~~v~~~~~spdg~~l~sgs~--------------dg~ 643 (730)
.+....-.++|.+++. ....+..+|. .++.+..+..... ...-..+...|+|+.|+.+.. +..
T Consensus 208 ~l~~~~g~~nG~l~~g-~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~ 285 (571)
T 3elq_A 208 YLMGIRETPRGTFTAV-QGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDH 285 (571)
T ss_dssp CCEEEEECTTSCEEEE-EBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCE
T ss_pred eEEEEEecCCCCEEEe-cCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccE
Confidence 4555555678877664 3345888887 5777666654211 011233556789998876532 346
Q ss_pred EEEEECCCceEEEEeecccccCC-----------------------CC------------------cccceeeEEEEEec
Q 004789 644 VKVFDTSTLELRCQINLTAYAQP-----------------------GT------------------ISLELYPLVIAAHP 682 (730)
Q Consensus 644 I~iwd~~~~~~~~~~~~~~~~~~-----------------------gh------------------~~~~v~~~~v~~sp 682 (730)
|...| .+|+.+..+........ |. ......+.+|.+.+
T Consensus 286 I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~ 364 (571)
T 3elq_A 286 ILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDA 364 (571)
T ss_dssp EEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEET
T ss_pred EEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcC
Confidence 77778 88988888764322210 10 01222244899988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeeccCCC
Q 004789 683 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 715 (730)
Q Consensus 683 ~~~~~las~s~Dg~I~iWd~~~~~~~w~~~~~~ 715 (730)
.++++|+|+-.- .|...+. +++..|..-++.
T Consensus 365 ~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 365 KDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 555677777666 6666675 889999986664
No 391
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=33.12 E-value=20 Score=31.97 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=33.9
Q ss_pred CccccCccchhHHHHHHHHHHhHhcHHHHHH-----HHHHhcCCcch
Q 004789 4 SKMCIDKDTYTHLITLIMKFLEEENFKESLQ-----ALEQESKIFFN 45 (730)
Q Consensus 4 ~~~~~~~~~~~e~~~li~q~L~~~g~~~s~~-----~L~~Esg~~~~ 45 (730)
+.+-++|.+.++-.+-|.+||.+.||+..+. -++.|||+...
T Consensus 5 ~~~~~t~~~~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 5 SNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 3455567788899999999999999988765 47999997664
No 392
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.89 E-value=1.1e+02 Score=33.53 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=40.3
Q ss_pred CeEEEEEecCCCEEEEEEcC------------CeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCEEE
Q 004789 622 PITYATYSCDGKCIYVSCKS------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 689 (730)
Q Consensus 622 ~v~~~~~spdg~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~la 689 (730)
..-.++|+|.|.++++-..+ +.+.+.+..++++...+. +....++. .++|+| |++.|.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-------~P~gaE~T--G~~fsp-Dg~tlf 546 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-------GPIGCEVT--GISFSP-DQKTLF 546 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-------CCTTCEEE--EEEECT-TSSEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-------CCCCccCc--CeeECC-CCCEEE
Confidence 45678999999966654322 245666777787665554 33355677 999999 777665
Q ss_pred EE
Q 004789 690 LG 691 (730)
Q Consensus 690 s~ 691 (730)
..
T Consensus 547 vn 548 (592)
T 3zwu_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 393
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=31.90 E-value=89 Score=25.13 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHHhCCCHHHHHHHhcccccc-cCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccC---hhHHHHHHHH
Q 004789 51 EIVMNGEWEKAEKYLSAFTKL-DDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQ---NRIDCELAEL 126 (730)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~---~~~~~~l~~l 126 (730)
.....|+|++|+..+..+... |.+.....++|.+- .=+...|+..+|+..+++-+.-.. .+ ++.+..|+.+
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg----~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLG----ESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHH----HHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHH
Confidence 345678888888777665322 22211011222221 123456788888888877543221 12 3444555554
Q ss_pred hc
Q 004789 127 LA 128 (730)
Q Consensus 127 l~ 128 (730)
..
T Consensus 86 ~~ 87 (129)
T 2xev_A 86 QY 87 (129)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 394
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=31.83 E-value=5.2e+02 Score=27.95 Aligned_cols=56 Identities=11% Similarity=-0.051 Sum_probs=31.6
Q ss_pred EEEEEcCCceEEEEEcCC--CCC---------------eEEEEEcCC-C-eEEEEE---CCCcEEEEecCCCceEEEE
Q 004789 467 ISIFSLETFQTLATFANP--PPI---------------ATYFILLPQ-D-LFAFGF---DDSSILVHCPCTKKTKAKL 522 (730)
Q Consensus 467 I~vwd~~t~~~~~~~~~~--~~~---------------v~~i~~spd-g-~l~sgs---~dg~I~iwd~~~~~~~~~~ 522 (730)
+.++|=.||+.+.++.-. .+. ..++++... . .++.+- .-..|..||.+.++....+
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W 308 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLW 308 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEE
Confidence 789998899888876532 111 223333211 1 333332 1225888998888765544
No 395
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.42 E-value=2.2e+02 Score=23.11 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch--------HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhh
Q 004789 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFFN--------VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFE 83 (730)
Q Consensus 12 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (730)
.-.....+...++...-|.++...+++=-....+ ...=.-....|+|++|+..+.....+.+... .+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--KALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--HHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--HHHHH
Confidence 4455666777778888899999988875544432 2222335678999999998876533332211 13332
Q ss_pred hhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHh
Q 004789 84 LRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 84 i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll 127 (730)
+-. =+...++.++|+.++++-+.-. ..+.+....|..+.
T Consensus 105 ~a~----~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQ----ALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHH----HHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHH----HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 211 1345799999999999854432 22444455555543
No 396
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.31 E-value=2.2e+02 Score=34.18 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=27.7
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 004789 677 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 710 (730)
Q Consensus 677 ~v~~sp~~~~~las~s~Dg~I~iWd~~~~~~~w~ 710 (730)
+++..+ +..++++-+.|+++|||++.++.+.-.
T Consensus 242 s~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 242 SMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred EeeccC-CccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 566667 778999999999999999999976544
No 397
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=29.66 E-value=1.3e+02 Score=25.73 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=53.4
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhH
Q 004789 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~l 90 (730)
...+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+...-.+.+... .++|.+- .
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg----~ 87 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWSRLG----L 87 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHH----H
Confidence 444555666677788888877764433332 2233345678999999998876533433321 1233221 1
Q ss_pred HHHhcCChHHHHHHHHhhcc
Q 004789 91 EALCRHERTEADSIFRKDLK 110 (730)
Q Consensus 91 Ell~~~~~~~A~~~l~~~l~ 110 (730)
=+...|++++|+..+++-+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 23456899999999997543
No 398
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=29.47 E-value=1.5e+02 Score=24.20 Aligned_cols=103 Identities=8% Similarity=0.116 Sum_probs=54.1
Q ss_pred HHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCcccc-chhhhhhhhhhHHHHhc
Q 004789 22 KFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK-KMFFELRKHKYCEALCR 95 (730)
Q Consensus 22 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~~~i~~q~~lEll~~ 95 (730)
.+.+...|.++...+++=-.+..+ ...=.-....|+|++|+..+.+.-.+.+..... ..+-.++-..=.-+...
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 345555677777766653322222 112223567899999999876542232221100 00111111111123467
Q ss_pred CChHHHHHHHHhhcccccccChhHHHHHHHH
Q 004789 96 HERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (730)
Q Consensus 96 ~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l 126 (730)
++..+|+..+++-|... .+++....|..+
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~~l~~l 125 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVKKVKEL 125 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHHHHHHh
Confidence 89999999999866532 356666666543
No 399
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=29.37 E-value=2.1e+02 Score=27.35 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-------HH----HHHHHHhCCCHHHHHHHhccc-ccccCCccccchh
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-------VH----RFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKMF 81 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-------~~----~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~ 81 (730)
.++...+..++....|.++...+++.-..... .. .-.-....|++++|+.++.+. ........ ....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-VYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-TTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-hHHH
Confidence 45566777788888898888877654322211 00 011134578999999987543 21111111 1012
Q ss_pred hhhhhhhhHHHHhcCChHHHHHHHHhhcc
Q 004789 82 FELRKHKYCEALCRHERTEADSIFRKDLK 110 (730)
Q Consensus 82 ~~i~~q~~lEll~~~~~~~A~~~l~~~l~ 110 (730)
..++-..-.=+...+++++|+.++.+-+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444455678999999999998663
No 400
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=29.29 E-value=1.3e+02 Score=23.01 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=43.4
Q ss_pred HHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHH
Q 004789 19 LIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (730)
Q Consensus 19 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 93 (730)
+..-++....|.++...+++=-....+ ...=.-....|+|++|+..+.+.....+......+++.+ -.=+.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l----~~~~~ 87 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK----ADALR 87 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH----HHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH----HHHHH
Confidence 333444555566666655542222111 222223456788888888776553232220001122221 11234
Q ss_pred hc-CChHHHHHHHHhhcc
Q 004789 94 CR-HERTEADSIFRKDLK 110 (730)
Q Consensus 94 ~~-~~~~~A~~~l~~~l~ 110 (730)
.. ++.++|+.++++-+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 56 788888888886543
No 401
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=29.24 E-value=87 Score=25.54 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=36.3
Q ss_pred HHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHh
Q 004789 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll 127 (730)
...+..|+|++|+..+...-.+.++.. ..++.+-. . +...|+.++|+..+++- +.|- +.+.+..|+.++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~-~---~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~ 95 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGL-T---QAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHH-H---HHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHH-H---HHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 345567788777777765532332211 12222211 1 23567777788777763 3333 444555555544
Q ss_pred c
Q 004789 128 A 128 (730)
Q Consensus 128 ~ 128 (730)
.
T Consensus 96 ~ 96 (121)
T 1hxi_A 96 T 96 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 402
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=28.80 E-value=2e+02 Score=31.31 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=40.7
Q ss_pred CCCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCceEEEEeecccccCCCCcccceeeEEEEEecCCCCE
Q 004789 620 DLPITYATYSCDGKCIYVSCK------------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 687 (730)
Q Consensus 620 ~~~v~~~~~spdg~~l~sgs~------------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~ 687 (730)
-.....++|.++|.+.++... .+.|+.++..++++...+. +.....++ .++|+| |++.
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-------~P~~aEpn--GiafSP-D~kt 544 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-------GPIGCEVT--GISFSP-DQKT 544 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-------CCTTCEEE--EEEECT-TSSE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-------CCCCcccc--CCEECC-CCCE
Confidence 345678999999987774321 2267777887888665553 22133455 999999 6776
Q ss_pred EEEE
Q 004789 688 IALG 691 (730)
Q Consensus 688 las~ 691 (730)
|.++
T Consensus 545 LfV~ 548 (592)
T 4a9v_A 545 LFVG 548 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 403
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=28.58 E-value=2.2e+02 Score=24.39 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhh
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKH 87 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 87 (730)
-++|-.-+.++|.+-+. |++=..+..+ ...=......|++++|+..+...-.+.+... .+++.+-
T Consensus 8 ~~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg-- 77 (151)
T 3gyz_A 8 NESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLA-- 77 (151)
T ss_dssp -CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH--
Confidence 45667777777776654 2222233332 1112334567888888888876643443322 1222211
Q ss_pred hhHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHhcc
Q 004789 88 KYCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 88 ~~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll~~ 129 (730)
.=+...|++++|+.++++- +.|- +++.+..|+.++..
T Consensus 78 --~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 78 --AIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQCQLR 116 (151)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHHHHH
T ss_pred --HHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHH
Confidence 1234668888888888874 4443 55666666666544
No 404
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=28.47 E-value=2.5e+02 Score=25.12 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-HH--------------------HHHHHHhCCCHHHHHHHhccccccc
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-VH--------------------RFGEIVMNGEWEKAEKYLSAFTKLD 72 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~--------------------~~~~~i~~g~w~~~~~~l~~~~~~~ 72 (730)
.+++..-..++..-.|.++...+++=.....+ .. .=.-....|++++|+..+...-.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45566666777777788888877764444333 11 2223467899999999887653343
Q ss_pred CCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHh
Q 004789 73 DSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 73 ~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll 127 (730)
++.. .+++.+-. =+...|+.++|+.++++- +.|- +.+.+..|+.++
T Consensus 85 p~~~--~~~~~lg~----~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 PNNV--DCLEACAE----MQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYY 132 (208)
T ss_dssp TTCH--HHHHHHHH----HHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHH----HHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Confidence 3322 13332211 134679999999999985 4443 566666676654
No 405
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=28.26 E-value=1.7e+02 Score=23.57 Aligned_cols=91 Identities=14% Similarity=-0.022 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhh
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKH 87 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 87 (730)
-.....+-..++....|.++...+++=-....+ ...=.-....|+|++|+..+.....+.+... .+++.+-
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~-- 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLG-- 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHHHH--
Confidence 344555666667777788888777653333222 2222334568999999998876533333321 1333222
Q ss_pred hhHHHHhcCChHHHHHHHHhhc
Q 004789 88 KYCEALCRHERTEADSIFRKDL 109 (730)
Q Consensus 88 ~~lEll~~~~~~~A~~~l~~~l 109 (730)
.=+...|+.++|+..+++-+
T Consensus 85 --~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 --QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp --HHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHhhHHHHHHHHHHHH
Confidence 12345689999999998743
No 406
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.14 E-value=49 Score=39.81 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=33.6
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEeec
Q 004789 621 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 660 (730)
Q Consensus 621 ~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 660 (730)
..+.+++..++..++++-+.|++++||++.+++++.+...
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3455666778889999999999999999999999887664
No 407
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=26.83 E-value=3.3e+02 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=17.7
Q ss_pred HhcCChHHHHHHHHhhcccccccChhHHHHHHHHhc
Q 004789 93 LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (730)
Q Consensus 93 l~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~ 128 (730)
...|+.++|+.++++-+.-. ..+...+..|+.+..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34566777777777643322 113444444444443
No 408
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=26.79 E-value=2e+02 Score=24.93 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhh
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 88 (730)
...+.+...++..-.|.++...+++=.....+ ...=.-.+..|+|++|+..+.......++ . ...... -
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~--~~~~~~---~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD-N--SYKSLI---A 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-H--HHHHHH---H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-h--HHHHHH---H
Confidence 34667777888888888888888653332222 22223356789999999999887434331 1 111111 1
Q ss_pred hHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 89 YCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 89 ~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
.+.+...++..+|+..|++-+.-- -.+.+.+..|+.++..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQ 120 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 233334444456788888754322 1255666677766654
No 409
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.76 E-value=38 Score=26.27 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch--HHHHHHHHhCC
Q 004789 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNG 56 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g 56 (730)
-.++.+-||++|++.| .|+..|-+|-|++-. -+.|.....+|
T Consensus 15 ~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp SHHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4568888889999999 999999999999886 34444444444
No 410
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=26.72 E-value=1.5e+02 Score=24.07 Aligned_cols=56 Identities=21% Similarity=0.100 Sum_probs=37.4
Q ss_pred HhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 53 VMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 53 i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
+..++-+.++.+|..|+.++.. +|+|..=....++.-||+. ...+.+..|+.-|..
T Consensus 25 ~~~~~~~~~l~~L~~L~~~~iT---------------~e~L~~T~IGk~Vn~LrKh------~~~~~V~~lAk~Lv~ 80 (103)
T 1wjt_A 25 VSRKKTEGALDLLKKLNSCQMS---------------IQLLQTTRIGVAVNGVRKH------CSDKEVVSLAKVLIK 80 (103)
T ss_dssp HHTTCCSSHHHHHHHHHTSCCC---------------HHHHHHTCHHHHHHHHHHH------CCCSHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHhCCCCC---------------HHHHHHcchhHHHHHHHcc------CCcHHHHHHHHHHHH
Confidence 3344445677777777656555 6788889999999999964 134556666665543
No 411
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.51 E-value=3.7e+02 Score=28.53 Aligned_cols=103 Identities=4% Similarity=-0.073 Sum_probs=59.2
Q ss_pred HHHHHHHHHhHhcHHHHHHHHH--HhcCCcch----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhh
Q 004789 16 LITLIMKFLEEENFKESLQALE--QESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 89 (730)
..-||--|.+.-.+.++...++ ++.|+..+ ...+......|++++|+.++..+... .-.... .-|...-..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~-~ty~~Li~~- 184 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEE-PELAALLKV- 184 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCH-HHHHHHHHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCH-HHHHHHHHH-
Confidence 3445555555556666666665 47788887 44566667889999999988766311 111101 333333222
Q ss_pred HHHHhcCChHHHHHHHHhhcccccccChhHHHHH
Q 004789 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCEL 123 (730)
Q Consensus 90 lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l 123 (730)
+...|+.++|+.+|++--.--...+...+..|
T Consensus 185 --~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 185 --SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred --HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 23568899999999863111112345555544
No 412
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.43 E-value=5.1e+02 Score=26.12 Aligned_cols=239 Identities=10% Similarity=0.032 Sum_probs=120.2
Q ss_pred CeeEEEEeCcEE-EEeeCCEEEEEEcCCc-----------eEEEEEcC-CCCCeEEEEEcCCC-eEEEEECCCcEEEEec
Q 004789 448 SISCFALRGSHL-FSASGGKISIFSLETF-----------QTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCP 513 (730)
Q Consensus 448 ~V~~l~~s~~~l-~s~sdg~I~vwd~~t~-----------~~~~~~~~-~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~ 513 (730)
.|..++...... +...||.|+.|-.... .....+.. ....+..++++... ..+.-..||.|+.|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 344444444444 4444899999964321 11111221 22344556666555 6666688999999965
Q ss_pred CCC-----------ceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-c--------eecceeecccccC
Q 004789 514 CTK-----------KTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW-K--------KLCSKFLHSFQTG 572 (730)
Q Consensus 514 ~~~-----------~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~-~--------~~~~~~i~~~~~~ 572 (730)
... .....+.. ....|..|+.. ..+.+....+|.|+.|-.... + ......+. ...+
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~-~~~~ 210 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVE-ALQG 210 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG-GGTT
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEec-ccCC
Confidence 421 11122222 12357676665 345555677999999965431 0 00011111 1111
Q ss_pred CCCCCCCeEEEEEec-CCcEEEEEecCcEEEEeCCCCce----------e-eeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 004789 573 LVPETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNH----------T-SQLVPDKMDLPITYATYSCDGKCIYVSCK 640 (730)
Q Consensus 573 h~~~~~~v~~l~~sp-dg~~l~~s~dg~I~iwd~~~~~~----------~-~~~~~~~h~~~v~~~~~spdg~~l~sgs~ 640 (730)
..|..++... +...++...+|.|+.|-...... . ..+.. .....|..++... .+.++-..
T Consensus 211 -----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~--~hs~alt~ 282 (389)
T 3kci_A 211 -----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGS--QFSVALTK 282 (389)
T ss_dssp -----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEET--TEEEEEET
T ss_pred -----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc-cCCCcEEEEeCCC--CEEEEEeC
Confidence 3466777654 23344457889999996532111 1 11111 1133466666543 34555568
Q ss_pred CCeEEEEECCCce------EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 004789 641 SGHVKVFDTSTLE------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 704 (730)
Q Consensus 641 dg~I~iwd~~~~~------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~~~ 704 (730)
||.|+.|-....- ......+.... .-....|. .++.. ..+.+....||.|+.|-...
T Consensus 283 ~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~--~l~~~~v~--~ia~G---~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ--GLQGKKVI--AIATG---SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TSCEEEEECCGGGTTCSSSCCCEEEEEECG--GGTTCCEE--EEEEC---SSEEEEEETTCCEEEEECCT
T ss_pred CCeEEEEeCCCCCCCCCCCCccccCCeEec--cCCCCCEE--EEEec---cCeEEEECCCCCEEEeeCCC
Confidence 9999999754311 00000000000 10112244 55543 34556667899999998764
No 413
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=26.39 E-value=1.5e+02 Score=29.45 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhh-cccccccChhHHHHHH
Q 004789 46 VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKD-LKVFSVSQNRIDCELA 124 (730)
Q Consensus 46 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~-l~~~~~~~~~~~~~l~ 124 (730)
+.+|++.|.+|++=||.+.+..+. .+ ++..+++.+|+.+|.+- +.-++.-...--..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~----------~R----------y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA----------NR----------YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH----------HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHH----------HH----------HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 788999999999998888877664 11 33445566666666652 3333333334444555
Q ss_pred HHhc
Q 004789 125 ELLA 128 (730)
Q Consensus 125 ~ll~ 128 (730)
.++.
T Consensus 77 ~llv 80 (312)
T 2wpv_A 77 FYLL 80 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 414
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=26.35 E-value=2.3e+02 Score=22.09 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHH
Q 004789 19 LIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (730)
Q Consensus 19 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll 93 (730)
+..-++...-|.++...+++=-....+ ...-.-....|+|++|..++.......+... ...+.+- .=+.
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~----~~~~ 80 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLG----NAYY 80 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHH----HHHH
Confidence 344445555566666666542222111 2223334567999999998876532322211 1222211 1134
Q ss_pred hcCChHHHHHHHHhhcccccccChhHHHHHHHHhc
Q 004789 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (730)
Q Consensus 94 ~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~ 128 (730)
..++.++|+.++.+-+... ..+...+..++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 114 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 6789999999998754433 123444555555443
No 415
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=25.70 E-value=1.6e+02 Score=29.49 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCH---HHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhh-cccccccChhHHH
Q 004789 46 VHRFGEIVMNGEW---EKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKD-LKVFSVSQNRIDC 121 (730)
Q Consensus 46 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~-l~~~~~~~~~~~~ 121 (730)
+.+|++.|.+|++ =||-+.+..+. .+ ++..+++.+|+.+|.+- +.-++.-...--.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVA----------AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----------HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHH----------HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 7889999999999 66666655553 22 23445555666665552 2223233344444
Q ss_pred HHHHHhc
Q 004789 122 ELAELLA 128 (730)
Q Consensus 122 ~l~~ll~ 128 (730)
.|+.++.
T Consensus 76 DL~~llv 82 (336)
T 3lpz_A 76 DLAVLLV 82 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 416
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.61 E-value=93 Score=34.90 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCeeEEEEeCcEEEEee-CCEEEEEEcCCceEEEEEcC
Q 004789 447 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 483 (730)
Q Consensus 447 ~~V~~l~~s~~~l~s~s-dg~I~vwd~~t~~~~~~~~~ 483 (730)
..|.++.+...++++-+ |.++++|++.+++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45666666678888888 99999999999999887654
No 417
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.19 E-value=2.4e+02 Score=22.08 Aligned_cols=110 Identities=8% Similarity=0.066 Sum_probs=56.6
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCc-cccchhhhhhhhhh
Q 004789 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSN-HSKKMFFELRKHKY 89 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~-~~~~~~~~i~~q~~ 89 (730)
...+...++...-|.++...+++=-....+ ...-.-....|+|++|+.++.......+.. ........++-..=
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344455556666677777776653332221 222333456899999998886553222111 00000011111122
Q ss_pred HHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHh
Q 004789 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 90 lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll 127 (730)
.=+...++.++|+.++++-+.-. .+++....|..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 22346789999999998754422 1344445555443
No 418
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.14 E-value=5.5e+02 Score=25.99 Aligned_cols=201 Identities=9% Similarity=0.002 Sum_probs=109.4
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCC----CCcceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLIN----EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~----~~~~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
-|+..++++.+.+|.|+=-.+.... .+.-...+.+. ..+.+..+........|+..+..|.+.-+....-...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk---e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK---EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS---CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC---CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 4678899999999999876554221 00011222221 4677877877777788888888887765443211110
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE----e-CcEEEEee-CCEEEEEEcCCce-------EEEEEcC
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLETFQ-------TLATFAN 483 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~----s-~~~l~s~s-dg~I~vwd~~t~~-------~~~~~~~ 483 (730)
-| ...|..+...+.-.....|.++.. . +.+|+.++ .|.++...+.... ....+..
T Consensus 81 -----------~r-~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~ 148 (370)
T 3l6v_A 81 -----------GS-NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE 148 (370)
T ss_dssp -----------CT-TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT
T ss_pred -----------Cc-ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC
Confidence 00 011221111110013445555433 2 55788888 8999988865332 2222322
Q ss_pred CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCCC-------ceEEEEcC-CCCCeEEEEEeC------------------
Q 004789 484 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTKAKLKG-HQNRITCLAYSL------------------ 536 (730)
Q Consensus 484 ~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~~-------~~~~~~~~-h~~~V~~l~~sp------------------ 536 (730)
.+.+..+...... .++..+.+|.+..++...- .-++-+.- ....|.++...+
T Consensus 149 -~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~ 227 (370)
T 3l6v_A 149 -GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVV 227 (370)
T ss_dssp -TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------
T ss_pred -CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccc
Confidence 3444444444444 7777788888777765321 11111111 234555555444
Q ss_pred -----------------CCCEEEEEeCCCcEEEEEcCC
Q 004789 537 -----------------SLNVLVSSGADAQLCVWDAVG 557 (730)
Q Consensus 537 -----------------d~~~l~s~s~dg~I~vwd~~~ 557 (730)
++..+++.+..|..+...+..
T Consensus 228 ~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 228 ETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp -------------------CEEEEEETTSEEEEEEGGG
T ss_pred cccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 345788889999988887754
No 419
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=24.29 E-value=1.2e+02 Score=25.20 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=45.4
Q ss_pred HHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhh--cccccccChhHHHHHHHHh
Q 004789 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~ll 127 (730)
......|+|++|+..+...-...+... .+++.+- . =+...|++++|+.++++- +.|- ++..+..|+.++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg-~---~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~ 96 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLG-A---CRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-H---HHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHH-H---HHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHH
Confidence 345678999999999987643433322 1222221 1 134679999999999985 4443 566667777666
Q ss_pred cc
Q 004789 128 AL 129 (730)
Q Consensus 128 ~~ 129 (730)
..
T Consensus 97 ~~ 98 (142)
T 2xcb_A 97 LQ 98 (142)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 420
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=23.82 E-value=1.3e+02 Score=23.21 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
......|+|++|+..+.......+... .+++.+-. -+...++..+|+..+++-+.-. ..+...+..++.+...
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~----~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSA----AYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH----HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHH----HHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 345678999999998876643333211 12222211 1345799999999999854433 2245556666665543
No 421
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=23.46 E-value=6e+02 Score=25.86 Aligned_cols=236 Identities=8% Similarity=-0.034 Sum_probs=116.3
Q ss_pred CCeeEEEEeCcE-EEEeeCCEEEEEEcCCc-e-----------EEEEEcCCCCCeEEEEEcCCCeEEEEECCCcEEEEec
Q 004789 447 DSISCFALRGSH-LFSASGGKISIFSLETF-Q-----------TLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCP 513 (730)
Q Consensus 447 ~~V~~l~~s~~~-l~s~sdg~I~vwd~~t~-~-----------~~~~~~~~~~~v~~i~~spdg~l~sgs~dg~I~iwd~ 513 (730)
..|..++..+.+ ++...||.|+.|-.... + ...........|..++.... ..+.-..||.|+.|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~-hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDS-HSACLLEDGRVFAWGS 153 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSS-EEEEEETTSCEEEEEC
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcC-eEEEEeCCCeEEEEeC
Confidence 346566655444 44444999999965431 1 00011112335666665433 4555578999999985
Q ss_pred --CC-Cce---------EEEEcCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCceec------------------c
Q 004789 514 --CT-KKT---------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC------------------S 563 (730)
Q Consensus 514 --~~-~~~---------~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~~~------------------~ 563 (730)
.. +++ ..........|..|+... .+.+.-..+|.|+.|-....-+.- .
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA--DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC--CeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 22 221 111111234577776653 355556789999999654311000 0
Q ss_pred eeecccccCCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce-----------eeeecCCCCCCCeEEEEEecC
Q 004789 564 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH-----------TSQLVPDKMDLPITYATYSCD 631 (730)
Q Consensus 564 ~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~spd 631 (730)
.+.. +..... ..|..++.... ..++. ..+|.|+.|-...... ....... ...|..++..
T Consensus 232 ~p~~-v~~~~~---~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia~G-- 302 (423)
T 3mvd_K 232 RPTQ-LIITRA---KPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIAGG-- 302 (423)
T ss_dssp SCEE-ECCTTC---CCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEEEC--
T ss_pred CCeE-EeecCC---ccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC--CCCeEEEEcc--
Confidence 0111 000011 24566655533 22333 4788888886432111 1111111 3346555543
Q ss_pred CCEEEEEEcCCeEEEEECCCce---------EEEEeecccccCCCCcccceeeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 004789 632 GKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 702 (730)
Q Consensus 632 g~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~~~~~las~s~Dg~I~iWd~ 702 (730)
..+.++-..||.|+.|-....- ........ . .- ...|. .|+... .+.+.-+.||.|+.|-.
T Consensus 303 ~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v---~-~l-~~~v~--~ia~G~---~hs~alt~~G~v~~wG~ 372 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV---K-KL-TEKIV--SVGCGE---VCSYAVTIDGKLYSWGS 372 (423)
T ss_dssp SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEEC---T-TC-CSCEE--EEEEET---TEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEe---c-cC-CCCEE--EEEcCC---CeEEEEcCCCCEEEECC
Confidence 4455666789999999754210 01111000 0 11 11344 555433 34444578999999987
Q ss_pred CC
Q 004789 703 LE 704 (730)
Q Consensus 703 ~~ 704 (730)
..
T Consensus 373 n~ 374 (423)
T 3mvd_K 373 GV 374 (423)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 422
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=23.11 E-value=1.4e+02 Score=25.76 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=60.3
Q ss_pred ccchhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhh
Q 004789 10 KDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFEL 84 (730)
Q Consensus 10 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 84 (730)
|+.-.-...+-..++..--|.++...+++=-.+..+ ...=.-....|++++|+..+.+.-.+.++.. .++|.+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~--~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY--TPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--HHHHHH
Confidence 334445556666777777788888888765544443 2222445678999999998865533443322 144433
Q ss_pred hhhhhHHHHhcCChHHHHHHHHhhcc
Q 004789 85 RKHKYCEALCRHERTEADSIFRKDLK 110 (730)
Q Consensus 85 ~~q~~lEll~~~~~~~A~~~l~~~l~ 110 (730)
- .=++..|+.++|+..+++-+.
T Consensus 111 g----~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 111 G----QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp H----HHHHHTTCHHHHHHHHHHHHH
T ss_pred H----HHHHHcCCHHHHHHHHHHHHH
Confidence 2 234577999999999998544
No 423
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.10 E-value=5.4e+02 Score=25.20 Aligned_cols=201 Identities=12% Similarity=0.049 Sum_probs=111.2
Q ss_pred CCCCCeeEeecCCCcEEEEeecCCCCCc----ceeeeecCCCCCCCcEEEEEEecCCCEEEEEeCCCcEEEeecCCCccc
Q 004789 341 LPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 416 (730)
Q Consensus 341 spdg~~lat~~~dg~i~lWd~~~~~~~~----~~~~~~l~~~gh~~~V~~v~fspdg~~L~s~s~dg~I~iWd~~~~~~~ 416 (730)
-|+..++++.+.+|.|+--......... -...+.+. -.+.+..+........++..+..|.++-.....-...
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCC
Confidence 4567889999999999987776442211 11122221 3466777777777778888899998776554321110
Q ss_pred cccccccceeeEecCCCCeeEeecccCCCCCCeeEEEE----e-CcEEEEee-CCEEEEEEcCCc-------eEEEEEcC
Q 004789 417 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLETF-------QTLATFAN 483 (730)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~----s-~~~l~s~s-dg~I~vwd~~t~-------~~~~~~~~ 483 (730)
-|. ..|..+...+.-.....|.++.. . +.+++..+ .|.++...+... .....+..
T Consensus 82 -----------~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 82 -----------SRA-SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp ------------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT
T ss_pred -----------Ccc-CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC
Confidence 000 01111000000012344444422 2 45666667 899988887533 22222333
Q ss_pred CCCCeEEEEEcCCC-eEEEEECCCcEEEEecCC----C---ceEEEEcC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 004789 484 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----K---KTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWD 554 (730)
Q Consensus 484 ~~~~v~~i~~spdg-~l~sgs~dg~I~iwd~~~----~---~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~dg~I~vwd 554 (730)
.+.+..+....++ .++..+.+|.+..+.... + +-+..+.- ....|.++..-.++..+++.+..|..+..+
T Consensus 150 -~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 150 -KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp -TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred -CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 4455555555444 788888999988887643 1 11222211 245666666655666788888999999888
Q ss_pred cCC
Q 004789 555 AVG 557 (730)
Q Consensus 555 ~~~ 557 (730)
+..
T Consensus 229 ~~e 231 (312)
T 1suu_A 229 MSK 231 (312)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 424
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=22.94 E-value=56 Score=27.87 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhHhcHH-HHHHHHHHhcCCcchHHHHHHHHhCCCHHHHHHHhcccccccCCccccc-hh-hhhh----
Q 004789 13 YTHLITLIMKFLEEENFK-ESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKK-MF-FELR---- 85 (730)
Q Consensus 13 ~~e~~~li~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~-~~-~~i~---- 85 (730)
.+++...|+..|.+.||- .+...+-++.|+..+ +++.|+..++.|.+.-..-+..+ ++ .-+.
T Consensus 21 ~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~~~ 89 (130)
T 2k9m_A 21 EQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYP 89 (130)
T ss_dssp HHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcCch
Confidence 356888899999999994 445555555554433 23445555555543321211110 11 1111
Q ss_pred -----hhhhHH-HHhcCChHH-HHHHHHhhccc
Q 004789 86 -----KHKYCE-ALCRHERTE-ADSIFRKDLKV 111 (730)
Q Consensus 86 -----~q~~lE-ll~~~~~~~-A~~~l~~~l~~ 111 (730)
-..+|| +|.++++.+ |+.++| .|.|
T Consensus 90 ~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P 121 (130)
T 2k9m_A 90 EEEEILKKALRDLKRGKKLKPEIKGKLS-RLRL 121 (130)
T ss_dssp TTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCS
T ss_pred hHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCC
Confidence 124677 777777554 666666 4443
No 425
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=22.87 E-value=1.2e+02 Score=24.80 Aligned_cols=72 Identities=14% Similarity=-0.016 Sum_probs=44.5
Q ss_pred HHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
.....|+|++|+..+.+.-.+.+... .+++.+ =.=++..|+..+|+..+.+-+.-- ..+...+..|+.++..
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNR----AACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH----hhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 35678999999998865422333321 122222 222446799999999999854322 2256677777776654
No 426
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.65 E-value=6e+02 Score=25.58 Aligned_cols=239 Identities=9% Similarity=0.029 Sum_probs=118.6
Q ss_pred CCCEEEEEeCCCcEEEeecCCCcccccc-ccccceeeEecCCCCeeEeecccCCCCCCeeEEEEe--CcEEEEee-CCEE
Q 004789 392 SGDFLVALTQTATHKLWKWQSNKQSLEE-ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 467 (730)
Q Consensus 392 dg~~L~s~s~dg~I~iWd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~l~s~s-dg~I 467 (730)
.....++...||.|..|-.......-.. ......|.. +. .-....+..++.+ ....+.-. +|.|
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~--------v~----~~~~~~~~~v~i~~G~~h~~al~~~G~v 128 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTL--------LE----SIQHVFIKKVAVNSGGKHCLALSSEGEV 128 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEE--------CG----GGTTSCEEEEEECTTCSEEEEEETTSCE
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEE--------cc----cccCCceeEEEECcCCCeEEEEcCCCCE
Confidence 3445666778999999975443221110 000000110 00 0122345556666 34444444 8999
Q ss_pred EEEEcCCc-----------eEEEEEcC-CCCCeEEEEEcCCCeEEEEECCCcEEEEecCCC-c----------eEEEEcC
Q 004789 468 SIFSLETF-----------QTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-K----------TKAKLKG 524 (730)
Q Consensus 468 ~vwd~~t~-----------~~~~~~~~-~~~~v~~i~~spdg~l~sgs~dg~I~iwd~~~~-~----------~~~~~~~ 524 (730)
+.|-.... .....+.. ....|..++.... ..++-..||.|+.|-.... + ....+..
T Consensus 129 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 129 YSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred EEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence 99965321 11112221 1225666665433 5555678999999975431 1 1112221
Q ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCce-------ecceeecccccCCCCCCCCeEEEEEecCCcEEEEEe
Q 004789 525 -HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 596 (730)
Q Consensus 525 -h~~~V~~l~~spd~~~l~s~s~dg~I~vwd~~~~~~-------~~~~~i~~~~~~h~~~~~~v~~l~~spdg~~l~~s~ 596 (730)
....|..++......+.+....||.|+.|-....-+ ....+.. +..-.. ..|..++.... ..++...
T Consensus 208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~-v~~~~~---~~v~~v~~G~~-hs~alt~ 282 (389)
T 3kci_A 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK-IDSLTG---LGVVKVECGSQ-FSVALTK 282 (389)
T ss_dssp GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE-CGGGTT---SCEEEEEEETT-EEEEEET
T ss_pred cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE-ecccCC---CcEEEEeCCCC-EEEEEeC
Confidence 234577777654345666677899999996543110 0011111 111111 24666665432 3344468
Q ss_pred cCcEEEEeCCCCce-----------eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004789 597 EGQIDVYEAPTLNH-----------TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 651 (730)
Q Consensus 597 dg~I~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~spdg~~l~sgs~dg~I~iwd~~~ 651 (730)
+|.|+.|-...... ...+.. .....|..++.. ....++-..||.|+.|-...
T Consensus 283 ~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CCeEEEEeCCCCCCCCCCCCccccCCeEecc-CCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 89999997532110 111111 113456666543 34555667899999997653
No 427
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=22.64 E-value=2.7e+02 Score=21.62 Aligned_cols=80 Identities=13% Similarity=0.262 Sum_probs=45.9
Q ss_pred HHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCC
Q 004789 23 FLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHE 97 (730)
Q Consensus 23 ~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~ 97 (730)
+.....|.++...+++-.....+ ...-.-....|+|++|+..+.......+... .+.+.+- . =+...|+
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la-~---~~~~~~~ 118 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLG-N---AYYKQGD 118 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-H---HHHTTTC
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHH-H---HHHHHcc
Confidence 34444577777776653322222 2333445678999999999876532322211 1222221 1 1346799
Q ss_pred hHHHHHHHHhh
Q 004789 98 RTEADSIFRKD 108 (730)
Q Consensus 98 ~~~A~~~l~~~ 108 (730)
.++|+.++++-
T Consensus 119 ~~~A~~~~~~~ 129 (136)
T 2fo7_A 119 YDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 428
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=22.25 E-value=2.3e+02 Score=26.36 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=63.5
Q ss_pred CccchhHHHHHHHHHHhHhcHHHHHHHHHHhcCCcch--------HHHHHHHHhCCCHHHHHHHhcccccc-cCCccccc
Q 004789 9 DKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--------VHRFGEIVMNGEWEKAEKYLSAFTKL-DDSNHSKK 79 (730)
Q Consensus 9 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~ 79 (730)
++.+-.....+-..++....|.++...+++=.....+ ...=.-....|+|++|+..+..+-.+ |.+.....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3445667778888888999999999988875433221 22223456789999999999876433 22222111
Q ss_pred hhhhhhhhhhHHH-----HhcCChHHHHHHHHhhccc
Q 004789 80 MFFELRKHKYCEA-----LCRHERTEADSIFRKDLKV 111 (730)
Q Consensus 80 ~~~~i~~q~~lEl-----l~~~~~~~A~~~l~~~l~~ 111 (730)
++|.+-. .|+++ ++.++..+|+..+++-+.-
T Consensus 91 a~~~lg~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAM-CYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHH-HHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 3333222 22221 2278899999999986543
No 429
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=22.23 E-value=1.5e+02 Score=24.05 Aligned_cols=89 Identities=17% Similarity=-0.008 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhh
Q 004789 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (730)
Q Consensus 15 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 89 (730)
+...+-..++..--|.++...+++=.....+ ...=.-....|++++|+..+...-.+.+... .+++.+-
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~la---- 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALA---- 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH----
Confidence 4566677778888888888888765544443 2222234568999999999876533433322 1332221
Q ss_pred HHHHhcCChHHHHHHHHhhc
Q 004789 90 CEALCRHERTEADSIFRKDL 109 (730)
Q Consensus 90 lEll~~~~~~~A~~~l~~~l 109 (730)
.=+...|+.++|+..+++-+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 12346688999999999754
No 430
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.18 E-value=5.1e+02 Score=24.57 Aligned_cols=149 Identities=10% Similarity=-0.051 Sum_probs=0.0
Q ss_pred CC-eEEEEECCCcEEEEecCCCceEEEEcCCCCCeEEEEEeCCCCEEEEEeCCCc---EEEEEcCCCceecceeeccccc
Q 004789 496 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ---LCVWDAVGWKKLCSKFLHSFQT 571 (730)
Q Consensus 496 dg-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~dg~---I~vwd~~~~~~~~~~~i~~~~~ 571 (730)
+. ..++.+.+|.|+--..........-....+.+..+........|+..+..|. +.++++..+ .....++.....
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r~~G~~i~~~i~ 79 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-RGQGEPLTGKLT 79 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-SSCCEEGGGTCC
T ss_pred CCCEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-CCCCeEeeeeec
Q ss_pred CCCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-------CCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcCC
Q 004789 572 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSG 642 (730)
Q Consensus 572 ~h~~~~~~v~~l~~spdg~~l~~-s~dg~I~iwd~~-------~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~sgs~dg 642 (730)
-... ..|.++....++.+++. +..|.++...+. .+.....+.. ...+..+... .++..|+..+.+|
T Consensus 80 L~~~--e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~---~d~lv~~~~~~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 80 LPPG--ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAG 154 (256)
T ss_dssp CCTT--CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT---TCCBCCCEECCCTTCEEEEEETTS
T ss_pred CCCC--CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC---CCEEEEEEEecCCCCEEEEEcCCC
Q ss_pred eEEEEECC
Q 004789 643 HVKVFDTS 650 (730)
Q Consensus 643 ~I~iwd~~ 650 (730)
.+..+...
T Consensus 155 ~~lrf~~~ 162 (256)
T 1zvt_A 155 RMLMFPVS 162 (256)
T ss_dssp EEEEEEGG
T ss_pred eEEEEEHH
No 431
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.98 E-value=1.4e+02 Score=22.82 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhccccccc--ChhHHHHHHHHhc
Q 004789 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVS--QNRIDCELAELLA 128 (730)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~--~~~~~~~l~~ll~ 128 (730)
-....|+|++|+..+.....+.+... .+++.+- .=+...++.++|+.++++-+.-. .. +...+..|+.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a----~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKG----KALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHH----HHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 34578999999998876532332211 1222221 11346789999999999854432 22 4555666666554
Q ss_pred c
Q 004789 129 L 129 (730)
Q Consensus 129 ~ 129 (730)
.
T Consensus 88 ~ 88 (112)
T 2kck_A 88 Y 88 (112)
T ss_dssp T
T ss_pred H
Confidence 3
No 432
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=21.61 E-value=1.4e+02 Score=23.84 Aligned_cols=73 Identities=14% Similarity=-0.012 Sum_probs=44.6
Q ss_pred HHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
......|+|++|+..+...-...+... .+++.+ =.-+...++.++|+.++++-+.-. ..+...+..|+.+...
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l----a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNR----AACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHH----HHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHH----HHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 345679999999998877633332211 122222 122456799999999999865432 2255666666665543
No 433
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.50 E-value=1.3e+02 Score=24.13 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=44.3
Q ss_pred HHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHhcc
Q 004789 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (730)
Q Consensus 51 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 129 (730)
.....|+|++|+..+...-.+.+... .+++.+ =.=++..|+.++|+..+++-+.-- ..+...+..|+.++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~----a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNR----AAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHH----HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 35678999999998876532333321 122222 222346799999999999854332 2256666777766654
No 434
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.46 E-value=1.6e+02 Score=22.20 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcc
Q 004789 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLK 110 (730)
Q Consensus 50 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~ 110 (730)
......|+|++|+..+...-...+.... .+++.+ =.. +...|+.++|+..+++-+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~l-g~~---~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKD-EAYYLM-GNA---YRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHH-HHHHHH-HHH---HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHH-HHH---HHHcCCHHHHHHHHHHHHh
Confidence 3456789999999988766433333210 022221 112 2357899999999998543
No 435
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=21.36 E-value=2.8e+02 Score=26.48 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcc
Q 004789 47 HRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLK 110 (730)
Q Consensus 47 ~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~ 110 (730)
..+...+..|++++|+.++.............+.....+...-.-.+..++.++|+..+++-+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 3466778899999999998776422222111111111111111112456789999999998765
No 436
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.21 E-value=2.9e+02 Score=25.00 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCC----cc--h--HHHHHHHHhCCCHHHHHHHhcccccccCCcccc-chhhhh
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKI----FF--N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK-KMFFEL 84 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~----~~--~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~~~i 84 (730)
.....+...++....|.++...|++=-.. .. + ...-......|+|++|+..+..+-...++.... .++|.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34556667788888899998888762211 11 1 233345667899999999988764332222111 123322
Q ss_pred hhhhhHH---------------HHhcCChHHHHHHHHhhcccc
Q 004789 85 RKHKYCE---------------ALCRHERTEADSIFRKDLKVF 112 (730)
Q Consensus 85 ~~q~~lE---------------ll~~~~~~~A~~~l~~~l~~~ 112 (730)
-..|.+ .++.++.++|+..+++-+.-.
T Consensus 85 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 85 -GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp -HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 222322 124578899999999865544
No 437
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=21.19 E-value=2.9e+02 Score=21.40 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=53.9
Q ss_pred HHHHHHHhHhcHHHHHHHHHHhcCCcch-----HHHHHHHHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHH
Q 004789 18 TLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEA 92 (730)
Q Consensus 18 ~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEl 92 (730)
.+...++....|.++...+++=-....+ ...-.-....|+|++|+..+.......+... .+++.+-. =+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~----~~ 90 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGL----AL 90 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH----HH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHH----HH
Confidence 3444445555677777766543222221 2233344678999999988866532322211 12222211 13
Q ss_pred HhcCChHHHHHHHHhhcccccccChhHHHHHHHHh
Q 004789 93 LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 93 l~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll 127 (730)
...++..+|+.++.+-+.-. ..+......|+.+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAE 124 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence 45688999999988754322 12344444554443
No 438
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=21.13 E-value=1.7e+02 Score=21.42 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=38.6
Q ss_pred HHhCCCHHHHHHHhcccccccCCccccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHh
Q 004789 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 52 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll 127 (730)
....|+|++|+..+...-...+... .+++.+- .=+...++.++|+..+++-+.-. ..+......|+.++
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~----~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELDPNNA--EAWYNLG----NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHH----HHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4567899999888765532322211 1222221 12345789999999999854322 12455555555443
No 439
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.21 E-value=3e+02 Score=28.54 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhHhcHHHHHHHHHHhcCCcc-----h---H-----HHHHHHHhCCCHHHHHHHhcccc-----cccCCc
Q 004789 14 THLITLIMKFLEEENFKESLQALEQESKIFF-----N---V-----HRFGEIVMNGEWEKAEKYLSAFT-----KLDDSN 75 (730)
Q Consensus 14 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~-----~---~-----~~~~~~i~~g~w~~~~~~l~~~~-----~~~~~~ 75 (730)
+++++.|.++-.+--|.++....++=-.+.. + + +...-....|+|++|+.+..+.- .++++-
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 4677777777666677777666655433322 1 1 22223456899999998875431 011111
Q ss_pred cccchhhhhhhhhhHHHHhcCChHHHHHHHHhhcccc
Q 004789 76 HSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (730)
Q Consensus 76 ~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~~ 112 (730)
.. +...++.--- =+...|++++|+.++++-+.-+
T Consensus 368 p~--~a~~l~nLa~-~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 368 PV--RGVQVMKVGK-LQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HH--HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHH
Confidence 10 1111111111 1335788999999998865554
No 440
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=20.08 E-value=1.2e+02 Score=28.60 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=55.3
Q ss_pred HHHHHHHHHhHhcHHHHHHHHHHhcCCcchHHHHHHHHhCCC---HH---------HHHHHhccc-ccccCCccccchhh
Q 004789 16 LITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGE---WE---------KAEKYLSAF-TKLDDSNHSKKMFF 82 (730)
Q Consensus 16 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~~~~~~~i~~g~---w~---------~~~~~l~~~-~~~~~~~~~~~~~~ 82 (730)
+|.-+++||++.|+. +=|=+-+|-...++.+++.+..|. ++ .+-..|+.+ ..+|+-. +-+
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePL----l~~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPL----LTY 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCT----TCT
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCC----cCH
Confidence 677788999998851 222222333334999999998874 21 122223222 1122221 223
Q ss_pred hhhhhhhHHHHhcCChHHHHHHHHhhcccccccChhHHHHHHHHh
Q 004789 83 ELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (730)
Q Consensus 83 ~i~~q~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ll 127 (730)
.+| ..|++.....+..+.+..++.-+..|-..+...++.|..+|
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L 156 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHL 156 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 333 35677777777777777777666655332334444443333
Done!