Query 004791
Match_columns 730
No_of_seqs 865 out of 4557
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 12:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-78 2.3E-83 692.8 68.9 611 79-719 57-683 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4E-75 8.8E-80 663.4 68.1 607 84-718 97-716 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.2E-72 1.1E-76 622.9 68.1 525 164-694 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 8.9E-71 1.9E-75 613.0 68.5 524 107-659 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.6E-65 9.9E-70 566.9 52.3 514 165-694 84-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 8.1E-64 1.7E-68 556.9 53.5 475 200-691 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-36 9.2E-41 351.9 76.8 610 84-717 272-895 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-34 4E-39 338.1 79.8 602 84-708 204-819 (899)
9 PRK11447 cellulose synthase su 100.0 5.5E-27 1.2E-31 274.4 73.4 604 85-714 40-732 (1157)
10 PRK11447 cellulose synthase su 100.0 2E-25 4.4E-30 261.2 70.4 586 84-690 73-744 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.3E-21 5.1E-26 216.3 67.3 553 85-693 56-710 (987)
12 KOG2002 TPR-containing nuclear 99.9 1.5E-21 3.3E-26 202.9 56.9 575 88-698 145-756 (1018)
13 KOG4626 O-linked N-acetylgluco 99.9 1.9E-23 4.1E-28 205.7 38.3 447 207-669 52-501 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 2.9E-22 6.4E-27 197.4 41.1 445 241-703 51-500 (966)
15 PRK09782 bacteriophage N4 rece 99.9 1.4E-19 2.9E-24 202.3 67.6 581 80-694 85-745 (987)
16 KOG2002 TPR-containing nuclear 99.9 3.4E-20 7.4E-25 192.9 54.0 536 165-711 161-734 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.8E-24 199.6 53.1 433 205-686 129-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 9.7E-19 2.1E-23 192.7 53.0 432 169-651 128-570 (615)
19 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.8E-25 196.3 36.3 299 389-694 46-354 (389)
20 PRK11788 tetratricopeptide rep 99.9 4.6E-20 1E-24 193.1 35.7 302 319-658 46-353 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.7E-23 189.7 47.7 328 279-616 48-380 (656)
22 PRK10049 pgaA outer membrane p 99.9 4E-18 8.7E-23 191.0 48.6 429 237-703 14-470 (765)
23 PRK15174 Vi polysaccharide exp 99.9 3E-18 6.5E-23 187.8 46.5 354 241-617 45-403 (656)
24 PRK10049 pgaA outer membrane p 99.9 6E-18 1.3E-22 189.6 48.7 415 202-659 14-461 (765)
25 PRK14574 hmsH outer membrane p 99.9 2.1E-16 4.5E-21 173.4 52.4 457 209-698 40-522 (822)
26 PRK14574 hmsH outer membrane p 99.9 5.4E-16 1.2E-20 170.1 54.2 453 173-659 39-518 (822)
27 KOG0495 HAT repeat protein [RN 99.8 2.8E-14 6.1E-19 142.7 58.5 591 88-713 266-871 (913)
28 KOG0495 HAT repeat protein [RN 99.8 5.5E-13 1.2E-17 133.6 61.7 505 164-695 376-886 (913)
29 KOG2003 TPR repeat-containing 99.8 2.3E-16 4.9E-21 150.5 34.6 498 167-712 200-713 (840)
30 KOG2076 RNA polymerase III tra 99.8 1.5E-13 3.2E-18 143.2 55.2 556 111-697 141-777 (895)
31 KOG4422 Uncharacterized conser 99.8 6.9E-14 1.5E-18 133.1 45.0 218 166-404 114-339 (625)
32 KOG4422 Uncharacterized conser 99.8 4.6E-14 1E-18 134.2 43.5 455 205-682 118-620 (625)
33 KOG2076 RNA polymerase III tra 99.8 1.2E-12 2.6E-17 136.6 55.5 360 85-474 151-552 (895)
34 KOG1915 Cell cycle control pro 99.8 4.3E-13 9.3E-18 129.4 47.7 466 171-651 76-584 (677)
35 KOG1915 Cell cycle control pro 99.7 1.4E-12 2.9E-17 126.0 47.9 469 202-685 72-583 (677)
36 KOG2003 TPR repeat-containing 99.7 2.8E-13 6.2E-18 129.7 38.5 457 175-681 244-716 (840)
37 KOG1155 Anaphase-promoting com 99.7 2.8E-12 6.1E-17 123.8 40.1 382 305-705 161-552 (559)
38 KOG1155 Anaphase-promoting com 99.7 1.3E-11 2.8E-16 119.3 41.8 385 268-686 159-552 (559)
39 KOG4318 Bicoid mRNA stability 99.7 1.8E-12 3.9E-17 134.5 37.4 522 164-724 21-596 (1088)
40 KOG1173 Anaphase-promoting com 99.6 1.2E-11 2.7E-16 122.6 40.5 285 411-703 242-532 (611)
41 KOG2047 mRNA splicing factor [ 99.6 1E-09 2.2E-14 110.5 53.7 526 110-675 103-711 (835)
42 KOG1173 Anaphase-promoting com 99.6 3.2E-11 7E-16 119.7 40.8 480 171-668 19-532 (611)
43 KOG0547 Translocase of outer m 99.6 1.1E-11 2.3E-16 120.6 36.4 222 458-686 336-565 (606)
44 PRK10747 putative protoheme IX 99.6 3.5E-12 7.6E-17 132.0 34.1 252 319-579 129-387 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 5.7E-12 1.2E-16 131.2 34.9 131 552-685 262-397 (409)
46 PRK10747 putative protoheme IX 99.6 7E-12 1.5E-16 129.8 35.2 289 356-685 97-388 (398)
47 TIGR00540 hemY_coli hemY prote 99.6 5.8E-12 1.2E-16 131.2 34.4 121 285-408 96-217 (409)
48 KOG2047 mRNA splicing factor [ 99.6 9.7E-09 2.1E-13 103.7 54.8 535 168-719 102-720 (835)
49 KOG0547 Translocase of outer m 99.6 2.9E-11 6.3E-16 117.6 35.7 223 423-651 336-565 (606)
50 PF13429 TPR_15: Tetratricopep 99.6 1E-14 2.2E-19 144.3 12.1 261 173-440 13-275 (280)
51 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 143.8 11.8 259 420-685 15-275 (280)
52 KOG1126 DNA-binding cell divis 99.6 1.8E-12 4E-17 131.2 26.7 200 482-687 420-620 (638)
53 COG2956 Predicted N-acetylgluc 99.6 1.7E-11 3.6E-16 113.2 30.0 287 390-686 47-346 (389)
54 KOG1126 DNA-binding cell divis 99.6 1.2E-12 2.6E-17 132.4 24.5 200 447-651 420-619 (638)
55 KOG3785 Uncharacterized conser 99.5 1.5E-10 3.2E-15 108.0 35.2 411 246-686 65-489 (557)
56 COG2956 Predicted N-acetylgluc 99.5 3.9E-11 8.5E-16 110.7 30.4 287 356-652 48-347 (389)
57 KOG4318 Bicoid mRNA stability 99.5 7.1E-10 1.5E-14 115.7 41.6 266 101-393 17-286 (1088)
58 COG3071 HemY Uncharacterized e 99.5 4.7E-10 1E-14 107.2 36.9 284 286-579 97-387 (400)
59 KOG1156 N-terminal acetyltrans 99.5 2.4E-09 5.2E-14 108.3 42.7 93 593-688 376-469 (700)
60 COG3071 HemY Uncharacterized e 99.5 2.7E-10 5.8E-15 108.8 33.0 293 321-651 97-389 (400)
61 KOG1156 N-terminal acetyltrans 99.5 7.8E-09 1.7E-13 104.7 45.0 456 181-650 20-509 (700)
62 KOG3785 Uncharacterized conser 99.5 2.8E-09 6E-14 99.7 38.7 453 178-662 32-498 (557)
63 KOG4162 Predicted calmodulin-b 99.5 2.6E-09 5.6E-14 110.3 41.2 486 180-686 239-782 (799)
64 KOG4162 Predicted calmodulin-b 99.4 1E-08 2.2E-13 106.1 41.4 128 521-651 653-782 (799)
65 KOG2376 Signal recognition par 99.4 2.9E-08 6.3E-13 99.6 41.0 445 175-649 19-517 (652)
66 KOG2376 Signal recognition par 99.4 2.7E-08 5.9E-13 99.8 40.2 222 206-443 15-254 (652)
67 TIGR02521 type_IV_pilW type IV 99.4 5.2E-10 1.1E-14 107.9 27.7 200 483-686 31-231 (234)
68 PRK12370 invasion protein regu 99.4 5.5E-10 1.2E-14 121.0 28.6 217 462-687 318-535 (553)
69 PRK12370 invasion protein regu 99.3 5.8E-10 1.3E-14 120.9 28.1 202 496-704 317-520 (553)
70 TIGR02521 type_IV_pilW type IV 99.3 8.2E-10 1.8E-14 106.5 26.1 200 517-720 30-230 (234)
71 KOG1129 TPR repeat-containing 99.3 1.9E-10 4.1E-15 106.2 19.5 235 451-693 226-462 (478)
72 KOG1174 Anaphase-promoting com 99.3 1.3E-07 2.9E-12 90.6 38.2 185 495-686 312-499 (564)
73 KOG1129 TPR repeat-containing 99.3 2E-10 4.3E-15 106.1 18.3 228 172-405 227-456 (478)
74 KOG3617 WD40 and TPR repeat-co 99.3 1.6E-07 3.5E-12 97.4 41.0 504 142-705 741-1379(1416)
75 KOG1174 Anaphase-promoting com 99.3 3.3E-07 7.1E-12 88.0 38.8 288 356-653 209-501 (564)
76 PF12569 NARP1: NMDA receptor- 99.3 1.9E-08 4E-13 105.1 33.4 306 281-616 12-333 (517)
77 KOG1840 Kinesin light chain [C 99.3 4.3E-09 9.2E-14 108.4 27.7 237 449-685 200-477 (508)
78 KOG1127 TPR repeat-containing 99.3 3.1E-07 6.7E-12 97.7 40.8 249 430-686 800-1066(1238)
79 PF12569 NARP1: NMDA receptor- 99.3 1.9E-08 4.1E-13 105.1 31.9 293 349-685 10-332 (517)
80 KOG1840 Kinesin light chain [C 99.2 3.1E-09 6.8E-14 109.4 25.6 197 454-650 247-477 (508)
81 KOG0985 Vesicle coat protein c 99.2 8.3E-06 1.8E-10 87.1 50.4 487 171-684 609-1220(1666)
82 KOG0985 Vesicle coat protein c 99.2 6.2E-06 1.3E-10 88.0 48.1 521 102-685 717-1306(1666)
83 KOG0548 Molecular co-chaperone 99.2 9.7E-08 2.1E-12 95.1 33.0 415 245-698 9-464 (539)
84 PF13041 PPR_2: PPR repeat fam 99.2 3.2E-11 7E-16 83.0 6.1 49 271-319 1-49 (50)
85 KOG1127 TPR repeat-containing 99.2 4.2E-07 9E-12 96.7 37.7 515 182-720 472-1034(1238)
86 COG3063 PilF Tfp pilus assembl 99.2 3.8E-08 8.3E-13 87.3 25.0 207 486-698 38-245 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.2 3.3E-08 7.2E-13 97.9 27.6 234 462-705 40-282 (296)
88 KOG3616 Selective LIM binding 99.2 1.5E-06 3.3E-11 89.2 39.0 224 420-683 739-962 (1636)
89 PF13041 PPR_2: PPR repeat fam 99.2 1.2E-10 2.6E-15 80.1 7.0 50 656-705 1-50 (50)
90 COG3063 PilF Tfp pilus assembl 99.1 6.6E-08 1.4E-12 85.8 24.5 208 450-663 37-245 (250)
91 KOG0548 Molecular co-chaperone 99.1 4.1E-07 8.8E-12 90.8 32.6 418 210-661 9-462 (539)
92 PRK11189 lipoprotein NlpI; Pro 99.1 5.8E-08 1.2E-12 96.2 26.7 119 217-337 40-161 (296)
93 KOG3617 WD40 and TPR repeat-co 99.1 3.7E-06 8E-11 87.7 39.1 361 167-578 725-1170(1416)
94 cd05804 StaR_like StaR_like; a 99.1 9.5E-07 2.1E-11 91.2 34.5 201 168-372 6-215 (355)
95 KOG3616 Selective LIM binding 99.0 6.9E-06 1.5E-10 84.6 37.9 191 247-471 741-931 (1636)
96 KOG4340 Uncharacterized conser 99.0 7.9E-07 1.7E-11 81.7 28.2 315 241-578 13-335 (459)
97 KOG4340 Uncharacterized conser 99.0 1.2E-06 2.6E-11 80.5 28.9 195 171-375 13-210 (459)
98 KOG1914 mRNA cleavage and poly 99.0 2.9E-05 6.2E-10 77.8 40.6 151 499-651 347-500 (656)
99 KOG1914 mRNA cleavage and poly 99.0 3.7E-05 8.1E-10 77.0 41.3 424 235-686 17-500 (656)
100 cd05804 StaR_like StaR_like; a 99.0 1.5E-06 3.2E-11 89.8 33.7 89 385-474 121-212 (355)
101 KOG0624 dsRNA-activated protei 99.0 3.8E-06 8.3E-11 78.9 30.7 310 342-686 37-369 (504)
102 KOG0624 dsRNA-activated protei 98.9 1.6E-05 3.5E-10 74.9 32.2 315 239-582 39-370 (504)
103 KOG1125 TPR repeat-containing 98.9 1.3E-07 2.8E-12 95.0 19.8 137 571-710 412-559 (579)
104 PRK04841 transcriptional regul 98.9 1E-05 2.2E-10 94.9 38.9 373 279-653 347-761 (903)
105 PRK04841 transcriptional regul 98.9 1.3E-05 2.8E-10 94.1 39.3 372 245-618 348-761 (903)
106 PF04733 Coatomer_E: Coatomer 98.8 2.3E-07 5E-12 90.4 17.0 150 491-651 110-264 (290)
107 PLN02789 farnesyltranstransfer 98.8 1.1E-05 2.3E-10 79.9 28.5 230 460-697 49-310 (320)
108 KOG1128 Uncharacterized conser 98.8 9.1E-07 2E-11 91.5 21.4 241 444-706 394-636 (777)
109 PF04733 Coatomer_E: Coatomer 98.8 3.2E-07 6.8E-12 89.5 17.3 253 424-694 12-270 (290)
110 PLN02789 farnesyltranstransfer 98.8 5.7E-06 1.2E-10 81.8 25.9 209 492-706 46-268 (320)
111 KOG1125 TPR repeat-containing 98.8 1.5E-06 3.3E-11 87.6 21.4 223 317-545 294-525 (579)
112 KOG2053 Mitochondrial inherita 98.7 0.00073 1.6E-08 72.3 49.1 453 181-651 22-535 (932)
113 KOG2053 Mitochondrial inherita 98.7 0.00091 2E-08 71.6 49.9 487 178-685 53-606 (932)
114 COG5010 TadD Flp pilus assembl 98.7 5.4E-06 1.2E-10 75.7 20.6 159 522-684 70-228 (257)
115 KOG1128 Uncharacterized conser 98.7 3.9E-06 8.4E-11 87.0 22.0 284 95-406 328-615 (777)
116 KOG1070 rRNA processing protei 98.7 1.7E-05 3.8E-10 87.8 27.2 228 447-678 1457-1691(1710)
117 PRK10370 formate-dependent nit 98.7 6.1E-06 1.3E-10 75.9 20.7 126 566-695 52-180 (198)
118 PF12854 PPR_1: PPR repeat 98.6 4.6E-08 1E-12 60.1 4.3 32 233-264 2-33 (34)
119 TIGR03302 OM_YfiO outer membra 98.6 6.2E-06 1.3E-10 79.3 21.0 186 482-687 32-232 (235)
120 PF12854 PPR_1: PPR repeat 98.6 5.8E-08 1.3E-12 59.7 4.1 32 268-299 2-33 (34)
121 KOG1070 rRNA processing protei 98.6 3.2E-05 7E-10 85.7 27.2 228 482-713 1457-1691(1710)
122 PRK10370 formate-dependent nit 98.6 1.2E-05 2.7E-10 73.9 20.5 124 531-658 52-178 (198)
123 COG5010 TadD Flp pilus assembl 98.6 1.5E-05 3.3E-10 72.8 20.2 160 487-650 70-229 (257)
124 PRK15179 Vi polysaccharide bio 98.6 2.4E-05 5.2E-10 85.5 25.2 133 517-652 85-217 (694)
125 PRK15179 Vi polysaccharide bio 98.5 5E-05 1.1E-09 83.0 26.8 182 479-670 82-267 (694)
126 PRK15359 type III secretion sy 98.5 7.5E-06 1.6E-10 71.2 16.6 91 559-651 30-120 (144)
127 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3.1E-10 76.8 20.0 188 166-372 31-232 (235)
128 PRK14720 transcript cleavage f 98.5 8.9E-05 1.9E-09 81.8 27.6 166 204-407 32-198 (906)
129 PRK15359 type III secretion sy 98.5 1.2E-05 2.6E-10 69.9 17.1 121 504-631 14-134 (144)
130 COG4783 Putative Zn-dependent 98.4 0.00019 4E-09 71.7 25.7 138 493-652 316-454 (484)
131 PRK14720 transcript cleavage f 98.4 5.1E-05 1.1E-09 83.7 24.0 169 237-442 30-198 (906)
132 KOG3081 Vesicle coat complex C 98.4 0.00011 2.4E-09 67.2 21.6 151 490-651 115-270 (299)
133 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.9E-10 69.3 15.6 117 576-697 6-122 (135)
134 COG4783 Putative Zn-dependent 98.4 0.00017 3.6E-09 72.0 23.5 154 521-697 309-463 (484)
135 TIGR02552 LcrH_SycD type III s 98.3 2.5E-05 5.5E-10 67.5 15.7 116 540-660 5-120 (135)
136 KOG3081 Vesicle coat complex C 98.3 0.00035 7.5E-09 64.0 22.6 86 388-477 147-236 (299)
137 KOG3060 Uncharacterized conser 98.3 0.0014 3.1E-08 59.7 24.4 158 490-651 59-219 (289)
138 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.7E-09 63.9 15.8 126 555-684 14-144 (145)
139 KOG3060 Uncharacterized conser 98.2 0.002 4.4E-08 58.7 23.1 188 427-618 26-221 (289)
140 KOG0553 TPR repeat-containing 98.1 6.2E-05 1.3E-09 70.3 12.2 102 598-704 91-193 (304)
141 KOG0550 Molecular chaperone (D 98.0 0.00087 1.9E-08 65.3 19.9 175 526-707 177-371 (486)
142 PF07079 DUF1347: Protein of u 98.0 0.024 5.2E-07 56.4 46.3 463 178-698 16-530 (549)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.5E-09 72.2 15.1 89 314-404 206-294 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00032 6.9E-09 71.0 16.2 123 487-615 173-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00051 1.1E-08 60.0 15.6 116 181-298 24-143 (145)
146 TIGR00756 PPR pentatricopeptid 97.9 1.8E-05 3.8E-10 49.5 4.1 31 276-306 3-33 (35)
147 KOG0550 Molecular chaperone (D 97.9 0.011 2.5E-07 57.9 24.4 91 492-583 258-351 (486)
148 TIGR00756 PPR pentatricopeptid 97.8 3.2E-05 7E-10 48.3 4.6 33 660-692 2-34 (35)
149 KOG2041 WD40 repeat protein [G 97.8 0.034 7.5E-07 58.1 27.9 380 235-685 689-1084(1189)
150 cd00189 TPR Tetratricopeptide 97.8 0.00052 1.1E-08 54.6 12.2 94 591-686 3-96 (100)
151 PLN03088 SGT1, suppressor of 97.8 0.00068 1.5E-08 69.0 15.4 89 561-651 10-98 (356)
152 PF12895 Apc3: Anaphase-promot 97.8 4.4E-05 9.6E-10 59.3 5.4 81 601-683 2-83 (84)
153 PRK15363 pathogenicity island 97.8 0.0009 2E-08 57.2 13.5 95 590-686 37-131 (157)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00092 2E-08 56.1 13.6 96 590-687 4-105 (119)
155 PF13812 PPR_3: Pentatricopept 97.7 6.4E-05 1.4E-09 46.5 4.6 32 660-691 3-34 (34)
156 PRK10153 DNA-binding transcrip 97.7 0.0022 4.7E-08 68.3 18.6 71 622-696 419-489 (517)
157 PF13812 PPR_3: Pentatricopept 97.7 5.6E-05 1.2E-09 46.8 4.1 30 275-304 3-32 (34)
158 cd00189 TPR Tetratricopeptide 97.7 0.00065 1.4E-08 54.1 11.7 91 559-651 6-96 (100)
159 KOG1130 Predicted G-alpha GTPa 97.7 0.00051 1.1E-08 66.7 12.2 132 555-686 197-343 (639)
160 PLN03088 SGT1, suppressor of 97.7 0.0011 2.4E-08 67.4 15.5 91 525-617 9-99 (356)
161 KOG0553 TPR repeat-containing 97.7 0.00051 1.1E-08 64.4 11.7 87 528-616 91-177 (304)
162 COG4700 Uncharacterized protei 97.7 0.011 2.4E-07 51.2 18.4 142 551-697 87-231 (251)
163 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0018 3.9E-08 54.3 14.2 98 555-652 4-105 (119)
164 PF14938 SNAP: Soluble NSF att 97.7 0.0031 6.7E-08 62.1 17.7 91 280-371 121-224 (282)
165 PRK15363 pathogenicity island 97.7 0.0017 3.8E-08 55.5 13.4 93 557-651 39-131 (157)
166 KOG2041 WD40 repeat protein [G 97.6 0.12 2.5E-06 54.4 30.4 205 200-438 689-903 (1189)
167 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.6E-08 67.2 13.3 117 271-387 64-182 (429)
168 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.4E-08 63.9 13.7 128 171-301 4-135 (280)
169 PF05843 Suf: Suppressor of fo 97.6 0.002 4.4E-08 63.1 14.5 129 520-651 3-135 (280)
170 PRK02603 photosystem I assembl 97.6 0.0039 8.5E-08 56.3 15.3 89 554-643 36-126 (172)
171 CHL00033 ycf3 photosystem I as 97.5 0.0021 4.5E-08 57.9 13.4 96 588-684 35-139 (168)
172 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.3E-09 44.3 3.4 26 276-301 3-28 (31)
173 PF10037 MRP-S27: Mitochondria 97.5 0.0013 2.8E-08 66.9 13.1 120 307-426 65-186 (429)
174 KOG1130 Predicted G-alpha GTPa 97.5 0.0022 4.7E-08 62.5 13.3 285 351-651 25-343 (639)
175 PRK10866 outer membrane biogen 97.5 0.037 8E-07 52.8 21.9 77 171-247 35-113 (243)
176 PRK02603 photosystem I assembl 97.5 0.006 1.3E-07 55.1 15.9 88 520-608 37-126 (172)
177 PF12895 Apc3: Anaphase-promot 97.5 0.00024 5.3E-09 55.1 5.8 79 217-297 3-82 (84)
178 PRK10153 DNA-binding transcrip 97.5 0.0066 1.4E-07 64.7 18.1 87 571-661 402-489 (517)
179 PF01535 PPR: PPR repeat; Int 97.5 0.00018 4E-09 43.3 3.7 28 380-407 2-29 (31)
180 PF14938 SNAP: Soluble NSF att 97.5 0.0037 8E-08 61.6 14.9 96 590-686 116-224 (282)
181 PF08579 RPM2: Mitochondrial r 97.4 0.002 4.3E-08 51.0 9.6 77 278-354 30-115 (120)
182 COG4235 Cytochrome c biogenesi 97.4 0.0081 1.8E-07 56.9 15.5 101 585-687 153-256 (287)
183 PF08579 RPM2: Mitochondrial r 97.4 0.0043 9.3E-08 49.1 11.4 80 627-706 29-117 (120)
184 COG4235 Cytochrome c biogenesi 97.4 0.009 2E-07 56.7 15.7 129 533-666 137-268 (287)
185 PF14559 TPR_19: Tetratricopep 97.4 0.00076 1.6E-08 49.8 7.0 62 635-699 3-64 (68)
186 COG4700 Uncharacterized protei 97.4 0.064 1.4E-06 46.7 18.9 66 166-231 87-152 (251)
187 PRK10866 outer membrane biogen 97.4 0.082 1.8E-06 50.5 22.2 59 279-338 38-99 (243)
188 CHL00033 ycf3 photosystem I as 97.3 0.0064 1.4E-07 54.7 13.9 94 273-367 35-137 (168)
189 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.6E-08 48.2 7.4 56 630-686 4-59 (65)
190 PF12688 TPR_5: Tetratrico pep 97.3 0.015 3.2E-07 48.1 14.0 89 595-685 8-102 (120)
191 PF12688 TPR_5: Tetratrico pep 97.3 0.02 4.3E-07 47.3 14.6 93 559-651 7-103 (120)
192 KOG2796 Uncharacterized conser 97.3 0.098 2.1E-06 48.3 20.0 139 520-661 179-322 (366)
193 PF13432 TPR_16: Tetratricopep 97.2 0.0014 2.9E-08 47.9 6.9 57 594-651 3-59 (65)
194 PF13414 TPR_11: TPR repeat; P 97.2 0.0014 3E-08 48.6 6.9 63 623-686 3-66 (69)
195 KOG2114 Vacuolar assembly/sort 97.2 0.21 4.6E-06 53.9 24.9 178 241-439 337-516 (933)
196 KOG2796 Uncharacterized conser 97.2 0.2 4.3E-06 46.4 23.6 164 532-705 163-331 (366)
197 PF14559 TPR_19: Tetratricopep 97.1 0.0015 3.2E-08 48.2 6.3 61 599-662 2-62 (68)
198 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.35 7.7E-06 48.4 41.7 146 553-704 397-546 (660)
199 PF13414 TPR_11: TPR repeat; P 97.1 0.0024 5.3E-08 47.2 7.2 64 587-651 2-66 (69)
200 PRK10803 tol-pal system protei 97.1 0.023 5E-07 54.6 15.5 99 589-687 144-246 (263)
201 PF04840 Vps16_C: Vps16, C-ter 97.1 0.38 8.1E-06 47.9 26.8 107 310-436 179-285 (319)
202 PF06239 ECSIT: Evolutionarily 97.0 0.018 3.8E-07 51.9 12.9 103 551-672 45-152 (228)
203 PF06239 ECSIT: Evolutionarily 97.0 0.013 2.7E-07 52.8 11.6 31 325-355 120-150 (228)
204 PF07079 DUF1347: Protein of u 97.0 0.49 1.1E-05 47.6 44.0 145 118-285 15-179 (549)
205 KOG1258 mRNA processing protei 97.0 0.63 1.4E-05 48.7 33.9 185 447-637 296-489 (577)
206 KOG1538 Uncharacterized conser 97.0 0.085 1.8E-06 54.9 18.6 22 169-190 557-578 (1081)
207 PF13525 YfiO: Outer membrane 96.8 0.075 1.6E-06 49.3 16.3 58 280-337 12-71 (203)
208 PF13525 YfiO: Outer membrane 96.8 0.13 2.7E-06 47.9 17.7 60 174-233 11-72 (203)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.66 1.4E-05 46.6 40.1 146 518-669 397-546 (660)
210 PF03704 BTAD: Bacterial trans 96.8 0.062 1.3E-06 46.9 14.6 116 564-697 17-140 (146)
211 COG3898 Uncharacterized membra 96.8 0.65 1.4E-05 45.7 32.3 120 490-617 270-392 (531)
212 KOG1258 mRNA processing protei 96.7 0.97 2.1E-05 47.4 34.9 184 481-672 295-489 (577)
213 PF13281 DUF4071: Domain of un 96.7 0.49 1.1E-05 47.5 21.6 163 523-687 146-334 (374)
214 PF13371 TPR_9: Tetratricopept 96.7 0.011 2.5E-07 44.2 8.2 54 632-686 4-57 (73)
215 PRK11906 transcriptional regul 96.7 0.13 2.9E-06 52.3 17.4 113 567-684 318-433 (458)
216 COG3898 Uncharacterized membra 96.6 0.87 1.9E-05 44.9 31.8 124 346-474 85-214 (531)
217 PF13371 TPR_9: Tetratricopept 96.5 0.015 3.3E-07 43.5 7.8 56 596-652 3-58 (73)
218 PRK10803 tol-pal system protei 96.4 0.072 1.6E-06 51.3 13.4 97 554-652 144-246 (263)
219 KOG1538 Uncharacterized conser 96.4 0.67 1.5E-05 48.6 20.4 99 241-368 559-657 (1081)
220 PF13424 TPR_12: Tetratricopep 96.4 0.0089 1.9E-07 45.5 5.8 61 625-685 7-73 (78)
221 PF13424 TPR_12: Tetratricopep 96.4 0.013 2.8E-07 44.5 6.6 63 589-651 6-74 (78)
222 PF03704 BTAD: Bacterial trans 96.3 0.12 2.6E-06 45.1 13.3 126 518-661 3-139 (146)
223 PRK15331 chaperone protein Sic 96.3 0.063 1.4E-06 46.4 10.6 88 282-371 46-133 (165)
224 PRK15331 chaperone protein Sic 96.3 0.37 8E-06 41.8 15.1 86 564-651 48-133 (165)
225 KOG0543 FKBP-type peptidyl-pro 96.2 0.1 2.2E-06 51.7 12.8 96 588-686 257-354 (397)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.054 1.2E-06 54.9 11.0 100 585-689 72-176 (453)
227 PF13281 DUF4071: Domain of un 96.1 1.5 3.3E-05 44.1 20.9 31 622-652 304-334 (374)
228 KOG2280 Vacuolar assembly/sort 96.1 2.7 5.8E-05 45.4 28.6 108 555-681 686-793 (829)
229 PRK11906 transcriptional regul 96.1 0.42 9.2E-06 48.8 17.0 138 569-711 274-426 (458)
230 COG3118 Thioredoxin domain-con 96.0 1 2.2E-05 43.0 18.1 148 210-361 141-290 (304)
231 KOG0543 FKBP-type peptidyl-pro 96.0 0.31 6.7E-06 48.5 15.0 96 274-371 258-354 (397)
232 KOG2610 Uncharacterized conser 95.9 0.22 4.9E-06 47.7 13.4 115 496-613 116-234 (491)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.1 2.3E-06 52.9 12.0 99 550-654 72-176 (453)
234 COG0457 NrfG FOG: TPR repeat [ 95.8 1.8 3.8E-05 41.0 30.6 201 484-687 60-265 (291)
235 PF12921 ATP13: Mitochondrial 95.8 0.25 5.4E-06 41.3 11.8 102 587-708 1-103 (126)
236 PF04840 Vps16_C: Vps16, C-ter 95.7 2.5 5.5E-05 42.1 31.6 63 170-246 2-64 (319)
237 COG3118 Thioredoxin domain-con 95.7 1.1 2.3E-05 42.8 16.6 51 319-370 145-195 (304)
238 COG1729 Uncharacterized protei 95.5 0.23 4.9E-06 46.8 11.8 96 591-687 145-244 (262)
239 KOG4555 TPR repeat-containing 95.5 0.32 7E-06 39.7 10.9 91 562-653 52-145 (175)
240 PF10300 DUF3808: Protein of u 95.5 1.1 2.3E-05 47.7 18.2 162 521-685 191-374 (468)
241 PF08631 SPO22: Meiosis protei 95.4 3 6.6E-05 40.9 25.1 52 179-231 4-64 (278)
242 PF09205 DUF1955: Domain of un 95.3 1.1 2.4E-05 36.9 13.3 139 530-690 14-152 (161)
243 PF04184 ST7: ST7 protein; In 95.2 2 4.4E-05 44.2 17.9 60 592-651 263-323 (539)
244 KOG2610 Uncharacterized conser 95.2 0.5 1.1E-05 45.4 12.8 151 215-369 115-273 (491)
245 KOG1941 Acetylcholine receptor 95.1 0.64 1.4E-05 45.2 13.5 47 423-469 16-64 (518)
246 smart00299 CLH Clathrin heavy 95.1 1.9 4.1E-05 37.1 15.8 85 172-264 11-95 (140)
247 smart00299 CLH Clathrin heavy 95.1 1.9 4.2E-05 37.1 15.8 43 278-321 12-54 (140)
248 COG4105 ComL DNA uptake lipopr 95.1 3.1 6.6E-05 39.1 20.0 54 284-337 45-100 (254)
249 COG4105 ComL DNA uptake lipopr 95.0 3.1 6.7E-05 39.1 21.4 64 628-694 172-238 (254)
250 PF04053 Coatomer_WDAD: Coatom 95.0 1.1 2.3E-05 47.0 16.2 156 179-368 272-427 (443)
251 KOG1585 Protein required for f 95.0 2.5 5.5E-05 39.0 16.2 54 591-645 193-249 (308)
252 COG4649 Uncharacterized protei 94.7 2.4 5.1E-05 36.9 14.3 123 179-301 69-195 (221)
253 KOG2114 Vacuolar assembly/sort 94.7 8.4 0.00018 42.4 28.2 141 176-334 376-516 (933)
254 KOG4555 TPR repeat-containing 94.7 0.71 1.5E-05 37.8 10.6 88 598-686 53-143 (175)
255 PF12921 ATP13: Mitochondrial 94.6 1 2.2E-05 37.8 12.0 50 550-599 49-99 (126)
256 PF04053 Coatomer_WDAD: Coatom 94.5 1.4 3.1E-05 46.0 15.7 132 519-683 296-427 (443)
257 PF09205 DUF1955: Domain of un 94.4 2.4 5.2E-05 35.0 13.5 62 312-374 90-151 (161)
258 PF13512 TPR_18: Tetratricopep 94.4 1.4 3E-05 37.4 12.3 53 565-617 22-76 (142)
259 COG1729 Uncharacterized protei 94.4 0.54 1.2E-05 44.4 11.0 88 285-372 153-244 (262)
260 COG0457 NrfG FOG: TPR repeat [ 94.3 4.8 0.0001 37.9 32.6 222 428-652 38-265 (291)
261 PF10300 DUF3808: Protein of u 94.3 8.9 0.00019 40.9 24.9 118 496-616 246-375 (468)
262 KOG2280 Vacuolar assembly/sort 94.0 11 0.00024 41.0 35.1 345 265-648 424-795 (829)
263 KOG1550 Extracellular protein 94.0 11 0.00025 41.1 27.7 95 380-478 290-394 (552)
264 KOG1920 IkappaB kinase complex 93.9 8.2 0.00018 44.3 20.2 53 350-405 972-1026(1265)
265 KOG1585 Protein required for f 93.9 5.4 0.00012 37.0 17.3 30 109-138 31-60 (308)
266 PF13512 TPR_18: Tetratricopep 93.9 2.2 4.7E-05 36.2 12.4 71 319-389 21-93 (142)
267 PF04184 ST7: ST7 protein; In 93.8 5.4 0.00012 41.2 17.2 58 558-615 264-322 (539)
268 KOG3941 Intermediate in Toll s 93.6 0.71 1.5E-05 43.3 9.8 120 585-723 64-189 (406)
269 PF13170 DUF4003: Protein of u 93.5 8.3 0.00018 38.0 19.8 131 536-668 80-227 (297)
270 PF13428 TPR_14: Tetratricopep 93.4 0.23 5E-06 32.5 4.9 26 626-651 4-29 (44)
271 PF08631 SPO22: Meiosis protei 93.4 8.6 0.00019 37.7 25.9 20 666-685 254-273 (278)
272 PF13428 TPR_14: Tetratricopep 93.2 0.33 7.1E-06 31.8 5.3 26 661-686 4-29 (44)
273 KOG1941 Acetylcholine receptor 93.1 9.8 0.00021 37.5 20.5 128 523-650 127-273 (518)
274 KOG1550 Extracellular protein 92.9 17 0.00036 39.8 27.2 179 289-479 228-428 (552)
275 PF10345 Cohesin_load: Cohesin 92.7 19 0.00042 40.0 41.1 190 91-300 39-252 (608)
276 COG3629 DnrI DNA-binding trans 92.7 1.5 3.3E-05 42.1 11.1 79 625-704 155-238 (280)
277 PF13176 TPR_7: Tetratricopept 92.4 0.32 6.9E-06 30.1 4.2 26 660-685 1-26 (36)
278 KOG3941 Intermediate in Toll s 92.3 1.3 2.7E-05 41.8 9.5 105 550-673 64-173 (406)
279 PRK09687 putative lyase; Provi 91.9 13 0.00029 36.3 26.7 50 200-253 34-83 (280)
280 COG4649 Uncharacterized protei 91.9 8.2 0.00018 33.8 14.3 123 494-616 69-195 (221)
281 COG4785 NlpI Lipoprotein NlpI, 91.8 10 0.00022 34.6 15.8 177 184-372 81-266 (297)
282 PF09613 HrpB1_HrpK: Bacterial 91.8 6.4 0.00014 34.2 12.6 51 600-652 22-73 (160)
283 KOG2063 Vacuolar assembly/sort 91.7 28 0.00061 39.6 25.4 37 528-564 601-637 (877)
284 COG2976 Uncharacterized protei 91.6 9.8 0.00021 34.1 15.5 92 595-688 96-189 (207)
285 COG3947 Response regulator con 91.4 14 0.0003 35.4 15.6 71 626-697 282-357 (361)
286 COG3629 DnrI DNA-binding trans 91.4 2.5 5.5E-05 40.6 11.0 77 590-667 155-236 (280)
287 PF13431 TPR_17: Tetratricopep 91.3 0.26 5.7E-06 30.0 2.9 20 658-677 13-32 (34)
288 PF04097 Nic96: Nup93/Nic96; 90.7 27 0.00058 38.8 19.7 43 278-321 116-158 (613)
289 PF07035 Mic1: Colon cancer-as 90.6 12 0.00025 33.1 15.4 133 225-371 16-148 (167)
290 PF13176 TPR_7: Tetratricopept 90.6 0.64 1.4E-05 28.8 4.2 26 625-650 1-26 (36)
291 KOG1920 IkappaB kinase complex 90.6 39 0.00085 39.2 27.8 134 521-682 911-1050(1265)
292 PF00515 TPR_1: Tetratricopept 90.5 0.75 1.6E-05 27.9 4.5 27 660-686 3-29 (34)
293 PF06552 TOM20_plant: Plant sp 90.3 3.3 7.1E-05 36.6 9.6 111 569-690 7-139 (186)
294 PF13170 DUF4003: Protein of u 90.1 21 0.00044 35.3 21.5 24 396-419 200-223 (297)
295 PF10602 RPN7: 26S proteasome 90.1 5.2 0.00011 36.0 11.3 63 169-231 37-101 (177)
296 COG1747 Uncharacterized N-term 90.0 27 0.00058 36.4 24.6 95 482-581 65-159 (711)
297 PF00515 TPR_1: Tetratricopept 89.9 0.81 1.8E-05 27.7 4.3 27 625-651 3-29 (34)
298 COG4785 NlpI Lipoprotein NlpI, 89.9 15 0.00033 33.5 18.7 178 497-687 79-266 (297)
299 PF13431 TPR_17: Tetratricopep 89.8 0.45 9.8E-06 29.0 2.9 32 611-643 2-33 (34)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 3.1 6.7E-05 32.2 7.8 63 640-703 24-86 (103)
301 PF10345 Cohesin_load: Cohesin 89.3 41 0.00088 37.5 41.0 194 167-370 29-252 (608)
302 PF10602 RPN7: 26S proteasome 89.2 6 0.00013 35.6 11.0 95 589-685 37-140 (177)
303 KOG0276 Vesicle coat complex C 89.1 3.3 7.1E-05 43.5 10.1 130 521-683 617-746 (794)
304 KOG2066 Vacuolar assembly/sort 89.1 40 0.00086 37.2 29.4 22 384-405 511-532 (846)
305 PF00637 Clathrin: Region in C 89.1 0.022 4.9E-07 49.5 -4.6 84 174-264 13-96 (143)
306 KOG4234 TPR repeat-containing 88.7 11 0.00023 33.9 11.5 87 563-651 105-196 (271)
307 COG3947 Response regulator con 88.6 24 0.00052 33.9 15.4 60 310-370 281-340 (361)
308 PF07719 TPR_2: Tetratricopept 88.5 1.4 3E-05 26.5 4.7 27 660-686 3-29 (34)
309 PF07719 TPR_2: Tetratricopept 88.3 1.2 2.7E-05 26.7 4.3 27 625-651 3-29 (34)
310 PF02284 COX5A: Cytochrome c o 87.9 2.9 6.3E-05 32.8 6.7 62 641-703 28-89 (108)
311 PF07575 Nucleopor_Nup85: Nup8 87.7 49 0.0011 36.5 19.8 148 538-703 390-540 (566)
312 KOG4648 Uncharacterized conser 87.3 3.2 6.8E-05 40.3 8.1 94 560-657 104-197 (536)
313 KOG0276 Vesicle coat complex C 87.1 10 0.00023 40.0 12.2 27 273-299 666-692 (794)
314 PF02259 FAT: FAT domain; Int 87.1 38 0.00082 34.5 25.3 65 517-581 145-212 (352)
315 KOG2066 Vacuolar assembly/sort 86.9 55 0.0012 36.2 31.4 72 281-358 364-438 (846)
316 PRK09687 putative lyase; Provi 86.3 35 0.00076 33.4 29.4 233 447-704 36-278 (280)
317 KOG1586 Protein required for f 86.1 29 0.00063 32.2 21.1 85 567-651 128-223 (288)
318 COG1747 Uncharacterized N-term 85.6 50 0.0011 34.5 25.0 91 451-546 69-159 (711)
319 KOG4648 Uncharacterized conser 85.2 6.7 0.00015 38.2 9.1 94 525-622 104-197 (536)
320 PF13374 TPR_10: Tetratricopep 85.1 2.4 5.1E-05 27.0 4.6 27 659-685 3-29 (42)
321 KOG4234 TPR repeat-containing 84.9 15 0.00032 33.1 10.3 89 527-617 104-197 (271)
322 PF06552 TOM20_plant: Plant sp 84.6 9.4 0.0002 33.8 9.0 111 534-654 7-138 (186)
323 PF09613 HrpB1_HrpK: Bacterial 84.1 28 0.00061 30.4 13.4 19 528-546 54-72 (160)
324 KOG1464 COP9 signalosome, subu 84.0 39 0.00085 32.0 19.1 185 461-646 40-254 (440)
325 PF13374 TPR_10: Tetratricopep 83.7 2.9 6.3E-05 26.5 4.6 28 624-651 3-30 (42)
326 KOG4570 Uncharacterized conser 83.5 8.2 0.00018 37.2 8.8 46 429-474 116-161 (418)
327 TIGR02561 HrpB1_HrpK type III 83.4 28 0.0006 29.9 12.9 19 633-651 54-72 (153)
328 KOG2396 HAT (Half-A-TPR) repea 83.4 62 0.0013 33.8 39.5 79 187-267 90-169 (568)
329 COG0790 FOG: TPR repeat, SEL1 82.8 52 0.0011 32.5 25.5 123 568-697 128-276 (292)
330 PF07035 Mic1: Colon cancer-as 82.6 34 0.00073 30.3 15.6 24 276-299 92-115 (167)
331 PF13174 TPR_6: Tetratricopept 82.3 2.1 4.6E-05 25.4 3.2 24 663-686 5-28 (33)
332 KOG2062 26S proteasome regulat 82.1 86 0.0019 34.5 34.5 121 527-651 510-634 (929)
333 KOG0403 Neoplastic transformat 82.0 65 0.0014 33.0 17.3 72 487-563 513-584 (645)
334 PF08424 NRDE-2: NRDE-2, neces 81.7 61 0.0013 32.6 18.1 118 570-689 48-185 (321)
335 PF02259 FAT: FAT domain; Int 81.5 65 0.0014 32.8 25.2 64 448-511 146-212 (352)
336 PF11207 DUF2989: Protein of u 81.2 25 0.00055 31.9 10.6 21 622-642 177-197 (203)
337 PF13181 TPR_8: Tetratricopept 81.1 2.9 6.3E-05 25.1 3.6 21 664-684 7-27 (34)
338 KOG4570 Uncharacterized conser 80.4 19 0.00041 34.9 10.0 48 603-650 115-162 (418)
339 PF13181 TPR_8: Tetratricopept 79.9 5.4 0.00012 23.9 4.5 28 624-651 2-29 (34)
340 KOG4077 Cytochrome c oxidase, 79.7 15 0.00032 30.2 7.7 61 642-703 68-128 (149)
341 COG4455 ImpE Protein of avirul 79.5 11 0.00024 34.4 7.8 75 590-667 3-81 (273)
342 TIGR03504 FimV_Cterm FimV C-te 79.4 3.5 7.5E-05 26.9 3.5 23 629-651 5-27 (44)
343 PF11207 DUF2989: Protein of u 79.1 22 0.00048 32.3 9.6 73 535-608 123-198 (203)
344 COG4455 ImpE Protein of avirul 78.9 17 0.00038 33.2 8.8 77 555-632 3-81 (273)
345 PF00637 Clathrin: Region in C 78.8 1.2 2.7E-05 38.5 1.8 84 209-299 13-96 (143)
346 KOG2396 HAT (Half-A-TPR) repea 78.2 93 0.002 32.6 37.8 98 585-686 456-558 (568)
347 PF04097 Nic96: Nup93/Nic96; 77.8 1.2E+02 0.0027 33.7 24.7 28 449-476 325-355 (613)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 77.6 18 0.0004 28.2 7.3 45 606-650 25-69 (103)
349 COG2976 Uncharacterized protei 77.1 57 0.0012 29.5 15.7 89 560-653 96-189 (207)
350 KOG2471 TPR repeat-containing 76.1 1E+02 0.0022 32.3 14.1 40 355-394 29-68 (696)
351 PF09986 DUF2225: Uncharacteri 76.1 60 0.0013 30.3 12.1 26 662-687 169-194 (214)
352 KOG0128 RNA-binding protein SA 75.7 1.4E+02 0.0031 33.4 33.5 64 167-231 112-178 (881)
353 PF02284 COX5A: Cytochrome c o 75.3 39 0.00085 26.8 8.9 47 606-652 28-74 (108)
354 COG2909 MalT ATP-dependent tra 74.8 1.6E+02 0.0034 33.5 27.9 225 319-543 426-684 (894)
355 PF08424 NRDE-2: NRDE-2, neces 73.9 1E+02 0.0022 31.0 17.8 26 629-654 160-185 (321)
356 PF13174 TPR_6: Tetratricopept 73.0 6.2 0.00013 23.3 3.4 24 628-651 5-28 (33)
357 COG2909 MalT ATP-dependent tra 72.8 1.7E+02 0.0038 33.1 29.5 224 388-614 425-685 (894)
358 COG0790 FOG: TPR repeat, SEL1 72.7 1E+02 0.0022 30.4 23.2 115 533-654 128-268 (292)
359 PF07721 TPR_4: Tetratricopept 72.6 5.4 0.00012 22.4 2.8 19 663-681 6-24 (26)
360 PF13929 mRNA_stabil: mRNA sta 70.9 1.1E+02 0.0023 29.8 16.0 65 584-648 198-263 (292)
361 TIGR02508 type_III_yscG type I 70.9 50 0.0011 26.1 8.8 52 246-303 47-98 (115)
362 TIGR02561 HrpB1_HrpK type III 69.9 72 0.0016 27.5 12.0 50 356-407 23-73 (153)
363 KOG1464 COP9 signalosome, subu 69.4 1.1E+02 0.0023 29.2 22.1 239 453-702 70-346 (440)
364 COG5159 RPN6 26S proteasome re 69.2 1.1E+02 0.0024 29.4 20.0 28 211-238 11-38 (421)
365 KOG0890 Protein kinase of the 68.9 3.4E+02 0.0074 34.9 35.3 314 208-548 1388-1732(2382)
366 PF07575 Nucleopor_Nup85: Nup8 67.6 2E+02 0.0043 31.7 19.6 23 204-227 150-172 (566)
367 PRK15180 Vi polysaccharide bio 66.4 1.7E+02 0.0037 30.5 25.5 119 250-372 301-420 (831)
368 TIGR02508 type_III_yscG type I 66.4 63 0.0014 25.5 8.5 51 597-653 48-98 (115)
369 COG5159 RPN6 26S proteasome re 66.0 1.3E+02 0.0028 29.0 16.9 52 454-505 9-67 (421)
370 PF07163 Pex26: Pex26 protein; 65.7 65 0.0014 31.0 9.6 87 210-296 90-181 (309)
371 PF07163 Pex26: Pex26 protein; 65.5 80 0.0017 30.4 10.2 87 455-541 90-181 (309)
372 TIGR03504 FimV_Cterm FimV C-te 65.4 14 0.0003 24.1 3.8 24 174-197 5-28 (44)
373 KOG4507 Uncharacterized conser 65.1 31 0.00066 36.6 8.1 100 530-631 619-718 (886)
374 KOG4507 Uncharacterized conser 64.8 35 0.00076 36.2 8.4 99 166-267 210-312 (886)
375 PF14853 Fis1_TPR_C: Fis1 C-te 64.2 34 0.00073 23.4 5.7 35 664-700 7-41 (53)
376 KOG0292 Vesicle coat complex C 63.0 2.7E+02 0.0059 31.7 21.5 108 599-706 1002-1132(1202)
377 COG5187 RPN7 26S proteasome re 62.5 1.5E+02 0.0033 28.6 13.0 99 342-442 114-221 (412)
378 KOG4642 Chaperone-dependent E3 62.3 1.4E+02 0.0031 28.1 11.0 117 528-648 20-142 (284)
379 KOG0376 Serine-threonine phosp 61.2 18 0.00039 37.3 5.7 103 561-668 12-115 (476)
380 smart00028 TPR Tetratricopepti 61.2 18 0.0004 20.3 3.9 19 631-649 9-27 (34)
381 COG5187 RPN7 26S proteasome re 61.1 1.2E+02 0.0027 29.2 10.5 119 587-707 114-241 (412)
382 PF10579 Rapsyn_N: Rapsyn N-te 61.1 27 0.00059 26.1 5.1 46 180-225 18-65 (80)
383 PHA02875 ankyrin repeat protei 60.9 2.2E+02 0.0047 29.8 17.3 14 349-362 138-151 (413)
384 KOG1308 Hsp70-interacting prot 60.9 6.1 0.00013 38.6 2.3 91 565-657 126-216 (377)
385 PF09986 DUF2225: Uncharacteri 60.7 1.5E+02 0.0032 27.7 11.9 50 604-653 141-195 (214)
386 PHA02875 ankyrin repeat protei 60.7 2.2E+02 0.0048 29.8 17.3 201 191-412 18-229 (413)
387 KOG2471 TPR repeat-containing 60.4 2.3E+02 0.0049 29.8 13.5 26 659-684 620-645 (696)
388 PF14689 SPOB_a: Sensor_kinase 60.0 22 0.00048 25.3 4.5 29 657-685 22-50 (62)
389 PF10579 Rapsyn_N: Rapsyn N-te 59.1 31 0.00067 25.8 5.1 46 635-680 18-65 (80)
390 KOG0687 26S proteasome regulat 58.5 2E+02 0.0042 28.5 14.2 96 344-441 105-209 (393)
391 PF09670 Cas_Cas02710: CRISPR- 57.9 1.9E+02 0.004 30.0 12.5 56 526-582 139-198 (379)
392 PRK13800 putative oxidoreducta 57.8 3.8E+02 0.0083 31.7 27.9 232 446-706 633-865 (897)
393 KOG4642 Chaperone-dependent E3 57.4 1E+02 0.0022 28.9 9.1 119 562-684 19-143 (284)
394 KOG3364 Membrane protein invol 56.4 1.2E+02 0.0027 25.6 11.1 23 664-686 77-99 (149)
395 PF11848 DUF3368: Domain of un 55.7 48 0.001 22.1 5.2 33 669-701 13-45 (48)
396 KOG0530 Protein farnesyltransf 55.2 2E+02 0.0043 27.6 14.4 173 527-705 52-232 (318)
397 KOG2908 26S proteasome regulat 55.1 1.6E+02 0.0036 29.2 10.5 77 558-634 80-167 (380)
398 PF13929 mRNA_stabil: mRNA sta 54.7 2.1E+02 0.0047 27.8 17.6 113 253-365 143-260 (292)
399 PF09477 Type_III_YscG: Bacter 54.2 1.1E+02 0.0025 24.5 8.9 78 219-303 22-99 (116)
400 KOG0376 Serine-threonine phosp 54.0 28 0.0006 36.1 5.6 105 525-634 11-116 (476)
401 PF04910 Tcf25: Transcriptiona 53.4 2.7E+02 0.0058 28.6 17.3 152 464-616 10-221 (360)
402 cd08819 CARD_MDA5_2 Caspase ac 53.0 99 0.0021 23.8 7.0 16 635-650 48-63 (88)
403 PF10155 DUF2363: Uncharacteri 52.9 1.4E+02 0.003 25.1 12.8 46 87-139 3-48 (126)
404 PF11663 Toxin_YhaV: Toxin wit 52.7 14 0.0003 30.9 2.7 31 669-701 106-136 (140)
405 KOG1308 Hsp70-interacting prot 51.5 19 0.00042 35.4 3.9 120 528-652 124-244 (377)
406 PRK10941 hypothetical protein; 51.5 2.2E+02 0.0048 27.6 11.2 58 558-616 186-243 (269)
407 PF12862 Apc5: Anaphase-promot 51.3 99 0.0021 24.2 7.4 23 629-651 47-69 (94)
408 PF09477 Type_III_YscG: Bacter 51.2 1.3E+02 0.0028 24.2 8.3 79 323-408 21-99 (116)
409 KOG0551 Hsp90 co-chaperone CNS 51.0 2.7E+02 0.0057 27.8 11.7 89 560-649 88-179 (390)
410 KOG4077 Cytochrome c oxidase, 50.6 1.1E+02 0.0024 25.4 7.3 46 607-652 68-113 (149)
411 KOG3364 Membrane protein invol 49.3 1.6E+02 0.0036 24.9 9.5 66 586-651 30-99 (149)
412 PF11663 Toxin_YhaV: Toxin wit 49.1 22 0.00047 29.8 3.3 31 180-212 107-137 (140)
413 KOG0292 Vesicle coat complex C 48.7 4.7E+02 0.01 30.0 23.7 101 208-335 625-725 (1202)
414 PF14689 SPOB_a: Sensor_kinase 48.6 45 0.00098 23.7 4.5 29 623-651 23-51 (62)
415 PF10366 Vps39_1: Vacuolar sor 47.6 1.4E+02 0.0029 24.3 7.7 26 276-301 42-67 (108)
416 PF10366 Vps39_1: Vacuolar sor 47.3 1.1E+02 0.0024 24.8 7.2 26 311-336 42-67 (108)
417 COG2812 DnaX DNA polymerase II 46.8 4.1E+02 0.0088 28.7 13.2 53 86-140 177-229 (515)
418 PF11846 DUF3366: Domain of un 46.7 57 0.0012 29.8 6.2 32 655-686 141-172 (193)
419 KOG1586 Protein required for f 46.2 2.6E+02 0.0057 26.3 23.5 21 564-584 165-185 (288)
420 PF14853 Fis1_TPR_C: Fis1 C-te 46.1 79 0.0017 21.6 5.2 27 629-657 7-33 (53)
421 KOG0687 26S proteasome regulat 46.0 3.1E+02 0.0068 27.2 13.1 152 548-703 65-226 (393)
422 PF12862 Apc5: Anaphase-promot 45.9 87 0.0019 24.5 6.3 70 634-703 9-87 (94)
423 PRK13184 pknD serine/threonine 45.5 5.7E+02 0.012 30.1 26.2 345 277-652 479-869 (932)
424 KOG2659 LisH motif-containing 45.0 2.6E+02 0.0055 26.2 9.7 19 596-614 72-90 (228)
425 KOG4521 Nuclear pore complex, 44.9 4.8E+02 0.01 31.0 13.5 84 240-325 985-1071(1480)
426 PF09454 Vps23_core: Vps23 cor 44.6 41 0.0009 24.2 3.8 51 656-707 6-56 (65)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 44.5 1.9E+02 0.0041 24.2 9.0 43 641-683 81-124 (126)
428 PF14669 Asp_Glu_race_2: Putat 44.2 2.5E+02 0.0054 25.5 14.0 25 453-477 137-161 (233)
429 PF00244 14-3-3: 14-3-3 protei 44.1 92 0.002 29.6 7.3 57 594-650 7-64 (236)
430 KOG3807 Predicted membrane pro 43.9 3.3E+02 0.0072 26.9 11.3 107 565-686 228-339 (556)
431 cd00280 TRFH Telomeric Repeat 43.2 1.6E+02 0.0034 26.5 7.7 20 632-651 120-139 (200)
432 cd08819 CARD_MDA5_2 Caspase ac 43.1 1.5E+02 0.0033 22.8 7.5 66 572-643 21-86 (88)
433 PF11846 DUF3366: Domain of un 43.0 55 0.0012 29.9 5.6 56 85-140 120-175 (193)
434 COG2178 Predicted RNA-binding 42.8 2.6E+02 0.0057 25.4 9.3 17 390-406 133-149 (204)
435 PF11848 DUF3368: Domain of un 42.6 1E+02 0.0022 20.5 5.2 32 634-665 13-44 (48)
436 PRK11619 lytic murein transgly 42.6 5.4E+02 0.012 28.9 36.8 116 322-440 255-373 (644)
437 KOG0991 Replication factor C, 41.5 3.1E+02 0.0067 25.8 13.5 130 520-658 132-273 (333)
438 KOG0414 Chromosome condensatio 40.2 7.2E+02 0.016 29.7 14.8 30 569-598 573-602 (1251)
439 PRK11619 lytic murein transgly 39.8 5.9E+02 0.013 28.6 39.3 118 461-581 254-374 (644)
440 PRK10941 hypothetical protein; 39.4 3.7E+02 0.008 26.2 11.3 60 592-652 185-244 (269)
441 PF08542 Rep_fac_C: Replicatio 39.2 1.7E+02 0.0038 22.3 7.4 18 637-654 18-35 (89)
442 PF11817 Foie-gras_1: Foie gra 38.8 2E+02 0.0044 27.5 8.9 58 627-684 182-244 (247)
443 PF15297 CKAP2_C: Cytoskeleton 38.4 3.7E+02 0.0081 27.0 10.3 64 639-704 119-186 (353)
444 KOG0128 RNA-binding protein SA 38.3 6.5E+02 0.014 28.7 37.0 80 202-284 112-194 (881)
445 PRK09857 putative transposase; 38.3 2.1E+02 0.0046 28.2 9.0 58 634-692 217-274 (292)
446 PF09670 Cas_Cas02710: CRISPR- 37.8 4.8E+02 0.01 27.0 16.1 56 491-547 139-198 (379)
447 PRK07003 DNA polymerase III su 37.3 6.9E+02 0.015 28.7 17.3 97 91-201 182-278 (830)
448 KOG2908 26S proteasome regulat 36.0 4.6E+02 0.01 26.3 11.1 78 521-598 78-166 (380)
449 smart00386 HAT HAT (Half-A-TPR 36.0 86 0.0019 17.8 4.0 14 603-616 2-15 (33)
450 PF13762 MNE1: Mitochondrial s 36.0 2.9E+02 0.0062 23.9 11.3 81 626-706 42-128 (145)
451 PF04190 DUF410: Protein of un 35.9 4.1E+02 0.009 25.7 19.4 25 517-541 89-113 (260)
452 PRK14956 DNA polymerase III su 35.7 5.8E+02 0.013 27.3 12.9 39 202-240 247-285 (484)
453 PRK10564 maltose regulon perip 35.5 86 0.0019 30.6 5.5 29 592-620 261-289 (303)
454 KOG2063 Vacuolar assembly/sort 35.4 7.7E+02 0.017 28.7 20.0 115 276-390 507-638 (877)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 35.3 2.7E+02 0.0058 23.3 9.3 19 313-331 104-122 (126)
456 PF04190 DUF410: Protein of un 35.3 4.2E+02 0.0092 25.6 17.4 83 236-337 88-170 (260)
457 KOG1924 RhoA GTPase effector D 34.7 40 0.00086 37.0 3.5 14 87-100 620-633 (1102)
458 KOG2062 26S proteasome regulat 34.7 7.1E+02 0.015 28.0 36.8 27 346-372 213-239 (929)
459 COG5108 RPO41 Mitochondrial DN 34.5 2.5E+02 0.0054 30.8 9.0 75 523-600 33-115 (1117)
460 PF10255 Paf67: RNA polymerase 34.3 4.8E+02 0.01 27.1 10.9 61 275-335 124-191 (404)
461 PF13762 MNE1: Mitochondrial s 34.1 3.1E+02 0.0067 23.7 10.8 81 591-671 42-128 (145)
462 PF14561 TPR_20: Tetratricopep 34.1 2.2E+02 0.0049 22.1 8.4 31 622-652 21-51 (90)
463 KOG0530 Protein farnesyltransf 33.2 4.5E+02 0.0098 25.3 19.3 128 496-627 56-185 (318)
464 KOG0890 Protein kinase of the 32.9 1.3E+03 0.027 30.4 35.3 59 555-616 1672-1730(2382)
465 PHA02537 M terminase endonucle 32.2 4.2E+02 0.0091 25.0 9.3 132 575-706 70-230 (230)
466 PF11817 Foie-gras_1: Foie gra 32.0 2.2E+02 0.0047 27.3 7.9 22 345-366 220-241 (247)
467 cd00280 TRFH Telomeric Repeat 32.0 2.9E+02 0.0064 24.9 7.6 23 209-231 117-139 (200)
468 KOG4567 GTPase-activating prot 31.9 2.3E+02 0.0051 27.8 7.6 57 573-634 263-319 (370)
469 KOG2659 LisH motif-containing 31.8 4.4E+02 0.0095 24.7 11.8 99 585-685 23-130 (228)
470 KOG0545 Aryl-hydrocarbon recep 31.7 4.6E+02 0.01 25.0 13.2 61 625-686 232-292 (329)
471 COG0735 Fur Fe2+/Zn2+ uptake r 30.9 2.3E+02 0.005 24.4 7.1 65 645-710 8-72 (145)
472 PRK09857 putative transposase; 30.5 4.1E+02 0.0088 26.3 9.6 65 592-657 210-274 (292)
473 PRK15180 Vi polysaccharide bio 30.4 6.7E+02 0.014 26.4 30.4 122 215-340 301-423 (831)
474 PF14561 TPR_20: Tetratricopep 30.3 2.6E+02 0.0057 21.7 8.5 31 307-337 21-51 (90)
475 COG5108 RPO41 Mitochondrial DN 29.8 2.7E+02 0.0057 30.6 8.3 75 208-285 33-115 (1117)
476 PF11838 ERAP1_C: ERAP1-like C 29.5 5.8E+02 0.012 25.4 18.5 216 108-333 17-262 (324)
477 PRK13342 recombination factor 29.5 6.8E+02 0.015 26.2 19.4 20 602-621 244-263 (413)
478 PRK10564 maltose regulon perip 29.4 1.1E+02 0.0024 29.9 5.2 30 626-655 260-289 (303)
479 KOG1839 Uncharacterized protei 28.9 8.2E+02 0.018 29.6 12.6 156 526-681 940-1122(1236)
480 smart00101 14_3_3 14-3-3 homol 28.6 5.3E+02 0.011 24.7 10.2 58 594-651 7-67 (244)
481 KOG4814 Uncharacterized conser 27.5 6.7E+02 0.015 27.6 10.6 95 519-616 356-456 (872)
482 PF04762 IKI3: IKI3 family; I 27.5 5.2E+02 0.011 30.6 11.1 102 625-726 814-921 (928)
483 TIGR02710 CRISPR-associated pr 27.5 7E+02 0.015 25.7 11.0 128 243-371 135-274 (380)
484 KOG0551 Hsp90 co-chaperone CNS 27.5 5.4E+02 0.012 25.8 9.3 94 521-615 84-180 (390)
485 COG4941 Predicted RNA polymera 27.0 6.6E+02 0.014 25.2 11.1 115 534-651 272-393 (415)
486 KOG3636 Uncharacterized conser 26.9 5.5E+02 0.012 26.7 9.5 112 609-721 169-288 (669)
487 COG0735 Fur Fe2+/Zn2+ uptake r 26.7 2.9E+02 0.0063 23.8 7.0 43 334-377 12-54 (145)
488 KOG3677 RNA polymerase I-assoc 26.6 7.4E+02 0.016 25.7 10.3 61 274-335 236-299 (525)
489 COG4259 Uncharacterized protei 26.1 3.4E+02 0.0073 21.6 6.9 57 641-699 55-111 (121)
490 PF15297 CKAP2_C: Cytoskeleton 26.0 7E+02 0.015 25.2 10.1 63 605-669 120-186 (353)
491 PF03745 DUF309: Domain of unk 26.0 2.5E+02 0.0054 20.0 5.5 17 215-231 11-27 (62)
492 PF09454 Vps23_core: Vps23 cor 25.6 1.6E+02 0.0034 21.3 4.2 48 271-319 6-53 (65)
493 PF00244 14-3-3: 14-3-3 protei 25.6 5.9E+02 0.013 24.2 12.2 58 174-231 7-65 (236)
494 PRK08691 DNA polymerase III su 25.3 1E+03 0.022 26.9 12.5 84 568-654 179-276 (709)
495 KOG1839 Uncharacterized protei 25.3 6.5E+02 0.014 30.4 11.0 23 273-295 973-995 (1236)
496 KOG2422 Uncharacterized conser 25.1 9.2E+02 0.02 26.3 17.2 56 525-580 349-405 (665)
497 KOG2034 Vacuolar sorting prote 25.0 1.1E+03 0.024 27.2 26.9 256 246-533 366-643 (911)
498 KOG0403 Neoplastic transformat 25.0 8.2E+02 0.018 25.6 26.8 75 591-670 512-586 (645)
499 PF14669 Asp_Glu_race_2: Putat 24.9 5.4E+02 0.012 23.5 14.5 84 274-367 108-205 (233)
500 PF09868 DUF2095: Uncharacteri 24.6 3E+02 0.0065 22.4 5.8 30 559-589 67-96 (128)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-78 Score=692.76 Aligned_cols=611 Identities=21% Similarity=0.283 Sum_probs=575.3
Q ss_pred hhhhhccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc---------------ccChh
Q 004791 79 ISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKS---------------CSLDK 143 (730)
Q Consensus 79 ~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~---------------~~~~~ 143 (730)
+...+...+.++.|+.+|+.+.. .|.+|+..+|..++..+.+.+.++.+.+++..+++. +.+.+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 33444567889999999999864 567899999999999999999999999888665543 34455
Q ss_pred hHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004791 144 EILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAE 223 (730)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 223 (730)
+...++.+|.+|. .+|+++||.+|.+|++.|++++|+.+|++|...|+.||.+||+.++++|++.+++..+.
T Consensus 136 ~~~~A~~~f~~m~--------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 136 ELVHAWYVFGKMP--------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred ChHHHHHHHhcCC--------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 6667777777775 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004791 224 LYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD 303 (730)
Q Consensus 224 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 303 (730)
+++..|.+.|+.||+.++|+|+.+|++.|++++|.++|++|.. +|.++||++|.+|++.|++++|+++|++|.+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 304 CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNA 383 (730)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 383 (730)
+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|++
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 69999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 384 LIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 463 (730)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLER 543 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (730)
+++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|.++.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999875 5788999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 544 MLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV 623 (730)
Q Consensus 544 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 623 (730)
+.+.|+.+|..++++|+++|++.|++++|.++|+++ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMN-REGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH 702 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 702 (730)
.||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++| .++||..+|.+|+.+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~a 666 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 999999999999999999999999999 6899999999999999999999999999999999 479999999999999
Q ss_pred HHcCChhhhhhhccchh
Q 004791 703 LSNKKVDERKQQCDGIL 719 (730)
Q Consensus 703 l~~~~~~e~~~~~~~~l 719 (730)
+...++.+.++.+-+.+
T Consensus 667 c~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 667 CRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHcCChHHHHHHHHHH
Confidence 99888887766554443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-75 Score=663.35 Aligned_cols=607 Identities=17% Similarity=0.217 Sum_probs=535.4
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHH-----------HHHHHcccChhhHHHHHHHH
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIV-----------FLMLKSCSLDKEILFVLDFL 152 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~~~ 152 (730)
...++...+..++..+.+ .+..++...++.+++.|++.|+++.|.+++ ..++..+...+....++++|
T Consensus 97 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f 175 (857)
T PLN03077 97 EWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLY 175 (857)
T ss_pred hhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHH
Confidence 345667788888887764 355678889999999999999999998875 44566777778888889999
Q ss_pred HHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004791 153 RRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 232 (730)
.+|...| +.||.++|+.+++++++.++++.+.+++..|++.|+.||..+++.++.+|++.|++++|..+|++|..
T Consensus 176 ~~M~~~g----~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 250 (857)
T PLN03077 176 HRMLWAG----VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR- 250 (857)
T ss_pred HHHHHcC----CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 9888655 78999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 004791 233 GLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYT 312 (730)
Q Consensus 233 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 312 (730)
+|..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+
T Consensus 251 ---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 ---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred ---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG 392 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 392 (730)
+++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999886 36888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 004791 393 LMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLH 472 (730)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 472 (730)
++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865 578899999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004791 473 LINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN 552 (730)
Q Consensus 473 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 552 (730)
+|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCC
Confidence 9976 5889999999999999999999999999999999999999999999999999999999999999887 478
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMV-SLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~ 631 (730)
..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.+++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 6788999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCChhh
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFLIKHLSNKKVDE 710 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l~~~~~~e 710 (730)
+|++.|++++|.+++++|. +.||..+|.+|+.+|...|+.+.+....+++.+ ++|+.. .|..|.+.|...|..+
T Consensus 634 ~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChH
Confidence 9999999999999999884 689999999999999999999999888888876 466554 4555666777777766
Q ss_pred hhhhccch
Q 004791 711 RKQQCDGI 718 (730)
Q Consensus 711 ~~~~~~~~ 718 (730)
++.++-+.
T Consensus 709 ~a~~vr~~ 716 (857)
T PLN03077 709 EVARVRKT 716 (857)
T ss_pred HHHHHHHH
Confidence 65544433
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-72 Score=622.86 Aligned_cols=525 Identities=18% Similarity=0.282 Sum_probs=501.8
Q ss_pred cccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMV-VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356788899999999999999999999999999986 46777888999999999999999999999864 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLE--KGLFPNVVTYNALIDGYCKEGLMEAALQI 400 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (730)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 004791 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV 480 (730)
Q Consensus 401 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 480 (730)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHC
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----E-------------------GDFDHAHRLLDQMVSL 617 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~ 617 (730)
.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876432 1 2246799999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 618 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|.+.|+.|+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999888889999999999998432 468999999999999999985
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-71 Score=612.98 Aligned_cols=524 Identities=20% Similarity=0.277 Sum_probs=487.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHH
Q 004791 107 HSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDE 186 (730)
Q Consensus 107 ~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (730)
++...|..++..+++.|++++|.++++.|..... ++++..+++.++..|.+.|.+++
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-----------------------v~~~~v~~~~li~~~~~~g~~~e 424 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-----------------------LDMDKIYHAKFFKACKKQRAVKE 424 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-----------------------CCchHHHHHHHHHHHHHCCCHHH
Confidence 4566777788888888888888777766653211 35678888999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchh
Q 004791 187 MKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPK 266 (730)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (730)
|+.+|+.|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 425 Al~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 425 AFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 9999998864 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChh
Q 004791 267 KGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA--RGCEPNVH 344 (730)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ 344 (730)
.|+.||.++|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 67899999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 004791 345 TYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFC 424 (730)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 424 (730)
+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004791 425 KRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQV 504 (730)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 504 (730)
+.|++++|.+++++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c--------------
Q 004791 505 LFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----E-------------- 566 (730)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------- 566 (730)
+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ .
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 567 -----RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 567 -----~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 1246799999999999999999999999999999999999999999998888889999999999998543 468
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 004791 642 AEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~ 659 (730)
|..++++|.+.|+.|+..
T Consensus 899 A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 899 AFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHcCCCCCcc
Confidence 999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.6e-65 Score=566.95 Aligned_cols=514 Identities=18% Similarity=0.305 Sum_probs=476.1
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM-VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
..+..+|+.+|..|.+.|++++|+.+|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGR 323 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 323 (730)
|+.+|++.|++++|.++|++|.+ ||.++||+++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004791 324 KSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDL 403 (730)
Q Consensus 324 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (730)
.+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965 5999999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 004791 404 MKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ 483 (730)
Q Consensus 404 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 483 (730)
|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 688
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS-DDCLPNSYTYNALIDG 562 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~ 562 (730)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5889999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.++. +..+|..|+++|++.|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHH
Confidence 99999999999998875 56899999999999999999999999999999865432 567999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHH-------HHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 643 EDLIVKMNREGIVPD-SVTYTLLI-------CAYAH----LGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~-~~~~~~l~-------~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
.+++++|.+.|+... ..+|..+. .+-.. ..-++...++.++|.+.|+.||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999997643 22332111 00000 112455667888899999999864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.1e-64 Score=556.94 Aligned_cols=475 Identities=21% Similarity=0.302 Sum_probs=456.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHH
Q 004791 200 VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAG-LSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTN 278 (730)
Q Consensus 200 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 278 (730)
..+..+|+.+|.+|.+.|++++|+.+|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
++.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999974 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 359 VDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438 (730)
Q Consensus 359 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 438 (730)
.+.+.+++..+.+.|+.+|..+|++|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 46899999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 004791 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE 518 (730)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 518 (730)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|.+ +|.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965 588
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK-MGVKPTVYTYTILIEE 597 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~~ 597 (730)
.+|+.||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|.+.|.+++|.++|++|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~ 676 (730)
|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..|+++|++.|++++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHH
Confidence 99999999999999876 5789999999999999999999999999999986 446 47899999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 004791 677 AFDVLKRMFDAGCEP 691 (730)
Q Consensus 677 A~~~~~~m~~~g~~p 691 (730)
|.+++++|.+.|+.+
T Consensus 547 A~~v~~~m~~~g~~k 561 (697)
T PLN03081 547 AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-36 Score=351.90 Aligned_cols=610 Identities=14% Similarity=0.035 Sum_probs=519.7
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChh--------------hHHHHH
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDK--------------EILFVL 149 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ 149 (730)
...++++.|+..|..+.... +.....+..+..++...|++++|...+..++...+... +...+.
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 36788999999998887543 23344556667778889999999999988876554332 233344
Q ss_pred HHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 150 DFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKI 229 (730)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 229 (730)
..+..+... .+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++++
T Consensus 350 ~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 423 (899)
T TIGR02917 350 ATLSPALGL-----DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETA 423 (899)
T ss_pred HHHHHHHhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 444443322 24567889999999999999999999999998864 235667888889999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 004791 230 VQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR 309 (730)
Q Consensus 230 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 309 (730)
.+.... .......++..+.+.|++++|..+++.+.. ..+.+..+|..+...+...|++++|.+.|+++.+.+ +.+..
T Consensus 424 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 424 AQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 887533 345566788899999999999999999987 345678899999999999999999999999998765 45677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
.+..++..+...|++++|.+.|+++...++. +..++..+...+.+.|+.++|...++++.+.+. .+...+..++..|.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHH
Confidence 8888999999999999999999999987654 788899999999999999999999999988754 36778888999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
+.|++++|.++++.+.+.. +.+..+|..++..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998764 5678899999999999999999999999998764 3467788899999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004791 470 VLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC 549 (730)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 549 (730)
.++++.+.. +.+..++..++..+...|++++|..+++.+.+..+. +...+..+...+.+.|++++|...++++...+
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999998764 346788999999999999999999999999988654 77788899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+..+ .+...+..+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 555788889999999999999999999999865 67888999999999999999999999999998764 478899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChh
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVD 709 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~ 709 (730)
+..+...|+ .+|+.+++++.+.. +.+..++..++.++...|++++|.++++++++.+.. +..++..+...+.+.|..
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 999999999 88999999999853 336778889999999999999999999999987644 888999999999999999
Q ss_pred hhhhhccc
Q 004791 710 ERKQQCDG 717 (730)
Q Consensus 710 e~~~~~~~ 717 (730)
+++.++-.
T Consensus 888 ~~A~~~~~ 895 (899)
T TIGR02917 888 AEARKELD 895 (899)
T ss_pred HHHHHHHH
Confidence 88776543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-34 Score=338.06 Aligned_cols=602 Identities=15% Similarity=0.074 Sum_probs=317.5
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccCh--------------hhHHHHH
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLD--------------KEILFVL 149 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~ 149 (730)
...++.+.|+..|..+.... +.+..++..++.++...|++++|...+..++...+.. ++...+.
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 35567777777777665432 3456667777777777777777777776666543322 2223333
Q ss_pred HHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 150 DFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKI 229 (730)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 229 (730)
..+.+..... +.+...+..+...+...|++++|...|+++++.. +.+...+..+...+.+.|++++|...+.++
T Consensus 282 ~~~~~~l~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 282 ETLQDALKSA-----PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHhC-----CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333332211 1112233334445556666666666666665542 223445555556666666666666666666
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 004791 230 VQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR 309 (730)
Q Consensus 230 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 309 (730)
.... +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +....
T Consensus 356 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 432 (899)
T TIGR02917 356 LGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGR 432 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccchh
Confidence 5543 2345555666666666666666666666655432 2344455555556666666666666666555443 11223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
....++..+.+.|++++|+++++.+.... +.+..++..+...+...|++++|...|+++.+... .+...+..++..+.
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 510 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDI 510 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH
Confidence 33444555555555555555555555432 22445555555555555555555555555554322 13444455555555
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
..|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|.+
T Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555555555443 3344455555555555555555555555554432 2234444555555555555555555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004791 470 VLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC 549 (730)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 549 (730)
+++.+.+.. +.+...|..+..++...|++++|...++.+.+..+. +...+..+..++.+.|++++|...++++.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555432 234445555555555555555555555555544322 34445555555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
+.+..++..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++...+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 3344555555555555555555555555555443 3344455555555555555555555555555432 222444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCh
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKV 708 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~ 708 (730)
+.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+.. +++...+..+...+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 555555555555555555555432 2344555555555555555555555555555432 2334444444444444444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.5e-27 Score=274.39 Aligned_cols=604 Identities=12% Similarity=0.041 Sum_probs=421.3
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSL 164 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (730)
..++++.|.+.+..+.... +.++..+..++.++.+.|+.++|.+.+..+....+....+..+...+.. .
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~---------~ 108 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL---------S 108 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh---------c
Confidence 6678888988888776543 4578889999999999999999999999999887766655443333321 1
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIY-TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
.++......+.+.+.+.|++++|+..|+++++... |+.. ............|+.++|+..++++.+..+ .+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 34444556667778888999999999998887532 2322 111111222345888999999999888743 35667778
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCC----------------C--cC-hhhH----------------------------
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGC----------------R--RN-EVSY---------------------------- 276 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~----------------~--~~-~~~~---------------------------- 276 (730)
+...+...|+.++|+..++++..... . ++ ...+
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 88888888999999998888754210 0 00 0000
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhH---
Q 004791 277 ------TNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN-VHTY--- 346 (730)
Q Consensus 277 ------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~--- 346 (730)
......+...|++++|+..|++..+.+ +.+..++..+...+.+.|++++|+..|++..+...... ...+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 012344566788888888888887764 34677788888888888888888888888877643321 1111
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHH
Q 004791 347 ---------TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYN 417 (730)
Q Consensus 347 ---------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 417 (730)
......+.+.|++++|+..|+++++... .+...+..+...+...|++++|++.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1224456678888888888888887643 255667778888888888888888888887653 33455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 004791 418 ELICGFCKRKNVHRAMSLLNELLEQNLS--------PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVF 489 (730)
Q Consensus 418 ~li~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (730)
.+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.+++..+.... +...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 6666654 45678887777654332100 01223455667778889999999999988876432 56677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY---------TYNALI 560 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~li 560 (730)
...|.+.|++++|...++++.+..+. +...+..+...+...|+.++|+..++.+......++.. .+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888999999999999988876543 45555555566777888889988888765432222221 123455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++++..+. +...+..++..|...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 667788999999988872 2456677788889999999999999999999987533 6788889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCChhhhhhh
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCE-P----SHHTYAFLIKHLSNKKVDERKQQ 714 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~~~~~l~~~l~~~~~~e~~~~ 714 (730)
+|++.++++.+.. +.+...+..+..++...|++++|.+++++++..... | +...+..+...+...|..+++.+
T Consensus 655 eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 655 AARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999888743 235667778888899999999999999998864221 1 12345555566666666655543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2e-25 Score=261.22 Aligned_cols=586 Identities=13% Similarity=0.049 Sum_probs=425.9
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHH----------------HHHHHHHHHhcCChhhHHHHHHHHHHcccChhh---
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVES----------------YSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKE--- 144 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~----------------~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--- 144 (730)
...++.+.|...++.+.+.. +.+... .....+.+.+.|++++|...+..++...+....
T Consensus 73 l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~ 150 (1157)
T PRK11447 73 LRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAV 150 (1157)
T ss_pred HhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHH
Confidence 37789999999997776543 223222 234455788999999999999988865433221
Q ss_pred ------------HHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHH-----
Q 004791 145 ------------ILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN--IYT----- 205 (730)
Q Consensus 145 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~----- 205 (730)
...+...+.++... .+.++..+..+...+.+.|+.++|+..++++.+...... ...
T Consensus 151 ~y~~~~~~~~g~~~~A~~~L~~ll~~-----~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 151 EYWRLVAKLPAQRPEAINQLQRLNAD-----YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred HHHHHHhhCCccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 12233333333322 245667788888889899999999999998876421100 001
Q ss_pred ------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcCh
Q 004791 206 ------------FNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE 273 (730)
Q Consensus 206 ------------~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 273 (730)
+...+..+-.......|...+.++......|+.. .......+...|++++|+..|++..+.. +.+.
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~ 303 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDS 303 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 1111111112222445555555554432233322 1234567788999999999999998754 4578
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRP-TVRTY------------TVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
.++..+...+.+.|++++|+..|++..+.+... ....| ......+.+.|++++|++.|+++++..+.
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~ 383 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT 383 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999998764221 11112 12345677899999999999999987544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--------CCC
Q 004791 341 PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNC--------SPN 412 (730)
Q Consensus 341 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~~ 412 (730)
+...+..+...+...|++++|++.|+++++.... +...+..+...|. .++.++|..+++.+..... ...
T Consensus 384 -~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 384 -DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 6778888999999999999999999999986432 5566777777774 4678999999877643210 001
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004791 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDT 492 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 492 (730)
...+..+...+...|++++|++.++++++.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 2245567778889999999999999999864 23566778899999999999999999999887543 244455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCH---------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKAGE---------VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
+...++.++|...++.+......++. ..+..+...+...|+.++|+.+++. .+.+...+..+...+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 77889999999999886543222221 1233456778899999999999872 256677788899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
.+.|++++|+..|+++++.. +.+...+..++..+...|++++|++.++++.+... .+...+..+..++...|++++|.
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999875 56788999999999999999999999999887532 25667788889999999999999
Q ss_pred HHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCC
Q 004791 644 DLIVKMNREGI--VP---DSVTYTLLICAYAHLGLIYSAFDVLKRMF-DAGCE 690 (730)
Q Consensus 644 ~~~~~m~~~g~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~ 690 (730)
++++++....- .| +...+..+...+...|+.++|+..|++.+ ..|+.
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 99999987531 11 23566777889999999999999999996 34454
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2.3e-21 Score=216.35 Aligned_cols=553 Identities=12% Similarity=0.043 Sum_probs=344.1
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSL 164 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (730)
..++++.|+..|+.+.... +.+..++..+...+.+.|+.++|+...+..++..+.+.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~--------------------- 112 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA--------------------- 112 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH---------------------
Confidence 5689999999999998654 45688999999999999999999999888876543222
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCC
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING--------CCKVGNVGEAELYVSKIVQAGLSP 236 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~g~~~ 236 (730)
..+..+ ..+ +++++|..+|+++++..+. +..++..+... |.+. ++|...++ .......|
T Consensus 113 ----~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 113 ----RLERSL-AAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred ----HHHHHH-HHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 222222 111 4555555555555543211 12222222222 3333 22222222 21111222
Q ss_pred CHHhHHHH-HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 237 DTFTYTSL-ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE-AKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 237 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
+..+.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. .+.+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHH
Confidence 23322222 455555555555555555555543 1233334444444444 244 4444443321 11244455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-CChhh------------------------------HHHHHHHHHhcCCHHHHH
Q 004791 315 IFGLCRVGRKSEALEFFNEMSARGCE-PNVHT------------------------------YTVLIDCLCKENKVDEAS 363 (730)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~------------------------------~~~li~~~~~~g~~~~A~ 363 (730)
+..|.+.|+.++|.++++++...-.. |...+ ...++..+.+.++++.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 55555555555555555544322110 11111 111233444444444333
Q ss_pred H-----------------------------HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-C-CCCC
Q 004791 364 E-----------------------------LLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN-N-CSPN 412 (730)
Q Consensus 364 ~-----------------------------~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~ 412 (730)
+ .+..|.+.. +-+....-.+.-...+.|+.++|.++|+..... + -..+
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 3 333333321 113333334444567788999999999888763 1 1223
Q ss_pred hhcHHHHHHHHHhcCC---HHHHHHH-------------------------HHHHHHCCCCC--ChhhHHHHHHHHHhCC
Q 004791 413 ARTYNELICGFCKRKN---VHRAMSL-------------------------LNELLEQNLSP--TLITYNSLIYGQCREG 462 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~---~~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~li~~~~~~g 462 (730)
.....-++..|.+.+. ..++..+ +...... .++ +...|..+...+.. +
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-C
Confidence 3344467777777665 3333333 1111111 133 56677777777776 7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLE 542 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 542 (730)
+.++|+..+.+.... .|+......+...+...|++++|...++++.... |+...+..+..++.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888899988887765 3555444444555578999999999999986652 344456677888899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004791 543 RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD 622 (730)
Q Consensus 543 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 622 (730)
+.++.+ +.+...+..+.....+.|++++|...+++.++.. |+...+..+..++.+.|++++|+..+++.++..+. +
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~ 642 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-N 642 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 998875 3344444444445556699999999999999864 67888999999999999999999999999987543 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++. .|+.
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 7788899999999999999999999999853 336888999999999999999999999999874 5655
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-21 Score=202.89 Aligned_cols=575 Identities=12% Similarity=0.058 Sum_probs=426.7
Q ss_pred ChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccC
Q 004791 88 NPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLS 167 (730)
Q Consensus 88 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (730)
+.+.|..-|+.+.++. +++.....--..+....+++..|..++..++..++. +++|
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~----------------------~~aD 200 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPA----------------------CKAD 200 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc----------------------cCCC
Confidence 3567788888887654 445554444444555566777777776665543321 2344
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKV---GNVGEAELYVSKIVQAGLSPDTFTYTSL 244 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l 244 (730)
+.. .+..++++.|+.+.|+..|.++++..+ .++.++..|.-.-... ..+..|..++.+.-... ..++++.+.|
T Consensus 201 ~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~L 276 (1018)
T KOG2002|consen 201 VRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHL 276 (1018)
T ss_pred ccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHH
Confidence 322 233667899999999999999998643 2333333333322222 34667777777776654 3578899999
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCC--cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCR--RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
...|.-.|++..+..+...+...... .-...|-.+..+|...|++++|...|.+..+.+..--+..+..+...+.+.|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 99999999999999999988874321 1234578899999999999999999999887642222456667889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN----KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
+++.+...|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+-...-+.. +
T Consensus 357 dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L 433 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-L 433 (1018)
T ss_pred hHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-H
Confidence 999999999999987544 6778888888888775 5678888888887764 3378888888887766554444 6
Q ss_pred HHHHHHH----hCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh------hhHHHHHHHHHhCCChh
Q 004791 399 QILDLMK----SNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ---NLSPTL------ITYNSLIYGQCREGHLD 465 (730)
Q Consensus 399 ~~~~~m~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~ 465 (730)
.+|.... ..+..+.....|.+...+...|++.+|...|.+.... ...++. .+-..+.......++.+
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 6665443 4555677888999999999999999999999988765 122232 23445677777888999
Q ss_pred HHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 466 SAYKVLHLINESGLVPD-QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERM 544 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 544 (730)
.|.+.|..+.+.. |. ...|..+.-+....+...+|...+..+...+- .++..+..+...+.+...+..|.+-|+.+
T Consensus 514 ~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 514 VAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred HHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 9999999998863 33 33444444333345788899999999887643 37788888888999999999999877777
Q ss_pred HhCCC-CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004791 545 LSDDC-LPNSYTYNALIDGLYR------------ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLL 611 (730)
Q Consensus 545 ~~~~~-~p~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (730)
.+.-. .+|..+..+|...|.+ .+..++|+++|.++++.. +.|...-|.++..++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 66422 3677777777775542 235678999999999876 678888899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004791 612 DQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCE 690 (730)
Q Consensus 612 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 690 (730)
.+..+... .+..+|..+.++|..+|++..|+++|+...+.- -.-+..+...|..++...|++.+|.+.+...+...+.
T Consensus 670 sqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 670 SQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99998643 255689999999999999999999999987653 3347889999999999999999999999998875444
Q ss_pred CCHHHHHH
Q 004791 691 PSHHTYAF 698 (730)
Q Consensus 691 p~~~~~~~ 698 (730)
...+.|+.
T Consensus 749 ~~~v~FN~ 756 (1018)
T KOG2002|consen 749 NTSVKFNL 756 (1018)
T ss_pred cchHHhHH
Confidence 44455653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-23 Score=205.74 Aligned_cols=447 Identities=17% Similarity=0.151 Sum_probs=353.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhc
Q 004791 207 NTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286 (730)
Q Consensus 207 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 286 (730)
..+..-..+.|++++|++....+-+.+. .+....-.+-.++.+..+++....--....+ ..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHh
Confidence 4455666677888888887766655432 1222222333556666666665443333333 2234567899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 004791 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV-HTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 287 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 365 (730)
|++++|+.+|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++.+ |+. -..+.+...+-..|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999875 3467899999999999999999999999988764 443 3344455566668999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 366 LNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLS 445 (730)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 445 (730)
|.+.++.... =.+.|..|...+-..|+.-.|++.|++..+.+ +.-...|-.|...|...+.+++|+..+.+.+... +
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 9998886322 36788999999999999999999999998763 2235788899999999999999999999888753 2
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 525 (730)
.....+..+...|..+|.++-|+..+++.++.... =...|+.+..++...|++.+|...+.+.+...+. .....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 35567777888899999999999999999886422 3578999999999999999999999999987554 667889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVLKEGDF 604 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~ 604 (730)
..|...|++++|..+|...++-. +.-....+.|...|-+.|++++|+..|++.++. .|+ ...|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999998864 334567899999999999999999999999974 455 57899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 004791 605 DHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYA 669 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~ 669 (730)
+.|.+.+.+++..++. =....+.|...|...|+..+|+.-+++..+ ++|| +..|..++.++.
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9999999999985422 356788999999999999999999999998 6787 566666666543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-22 Score=197.42 Aligned_cols=445 Identities=16% Similarity=0.125 Sum_probs=363.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
...|..-..+.|++.+|.+.-..+-..+ +.+....-.+-.++.+..+++.....-....+.+ +--..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4456666778999999999877665533 2233334445566777778877666555444443 3356799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCCHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVT-YNALIDGYCKEGLMEAALQ 399 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 399 (730)
.|++++|+..++.+++..++ .+..|..+..++...|+.+.|...|.+.++. .|+... ...+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999998655 7889999999999999999999999999885 344333 3345556667899999999
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 004791 400 ILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT-LITYNSLIYGQCREGHLDSAYKVLHLINESG 478 (730)
Q Consensus 400 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 478 (730)
.|.+..+.. +-=...|+.|...+-..|+...|+..|++..... |+ ...|..|...|...+.+++|+..+.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 998888763 3346789999999999999999999999998853 43 4578899999999999999999999887653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 479 LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558 (730)
Q Consensus 479 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 558 (730)
+-....+..+...|..+|.++-|+..+++.++..+. =...|+.|..++-..|++.+|.+.+.+.+... +.-..+.+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 224567777888899999999999999999988654 45789999999999999999999999999864 455678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIG 637 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 637 (730)
|...|...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.+. ++|+ ...|+.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999999854 33467789999999999999999999999997 4564 558999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFLIKHL 703 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l 703 (730)
+.++|+..+.+.+. +.|. ...++.|...|..+|++.+|+.-|++.++ ++||.. .|..++.++
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 99999999999998 5575 77899999999999999999999999987 577753 344444443
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.4e-19 Score=202.34 Aligned_cols=581 Identities=12% Similarity=0.016 Sum_probs=412.6
Q ss_pred hhhhccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHH-------
Q 004791 80 SSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFL------- 152 (730)
Q Consensus 80 ~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------- 152 (730)
.+.+...++++.|+..+..+.... +.+...+..+..+ ++.++|..+++.++...+.+.++...+...
T Consensus 85 A~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 85 AEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchh
Confidence 345557889999999998887653 3455555544333 888999999999998887766654333322
Q ss_pred --------HHHhhcCCccccccCHHhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHH
Q 004791 153 --------RRVNESGSEFSLKLSVKGYN-TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK-VGNVGEA 222 (730)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A 222 (730)
...-. .......|+..+.. .+.+.|.+.|++++|+..+.++.+.++. +......+..+|.. .++ +++
T Consensus 159 ~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 159 RLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHH
Confidence 00001 11111233344444 4489999999999999999999998643 45556777778887 477 888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCC-cChhhHH------------------------
Q 004791 223 ELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCR-RNEVSYT------------------------ 277 (730)
Q Consensus 223 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~------------------------ 277 (730)
..++... .+.++..+..++..|.+.|+.++|.++++++...... |+..+|.
T Consensus 236 ~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 8886542 3368888999999999999999999999988653211 2222222
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 278 ------NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLID 351 (730)
Q Consensus 278 ------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 351 (730)
.++..+.+.++++.+.++.. +.|.....-.-..+....+...++.+.+..|.+.... +....--+.-
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~ 384 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTW 384 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 22445556666665554421 2233222211111222346777788888888776332 5555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhCCC---HHHHHHH----------------------HHHH
Q 004791 352 CLCKENKVDEASELLNRMLEK-G-LFPNVVTYNALIDGYCKEGL---MEAALQI----------------------LDLM 404 (730)
Q Consensus 352 ~~~~~g~~~~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m 404 (730)
...+.|+.++|..+|+..... + -..+....+-++..|.+.+. ..++..+ ++..
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 678899999999999998773 1 22244455577788877765 3333222 1111
Q ss_pred HhC-CC-CC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 004791 405 KSN-NC-SP--NARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV 480 (730)
Q Consensus 405 ~~~-~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 480 (730)
... +. ++ +...|..+...+.. ++.++|+..+.+..... |+......+...+...|++++|...++++... .
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 111 11 33 56777888877776 88999999888887753 55444444555567899999999999998664 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
|+...+..+...+.+.|+.++|...++...+.++. ....+..+.....+.|++++|...+++.++.. |+...+..+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 44455667778889999999999999999987543 33344444445556799999999999999875 6788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+.+.|++++|+..+++.++.. +.+...++.+...+...|++++|++.+++.++..+. +...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999876 567888899999999999999999999999987543 7888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 641 EAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
+|+..+++..+. .|+ ..+.........+..+++.|.+-+++... +.|+..
T Consensus 695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 999999999984 565 46666778888888889999998888765 355555
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.4e-20 Score=192.93 Aligned_cols=536 Identities=13% Similarity=0.065 Sum_probs=396.0
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM--VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
++|+-.+---.......+++..|+.+|+.++... ..||+. ..+..++.+.|+.+.|+..|.++.+..+ -++.++-
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv 237 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALV 237 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHH
Confidence 4444433333334446689999999999987653 344543 2344667799999999999999998643 2333333
Q ss_pred HHHHHHHhc---CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHH
Q 004791 243 SLILGYCRN---KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR--PTVRTYTVVIFG 317 (730)
Q Consensus 243 ~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~ 317 (730)
.|...-... ..+..+..++...-..+ +.|+++.+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 332222222 23456666666555432 368889999999999999999999999998775311 123458889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC----C
Q 004791 318 LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG----L 393 (730)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~ 393 (730)
|...|++++|...|.+..+....-.+..+.-+...+.+.|+++.+...|+.+.+.. +-+..+...|...|...+ .
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999999988876443225556678999999999999999999999873 336778888888888775 6
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 394 MEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL----EQNLSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
.+.|..++.+..+.. +.|...|-.+...+-...- ..++..|..+. ..+-.+-+...|.+...+...|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 677888888777664 5577788887777765444 34477766554 34445677889999999999999999999
Q ss_pred HHHHHHhC---CCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 004791 470 VLHLINES---GLVPDQ------FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSL 540 (730)
Q Consensus 470 ~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 540 (730)
.|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+..+. =+..|..++..--..+...+|..+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHH
Confidence 99987765 122333 22334555666778999999999999987432 233444444333345788899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH------------HcCCHHHH
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVL------------KEGDFDHA 607 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~------------~~g~~~~A 607 (730)
++..+..+ ..++..+..+...+.+...+..|.+-|+...+.- ..+|.++.-.|++.|. ..+..++|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 99998865 5566777777778888888888888777666522 2367777777777664 23568899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD- 686 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~- 686 (730)
+++|.+.+...+. |...-|.++-+++..|++.+|..+|.+..+.. ..+..+|..++++|...|++..|+++|+....
T Consensus 632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987644 88888899999999999999999999999865 34677899999999999999999999999874
Q ss_pred cCCCCCHHHHHHHHHHHHcCChhhh
Q 004791 687 AGCEPSHHTYAFLIKHLSNKKVDER 711 (730)
Q Consensus 687 ~g~~p~~~~~~~l~~~l~~~~~~e~ 711 (730)
.+-.-+......|-+++...|...+
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHH
Confidence 4445577778888898888876443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.3e-19 Score=199.60 Aligned_cols=433 Identities=14% Similarity=0.015 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHH
Q 004791 205 TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLC 284 (730)
Q Consensus 205 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 284 (730)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4555666677777777777777777664 3555666666666777777777777776666533 234556666666677
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004791 285 EAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASE 364 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 364 (730)
..|++++|+..|......+.. +......++..+.. ..+........+... ++...+..+.. +......+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchh
Confidence 777777776666555433211 11111111111111 122222222222211 12222222222 111111111111
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 365 LLNRMLEKGLFPN-VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN 443 (730)
Q Consensus 365 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 443 (730)
-+.+..+. .+. ...+..+...+.. ....+.+++|.+.|++.++.+
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e--------------------------------~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPE--------------------------------SKADESYEEAARAFEKALDLG 324 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHH--------------------------------hhhhhhHHHHHHHHHHHHhcC
Confidence 11111110 000 0011111100000 011234444444444444432
Q ss_pred --CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH
Q 004791 444 --LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIY 521 (730)
Q Consensus 444 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 521 (730)
.+.....++.+...+...|++++|+..+++..+... -....|..+...+...|++++|...|+++.+..+. +..+|
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~ 402 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIY 402 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 111223344444444445555555555555444321 12334444444455555555555555555444322 34445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 555555555555555555555555443 2334444445555555555555555555554432 23344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVY------TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 675 (730)
|++++|++.|++.++.....+.. .++..+..+...|++++|.+++++..+.. +.+...+..++..+...|+++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHH
Confidence 55555555555555432111000 01111112222455555555555555432 112334555555555555555
Q ss_pred HHHHHHHHHHH
Q 004791 676 SAFDVLKRMFD 686 (730)
Q Consensus 676 ~A~~~~~~m~~ 686 (730)
+|+++|++..+
T Consensus 560 eAi~~~e~A~~ 570 (615)
T TIGR00990 560 EALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=9.7e-19 Score=192.67 Aligned_cols=432 Identities=13% Similarity=0.026 Sum_probs=243.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGY 248 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 248 (730)
..+......|.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|+..+.+.++... .+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34667788899999999999999999975 57788899999999999999999999999998742 3567888999999
Q ss_pred HhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 249 CRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328 (730)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (730)
...|++++|+.-|..+...+...+. ....++.-+.. ..+........+.. +++...+..+...+ ...+...+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcch
Confidence 9999999999988776553321222 12222222222 22333333333332 23333444333322 222222222
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004791 329 EFFNEMSARGCEPNVHTYTVLIDCL---CKENKVDEASELLNRMLEKG-L-FPNVVTYNALIDGYCKEGLMEAALQILDL 403 (730)
Q Consensus 329 ~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (730)
.-+.+....... ....+..+...+ ...+++++|.+.|++.++.+ . +.+...|+.+...+...|++++|+..+++
T Consensus 278 ~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 278 AGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222221111111 011111111111 22356778888887777654 1 12345566666667777777777777777
Q ss_pred HHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 004791 404 MKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ 483 (730)
Q Consensus 404 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 483 (730)
..+.. +.+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|...|++..+
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~------- 427 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID------- 427 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 66552 2234455566666666666666666666665542 22344455555555555555555555555544
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
..+. +...+..+..++.+.|++++|+..+++.+... +.+...++.+...+
T Consensus 428 ----------------------------l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 428 ----------------------------LDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred ----------------------------cCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3222 33344444445555555555555555554432 23344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTV------YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
...|++++|++.|++.++.....+. ..++..+..+...|++++|.+++++.++.++. +...+..++.++...|
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQG 556 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcc
Confidence 5555555555555555543211000 01111122223356777777777776665422 3445667777777777
Q ss_pred CHHHHHHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNR 651 (730)
Q Consensus 638 ~~~~A~~~~~~m~~ 651 (730)
++++|+++|++..+
T Consensus 557 ~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 557 DVDEALKLFERAAE 570 (615)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777765
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.7e-20 Score=196.29 Aligned_cols=299 Identities=17% Similarity=0.126 Sum_probs=194.4
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCChh
Q 004791 389 CKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT---LITYNSLIYGQCREGHLD 465 (730)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 465 (730)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 22333444444444455555555555544444321111 123455555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCChhHHHHHH
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG----EVIYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 541 (730)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665532 23445566666666666666666666666665543321 123455667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP 621 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 621 (730)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+.. |
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 8887754 345567777788888888888888888888865422224567788888888899999999888888753 5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH---LGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.++++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5556678888888899999999999888874 5888888877777664 558888999999888877777665
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.6e-20 Score=193.10 Aligned_cols=302 Identities=16% Similarity=0.157 Sum_probs=141.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCCHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN---VVTYNALIDGYCKEGLME 395 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~ 395 (730)
...|++++|+..|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444555555555555544322 334444455555555555555555555444321110 123444455555555555
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 004791 396 AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLIN 475 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 475 (730)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++++.+.+..+....
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 5555555554431 22344444444455555555555555544444321110000
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004791 476 ESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYT 555 (730)
Q Consensus 476 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 555 (730)
....+..+...+.+.|++++|...++++.+..+. +...+..+...+.+.|++++|.++++++...+......+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0011222333344444444444444444443221 233444455555555555555555555554331111234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS 635 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 635 (730)
++.++.+|.+.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++++. .|+...+..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 4555555555566666666655555532 34444455555566666666666666655553 3455555555544443
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCH
Q 004791 636 ---IGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 636 ---~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
.|+.+++..++++|.+.++.|++
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33556666666666655444443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.7e-18 Score=189.71 Aligned_cols=328 Identities=12% Similarity=0.068 Sum_probs=143.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
++..+.+.|++++|..+++...... +-+...+..++.+....|++++|++.|+++....+. +...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 3444455555555555555555443 222333334444444555555555555555554332 34445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 359 VDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438 (730)
Q Consensus 359 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 438 (730)
+++|...++++.+... .+...+..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+++
T Consensus 126 ~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 5555555555554321 134444555555555555555555555444332 1112222222 224445555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCC
Q 004791 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEE----AQVLFDSLEKKGI 514 (730)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~ 514 (730)
+++....++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...++++.+..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 4443222222222333344444444555554444444432 1133334444444444444442 3444444444332
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 004791 515 KAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV-YTYTI 593 (730)
Q Consensus 515 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ 593 (730)
. +...+..+...+.+.|++++|+..+++.+... +.+...+..+...+.+.|++++|+..++++.+.. |+. ..+..
T Consensus 282 ~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~ 357 (656)
T PRK15174 282 D-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRY 357 (656)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHH
Confidence 2 33444444444444444444444444444432 2223333444444444444444444444444322 221 12222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+..++...|+.++|...|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 23334444444444444444443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4e-18 Score=191.04 Aligned_cols=429 Identities=12% Similarity=0.069 Sum_probs=260.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
+..-..-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444555666667777777777777766411 2445557777777777777777777777776653 334556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
.+...|++++|+..++++.+..+. +.. +..+...+...|+.++|...++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 777777777777777777766333 444 666777777777777777777777775433 45555566666677777777
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHH
Q 004791 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHL---DSAYKVLHL 473 (730)
Q Consensus 397 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~ 473 (730)
|++.++.... .|+.. .-+ ....+.....- .+.......+++ ++|++.++.
T Consensus 169 Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK---RDL-------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHHHHH
Confidence 7777765543 22200 000 00000000000 000000111122 556666666
Q ss_pred HHhC-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004791 474 INES-GLVPDQF-TY----SVFIDTLCKRGRVEEAQVLFDSLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 474 ~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 546 (730)
+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 5542 1112211 11 11122344557777777777777765432 221 222245667777777777777777665
Q ss_pred CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHH
Q 004791 547 DDCLP---NSYTYNALIDGLYRERKVQEALLLVEKMTKMGV-----------KPT---VYTYTILIEEVLKEGDFDHAHR 609 (730)
Q Consensus 547 ~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 609 (730)
..... .......+..++...|++++|..+++++.+... .|+ ...+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43110 123445555566777777777777777765420 122 2345566777888889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
.++++....+. +...+..++..+...|++++|++.+++..+. .|+ ...+..++..+...|++++|..+++++++.
T Consensus 381 ~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~- 456 (765)
T PRK10049 381 RARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR- 456 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 99888876433 6778888888888889999999999988884 454 666777777888888999999999888874
Q ss_pred CCCCHHHHHHHHHHH
Q 004791 689 CEPSHHTYAFLIKHL 703 (730)
Q Consensus 689 ~~p~~~~~~~l~~~l 703 (730)
.|+......+=+.+
T Consensus 457 -~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 -EPQDPGVQRLARAR 470 (765)
T ss_pred -CCCCHHHHHHHHHH
Confidence 66666554444333
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3e-18 Score=187.84 Aligned_cols=354 Identities=10% Similarity=0.041 Sum_probs=286.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
...++..+.+.|++++|..+++...... +.+...+..++.+....|++++|...|+++.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3456777889999999999999998743 4556677777788889999999999999999875 4567789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQI 400 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (730)
.|++++|++.++++.+..+. +...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999987444 6778889999999999999999999988776433 33344333 347889999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH----HHHHHHHHHh
Q 004791 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS----AYKVLHLINE 476 (730)
Q Consensus 401 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~ 476 (730)
++.+.+....++...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++ |...++++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998876433444555666788899999999999999999864 4467788889999999999986 8999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HH
Q 004791 477 SGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YT 555 (730)
Q Consensus 477 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 555 (730)
... .+...+..+...+...|++++|...++++.+..+. +...+..+..++.+.|++++|+..++++...+ |+. ..
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 643 36778899999999999999999999999988655 66778889999999999999999999999865 443 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
+..+..++...|+.++|...|++..+.. |+.. ...+++|..-+.+..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHHHHHHHHHHHHh
Confidence 4455677889999999999999998753 3321 23445555555555553
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=6e-18 Score=189.63 Aligned_cols=415 Identities=12% Similarity=0.059 Sum_probs=272.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIH 281 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 281 (730)
+.....-.+......|+.++|+.++.+..... +.+...+..+...+.+.|++++|..++++..+.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455566777788899999999999998632 3455678999999999999999999999988743 356777889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
.+...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998874 44566 888999999999999999999999997655 66777778888989999999
Q ss_pred HHHHHHHHHHCCCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCH---HHH
Q 004791 362 ASELLNRMLEKGLFPNV------VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNV---HRA 432 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~A 432 (730)
|++.++.... .|+. .....++......+ ....+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHH
Confidence 9999987664 2221 00111111111000 0011111 444
Q ss_pred HHHHHHHHHC-CCCCChh-hH----HHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHH
Q 004791 433 MSLLNELLEQ-NLSPTLI-TY----NSLIYGQCREGHLDSAYKVLHLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 433 ~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 505 (730)
++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 4445444432 1111111 00 00022233445666666666665554321 221 111234455666666666666
Q ss_pred HHHHHHcCCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCC
Q 004791 506 FDSLEKKGIKA---GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-----------LPN---SYTYNALIDGLYRERK 568 (730)
Q Consensus 506 ~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~ 568 (730)
|+++.+..+.. .......+..++...|++++|..+++++..... .|+ ...+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 66655433211 122344445555666666666666666655320 122 2244556667778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
.++|+++++++.... +.+...+..++..+...|++++|++.++++++..+. +...+..++..+...|++++|..++++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887754 556777788888888888888888888888875422 455666777778888888888888888
Q ss_pred HHHCCCCCCHH
Q 004791 649 MNREGIVPDSV 659 (730)
Q Consensus 649 m~~~g~~~~~~ 659 (730)
+++. .|+..
T Consensus 453 ll~~--~Pd~~ 461 (765)
T PRK10049 453 VVAR--EPQDP 461 (765)
T ss_pred HHHh--CCCCH
Confidence 8874 46544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.1e-16 Score=173.36 Aligned_cols=457 Identities=14% Similarity=0.093 Sum_probs=298.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCC
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKR 288 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 288 (730)
-+-...+.|+++.|+..|.++.+..+.-....+ .++..+...|+.++|+..+++.... .+........++..+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 334556788888999999888876432112334 7778888888888888888888731 11222333333557777888
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
+++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 888888888888775 335666677778888888888888888888776 34444554444444445666668888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 004791 369 MLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL 448 (730)
Q Consensus 369 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 448 (730)
+.+..+. +...+..+...+.+.|-...|.++..+- |+..+-...... ..+.|.+..+-. ..+..
T Consensus 195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a----~~~~~ 258 (822)
T PRK14574 195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMA----VLPTR 258 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhc----ccccc
Confidence 8887432 6677777888888888888887766552 333322211110 011111111111 00000
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCC-HHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINES-GLVPD-QFT----YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
. - - .+.--.+.|+.-++.+... +..|. ... ..-.+-++...|++.++++.|+.+...+.+....+..
T Consensus 259 ~-~---~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 S-E---T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred c-c---h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0 0 0 0000224444444544431 11122 111 1223446677888888888888888777655566778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDD-----CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV------------- 584 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------------- 584 (730)
.+.++|...+++++|+.+++.+.... .+++......|..++...+++++|..+++++.+...
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 88888888888888888888886643 123444456788888888888888888888876211
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 004791 585 KPTV-YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYT 662 (730)
Q Consensus 585 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 662 (730)
.||- ..+..++..+...|++.+|++.++++....+. |......+.+.+...|++.+|.+.++.+... .| +..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 1121 23344567778889999999999999876533 8888888889999999999999999777764 45 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
..+.++...|++++|..+.+.+.+. .|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 7888888889999998888888764 566554433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=5.4e-16 Score=170.11 Aligned_cols=453 Identities=14% Similarity=0.067 Sum_probs=310.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNI--YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
.-+-...+.|+++.|+..|+++++. .|+. ..+ .++..+...|+.++|+.++++..... .........++..|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 3344567899999999999999986 4443 234 88888889999999999999998321 1223333344668888
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
.|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999999999855 3457778888999999999999999999998874 5666665555555556777779999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCS 410 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 410 (730)
++++.+..+. +...+..+...+.+.|-...|.++..+- |+..+-...... +.+.|.+..+... .
T Consensus 192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~----~ 255 (822)
T PRK14574 192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAV----L 255 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcc----c
Confidence 9999998654 7888889999999999999999877663 232222111110 1122222222111 1
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 004791 411 PNARTYNELICGFCKRKNVHRAMSLLNELLEQ-N-LSPTLITY----NSLIYGQCREGHLDSAYKVLHLINESGLVPDQF 484 (730)
Q Consensus 411 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 484 (730)
++.. -. -+.--.+.|+.-++.++.. + .++....| .-.+-++...|++.++++.|+.+...+.+....
T Consensus 256 ~~~~-~~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRS-ET------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred cccc-ch------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 1100 00 0111234555555555542 1 12111111 123445667778888888888887776554455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------
Q 004791 485 TYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-----KAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---------- 549 (730)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------- 549 (730)
+...+.++|...+++++|+.+++.+..... .++......|.-+|...+++++|..+++++.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 777778888888888888888888765431 22333356777788888888888888888876321
Q ss_pred -C--CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 550 -L--PNS-YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625 (730)
Q Consensus 550 -~--p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 625 (730)
. ||- ..+..++..+...|+..+|.+.++++.... |-|......+...+...|...+|++.++.+....+. +..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHH
Confidence 1 121 223445666778889999999999887765 668888888888889999999999999777665322 5667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
....+.++...|++++|..+.+.+.+. .|+..
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 778888888889999999988888874 46544
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=2.8e-14 Score=142.66 Aligned_cols=591 Identities=12% Similarity=0.056 Sum_probs=425.1
Q ss_pred ChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcC--------
Q 004791 88 NPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESG-------- 159 (730)
Q Consensus 88 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 159 (730)
|...|..++..+.... ++.+..|-+-.+.=-..|.+..|+.+...=...|+...++. ++.++ +....
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvW--LeaiR-Lhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVW--LEAIR-LHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHH--HHHHh-cCChHHHHHHHHH
Confidence 4567777777776443 33445555555555567777777766554444444444321 11111 10000
Q ss_pred CccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004791 160 SEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF 239 (730)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 239 (730)
..-.++.++..|---+.. ..+...=.++++++++. ++.++..|-. .....+.++|+-++.+.++. ++.+..
T Consensus 341 Avr~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~d 411 (913)
T KOG0495|consen 341 AVRFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMD 411 (913)
T ss_pred HHHhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHH
Confidence 000023344444322221 12333445667777765 2334445543 34556777799999999885 333444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCChhhHHHHH
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMG----EDDCRPTVRTYTVVI 315 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li 315 (730)
.| .+|.+..-|+.|.++++...+ .++.+...|.+-...--.+|+.+...+++++-. ..|+..+...|..=.
T Consensus 412 Lw----lAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 412 LW----LALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 44 456666778899999998887 577888899888888888999999998887653 457888888998888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 316 FGLCRVGRKSEALEFFNEMSARGCEP--NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
..|-..|..-.+..+....+..|++. -..||..-.+.|.+.+.++-|+.+|...++- .+-+...|...+..--..|.
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCc
Confidence 89999999999999999888877753 2468888889999999999999999998875 33367778877777777899
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 004791 394 MEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHL 473 (730)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 473 (730)
.++-..+|.+.... ++.....|......+-..|++..|..++.++.+... .+...|..-+.......+++.|..+|.+
T Consensus 566 ~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999998876 245566777777788888999999999999988643 3677888888888899999999999988
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004791 474 INESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS 553 (730)
Q Consensus 474 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 553 (730)
.... .|+...|..-+...--.+..++|.+++++.++.-+ .-...|..+.+.+-+.++++.|.+.|..-.+. +|..+
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 8764 56777777777777778999999999999988733 24568888899999999999999888876654 45666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..|..|...--+.|.+-+|..++++..-.+ +.+...|-..|.+-.+.|+.+.|..+..++++.- +.+...|..-|...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhc
Confidence 778888877788889999999999988776 6788889999999999999999999999888863 33666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCChhhhh
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH-HTYAFLIKHLSNKKVDERK 712 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l~~~~~~e~~ 712 (730)
.+.++-..+.+.+++. .-|..+...+...+....+++.|.++|.+.++. .||. .+|.-+.+.....|..+..
T Consensus 798 ~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred cCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHH
Confidence 7777655555555543 346666777777777778888888888888765 3443 4555566666666655444
Q ss_pred h
Q 004791 713 Q 713 (730)
Q Consensus 713 ~ 713 (730)
+
T Consensus 871 k 871 (913)
T KOG0495|consen 871 K 871 (913)
T ss_pred H
Confidence 3
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=5.5e-13 Score=133.61 Aligned_cols=505 Identities=13% Similarity=0.054 Sum_probs=409.1
Q ss_pred cccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
.+.++..|-..+ .....++|+.++.++++. +..+. -|.-+|.+..-++.|..++.+..+. ++-+..+|.+
T Consensus 376 iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 376 IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 355677776554 346777899999999985 22233 3445666778899999999999875 6668888988
Q ss_pred HHHHHHhcCChhHHHHHHHhc----hhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHH
Q 004791 244 LILGYCRNKDVEKGFRVFMMM----PKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRP--TVRTYTVVIFG 317 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~ 317 (730)
-...--.+|+.+...++.++- ...|+..+-..|..=...+-..|..--+..+.......|+.. -..||+.-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888788899999888887754 456888888999998999999999999999998888776543 24589999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 004791 318 LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAA 397 (730)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 397 (730)
|.+.+.++-|..+|...++.-+. +...|...+..--..|..++-..+|++....- +-....|.....-+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999886433 67788888877777899999999999999873 33667787788888889999999
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 398 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
..++....+.. +.+...|-.-+.....+..+++|..+|.+.... .|+...|..-+...--.++.++|.+++++.++.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999998875 446788889999999999999999999998874 467777877777777789999999999998875
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 478 GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 478 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
++.-...|..+.+.+-+.++++.|...|..-.+.- +-....|-.|...--+.|.+-.|..++++..-.+ |.+...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 33335678888889999999999999998777653 3366788888888889999999999999998876 67889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
..|.+-.+.|+.+.|..++.++++. ++.+...|..-|....+.++-.+....+++- .-|..+...+...+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHH
Confidence 9999999999999999999988875 3566777887887777777755555544443 447777888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 638 KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
+++.|.+.|++.++.+ +.+..+|..+...+..+|.-++-.+++++.... +|..--
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~ 886 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGE 886 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCc
Confidence 9999999999999865 234678888888999999999999999988753 665533
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.3e-16 Score=150.54 Aligned_cols=498 Identities=12% Similarity=0.103 Sum_probs=252.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTF-NTMINGCCKVGNVGEAELYVSKIVQAGLSPD----TFTY 241 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~ 241 (730)
...+...|...|.......+|+..|+-+++....|+.... ..+.+.+.+...+.+|+++|+-.+..-+..+ ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3345555667777788888888888888877666665433 3355667777888888888877665422222 1223
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--------H
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYT--------V 313 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--------~ 313 (730)
+.+...+.+.|.++.|+.-|+...+.. |+..+-..|+-++.-.|+-++..+.|.+|......+|..-|. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 344445666777777777777665533 666555555555666677777777777776543333332221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 314 VIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
|+.--.+. +.++.|.+.+-. + -++++-.-.+++.--+.|+.. .+|
T Consensus 358 ll~eai~n-------d~lk~~ek~~ka-~----------------aek~i~ta~kiiapvi~~~fa------~g~----- 402 (840)
T KOG2003|consen 358 LLNEAIKN-------DHLKNMEKENKA-D----------------AEKAIITAAKIIAPVIAPDFA------AGC----- 402 (840)
T ss_pred HHHHHHhh-------HHHHHHHHhhhh-h----------------HHHHHHHHHHHhccccccchh------ccc-----
Confidence 11100000 112222222110 1 111111111111111111110 000
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-h-CCChhHHHHHH
Q 004791 394 MEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQC-R-EGHLDSAYKVL 471 (730)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~g~~~~a~~~~ 471 (730)
+-.++.++.-.... .-...-..-...+.+.|+++.|+++++-..++.-......-+.|-..+. + ..++..|.++.
T Consensus 403 -dwcle~lk~s~~~~--la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 403 -DWCLESLKASQHAE--LAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred -HHHHHHHHHhhhhh--hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 00111111000000 0000000111234555666666666555544322222222222222221 1 12445555554
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004791 472 HLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP 551 (730)
Q Consensus 472 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 551 (730)
+...... .-+......-.+.....|++++|.+.+++.+..+.. -....-.+.-.+-..|++++|++.|-++... ...
T Consensus 480 d~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~n 556 (840)
T KOG2003|consen 480 DIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLN 556 (840)
T ss_pred HHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHh
Confidence 4443321 112222222222233456677777777766655322 1112222233455667777777766655432 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+..++..+...|-...+..+|++++-+.... ++.|+.+...|...|-+.|+-.+|.+.+-.-... ++-+..+...|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 5556666666666666777777776665543 3556667777777777777777776665444332 2336666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChhh
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC-AYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDE 710 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~e 710 (730)
-|....-++.|+.+|++..- +.|+..-|..++. ++.+.|+++.|.++|+....+ +.-|..+...|++.....|..+
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 66666667777777776654 5577777765554 345567777777777776543 4556666666776666666555
Q ss_pred hh
Q 004791 711 RK 712 (730)
Q Consensus 711 ~~ 712 (730)
..
T Consensus 712 ~k 713 (840)
T KOG2003|consen 712 AK 713 (840)
T ss_pred HH
Confidence 43
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=1.5e-13 Score=143.22 Aligned_cols=556 Identities=15% Similarity=0.104 Sum_probs=375.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHH
Q 004791 111 SYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRV 190 (730)
Q Consensus 111 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (730)
......+.+.-.|++++|+.++.++|+. .+.+...|.+|...|-+.|+.+.+...
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq-------------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~ 195 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ-------------------------DPRNPIAYYTLGEIYEQRGDIEKALNF 195 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------------CccchhhHHHHHHHHHHcccHHHHHHH
Confidence 3344445555569999999999888864 245677899999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 004791 191 YLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCR 270 (730)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 270 (730)
+-.+.... +.|..-|..+.....+.|++++|.-+|.++++..+. +...+-.-...|-+.|+...|..-|.++.....+
T Consensus 196 ~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 196 WLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 87766543 336678999999999999999999999999998543 4333344567888999999999999999875432
Q ss_pred cChh----hHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----
Q 004791 271 RNEV----SYTNLIHGLCEAKRVDEALDLFRRMGED-DCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE----- 340 (730)
Q Consensus 271 ~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----- 340 (730)
.|.. .--.+++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+..+..+
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 2222 2224466677788889999999888763 22345667889999999999999999988887762211
Q ss_pred ----------------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCCHHH
Q 004791 341 ----------------------PNVHTYTVLIDCLCKENKVDEASELLNRMLEKG--LFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 341 ----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
++..+ .-+.-++.+....+....+.....+.. +.-+...|..+..+|...|++.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 12222 123334455566666666666666665 33356778899999999999999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 004791 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINE 476 (730)
Q Consensus 397 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 476 (730)
|+.+|..+.......+...|-.+..+|...|..++|.+.|++++... +.+...-..|...+.+.|+.++|.+.+..+..
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999987555567899999999999999999999999999863 33556667788899999999999999998543
Q ss_pred --------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------CcCHHHHHHHHH
Q 004791 477 --------SGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI----------------------KAGEVIYTALID 526 (730)
Q Consensus 477 --------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~li~ 526 (730)
.+..|+........+.+.+.|+.++-...-..|+.... .........++.
T Consensus 512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH
Confidence 23445555566667788888988876555554443210 001112222233
Q ss_pred HHHhcCChhHHHHHHHH------HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH---HHHHH
Q 004791 527 GYCKEGKIDDAHSLLER------MLSDDCLPNS--YTYNALIDGLYRERKVQEALLLVEKMTKMGV--KPTV---YTYTI 593 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~------~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~---~~~~~ 593 (730)
+-.+.++......-... ....+..-+. ..+.-++..+++.+++++|+.+...+.+..+ .++. ..-..
T Consensus 592 ~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~ 671 (895)
T KOG2076|consen 592 AREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFL 671 (895)
T ss_pred HHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Confidence 33333332211111110 0111111111 2345667788899999999999998886432 1222 22345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSL-GL--KP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
.+.+.+..+++..|...++.|+.. +. .| -...|+...+...+.|+-.-=.+++..+......-+.......+....
T Consensus 672 ~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 672 GLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHh
Confidence 567778899999999999999874 11 11 234566556666666654444444444443221112333333344566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 670 HLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 670 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
..|.+.-|+..+-+.... .||....+
T Consensus 752 ~~~s~~~Al~~y~ra~~~--~pd~Pl~n 777 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQ--NPDSPLIN 777 (895)
T ss_pred hccchHHHHHHHHHHHHh--CCCCcHHH
Confidence 788999999988777654 67755554
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.9e-14 Score=133.09 Aligned_cols=218 Identities=20% Similarity=0.268 Sum_probs=136.1
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhH-HHHHHHHHHHCCCCCCHHhHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING--CCKVGNVGE-AELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~-A~~~~~~~~~~g~~~~~~~~~ 242 (730)
..+.+=|.|+.. ...|.+.++--+|++|...|+..+...-..|+.. |....++-- -++.|-.|.+.|-. +..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-
Confidence 345566666654 3457788888888888888776666555555433 333333322 23455555555432 22333
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
+.|++.+ -+|+..+ .+..++.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-
T Consensus 191 -------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-- 254 (625)
T ss_pred -------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--
Confidence 3444443 3444433 35667778888888877778888888777766556777777777765432
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH-H
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEA----SELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA-A 397 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A 397 (730)
....++..+|......||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |
T Consensus 255 --~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 255 --SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred --hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 22367777777777777888888888777777776544 4566667777777777777777777777666543 3
Q ss_pred HHHHHHH
Q 004791 398 LQILDLM 404 (730)
Q Consensus 398 ~~~~~~m 404 (730)
..++.++
T Consensus 333 s~~i~dI 339 (625)
T KOG4422|consen 333 SSWINDI 339 (625)
T ss_pred HHHHHHH
Confidence 3333333
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.6e-14 Score=134.22 Aligned_cols=455 Identities=17% Similarity=0.215 Sum_probs=280.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cCChhH-HHHHHHhchhCCCCcChhhHHHHHH
Q 004791 205 TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR--NKDVEK-GFRVFMMMPKKGCRRNEVSYTNLIH 281 (730)
Q Consensus 205 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~~~~~~~~~~~~li~ 281 (730)
+=|.|++. ...|.+.++.-+|++|.+.|++.+...-..|...-+- ..++-- -.+.|-.|.+.|- .+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-----
Confidence 44445443 3457788888888888888777776666666544332 222222 2344555555442 333444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
+.|.+.+ -+|+.. +.+..+|..||.++|+--..+.|.+++++......+.+..+||.+|.+-.- ..
T Consensus 191 ---K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ---ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 3344433 223322 335677888888888888888888888887777667777888887766432 23
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH----HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHH-HHHHH
Q 004791 362 ASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA----ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHR-AMSLL 436 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~ 436 (730)
..++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 36778888888888888888888888888887665 45677788888888888888888888877766533 44444
Q ss_pred HHHHH----CCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC----CCCC---HHhHHHHHHHHHhcCCHHH
Q 004791 437 NELLE----QNLSP----TLITYNSLIYGQCREGHLDSAYKVLHLINESG----LVPD---QFTYSVFIDTLCKRGRVEE 501 (730)
Q Consensus 437 ~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~ 501 (730)
.++.. +.++| |...|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 22332 34445566667777777777777766554321 1222 2345667777788888888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------------
Q 004791 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER-------------- 567 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-------------- 567 (730)
-...|+.|+-.-.-|+..+...++.+..-.|.++-.-+++..+...|...+.....-++..+++..
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 888888887776667777777777777777777777777777766553333333333333332221
Q ss_pred ------CHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhc
Q 004791 568 ------KVQEAL-LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL----KPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 568 ------~~~~A~-~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~ 636 (730)
++.++. .--.+|.+. .-.....+.+.-.+.+.|+.++|.++|.-+.+.+- .|......-+++.-...
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 111111 111233333 33445666677777888888888888888865432 23333344555666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLK 682 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (730)
.....|...++-|...+...-...-+.+...|.-.....+|+.-+.
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l~ 620 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNLT 620 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhhh
Confidence 7788888888888776543333344455555554444444544443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.2e-12 Score=136.63 Aligned_cols=360 Identities=12% Similarity=0.080 Sum_probs=225.4
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSL 164 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (730)
.+++.+.|.+++.-+.++. +-....|..|..++-..|+.+.+...+..+. +..
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~----------------------- 203 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLN----------------------- 203 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcC-----------------------
Confidence 5699999999999888775 4467889999999999998887655443222 111
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH---
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTY--- 241 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--- 241 (730)
+.|.--|..+.....+.|.++.|.-.|.++++..+ ++....---...|-+.|+...|..-|.++....++.|..-.
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 33445677777777777888888888888887632 23333344456677788888888888888776432222111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHhchhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------------
Q 004791 242 -TSLILGYCRNKDVEKGFRVFMMMPKKGC-RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD---------------- 303 (730)
Q Consensus 242 -~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------- 303 (730)
-.++..+...++-+.|.+.++.....+. ..+...++.++..|.+...++.|......+..+.
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 2235556666777778877776665221 2344567777888888888888877776665511
Q ss_pred -----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 304 -----------CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG--CEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 304 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
..++...+ -+.-++.+....+....+.......+ +.-++..|.-+..+|...|++.+|..+|..+.
T Consensus 363 ~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 11122221 11222333333333333333333333 34456677778888888888888888888877
Q ss_pred HCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--------
Q 004791 371 EKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ-------- 442 (730)
Q Consensus 371 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------- 442 (730)
......+..+|--+..+|...|.+++|.+.|+...... +-+...-..|...+.+.|+.++|.+.+..+..-
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 76544567778888888888888888888888877653 334455556666777788888888887775421
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 443 NLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 443 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
+..|+..........+.+.|+.++-+.+...|
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12233333334445556666666544444333
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.3e-13 Score=129.37 Aligned_cols=466 Identities=13% Similarity=0.109 Sum_probs=334.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
|-....-=...+++..|..+|+++++.. ..+...|...+.+-.+...+.-|..++++.+..-+..|. .|--.+.+--.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHH
Confidence 3333333345678899999999999865 557788999999999999999999999999986433333 34445555566
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
.|++..|+++|++-.+ +.|+..+|++.|+.-.+....+.|..+|++..-. .|++.+|.-....-.+.|....|..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7999999999999876 5699999999999999999999999999998765 59999999999999999999999999
Q ss_pred HHHHHHC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhCCCHHHHHHH------
Q 004791 331 FNEMSAR-GC-EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN--VVTYNALIDGYCKEGLMEAALQI------ 400 (730)
Q Consensus 331 ~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~------ 400 (730)
|+..+.. |- ..+...+.+....-..+..++.|..+|.-.++.= +.+ ...|..+...--+.|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 9887754 11 1134556666666677888999999999988762 222 34555555544555654443332
Q ss_pred --HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHH--------HHHHhCCChhHHH
Q 004791 401 --LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI--TYNSLI--------YGQCREGHLDSAY 468 (730)
Q Consensus 401 --~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~g~~~~a~ 468 (730)
++.+.+.+ +-|-.+|-..+......|+.+...++|++++.. ++|-.. .|...| -.-....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444443 567778888888888889999999999998875 444221 122111 1123456888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 469 KVLHLINESGLVPDQFTYSVFIDTL----CKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERM 544 (730)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 544 (730)
++++..++. ++....|+..+--+| .++.++..|.+++...+.. -|...++...|..-.+.+.++....++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888887773 444556665554444 4567888888888777644 556778888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 545 LSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV 623 (730)
Q Consensus 545 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 623 (730)
++-+ |.+-.+|......-...|+.+.|..+|+-+++.. +.-....|...|+.-...|.+++|..+++++++.. +-.
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccc
Confidence 8876 5567778777777777888888888888877632 12234556666777778888888888888888752 334
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYC-----SIG-----------KLDEAEDLIVKMNR 651 (730)
Q Consensus 624 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 651 (730)
.+|-+...--. +.| ....|..+|+++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 46665554332 333 55667777777653
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.4e-12 Score=125.99 Aligned_cols=469 Identities=13% Similarity=0.101 Sum_probs=354.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIH 281 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 281 (730)
+...|.....--..++++..|..+|++++... ..+...|-..+.+-.++..+..|+.++++.... .|.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 44456555555667788999999999999865 346777888889999999999999999998873 2333345777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
+--..|++..|.++|++..+. .|+..+|++.|..-.+-+..+.|..+|+...- +.|++.+|.-.+..-.+.|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 777899999999999998875 79999999999999999999999999999886 46899999999999999999999
Q ss_pred HHHHHHHHHHC-CC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHhcCC---HHHHHH
Q 004791 362 ASELLNRMLEK-GL-FPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPN--ARTYNELICGFCKRKN---VHRAMS 434 (730)
Q Consensus 362 A~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~---~~~A~~ 434 (730)
|..+|+..++. |- ..+...+.+....-.++..++.|.-+|+-....- +.+ ...|..+...--+-|+ +++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998764 11 1123445555555566788899999998877652 222 3344444433333444 444432
Q ss_pred H-----HHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHH-----H---HhcCCH
Q 004791 435 L-----LNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ--FTYSVFIDT-----L---CKRGRV 499 (730)
Q Consensus 435 ~-----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-----~---~~~g~~ 499 (730)
- +++++..+ +-|..+|--.+......|+.+...++|++++.. ++|-. ..|...|-. + ....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2 44455543 457888888899889999999999999999875 33321 122222211 1 246789
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHH----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 500 EEAQVLFDSLEKKGIKAGEVIYTA----LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
+.+.++++..++. ++-...++.. ......++.++..|..++...+. ..|...+|...|..-.+.++++.+.++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 3323444444 44445678999999999988764 468899999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL-KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
|++.++.+ +.+-.+|......-...|+.+.|..+|+-+++... ......|.+.|+--...|.++.|..+++++++..
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt- 537 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT- 537 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc-
Confidence 99999987 66888999888888899999999999999987531 2235578888888889999999999999999853
Q ss_pred CCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 004791 655 VPDSVTYTLLICAYA-----HLG-----------LIYSAFDVLKRMF 685 (730)
Q Consensus 655 ~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 685 (730)
+...+|.....-=. +.| ....|.++|++..
T Consensus 538 -~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 538 -QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred -ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 55557766654332 334 5677888888775
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.8e-13 Score=129.67 Aligned_cols=457 Identities=16% Similarity=0.114 Sum_probs=281.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 175 LMQLSKFHLVDEMKRVYLEMLDNMVVPNI----YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
...+.+.+.+..|+..|+-+++.-+..+. ...+.+...+.+.|.+++|+.-|+...+. .|+..+--.|+-++..
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 34566778899999999888775322222 24455556778999999999999998875 4776665556666667
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHH--------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYT--------NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~--------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
-|+-++..+.|.+|...-..+|..-|. .|+.--.+. +.++.|.+++ + .
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n-------d~lk~~ek~~-k----------------a 377 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN-------DHLKNMEKEN-K----------------A 377 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh-------HHHHHHHHhh-h----------------h
Confidence 899999999999998754334433221 111111100 1222232221 0 1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHT-YTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQIL 401 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (730)
+.++++-.-.+++.--+.|+-.. |.--+..+-.....+.|.++ +| .-..-|.++|+++.|.+++
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--ei-------------~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--EI-------------NKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--hh-------------hHHHHHHhccCHHHHHHHH
Confidence 12222222222222222222110 00001111001111111111 00 1122366778888888887
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 004791 402 DLMKSNNCSPNARTYNELICGFCK--RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479 (730)
Q Consensus 402 ~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 479 (730)
+-..+.+-......-+.|-..+.- ..++.+|.+.-+..+... .-+......-.+.-...|++++|.+.+++.+...-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 777655322222222222222222 334556665555544321 11222222222333456888888888888876532
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNAL 559 (730)
Q Consensus 480 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 559 (730)
.-....|+ +.-.+...|++++|++.|-++...- ..+..+...+.+.|-...+...|++++.+.... ++.|+..+..|
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 22222222 2334667889999999888776542 226677778888898899999999999887654 47788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY-CSIGK 638 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~ 638 (730)
...|-+.|+-.+|.+++-+--+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999998887655443 477899999999999999999999999998865 578999998887654 67899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 639 LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
++.|.++++...++ ++.|.....-|++.+...|.. ++.++-
T Consensus 676 yqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~ 716 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYA 716 (840)
T ss_pred HHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHH
Confidence 99999999998875 566888888899888887743 344433
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-12 Score=123.77 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=269.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH--H
Q 004791 305 RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTY--N 382 (730)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~ 382 (730)
..|...+-...-.+.+.|....|++.|......-+- ....|..|.... .+.+.+ ..... |...|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHH
Confidence 445555555666667788999999999888765221 444444444332 222222 22222 122121111 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHh
Q 004791 383 ALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL--SPTLITYNSLIYGQCR 460 (730)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 460 (730)
-+..++-...+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 24455666668888888888888888766666666666677788899999999999988731 1255667666543222
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSL 540 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 540 (730)
... +..+-+-.-.--+-.+.|...+.+.|.-.++.++|...|++.++.++. ....|+.+..-|....+...|++-
T Consensus 312 ~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 111211111101223457778888899999999999999999998765 677899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
++..++.+ |.|-..|-.|.++|.-.+...-|+-+|++..+.. +.|...|..|+++|.+.++.++|++.|......|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99999876 7788999999999999999999999999999865 66899999999999999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR----EGIVPD--SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 621 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
.+...+..|...|-+.++.++|...+++.++ .|...+ .....-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3667899999999999999999999888765 243223 222233555677888999988877666543 55555
Q ss_pred HHHHHHHHHHc
Q 004791 695 TYAFLIKHLSN 705 (730)
Q Consensus 695 ~~~~l~~~l~~ 705 (730)
--..|++.+.+
T Consensus 542 eak~LlReir~ 552 (559)
T KOG1155|consen 542 EAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHH
Confidence 56666655543
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-11 Score=119.32 Aligned_cols=385 Identities=11% Similarity=0.011 Sum_probs=274.5
Q ss_pred CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhH
Q 004791 268 GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PNVHTY 346 (730)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ 346 (730)
+...|+..+-.....+-+.|..+.|++.|......- |-.-.+|..|.... .+.+. .......+.. .....=
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHhcCcccchHHHH
Confidence 334566655556666778899999999998887652 33444554444332 22222 2222221111 111112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCChhcHHHHHHHHH
Q 004791 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNC--SPNARTYNELICGFC 424 (730)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~ 424 (730)
--+..++-...+.+++..-.+.....|++.+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234556666778889999888888888876666666666667778899999999999998731 125567776664322
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004791 425 KRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQV 504 (730)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 504 (730)
...+ +..+.+-.-.--+--+.|...+.+.|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+
T Consensus 311 ~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 122211111101123467777888899999999999999999987533 56778888999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004791 505 LFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV 584 (730)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 584 (730)
-++.+++.++. |-..|-.|.++|.-.+.+.-|+-.|++..+.. |.|...|.+|...|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999998765 88999999999999999999999999999875 7789999999999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
..+...+..+...|-+.++.++|...|++.++. |...+ ......|..-+.+.+++++|..+......-
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------ 536 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ 536 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------
Confidence 457788999999999999999999999888762 33322 223334556677888888887776665542
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.-..++|..+++++..
T Consensus 537 ------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRK 552 (559)
T ss_pred ------------CchHHHHHHHHHHHHH
Confidence 2234677777777764
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=1.8e-12 Score=134.46 Aligned_cols=522 Identities=15% Similarity=0.096 Sum_probs=303.4
Q ss_pred cccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
+.|+.++|..+|..||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+. .|-..+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 7899999999999999999999998 8888876666667788999999998888888776 578889999
Q ss_pred HHHHHHhcCChhHHHHHHHh-ch-------hCCCCcChh--------------hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 244 LILGYCRNKDVEKGFRVFMM-MP-------KKGCRRNEV--------------SYTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~-m~-------~~~~~~~~~--------------~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
|..+|.+.||+.. .+..++ |. ..|+...+. .-...+....-.|-.+.+++++..+..
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999765 222222 21 122111000 011223333445556666666655543
Q ss_pred CC-CCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 004791 302 DD-CRPTVRTYTVVIFGLCRV-GRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVV 379 (730)
Q Consensus 302 ~~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 379 (730)
.. ..|..+ .++-+... ..+++-..+.+...+ .|+..+|..++++-...|+++.|..++.+|.+.|++.+..
T Consensus 168 sa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 168 SAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred ccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 21 111111 23333332 233444444433333 5799999999999999999999999999999999998988
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQC 459 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 459 (730)
-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+..+.++|....+.. |. +....+++-...-.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAHGFTAAVRSAA 308 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhhhhhHHHHHHH
Confidence 88877766 78888899999999999999999999988887777655332221 11 12222222222212
Q ss_pred hCC-----Chh-----HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CcCHHHHHHHHH
Q 004791 460 REG-----HLD-----SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI---KAGEVIYTALID 526 (730)
Q Consensus 460 ~~g-----~~~-----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~ 526 (730)
-.| +.+ -....+.+..-.|+......|...+... .+|+-++..++...+..-.. ..++..+..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 222 111 1112222222234444445555444433 25766676666666543211 112334444444
Q ss_pred HHHhcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-------CCCHHHHHH
Q 004791 527 GYCKEGKIDDAHSLLE--RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGV-------KPTVYTYTI 593 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~-------~~~~~~~~~ 593 (730)
.|.+.-+..-...++. +.+... .+.....-+..... .-+...+.+.+..... ... .+-...-+.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 4333211110000000 111100 00000011111111 1112222222211110 000 111223345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhc
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG--IVPDSVTYTLLICAYAHL 671 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~ 671 (730)
++..++..-+..+++..-++....-+ ...|..|++-++...+.+.|..+.++..... +..|..-+..+.+.+.+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 55666666666666655554443211 1468888888888888888888888876432 233566677888888888
Q ss_pred CCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHcCChhhhhhhccchhhhHHH
Q 004791 672 GLIYSAFDVLKRMFDAGC-EPS-HHTYAFLIKHLSNKKVDERKQQCDGILFGFKC 724 (730)
Q Consensus 672 g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~l~~~~~~e~~~~~~~~l~~~~~ 724 (730)
+....+.++++++.+.-. .|. ..+...++......|++|..++..++|-++..
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 888888888888865322 232 34556677777778888888888888877543
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-11 Score=122.57 Aligned_cols=285 Identities=15% Similarity=0.064 Sum_probs=186.6
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004791 411 PNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFI 490 (730)
Q Consensus 411 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 490 (730)
.+........+-+...+++.+..++.+++.+.. ++....+..-|..+...|+..+-..+-.++.+.- +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344444555555666777777777777777652 3344444444556666777666666666666642 33556677776
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ 570 (730)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 570 (730)
-.|...|+..+|++.|.+....+.. =...|-.+...|.-.|..++|+..+....+.- +-....+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 6666777777777777776655433 22467777777777777777777777665531 112222233444566677778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C-CCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 571 EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GL-K-PDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 571 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~-p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
-|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. +. . --..+++.|+.+|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888887777643 456777777776666777788888777776631 00 0 123457778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 645 LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 645 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
.+++.+... +.|..++.+++-.|...|+++.|++.|.+.+. +.|+..+...+++..
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 888887753 44777888888888888888888888888774 577776666666544
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.64 E-value=1e-09 Score=110.46 Aligned_cols=526 Identities=14% Similarity=0.138 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHH
Q 004791 110 ESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKR 189 (730)
Q Consensus 110 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (730)
..|...++.+.+.|+.-.-+..+.+.+.+.+ +.-....|...+.-....+.++-+.+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----------------------vtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALP-----------------------VTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----------------------hHhhccchHHHHHHHHhCCChHHHHH
Confidence 3455555566666666555555555544322 11123457777777777788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHhHHHHHHHHHhcCChhH---HHHH
Q 004791 190 VYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAG------LSPDTFTYTSLILGYCRNKDVEK---GFRV 260 (730)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~---A~~~ 260 (730)
+|++-++. .| ..-+-.|..+++.++.++|.+.+..++... .+.+...|..+-+...+.-+.-. .-.+
T Consensus 160 vyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 160 VYRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH
Confidence 88888864 23 336677788888888888888887775321 13344556666665555433322 2223
Q ss_pred HHhchhCCCCcC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------
Q 004791 261 FMMMPKKGCRRN--EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG---------------- 322 (730)
Q Consensus 261 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------------- 322 (730)
++.+...- +| ...|++|++-|.+.|.+++|.++|++.... ...+.-|+.+.+.|....
T Consensus 236 iR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 236 IRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred HHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 33333211 23 346888888888888888888888887654 223444444444443321
Q ss_pred ------CHHHHHHHHHHHHHCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hh
Q 004791 323 ------RKSEALEFFNEMSARGC-----------EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN------VV 379 (730)
Q Consensus 323 ------~~~~A~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~ 379 (730)
+++-.+.-|+.+..... ..++..|..-+.. ..|+..+-...|.+.++. +.|. ..
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 11222333333333211 1133344333322 346677777788887764 2222 34
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPN---ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSP---------- 446 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 446 (730)
.|..+.+.|-.+|+++.|..+|++..+-..+.- ..+|......-.+..+++.|+++++......-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 678888999999999999999998876543221 3455555666667788899999888765431111
Q ss_pred -------ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-
Q 004791 447 -------TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE- 518 (730)
Q Consensus 447 -------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 518 (730)
+...|...++.....|-++....+++.+.+..+- ++.........+-...-++++.+++++-+..-..|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 2345666677777788888888899988886543 3333333333455666788888888877665444443
Q ss_pred HHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCC--HHHH
Q 004791 519 VIYTALIDGYCK---EGKIDDAHSLLERMLSDDCLPNSYTYNALIDG--LYRERKVQEALLLVEKMTKMGVKPT--VYTY 591 (730)
Q Consensus 519 ~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~ 591 (730)
.+|+..+.-+.+ .-+++.|..+|++.++ +++|...-+-.|+.+ --+.|-...|+.+++++... +++. ...|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~my 625 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 467766655543 3468899999999998 667654433333322 23568888899999887653 3332 3557
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT---YTAFIQAYCSIGKLDEAEDLIVKMNREGIVP--DSVTYTLLIC 666 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~ 666 (730)
|..|.-....=-+...+++|++.++. -||... ..-....-++.|..+.|..++....+. ..| +...|.+.=.
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHH
Confidence 77666554444455667778887775 344332 334445567889999999998877664 234 5677777766
Q ss_pred HHHhcCCHH
Q 004791 667 AYAHLGLIY 675 (730)
Q Consensus 667 ~~~~~g~~~ 675 (730)
-=.++|+-+
T Consensus 703 FEvrHGned 711 (835)
T KOG2047|consen 703 FEVRHGNED 711 (835)
T ss_pred HHHhcCCHH
Confidence 677888843
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.2e-11 Score=119.66 Aligned_cols=480 Identities=13% Similarity=0.030 Sum_probs=307.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
+..+++-+....++..|.-+-++....+..| ...--+..+++-.|+++.|..+...-.-. ..|..+.......+.+
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 3334444445566777777666666555333 33344666777777777776665544221 2466677777777778
Q ss_pred cCChhHHHHHHHhchh--CCCCcChhh---------------HHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 004791 251 NKDVEKGFRVFMMMPK--KGCRRNEVS---------------YTNL-------IHGLCEAKRVDEALDLFRRMGEDDCRP 306 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~--~~~~~~~~~---------------~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~ 306 (730)
..++++|..++..... ..+..+..+ -+.- ...|....+.++|...|.+....
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---- 170 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA---- 170 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----
Confidence 8888888887773211 001011111 0000 11233344455555555555443
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC----EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYN 382 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 382 (730)
|...|..+...-.. ..-.+.+.++.+..... ..++.....+.....-...-++....-++-.-.+...+.....
T Consensus 171 D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 23333222111110 01112122222221110 0111111111111100000011111111011112334566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 383 ALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREG 462 (730)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 462 (730)
.-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++.+. .+..+.+|.++.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 67777888999999999999998875 667777777788888899888888887888776 4557889999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLE 542 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 542 (730)
+..+|.+.|.+....+.. =...|-.+...|+-.|..|+|...+..+-+.-+. ...-+--+.--|.+.++.+.|...|.
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999987654322 2357888899999999999999999887765221 22223344556888999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 543 RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM----G--VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 543 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+..... |.|+..++-+.-.....+.+.+|..+|+..+.. + ..-...+++.|+.+|.+.+.+++|+..+++.+.
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 988764 678888888888888889999999999887731 1 112456788999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 617 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
...+ +..++.+++-.|...|+++.|++.|.+... +.||..+...++..+
T Consensus 484 l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 484 LSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred cCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 7544 888999999999999999999999999987 678876666665543
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.1e-11 Score=120.57 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=176.7
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHH
Q 004791 458 QCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDA 537 (730)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 537 (730)
+.-.|+.-.|.+-|+..+.....++. .|-.+..+|....+.++....|....+.++. ++.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34567888899999988887544333 2666677899999999999999999988766 777888888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
..-|++.+..+ +.+...|-.+.-+..+.+++++++..|++.++. ++.-+..|+.....+..++++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999876 556777888877888899999999999999875 4667889999999999999999999999999875
Q ss_pred CCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 618 GLK-----PDVYTY--TAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 618 ~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
... .+...+ -.++- +.-.+++..|..++.+..+. .| ....|..|...-...|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 112111 12221 22348899999999999984 45 577899999999999999999999998864
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=3.5e-12 Score=132.01 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=101.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
.+.|+++.|.+.+.++.+....+...........+...|++++|...++++.+..+. +......+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 444555555555544443321111111112234444455555555555554444322 3444444445555555555555
Q ss_pred HHHHHHHhCCCCCCh-------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 004791 399 QILDLMKSNNCSPNA-------RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVL 471 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 471 (730)
+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555443321111 01111111111122222233333322211 1223334444444444444544444444
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004791 472 HLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP 551 (730)
Q Consensus 472 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 551 (730)
++..+. .++.... ++.+....++.+++.+..+...+..+. |...+..+...+.+.+++++|.+.|+...+.. |
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P 359 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--P 359 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 444432 2222111 111122234444444444444444332 34444444445555555555555555544432 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
+...+..+...+.+.|+.++|.+++++.
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444555555554444443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=5.7e-12 Score=131.24 Aligned_cols=131 Identities=16% Similarity=0.002 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYT---YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV--YTY 626 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~ 626 (730)
+...+..+...+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+..+. |. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 55566666666666666666666666666543 22221 111111222345666777777776664322 34 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.++.+.+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777777777777777743322245777777777777777777777777777654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=7e-12 Score=129.77 Aligned_cols=289 Identities=15% Similarity=0.082 Sum_probs=142.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHH--HHHHHHHhcCCHHHH
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVT-YNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYN--ELICGFCKRKNVHRA 432 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~A 432 (730)
.|++++|++.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666655544431 11222 222233335666666666666666554 33332222 224455556666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512 (730)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 512 (730)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------------
Confidence 66666665543 224445555555666666666666666655554332111 111000
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 513 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
...|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++..+. ++|....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 001111122222222333333344333222 1334555555555666666666666666555552 3343221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
++.+....++.+++++..++..+..+. |...+..+...+.+.|++++|.+.|+++.+ ..|+...+..+..++.+.|
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcC
Confidence 122222345666666666666554322 444555666666666666666666666665 3466666666666666666
Q ss_pred CHHHHHHHHHHHH
Q 004791 673 LIYSAFDVLKRMF 685 (730)
Q Consensus 673 ~~~~A~~~~~~m~ 685 (730)
+.++|.+++++-+
T Consensus 376 ~~~~A~~~~~~~l 388 (398)
T PRK10747 376 KPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666554
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=5.8e-12 Score=131.22 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 285 EAKRVDEALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEAS 363 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (730)
..|+++.|.+.+.+..+.. |+ ...+-.......+.|+++.|.+.+.+..+....+...........+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566666666666655442 22 23333445555566666666666666554432222223333455555666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004791 364 ELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNN 408 (730)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 408 (730)
..++.+.+..+. +..++..+...+.+.|++++|.+++..+.+.+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 666666655432 44555556666666666666666666665553
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=9.7e-09 Score=103.65 Aligned_cols=535 Identities=13% Similarity=0.124 Sum_probs=360.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM-VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
+..|-..+..+.++|++..-+..|++++..- +......|...+......+-.+-+..++++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 4678888888899999999999999998763 2334458999999999999999999999999885 4445778899
Q ss_pred HHHhcCChhHHHHHHHhchhCC------CCcChhhHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCC--hhhHHHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKG------CRRNEVSYTNLIHGLCEAKRVD---EALDLFRRMGEDDCRPT--VRTYTVVI 315 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~--~~~~~~li 315 (730)
.+++.+++++|.+.+..+.... .+.+-..|..+-+...++-+.- ....+++.+..+ -+| ...|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 9999999999999998876522 2334456766666665543322 334455555443 234 35799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCC
Q 004791 316 FGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN----------------------KVDEASELLNRMLEKG 373 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~~~~~g 373 (730)
+.|.+.|.++.|.++|++.+.. ...+.-|+.+.+.|+.-. +++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998875 224445555555554321 1233344444444432
Q ss_pred C-----------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------ChhcHHHHHHHHHhcCCHHHHHHHH
Q 004791 374 L-----------FPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSP------NARTYNELICGFCKRKNVHRAMSLL 436 (730)
Q Consensus 374 ~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~ 436 (730)
. +.++..|..-+. +..|+..+-...|.+..+. +.| -...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 123334433333 3356777778888877653 122 2345788889999999999999999
Q ss_pred HHHHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC----------C-------CHHhHHHHHHHHHhc
Q 004791 437 NELLEQNLSPT---LITYNSLIYGQCREGHLDSAYKVLHLINESGLV----------P-------DQFTYSVFIDTLCKR 496 (730)
Q Consensus 437 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~li~~~~~~ 496 (730)
++..+-..+-- ..+|..-...-.+..+++.|+++++......-. | +...|..+++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987654322 345666666667778899999988876542111 1 234567777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YTYNALIDGLYR---ERKVQEA 572 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~~~~~~A 572 (730)
|-++....+++.+++..+. ++.+.......+-.+.-++++.+.+++-+..-..|++ ..|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999988665 4444444445556677789999999887776545655 356666655543 3478999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 573 LLLVEKMTKMGVKPTVYTYTILI--EEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 573 ~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
..+|++.++ |.+|...-+-.|+ ..--+.|-...|+.+++++... +++. ...|+..|.--...=-...-..++++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999999 6666543332222 2334578899999999997653 3332 34577766543332224556788888
Q ss_pred HHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCChhhhhhhccchh
Q 004791 649 MNREGIVPDSVTYT---LLICAYAHLGLIYSAFDVLKRMFDAGCEP--SHHTYAFLIKHLSNKKVDERKQQCDGIL 719 (730)
Q Consensus 649 m~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~l~~~~~~e~~~~~~~~l 719 (730)
+++. -||..+-. -....=++.|..+.|..++.-..+. +.| +...|.+-=..=.+.|+.+-.++...+=
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keMLRik 720 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIK 720 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8883 56654433 2334457789999999998877653 344 3444555555556778766666554443
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.9e-11 Score=117.62 Aligned_cols=223 Identities=16% Similarity=0.115 Sum_probs=171.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 423 FCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
+.-.|+...|..-|+..++....+ ...|.-+...|....+.++..+.|....+.+.. +..+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888764332 222777778888899999999999988886543 556676667777778899999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
..=|++.+...+. +...|-.+.-+..+.+++++++..|++..+. +|..+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999887654 6677777777778899999999999998876 4677889999999999999999999999998864
Q ss_pred C-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 583 G-----VKPTVYTY--TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 583 ~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
. +..+...+ -.++-. --.+++..|.++++++.+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 11122222 111111 1348999999999999987655 566899999999999999999999998775
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1e-14 Score=144.31 Aligned_cols=261 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVP-NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
.+...+.+.|++++|+.++.+.......| |...|..+.......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555666677777777775444332122 3334444444555566677777777766665432 34445555555 466
Q ss_pred CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 252 KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD-CRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 252 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
+++++|.++++...+.. ++...+..++..+.+.|+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665554322 444555556666666666666666666654321 234555566666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCS 410 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 410 (730)
+++.++..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 6666665433 45556666666666666666666666555442 2344555566666666666666666666665542 3
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 411 PNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 411 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
.|..+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 355555666666666666666666655543
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.2e-14 Score=143.80 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQN-LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR 498 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 498 (730)
...+.+.|++++|++++.+..... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555554333222 1223333444444444455555555555555544322 33334444444 45555
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDD-CLPNSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
+++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666655555544332 233444555555666666666666666654321 23445555566666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 578 KMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+.++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 666543 3345556666666666666666666666555532 2234455666666666666666666666666533 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 658 SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
......++.++...|+.++|.++.++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666666666666666666554
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.8e-12 Score=131.17 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=135.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
.+.+|..+.++|.-+++.+.|++.|++.++.++. ...+|+.+..-+.....+|.|...|+..+..+ +-+...|--+.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhh
Confidence 4566777777777777777777777777765433 45666666666677777777777777766543 222334445556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.|.+.++++.|.-.|+++.+.+ +-+.+....++..+-+.|+.++|+++++++...+.+ |...-...+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHH
Confidence 6777777777777777777655 446666667777777777777777777777776544 44444455566667778888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 642 AEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 642 A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
|+..++++++ +.| +...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 576 al~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 576 ALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 8888888777 445 3566777777788888888887777777654
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.7e-11 Score=113.19 Aligned_cols=287 Identities=17% Similarity=0.148 Sum_probs=190.7
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhCCC
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL------ITYNSLIYGQCREGH 463 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~ 463 (730)
-..+.++|.++|-+|.+.+ +.+..+.-+|.+.|.+.|.+|+|+++.+.+.++ ||. .....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3567888888888888753 334555667888888888888888888888775 332 234556777788888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCChhHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE----VIYTALIDGYCKEGKIDDAHS 539 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 539 (730)
+|.|..+|..+.+.+. --......++..|-...++++|+++-+++.+.+..+.. ..|..|...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8888888888776432 23456677777888888888888888877776544332 245556666666777788888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 540 LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
++.+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+...
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 888877765 4445555566677777888888888888777765444456667777788888888888888877777543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH---LGLIYSAFDVLKRMFD 686 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 686 (730)
.++. -..+...-....-.+.|..++.+-... +|+...+..|+..... .|...+-+..+++|..
T Consensus 281 g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3332 233333333333345555555444442 5777777777765433 3456666667777764
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.2e-12 Score=132.42 Aligned_cols=200 Identities=14% Similarity=0.055 Sum_probs=118.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
.+.+|..+.+.|.-+++.+.|++.|++..+.+. -...+|+.+..-+.....+|.|...|+..+...+. +...|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 445566666666666666666666665555321 13455555555555556666666666666554332 3344455566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 606 (730)
.|.+.++++.|+-.|+++++.+ |.+.+....+...+.+.|+.++|+.+++++.... +.|+..-...+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHH
Confidence 6666666666666666666655 4455555556666666666677777766666554 3344444445555566667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|+..++++.+.-+ .+..++..++..|.+.|+.+.|+.-|.-|.+
T Consensus 576 al~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 7777777666421 1455566666677777777777666666665
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.5e-10 Score=108.03 Aligned_cols=411 Identities=15% Similarity=0.153 Sum_probs=174.4
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
.++...|++++|...+..+.+.. .++...+..|.-++.-.|.+.+|..+-.+..+ +...-..+...-.+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 34445555555555555444322 23444444455555555555555555443322 2223333444444555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhCCCHHHHHHHHHHH
Q 004791 326 EALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNA-LIDGYCKEGLMEAALQILDLM 404 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m 404 (730)
+-..+...+... ..--.+|.......-.+.+|++++..++..+ |+....|. +.-+|.+..-++-+.++++-.
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 555544444321 1222334444444445566666666655432 22222222 223344555555555555554
Q ss_pred HhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhCCC
Q 004791 405 KSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCRE-----GHLDSAYKVLHLINESGL 479 (730)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~ 479 (730)
... ++.++...|..+....+.=.-..|.+-..++.+.+-.. ...+.-.++. .+-+.|++++--+.+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 443 12223333443333333222222222223332221100 0112222222 2334555555444332
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHhCCCCCCH-
Q 004791 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL-----IDGYCKEGKIDDAHSLLERMLSDDCLPNS- 553 (730)
Q Consensus 480 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 553 (730)
- +.....++-.|.+.+++.+|..+.+++... .|-..+...+ .+-........-|...|+-.-..+..-|.
T Consensus 284 I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 1 112223344455666666666655444321 1111111111 11111112233344444333222211111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTY-TAFIQA 632 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 632 (730)
.--.++.+.+.-..++++.+.+++.+...-...|...+| +..+++..|++.+|+++|-++....++ |..+| ..|.++
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArC 437 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARC 437 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHH
Confidence 112233344444455666666666555543333333333 455666666666666666555433333 33344 334456
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 633 YCSIGKLDEAEDLIVKMNREGIVPDS-VTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|.+.|+.+.|++++-++.. +.+. .....+..-|.+.+.+--|-+.|+.+..
T Consensus 438 yi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 6666666666655544432 1122 2233334456666666666666665543
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.9e-11 Score=110.74 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=193.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh------hcHHHHHHHHHhcCCH
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA------RTYNELICGFCKRKNV 429 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~ 429 (730)
..+.++|.++|-+|.+.... ...+.-+|.+.|-+.|..|.|+++...+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35678888888888775222 4455567888888888888888888877764 332 2234556667788888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHH
Q 004791 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ----FTYSVFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 505 (730)
|.|..+|..+.+.+. .-......|+..|-...+|++|+++-+++...+..+.. ..|..+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888877532 23455667788888888888888888877776544332 2344555555566788888888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004791 506 FDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVK 585 (730)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 585 (730)
+.+..+.+++ .+..--.+.+.+...|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 8888777544 4555556777788888888888888888877633334567778888888888888888888877753
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC
Q 004791 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC---SIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~ 652 (730)
+....-..+...-....-.+.|...+.+-+.. +|+...+..++..-. ..|+..+-..+++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333344444444444555666655555443 577777777776553 345566667777777654
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=7.1e-10 Score=115.66 Aligned_cols=266 Identities=17% Similarity=0.127 Sum_probs=150.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHh--hcCCccccccCHHhHHHHHHHH
Q 004791 101 QKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVN--ESGSEFSLKLSVKGYNTLLMQL 178 (730)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 178 (730)
+..|..|+..+|.++|..|+..|+.+.|- ++..|-......+. -++..+..-. .+..+-.-.|...+|..|..+|
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e--~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVRE--GVFRGLVASHKEANDAENPKEPLADTYTNLLKAY 93 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccc--hhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence 34678889999999999999999998887 55444322211111 1111111110 0111111245667777777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCChhHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQ-AGLSPDTFTYTSLILGYCRNKDVEKG 257 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A 257 (730)
.+.|++.. ++..++ -...+...+...|.-..-..++..+.- .+.-||.. .++....-.|-++.+
T Consensus 94 r~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaql 158 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQL 158 (1088)
T ss_pred HhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHH
Confidence 77777665 222221 111223333333433333333332211 11222322 233334455667777
Q ss_pred HHHHHhchhCCCCcChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 258 FRVFMMMPKKGCRRNEVSYTNLIHGLCE-AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 258 ~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
++++..++.......... +++-... .-.+++-..+.....+ .|+..+|..++..-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 777766654332111111 1222222 2223333333333332 47888888888888888888888888888888
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
.|+..+..-|-.|+-+ .++..-++.++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777766666655 67777788888888888888888888877777776655
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=4.7e-10 Score=107.18 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=159.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 286 AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 286 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 365 (730)
.|++..|+++..+-.+.+-. ....|..-+.+--+.|+.+.+-.++.+..+....++...+.+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68888888888887766522 35566667777778889999998888888775566777788888888888999999888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-------cHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 366 LNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNAR-------TYNELICGFCKRKNVHRAMSLLNE 438 (730)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~~~~ 438 (730)
..++.+.+.. ++.+......+|.+.|++.+...++..|.+.|.-.+.. +|..++.-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888887654 67777888888889999999888888888876443322 233333333333333332233332
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 004791 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE 518 (730)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 518 (730)
...+ ...++..-..++.-+.++|+.++|.++.++..+++..|.. ..++ .+.+-++.+.-++..+...+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 2221 1222333333444444444444444444444444333321 1111 122333333333333333333211 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
..+.+|...|.+.+.+.+|...|+..++.+ |+..+|+.+.+++.+.|+.++|.+++++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444444444444444444444444443332 44444444444444444444444444443
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=2.4e-09 Score=108.35 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHL 671 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 671 (730)
.++..+-+.|+++.|...++.++.+ .|+ ...|..-.+.+...|.+++|..++++..+.+ .+|...-..-+.-..++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 4455566667777777777666654 333 2234444566666677777777777666644 33433322334444556
Q ss_pred CCHHHHHHHHHHHHHcC
Q 004791 672 GLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 672 g~~~~A~~~~~~m~~~g 688 (730)
++.++|.++.-.....|
T Consensus 453 n~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREG 469 (700)
T ss_pred cccHHHHHHHHHhhhcc
Confidence 66666666666665444
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.7e-10 Score=108.81 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=177.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQI 400 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (730)
.|++..|.+...+-.+.+.. ....|..-+.+.-..|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58888888888877666544 34556666777777888888888888887764445666777777888888888888888
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 004791 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV 480 (730)
Q Consensus 401 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 480 (730)
.+++.+.+ +.+..........|.+.|++.+...++.++.+.+.-.+...-..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 88887765 55667777788888888888888888888888765444321000
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
...+|..+++-....+..+.-...++....+ .+-++.+-..++.-+.++|+.++|.++.++.++.+..|. -...
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHH
Confidence 0112233333222223333323333333222 122344445555555666666666666666555543333 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
-.+.+.++.+.-++..++..+.. +.++-.+.+|+..|.+.+.|.+|.+.|+...+. .|+..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 22334555555555555554432 334456666666666666666666666655553 456666666666666666666
Q ss_pred HHHHHHHHHHH
Q 004791 641 EAEDLIVKMNR 651 (730)
Q Consensus 641 ~A~~~~~~m~~ 651 (730)
+|.+..++...
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=7.8e-09 Score=104.72 Aligned_cols=456 Identities=14% Similarity=0.115 Sum_probs=263.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRV 260 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 260 (730)
.+++...+...+.+++. ..-...|.....-.++..|+-++|.......++..+. +.+.|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 35666666666666653 2223334433344455668888888877777765443 566777777777777788888888
Q ss_pred HHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 004791 261 FMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG-C 339 (730)
Q Consensus 261 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 339 (730)
|......+ +.|...|.-+.-.-.+.|+++.....-.+..+.. +.....|...+.++.-.|++..|..+.++..+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88776643 2455666666666667777777777666666543 3345567777777777888888888888777653 2
Q ss_pred CCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh
Q 004791 340 EPNVHTYTVLI------DCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA 413 (730)
Q Consensus 340 ~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 413 (730)
.|+...|.-.. ....+.|..++|.+.+...... +.-....-.+-...+.+.+++++|..++..+... .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 34544443322 3345567777777766554432 1112222334456677788888888888888877 3555
Q ss_pred hcHHHH-HHHHHhcCCHHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004791 414 RTYNEL-ICGFCKRKNVHRAM-SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID 491 (730)
Q Consensus 414 ~~~~~l-i~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 491 (730)
..|... ..++.+-.+.-++. .+|....+. .+.....-..=+.......-.+..-+++..+.+.|+++- +..+..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~S 328 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHH
Confidence 555443 33443333333343 455544432 111110000001111112223334455666677776532 233332
Q ss_pred HHHhcCCHHHHHHHHHHHHH----cC----------CCcCHHHHHH--HHHHHHhcCChhHHHHHHHHHHhCCCCCC-HH
Q 004791 492 TLCKRGRVEEAQVLFDSLEK----KG----------IKAGEVIYTA--LIDGYCKEGKIDDAHSLLERMLSDDCLPN-SY 554 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 554 (730)
.|-.-...+-..++.-.+.. .| -+|....|+. ++..|-+.|+++.|..+++..+... |+ +.
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHH
Confidence 22221111111111111110 00 1345555544 5666778888888888888887653 44 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--C----HHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--D----VYTYTA 628 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~~~~~ 628 (730)
.|..-...+...|++++|..++++..+.+ .+|...-.-.+.-..++.+.++|.++.......|... + .-+|-.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 56666677888888999988888888876 5777666667777778888888888888887766411 1 111222
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHH
Q 004791 629 F--IQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 629 l--~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+ +.+|.++|++.+|++-|....
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1 346777777777776655543
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.8e-09 Score=99.72 Aligned_cols=453 Identities=12% Similarity=0.073 Sum_probs=263.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004791 178 LSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKG 257 (730)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 257 (730)
+...+++..|+.+++-....+-.-...+-..+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34457788888887766654433222344456677778899999999998887643 45666666666666677888888
Q ss_pred HHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 258 FRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 258 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
..+-....+ ++-.-..|.+.-.+.++-++-..+-..+.+. ..---++.......-.+.+|++++...+..
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888766543 3334444555566677766666665555432 222334445555556788999999988876
Q ss_pred CCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcH
Q 004791 338 GCEPNVHTYTV-LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTY 416 (730)
Q Consensus 338 ~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 416 (730)
+. +-...|. +.-+|.+..-++-+.+++.-.++. ++-++...|..+....+.=.-..|.+-.+.+...+-.. |
T Consensus 181 n~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 NP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred Ch--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 42 3333333 445667777788888888777765 33345555555544444322233333334444332110 1
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004791 417 NELICGFCKR-----KNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID 491 (730)
Q Consensus 417 ~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 491 (730)
..+.-+++. .+-+.|++++-.+.+. -| ..-..|+-.|.+.+++.+|..+.+.+.- ..|-......++.
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 122222322 2345667766655542 12 2333456667788888888877765432 1232222222221
Q ss_pred H-----HHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 492 T-----LCKRGRVEEAQVLFDSLEKKGIKAGE-VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 492 ~-----~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
+ ........-|.+.|+-.-..+..-|. .-...+...+.-..++++.+..+..+..--...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 1 11122344556666555444332222 223445555555667777777777766543334444444 6777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTY-TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT-YTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 643 (730)
.|++.+|.++|-.+....++ |..+| ..+..+|.+.|..+-|++++-++- .+.+..+ ...+..-|.+.+.+=-|-
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776654443 34444 455677788888888877765542 2223333 334456677888887888
Q ss_pred HHHHHHHHCCCCCCHHHHH
Q 004791 644 DLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 644 ~~~~~m~~~g~~~~~~~~~ 662 (730)
+.|+.+.. ..|++..|.
T Consensus 482 KAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 482 KAFDELEI--LDPTPENWE 498 (557)
T ss_pred HhhhHHHc--cCCCccccC
Confidence 88888776 457766664
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-09 Score=110.30 Aligned_cols=486 Identities=14% Similarity=0.092 Sum_probs=258.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING---CCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEK 256 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 256 (730)
+.+..++++.-|......+...+..++-.+-.. |...|+.+++ .+...+... .-|....+.+.+..
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es-~i~Re~~~d~ilsl--------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEES-LIPRENIEDAILSL--------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhh-ccccccHHHHHHHH---------
Confidence 456677788888777777666666555554433 2344555544 222222111 11111111111100
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
.-.+.++....+..|...|..|.-++...|+++.+.+.|++....- ......|+.+...|...|.-..|..++++-..
T Consensus 308 -m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 -MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 0112222222233455555566666666666666666666654331 22345566666666666666666666655544
Q ss_pred CCCCCC-hhhHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhC-----------CCHHHHHH
Q 004791 337 RGCEPN-VHTYTVLIDCLC-KENKVDEASELLNRMLEK--GL--FPNVVTYNALIDGYCKE-----------GLMEAALQ 399 (730)
Q Consensus 337 ~~~~~~-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~ 399 (730)
....|+ ...+......|. +.+.+++++..-.+++.. +. ......|..+.-+|... ....++++
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 332232 222222222222 234455555544444431 10 11233333333333221 13445566
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 004791 400 ILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479 (730)
Q Consensus 400 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 479 (730)
.+++..+.+ +.|......+.--|+..++++.|.+..++.++-+...+...|..|.-.+...+++.+|+.+.+...+.-
T Consensus 466 ale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~- 543 (799)
T KOG4162|consen 466 ALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF- 543 (799)
T ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-
Confidence 666665543 223333333334455566666666666666665445566666666666666666666666665544320
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------CCCcCHHHHHHHHHHHHhc
Q 004791 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK----------------------------GIKAGEVIYTALIDGYCKE 531 (730)
Q Consensus 480 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~li~~~~~~ 531 (730)
..|......-+..-...++.+++......+... .......++..+......
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 011111111111112233444433333222210 001011122222111110
Q ss_pred CChhHHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 532 GKIDDAHSLLERMLSDDC--LPN------SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 532 g~~~~A~~~~~~~~~~~~--~p~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
+...+..-.. +..... .|+ ...|......+.+.+..++|...+.+..... +-....|...+..+...|.
T Consensus 623 -~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred -hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 0000000000 111111 122 2245566677788899999998888887754 5577788888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED--LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
.++|.+.|......++. ++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.++|.+-|
T Consensus 700 ~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999886433 56688999999999998888888 999999965 347999999999999999999999999
Q ss_pred HHHHH
Q 004791 682 KRMFD 686 (730)
Q Consensus 682 ~~m~~ 686 (730)
....+
T Consensus 778 ~aa~q 782 (799)
T KOG4162|consen 778 QAALQ 782 (799)
T ss_pred HHHHh
Confidence 98875
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=1e-08 Score=106.09 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK 600 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 600 (730)
|......+.+.+..++|...+.+..... +-....|......+...|..++|.+.|......+ +.+......+..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3444444455555555554444444332 2333444444444445555555555555554433 2334444555555555
Q ss_pred cCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 601 EGDFDHAHR--LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 601 ~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|+-.-|.. ++..+.+.++. +...|..+...+.+.|+.++|.+.|+...+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 554444444 55555554422 455555555555555555555555555443
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.9e-08 Score=99.61 Aligned_cols=445 Identities=16% Similarity=0.169 Sum_probs=249.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH--HHHHHH--h
Q 004791 175 LMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS--LILGYC--R 250 (730)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 250 (730)
++.+...+++++|...-.+++..+ +-|...+..-+.++.+.++|++|+.+.+.-.. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 344567789999999999998865 44666778888889999999999955543321 112222 244555 7
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCCHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLC-RVGRKSEALE 329 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~ 329 (730)
.+..|+|+..++.... .|..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+.+-+ ..+. +..
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a---~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA---ALQ 160 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH---hhh
Confidence 8999999999984433 34446666677889999999999999999876522 2 222221111 1111 111
Q ss_pred HHHHHHHCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------Ch-hhHHHHHHHHHhCC
Q 004791 330 FFNEMSARGCEPNVHTYT---VLIDCLCKENKVDEASELLNRMLEKG-------LFP------NV-VTYNALIDGYCKEG 392 (730)
Q Consensus 330 ~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~g-------~~~------~~-~~~~~li~~~~~~g 392 (730)
. ..+......| ..+|. .....+...|++.+|+++++.....+ -.- .. .+-..|.-.+...|
T Consensus 161 ~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 161 V-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred H-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 0122222222 22333 34556678899999999999883221 000 00 12233556677889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhc----HHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCChhhH-HHHHH
Q 004791 393 LMEAALQILDLMKSNNCSPNART----YNELICGFCKRKNVH-RAMSLLNELLEQNL----------SPTLITY-NSLIY 456 (730)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~-~A~~~~~~~~~~~~----------~~~~~~~-~~li~ 456 (730)
+.++|..++....+.+ .+|... -|.|+..-....-.+ .++..++....... ....+.. +.++.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 344422 233332211111111 12222221111000 0001111 12222
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 004791 457 GQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLC--KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI 534 (730)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 534 (730)
.|. +..+.+.++...... ..|. ..+..++.... +.....++.+++...-+..+.-...+.-.++......|++
T Consensus 318 l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 222 233333333332221 1222 23333333222 2234667777777776665443455666677777888888
Q ss_pred hHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHH
Q 004791 535 DDAHSLLE--------RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM--GVKPTVY----TYTILIEEVLK 600 (730)
Q Consensus 535 ~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~----~~~~l~~~~~~ 600 (730)
+.|++++. .+.+.+..|. +..++...+.+.++.+.|..++++.+.. .-.+... ++..+...-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 88888888 4544443343 4455666677777777777777766531 0011222 22333334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
.|+.++|..+++++.+.. .+|..+...++.+|++. +.+.|..+-+.+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 788888888888888754 34777788888888776 567777665543
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.7e-08 Score=99.79 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh
Q 004791 206 FNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE 285 (730)
Q Consensus 206 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 285 (730)
.-+=++.+.+.|++++|.+...+++..+ +.|...+..-+-++.+.++|++|+.+.+.-... ..+.+-+.--+-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3445667777888888888888888765 345566666666778888888888665543220 0111111122334456
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCHHHHHH
Q 004791 286 AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL-CKENKVDEASE 364 (730)
Q Consensus 286 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~ 364 (730)
.++.|+|.+.++-... .+..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+.+- ...+.--.+.
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-
Confidence 7888888888772221 23446666677778888888888888888776433 2 22211111 0111111111
Q ss_pred HHHHHHHCCCCCChhhHHHH---HHHHHhCCCHHHHHHHHHHHHhCCC------CCC-hh-------cHHHHHHHHHhcC
Q 004791 365 LLNRMLEKGLFPNVVTYNAL---IDGYCKEGLMEAALQILDLMKSNNC------SPN-AR-------TYNELICGFCKRK 427 (730)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~------~~~-~~-------~~~~li~~~~~~~ 427 (730)
+.+.... .| ..+|..+ ...+...|++.+|+++++.....+. ..+ .. .-..|...+...|
T Consensus 163 ~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 2222211 22 2233333 3445667888888888877732210 001 00 1122334455667
Q ss_pred CHHHHHHHHHHHHHCC
Q 004791 428 NVHRAMSLLNELLEQN 443 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~ 443 (730)
+..+|..++...+...
T Consensus 239 qt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN 254 (652)
T ss_pred chHHHHHHHHHHHHhc
Confidence 7777777777776654
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=5.2e-10 Score=107.90 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=139.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345555666677777777777777777665432 45666677777777777777777777777654 3455666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGV-KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
+...|++++|.+.++++.+... +.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777788888888777775321 223455666777778888888888888887775432 45667777778888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|...+++..+.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888877752 34566666777777788888888887777654
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=5.5e-10 Score=121.00 Aligned_cols=217 Identities=10% Similarity=0.043 Sum_probs=132.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 004791 462 GHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 541 (730)
+++++|...++++.+.+. -+...+..+...+...|++++|...++++.+.++. +...+..+...+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 346777777777776542 25566666666777777777788777777776544 5566777777777788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP 621 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 621 (730)
++.++.+ +.+...+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...++++..... .
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~ 473 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-T 473 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-h
Confidence 8777765 2222233334444556777788888877776543222445566677777778888888888777655321 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+....+.+...|...| +.|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3334455555566666 46666666655421 11221222 23334455666666555 666543
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=5.8e-10 Score=120.85 Aligned_cols=202 Identities=12% Similarity=0.008 Sum_probs=155.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
.+++++|...++++.+.++. +...+..+...+...|++++|...+++.++.+ +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35689999999999998765 77888899999999999999999999999986 55677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
++++.+.. +.+...+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++... .
T Consensus 395 ~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 395 INECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 99999875 23333444455567778999999999999887542225556788888999999999999999998764 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 004791 656 PD-SVTYTLLICAYAHLGLIYSAFDVLKRMFD-AGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 656 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~l~ 704 (730)
|+ ....+.+...|...| ++|...++++.+ ..-.|....+..++..+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 44 455566666777777 588887887763 223444444445554443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=8.2e-10 Score=106.52 Aligned_cols=200 Identities=16% Similarity=0.112 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
....+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45677888999999999999999999998865 4567788889999999999999999999999865 456778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 675 (730)
.+...|++++|.+.++++.+....+ ....+..+..++...|++++|...+++..+.. +.+...+..++..+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998753222 45567788899999999999999999999854 335778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChhhhhhhccchhh
Q 004791 676 SAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDERKQQCDGILF 720 (730)
Q Consensus 676 ~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~e~~~~~~~~l~ 720 (730)
+|..++++..+. ...+...+..+...+...|+.++++.....+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999876 34456667777777778888887776655443
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.9e-10 Score=106.21 Aligned_cols=235 Identities=14% Similarity=0.054 Sum_probs=185.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK 530 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 530 (730)
-+.+...|.+.|.+.+|.+.++...+. .|-+.||..+-..|.+..+++.|+.++.+-.+.- +.++.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 356778888888888888888877765 4556677778888888888888888888888763 3355555666777788
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004791 531 EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRL 610 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 610 (730)
.++.++|.++++..++.. +.++....++...|.-.++++-|+.+|+++++.|+ -+...|+.+.-+|...+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 888899999998888875 56777777788888888899999999999999884 6788888888888888999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 611 LDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 611 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
|++....-..|+ ..+|..+.......|++..|.+-|+-....+ ..+...++.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~- 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV- 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-
Confidence 988887544443 4568888888888899999999998888754 335778888888888889999999998887653
Q ss_pred CCCCH
Q 004791 689 CEPSH 693 (730)
Q Consensus 689 ~~p~~ 693 (730)
.|+.
T Consensus 459 -~P~m 462 (478)
T KOG1129|consen 459 -MPDM 462 (478)
T ss_pred -Cccc
Confidence 4543
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-07 Score=90.64 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=91.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALL 574 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 574 (730)
..++++.|+.+-++.++.+.. +...+-.-...+...|++++|.-.|+...... |-+..+|.-|+..|...|++.+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 344555555555555544332 33333333444555555555555555554432 3344555555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 575 LVEKMTKMGVKPTVYTYTILI-EEVL-KEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 575 ~~~~m~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+-+...+. ++.+..+...++ ..+. .-.--++|.+++++.+.. .|+ ....+.+...+...|+.++++.++++...
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 54444332 123333333332 1111 112234555555555543 332 22334445555556666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 652 EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 652 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..||....+.|+..+...+.+++|++.|...+.
T Consensus 467 --~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 467 --IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred --hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 245566666666666666666666666665554
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2e-10 Score=106.09 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 172 NTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
+.+.++|.+.|.+.+|...|+..++. .|-+.||..|-++|.+..+...|+.++.+-++. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555555666666666655555553 233344555555555555555555555555443 222333333344444444
Q ss_pred CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 252 KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFF 331 (730)
Q Consensus 252 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (730)
++.++|.++++...+.. +.++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 45555555554444421 233334444444444444444444444444444422 3344444444444444444444444
Q ss_pred HHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 332 NEMSARGCEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 332 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
......--.|+ ..+|..+.......|++..|.+.|+-.+..+.. +...+|.|.-.-.+.|++++|..++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 44443222121 233444444444444444444444444433221 33344444444444444444444444433
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.6e-07 Score=97.40 Aligned_cols=504 Identities=13% Similarity=0.091 Sum_probs=283.5
Q ss_pred hhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CCCCHHHHHHHHHH
Q 004791 142 DKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN-M--------VVPNIYTFNTMING 212 (730)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~ll~~ 212 (730)
.|+...++..++.++ +-.+|..+.+.+.+.+++|-|.-.+..|... | -.++ .+-..+...
T Consensus 741 iG~MD~AfksI~~Ik----------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK----------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHh----------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 455555666555443 4568999999999999988887777666432 1 1122 222223333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 004791 213 CCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEA 292 (730)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 292 (730)
....|..++|..+|.+-.+. ..|=..|-..|.+++|.++-+.-.+.. =..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 45678899999999887763 234456777899999999887544322 123666667777778888888
Q ss_pred HHHHHHH----------hhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 293 LDLFRRM----------GEDD---------CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 293 ~~~~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
++.|++. ...+ -..|...|.--...+-..|+.+.|+.+|..... |..++...
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 8888752 2221 012334455555556667888888888876543 56777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh--------
Q 004791 354 CKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCK-------- 425 (730)
Q Consensus 354 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------- 425 (730)
|-+|+.++|-++-++-. |......|.+.|-..|++.+|..+|.+... +...|+.+-.
T Consensus 949 C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 88888888888776532 556666788899999999999998876542 2222222211
Q ss_pred -------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH--------HH--hCCCCCCHHhHHH
Q 004791 426 -------RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHL--------IN--ESGLVPDQFTYSV 488 (730)
Q Consensus 426 -------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~--~~~~~~~~~~~~~ 488 (730)
..+.-.|.+.|++.- ..+..-+..|.+.|.+.+|+++.-+ ++ +.....|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 112223333443321 0122234457777777777765321 11 1233446666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----------cC----------------CCcCH----HHHHHHHHHHHhcCChhHHH
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEK----------KG----------------IKAGE----VIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~~~li~~~~~~g~~~~A~ 538 (730)
-.+.++...++++|..++....+ ++ -.|+. .+...+...|.++|.+..|-
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 77777777777777666543321 11 11222 24455667778888887776
Q ss_pred HHHHHH----------HhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 539 SLLERM----------LSDDCLP----------NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 539 ~~~~~~----------~~~~~~p----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
+-|.+. ++.|-.. +...| +|..-|.+.-++..--++++.+... -.....+..|...|
T Consensus 1166 KKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY 1242 (1416)
T KOG3617|consen 1166 KKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFY 1242 (1416)
T ss_pred HHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHH
Confidence 555432 1111000 00000 1111122222222222222222110 01111222232222
Q ss_pred H---------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHC
Q 004791 599 L---------------KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS-----------IGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 599 ~---------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~m~~~ 652 (730)
. ..|-+++|.+.+.++..++. ....++.|-.-..+ ..+..+.++-...|.++
T Consensus 1243 ~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~llee 1320 (1416)
T KOG3617|consen 1243 KSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEE 1320 (1416)
T ss_pred HHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhC
Confidence 1 13445566666666654431 22233333222111 12555666666667765
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHc
Q 004791 653 GIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA--FLIKHLSN 705 (730)
Q Consensus 653 g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~l~~ 705 (730)
.+.|| ...|..|+..+....++..|.+.+++|..+-...|..+|. ..++..+.
T Consensus 1321 p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~v~~s~vdkv~~ 1379 (1416)
T KOG3617|consen 1321 PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTFVETSTVDKVCD 1379 (1416)
T ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhccccHHHHHHHHH
Confidence 44443 4678899999999999999999999998775455554443 44444443
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.3e-07 Score=88.02 Aligned_cols=288 Identities=16% Similarity=0.110 Sum_probs=187.0
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHhcCCHHHHH
Q 004791 356 ENKVDEASELLNRMLEK-GLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPN-ARTYNELICGFCKRKNVHRAM 433 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~ 433 (730)
.++...|...+-.+... -++-|+.....+.+.+...|+.++|...|++....+ |+ ..........+...|+.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444443333322 234466677777777777888888877777766542 22 222233334445667777776
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 434 SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKG 513 (730)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 513 (730)
.+...+.... .-....|..-+.......+++.|+.+-++.++.... +...+-.-...+...|+.++|.-.|+......
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 6666665431 112333444444455566777777777776664321 33344444456677888888888888877664
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 004791 514 IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI-DGLY-RERKVQEALLLVEKMTKMGVKPT-VYT 590 (730)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~~~-~~~ 590 (730)
+. +..+|..|+..|...|++.+|.-+-+...+. ++.+..++..+. ..+. ....-++|.+++++.++.. |+ ...
T Consensus 365 p~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~A 440 (564)
T KOG1174|consen 365 PY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPA 440 (564)
T ss_pred hh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHH
Confidence 32 6778888888888888888888777765553 234555555442 2232 2334578888888887653 44 455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
.+.+...+...|..++++.++++.+.. .||....+.|.+.+.....+++|.+.|......+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 667778888899999999999888874 5788888899999998999999999998888743
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=1.9e-08 Score=105.14 Aligned_cols=306 Identities=19% Similarity=0.198 Sum_probs=144.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKE---- 356 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 356 (730)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..++++++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3445666666666666553332 2223334445566666666666666666666666543 444444444444222
Q ss_pred -CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH-HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 004791 357 -NKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME-AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMS 434 (730)
Q Consensus 357 -g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 434 (730)
...+...++|+++.+.- |.......+.-.+.....+. .+..++..+...|++ .+++.|-..|....+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 13445555555554432 22222211211111111221 233334444444422 233344333433333333333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 435 LLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ--FTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512 (730)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 512 (730)
++.......- ..+.+.... ....-.|.. .++..+...|...|++++|++++++.+++
T Consensus 165 l~~~~~~~l~---------------~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 165 LVEEYVNSLE---------------SNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHhhc---------------ccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3333221100 000000000 000012222 23344455566666677777777666666
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 004791 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVY--- 589 (730)
Q Consensus 513 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--- 589 (730)
.+. .+..|..-...|-+.|++.+|.+.++.....+ .-|...-+-.+..+.+.|+.++|.+++....+.+..|-..
T Consensus 224 tPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 TPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 433 35566666666666777777777666666655 3455555555666666677777776666666544322111
Q ss_pred ---HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 590 ---TY--TILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 590 ---~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
.| .-.+.+|.+.|++..|++.|..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2235566667777666666555543
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=4.3e-09 Score=108.39 Aligned_cols=237 Identities=23% Similarity=0.223 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC-CCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINES-----GL-VPDQF-TYSVFIDTLCKRGRVEEAQVLFDSLEKK-----GIK- 515 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~- 515 (730)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666677777776666655442 11 12222 2233566777888888888888877643 211
Q ss_pred -cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 004791 516 -AGEVIYTALIDGYCKEGKIDDAHSLLERMLSD-----D-CLPNSY-TYNALIDGLYRERKVQEALLLVEKMTKM---GV 584 (730)
Q Consensus 516 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~ 584 (730)
--..+++.|..+|++.|++++|...+++..+. + ..|.+. .++.+...+...+++++|..++....+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 12346677777888889988888877776542 1 123332 3566677778889999999998876641 11
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 004791 585 KPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GL--KP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-- 651 (730)
Q Consensus 585 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-- 651 (730)
.++ ..+++.|...|...|++++|.++++++++. +. .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999998863 11 11 245678888899999999999999888653
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 652 --EGI-VPD-SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 652 --~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
-|. .|+ ..+|..|+..|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 231 122 5678899999999999999999988775
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.26 E-value=3.1e-07 Score=97.70 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSL 509 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 509 (730)
..|+..+.+.++.. ..+..+|+.|.-. ...|++.-+...|-+-.... +....+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 35666677666542 3366777777655 55567777766665544432 335667777777778888999999999888
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH--h--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 004791 510 EKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML--S--DDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK---- 581 (730)
Q Consensus 510 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---- 581 (730)
....+. +...|-.........|+.-++..+|..-- . .|--++..-|-........+|+.++-+...+++..
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 877544 56666655555566788888888877622 1 22234433333333334456665554443333221
Q ss_pred -----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 582 -----MGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-GLKPDVYTYT----AFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 582 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+.+.+...|...+...-+.+.+..|.+...+++.. ..+-|...|+ .+.+.++..|.++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 233556777888888888888888887777766531 0112333444 344455666777755544433221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 652 EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 652 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..|......-+.. .-.|+++++.+.|++...
T Consensus 1036 ---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 1036 ---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred ---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh
Confidence 1122222222222 335788888888888864
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=1.9e-08 Score=105.08 Aligned_cols=293 Identities=19% Similarity=0.191 Sum_probs=155.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhc--
Q 004791 349 LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKR-- 426 (730)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 426 (730)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345556677777777777664443 22234445556666777777777777777777664 33333334444443111
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChh-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 427 ---KNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLD-SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 427 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
...+....+++++...- |.......+.-.+.....+. .+..++..+..+|++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---------------------- 143 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---------------------- 143 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc----------------------
Confidence 23455555555554432 22222211111111111121 222333344444432
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------------CCCCCHH--HHHHHHHHHHhc
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD--------------DCLPNSY--TYNALIDGLYRE 566 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~p~~~--~~~~li~~~~~~ 566 (730)
.++..+-..|....+.+-...++...... .-+|... ++..+...|-..
T Consensus 144 ----------------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 144 ----------------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred ----------------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 13333333333333322233333322211 1123332 334555666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
|++++|+++.++.+++. +..+..|..-...+-+.|++++|.+.++.+.+.+.. |...-+-.+..+.+.|++++|.+++
T Consensus 208 g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777777764 333666777777777777777777777777776544 6666666666677777777777777
Q ss_pred HHHHHCCCCCC--H----HHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 647 VKMNREGIVPD--S----VTY--TLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 647 ~~m~~~g~~~~--~----~~~--~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
....+.+..|- . -.| .-.+.+|.+.|++..|++.|..+.
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77766554331 1 122 234566777777777777665554
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=3.1e-09 Score=109.36 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=126.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhC-----CC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-cC-HH
Q 004791 454 LIYGQCREGHLDSAYKVLHLINES-----GL--VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK-----GIK-AG-EV 519 (730)
Q Consensus 454 li~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~ 519 (730)
+...|...+++++|..+|+++... |. +.-..+++.|...|.+.|++++|...++.+.+. +.. +. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 445555555666665555554431 11 111234555555666666666666666554431 111 11 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSD---DCLPN----SYTYNALIDGLYRERKVQEALLLVEKMTKM-----G--VK 585 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~ 585 (730)
.++.+...++..+++++|..++++..+. -..++ ..+++.|...|.+.|++++|.+++++++.. | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3455666777788888888887765542 11122 347888888999999999999999888742 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
-....++.+...|.+.+.+++|.++|.+... .|+. | ...+|..|+..|...|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2245677888888889998888888877654 2222 2 35578999999999999999999988876
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=8.3e-06 Score=87.05 Aligned_cols=487 Identities=11% Similarity=0.117 Sum_probs=238.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFN----TMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
+-.+...|.++|.+..|++.|.+..+. ...++.-+ --+..|...-.++++.+.+..|...++..+..+.-.+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 667788889999999999888776542 11111100 112344455678889999999988887777777666666
Q ss_pred HHHhcCChhHHHHHHHhchhC-----------CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH------------hhCC
Q 004791 247 GYCRNKDVEKGFRVFMMMPKK-----------GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM------------GEDD 303 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~ 303 (730)
-|+..=-.+.-+++|+..... ++..|+...-..|.+.|+.|++.+..++.++- ++..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 676665666677777766541 24567777778899999999998888876541 1111
Q ss_pred ---CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------HHCCCCCC-----------hhhHHHHHH
Q 004791 304 ---CRP-----TVRTYTVVIFGLCRVGRKSEALEFFNEM-------------SARGCEPN-----------VHTYTVLID 351 (730)
Q Consensus 304 ---~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------~~~~~~~~-----------~~~~~~li~ 351 (730)
--| |..-+..=+-.|.-.++..+-+++|-+- +...+..+ ......|..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 001 1111111111222222333333333221 11111100 001112223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH----HHHHHH-----HhCCCCC-----------
Q 004791 352 CLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL----QILDLM-----KSNNCSP----------- 411 (730)
Q Consensus 352 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m-----~~~~~~~----------- 411 (730)
-.-+.+++..-...++..+..|.. |..++|+|.+.|...++-.+-. .+|+.. -++. .|
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKR-DP~lA~vaYerGq 924 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKR-DPHLACVAYERGQ 924 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhccc-CCceEEEeecccC
Confidence 333455555556667777777876 8889999999998776544321 111111 1110 01
Q ss_pred -Ch---------hcHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCC--CCChhhHHHHHHHHHhCCChhHHH
Q 004791 412 -NA---------RTYNELICGFCKRKNVHRAM-----------SLLNELLEQNL--SPTLITYNSLIYGQCREGHLDSAY 468 (730)
Q Consensus 412 -~~---------~~~~~li~~~~~~~~~~~A~-----------~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~ 468 (730)
|. ..|....+-+.+..+.+-=. .+.++....++ ..|+.....-+.++...+-..+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 00 01111222222222221111 12222222221 123344444556666666666666
Q ss_pred HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004791 469 KVLHLINESG--LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 469 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 546 (730)
++++.+.-.. +..+...-+.++-...+ .+..+..++.+++-.-+.+ .+.......+-+++|..+|++.-.
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~-------~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP-------DIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch-------hHHHHHhhhhHHHHHHHHHHHhcc
Confidence 6666654321 11111112222211111 1222223333332221100 011122223334444444443211
Q ss_pred CC---------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 547 DD---------------------CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 547 ~~---------------------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
.. -...+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.++
T Consensus 1077 n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHH
Confidence 00 012334566666666666666666554422 234556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
+-.+++..+.+..-.|.. =..|+-+|++.++..+-.+++ ..||......+++-|...|.++.|.-+|...
T Consensus 1151 dLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 666666655554433333 235566666666655543332 1356666666666666666666665555443
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.2e-06 Score=87.97 Aligned_cols=521 Identities=16% Similarity=0.169 Sum_probs=294.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcC--------CccccccCHHhHH-
Q 004791 102 KPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESG--------SEFSLKLSVKGYN- 172 (730)
Q Consensus 102 ~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~- 172 (730)
--+|..|+.+..-.|++.++.|.+.+.+++.+.- .| -+...+-.++.+.+-.. .++++.++.+.|-
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicres--n~---YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLy 791 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRES--NC---YDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 791 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhcc--cc---CCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHH
Confidence 3357778888888999999999999988775431 11 12233333444333211 1234444444332
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004791 173 -----TLLMQLSKFHLVDEMKRVYLEMLDNMVVPN-----------IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSP 236 (730)
Q Consensus 173 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 236 (730)
..|..|++.=.+...-.+...+++..+.-+ .+.-.-++.-.-+.++..--..+++..++.|..
T Consensus 792 rnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~- 870 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ- 870 (1666)
T ss_pred HhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-
Confidence 233444443333333333333333221111 111222344444566677777788888888864
Q ss_pred CHHhHHHHHHHHHhcCChhHH-HH---HHH-----hc-hh-----------CCCC--------cChhhHHHHHHHHHhcC
Q 004791 237 DTFTYTSLILGYCRNKDVEKG-FR---VFM-----MM-PK-----------KGCR--------RNEVSYTNLIHGLCEAK 287 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A-~~---~~~-----~m-~~-----------~~~~--------~~~~~~~~li~~~~~~g 287 (730)
|+.++|+|...|...++-.+- ++ .++ +- .+ +|.. .....|....+-+.+..
T Consensus 871 d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~ 950 (1666)
T KOG0985|consen 871 DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERS 950 (1666)
T ss_pred chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhcc
Confidence 888899988888765443221 10 000 00 00 0100 00011222333333333
Q ss_pred CHHHHH-----------HHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHH
Q 004791 288 RVDEAL-----------DLFRRMGEDDCR--PTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG--CEPNVHTYTVLIDC 352 (730)
Q Consensus 288 ~~~~A~-----------~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~ 352 (730)
+.+-=. ++.++....+++ .|...-...+.++...+-..+-+++++++.-.+ +.-+...-+.|+-.
T Consensus 951 D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt 1030 (1666)
T KOG0985|consen 951 DPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT 1030 (1666)
T ss_pred ChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH
Confidence 332211 222333322211 133334444556666666666666666655321 11122223333333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHH
Q 004791 353 LCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRA 432 (730)
Q Consensus 353 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 432 (730)
..+..+ ....+..+++-.- ---.+......++-+++|..+|++.. .+....+.|+.- -+.+++|
T Consensus 1031 Aikad~-trVm~YI~rLdny-------Da~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA 1094 (1666)
T KOG0985|consen 1031 AIKADR-TRVMEYINRLDNY-------DAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRA 1094 (1666)
T ss_pred HhhcCh-HHHHHHHHHhccC-------CchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHH
Confidence 333322 3333333333221 11123445556677777877777543 244444555443 3566667
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512 (730)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 512 (730)
.+.-++.. .+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++....++
T Consensus 1095 ~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1095 YEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66655442 4567889999999999999988877443 26678889999999999999999888887776
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 513 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
.-.|. +=+.|+-+|++.+++.+-.+++ . -||......+.+-|...+.++.|.-+|... ..|.
T Consensus 1163 ~~E~~--id~eLi~AyAkt~rl~elE~fi-----~--gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a 1224 (1666)
T KOG0985|consen 1163 VREPY--IDSELIFAYAKTNRLTELEEFI-----A--GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFA 1224 (1666)
T ss_pred hcCcc--chHHHHHHHHHhchHHHHHHHh-----c--CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHH
Confidence 55443 4467888999999888766554 2 378888888888888889998888887543 3466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
.|...+...|+++.|...-+++- +..+|--...+|...+.+.-| +|-..++.....-..-|+.-|-..|
T Consensus 1225 ~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcC
Confidence 77778888888888877666542 456777777777665554433 2333333344555666777777777
Q ss_pred CHHHHHHHHHHHH
Q 004791 673 LIYSAFDVLKRMF 685 (730)
Q Consensus 673 ~~~~A~~~~~~m~ 685 (730)
.++|-+.+++..+
T Consensus 1294 yFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1294 YFEELISLLEAGL 1306 (1666)
T ss_pred cHHHHHHHHHhhh
Confidence 7777777666543
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.7e-08 Score=95.10 Aligned_cols=415 Identities=17% Similarity=0.135 Sum_probs=248.4
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCC
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGR 323 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 323 (730)
..+.+..|+++.|+..|-+.+... ++|-+.|..-..+|.+.|++++|++=-.+-++. .|+ ...|.-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 355677889999999888877654 347788888888889999998888776666654 355 3577788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----HHHHhCCCHHHHH
Q 004791 324 KSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALI-----DGYCKEGLMEAAL 398 (730)
Q Consensus 324 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~ 398 (730)
+++|+.-|.+-++.... |...++.+..++ ..+.+. +.. ..++..|..+. +.+.....+..-+
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 99999888888776443 566667666666 111111 110 11222222221 1111111111111
Q ss_pred HHHHHHHhCCCCCChhcH---HHHHHHHHhcCCHHHH-HHHHHHHH-HCCCCC----------------------ChhhH
Q 004791 399 QILDLMKSNNCSPNARTY---NELICGFCKRKNVHRA-MSLLNELL-EQNLSP----------------------TLITY 451 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~A-~~~~~~~~-~~~~~~----------------------~~~~~ 451 (730)
+.+ ... +-+...| ..++.+.......+.- ...-..+. ..+..| -..-.
T Consensus 153 ~~~---~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 153 EII---QKN--PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHh---hcC--cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 111 110 0000000 0111111100000000 00000000 000000 11224
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH-------HHH
Q 004791 452 NSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIY-------TAL 524 (730)
Q Consensus 452 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l 524 (730)
..+++...+..+++.|.+.+....+.. -+..-++....+|...|.+.++........+.|.. ...-| ..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 457777778888889999888887764 35555667777888888888887777776666532 12222 224
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV-YTYTILIEEVLKEGD 603 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~ 603 (730)
..+|.+.++++.|+..|.+.+.....|+.. .+....+++.+..+...-.+ |.. .-...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 456777788889999998877654333321 23344455555554444332 322 222233667788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
+..|+..|.+++...+. |...|....-+|.+.|.+..|++-.+...+.+ ++....|..-+.++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987643 78889999999999999999999888888853 23466677777777888889999999998
Q ss_pred HHHcCCCCCHHHHHH
Q 004791 684 MFDAGCEPSHHTYAF 698 (730)
Q Consensus 684 m~~~g~~p~~~~~~~ 698 (730)
.++. .|+..-+..
T Consensus 452 ale~--dp~~~e~~~ 464 (539)
T KOG0548|consen 452 ALEL--DPSNAEAID 464 (539)
T ss_pred HHhc--CchhHHHHH
Confidence 8875 465544443
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.2e-11 Score=82.95 Aligned_cols=49 Identities=41% Similarity=0.822 Sum_probs=22.1
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLC 319 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 319 (730)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.19 E-value=4.2e-07 Score=96.73 Aligned_cols=515 Identities=11% Similarity=0.006 Sum_probs=294.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004791 182 HLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVF 261 (730)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (730)
.+...|+..|-+.++..+. =...|..|...|+..-+...|.+.|.++-+.+. -|...+....+.|.+..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3477788888777775321 234788889999888888999999999987642 36777888899999999999998884
Q ss_pred HhchhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 262 MMMPKKGC-RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 262 ~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
-..-+... ..-...|--..-.|.+.++..+|..-|+.....+ +-|...|..++.+|...|++..|+++|.+.....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 33222110 0111233344556778889999999999988776 557889999999999999999999999888776433
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh-------C
Q 004791 341 PNVHTYTVLIDCLCKENKVDEASELLNRMLEK------GLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS-------N 407 (730)
Q Consensus 341 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~ 407 (730)
+...-.-..-..+..|++.+|...++.++.. +..--..++..+...+.-.|-..+|..++++-++ .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2222233344567789999999998887653 1111223333334444444555555555554432 1
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCh---h---HHHHHHHHHHhCCCCC
Q 004791 408 NCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHL---D---SAYKVLHLINESGLVP 481 (730)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~a~~~~~~~~~~~~~~ 481 (730)
....+...|..+.++ ..+|-... .+ .|+......+..-....+.. | -+.+.+-.-.. ...
T Consensus 708 ~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAI 773 (1238)
T ss_pred hhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhh
Confidence 111222333322222 22222221 00 11111111111111112211 1 01111111111 111
Q ss_pred CHHhHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004791 482 DQFTYSVFIDTLCK----R----GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS 553 (730)
Q Consensus 482 ~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 553 (730)
+..+|..++..|.+ . .+...|...+...++..-. +...|+.|.-. ...|++.-|...|-+-.... +.+.
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 23334434333322 1 2334667777776665333 66677777655 55567777766666655543 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGLKPDVYTYTAF 629 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~l 629 (730)
.+|..+...+.+..+++-|...|...+... +.|...|..........|+.-++..+|..--+ .|-.++...|..-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 777777777788888888888888777654 44556665555555567777777777766222 2223444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNR---------EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF---DAGCEPSHHTYA 697 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~---------~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~ 697 (730)
.......|+.++-+...+++.. .+.+.+...|.+.+...-+.+.+++|.+...+.. +. +-|...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~--k~d~sqyn 1007 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLEL--KLDESQYN 1007 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhh
Confidence 4444556666555444433321 1333356777777777777787888777776654 22 33344455
Q ss_pred HHH----HHHHcCChhhhhhhccchhh
Q 004791 698 FLI----KHLSNKKVDERKQQCDGILF 720 (730)
Q Consensus 698 ~l~----~~l~~~~~~e~~~~~~~~l~ 720 (730)
.+. +.++..|..|.+++....++
T Consensus 1008 vak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 1008 VAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred hhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 332 22344566666665555444
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=3.8e-08 Score=87.30 Aligned_cols=207 Identities=17% Similarity=0.066 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 486 YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
...+.-.|...|+...|..-+++.++.++. +..+|..+...|-+.|..+.|.+.|++.++.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344555677788888888888888877654 66677777788888888888888888887765 5566777778888888
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
.|++++|...|++....- ..--..+|..++-+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 888888888888777531 1123456777777778888888888888888876543 44466677777788888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 645 LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 645 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
+++.....+ .++.......|..-...|+.+.+.++=..+... -|...-|-.
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 888887765 477777777777777788887777766665542 455544443
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.3e-08 Score=97.93 Aligned_cols=234 Identities=15% Similarity=0.031 Sum_probs=145.1
Q ss_pred CChhHHHHHHHHHHhCCC-CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 462 GHLDSAYKVLHLINESGL-VPD--QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
+..+.++.-+.+++.... .|+ ...|..+...+...|+.++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 344555555655554321 111 344556666777778888888888887777554 6677888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004791 539 SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 618 (730)
..|++.++.. +.+..+|..+...+...|++++|.+.+++..+.. |+..........+...++.++|.+.|++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888887765 4456677777777778888888888888887754 332211222223345677888888886655432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 619 LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE---G--IVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 619 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
.|+...+ .......|+..++ +.++.+.+. . +.| ....|..++..+.+.|++++|+..|++..+.+ .||
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2232221 2223335555444 344444421 1 111 24578888888888899999999998888643 446
Q ss_pred HHHHHHHHHHHHc
Q 004791 693 HHTYAFLIKHLSN 705 (730)
Q Consensus 693 ~~~~~~l~~~l~~ 705 (730)
.+-++..+--+.+
T Consensus 270 ~~e~~~~~~e~~~ 282 (296)
T PRK11189 270 FVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 6666654444433
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=1.5e-06 Score=89.22 Aligned_cols=224 Identities=20% Similarity=0.222 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV 499 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 499 (730)
+.+......+.+|+.+++.+..+.. ....|-.+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455666666666666655421 22334555566666666666666664321 233455666666777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 500 EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
+.|.++-++.. |+......|-+-..-+-+.|++.+|.+++-.+- .|+ ..|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 66666655443 333344455555555566666666666653332 233 2345666666666666665543
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 580 TKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
.- ..-..|...+..-+...|++..|.+-|-+.- -|.+-+++|...+.|++|.++.+. .| -.|..
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---eg-g~n~~ 940 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EG-GANAE 940 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---cc-cccHH
Confidence 21 1112344445556666677777766654432 244555666666667766655432 22 23333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
-....+++-.--| +.|.+++.+
T Consensus 941 k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHHHHhhCc--HHHHHHHHh
Confidence 3334444444334 455555554
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.2e-10 Score=80.06 Aligned_cols=50 Identities=38% Similarity=0.616 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~ 705 (730)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=6.6e-08 Score=85.85 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=164.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYC 529 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 529 (730)
+...|.-.|.+.|+...|.+-+++.++... .+..++..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 345567788888888888888888888653 35677888888888899999999999988887665 6678888888899
Q ss_pred hcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
..|++++|...|++.+..-. ..-..+|..+.-+..+.|+.+.|.+.|++.++.. +....+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998887521 2234577778777788999999999999988865 445667778888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTL 663 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 663 (730)
.+++.....+. ++.......|..-...|+.+.|.++=.++.+. .|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99998887765 68888888888888889988888887777763 465555443
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.1e-07 Score=90.78 Aligned_cols=418 Identities=14% Similarity=0.081 Sum_probs=256.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcC-hhhHHHHHHHHHhcCC
Q 004791 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRN-EVSYTNLIHGLCEAKR 288 (730)
Q Consensus 210 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 288 (730)
.++.+..|+++.|...|.+.+...+. +.+.|+.-..+|.+.|++++|++=-.+-.+. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 46777899999999999999987654 7788888899999999999998876666553 254 4679999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHH
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK-VDEASELLN 367 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 367 (730)
+++|+.-|.+-.+.. +.+...++.+..++... . .+.+.|. ++..|..+..--...+- .+.+.....
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 999999999988875 44666777777776111 1 1111111 12222221111100000 011111111
Q ss_pred HHHHCCC-----CC-ChhhHHHHHHH-------HHhCC--------CHH----HHHHHHHHHHh-CCCCCChhcHHHHHH
Q 004791 368 RMLEKGL-----FP-NVVTYNALIDG-------YCKEG--------LME----AALQILDLMKS-NNCSPNARTYNELIC 421 (730)
Q Consensus 368 ~~~~~g~-----~~-~~~~~~~li~~-------~~~~g--------~~~----~A~~~~~~m~~-~~~~~~~~~~~~li~ 421 (730)
+.+..+. .. |.....++... ....| ... .......++.+ .....-..-...+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1111110 00 00000000000 00000 000 00000000000 000001122456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhH-------HHHHHHHH
Q 004791 422 GFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTY-------SVFIDTLC 494 (730)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~ 494 (730)
+..+..++..|++.+...++.. .+...++....+|...|.+.+.........+.|.. ...-+ ..+..+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 7788888999999999888864 46666777788888889888888777776666532 11122 22334666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YTYNALIDGLYRERKVQEAL 573 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~ 573 (730)
+.++++.++..|.+.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHH
Confidence 778889999999887765443322 223344455555554443333 322 11222356677899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 574 LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 574 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
+.|.++++.. +.|...|....-+|.+.|.+..|+.-.+..++.++ +....|..-+.++....+++.|.+.|++..+.+
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999876 67889999999999999999999999888888642 245566666777777888999999999998854
Q ss_pred CCCCHHHH
Q 004791 654 IVPDSVTY 661 (730)
Q Consensus 654 ~~~~~~~~ 661 (730)
|+..-+
T Consensus 457 --p~~~e~ 462 (539)
T KOG0548|consen 457 --PSNAEA 462 (539)
T ss_pred --chhHHH
Confidence 654333
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=5.8e-08 Score=96.23 Aligned_cols=119 Identities=14% Similarity=-0.069 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHHCCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 004791 217 GNVGEAELYVSKIVQAGL-SP--DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEAL 293 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 293 (730)
+..+.++.-+.+++.... .| ....|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 444555555555553211 11 12234444444444455555555554444422 223444444444444455555555
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 294 DLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 294 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
+.|++..+.+ +.+..+|..+...+...|++++|++.|+...+.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444444432 122334444444444444444444444444443
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3.7e-06 Score=87.70 Aligned_cols=361 Identities=13% Similarity=0.091 Sum_probs=220.6
Q ss_pred CHHhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CC
Q 004791 167 SVKGYNTLLM--QLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA-G--------LS 235 (730)
Q Consensus 167 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g--------~~ 235 (730)
|..+-..++. .|..-|+.|.|.+..+-+. +...|..+.++|.+..+.+-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3445555553 4677899999988876554 4568999999999999999998777766421 1 01
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 004791 236 PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVI 315 (730)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 315 (730)
++ ..-....-.-...|.+++|..++++-.+ |..|=..|-..|.+++|+++-+.--... -..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 1112223334567899999999988766 3444556677899999999876532211 234677777
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HHCCC---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 316 FGLCRVGRKSEALEFFNEM----------SARGC---------EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP 376 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m----------~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 376 (730)
.-+...++.+.|++.|++. +...+ ..|...|.-....+-..|+++.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777888899998888753 22111 12334444455555567777777777766543
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 377 NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456 (730)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 456 (730)
|-++++..|-.|+.++|-++-++- .|......|.+.|-..|++.+|...|.++.. +..-|+
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 455777777788888887776542 2666777788888888888888888876543 222233
Q ss_pred HHHhCC---------------ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH--------HH--H
Q 004791 457 GQCREG---------------HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDS--------LE--K 511 (730)
Q Consensus 457 ~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~--~ 511 (730)
.|-..+ +.-.|..+|++. |.. ....+..|-+.|.+.+|+++--+ ++ +
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 222211 222223333321 111 11233456777777777665321 12 2
Q ss_pred cCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----------CCC----------------CCC----HHHHHHHHH
Q 004791 512 KGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS----------DDC----------------LPN----SYTYNALID 561 (730)
Q Consensus 512 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~----------------~p~----~~~~~~li~ 561 (730)
.+...|+...+.-.+.++...++++|..++-...+ .++ .|+ ...+..+..
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 23444666777777777777777777766544321 111 122 234566777
Q ss_pred HHHhcCCHHHHHHHHHH
Q 004791 562 GLYRERKVQEALLLVEK 578 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~ 578 (730)
.|.+.|.+..|-+-|.+
T Consensus 1154 ~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHhccchHHHHHHHhh
Confidence 77888888777666554
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=9.5e-07 Score=91.21 Aligned_cols=201 Identities=14% Similarity=0.028 Sum_probs=128.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMV-VPNIY-TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLI 245 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 245 (730)
+..|..+...+...|+.+++...+.+..+... .++.. ........+...|++++|..++++..+..+ .|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 45566666677777888887777777665422 12222 222233445677899999999998887642 23334332 2
Q ss_pred HHHH----hcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 246 LGYC----RNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 246 ~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
..+. ..+..+.+.+.++.... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 24555555555554211 222233445566677788888888888888888775 44566777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 322 GRKSEALEFFNEMSARGCE-PNV--HTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
|++++|...+++....... ++. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888887765322 222 23556777888888888888888887543
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=6.9e-06 Score=84.62 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=100.8
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
+-.....+.+|+.+++.+.... .-...|..+.+-|...|+++.|.++|-+.- .++..|..|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344555666666665554422 122335555566666666666666664421 23445566666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 327 ALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 327 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|.++-++.. |++.....|.+-..-+-+.|++.+|.++|-.+.+ |+ ..|.+|-+.|..+..+++.++---
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 666654432 3344455555555556666666666666543322 22 245556666666666665543221
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 004791 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVL 471 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 471 (730)
..-..|...+..-+-..|++..|...|-+.-+ |.+-+++|...+.+++|.++-
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 11223444555556666666666665544322 444455555555565555544
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=7.9e-07 Score=81.70 Aligned_cols=315 Identities=13% Similarity=0.106 Sum_probs=164.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHH
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTV-VIFGLC 319 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~ 319 (730)
+++.+..+.+..++++|++++..-.+.. +.+......|..+|....++..|-+.|+++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4555555666777777777776655533 235566667777777777777777777776654 244443332 245556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 004791 320 RVGRKSEALEFFNEMSARGCEPNVHTYTVLID--CLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAA 397 (730)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 397 (730)
+.+.+.+|+.+...|... ++...-..-+. .....+++..+..+.++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 667777777776666532 22221111222 2234566666666666655322 444444455555667777777
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhCCChhHHHHHHHH
Q 004791 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYN----SLIYGQCREGHLDSAYKVLHL 473 (730)
Q Consensus 398 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~ 473 (730)
.+-|....+-+--.....|+..+.. .+.++.+.|++...+++++|+...+..-. -.+++ ...|+. ..+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh-- 236 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLH-- 236 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHH--
Confidence 7777766654322234455544433 35566777777777777766542221100 00000 000000 0000
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004791 474 INESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK-GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN 552 (730)
Q Consensus 474 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 552 (730)
..+ -...+|.-...+.+.++++.|.+.+-.|..+ ....|+++...+.-. -..+++.+..+-+.-++..+ |-.
T Consensus 237 --~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 237 --QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred --HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCC
Confidence 000 0112222333455667777777776666432 122344554443221 12344555555555555554 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEK 578 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~ 578 (730)
..||..++-.||+..-++-|-.++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 56777777777777777777766654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.2e-06 Score=80.52 Aligned_cols=195 Identities=9% Similarity=0.067 Sum_probs=142.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH-HHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS-LILGYC 249 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~ 249 (730)
+.+.+..+.+..++.+|++++..-.+.. +.+....+.+..+|....++.+|-..++++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5666777778889999999988777653 226677888889999999999999999999875 344433332 245566
Q ss_pred hcCChhHHHHHHHhchhCCCCcChhhHHH--HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004791 250 RNKDVEKGFRVFMMMPKKGCRRNEVSYTN--LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEA 327 (730)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (730)
+.+.+.+|+++...|... ++...-.. -.......+++..+..++++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999888762 22211111 1223346788889999998887654 566666677777899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 328 LEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLF 375 (730)
Q Consensus 328 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 375 (730)
.+-|+...+.+--.....|+..+ +..+.|+.+.|.+...+++++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 99999988764443556777554 455678999999999999988754
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.03 E-value=2.9e-05 Score=77.80 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP-NSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
.+.....++++.......-..+|..+++.-.+..-++.|..+|.++.+.+..+ ++.+.++++.-++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555544222233466677777777777777888888877765555 6667777776665 466777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 578 KMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
--++.- ..+..--...++.+...++-..|+.+|++.+..++.+| ..+|..++.--..-|+...+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 655432 23444445666777777777788888888777654443 45777777777777887777777776654
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.03 E-value=3.7e-05 Score=77.01 Aligned_cols=424 Identities=13% Similarity=0.152 Sum_probs=244.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 235 SPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
+-|..+|+.||.-+... .++++++.++++.. -++-....|..-|.......+++...++|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45888999999877655 89999999999886 45556778888999999999999999999998765 3467777777
Q ss_pred HHHHHhc-CCHHH----HHHHHHHHH-HCCCCC-ChhhHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCCCh
Q 004791 315 IFGLCRV-GRKSE----ALEFFNEMS-ARGCEP-NVHTYTVLIDCL---------CKENKVDEASELLNRMLEKGLFPNV 378 (730)
Q Consensus 315 i~~~~~~-g~~~~----A~~~~~~m~-~~~~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~g~~~~~ 378 (730)
++--.+. |+... ..+.|+-.. +.|.++ ....|+..+..+ ..+.+++..+++|++++..-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6654432 33222 222333332 334333 233455544432 2334556666777776654222111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChh-------
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLE--QNLSPTLI------- 449 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~------- 449 (730)
..|+-. ....+. .|..|-.-++. -+...+..|.++++++.. .|......
T Consensus 173 kLW~DY-----------------~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDY-----------------EAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHH-----------------HHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 223221 111100 01111111110 011223333333333321 11111111
Q ss_pred --------hHHHHHHHHHhCCCh--------hHHHHHHHHH-HhCCCCCCHHhH-HH----HHHHHHhcCC-------HH
Q 004791 450 --------TYNSLIYGQCREGHL--------DSAYKVLHLI-NESGLVPDQFTY-SV----FIDTLCKRGR-------VE 500 (730)
Q Consensus 450 --------~~~~li~~~~~~g~~--------~~a~~~~~~~-~~~~~~~~~~~~-~~----li~~~~~~g~-------~~ 500 (730)
.|..+|.--...+-- ....-++++. .-.+..|+.... .. .-+.+...|+ .+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 122222211111100 0111112221 112222322111 11 1122333333 45
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 501 EAQVLFDSLEKKGIKAGEVIYTALIDGYCK---EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 501 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
++..+++..+..-...+..+|..+.+---. .+..+.....+++++......-..+|..++..-.+...++.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 666666666554322234444444332111 12355666777776664333334578888888889999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 578 KMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP 656 (730)
Q Consensus 578 ~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 656 (730)
++.+.+..+ ++.++++++..+| .++.+-|.++|+--++.- ..+...-...++-+...++-..|..+|++....++.+
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999877666 7788888888776 588999999999877652 2244445677788888999999999999999886666
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 D--SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
| ...|..++.-=..-|+...++++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5 67899999998999999999999888864
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=1.5e-06 Score=89.82 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=39.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhC
Q 004791 385 IDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL-SPTL--ITYNSLIYGQCRE 461 (730)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~ 461 (730)
...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.++... .++. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444555555555555554442 22333444444445555555555555554443211 0111 1233344445555
Q ss_pred CChhHHHHHHHHH
Q 004791 462 GHLDSAYKVLHLI 474 (730)
Q Consensus 462 g~~~~a~~~~~~~ 474 (730)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=3.8e-06 Score=78.89 Aligned_cols=310 Identities=16% Similarity=0.137 Sum_probs=152.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH---HHHHHhCCCHHHHHHHHHHHHhCCCCCChhcH-H
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNAL---IDGYCKEGLMEAALQILDLMKSNNCSPNARTY-N 417 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~ 417 (730)
++.-...+...+...|++..|+.-|...++- |+..|.++ ...|...|+-..|+.=+....+. +||-..- .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4555566777777788888888888777764 44445444 34677777777777777777765 5653322 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004791 418 ELICGFCKRKNVHRAMSLLNELLEQNLSPTL--ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK 495 (730)
Q Consensus 418 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 495 (730)
.-...+.+.|.+++|..-|+.+++....... ..+..++ ..++- ......+..+..
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~-------~~~e~----------------~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA-------LIQEH----------------WVLVQQLKSASG 167 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH-------hHHHH----------------HHHHHHHHHHhc
Confidence 2344567788888888888887776422111 0111000 00000 001111222333
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
.|+...|+.....+++..+ .|...|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 4444445554444444422 244444444444555555555544444443322 22333333334444444454444444
Q ss_pred HHHHHhCCCCCCHHH----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 004791 576 VEKMTKMGVKPTVYT----YTIL---------IEEVLKEGDFDHAHRLLDQMVSLGLKPDVY---TYTAFIQAYCSIGKL 639 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~ 639 (730)
.++.++.+ ||... |-.+ +......++|.++++-.++.++..+.-... .+..+-.++...|++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 44444432 33211 1000 112233455555555555555543221111 222334445555566
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+|++...+.++ +.|| ..++.--..+|.-...+++|+.-|+...+
T Consensus 324 ~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 324 GEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666555 3343 55555555555555556666666665554
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=1.6e-05 Score=74.86 Aligned_cols=315 Identities=10% Similarity=0.031 Sum_probs=145.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHH
Q 004791 239 FTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRT-YTVVIFG 317 (730)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~ 317 (730)
.-.-.+...+...|++.+|+.-|....+. -+.+-.++-.-...|...|+-..|+.-+.+..+. +||-.. -..-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~-dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG-DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC-CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 33344455555556666666655555541 1111122222234455555555555555555543 344221 1122334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 004791 318 LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAA 397 (730)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 397 (730)
+.+.|.+++|..-|+.+++.....+ ....++.+.-..++-.. ....+..+.-.|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 4555555555555555555422110 00111111111111111 11123334556677777
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 398 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
++....+.+.. +.|...|..-..+|...|++..|+.-++...+.. ..+..++..+-..+...|+.+.++...++.++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 77777666653 4456666666667777777777766666554432 224445555566666677777777666666653
Q ss_pred CCCCCHHhHHHHH-------------HHHHhcCCHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCChhHHHHHH
Q 004791 478 GLVPDQFTYSVFI-------------DTLCKRGRVEEAQVLFDSLEKKGIKAGEV---IYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 478 ~~~~~~~~~~~li-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 541 (730)
.||...+-..- ......+++.++++..+...+..+..... .+..+-.++...|++.+|+...
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 34432221110 11122334444444444444433221111 2222333444445555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
.+.+... +.|+.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 331 ~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5554433 223444444445555455555555555555543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.3e-07 Score=95.04 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=97.2
Q ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 571 EALLLVEKMT-KMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 571 ~A~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
...++|-++. ..+..+|..+...|.-.|--.|++++|...|+.++...+. |..+||.|...++...+.++|+..|.++
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3344444443 3444577788888888888888888888888888876433 7778888888888888888899888888
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcC------CCCCHHHHHHHHHHHHcCChhh
Q 004791 650 NREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMF---DAG------CEPSHHTYAFLIKHLSNKKVDE 710 (730)
Q Consensus 650 ~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~g------~~p~~~~~~~l~~~l~~~~~~e 710 (730)
++ +.|+ +.+...|+-.|...|.++||.+.|-+.+ .++ ..++...|.+|=.+|...+..+
T Consensus 491 Lq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred Hh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 88 5676 4456667778888888888888877664 221 1223346666666666665555
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1e-05 Score=94.92 Aligned_cols=373 Identities=14% Similarity=0.033 Sum_probs=206.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
....+...|++.+|........... .-..........+...|+++.+...++.+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 3444556677666665444432110 00011112223344567777666666554211111122233444555567788
Q ss_pred HHHHHHHHHHHHHCCC------CCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh----hcHHHHHHHHHhc
Q 004791 359 VDEASELLNRMLEKGL------FPN--VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA----RTYNELICGFCKR 426 (730)
Q Consensus 359 ~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~ 426 (730)
+++|...+......-- .+. ......+...+...|++++|...+++........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 8888888877654210 001 111222334456788888888888877653111111 2334555566778
Q ss_pred CCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC--C-CHHhHHHHHHHHH
Q 004791 427 KNVHRAMSLLNELLEQNL---SP--TLITYNSLIYGQCREGHLDSAYKVLHLINES----GLV--P-DQFTYSVFIDTLC 494 (730)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~ 494 (730)
|++++|...+++...... .+ ...++..+...+...|++++|...+++..+. +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 888888888877764211 11 1234455666777888888888887765442 211 1 1223444555666
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHH-----HHHHHHHH
Q 004791 495 KRGRVEEAQVLFDSLEKK----GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPNSYTY-----NALIDGLY 564 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~li~~~~ 564 (730)
..|++++|...+.+.... +.......+..+...+...|++++|.+.+++...... ......+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 778888888888776543 1111233444456677778888888888877654210 0111111 11123344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 004791 565 RERKVQEALLLVEKMTKMGVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKP-DVYTYTAFIQAYCSI 636 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~ 636 (730)
..|+.+.|...+........... ...+..+..++...|++++|...++++... |... ...+...+..++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 57788888888766543221111 111345666777888888888888877653 2222 223556667778888
Q ss_pred CCHHHHHHHHHHHHHCC
Q 004791 637 GKLDEAEDLIVKMNREG 653 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g 653 (730)
|+.++|...+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88888888888887643
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=1.3e-05 Score=94.07 Aligned_cols=372 Identities=11% Similarity=0.018 Sum_probs=226.1
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRK 324 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 324 (730)
...+...|++.+|........... .-..........+...|+++.+...++.+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344556677776666555443210 000111222334556788888777777653221111222333445556678999
Q ss_pred HHHHHHHHHHHHCCC------CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCC
Q 004791 325 SEALEFFNEMSARGC------EPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEG 392 (730)
Q Consensus 325 ~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 392 (730)
++|...+......-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999998887754311 111 112223345566789999999999988763111121 24456667778899
Q ss_pred CHHHHHHHHHHHHhCCC---CC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHh
Q 004791 393 LMEAALQILDLMKSNNC---SP--NARTYNELICGFCKRKNVHRAMSLLNELLEQ----NLS--P-TLITYNSLIYGQCR 460 (730)
Q Consensus 393 ~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~ 460 (730)
++++|...+.+.....- .+ ...++..+...+...|++++|...+++.... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999888764210 11 1234455667788899999999998876652 211 1 12334455667777
Q ss_pred CCChhHHHHHHHHHHhCC--CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHH-----HHHHHHHHh
Q 004791 461 EGHLDSAYKVLHLINESG--LVP--DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG-EVIY-----TALIDGYCK 530 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~ 530 (730)
.|++++|...+.+..... ..+ ....+..+...+...|+.++|...++.......... ...+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999888765421 111 123344456677789999999999888754311101 1111 112244556
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcC
Q 004791 531 EGKIDDAHSLLERMLSDDCLPN---SYTYNALIDGLYRERKVQEALLLVEKMTKM----GVKP-TVYTYTILIEEVLKEG 602 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g 602 (730)
.|+.+.|..++........... ...+..+..++...|++++|...+++.... |... ...+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 8899999998877554221111 112345667778899999999999887752 3222 2345667778888999
Q ss_pred CHHHHHHHHHHHHHCC
Q 004791 603 DFDHAHRLLDQMVSLG 618 (730)
Q Consensus 603 ~~~~A~~~~~~~~~~~ 618 (730)
+.++|.+.+.++.+..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998854
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.3e-07 Score=90.41 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=84.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 004791 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY----RE 566 (730)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~ 566 (730)
.++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .|. +...+..++. -.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 3444556666666665432 144555556666777777777777777766543 232 2222333322 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL-DEAEDL 645 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~ 645 (730)
+.+++|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3567777777776553 3466666677777777777777777777776655433 555566666666666665 556666
Q ss_pred HHHHHH
Q 004791 646 IVKMNR 651 (730)
Q Consensus 646 ~~~m~~ 651 (730)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 666665
No 107
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=1.1e-05 Score=79.95 Aligned_cols=230 Identities=10% Similarity=-0.032 Sum_probs=145.4
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh--hH
Q 004791 460 REGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI--DD 536 (730)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 536 (730)
..+..++|+.+..++++... -+..+|+.-..++...| ++++++..++++.+.+++ +..+|+.-...+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 34566777777777766432 13344554444555556 567778888777776555 555666555555555552 56
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC----HHHHHH
Q 004791 537 AHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE---GD----FDHAHR 609 (730)
Q Consensus 537 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~ 609 (730)
++.+++++++.+ +.|..+|+.....+...|+++++++.++++++.+ +.|...|+.....+.+. |. .+++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777765 5567777777777777788888888888888766 45566666666555443 22 245677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------------
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSI----GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG------------- 672 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------------- 672 (730)
+..+++...+. |...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 77777765433 666777777777663 34566777777776643 335667777777776532
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 673 -----LIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 673 -----~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
..++|.++++.+. .+.|=..-|+
T Consensus 283 ~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred ccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 2366777777773 2455444444
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=9.1e-07 Score=91.48 Aligned_cols=241 Identities=14% Similarity=0.100 Sum_probs=181.2
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 004791 444 LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTA 523 (730)
Q Consensus 444 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 523 (730)
.+|-...-..+...+...|-..+|..++++.. .|...+.+|+..|+..+|..+..+..++ +|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444445567788888899999999888654 4666778889999999999988888774 468888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 524 LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
+++......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +--..+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888888888888888888765432 11122222334788999999998877765 4567888888888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
++.|.+.|...+...+. +...||.+..+|.+.|+..+|...+++..+-+ ..+...|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988875432 56789999999999999999999999998876 44566777777778889999999999998
Q ss_pred HHH--cCCCCCHHHHHHHHHHHHcC
Q 004791 684 MFD--AGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 684 m~~--~g~~p~~~~~~~l~~~l~~~ 706 (730)
+.+ +... |..+...++....+.
T Consensus 613 ll~~~~~~~-d~~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 613 LLDLRKKYK-DDEVLLIIVRTVLEG 636 (777)
T ss_pred HHHhhhhcc-cchhhHHHHHHHHhh
Confidence 863 2222 555555555555443
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=3.2e-07 Score=89.47 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=158.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 004791 424 CKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQ 503 (730)
Q Consensus 424 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 503 (730)
.-.|.+..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666654443 112111112333445566677777765443 2332222 455555544444443334445555
Q ss_pred HHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 504 VLFDSLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 504 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
.-+++....... .+..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 544444333222 23333334445677889999999888643 46777778889999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 583 GVKPTVYTYTILIEEVLK--E--GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~--~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
+ .|.. ...+..++.. . +.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+ +-|.
T Consensus 161 ~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 4 4443 3334444432 3 3699999999998765 45688899999999999999999999999988754 3367
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHH
Q 004791 659 VTYTLLICAYAHLGLI-YSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 694 (730)
.++..++.+....|+. +.+.+++.++... .|++.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 8888888888889988 6677888888764 56543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=5.7e-06 Score=81.79 Aligned_cols=209 Identities=8% Similarity=0.004 Sum_probs=161.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-
Q 004791 492 TLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEG-KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV- 569 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~- 569 (730)
.+...++.++|+.+..++++..+. +..+|+.-..++...| ++++++..++++++.+ +.+..+|+.-...+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 344567889999999999988655 6667777777777777 6799999999999876 56667787666666666653
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HH
Q 004791 570 -QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI---GKL----DE 641 (730)
Q Consensus 570 -~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~ 641 (730)
++++.+++++++.. +.|..+|+.....+...|+++++++.++++++.++. |...|+....++.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 77899999999876 578899999999999999999999999999998765 777888877776654 323 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHL----GLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~ 706 (730)
++++..+++... +-|...|+.+...+... ++..+|.+++.+..+.+ ..+......|++.++..
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 888888888753 34788899998888873 44567989988877643 33456677888888764
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.5e-06 Score=87.63 Aligned_cols=223 Identities=20% Similarity=0.122 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
-+.+.|++.+|.-.|+..++.++. +...|..|......+++-..|+..+.+.++.... |......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345666777777777777766554 6667777777777777777777777777665433 56666666677777777777
Q ss_pred HHHHHHHHHhCCCC--------CChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhCCChhHH
Q 004791 397 ALQILDLMKSNNCS--------PNARTYNELICGFCKRKNVHRAMSLLNELLE-QNLSPTLITYNSLIYGQCREGHLDSA 467 (730)
Q Consensus 397 A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a 467 (730)
|+..++..+....+ ++...-.. ..+..........++|-++.. .+..+|......|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777666543200 00000000 011111223333444444333 33335566666666666666666677
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 468 YKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
+..|+.++... +-|...||.|...++...+.++|+..|.++++..+. =+.++..|.-.|...|.+++|...|-..+
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666666543 225556666666666666666666666666665332 12344445555666666666666665544
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=0.00073 Score=72.32 Aligned_cols=453 Identities=13% Similarity=0.082 Sum_probs=226.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGC--CKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGF 258 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 258 (730)
.+++..|+.......+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..+...+-.+|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 35666777777666664 3443 334444444 3678888888777776655443 6777777777888888888888
Q ss_pred HHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------HHHHH
Q 004791 259 RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGR----------KSEAL 328 (730)
Q Consensus 259 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~ 328 (730)
.++++..... |+......+..+|.+.+.+.+-.+.--++.+. .+-+...+-++++.+.+.-. ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888777643 55666667777777777766544444333332 23344444455555544321 12355
Q ss_pred HHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 329 EFFNEMSARG-CEPNVHTYTVLIDCLCKENKVDEASELLN-RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 329 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
+.++.+.+.+ .--+..-.......+-..|++++|.+++. ...+.-...+...-+.-++.+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5566665543 22122223333445566788888888883 333332333444445566777788888888888888777
Q ss_pred CCCCCChhcHHHHHHHH----------------HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 004791 407 NNCSPNARTYNELICGF----------------CKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKV 470 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~----------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 470 (730)
.| +|. |...++.+ ...+..+...+...+.+......-...+--+..-+..-|+.+++.-.
T Consensus 255 k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 75 222 33322221 11223333333333333321110111111222222345677665544
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--H-H--HHHHHHHHHHhcCC-----hhHHHHH
Q 004791 471 LHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG--E-V--IYTALIDGYCKEGK-----IDDAHSL 540 (730)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~--~~~~li~~~~~~g~-----~~~A~~~ 540 (730)
|-.- .|..| .|..=+..|...=..+.-..++........... . . .+...+..-...|. .+.-..+
T Consensus 331 y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 331 YFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred HHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 4221 12121 111111111111122222222222221110000 0 0 00111111111121 1111222
Q ss_pred HHHHH---hC------CCCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 541 LERML---SD------DCLPNS---------YTYNALIDGLYRERKVQ---EALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 541 ~~~~~---~~------~~~p~~---------~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
+.+.. +. ++-|.. -+-+.|++.+.+.++.. +|+-+++.-.... +-|..+--.++..|+
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHH
Confidence 21111 11 111221 23466777787777654 4555555555543 345566667788888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
-.|-+..|.++|..+--..+.-|..-|. +...+...|++..+...++....
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHH
Confidence 8888888888888776555554443332 22344566777777777766554
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.70 E-value=0.00091 Score=71.61 Aligned_cols=487 Identities=15% Similarity=0.112 Sum_probs=238.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004791 178 LSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKG 257 (730)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 257 (730)
+.|.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+. .|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888777666554433 7778888888888889999999999888875 35566666777778887777553
Q ss_pred HHHHHhchhCCCCcChhhHHHHHHHHHhcCC----------HHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHH
Q 004791 258 FRVFMMMPKKGCRRNEVSYTNLIHGLCEAKR----------VDEALDLFRRMGEDD-CRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 258 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
.+.--++-+ .++.+...+-+++..+.+.-. ..-|.+.++.+.+.+ .-.+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 333222222 333455555555555544211 123555566665543 22222223333445556788899
Q ss_pred HHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------------
Q 004791 327 ALEFFN-EMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK--------------- 390 (730)
Q Consensus 327 A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--------------- 390 (730)
|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++..+|.. | |...++.+.+
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 988883 3333333334444456677778888888888888888887643 2 3333332211
Q ss_pred -CCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 004791 391 -EGLMEAALQILDLMKSNNCSPNARTYNELICG---FCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466 (730)
Q Consensus 391 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 466 (730)
.+..+...+...+..... ....|-+-+.. +..-|+.+++...|-+-.. ..| .|..=+..|...=..+.
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg--~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG--DKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCc---HhHhhHHHhhccCCHHH
Confidence 122222222222222211 11222222222 2345666666544432211 111 11111112222212222
Q ss_pred HHHHHHHHHhCCCCCCHH-------hHHHHHHHHHhcC-----CHHHHHHHHHHHH---HcC------CCcCH-------
Q 004791 467 AYKVLHLINESGLVPDQF-------TYSVFIDTLCKRG-----RVEEAQVLFDSLE---KKG------IKAGE------- 518 (730)
Q Consensus 467 a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g-----~~~~A~~~~~~~~---~~~------~~~~~------- 518 (730)
-..++....... ++.. .+...+......| ..+.-..++.+.. ++| ..|+.
T Consensus 357 ~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 222222222110 0000 0111111111112 1122222222211 111 11121
Q ss_pred --HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 519 --VIYTALIDGYCKEGKID---DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI 593 (730)
Q Consensus 519 --~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 593 (730)
.+-+.|++.+-+.++.. +|+-+++..+... +.|..+--.+|..|+-.|-+..|.++|+.+--..+.-|..-|.
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~- 512 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL- 512 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-
Confidence 23456677777777654 4555666555543 4455566677788888888888888888776555555543332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI---VKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
+..-+...|++..+...++.....--..-..+-..+.-+ .+.|.+....++. ++|......--..+-+..++..+.
T Consensus 513 ~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 513 IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223344556666666666655442101011111122222 3445555444432 222221111112233444555566
Q ss_pred cCCHHHHHHHHHHHH
Q 004791 671 LGLIYSAFDVLKRMF 685 (730)
Q Consensus 671 ~g~~~~A~~~~~~m~ 685 (730)
.++.++-...++.|.
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 666666666655554
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=5.4e-06 Score=75.69 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
..+-..+...|+-+.+..+........ +.|....+.++....+.|++.+|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666665544332 4455556666667777777777777777776654 56777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
|++++|..-|.+..+..+. +...++.+...|.-.|+++.|..++......+ .-|..+-..|.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777765333 45566667667777777777777777776644 235666666666777777777777665
Q ss_pred HHH
Q 004791 682 KRM 684 (730)
Q Consensus 682 ~~m 684 (730)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=3.9e-06 Score=86.97 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=182.4
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhc----CCccccccCHHh
Q 004791 95 FSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNES----GSEFSLKLSVKG 170 (730)
Q Consensus 95 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 170 (730)
++.....+.+..-.......+++.+.+.++.+...+-+.++-. +..+++....-..+ ....+++|--..
T Consensus 328 ~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~-------lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~ 400 (777)
T KOG1128|consen 328 LTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQF-------LVKAIQMKEYSVLNRLSYIYAPHLPPIWQL 400 (777)
T ss_pred HHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHH-------HHHHHhhccHhHHhcccccccCCCCCcchH
Confidence 4555555544334555666777777766655444333332211 00111100000000 111123444445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
--.+...+...|....|..+|++.- .|.-+|.+|+..|+..+|..+..+-++. +||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 5566777888888888888887553 4677788888888888888888877773 5777778777777776
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
..-+++|.++++....+ +-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 66778888887765431 22233333445678888888887776654 44566777777777788888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-..+....+.|.+++|++.+.++..
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8777765333 56778888888888888888888888887765 33555666666667777888888887777654
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.7e-05 Score=87.77 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINES-GLV---PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
....|...|....+.++.++|.+++++++.. ++. --...|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666666666666666666665542 111 112345555555555666666666666666542 1234566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHc
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVK-PTVYTYTILIEEVLKE 601 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~ 601 (730)
.|...|.+.++.++|.++++.|.+.- ......|...+..+.+..+-++|..++.++++.-.+ .......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 66667777777777777777776642 245566666777777766667777777666653211 1233334444555567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~ 678 (730)
|+.+.++.+|+..+...++ -...|+.+++.-.++|..+.++.+|++....++.|- ...|...+..=-..|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 7777777777776665333 445677777777777777777777777777666553 334444444334445544433
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=6.1e-06 Score=75.91 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY-CSIGK--LDEA 642 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 642 (730)
.++.+++...+++.++.. +.|...|..+...|...|++++|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556677777777777655 567777888888888888888888888888776533 666777777754 56666 4788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
.+++++..+.+ +.+..++..++..+...|++++|+..|+++++. ..|+..-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence 88888888754 235677777778888888888888888888764 2444433
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.6e-08 Score=60.09 Aligned_cols=32 Identities=44% Similarity=0.877 Sum_probs=14.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHhc
Q 004791 233 GLSPDTFTYTSLILGYCRNKDVEKGFRVFMMM 264 (730)
Q Consensus 233 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (730)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=6.2e-06 Score=79.33 Aligned_cols=186 Identities=17% Similarity=0.110 Sum_probs=117.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA--GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS---YTY 556 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~ 556 (730)
....+..+...+...|++++|...++++....+.. ....+..+..++.+.|++++|+..++++++.. +.+. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 45566666677777888888888888777654321 12355667777778888888888888877654 1111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004791 557 NALIDGLYRE--------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTA 628 (730)
Q Consensus 557 ~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 628 (730)
..+...+... |++++|.+.++++.+.. +.+...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 4444445443 56777777777777643 122222221111100 000 00 011225
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNREGI-VP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+...+.+.|++++|+..+++..+..- .| ....+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678899999999999999987531 12 3578889999999999999999999988654
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=5.8e-08 Score=59.65 Aligned_cols=32 Identities=53% Similarity=1.035 Sum_probs=20.5
Q ss_pred CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 268 GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM 299 (730)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (730)
|+.||.++|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666665
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=3.2e-05 Score=85.75 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=152.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK-GIKA---GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
....|-..+....+.++.++|+++.++++.. ++.- -..+|.++++....-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4456667777777778888888888877654 1111 12467777777667777777777887776642 2345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP-DVYTYTAFIQAYCSI 636 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 636 (730)
.|...|.+.+.+++|.++++.|.+.- .-....|...+..+.++.+-+.|.+++.++++.=++. -.....-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 77777888888888888888887642 3566777778888888888888888888777642221 122334445555677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCChhhhhh
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH--HTYAFLIKHLSNKKVDERKQ 713 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~l~~~~~~e~~~ 713 (730)
|+.+.+..+|+...... +.-...|+.+++.=.++|+.+.+..+|++....++.|-. +.|..-+..=...|+.+...
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 88888888888777643 335677888888888888888888888888877776644 34444444444445554433
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1.2e-05 Score=73.88 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=86.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 004791 531 EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV-LKEGD--FDHA 607 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 607 (730)
.++.+++...+++.++.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666666677666655 5667777777777777777777777777777755 45666666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
.+++++.++.++. +...+..+...+...|++++|+..|+++.+.. +|+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 7888777776544 66677777777777888888888888877653 3443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.5e-05 Score=72.82 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE 566 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 566 (730)
..+-..+...|+-+....+......... .+......++....+.|++.+|...+++..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 5566677778888888887777655433 366677778888999999999999999998876 88999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
|+.++|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+.. |..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998864 456677888888899999999999999999886533 7777888888899999999999887
Q ss_pred HHHH
Q 004791 647 VKMN 650 (730)
Q Consensus 647 ~~m~ 650 (730)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6654
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=2.4e-05 Score=85.47 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...+..|.....+.|++++|..+++...+.. |.+......++..+.+.+++++|+..+++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 45666666666666677777777776666654 3344555666666666677777777666666654 345555566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
++.+.|++++|.++|+++...+. .+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777776666322 24556666666666667777777776666653
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=5e-05 Score=83.03 Aligned_cols=182 Identities=9% Similarity=0.081 Sum_probs=142.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 479 LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558 (730)
Q Consensus 479 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 558 (730)
...+...+..|.....+.|.+++|..+++.+.+..+. +......+...+.+.+++++|+...++.+... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556888999999999999999999999999998655 67788889999999999999999999999876 556677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|++..+.. .+....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 8888899999999999999999844 4568899999999999999999999999998853 34455555544 33
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHh
Q 004791 639 LDEAEDLIVKMNREGI----VPDSVTYTLLICAYAH 670 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~----~~~~~~~~~l~~~~~~ 670 (730)
...-..+++++.-.+. ..........+.-+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 4444556666654432 2234445555544443
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=7.5e-06 Score=71.15 Aligned_cols=91 Identities=8% Similarity=-0.050 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++...++. +...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3444445555555555555555443 334445555555555555555555555555544321 44445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNR 651 (730)
Q Consensus 639 ~~~A~~~~~~m~~ 651 (730)
+++|+..|++..+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=1.4e-05 Score=76.82 Aligned_cols=188 Identities=11% Similarity=0.042 Sum_probs=125.3
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HhH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVV-PN-IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDT--FTY 241 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~ 241 (730)
.....+..+...+.+.|++++|...|+++++..+. |. ..++..+..++.+.|++++|...++++++..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567777888889999999999999999875321 11 236777888999999999999999999886432222 145
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 004791 242 TSLILGYCRN--------KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTV 313 (730)
Q Consensus 242 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 313 (730)
..+..++.+. |++++|.+.|+.+.... +.+...+..+..... .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 5555555554 67888888888887643 122222222211100 0000 0 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 314 VIFGLCRVGRKSEALEFFNEMSARGCE-P-NVHTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
+...+.+.|++++|+..++........ | ....+..+...+.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788889999999988888876331 2 3567888888899999999999888887664
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=8.9e-05 Score=81.84 Aligned_cols=166 Identities=8% Similarity=0.044 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHH
Q 004791 204 YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPD-TFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHG 282 (730)
Q Consensus 204 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 282 (730)
..+..|+..+...+++++|.++.+...+.. |+ ...|-.+...+.+.++++++.-+ .++..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 355666666666666666666666555432 22 22222222344455554444333 12222
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004791 283 LCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEA 362 (730)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 362 (730)
.....++.-...+...|.+. .-+..++..++.+|-+.|+.++|..+++++++..+. |+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 22222332222233333332 123445566666666666666666666666666543 666666666666666 66666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 363 SELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
++++.+.+.. |...+++.++.+++.++...
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 6666665543 44455566666666666554
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.2e-05 Score=69.91 Aligned_cols=121 Identities=9% Similarity=-0.085 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 504 VLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
.++++..+.+ +..+..+...+...|++++|...|+..+... +.+...|..+..++.+.|++++|...|++..+..
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555542 2234456677778888888888888887765 5577778888888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 584 VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+.+...+..+..++...|++++|++.|++.++..+. +...|.....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 567777888888888888888888888888775422 4444444433
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00019 Score=71.69 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=77.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN-SYTYNALIDGLYRERKVQE 571 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~ 571 (730)
+...|++++|+..++.+++..+. |+..+....+.+.+.|+.++|.+.+++++... |+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 33456666666666665555332 55555555666666666666666666666553 33 4444555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|+.+++...... +.|+..|..|..+|...|+..+|..-.. ..|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 666666555543 4556666666666666665555433322 234445666666666665555
Q ss_pred C
Q 004791 652 E 652 (730)
Q Consensus 652 ~ 652 (730)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=5.1e-05 Score=83.65 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=111.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
+...+..|+..|...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 45667788888888888888888888665532 22233344444466666665555544 22 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
......++.-...++..|...+ -+...+..++.+|-+.|+.++|..+++++++..+ -|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHH
Confidence 2223333433333334444432 2455788899999999999999999999998874 3888899999999988 9999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ 442 (730)
Q Consensus 397 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 442 (730)
|.+++.+.... +...+++.++.+++.++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 99998887654 34445555566655555553
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00011 Score=67.18 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=82.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR---- 565 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 565 (730)
...|+..|++++|++..+... +......=+..+.+..+.+-|...+++|.+.+ +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344566666666666655411 22233333444555666666666666666532 44555555555442
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE-AED 644 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 644 (730)
.+.+.+|.-+|++|.+.- +|+..+.+....++...|++++|..+++.++....+ +..+...++-+-...|+-.+ ..+
T Consensus 186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 234666666666666532 566666666666666666666666666666665433 45555555544444554433 333
Q ss_pred HHHHHHH
Q 004791 645 LIVKMNR 651 (730)
Q Consensus 645 ~~~~m~~ 651 (730)
.+.+++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4445444
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.3e-05 Score=69.33 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=74.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
++++++.. +.+......+...+...|++++|.+.|+++...+.. +...|..+..++...|++++|...+++..+.+ +
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 44444432 223444555666667777777777777777665422 56667777777777777777777777776643 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.+...+..+...+...|++++|...|++.++. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 35666666777777777777777777777663 45554443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00017 Score=72.02 Aligned_cols=154 Identities=23% Similarity=0.236 Sum_probs=123.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVL 599 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~ 599 (730)
+......+...|.+++|+..++.++... |.|+..+....+.+.+.++.++|.+.++++.... |+ ....-.+..+|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHH
Confidence 3333445667899999999999988764 5667777777888999999999999999999864 54 667778899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFD 679 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (730)
+.|+.++|+.+++........ |...|..|..+|...|+..+|.....+ +|.-.|++++|+.
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHH
Confidence 999999999999999887543 888999999999999998888765544 3556799999999
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 004791 680 VLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 680 ~~~~m~~~g~~p~~~~~~ 697 (730)
.+....+. ++++..+|.
T Consensus 447 ~l~~A~~~-~~~~~~~~a 463 (484)
T COG4783 447 FLMRASQQ-VKLGFPDWA 463 (484)
T ss_pred HHHHHHHh-ccCCcHHHH
Confidence 99998765 345555544
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=2.5e-05 Score=67.52 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 540 LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
.+++.+... +.+......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..++++..+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444443 2234455566666777778888888877777654 45667777777777778888888888887776542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVT 660 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 660 (730)
.+...+..+..++...|++++|...+++..+. .|+...
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 25666777777778888888888888877773 354433
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00035 Score=64.03 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 388 YCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCK----RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463 (730)
Q Consensus 388 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 463 (730)
+.+..+.+-|.+.+++|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-++ .+|+..+.+.....+...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444444444444444332 23333333333322 22344444444444332 23344444444444444444
Q ss_pred hhHHHHHHHHHHhC
Q 004791 464 LDSAYKVLHLINES 477 (730)
Q Consensus 464 ~~~a~~~~~~~~~~ 477 (730)
+++|..+++....+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0014 Score=59.70 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 569 (730)
+-+....|+.+.|...++.+.+.-+. +..+-..-...+-..|++++|+++++.+++.+ |.|.+++-.-+...-..|+.
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33444556666666666666555321 22222222223344566677777777766665 45555555555555556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG---KLDEAEDLI 646 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~ 646 (730)
-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-..+- +...+..+...+.-.| +.+-|.+++
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666655553 3456677777777777777777777777776654211 4444455555443333 455666677
Q ss_pred HHHHH
Q 004791 647 VKMNR 651 (730)
Q Consensus 647 ~~m~~ 651 (730)
.+..+
T Consensus 215 ~~alk 219 (289)
T KOG3060|consen 215 ERALK 219 (289)
T ss_pred HHHHH
Confidence 76666
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=0.00012 Score=63.86 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAF 629 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 629 (730)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777788777643 223 23333455677788888888888888887653332 2244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
...+...|++++|+..++..... ......+...+.+|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888664432 234566777888888888888888888764
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.002 Score=58.72 Aligned_cols=188 Identities=16% Similarity=0.192 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004791 427 KNVHRAMSLLNELLEQ---N-LSPTLI-TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEE 501 (730)
Q Consensus 427 ~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 501 (730)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4455555555555432 2 333433 34455556667778888888888776653 2122222222223445688888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
|.++++.+++.++. |.+++-.-+...-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 88888888877643 6677776666777778877888888777765 367888888888888888888888888888886
Q ss_pred CCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 004791 582 MGVKPTVYTYTILIEEVLKE---GDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 582 ~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 618 (730)
.. |-++..+..+.+.+.-. .+++-|++.|.+.++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 53 33455555555554433 35677888888888754
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=6.2e-05 Score=70.33 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=64.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 676 (730)
+.+.++|++|+..|.++++..+. |.+.|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 44566666677777666665433 555666666666777777777666666666 3343 5566666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 677 AFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
|++.|++.++ +.|+..+|..=++...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 7777666665 4666666665544443
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00087 Score=65.34 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=100.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG--LYRERKVQEALLLVEKMTKMGVKPTVYTYTIL--------- 594 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l--------- 594 (730)
.++...|+.++|...--.+++.+ ..+ .+..++.+ +.-.++.+.|...|++.+..+ |+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 34555677777777666666654 222 22222322 334566777777777766654 443322211
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 004791 595 ----IEEVLKEGDFDHAHRLLDQMVSLG---LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLIC 666 (730)
Q Consensus 595 ----~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~ 666 (730)
.+-..+.|++.+|.+.|.+.+..+ .+++...|.....+..+.|+.++|+.-.++..+ +.+. ...|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 233456778888888888777642 234555666666677778888888887777775 2232 233444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCC
Q 004791 667 AYAHLGLIYSAFDVLKRMFDAGCEP-SHHTYAFLIKHLSNKK 707 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~l~~~~ 707 (730)
++...++|++|++-+++..+..-.+ ...++.....+|.+++
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 5666778888888887776532222 2234444444454443
No 142
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.97 E-value=0.024 Score=56.43 Aligned_cols=463 Identities=15% Similarity=0.182 Sum_probs=221.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HH
Q 004791 178 LSKFHLVDEMKRVYLEMLDNMVVPN------IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG--YC 249 (730)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~ 249 (730)
+.+.+++++|..+|.+..+.. ..+ ....+.++++|.. ++.+.....+....+.- | ...|-.+..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 457889999999999988752 222 2334667788764 45666666666665542 2 2233333333 34
Q ss_pred hcCChhHHHHHHHhchhC--CCC------------cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCChhhH
Q 004791 250 RNKDVEKGFRVFMMMPKK--GCR------------RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD----CRPTVRTY 311 (730)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~ 311 (730)
+.+.+++|.+.+...... +.. +|-+.-+..++++...|++.+++.+++++..+= +.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999888765543 211 122333567788888999999999888876543 33678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 312 TVVIFGLCRVGRKSEALEFFNEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK 390 (730)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 390 (730)
+.++-.+.+ ..|-++++.. .-| ..-|.-++-.|.+.=..-++.. | ..+.|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHh
Confidence 876666654 3444443221 111 1123344444443211111100 0 0011122222222221111
Q ss_pred C--CCHHHHHHHHHHHHhCCCCCChh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhCCC
Q 004791 391 E--GLMEAALQILDLMKSNNCSPNAR-TYNELICGFCKRKNVHRAMSLLNELLEQNLS----PTLITYNSLIYGQCREGH 463 (730)
Q Consensus 391 ~--g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~ 463 (730)
. .+..--.++++.....-+.|+-. ....|...+.+ +.+++..+-+.+....+. --..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 01111122222222222233322 22223333322 333333333222221100 012355666666667777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLER 543 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (730)
...|.+.+..+.-. .|+...-..+ --..+.+..+... |...++. ..+=+.+|+.
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kl----------lls~~~lq~Iv~~----DD~~~Tk----------lr~yL~lwe~ 367 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKL----------LLSPKVLQDIVCE----DDESYTK----------LRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhh----------hcCHHHHHHHHhc----chHHHHH----------HHHHHHHHHH
Confidence 77777766655543 2222211111 1112222222221 1111111 1122333443
Q ss_pred HHhCCCCCCHH-HHHHH---HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHH---HcCCHHHHHHHH
Q 004791 544 MLSDDCLPNSY-TYNAL---IDGLYRERK-VQEALLLVEKMTKMGVKPTVYTYTILIE----EVL---KEGDFDHAHRLL 611 (730)
Q Consensus 544 ~~~~~~~p~~~-~~~~l---i~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~----~~~---~~g~~~~A~~~~ 611 (730)
....+ .|.. .-.-| ..-+.+.|. -++|+++++.+.+.. +-|...-|.+.. .|. ....+.+-..+-
T Consensus 368 ~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 368 IQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33332 1111 11111 222344444 566666666666532 233333333221 111 122333344444
Q ss_pred HHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 612 DQMVSLGLKP----DVYTYTAFIQA--YCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 612 ~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+-+.+.|+.| +...-|.|.++ +..+|++.++.-.-.=+.+ +.|++.+|..++-++....++++|..++.++
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L- 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL- 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-
Confidence 4444556655 34445555554 4567888888776665655 6788888888888888888888888887764
Q ss_pred HcCCCCCHHHHHH
Q 004791 686 DAGCEPSHHTYAF 698 (730)
Q Consensus 686 ~~g~~p~~~~~~~ 698 (730)
+|+..++..
T Consensus 522 ----P~n~~~~ds 530 (549)
T PF07079_consen 522 ----PPNERMRDS 530 (549)
T ss_pred ----CCchhhHHH
Confidence 666666654
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=0.00021 Score=72.25 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 314 VIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
++..+...++..+|.+++.+.++..+. +..........+.+.++.+.|..+.+++.+..+. +..+|..|..+|.+.|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCC
Confidence 334444444444444444444433222 3333444444444444444444444444443211 33344444444444444
Q ss_pred HHHHHHHHHHH
Q 004791 394 MEAALQILDLM 404 (730)
Q Consensus 394 ~~~A~~~~~~m 404 (730)
++.|+-.++.+
T Consensus 284 ~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 FENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcC
Confidence 44444444444
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00032 Score=70.96 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE 566 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 566 (730)
..++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555667777777777777664 22 33446666666777777777777777653 44566666666667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMV 615 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 615 (730)
++++.|+++.+++.+.. +.+..+|..|..+|...|+++.|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777754 3455677777777777777777777777654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00051 Score=59.95 Aligned_cols=116 Identities=9% Similarity=0.087 Sum_probs=54.2
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVP--NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPD--TFTYTSLILGYCRNKDVEK 256 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 256 (730)
.++.+.+...++.+.+..... .......+...+...|++++|...|+.+......++ ....-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566555542111 011233344555555666666666666655432221 1123334455555555555
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRR 298 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (730)
|+..++...... .....+....+.|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554433222 2233444445555555555555555543
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=1.8e-05 Score=49.51 Aligned_cols=31 Identities=55% Similarity=0.963 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGEDDCRP 306 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 306 (730)
||+++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444433
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.011 Score=57.90 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=62.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004791 492 TLCKRGRVEEAQVLFDSLEKKG---IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK 568 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 568 (730)
-..+.|.+..|.+.|.+.+..+ ..++...|........+.|+.++|+.--++.++.+ +.-+..|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888887654 33455667777777788889999888888877754 1112233333344556778
Q ss_pred HHHHHHHHHHHHhCC
Q 004791 569 VQEALLLVEKMTKMG 583 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~ 583 (730)
+++|.+-|++..+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888888877643
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3.2e-05 Score=48.29 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777677665
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.034 Score=58.12 Aligned_cols=380 Identities=13% Similarity=0.128 Sum_probs=180.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHhchhC-CCCc--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004791 235 SPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK-GCRR--------NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR 305 (730)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 305 (730)
.|.+..|..+...-.+.-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.++|-+|-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 477778888777776767777777766554331 1100 000111112222 377777777777765543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 306 PTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE--PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNA 383 (730)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 383 (730)
..|..+.+.|++-...++++.--. +.. .-...++.+.+.++....+++|.+.|..-.. . ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 235556666777666665542110 000 0134667777777777777777777655321 1 12
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 384 LIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 463 (730)
.+.++.+..++++-..+-..+ +.+....-.+..++...|.-++|.+.+-+- +.+ ..-+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHH
Confidence 445555555554444333332 345566667777777777777777665432 111 123445566666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLER 543 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (730)
+.+|.++.+...- |...+ ++.- .|-+++++.. ...-|..+.+.|+.-+|-+++.+
T Consensus 894 W~~avelaq~~~l----~qv~t---liak--------~aaqll~~~~----------~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 894 WGEAVELAQRFQL----PQVQT---LIAK--------QAAQLLADAN----------HMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred HHHHHHHHHhccc----hhHHH---HHHH--------HHHHHHhhcc----------hHHHHHHhhhcccchhHHHHHHH
Confidence 7777766554321 11111 1110 0111111100 01123344556666666666666
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 544 MLSD----DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 544 ~~~~----~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
|.+. +.++-..--..++.++. ..+..++++-.+.....|...+... +...|-..++-.+.+..-.
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--- 1017 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--- 1017 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---
Confidence 6543 22221111111111211 1222333333333333332222111 1122223333333332211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-GIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
-.....+-.|..-....|..+.|...--.+.+. .+-|....|..|.-+-+....+-..-+.|-++.
T Consensus 1018 gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1018 GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 012334445555556678888887765555432 355667777777666555555555555554443
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00052 Score=54.64 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
+..++..+...|++++|...++++.+.... +...+..+..++...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777776664322 33556666666777777777777777766643 2344566666777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 671 LGLIYSAFDVLKRMFD 686 (730)
Q Consensus 671 ~g~~~~A~~~~~~m~~ 686 (730)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00068 Score=69.00 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=54.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+...|++++|+.+|+++++.. +.+...|..+..+|.+.|++++|+..++++++.... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666654 345556666666666666666666666666664322 4555666666666666666
Q ss_pred HHHHHHHHHHH
Q 004791 641 EAEDLIVKMNR 651 (730)
Q Consensus 641 ~A~~~~~~m~~ 651 (730)
+|+..|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=4.4e-05 Score=59.34 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGLK-PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFD 679 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (730)
.|++++|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ ..+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46667777777777664331 1344445566777777777777777766 2211 1123444455666777777777777
Q ss_pred HHHH
Q 004791 680 VLKR 683 (730)
Q Consensus 680 ~~~~ 683 (730)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6664
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.78 E-value=0.0009 Score=57.20 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
....+...+...|++++|..+|+-+...++. +..-|..|.-++-..|++++|+..+......+ +.|+..+-.++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344455556677777777777777665433 55566677777777777777777777777644 235666777777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 670 HLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 670 ~~g~~~~A~~~~~~m~~ 686 (730)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.00092 Score=56.10 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTL 663 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ 663 (730)
++..++..+...|++++|.+.|+++.+.... + ....+..++.++.+.|++++|.+.++++.... |+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHH
Confidence 4455666667777777777777777664321 0 13455567777777777777777777777632 22 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 664 LICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
++.++.+.|+.++|.+.++++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777777765
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=6.4e-05 Score=46.53 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEP 691 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 691 (730)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0022 Score=68.25 Aligned_cols=71 Identities=25% Similarity=0.161 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
+...|..+.-.....|++++|...++++.+. .|+...|..++..+...|+.++|.+.+++... +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 4455666655555667777777777777774 36666777777777777777777777777765 35554443
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=5.6e-05 Score=46.79 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004791 275 SYTNLIHGLCEAKRVDEALDLFRRMGEDDC 304 (730)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 304 (730)
+|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 334444444444444444444444443333
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00065 Score=54.07 Aligned_cols=91 Identities=23% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++....... +...+..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 3344444455555555555544432 223344444455555555555555555555543321 23344555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNR 651 (730)
Q Consensus 639 ~~~A~~~~~~m~~ 651 (730)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555543
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.71 E-value=0.00051 Score=66.67 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTK----MGVK-PTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGL-KPDVY 624 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 624 (730)
.|..|...|.-.|+++.|+...+.-++ .|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566666677778888888877664332 2211 1245667788888888999999888876653 221 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNR----E-GIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...+|.+.|.-...++.|+.++++-.. . +..-....+.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667788888888888999888776432 1 1122466788899999999999999888776653
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.0011 Score=67.39 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=54.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
...+...|++++|++.|+++++.+ +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 334455566666666666666554 3445555566666666666666666666666544 33555566666666666666
Q ss_pred HHHHHHHHHHHHC
Q 004791 605 DHAHRLLDQMVSL 617 (730)
Q Consensus 605 ~~A~~~~~~~~~~ 617 (730)
++|+..|+++++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00051 Score=64.39 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=50.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
+.+.+++.+|+..|.+.++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 445566666666666666554 3445555555556666666666666555555543 22345566666666666666666
Q ss_pred HHHHHHHHH
Q 004791 608 HRLLDQMVS 616 (730)
Q Consensus 608 ~~~~~~~~~ 616 (730)
++.|++.++
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 666666655
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.011 Score=51.24 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL---KPDVYTYT 627 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~ 627 (730)
|.+..--.|..+..+.|+..+|...|++...--...|....-.+.++....++...|...++++.+..+ .|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 555556667777777777777877777777644455677777777777777788888777777776431 233 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.+.+.|...|++.+|..-|+..... -|+...-......+.++|+.++|..-+..+.+. +.-+..+|+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT-AKRSRPHYR 231 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcchhHH
Confidence 5667777788888888888887773 466555555555677777777776655555432 233445554
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0018 Score=54.33 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGV--KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFI 630 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 630 (730)
++..++..+.+.|++++|.+.++++.+... +.....+..+..++.+.|++++|.+.|+++....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666666666666666665321 0113345556666677777777777777666542221 134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004791 631 QAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777664
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.67 E-value=0.0031 Score=62.12 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hH
Q 004791 280 IHGLCEA-KRVDEALDLFRRMGED----DCRPT--VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN-----VH-TY 346 (730)
Q Consensus 280 i~~~~~~-g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~-~~ 346 (730)
...|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|.++|+++.......+ +. .+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344455 6666666666665431 1 111 22344555566666666666666666554322111 11 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 347 TVLIDCLCKENKVDEASELLNRMLE 371 (730)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~~~~ 371 (730)
...+-++...|+...|.+.+++...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222334445566666666665554
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0017 Score=55.48 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
-.+...+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|..+...++. |...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 344445556777777777777776654 345556666777777777777777777777776543 666777777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNR 651 (730)
Q Consensus 637 g~~~~A~~~~~~m~~ 651 (730)
|+.+.|.+-|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777665
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.12 Score=54.42 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC--------CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 004791 200 VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA-GLS--------PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCR 270 (730)
Q Consensus 200 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 270 (730)
.|....|..+.....+.-.++-|...|-+.... |++ .+...-.+=+.+| -|++++|.+++-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 455566666666555555555555555443221 110 0000111112222 377888888887776632
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGED-DCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVL 349 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 349 (730)
..|..+.+.|++-...++++.-... +-..-..+|+.+...+.....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2345566677776666665442111 0011234677777777777778888777764321 1235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCH
Q 004791 350 IDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNV 429 (730)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 429 (730)
+.++.+..++++-+.+-..+.+ |....-.+.+++.+.|.-++|.+.|-+-- .| ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 5666666666655554444333 55556667777777777777776654321 11 1334556666667
Q ss_pred HHHHHHHHH
Q 004791 430 HRAMSLLNE 438 (730)
Q Consensus 430 ~~A~~~~~~ 438 (730)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 777666543
No 167
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0012 Score=67.17 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=54.8
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGED--DCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTV 348 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 348 (730)
.+.+....+++.+....+++++..++-+.... ....-..|..++++.|.+.|..++++++++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444555555555555555555444432 1111122334555555555555555555555445555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004791 349 LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDG 387 (730)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 387 (730)
|++.+.+.|++..|.++...|...+...+..|+..-+.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 555555555555555555554444433344444333333
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0016 Score=63.85 Aligned_cols=128 Identities=6% Similarity=0.031 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK-VGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYC 249 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 249 (730)
|-.+++..-+.+..+.|+.+|.++.+.+ ..+...|......-.+ .++.+.|..+|+...+. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444444555555555554322 1112222222222122 23333355555554443 2334444444444444
Q ss_pred hcCChhHHHHHHHhchhCCCCcC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 250 RNKDVEKGFRVFMMMPKKGCRRN---EVSYTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
+.|+.+.|+.+|++.... ++.+ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555444432 1111 12444444444444444444444444433
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.002 Score=63.11 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR-ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1222333333333222 33444455555555543 234445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPD---VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...|+.+.|+.+|++.+.. +.++ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1111 12455555555555555555555555554
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0039 Score=56.26 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
..+..+...+...|++++|...|++.++....+. ...+..+...+.+.|++++|...+++.++.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455555566666666777666666665321111 245556666666666666666666666654322 3445555555
Q ss_pred HHHhcCCHHHHH
Q 004791 632 AYCSIGKLDEAE 643 (730)
Q Consensus 632 ~~~~~g~~~~A~ 643 (730)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666655544444
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0021 Score=57.87 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
...|..++..+...|++++|+..|++.+.....+ ...+|..+..++...|++++|+..+++..+.. +....++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666777777777777776543222 23466677777777777777777777777632 22344555555
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 004791 666 CAYA-------HLGLIYSAFDVLKRM 684 (730)
Q Consensus 666 ~~~~-------~~g~~~~A~~~~~~m 684 (730)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 667777555555443
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00011 Score=44.33 Aligned_cols=26 Identities=42% Similarity=0.862 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0013 Score=66.85 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSAR--GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNAL 384 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 384 (730)
+......+++.+....+.+++..++-+.... ....-..|..++++.|.+.|..+++..++..=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555565555555433 11122344456666666666666666666666666666666666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhc
Q 004791 385 IDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKR 426 (730)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 426 (730)
++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666665555444555555444444443
No 174
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.51 E-value=0.0022 Score=62.49 Aligned_cols=285 Identities=14% Similarity=0.059 Sum_probs=145.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHH--Hh--CC-CCCChhcHHHHHH
Q 004791 351 DCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEGLMEAALQILDLM--KS--NN-CSPNARTYNELIC 421 (730)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~~-~~~~~~~~~~li~ 421 (730)
.-+|+.|+......+|+..++.|.. |. .+|..|..+|.-.+++++|+++...= .. .| -.-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578889999999999998888754 33 34555666677777888887765321 11 11 0112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004791 422 GFCKRKNVHRAMSLLNELL----EQNL-SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR 496 (730)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 496 (730)
.+--.|.+++|+..-.+-+ +.|- ......+..+...|...|+.-... .-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------
Confidence 5555666777665433221 2111 112233444555555444311000 0000011111110
Q ss_pred CCHHHHHHHHHHHHH----cCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhc
Q 004791 497 GRVEEAQVLFDSLEK----KGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLS----DDC-LPNSYTYNALIDGLYRE 566 (730)
Q Consensus 497 g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~li~~~~~~ 566 (730)
..++.|.++|.+-++ .|-. .--..|..|.+.|.-.|+++.|+...+.-+. -|- ......+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012223333322111 1100 0113455666666667777777665554322 110 01223556666677777
Q ss_pred CCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 004791 567 RKVQEALLLVEKMT----KMGV-KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-----GLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 567 ~~~~~A~~~~~~m~----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~ 636 (730)
|+++.|.+.|+... +.|- ........+|...|.-..++++|+.++.+-+.. +..-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77777777776543 2221 123344556677777777777777777655431 1122455677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNR 651 (730)
Q Consensus 637 g~~~~A~~~~~~m~~ 651 (730)
|..+.|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777777665543
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.037 Score=52.84 Aligned_cols=77 Identities=8% Similarity=-0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIY--TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG 247 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 247 (730)
+-.....+.+.|++++|+..|+++...-+.+... ..-.++.++.+.+++++|...+++.++..+......+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3344455566788888888888887753322111 1234566777888888888888888776443333333333333
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.006 Score=55.07 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN--SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
.+..+...+...|++++|...|++.++....+. ...+..+...+.+.|++++|...+++.++.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555566666666666666554321111 2445555555666666666666666665542 2234444555555
Q ss_pred HHHcCCHHHHH
Q 004791 598 VLKEGDFDHAH 608 (730)
Q Consensus 598 ~~~~g~~~~A~ 608 (730)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00024 Score=55.15 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 217 GNVGEAELYVSKIVQAGLS-PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDL 295 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 295 (730)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555544321 1222333345555555555555555544 11110 1122222334445555555555555
Q ss_pred HH
Q 004791 296 FR 297 (730)
Q Consensus 296 ~~ 297 (730)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0066 Score=64.66 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 571 EALLLVEKMTKM-GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 571 ~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
.+.+..++.... ..+.+...|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444443332 123456677777767777888999999999888864 57778888888888899999999999888
Q ss_pred HHCCCCCCHHHH
Q 004791 650 NREGIVPDSVTY 661 (730)
Q Consensus 650 ~~~g~~~~~~~~ 661 (730)
.. +.|...+|
T Consensus 480 ~~--L~P~~pt~ 489 (517)
T PRK10153 480 FN--LRPGENTL 489 (517)
T ss_pred Hh--cCCCCchH
Confidence 87 44654454
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00018 Score=43.26 Aligned_cols=28 Identities=54% Similarity=0.994 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.0037 Score=61.58 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----C
Q 004791 590 TYTILIEEVLKE-GDFDHAHRLLDQMVSL----GLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-----D 657 (730)
Q Consensus 590 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-----~ 657 (730)
.+..+...|... |++++|++.|+++.+. + .+ -..++..++..+.+.|++++|.++|++....-... +
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344455566666 7888888888877752 2 11 13345667777888888888888888887643221 1
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 658 S-VTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 658 ~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
. ..+...+-++...|+...|.+.+++...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2233444566677888888888888764
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.002 Score=50.97 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 278 NLIHGLCEAKRVDEALDLFRRMGEDDC-RPTVRTYTVVIFGLCRVG--------RKSEALEFFNEMSARGCEPNVHTYTV 348 (730)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 348 (730)
..|.-+...|++.....+|+.++..|+ .|++.+|+.++.+.++.. +.-+.+.+|+.|+..+.+|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444455666666666666666665 566666666655555432 22334555555555555555555555
Q ss_pred HHHHHH
Q 004791 349 LIDCLC 354 (730)
Q Consensus 349 li~~~~ 354 (730)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0081 Score=56.95 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI---GKLDEAEDLIVKMNREGIVPDSVTY 661 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~ 661 (730)
+-|...|..|...|...|+++.|..-|.+..+... ++...+..+..++..+ ....++..+|+++...+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 44566666666666666666666666666665422 2444555555544322 13455666666666643 2245555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 662 TLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
..|...+...|++.+|...|+.|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666666666666666666666654
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.40 E-value=0.0043 Score=49.14 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAEDLIVKMNREGI-VPDSVTYTLLICAYAHLG--------LIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
...|.-+...|++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566888888888888888888 788888888877655432 3446677899999888999999999
Q ss_pred HHHHHHHcC
Q 004791 698 FLIKHLSNK 706 (730)
Q Consensus 698 ~l~~~l~~~ 706 (730)
.++..|.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999888764
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.009 Score=56.65 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=102.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG---DFDHAHR 609 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 609 (730)
..+....-++.-+..+ |.|...|..|...|...|+...|..-|.+..+.. +++...+..+..++..+. ...++.+
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3555555566555555 7789999999999999999999999999999865 578888888888776543 4678999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
+|++++..+.. |......|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 99999997644 77788888899999999999999999999964 44444555544
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.00076 Score=49.85 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4556666666666665532 224555555666666666666666666666543 4554444443
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.37 E-value=0.064 Score=46.73 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 231 (730)
|++..--.|..++.+.|+..+|...|++.+.--+.-|......+.++....+++..|...++++-+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 344444444555555555555555555555433333444444444555555555555555554444
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.36 E-value=0.082 Score=50.48 Aligned_cols=59 Identities=5% Similarity=-0.043 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRT---YTVVIFGLCRVGRKSEALEFFNEMSARG 338 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (730)
....+.+.|++++|.+.|+++...... +... .-.++.++.+.+++++|...+++.++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344445556666666666666554211 1111 1234455566666666666666666553
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0064 Score=54.67 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRP--TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLI 350 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 350 (730)
...|..++..+...|++++|...|++.......+ ...+|..+...+...|++++|++.++........ ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3445556666666666666666666665442111 1235666666666677777777776666654222 234444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 004791 351 DCLC-------KENKVDEASELLN 367 (730)
Q Consensus 351 ~~~~-------~~g~~~~A~~~~~ 367 (730)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 4555554443333
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.31 E-value=0.0012 Score=48.18 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...+...|++++|.+.|+++++.. +-+...+..++.++...|++++|..+|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666643 22455566666666666666666666666654
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.015 Score=48.06 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAY 668 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~ 668 (730)
..++-..|+.++|+.+|++.+..|+..+ ...+..+...+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3344455556666666665555554432 2234445555556666666666666555431 22 12222233345
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004791 669 AHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~ 685 (730)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55566666666555443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.02 Score=47.31 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYC 634 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 634 (730)
+..++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.....+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455567888888888888877765443 3455566777788888888888888877642221 1222333445667
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~ 651 (730)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78888888888776654
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.098 Score=48.30 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI-----L 594 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-----l 594 (730)
+.+.++..+.-.|.+.-...++++.++.+.+.++.....|++.-.+.|+.+.|...|+...+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666666777777777888877766566777777777777788888888888886654322233333333 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTY 661 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 661 (730)
...+.-++++..|...+.+....+.. |....|.-.-++.-.|+..+|++.++.|++. .|...+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 34455677888888888888876533 5656666555666678899999999999884 4544333
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.23 E-value=0.0014 Score=47.93 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=38.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+...+...|++++|++.|+++++..+. +...+..+..++...|++++|..+|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777765422 566677777777777777777777777765
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0014 Score=48.61 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG-LIYSAFDVLKRMFD 686 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 686 (730)
...|..++..+...|++++|+..|++.++.+ +.+...|..++.+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555532 113444555555555555 45555555555443
No 195
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.21 Score=53.89 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE--VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGL 318 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 318 (730)
...-++.+++...++-|+.+.+.-.. .++. .......+-+.+.|++++|...|-+-...- .| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 34456667777777777776654322 1221 123334445567888888888877665431 22 1245555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666666777777888888776 66667778888888888877666655543 2211 112344566666677777776
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 399 QILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNEL 439 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 439 (730)
.+-..... +......+ +-..+++++|++.+..+
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 65544332 22222333 33457778887777654
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.2 Score=46.40 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004791 532 GKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLL 611 (730)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (730)
...+..+++|++-.. .+.+.++..+.-.+.+.-...++++.++...+.++.....++..-.+.|+.+.|...|
T Consensus 163 ~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 163 LAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred cchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333555666665432 3456677777778889999999999999776778889999999999999999999999
Q ss_pred HHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 612 DQMVSLGLKPD-----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 612 ~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
++..+..-..| ..+.......|.-+.++.+|...+.+....+ +.|+...|.-.-+..-.|+..+|++.++.|.+
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 97765322222 3333344445667788999999999988754 34666666666666667999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHc
Q 004791 687 AGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 687 ~g~~p~~~~~~~l~~~l~~ 705 (730)
. .|...+-++++-.|+.
T Consensus 315 ~--~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 315 Q--DPRHYLHESVLFNLTT 331 (366)
T ss_pred c--CCccchhhhHHHHHHH
Confidence 4 6777776666655554
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0015 Score=48.23 Aligned_cols=61 Identities=31% Similarity=0.530 Sum_probs=38.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 662 (730)
...|++++|+++|+++.+..+. +...+..++.+|.+.|++++|.++++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 3566777777777777665433 5666667777777777777777777777763 35543333
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.12 E-value=0.35 Score=48.37 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTY-TAFI 630 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 630 (730)
..+|...+....+....+.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+--+.. -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777777778888888888888777 5677778888887665 57778888888766654 2343333 3455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
.-+...++-+.|..+|+..++. +..+ ...|..++.-=..-|+...+..+=++|.+. .|...+-..+.+.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 5666778888888888866543 2223 567777887777888888888887877763 565555555554443
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.11 E-value=0.0024 Score=47.24 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG-KLDEAEDLIVKMNR 651 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 651 (730)
+..+|..++..+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5678999999999999999999999999997543 7778999999999999 79999999999887
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.10 E-value=0.023 Score=54.63 Aligned_cols=99 Identities=14% Similarity=0.011 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI--VPDSVTYTLL 664 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l 664 (730)
..|...+..+.+.|++++|...|+.+++..+... ...+..++.+|...|++++|...|+++.+..- ......+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3344444444556777777777777776532211 24566777777777888888888877776320 1124455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004791 665 ICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+..+...|+.++|.++|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777778888888888877764
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.38 Score=47.86 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
+.+..|.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-..+-.. + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34444555556666666666644432 24666666666777777776655544321 1 14466666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLL 436 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 436 (730)
+.|+..+|..+... ..+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 77776666666554 12244556666666666665543
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.018 Score=51.93 Aligned_cols=103 Identities=23% Similarity=0.377 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 551 PNSYTYNALIDGLYR-----ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625 (730)
Q Consensus 551 p~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 625 (730)
.+-.+|..+++.+.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+ .|.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-H
Confidence 566777777777653 35555566666777777777777777777766543 221 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
+.++..-|- .+-+-|++++++|...|+-||..++..|+..+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 112211121 234668888888888888888888888888876655
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.00 E-value=0.013 Score=52.84 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 325 SEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355 (730)
Q Consensus 325 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 355 (730)
+-|++++++|...|+-||..++..+++.+.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 3455555555555555555555555555533
No 204
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.98 E-value=0.49 Score=47.59 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004791 118 LLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN 197 (730)
Q Consensus 118 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (730)
+|.+.+++.+|+.++..+.+....... .|. ..+..+.++++|... ..+.......+..+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f------~lk-------------eEvl~grilnAffl~-nld~Me~~l~~l~~~ 74 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPF------LLK-------------EEVLGGRILNAFFLN-NLDLMEKQLMELRQQ 74 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchH------HHH-------------HHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 466888999999888887654322111 011 012344566666543 344444444444432
Q ss_pred CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHC--CCC------------CCHHhHHHHHHHHHhcCChhHHHHHH
Q 004791 198 MVVPNIYTFNTMING--CCKVGNVGEAELYVSKIVQA--GLS------------PDTFTYTSLILGYCRNKDVEKGFRVF 261 (730)
Q Consensus 198 ~~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (730)
.| ...|-.+..+ +.+.+.+.+|.+.+..-... +.. +|.+.-+..++.+...|++.+++.++
T Consensus 75 --~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 75 --FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred --cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 22 2233333333 34677888887777665443 211 12223356677888899999999888
Q ss_pred HhchhCC----CCcChhhHHHHHHHHHh
Q 004791 262 MMMPKKG----CRRNEVSYTNLIHGLCE 285 (730)
Q Consensus 262 ~~m~~~~----~~~~~~~~~~li~~~~~ 285 (730)
++|...= ..-+..+|+.++-.+.+
T Consensus 152 n~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 152 NRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 8776533 33678888876666654
No 205
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.97 E-value=0.63 Score=48.73 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=102.9
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
+..+|..-+.-....|+.+.+.-++++..-- +..-...|-..+.-....|+.+-|..++....+...+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456777777777788888887777766532 111223344445555555887777777766665543322222222222
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHH-----H
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSY-TYNALIDGLYRERKVQEAL---LLVEKMTKMGVKPTVYTYTILIE-----E 597 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~---~~~~~m~~~~~~~~~~~~~~l~~-----~ 597 (730)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... | .-+..+...+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence 2334678888888888887753 4432 2222334445667777766 33333222 1 122222222221 2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
+.-.++.+.|..++.++.+. ..++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457788888888888775 3446667777777665554
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.97 E-value=0.085 Score=54.85 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRV 190 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~ 190 (730)
+.+.+=+..|...|.+++|.++
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred ccccccchhhhhccchhhhhcc
Confidence 3455555667778888877654
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.075 Score=49.34 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 280 IHGLCEAKRVDEALDLFRRMGEDDC--RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
...+...|++++|.+.|+.+..... +--....-.++.++.+.|++++|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334445555555555555544310 111223334455555555555555555555544
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.13 Score=47.85 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=38.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004791 174 LLMQLSKFHLVDEMKRVYLEMLDNMVVP--NIYTFNTMINGCCKVGNVGEAELYVSKIVQAG 233 (730)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 233 (730)
....+.+.|++++|...|+++...-+.. -..+.-.++.++.+.|++++|...+++.++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344556788888888888887653221 12245566777778888888888888877653
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.82 E-value=0.66 Score=46.56 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDD-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYT-YTILI 595 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~l~ 595 (730)
..+|..+++...+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567777777777777888888888888776 4577778888887665 56777788888765543 234333 34566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
..+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...|..+=++|.+ +.|...+.....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 6677788888888888866543 1222 45778888777788888888887777776 4455544444444443
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.062 Score=46.89 Aligned_cols=116 Identities=26% Similarity=0.292 Sum_probs=72.3
Q ss_pred HhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 564 YRERKVQEALLLVEKMTKM--G-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
...++.+.+...++++... | +-++... ..-.....+.++.+. ..+...++..+...|+++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHH
Confidence 4567777788877777752 2 1111110 111222233333332 235566777888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYA 697 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 697 (730)
+|..+++++.... +-|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 80 ~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 80 EALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 9999999999854 3478899999999999999999999998874 469999887644
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.76 E-value=0.65 Score=45.72 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcC
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS--DDCLPNSYTYNALIDGLYRER 567 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~~~~~~~ 567 (730)
...+.+.|+..++-.+++.+-+..+.|+ ++... .+.+.|+ .++.-+++..+ .-.+.+..+...+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 3456667777777777777766644433 22222 2233343 23333322221 111334555555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK-EGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 617 (730)
++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 344 e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 666666655555543 4666666666555443 36777777777666654
No 212
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.74 E-value=0.97 Score=47.41 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=119.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCL--PNSYTYNA 558 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 558 (730)
++..+|...+..-...|+.+...-+|++..-. ...=...|-..+.-....|+.+-|..++....+--++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34678888888889999999999999987642 1112345666666666679999988888776654332 33333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHH----H
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTV-YTYTILIEEVLKEGDFDHAH---RLLDQMVSLGLKPDVYTYTAF----I 630 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l----~ 630 (730)
.+ .-..|++..|..+++...+.- |+. ..-..-+....+.|+.+.+. +++....... . +......+ .
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~-~-~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK-E-NNGILEKLYVKFA 447 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-c-CcchhHHHHHHHH
Confidence 32 234789999999999998753 443 33333455667888888887 4443333221 1 22222222 2
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 631 Q-AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 631 ~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
+ .+.-.++.+.|..++.+|.+. ++++...|..+++.+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1 234467899999999999985 3567888888888776665
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.49 Score=47.50 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=84.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDD---CLPNSYTYNALIDGLYR---ERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
.++-.|....+++..+++.+.+.... +......--...-++.+ .|+.++|+.++..+....-.++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334555556666666666555431 00111111122233334 5666666666666443333555666665555
Q ss_pred HHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH----HHHHHCCC---CC
Q 004791 597 EVLK---------EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL----DEAEDLI----VKMNREGI---VP 656 (730)
Q Consensus 597 ~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~m~~~g~---~~ 656 (730)
.|-. ....++|++.|.+.-+. .||...=-.++..+...|.. .+..++- ..+.++|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 12367777777777664 34443322333333333421 1222222 11223332 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 657 DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
|...+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5566677888888899999999999999865
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.011 Score=44.17 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=27.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.|.+.+++++|.+.++++...+ +.+...|...+.++.+.|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555532 22344444555555555555555555555554
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=96.68 E-value=0.13 Score=52.30 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
....+|.++-++..+.+ +.|......+..+....++++.|...|++....++. ...+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567778888888877 678888888888888888899999999999886533 4556777777778889999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 647 VKMNREGIVPD---SVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 647 ~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
++..+ +.|. .......++.|+..+ .++|+++|-+-
T Consensus 396 ~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 396 DKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 99777 4464 333444455666654 67787776553
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.59 E-value=0.87 Score=44.91 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=53.7
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCChhcH--HHH
Q 004791 346 YTVLIDCLCK--ENKVDEASELLNRMLEKGLFPNVVTYNALIDG--YCKEGLMEAALQILDLMKSNNCSPNARTY--NEL 419 (730)
Q Consensus 346 ~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l 419 (730)
|..|-.++.. .|+-..|.++-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|... |..... ..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555444433 45555665555443321 22233333333322 22346666666666666542 111111 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
.-.--+.|..+.|..+-+...+.- +.-...+...+...|..|+++.|+++.+.-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 111123455555555544444331 112234445555555555555555555543
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.55 E-value=0.015 Score=43.48 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
..|.+.+++++|.++++.++..++. +...|.....++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666665433 5555666666666666777777666666663
No 218
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.43 E-value=0.072 Score=51.28 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK--PDVYTYT 627 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~ 627 (730)
..|...+..+.+.|++++|...|+.+++.. |+ ...+..++..|...|++++|...|+++++..+. .....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 345555554456688888888888888753 33 346677888888888888888888888864221 1244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.++.++...|+.++|.++++++.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667777888888888888888874
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.40 E-value=0.67 Score=48.58 Aligned_cols=99 Identities=21% Similarity=0.297 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
+.+=+..|...|.+++|.++-- .| .....|..|.......=+++-|.+.|.+.+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------------ 614 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRVRDL------------------ 614 (1081)
T ss_pred ccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc------------------
Confidence 3333445566677666654321 11 12223444544444444555555555444322
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
.+-+-+.-++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 --~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 --RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred --HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233344566777776666533 34455566777777777654
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.40 E-value=0.0089 Score=45.49 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNRE--GIVP---D-SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+|+.+..+|...|++++|++.+++..+. ...+ + ..++..++.+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666665532 0111 1 3455666666666666666666666654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.37 E-value=0.013 Score=44.55 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLK-PD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+|+.+...|...|++++|++.|++.++. |.. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666666542 111 11 44566677777777777777777776553
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.31 E-value=0.12 Score=45.06 Aligned_cols=126 Identities=26% Similarity=0.357 Sum_probs=75.8
Q ss_pred HHHHHHHHH---HHHhcCChhHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004791 518 EVIYTALID---GYCKEGKIDDAHSLLERMLSD--D-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTY 591 (730)
Q Consensus 518 ~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~--~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 591 (730)
...|..++. .....|+.+.+...++++... | .-++... ..-.......++.+. ..+.
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~ 65 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDAL 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHH
Confidence 344445532 335678888999988888874 2 1111111 011112222222221 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVPDSVTY 661 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 661 (730)
..++..+...|++++|..+.++++...+- |...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56677788899999999999999986533 788899999999999999999999988753 4888876653
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.27 E-value=0.063 Score=46.39 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=49.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
-+...|++++|..+|+-+...+ +-+..-|..|..++-..+++++|+..|......+.. |...+.....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3445566666666666655443 224444555555555566666666666555444332 44445555566666666666
Q ss_pred HHHHHHHHHH
Q 004791 362 ASELLNRMLE 371 (730)
Q Consensus 362 A~~~~~~~~~ 371 (730)
|+..|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=96.25 E-value=0.37 Score=41.78 Aligned_cols=86 Identities=15% Similarity=0.011 Sum_probs=42.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
...|++++|..+|.-+...+ +-+..-+..|..++-..+++++|+..|......+.. |...+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555554433 233344444455555555555555555554443321 3333444445555555555555
Q ss_pred HHHHHHHH
Q 004791 644 DLIVKMNR 651 (730)
Q Consensus 644 ~~~~~m~~ 651 (730)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555554
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.1 Score=51.67 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLIC 666 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~ 666 (730)
..++..+..++.+.+++.+|++..++.+..+. +|......-..+|...|+++.|+..|+++++ +.|+ ..+-+.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 34567778888899999999999999988763 4777888888899999999999999999998 4564 444445555
Q ss_pred HHHhcCCH-HHHHHHHHHHHH
Q 004791 667 AYAHLGLI-YSAFDVLKRMFD 686 (730)
Q Consensus 667 ~~~~~g~~-~~A~~~~~~m~~ 686 (730)
.-.+.... +...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44444433 334667777764
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.12 E-value=0.054 Score=54.90 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV---YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTY 661 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 661 (730)
+.+...++.+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|+.++|++.++++++.+ .+ .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 456888999999999999999999999999986433 22 458999999999999999999999999842 12 12
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 004791 662 TLLIC--AYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 662 ~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
..+.. .+....+.++..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11112233456666776766654
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=1.5 Score=44.09 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
|-..+.+++.++.-.|+.+.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4555667888888899999999999999874
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=2.7 Score=45.36 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445555667788888887776654 4788888888888888888888777665543 1334666778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
+.|+.+||.+++-+.... . -.+.+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 899999998887765421 1 4566778888888887654
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.08 E-value=0.42 Score=48.77 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 569 VQEALLLVEKMTK-MGVKPT-VYTYTILIEEVLK---------EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 569 ~~~A~~~~~~m~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
.+.|..+|.+... ..+.|+ ...|..+..++.. ..+..+|.++-++.++.+.. |......+..++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4456666666661 112232 3444444333321 23567888999999998744 8888888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCChhhh
Q 004791 638 KLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH---HTYAFLIKHLSNKKVDER 711 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~l~~~~~~e~ 711 (730)
+++.|..+|++.... .|| ..+|......+...|+.++|.+.+++.++. .|-. ......++.|+..+..+.
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPLKNN 426 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCchhhh
Confidence 999999999999984 575 677888888889999999999999997653 4533 223333446666655443
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=1 Score=42.98 Aligned_cols=148 Identities=22% Similarity=0.212 Sum_probs=92.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCH
Q 004791 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRV 289 (730)
Q Consensus 210 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 289 (730)
.......|++.+|...|......... +...--.++.+|...|+++.|..+++.+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456778888899888888876433 34556667888888899999999888887633222222222234444454444
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHH
Q 004791 290 DEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR--GCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 290 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
.+...+-.+.-.. +.|...-..+...+...|+.++|++.+-.++++ |.. |...-..++..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 4444444444332 336666667777888888888888777666554 333 55666667776666664443
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.31 Score=48.45 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
.+++.+..++.+.+++.+|++.-.+....+ ++|+...---..++...|+++.|+..|+.+++..+. |-.+-+.++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 356666777777777777777777776665 456666666667777777777777777777765333 333334444433
Q ss_pred HhcCCHH-HHHHHHHHHHH
Q 004791 354 CKENKVD-EASELLNRMLE 371 (730)
Q Consensus 354 ~~~g~~~-~A~~~~~~~~~ 371 (730)
-+..+.. ...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333322 33555555544
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.22 Score=47.71 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN----ALIDGLYRERKVQE 571 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~~~~ 571 (730)
.|+..+|-..++++.+.- +.|...+.-.-++|...|+.+.-...+++++..- .+|...|. .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 344444444444444432 2244444444444555555554444444444321 12221111 11112224444555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQ 613 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (730)
|.+.-++..+.+ +.|...-..+...+...|+..++.++..+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555444444433 33333334444444444445555444433
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.95 E-value=0.1 Score=52.93 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-V---YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 625 (730)
+.+...++.+..+|.+.|++++|+..|++.++.. |+ . .+|..+..+|.+.|++++|++.++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4567889999999999999999999999999865 54 3 458999999999999999999999999852 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 004791 626 YTAFIQ--AYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 626 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122234566777777777663
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.80 E-value=1.8 Score=40.96 Aligned_cols=201 Identities=23% Similarity=0.189 Sum_probs=116.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKK-GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID- 561 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~- 561 (730)
..+......+...+....+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555556666666666666555541 122244455555556666666666776666666543222 112222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGV--KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
.+...|+++.|...+.+...... ......+......+...++.+++...+.+............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56667777777777777655221 1223333444444566777777777777777643221355667777777777778
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 640 DEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888777763 243 444555555555666777887777777653
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.76 E-value=0.25 Score=41.34 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
|..++..++.++++.|+++....+++..- |+.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777666665443 2221110 00000 0112235567777777777
Q ss_pred HHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCh
Q 004791 667 AYAHLGLIYSAFDVLKRMF-DAGCEPSHHTYAFLIKHLSNKKV 708 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~l~~~~~ 708 (730)
+|+..|++..|+++.+... .++++-+...|..|+......-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 7777788888887777775 56677777777777766654433
No 236
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.70 E-value=2.5 Score=42.08 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 170 GYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
+|..+...=...|+.+-|..+.+ ..|+.. .-+-.+.+.|+.+.| +.+.++.| .|| -+|..|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChH---HHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHH
Confidence 35555556667788887777653 344432 234455666766666 45566654 233 23444443
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.1 Score=42.83 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=26.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
...|++.+|..+|+.......+ +...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555555544333 34444455555555566666655555543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.23 Score=46.79 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVP-DSVTYTLLIC 666 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~l~~ 666 (730)
|+.-+.. .+.|++..|...|...++..+.. ....+..|..++...|++++|..+|..+.+.- -.| -+..+.-|+.
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4433332 34566666666666666643221 22345556667777777777777777666532 011 2455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+..+.|+.++|...|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 667777777777777776654
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.51 E-value=0.32 Score=39.74 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY---TYTAFIQAYCSIGK 638 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 638 (730)
++...|+.+.|++.|.+.+..- +.....||.-..++.-+|+.++|++-+++.++..-..... .|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445556666666665555432 3445555555555555566666655555555531111111 12222334455555
Q ss_pred HHHHHHHHHHHHHCC
Q 004791 639 LDEAEDLIVKMNREG 653 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g 653 (730)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.48 E-value=1.1 Score=47.75 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS------YTYNALIDGLYR----ERKVQEALLLVEKMTKMGVKPTVYT 590 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~ 590 (730)
...++....-.|+-+.+++++.+..+.+-.-.+ -.|...+..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344455555556666666666655443211111 123333333332 34677788888888765 366555
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 591 YTI-LIEEVLKEGDFDHAHRLLDQMVSLG--L-KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 591 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
|.. -...+...|++++|++.|++..... . ......+.-++..+.-.++|++|.+.|.++.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 543 3455667888888888888765311 1 1133445566777778888888888888888754 234444544433
Q ss_pred -HHHhcCCH-------HHHHHHHHHHH
Q 004791 667 -AYAHLGLI-------YSAFDVLKRMF 685 (730)
Q Consensus 667 -~~~~~g~~-------~~A~~~~~~m~ 685 (730)
++...|+. ++|.++|++.-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34556777 77777777664
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.38 E-value=3 Score=40.89 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=28.4
Q ss_pred HhcCChHHHHHHHHHHHhCC--CCCCHH------HHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNM--VVPNIY------TFNTMINGCCKVG-NVGEAELYVSKIVQ 231 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~g-~~~~A~~~~~~~~~ 231 (730)
.+.|+++.|...+.++.... ..|+.. .|+.- ....+.+ ++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHH
Confidence 35678888888887776532 122221 12222 2233444 77777777766644
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.31 E-value=1.1 Score=36.88 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=77.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHR 609 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 609 (730)
-.|.+++..++..+..... +..-+|=+|--....-+-+-..+.++..-+ --|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3566667777776666532 333333333332223333333344433322 1111 13455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+-.+ ..+.......++.+..+|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++++.-++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 54433 2245556677788889999999999999987644 68888899999999999999999999999988886
Q ss_pred C
Q 004791 690 E 690 (730)
Q Consensus 690 ~ 690 (730)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.23 E-value=2 Score=44.17 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLK-PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+..++.+.|+.++|++.++++++.... ....+...|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33455555666666666666666553211 1233455666666666666666666666543
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.5 Score=45.43 Aligned_cols=151 Identities=17% Similarity=0.054 Sum_probs=86.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcCh----hhHHHHHHHHHhcCCHH
Q 004791 215 KVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE----VSYTNLIHGLCEAKRVD 290 (730)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~ 290 (730)
..|+..+|-..++++.+. .+-|...++--=+++.-.|+.+.-...++++... +.+|. ..-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666666654 3345555555556666667776666666666542 11332 22234445566777788
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 291 EALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE----PNVHTYTVLIDCLCKENKVDEASELL 366 (730)
Q Consensus 291 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 366 (730)
+|.+.-++..+.+ +.|..+-.++...+-..|++.++.++..+-... .. .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8877777777665 446666667777777777777777765543211 00 00111222233344556677777777
Q ss_pred HHH
Q 004791 367 NRM 369 (730)
Q Consensus 367 ~~~ 369 (730)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.14 E-value=0.64 Score=45.25 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 423 FCKRKNVHRAMSLLNELLEQN--LSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
+....+.++|+..+.+.+++- ...-..++..+..+.++.|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344556666666665555431 11112234444555555555555443
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.11 E-value=1.9 Score=37.14 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 172 NTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
..++..+.+.+....+...++.+++.+. .+....+.++..|++.+. .+....+.. ..+.+....++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555556666667776666666552 455566666666665432 222233321 11223333445555555
Q ss_pred CChhHHHHHHHhc
Q 004791 252 KDVEKGFRVFMMM 264 (730)
Q Consensus 252 g~~~~A~~~~~~m 264 (730)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.08 E-value=1.9 Score=37.09 Aligned_cols=43 Identities=7% Similarity=0.005 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 278 NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555444 23444555555555543
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.06 E-value=3.1 Score=39.10 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 284 CEAKRVDEALDLFRRMGEDD--CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
.+.|++++|.+.|+.+..+. -+-...+...++-++.+.+++++|+..+++..+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34455555555555555431 0112223334445555555555555555555544
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.05 E-value=3.1 Score=39.07 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVP---DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
.+.+-|.+.|.+..|..-+++|++. .+- ....+-.+..+|.+.|..++|.+.-+-+.. + .|+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N-~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-N-YPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-c-CCCCc
Confidence 4556788999999999999999986 222 245566777889999999999887665543 3 45443
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.04 E-value=1.1 Score=46.98 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=89.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGF 258 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 258 (730)
.-.++++++.+..+.-.-.. .-...-.+.++..+-+.|..+.|+++...-.. -.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 34577777655553111000 11233466777777788888888776543221 133455678888887
Q ss_pred HHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 259 RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG 338 (730)
Q Consensus 259 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (730)
++.++.. +...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....+|
T Consensus 339 ~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7765543 566788888888888888888888877653 4556666777777777666666665554
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 339 CEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 339 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
- ++....++.-.|++++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 45555556666777777766654
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=2.5 Score=39.04 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLG---LKPDVYTYTAFIQAYCSIGKLDEAEDL 645 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~ 645 (730)
|...|-.+....++..|..+++.--+.+ -.-+..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555566777777776643321 112455566666655 34565555444
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.73 E-value=2.4 Score=36.94 Aligned_cols=123 Identities=10% Similarity=0.002 Sum_probs=55.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHH--HHHHHhcCCh
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIY-TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF-TYTSL--ILGYCRNKDV 254 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l--i~~~~~~g~~ 254 (730)
.+.+..++|+.-|.++.+.|...-.+ ..........+.|+...|...|+++-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666554332211 22223333445566666666666655443333222 00111 1123344555
Q ss_pred hHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 255 EKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 255 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
+......+-+-..+.+--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444444433333333344444444455555555555555443
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=8.4 Score=42.38 Aligned_cols=141 Identities=20% Similarity=0.185 Sum_probs=93.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 004791 176 MQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVE 255 (730)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 255 (730)
.-+.+.|++++|...|-+.+.. +.|. -++.-|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3345779999999999887753 2332 3556666777777778888888888875 4555677889999999999
Q ss_pred HHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 256 KGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEM 334 (730)
Q Consensus 256 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (730)
+-.+..+...+..+.-| ....+..+.+.+-.++|.-+-.+... +...... .+-..|++++|++.+..+
T Consensus 449 kL~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88888776663112112 33455666666767777666554432 2222332 334568899999888765
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.68 E-value=0.71 Score=37.83 Aligned_cols=88 Identities=22% Similarity=0.122 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD---SVTYTLLICAYAHLGLI 674 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~ 674 (730)
+...|+++.|++.|.+.+..-+. ....||.-..++.-+|+.++|++-+++..+..-... ...|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34445555555555555543211 344455555555555555555555555544210111 12233333444555555
Q ss_pred HHHHHHHHHHHH
Q 004791 675 YSAFDVLKRMFD 686 (730)
Q Consensus 675 ~~A~~~~~~m~~ 686 (730)
+.|..-|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 555554444433
No 255
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.58 E-value=1 Score=37.75 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTK-MGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~~~~ 599 (730)
.|+..++.+++.+|+..+++..|+++.+...+ .+++.+..+|..|+.-..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46666666666666666666666666666654 445555666666655443
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.53 E-value=1.4 Score=46.00 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
...+.++..+-+.|..+.|+.+...-. .-.....+.|+++.|.++.++ ..+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 345666666666777776666543211 112334456777766655422 24566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
..+|+++-|.+.|.+.. | |..|+-.|...|+.+.-.++.+.....| . ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHH
Confidence 77777777777776642 1 4455555666777666666666666554 1 333344445556666666
Q ss_pred HHHHH
Q 004791 679 DVLKR 683 (730)
Q Consensus 679 ~~~~~ 683 (730)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.44 E-value=2.4 Score=35.03 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 312 TVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
...+..+.+.|+-+.-.+++.++.+ +-++++.....+..+|.+.|+..++.+++.+.-++|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555555555555555543 2234555555556666666666666666665555553
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.43 E-value=1.4 Score=37.41 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 565 RERKVQEALLLVEKMTKMGV--KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
+.|++++|.+.|+.+...-. +-....--.++.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555555555543210 112233334444555555555555555555543
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=0.54 Score=44.37 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=39.0
Q ss_pred hcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHH
Q 004791 285 EAKRVDEALDLFRRMGEDDC--RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-P-NVHTYTVLIDCLCKENKVD 360 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~ 360 (730)
+.|++.+|...|....+... .-....+-.|...+...|++++|..+|..+.+.-++ | -+..+.-|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555544444320 001122333455555555555555555555443211 0 1234444455555555555
Q ss_pred HHHHHHHHHHHC
Q 004791 361 EASELLNRMLEK 372 (730)
Q Consensus 361 ~A~~~~~~~~~~ 372 (730)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.30 E-value=4.8 Score=37.87 Aligned_cols=222 Identities=21% Similarity=0.117 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004791 428 NVHRAMSLLNELLEQNLS-PTLITYNSLIYGQCREGHLDSAYKVLHLINES-GLVPDQFTYSVFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 505 (730)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 12344555555666666666666666655432 1223444555555566666667777777
Q ss_pred HHHHHHcCCCcCHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 506 FDSLEKKGIKAGEVIYTALID-GYCKEGKIDDAHSLLERMLSDDC--LPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+....
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 77776644332 122222222 67778888888888888755221 023333444444466778888888888888875
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 583 GVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 583 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
. +. ....+..+...+...+++++|...+......... ....+..+...+...|..+++...+.+....
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 33 4677778888888888899999999888875322 2444555555555777789999888888874
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.27 E-value=8.9 Score=40.86 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYT-ALIDGYCKEGKIDDAHSLLERMLSDDC---LPNSYTYNALIDGLYRERKVQE 571 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~ 571 (730)
....+.|.++++.+.++-+ +...|. .-...+...|++++|++.|++...... ......+--+...+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567778888888877633 433333 334556678888888888887653210 1122334445555667888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH-------HHHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEE-VLKEGDF-------DHAHRLLDQMVS 616 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 616 (730)
|.+.|..+.+.. .-+..+|..+..+ +...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888754 3445555444433 3456666 777777777654
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=11 Score=40.95 Aligned_cols=345 Identities=16% Similarity=0.159 Sum_probs=185.8
Q ss_pred hhCCCCcChhhHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHC
Q 004791 265 PKKGCRRNEVSYT-----NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGR--KSEALEFFNEMSAR 337 (730)
Q Consensus 265 ~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 337 (730)
...|++.+..-|. .+++-+...+.+..|+++-..+...-... ...|.....-+.+..+ -+++++..++=.+.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3456665555444 45677778888899988887775432122 4555556666655432 23334333332222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh
Q 004791 338 GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLF----PNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA 413 (730)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 413 (730)
-. -....|..++......|+.+.|..+++.=...+.. .+..-+...+.-..+.|+.+-...++-.+... .+.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 12 24567777888888889999998887653222110 01112223333344444444444444444322 011
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH-----HhCCCCCCHHhHHH
Q 004791 414 RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI-----NESGLVPDQFTYSV 488 (730)
Q Consensus 414 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 488 (730)
..+. ....+..-|..+|.+..++. +..+ +-..|.+..+...+-.+.-+- ...+..|+ ...
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 1111 11122334555555554431 1111 112222222222222111111 01122233 223
Q ss_pred HHHHHHhcCCHHH----------HHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 489 FIDTLCKRGRVEE----------AQVLFDSLEK-KGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 489 li~~~~~~g~~~~----------A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
..+.+.+.....- -.++.+.+.. .+......+.+.-+.-+...|+..+|.++-.+.. .||-..|-
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 3344444333111 1222222222 1222333455666677788899999998877664 58888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
--+.+++..+++++-.++-+.+.. +.-|.-.+..|.+.|+.++|.+++.+.. +. .-...+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~------~l---~ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG------GL---QEKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC------Ch---HHHHHHHHHhc
Confidence 889999999999988777665442 3456667889999999999999987652 11 15677899999
Q ss_pred CHHHHHHHHHH
Q 004791 638 KLDEAEDLIVK 648 (730)
Q Consensus 638 ~~~~A~~~~~~ 648 (730)
++.+|.++.-+
T Consensus 785 ~~~eAad~A~~ 795 (829)
T KOG2280|consen 785 DVKEAADLAAE 795 (829)
T ss_pred cHHHHHHHHHH
Confidence 99999876544
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=11 Score=41.07 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhCC-----CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 380 TYNALIDGYCKEG-----LMEAALQILDLMKSNNCSPNARTYNELICGFCK-RKNVHRAMSLLNELLEQNLSPTLITYNS 453 (730)
Q Consensus 380 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (730)
....+..+|.+.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|......|.. ..+..
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHH
Confidence 3444555554432 4455666666665555 2232222211111111 23455666666666665532 22222
Q ss_pred HHHHHH----hCCChhHHHHHHHHHHhCC
Q 004791 454 LIYGQC----REGHLDSAYKVLHLINESG 478 (730)
Q Consensus 454 li~~~~----~~g~~~~a~~~~~~~~~~~ 478 (730)
+...|. ...+.+.|..++.+..+.|
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222211 1124556666666666655
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=8.2 Score=44.25 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=23.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 350 IDCLCKENKVDEASELLNRMLEKGLFPNVV--TYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+.+|-.+|++.+|..+..++... .+.. +-..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 44455555555555555444321 1111 11334444555555555555554444
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=5.4 Score=37.01 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 004791 109 VESYSSLLNLLIRNNFTKASEKIVFLMLKS 138 (730)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~ 138 (730)
...|-.-...+-.+..|+.|..-+...++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 344544445555566777766655555543
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.86 E-value=2.2 Score=36.24 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCE--PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
.+.|++++|.+.|+.+..+-+. -...+...++.+|.+.|++++|...+++.++..+..-.+-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3455555555555555544111 1223344455555566666666666666555543333333444444433
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.82 E-value=5.4 Score=41.22 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVK-PTVYTYTILIEEVLKEGDFDHAHRLLDQMV 615 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 615 (730)
.+...+.+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444444566666666666666543211 123344556666666666666666666543
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.57 E-value=0.71 Score=43.33 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 585 KPTVYTYTILIEEVLK-----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
.-|..+|...+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+..- .|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3466666666666643 34566666667777777777777777777776644321 11000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChh-hhhhhccchhhhHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVD-ERKQQCDGILFGFK 723 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~-e~~~~~~~~l~~~~ 723 (730)
+....--|- .+-+=+++++++|...|+.||..+-..|+..+++.+.. ........|..+|+
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfk 189 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFK 189 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhhc
Confidence 000000011 11233556666666666666666666666666655433 22333444444443
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.55 E-value=8.3 Score=38.02 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCC---
Q 004791 536 DAHSLLERMLSDDCLPNSYTYNALIDGLYR--E----RKVQEALLLVEKMTKMG---VKPTVYTYTILIEEVLKEGD--- 603 (730)
Q Consensus 536 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----~~~~~A~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~--- 603 (730)
+.+.+++.+.+.|+.-+..+|-+....... . ....+|..+|+.|.+.. ..++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666666665555443222222 1 13456777888887642 12344445444433 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 604 -FDHAHRLLDQMVSLGLKPDV--YTYTAFIQAYCSIG--KLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 604 -~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
.+.+..+|+.+.+.|+..+. .....++..+.... ....+.++++.+.+.|+++....|..++-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35567777777776666432 22222222221111 1456778888888888887777776665443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.45 E-value=0.23 Score=32.51 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|..+...|...|++++|+++++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.40 E-value=8.6 Score=37.75 Aligned_cols=20 Identities=5% Similarity=-0.193 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004791 666 CAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~m~ 685 (730)
..+.+.+++++|.++|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566777777777777543
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.15 E-value=0.33 Score=31.77 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 661 YTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|..+..+|...|++++|+++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.07 E-value=9.8 Score=37.49 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDC-----LPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGVKPTVYTYT- 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~~~~~~- 592 (730)
.+..++.-.+.++++++.|+...+.-. .....++..|...|.+..++++|.-+..+..+ .++..-..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344455555566666666665544210 11223566666666666777766665555443 22222222222
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 593 ----ILIEEVLKEGDFDHAHRLLDQMVS----LGLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 593 ----~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
.|.-++...|++..|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233455566777777666666654 23111 12223456677777777777777666644
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.95 E-value=17 Score=39.83 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFG-----LCRVGRKSEALEFFNEMSA-------RGCEPNVHTYTVLIDCLCKE 356 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~ 356 (730)
..+|.++++...+.| +...-..++.+ +....+.+.|+..|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666665554 23222222222 2234566667766666655 33 334555566666653
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH----hc
Q 004791 357 N-----KVDEASELLNRMLEKGLFPNVVTYNALIDGYCK-EGLMEAALQILDLMKSNNCSPNARTYNELICGFC----KR 426 (730)
Q Consensus 357 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 426 (730)
. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|......|. ...+-.+...|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 2 556678888777776543 33322222221111 2356778888888877762 222222222221 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 004791 427 KNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479 (730)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 479 (730)
.+...|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 467788888888887762 221111122222333 666666666666555543
No 275
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.72 E-value=19 Score=40.00 Aligned_cols=190 Identities=12% Similarity=0.090 Sum_probs=107.9
Q ss_pred hHHHHHHhhhcCCCCCCC--HHHHHHHHHHHH-hcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccC
Q 004791 91 TALDFSYWISQKPGFKHS--VESYSSLLNLLI-RNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLS 167 (730)
Q Consensus 91 ~al~~f~~~~~~~~~~~~--~~~~~~l~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (730)
.|+..++.+.++...+|. ..++..+.++|. ...++++|+..+...+..+.+.+ .. +.-
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~-~~---d~k--------------- 99 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR-LT---DLK--------------- 99 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hH---HHH---------------
Confidence 467777777765544443 456788888887 68899999999988776654411 11 100
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM----VVPNIYTFNTM-INGCCKVGNVGEAELYVSKIVQAG---LSPDTF 239 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~ 239 (730)
...-..++..|.+.+... |....++.++.- ..+-...|.-+ +..+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 011223455566655555 777777766541 11222233333 222333478888888888876532 233444
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHhchhCC---------CCcChhhHHHHHHHHH--hcCCHHHHHHHHHHHh
Q 004791 240 TYTSLILGYC--RNKDVEKGFRVFMMMPKKG---------CRRNEVSYTNLIHGLC--EAKRVDEALDLFRRMG 300 (730)
Q Consensus 240 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 300 (730)
++-.++.+.. +.+..+++.+..+++.... ..|...+|..+++.++ ..|+++.+.+.++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444443 4555666766666553211 1234556666666544 4677667666655543
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.69 E-value=1.5 Score=42.09 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYAFL 699 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 699 (730)
++..++..+...|+++.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+++. +.|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566666777777777777777777643 3366777777777777777777777776664 35777777766666
Q ss_pred HHHHH
Q 004791 700 IKHLS 704 (730)
Q Consensus 700 ~~~l~ 704 (730)
...+.
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 55543
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.42 E-value=0.32 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+|..|+..|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.29 E-value=1.3 Score=41.78 Aligned_cols=105 Identities=16% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 550 LPNSYTYNALIDGLYR-----ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY 624 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 624 (730)
.-|-.+|...+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 3467788888877753 3556666677888999999999999999988764422 12211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL 673 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 673 (730)
++....-.|-++ -+=+++++++|...|+.||..+-..|++++.+.|.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222233332 23466777777777777777777777777766553
No 279
>PRK09687 putative lyase; Provisional
Probab=91.95 E-value=13 Score=36.35 Aligned_cols=50 Identities=8% Similarity=-0.181 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 004791 200 VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD 253 (730)
Q Consensus 200 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 253 (730)
.+|.......+.++...|. .++...+..+.+ .+|...-...+.++++.|+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
Confidence 3455555555555555553 223333333333 2344444445555555554
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.87 E-value=8.2 Score=33.77 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=53.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHhcCCH
Q 004791 494 CKRGRVEEAQVLFDSLEKKGIKAGE-VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY-TYNALID--GLYRERKV 569 (730)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~--~~~~~~~~ 569 (730)
.+.+..++|+.-|..+.+.|...-+ ...........+.|+...|...|+++-.....|-+. -...|-. .+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555666666665555433111 111222333445556666666666555443333222 1111111 12345555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
++.....+.+...+-+-....-..|.-+-.+.|++.+|...|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444444333222222233344444455555555555555544
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.80 E-value=10 Score=34.61 Aligned_cols=177 Identities=14% Similarity=0.101 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 184 VDEMKRVYLEMLDNMVVPN-IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
.+-|+--|.+.+. +.|+ ..+||-+.--+...|+++.|.+.|+...+.++.-+....|.-|..| --|++.-|.+-|-
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHH
Confidence 3334444444443 2343 3356666666667777777777777777665444444444444333 2466666666555
Q ss_pred hchhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 263 MMPKKGC-RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP 341 (730)
Q Consensus 263 ~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 341 (730)
..-+.+. .|=-..|.-++ -+.-++.+|..-+.+-.+. .|..-|...|-.+.- |+..+ ..+++.+... -..
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~-a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKISE-ETLMERLKAD-ATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh-ccc
Confidence 4444221 01111222111 1233455555433322211 234444443333322 11111 1122222221 111
Q ss_pred C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 342 N-------VHTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 342 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
+ ..||..|...+...|+.++|..+|+-.+..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 345666666666777777777777666553
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.75 E-value=6.4 Score=34.21 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=24.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVY-TYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+.++.+++..+++.+.-. .|... .-..-...+...|++.+|+.+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445555555555555543 22211 1112223345556666666666665543
No 283
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=28 Score=39.56 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY 564 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 564 (730)
|......+-++..++.+....-.++..-.+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455555666666666665544445555555555554
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.61 E-value=9.8 Score=34.14 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
...+...|++++|...++..+.....-+ ..+-..|.+.....|.+++|..+++...+.+. .......-++++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 4556778888888888887775311111 11223455677888899999988888776442 2333445577888889
Q ss_pred CHHHHHHHHHHHHHcC
Q 004791 673 LIYSAFDVLKRMFDAG 688 (730)
Q Consensus 673 ~~~~A~~~~~~m~~~g 688 (730)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999888765
No 285
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.44 E-value=14 Score=35.45 Aligned_cols=71 Identities=21% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYA 697 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 697 (730)
+......|..+|.+.+|.++.++.+..+ +.+...|..|+..+...|+--.|.+.++++. +.|+..|...+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4455677889999999999999999854 4478889999999999999888888888774 457777665543
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.43 E-value=2.5 Score=40.65 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVPDSVTYTLL 664 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 664 (730)
++..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445566666667777777777777665433 666677777777777777777777766654 4666666655554
Q ss_pred HHH
Q 004791 665 ICA 667 (730)
Q Consensus 665 ~~~ 667 (730)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.34 E-value=0.26 Score=30.03 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 004791 658 SVTYTLLICAYAHLGLIYSA 677 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A 677 (730)
...|..++..|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444443
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.74 E-value=27 Score=38.77 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 278 NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
.+|--+.++|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5666777888888888887554433 233445556666666554
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.58 E-value=12 Score=33.11 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004791 225 YVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDC 304 (730)
Q Consensus 225 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 304 (730)
+..-+.+.++.++...+..+++.+.+.|++..-..++ ..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 3344445566666666666666666666655544433 2233344333332221111 2223333333333332
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 305 RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLE 371 (730)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 371 (730)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.++...=..+|.-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113445566666667777766666554221 222234455555555554444444444433
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.58 E-value=0.64 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.56 E-value=39 Score=39.19 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY----TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
|...++.--+.|.+.+|+.++. |+.. .|.+..+.+.....+++|.-+|+..-+ ..-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 3333444445666666665543 4443 344444555566777777777765432 112356
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVY--TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLI 674 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 674 (730)
+|..+|+|.+|+.+..++.. .-|.. +-..|+.-+..+++.-+|-++..+.... |. ..+..|++...|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHH
Confidence 77778888888888777643 11222 2256677777888888888877776642 21 223345555666
Q ss_pred HHHHHHHH
Q 004791 675 YSAFDVLK 682 (730)
Q Consensus 675 ~~A~~~~~ 682 (730)
++|..+..
T Consensus 1043 ~eAlrva~ 1050 (1265)
T KOG1920|consen 1043 EEALRVAS 1050 (1265)
T ss_pred HHHHHHHH
Confidence 66666544
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.53 E-value=0.75 Score=27.85 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555556666666666666665554
No 293
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.31 E-value=3.3 Score=36.59 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCC-------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLK---EGD-------FDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIG 637 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 637 (730)
++.|.+.++.....+ +.|...++.-..++.. ... +++|+.-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 456666666654444 4566555544444433 333 33344444444443 443 456777777776544
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004791 638 K-----------LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCE 690 (730)
Q Consensus 638 ~-----------~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 690 (730)
. +++|.+.|++..+ ..|+..+|+.-+... ++|-++..++.+.|..
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 2 4555555666655 457777777655443 3566677776665543
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.14 E-value=21 Score=35.30 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHH
Q 004791 396 AALQILDLMKSNNCSPNARTYNEL 419 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~l 419 (730)
.+.++++.+.+.|++.....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 344445555555544444444433
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.09 E-value=5.2 Score=36.00 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNI--YTFNTMINGCCKVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 231 (730)
..+..+..-|.+.|+.+.|++.|.++.+....+.. ..+..+|....-.+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677788888888888888888888876444433 2566777777778888888777777654
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.01 E-value=27 Score=36.40 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=41.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
|.....+++..+....+..-.+.+..+|...|- +-..+..++.+|... ..+.-..+|+++.+.. -.|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 333444445555554444444555555544432 333444555555444 3344444555444433 122222222333
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004791 562 GLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~ 581 (730)
-|- .++.+.+..+|.++..
T Consensus 141 ~yE-kik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-HhchhhHHHHHHHHHH
Confidence 222 2444455555554443
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.94 E-value=0.81 Score=27.68 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.86 E-value=15 Score=33.46 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
|-..-|+.-|.+.....+. -+.+||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|.. .--|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 3344444444444443332 3456666666667777777777777777766522222233332222 2356666666655
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 577 EKMTKMGVKPTV--YTYTILIEEVLKEGDFDHAHRLL-DQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 577 ~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
-+.-+.+ +.|+ ..|-.+.. ..-+..+|..-+ ++... .|..-|...+-.|. .|++.+ ..+++++....
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a 226 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKADA 226 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc
Confidence 5554433 2222 22222221 122344444333 33322 23334443333222 122211 12333333211
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 654 IVPD-------SVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 654 ~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
..+ ..||-.|+.-+...|+.++|..+|+-.+..
T Consensus 227 -~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 -TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 346777777778888888888888877654
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.75 E-value=0.45 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 611 LDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
|++.++..+. +...|..+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677776544 8889999999999999999986
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.66 E-value=3.1 Score=32.24 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
=++.+-++.+...++.|++....+.+.+|.+.+++.-|+++++-...+ +..+...|..++.-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 345555566666666677777777777777777777777777766533 222344555555433
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.26 E-value=41 Score=37.49 Aligned_cols=194 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHH---
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLD-NMVVP--NIYTFNTMINGCC-KVGNVGEAELYVSKIVQAGLSPDTF--- 239 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~--- 239 (730)
++..|..+|. -|+..++-+.+ ..+.| +..++..+...+. ...++++|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 35555655553 22333 3345666777766 5678888888888775542222221
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHhchhCCCC--cCh--hhHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCChh
Q 004791 240 --TYTSLILGYCRNKDVEKGFRVFMMMPKKGCR--RNE--VSYTNL-IHGLCEAKRVDEALDLFRRMGEDD---CRPTVR 309 (730)
Q Consensus 240 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~--~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ 309 (730)
....++..+.+.+... |....++..+.--. -.. ..+.-+ +..+...+++..|.+.++.+.... ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234566666666655 77777765542111 111 112222 222223378888888887775531 233344
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004791 310 TYTVVIFGLC--RVGRKSEALEFFNEMSARGC---------EPNVHTYTVLIDCLC--KENKVDEASELLNRML 370 (730)
Q Consensus 310 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 370 (730)
.+-.++.+.. +.+..+++.+..+.+..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444 34556667666666533211 223455666665554 4666666666655553
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.24 E-value=6 Score=35.61 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH------H
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DS------V 659 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~------~ 659 (730)
..+..++..|++.|+.++|.+.|.++.+....+. ...+-.++......|++..+...+.+....--.. |. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4456677777777777777777777776543332 3345666777777778887777777665421111 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+|.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~g--L~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEG--LANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHHhchHHHHHHHHHccC
Confidence 2222 23455688888888777664
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=3.3 Score=43.50 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK 600 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 600 (730)
.+.++..+.+.|..++|+++- +|...- .....+.|+++.|.++..+. .+..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 444555555666666655432 121111 12223456666666655432 345566677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDV 680 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 680 (730)
.|++..|.+.|.+... |..|+-.+...|+.+.-..+-....+.| +.| ....+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHH
Confidence 7777777777765532 3345555556666665555555555555 112 222345566777776666
Q ss_pred HHH
Q 004791 681 LKR 683 (730)
Q Consensus 681 ~~~ 683 (730)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 544
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=40 Score=37.18 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=11.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 004791 384 LIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~ 405 (730)
|+..|...+++.+|++++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555555555555555554433
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.09 E-value=0.022 Score=49.50 Aligned_cols=84 Identities=5% Similarity=0.040 Sum_probs=42.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 004791 174 LLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD 253 (730)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 253 (730)
++..+.+.+.+......++.+...+...+....+.++..|++.++.++...+++. .+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3444455566666666666666554444555566666666666555555555541 111222334455555555
Q ss_pred hhHHHHHHHhc
Q 004791 254 VEKGFRVFMMM 264 (730)
Q Consensus 254 ~~~A~~~~~~m 264 (730)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555444
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.68 E-value=11 Score=33.95 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPT-----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
+.+.|++++|..-|.++++.- ++. ...|..-..++.+.+.++.|++-..+.++.++. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 445555555555555555432 111 122333333444555555555555555443321 1222222233444455
Q ss_pred CHHHHHHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNR 651 (730)
Q Consensus 638 ~~~~A~~~~~~m~~ 651 (730)
++++|++-++++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555554
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.56 E-value=24 Score=33.90 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
+++.....|..+|.+.+|.++.+..+..+. .+...+-.|+..+...|+--.|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556777788888888888888776643 367777888888888888666766666654
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.55 E-value=1.4 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.|..++..+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666654
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.27 E-value=1.2 Score=26.74 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666665554
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.86 E-value=2.9 Score=32.78 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
+..+-++.+...++.|++.+....+.+|.+.+++..|+++++-+..+ +.+....|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 44455555555666677777777777777777777777777766543 222222565555443
No 311
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=87.71 E-value=49 Score=36.48 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
....+.++..-...+...-.-++..|.+.|-.+.|.++.+.+-..- -...-|..-+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-- 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL-- 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 4444444443323344455566666777777777766666554321 112233344444455555444444444333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVPDSVTYTLLICA--YAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 618 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
..|+..|... ..++++.+.... +.+....|..+-.. ..+.|++.+|.+.+-.++..++.|...
T Consensus 466 -------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 466 -------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 2333333211 112222111110 11111112122111 244588889988888888887888776
Q ss_pred HHHHHHHHH
Q 004791 695 TYAFLIKHL 703 (730)
Q Consensus 695 ~~~~l~~~l 703 (730)
-...|.+.+
T Consensus 532 ~~~LL~d~l 540 (566)
T PF07575_consen 532 WPLLLCDAL 540 (566)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 655555544
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.32 E-value=3.2 Score=40.32 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
..-|.+.|.+++|+.+|...+... +-|.+++..-..+|.+.+.+..|..-.+.++..+ +.-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 455777788888888887766643 2377777777777888777777777666665432 11122344444444455666
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 004791 640 DEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~ 657 (730)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 666666666665 4555
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=10 Score=40.00 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRM 299 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (730)
..-|..|.++..+.|++..|.+.|.+.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344455555555555555555544443
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.07 E-value=38 Score=34.54 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP---NSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
...+|..+...+.+.|.++.|...+.++...+... .+.....-+..+...|+..+|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888877643111 334444455666677888888888877776
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.86 E-value=55 Score=36.18 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRP---TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN 357 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 357 (730)
+.+.+.+.+++|++..+..... .| -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3444555555555544443222 11 1223444555555555555555555555433 3334444444444444
Q ss_pred C
Q 004791 358 K 358 (730)
Q Consensus 358 ~ 358 (730)
+
T Consensus 438 ~ 438 (846)
T KOG2066|consen 438 Q 438 (846)
T ss_pred c
Confidence 3
No 316
>PRK09687 putative lyase; Provisional
Probab=86.29 E-value=35 Score=33.43 Aligned_cols=233 Identities=13% Similarity=0.073 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCcCHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV----EEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
|.......+..+...|. +++...+..+.. .+|.......+.++.+.|+. +++...+..+.... ++..+..
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHH
Confidence 44444445555555553 223333333332 23555556666666666653 35566666553332 3455555
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 523 ALIDGYCKEGKI-----DDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 523 ~li~~~~~~g~~-----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
..+.++...+.. ..+...+...... ++..+-...+.++.+.++ ++++..+-.+.+ .+|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 555555554321 2233344333332 345555566666666665 456666666665 2444455555555
Q ss_pred HHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 598 VLKEG-DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 598 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 676 (730)
+...+ +...+...+..+.. .++..+-...+.++.+.|. ..|+..+-+..+.+ + .....+.++...|.- +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55443 24456666666664 4466667777778888777 56666666666543 2 234567777777874 6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 677 AFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
|+..+.++.+. .||...-...+..+.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888888764 456666655555543
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=29 Score=32.23 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHh
Q 004791 567 RKVQEALLLVEKMTKM--GVKPTV---YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF------IQAYCS 635 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~--~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------~~~~~~ 635 (730)
.++++|+..|++.-+. |-..+. ..+.-+...-...+++.+|+++|++.......-+..-|..- .-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555666666555441 111111 12222333345677888888888887765443222222211 111112
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 636 IGKLDEAEDLIVKMNR 651 (730)
Q Consensus 636 ~g~~~~A~~~~~~m~~ 651 (730)
.++.-.+...+++-.+
T Consensus 208 ~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE 223 (288)
T ss_pred cccHHHHHHHHHHHHh
Confidence 2455555666666666
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.58 E-value=50 Score=34.53 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK 530 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 530 (730)
..+++..+.......-...+..+|.+.| .+...+..++++|... ..++-..+++++.+..+. |++.-..|...|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2333444444444444 333444444444444332 23333333333322
Q ss_pred cCChhHHHHHHHHHHh
Q 004791 531 EGKIDDAHSLLERMLS 546 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~ 546 (730)
++.+.+...|.++..
T Consensus 145 -ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 -IKKSKAAEFFGKALY 159 (711)
T ss_pred -hchhhHHHHHHHHHH
Confidence 444444444444443
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.20 E-value=6.7 Score=38.18 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=63.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
.+-|.++|++++|++.+...+... +-|.+++..-..+|.+..++..|..=-..++..+ ..-...|.--+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456889999999999999887764 3488888888889999888887776666665432 11223344444444445666
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 004791 605 DHAHRLLDQMVSLGLKPD 622 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~ 622 (730)
.+|.+-++..+.. .|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 6676666666654 454
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.07 E-value=2.4 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.+++.|+..|...|++++|..++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467778888888888888888888775
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.93 E-value=15 Score=33.12 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPN-----SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
-+.+.|++++|..-|...+..- ++. .+.|..-..++.+.+.++.|+.--.+.++.+ +.......--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 3455666666666666655542 221 1223333344555566666666555555544 11222222334455555
Q ss_pred CCHHHHHHHHHHHHHC
Q 004791 602 GDFDHAHRLLDQMVSL 617 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~ 617 (730)
..+++|++-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666554
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.57 E-value=9.4 Score=33.82 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLY---RERKVQE-------ALLLVEKMTKMGVKPTVYTYTILIEEVLKEG- 602 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~---~~~~~~~-------A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g- 602 (730)
++.|.+..+.....+ |.|...++.-..++. +.....+ |+.-|++.+... +....++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Confidence 556677776655555 566666555444443 3444344 444445555433 234578888888886544
Q ss_pred ----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 603 ----------DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 603 ----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
.+++|.+.|+++.. ..|+..+|+.-+... +.|-++..++.+++.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 25666667777666 478888888877665 357777777777654
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.08 E-value=28 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=9.3
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 004791 528 YCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~ 546 (730)
+...|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555433
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.99 E-value=39 Score=31.97 Aligned_cols=185 Identities=12% Similarity=0.107 Sum_probs=104.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCcCHHHHHHHHHHHHhcC
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQ---FTYSVFIDTLCKRGRVEEAQVLFDSLEKK---G--IKAGEVIYTALIDGYCKEG 532 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g 532 (730)
..+.++|+.-|+...+....-.. .....++....+.+++++....+.++..- . -.-+....|.+++.-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34778888888887765333233 33445677778888888888888776531 0 1113445566666655555
Q ss_pred ChhHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCC-------HHHHHHHHH
Q 004791 533 KIDDAHSLLERMLSDD-CLPNS----YTYNALIDGLYRERKVQEALLLVEKMTKMGV----KPT-------VYTYTILIE 596 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~-~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~~~-------~~~~~~l~~ 596 (730)
+.+--.+.++.-++.- -..+. .|-..|...|...+.+.+..++++++...-. ..| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 5555555555433210 00111 2334566667777777777777777664211 222 345666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLG-LKPDVYTYTAFIQA-----YCSIGKLDEAEDLI 646 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~ 646 (730)
+|..+++-.+...++++.+... --|.+... ..|+- ..+.|++++|-.-|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 7777777777777777766522 12333222 23332 34567777776533
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.67 E-value=2.9 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887764
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=8.2 Score=37.23 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 429 VHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
.++++.++..=+.-|+-||.++++.+++.+.+.+++.+|..+...|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444455555555555555555544444444333
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.45 E-value=28 Score=29.87 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004791 633 YCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~ 651 (730)
+...|+|++|.++|++..+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444555555555555544
No 328
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.39 E-value=62 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHhch
Q 004791 187 MKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAG-LSPDTFTYTSLILGYCRNKDVEKGFRVFMMMP 265 (730)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (730)
...+|+++... +..|+..|...+..+-+.+.+.+...+|.+|.... ..||..++.+. .-|-..-+++.|+.+|..-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHh
Confidence 34455555543 34588888888888877777888888888887653 33444333221 12223334788888887766
Q ss_pred hC
Q 004791 266 KK 267 (730)
Q Consensus 266 ~~ 267 (730)
+.
T Consensus 168 R~ 169 (568)
T KOG2396|consen 168 RF 169 (568)
T ss_pred hc
Confidence 53
No 329
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.81 E-value=52 Score=32.50 Aligned_cols=123 Identities=19% Similarity=0.097 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE-------GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----I 636 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 636 (730)
+..+|...|+++.+.|..+-..+...+...|..- -+...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5555566665555555222112222233322221 12236777777776655 33344444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG---------------LIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.+.++|..+|++..+.|- ......+. .+...| +...|..++......|.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 367777888887777662 22233333 444444 7777888888887777666555555
No 330
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.62 E-value=34 Score=30.25 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRM 299 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m 299 (730)
+..++..+...|++-+|.++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 444555555666666666665554
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.26 E-value=2.1 Score=25.41 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555556666666666666654
No 332
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=86 Score=34.54 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSY--TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
++..-|+-++|..+.++|.... .|-.. -.-++..+|+-.|+.....+++.-.... +..|..-+..+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4555677778888888887653 22111 1234556777788877777777665543 355666666666677777888
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 605 DHAHRLLDQMVSLGLKPDVY--TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+....+..-+.+. ..|-+. +--.|.-+|+-.|. .+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 8888877766653 344332 22344555666664 789999999885
No 333
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=81.97 E-value=65 Score=33.05 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
..|+.-|...|+..+|...++++----+. ...++.+++.+.-+.|+-...+.+++..-..| ..|-+.|-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhh
Confidence 34555666677777777766665332221 45566777777777777666666666665554 34444454444
No 334
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.69 E-value=61 Score=32.57 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS---IGKLDEAEDLI 646 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 646 (730)
+.-+.+++++++.+ +.+......++..+.+..+.++..+-|++++..... +...|..+++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455555555553 344555555566666666666666666666654322 45555555544322 12344555544
Q ss_pred HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 647 VKMNRE------GI------VPD-----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 647 ~~m~~~------g~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+..+. +. .++ ...+..+...+...|..+.|+.+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 000 11233334445667888888888887776655
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.50 E-value=65 Score=32.76 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVP---DQFTYSVFIDTLCKRGRVEEAQVLFDSLEK 511 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 511 (730)
..+|..++..+.+.|.++.|...+..+...+... ........+..+-..|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666665533111 222333334445555666666666665555
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.20 E-value=25 Score=31.94 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A 642 (730)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.14 E-value=2.9 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m 684 (730)
++..|...|++++|.+.|++.
T Consensus 7 lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=19 Score=34.87 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 603 DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+.++++.++..=++.|+-||..+++.+++.+.+.|++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555544555555555555555555555555555555444444
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.92 E-value=5.4 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678889999999999999999998763
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.67 E-value=15 Score=30.23 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
..+-+..+...++.|++......+.+|.+.+++..|+++|+-+..+ +.+....|-.+++-+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 3444555556666777777777777777777777777777766543 333334455555444
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.50 E-value=11 Score=34.41 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLI 665 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~ 665 (730)
|.+.-++.+.+.+.+++|+...++-++..+. |...-..++..|+-.|+|++|..-++-.-+ +.|+ ...|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 3455677888999999999999888886533 666777889999999999999998888776 3343 55566665
Q ss_pred HH
Q 004791 666 CA 667 (730)
Q Consensus 666 ~~ 667 (730)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 43
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.38 E-value=3.5 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.08 E-value=22 Score=32.31 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 535 DDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM---GVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 535 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
++|.+.|-.+...+...++.....|...|. ..+.++++.++.++.+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666655554444444444444443 55666666666666542 22456667777777777777766653
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.95 E-value=17 Score=33.20 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL--KPDVYTYTAFIQA 632 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~ 632 (730)
|.+..++.+.+.+..++++...++-++.. +.|...-..++..+|-.|++++|..-++-.-.... .+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556778888999999999998888765 55677777889999999999999988877766422 2234456666543
No 345
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.78 E-value=1.2 Score=38.48 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCC
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKR 288 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 288 (730)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4566666778888888888888766666778888888888888777777777763222 222345556666666
Q ss_pred HHHHHHHHHHH
Q 004791 289 VDEALDLFRRM 299 (730)
Q Consensus 289 ~~~A~~~~~~m 299 (730)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665554
No 346
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.23 E-value=93 Score=32.61 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHC-CCCCCHH
Q 004791 585 KPTVYTY-TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY---CSIGKLDEAEDLIVKMNRE-GIVPDSV 659 (730)
Q Consensus 585 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~-g~~~~~~ 659 (730)
.++..++ +.++..+.+.|-.++|...+..+... ++|....|..++..- ..+| ..-+.++++.|... | .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 4555444 45677777888888888888888775 345676777666532 2233 66777788877754 4 5666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.|.....-=...|..+.+-.++.+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 776666555567777776666665543
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.76 E-value=1.2e+02 Score=33.72 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhC---CChhHHHHHHHHHHh
Q 004791 449 ITYNSLIYGQCRE---GHLDSAYKVLHLINE 476 (730)
Q Consensus 449 ~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 476 (730)
..+..||..|.+. .+..+|.+++-.+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566677777653 356666666655544
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.56 E-value=18 Score=28.19 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
++.+-++.+...++.|+..+..+.+++|.+..++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555566666666666666666666666666666555
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.13 E-value=57 Score=29.53 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVYTY-----TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
...+...+++++|..-++..+.. +....+ --|.......|.+|+|+..++.....++. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 44567788888888888877753 222222 23456677889999999988877654332 333455667888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004791 635 SIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g 653 (730)
..|+-++|+.-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999988864
No 350
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.14 E-value=1e+02 Score=32.25 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 004791 355 KENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLM 394 (730)
Q Consensus 355 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 394 (730)
..+.++...+++..+...|.....+.+|.-...|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3566777777777777666555555566666666666644
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.05 E-value=60 Score=30.28 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 662 TLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
-.++..+.+.|+.++|.++|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555666677777777777777654
No 352
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.71 E-value=1.4e+02 Score=33.44 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=30.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCC---KVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~A~~~~~~~~~ 231 (730)
+...++.||..+.+.|++++....=.+|.+.- +.....|..-+.... ..+...++..+|++.+.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 45556666666666666666555555554431 223333333332221 22445555555555544
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.25 E-value=39 Score=26.77 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+..+-++.+...++.|++.+..+.+.+|.+..++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666667777777777777777777777777777776653
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.80 E-value=1.6e+02 Score=33.49 Aligned_cols=225 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVH-------TYTVLI-DCLCKENKVDEASELLNRMLEK----GLFPNVVTYNALID 386 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~li~ 386 (730)
...+++++|..+..++...-..|+.. .++.+- ......|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678889988888876553333322 233222 2233468888888888877664 12335566677777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHH-----HHHHhcCCHHHH--HHHHHHHHHCC---CC---CChhhHHH
Q 004791 387 GYCKEGLMEAALQILDLMKSNNCSPNARTYNELI-----CGFCKRKNVHRA--MSLLNELLEQN---LS---PTLITYNS 453 (730)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~~~~~~A--~~~~~~~~~~~---~~---~~~~~~~~ 453 (730)
+..-.|++++|..+..+..+..-..+...+.... ..+...|....+ ...+....... .+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988887766542233433332222 234455633322 22333222210 11 11223344
Q ss_pred HHHHHHhC-CChhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHH
Q 004791 454 LIYGQCRE-GHLDSAYKVLHLINESGLVPDQFTY--SVFIDTLCKRGRVEEAQVLFDSLEKKGIKA----GEVIYTALID 526 (730)
Q Consensus 454 li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~ 526 (730)
+..++.+. +...++..-++.-......|-.... ..++......|+.++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 1222222222222222222222222 256777778899999998888876543222 2222122222
Q ss_pred H--HHhcCChhHHHHHHHH
Q 004791 527 G--YCKEGKIDDAHSLLER 543 (730)
Q Consensus 527 ~--~~~~g~~~~A~~~~~~ 543 (730)
. ....|+..++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2346777776666554
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.91 E-value=1e+02 Score=30.97 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
+...+..+|..+.|..+++-+.+.++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33445677888888888888877654
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.95 E-value=6.2 Score=23.29 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445556666666666666666665
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.83 E-value=1.7e+02 Score=33.14 Aligned_cols=224 Identities=14% Similarity=0.141 Sum_probs=119.7
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChh-------cHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHH
Q 004791 388 YCKEGLMEAALQILDLMKSNNCSPNAR-------TYNELIC-GFCKRKNVHRAMSLLNELLEQ----NLSPTLITYNSLI 455 (730)
Q Consensus 388 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~li 455 (730)
.....++++|..+..++...-..|+.. .++.+-. .....|+.++|.++-+..+.. -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788899988888776532122221 2333322 223578889999888877664 1234556677778
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHhHH---HH--HHHHHhcCCH--HHHHHHHHHHHHc---CCC---cCHHHHH
Q 004791 456 YGQCREGHLDSAYKVLHLINESGLVPDQFTYS---VF--IDTLCKRGRV--EEAQVLFDSLEKK---GIK---AGEVIYT 522 (730)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~--~~A~~~~~~~~~~---~~~---~~~~~~~ 522 (730)
.+..-.|++++|..+..+..+....-+...+. .+ ...+...|+. .+....|...... ... +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887665532222333332 22 2334556633 2233333333221 001 1123444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERML----SDDCLPNSYT--YNALIDGLYRERKVQEALLLVEKMTKMGVKP----TVYTYT 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~----~~~~~~ 592 (730)
.+..++.+ ++.+..-...-. .....|-... +..|+......|+.++|...++++......+ +-.+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333332222222 2221121222 2356777788999999999999887632222 222222
Q ss_pred HHHH--HHHHcCCHHHHHHHHHHH
Q 004791 593 ILIE--EVLKEGDFDHAHRLLDQM 614 (730)
Q Consensus 593 ~l~~--~~~~~g~~~~A~~~~~~~ 614 (730)
..+. .....|+.+++.....+-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222 234678888887777663
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.69 E-value=1e+02 Score=30.38 Aligned_cols=115 Identities=16% Similarity=0.076 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE-------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----E 601 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~ 601 (730)
+..+|..++++..+.|..+...+...+...|... .+...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5556666666665555322212233333333221 12236777777776655 33344444444432 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCC
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG---------------KLDEAEDLIVKMNREGI 654 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~ 654 (730)
.+.++|...|.+.-+.|. ......+. .+...| +...|...+......+.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 467778888887777664 22222222 344444 55566666666665553
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.64 E-value=5.4 Score=22.36 Aligned_cols=19 Identities=26% Similarity=0.003 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~ 681 (730)
.+..++...|+.++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555544
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.93 E-value=1.1e+02 Score=29.85 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 584 VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
..++..+...++..++..+++.+-.++++..... ++.-|...|..++......|+..-..++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3566677777778888888888888887777654 4455777788888877777776655555443
No 361
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.87 E-value=50 Score=26.07 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=32.3
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD 303 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 303 (730)
..+...|+|++|..+.+.+. .||...|.+|-. .+.|-.+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34556677777777766664 277777765543 35566666666666666555
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.88 E-value=72 Score=27.48 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVT-YNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
.++.+++..+++.|.-. .|+..- -..-...+.+.|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666665543 222111 111223345566666666666666554
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.39 E-value=1.1e+02 Score=29.23 Aligned_cols=239 Identities=15% Similarity=0.151 Sum_probs=106.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcCHH----HH
Q 004791 453 SLIYGQCREGHLDSAYKVLHLINES-----GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK--GIKAGEV----IY 521 (730)
Q Consensus 453 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~----~~ 521 (730)
.++....+.|++++..+.+.++... -..-+..+.+.+++......+.+--..+++.-.+. +.+ +.. +-
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTN 148 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTN 148 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeecc
Confidence 3444555555555555555544321 00112334455555554444444444444332211 000 111 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC----C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDC----L-------PNSYTYNALIDGLYRERKVQEALLLVEKMTKM-GVKPTVY 589 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~----~-------p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~ 589 (730)
..|...|...|.+.+...+++++...-. . .-...|..=|..|....+-.+-..+|++.+.. .--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455555666666666666655543210 0 11235566666776666666666777766531 1134444
Q ss_pred HHHHHH----HHHHHcCCHHHHHHHHHHHHH----CCCCCCHH---HHHHHHHHHHhcCC----HHHHHHHHHHHHHCCC
Q 004791 590 TYTILI----EEVLKEGDFDHAHRLLDQMVS----LGLKPDVY---TYTAFIQAYCSIGK----LDEAEDLIVKMNREGI 654 (730)
Q Consensus 590 ~~~~l~----~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~---~~~~l~~~~~~~g~----~~~A~~~~~~m~~~g~ 654 (730)
....+- .+..+.|++++|..-|=++.+ .| .|... -|..|.+.+.+.|- -++|. -..-
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAK-------PyKN 300 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAK-------PYKN 300 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccC-------CCCC
Confidence 433322 234566777776543333332 23 22222 23444455554441 11111 0001
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004791 655 VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH 702 (730)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 702 (730)
.|...+...|+.+|.. ++..+-.++++.-. ..+-.|++.-..+-+.
T Consensus 301 dPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~-~~IM~DpFIReh~EdL 346 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQN-NDIIEFERILKSNR-SNIMDDPFIREHIEDL 346 (440)
T ss_pred CHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh-ccccccHHHHHHHHHH
Confidence 2344556667776654 44444444443332 2355555554444333
No 364
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.25 E-value=1.1e+02 Score=29.43 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004791 211 NGCCKVGNVGEAELYVSKIVQAGLSPDT 238 (730)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 238 (730)
+-..+.+++++|+..+.++...|...|.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~de 38 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDE 38 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhh
Confidence 3334445555555555555555444443
No 365
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.93 E-value=3.4e+02 Score=34.89 Aligned_cols=314 Identities=12% Similarity=0.062 Sum_probs=152.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHh-chhCCCCcChhhHHHHHHH
Q 004791 208 TMINGCCKVGNVGEAELYVSKI----VQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMM-MPKKGCRRNEVSYTNLIHG 282 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~li~~ 282 (730)
++..+-.+.+.+.+|...++.- .+.. -....|-.+...|...+++|....+... ... |+ ....|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----cc---HHHHHHH
Confidence 4445566778888888888773 2110 1122233344478888888877666653 211 22 2234445
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCCHHH
Q 004791 283 LCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVL-IDCLCKENKVDE 361 (730)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 361 (730)
....|++..|...|+++.+.+ ++...+++-++......|.++..+-..+-.... ..+....++.+ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 567788888888888888775 334667777777777777777777655554433 12223333322 233345666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHH--HHHHHhCC--CHHHHHHHHHHHHhCCC--------CC-ChhcHHHHHHHHHhcCC
Q 004791 362 ASELLNRMLEKGLFPNVVTYNAL--IDGYCKEG--LMEAALQILDLMKSNNC--------SP-NARTYNELICGFCKRKN 428 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~~~--------~~-~~~~~~~li~~~~~~~~ 428 (730)
....+. .. +..+|... +..+.+.. +.-.-.+..+.+++.-+ .. -...|..++....-..
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e- 1608 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE- 1608 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-
Confidence 555544 11 33333332 22222221 11111123332222110 00 0122333322221111
Q ss_pred HHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhCCChhHHHHHHHH-HHhC----CCC-CCHHhHHHHHHHHHhc
Q 004791 429 VHRAMSLLNELLEQNLSPTL------ITYNSLIYGQCREGHLDSAYKVLHL-INES----GLV-PDQFTYSVFIDTLCKR 496 (730)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~-~~~~----~~~-~~~~~~~~li~~~~~~ 496 (730)
.+.-.+.+. +..++. ..|..-+..-....+..+-+-.+++ +... +.. --..+|....+...+.
T Consensus 1609 l~~~~~~l~-----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1609 LENSIEELK-----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred HHHHHHHhh-----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 000000000 111111 1222222111111112221111221 1111 111 1235677777777778
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDD 548 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 548 (730)
|+++.|...+-.+.+.+ -..++-......-..|+...|+.++++.++..
T Consensus 1684 G~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 88888888777776665 23455566677778888888988888887643
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.62 E-value=2e+02 Score=31.74 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 004791 204 YTFNTMINGCCKVGNVGEAELYVS 227 (730)
Q Consensus 204 ~~~~~ll~~~~~~g~~~~A~~~~~ 227 (730)
.-|+ .+..+.-.|++++|.+++.
T Consensus 150 ~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 150 DFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hHHH-HHHHHHHcCCHHHHHHHHH
Confidence 3444 5666666677777776663
No 367
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.44 E-value=1.7e+02 Score=30.48 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=61.9
Q ss_pred hcCChhHHH-HHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 250 RNKDVEKGF-RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328 (730)
Q Consensus 250 ~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (730)
..|++-.|- ++|+.+......|+.+.. ....+...|+++.+...+....+. +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 345554443 334433332222333322 223345567777776666554332 1223445566666666777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 329 EFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 329 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
..-+-|+...++ +...........-..|-++++...++++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 766666665554 4444443333344456666666666666544
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.41 E-value=63 Score=25.53 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=25.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
.+...|+|++|..+.+.+ ..||...|..|. -.+.|..+.+...+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555555555555444 245555554442 234555555555555555544
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=1.3e+02 Score=29.00 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=31.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHH-------HHHHHHHhcCCHHHHHHH
Q 004791 454 LIYGQCREGHLDSAYKVLHLINESGLVPDQFTYS-------VFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 454 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~ 505 (730)
+.+-..+.+++++|+..+.++...|...|..+.+ .+...|...|+...-.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4455566777888888888877777766665433 344455555555444433
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.69 E-value=65 Score=30.97 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=37.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHH-----
Q 004791 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLC----- 284 (730)
Q Consensus 210 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----- 284 (730)
|.++...+++.++..+.-+--+.--+....+...-|-.|.|.|+...+.++-..-...--..+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 344444455544444333332211111222233333445556665555555554443221122333444444333
Q ss_pred hcCCHHHHHHHH
Q 004791 285 EAKRVDEALDLF 296 (730)
Q Consensus 285 ~~g~~~~A~~~~ 296 (730)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356666666655
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.48 E-value=80 Score=30.38 Aligned_cols=87 Identities=9% Similarity=-0.019 Sum_probs=40.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----
Q 004791 455 IYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK---- 530 (730)
Q Consensus 455 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 530 (730)
|+++...+++.++....-+-.+.--+........-|-.|.+.+....+.++-.......-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544333222111112233333344456666666665555555443222223335554444433
Q ss_pred -cCChhHHHHHH
Q 004791 531 -EGKIDDAHSLL 541 (730)
Q Consensus 531 -~g~~~~A~~~~ 541 (730)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56666666555
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.42 E-value=14 Score=24.14 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=14.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 004791 174 LLMQLSKFHLVDEMKRVYLEMLDN 197 (730)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~ 197 (730)
+..+|...|+.+.|+.++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666654
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.11 E-value=31 Score=36.59 Aligned_cols=100 Identities=17% Similarity=0.046 Sum_probs=63.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHR 609 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 609 (730)
..|+...|...+...........-+....|.....+.|...+|-.++.+.+... ...+-++..+..++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 467777777777666554322223344455566666677777777777766644 3445566777788888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
.|+++++...+ +.+.-+.|..
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHH
Confidence 88888776433 4444444443
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.78 E-value=35 Score=36.20 Aligned_cols=99 Identities=7% Similarity=-0.065 Sum_probs=52.8
Q ss_pred cCHHhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 004791 166 LSVKGYNTLLMQLSK-FHLVDEMKRVYLEMLDNMVVPNI---YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTY 241 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 241 (730)
+....+..+...|.+ .|...+|+..+...+-. .++. ....++...+-+.|...+|--++..+........ .-+
T Consensus 210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf--~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t-~n~ 286 (886)
T KOG4507|consen 210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHF--SSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT-SNY 286 (886)
T ss_pred chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhh--CCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc-ccc
Confidence 334455566666665 46777777777666543 2221 2345566666677777777666655443211000 012
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhC
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKK 267 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (730)
-.+.+++...|++.....-|+...+.
T Consensus 287 y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 287 YTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred eeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 33455556666666666666555543
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.20 E-value=34 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLI 700 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 700 (730)
+.-++.+.|++++|.+..+.+++. +|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 444556666666666666666653 56555544443
No 376
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.95 E-value=2.7e+02 Score=31.65 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=68.2
Q ss_pred HHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHCCCCCC
Q 004791 599 LKEGDFDHAHRLLDQMVSL------GLKPDVYTYTAFIQAYC---------------SIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
...|.+.+|.+.|+.++-. +-+-+..-...++..++ ..+..+.+.++..-.....+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4678999999999988752 11112222333333331 12344555444444444445553
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 004791 658 --SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 658 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~ 706 (730)
..+....++.+.+.+++..|-.+-.++++.+..|+...-..-+...+..
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ek 1132 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEK 1132 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Confidence 4566777889999999999999999999988888776665555554443
No 377
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.53 E-value=1.5e+02 Score=28.61 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHH-HHHHHHhCCCHHHHHHHHHHHHhCCCCCChh--
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEK----GLFPNVVTYNA-LIDGYCKEGLMEAALQILDLMKSNNCSPNAR-- 414 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-- 414 (730)
....+..+...|++.++.+.+.+.+.+..+. |.+.|+....+ |.-.|....-+++-++..+.|.++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3556777888888888888887777665543 55555433222 2223344444566777777777776543321
Q ss_pred --cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 415 --TYNELICGFCKRKNVHRAMSLLNELLEQ 442 (730)
Q Consensus 415 --~~~~li~~~~~~~~~~~A~~~~~~~~~~ 442 (730)
+|..+- +....++.+|-.++.+.+..
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 222221 12234566666666655543
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.28 E-value=1.4e+02 Score=28.10 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=58.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYT-YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVY-TYTILIEEVLKEGDFD 605 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~ 605 (730)
|....+++.|+..+.+.+..+ |+..+ |..=+-.+.+..+++.+..=-...++. .||.+ ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 444556666776666665543 55433 334444555666666665555555443 34432 2334445555666677
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 606 HAHRLLDQMVS----LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 606 ~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
+|+..+.+..+ ..+.+....+..|..+-.+.=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777666643 22333333445554443333333444444443
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.20 E-value=18 Score=37.34 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTY-TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
..+...+.++.|..++.++++.. ||-..| ..-..++.+.+++..|+.=+.++++..+. -...|..-..++.+.+++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 33445667777777777777653 544333 23336666777777777777777665321 233344444555666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
.+|...|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 777777766665 456655554444433
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.19 E-value=18 Score=20.26 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=7.3
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m 649 (730)
..+...|++++|...+++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 9 NAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3333333344444333333
No 381
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.14 E-value=1.2e+02 Score=29.18 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGLKPDVYTYT-AFIQAYCSIGKLDEAEDLIVKMNREGIVPD---- 657 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---- 657 (730)
-...+..+...|++.++.+.+.+..++..+ .|.+-|....- .|.-.|....-.++-++..+.|.++|-.-+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356677788889999998888877766554 45555543221 223334444446777888888888874332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004791 658 SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~ 707 (730)
..+|..+. +....++.+|-.++-+.+..=-......|...+.-..-.|
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 23333322 3334567788877777664311223344665555444444
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.09 E-value=27 Score=26.13 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=28.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhcCChhHHHHH
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVP-NIY-TFNTMINGCCKVGNVGEAELY 225 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~ll~~~~~~g~~~~A~~~ 225 (730)
..+..+.|+..+..+++.-..+ +.+ ++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777653332 222 555666777777777766554
No 383
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.92 E-value=2.2e+02 Score=29.83 Aligned_cols=14 Identities=0% Similarity=-0.052 Sum_probs=6.6
Q ss_pred HHHHHHhcCCHHHH
Q 004791 349 LIDCLCKENKVDEA 362 (730)
Q Consensus 349 li~~~~~~g~~~~A 362 (730)
.++..+..|+.+-+
T Consensus 138 pLh~A~~~~~~~~v 151 (413)
T PHA02875 138 PLHLAVMMGDIKGI 151 (413)
T ss_pred HHHHHHHcCCHHHH
Confidence 34444455555433
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.91 E-value=6.1 Score=38.65 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=47.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
..|.+++|++.|...++.. ++....|..-...+.+.+....|++=++...+.+.. ...-|-.-..+....|+|++|.+
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3455666666666665554 444555555555556666666666665555553221 12223333334444566666666
Q ss_pred HHHHHHHCCCCCC
Q 004791 645 LIVKMNREGIVPD 657 (730)
Q Consensus 645 ~~~~m~~~g~~~~ 657 (730)
.+....+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6666665554433
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.67 E-value=1.5e+02 Score=27.74 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 604 FDHAHRLLDQMVSLGLKP-----DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
+..|.+.|.+..+..-.| +....-.++....+.|+.++|.++|.++...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344566666665532221 23334455566778888888888888888654
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.66 E-value=2.2e+02 Score=29.80 Aligned_cols=201 Identities=11% Similarity=0.016 Sum_probs=98.0
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHhchh
Q 004791 191 YLEMLDNMVVPNIYT--FNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF--TYTSLILGYCRNKDVEKGFRVFMMMPK 266 (730)
Q Consensus 191 ~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (730)
.+.+++.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..+++.-..
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~ 93 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCc
Confidence 344445666665432 334555666677765 344445566554432 122345566678888887776654321
Q ss_pred CCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 004791 267 KGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRT--YTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVH 344 (730)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 344 (730)
..-..+.. -.+.+...+..|+.+-+.. +.+.|..|+... -.+.+...+..|+.+-... +.+.|..++..
T Consensus 94 ~~~~~~~~-g~tpL~~A~~~~~~~iv~~----Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~~~ 164 (413)
T PHA02875 94 ADDVFYKD-GMTPLHLATILKKLDIMKL----LIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLDIE 164 (413)
T ss_pred ccccccCC-CCCHHHHHHHhCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCCCC
Confidence 10001111 1234445556677654443 344454443321 1234445556777654433 34445443321
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 004791 345 --TYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVT---YNALIDGYCKEGLMEAALQILDLMKSNNCSPN 412 (730)
Q Consensus 345 --~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 412 (730)
.-.+.+...+..|+.+ +.+.+++.|..++... ..+++...+..|+.+ +.+.+.+.|..++
T Consensus 165 d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 165 DCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 1123344455667754 4444566666555332 124555455666654 3444445665554
No 387
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.41 E-value=2.3e+02 Score=29.84 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
+.+..|..+++-+|++++|..++...
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~a 645 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHA 645 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34566778888889999998888443
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.03 E-value=22 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 657 DSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
|..-.-.++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455666666666666666666554
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.13 E-value=31 Score=25.85 Aligned_cols=46 Identities=13% Similarity=-0.052 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAFDV 680 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 680 (730)
...+.++|+..|++..+.-..+. -.++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554321111 22334444555555555555443
No 390
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.50 E-value=2e+02 Score=28.53 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCCh----h
Q 004791 344 HTYTVLIDCLCKENKVDEASELLNRMLEK----GLFPNVVTYNALIDG-YCKEGLMEAALQILDLMKSNNCSPNA----R 414 (730)
Q Consensus 344 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~----~ 414 (730)
..+......||+-|+.+.|.+.+.+..++ |.+.|+..+..-+.. |....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34556667778888877777776665443 556665555443322 22223334444444455555533322 1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 415 TYNELICGFCKRKNVHRAMSLLNELLE 441 (730)
Q Consensus 415 ~~~~li~~~~~~~~~~~A~~~~~~~~~ 441 (730)
+|..+- +....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 222222 1223455666666655543
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.86 E-value=1.9e+02 Score=29.97 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSY--TYNALIDGLY--RERKVQEALLLVEKMTKM 582 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~--~~~~~~~A~~~~~~m~~~ 582 (730)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999998886 445444 4455555554 577888999999887764
No 392
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.79 E-value=3.8e+02 Score=31.66 Aligned_cols=232 Identities=13% Similarity=-0.003 Sum_probs=103.5
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 525 (730)
++..+-..-+..+.+.+. +++...+..+.+ .++...-...+.++.+.+........+..+.+. ++..+....+
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 455555555555555554 334444444443 234444444444444332211112222233322 2445555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
.++...+..+ .. .+-..+. .+|...-...+.++.+.+..+. +..+.. .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 5555433211 11 2222222 2444444445555554443321 112221 344555555555555555433
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 606 H-AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 606 ~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
. +...+..+.+ .+|...-...+.++...|..+.+...+..+.+ .+|..+-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 2344444433 34555556666666666655444444444443 2344444445555555554 3455555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHcC
Q 004791 685 FDAGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 685 ~~~g~~p~~~~~~~l~~~l~~~ 706 (730)
++ .|+...-...+.+|.+.
T Consensus 847 L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred hc---CCCHHHHHHHHHHHhcc
Confidence 53 45555555666666554
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.43 E-value=1e+02 Score=28.93 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=80.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTV-YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY-TYTAFIQAYCSIGKL 639 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 639 (730)
-|....++..|+..|.+.+.. .|+. .-|..-+.++.+..+++.+.+--.+.++. .||.. ....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 355667888999988877765 4666 44566777888899999998888888774 55544 344555666777789
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNR----EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 640 ~~A~~~~~~m~~----~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
++|+..+++... ..+.+-...+..|..+--+.=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999999988853 234444556666665544444445555555554
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.36 E-value=1.2e+02 Score=25.59 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|.-++.+.+++++++++.+.+++
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33345555555555555555544
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.72 E-value=48 Score=22.10 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004791 669 AHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIK 701 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 701 (730)
.+.|...++..++++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344556666666666666666666666655543
No 396
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=2e+02 Score=27.58 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=111.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR-ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
.+.+..+-..|+++.+..+..+ +.+-.+|+.--..+.. ..+..+-++.++++++.. +.|-..|..--......|+..
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcc
Confidence 3456777888999999888865 3344444332222222 235777788888888765 567777765555555667777
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC-----CHHHHH
Q 004791 606 -HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH-LG-----LIYSAF 678 (730)
Q Consensus 606 -~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g-----~~~~A~ 678 (730)
.-+++.+.|+..+-+ +-..|..--.++..-+.++.-+.+..+|++.++. |..+|+.-.-.... .| ..+.-+
T Consensus 130 ~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred cchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHH
Confidence 778888999875433 7778888888888888899999999999987754 44556542211111 22 233444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004791 679 DVLKRMFDAGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 679 ~~~~~m~~~g~~p~~~~~~~l~~~l~~ 705 (730)
.+..+++. +.|+..+-...+.++..
T Consensus 208 ~yt~~~I~--~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 208 NYTKDKIL--LVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHHHH--hCCCCccHHHHHHHHHH
Confidence 55666666 46666555555555554
No 397
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.13 E-value=1.6e+02 Score=29.19 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH-HH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKM---GVKPTVYTYT--ILIEEVLKEGDFDHAHRLLDQMVS-----LGLKPDVY-TY 626 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~-~~ 626 (730)
.++...-+.++.++|+++++++.+. .-.|+.+.|. .+..++...|+.+++.+.+++..+ .++.|++. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3344445566888888888887742 2245665553 345566677888888888877776 45555443 24
Q ss_pred HHHHHHHH
Q 004791 627 TAFIQAYC 634 (730)
Q Consensus 627 ~~l~~~~~ 634 (730)
..+..-|.
T Consensus 160 Y~lssqYy 167 (380)
T KOG2908|consen 160 YSLSSQYY 167 (380)
T ss_pred HHHHHHHH
Confidence 44444443
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.73 E-value=2.1e+02 Score=27.85 Aligned_cols=113 Identities=6% Similarity=0.093 Sum_probs=60.6
Q ss_pred ChhHHHHHHHhchh-CCCCcChhhHHHHHHHHHh-cC-CHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 253 DVEKGFRVFMMMPK-KGCRRNEVSYTNLIHGLCE-AK-RVDEALDLFRRMGED-DCRPTVRTYTVVIFGLCRVGRKSEAL 328 (730)
Q Consensus 253 ~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (730)
.+.+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 1233455555555554443 11 222222233333222 23456666667777777777777777
Q ss_pred HHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 329 EFFNEMSAR-GCEPNVHTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 329 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 365 (730)
++++..... ++.-|...|..+|+...+.|+..-...+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 777666554 4555677777777777777776544333
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.19 E-value=1.1e+02 Score=24.52 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 219 VGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRR 298 (730)
Q Consensus 219 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (730)
.+||..+.+.+...+.. ...+--+-+..+...|+|++|+..=.. ...||...|.+|.. .+.|--+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~----~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQC----HCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTT----S--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhccc----CCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 44555555555544321 122222233445566666666221111 11256666654432 456666666666666
Q ss_pred HhhCC
Q 004791 299 MGEDD 303 (730)
Q Consensus 299 m~~~~ 303 (730)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 65544
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.02 E-value=28 Score=36.07 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=73.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTY-NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
...+.+.+.++.|..++.++++.+ ||-..| ..=..++.+.+++..|+.=..++++.. +.-...|.--..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 455667888999999999999875 544443 333377788899999988888888765 2233444445566777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
+.+|+..|+.... +.|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 8888888888776 4666655555555543
No 401
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.42 E-value=2.7e+02 Score=28.56 Aligned_cols=152 Identities=15% Similarity=0.057 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCC------------HHhHHHHHHHHHhcCCHHHHHHHHHHHH---------------------
Q 004791 464 LDSAYKVLHLINESGLVPD------------QFTYSVFIDTLCKRGRVEEAQVLFDSLE--------------------- 510 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------------- 510 (730)
+.++...|......+ .|+ ..++-.+-..+...|+.+.|.+++++.+
T Consensus 10 Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ----HcCCCcCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 004791 511 ----KKGIKAGEVIYTAL---IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY-RERKVQEALLLVEKMTKM 582 (730)
Q Consensus 511 ----~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~ 582 (730)
.-...-|...|.++ +..+.+.|.+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++.+.....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred CCCC----CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHH
Q 004791 583 GVKP----TVYTYTILIEEVLKEGDF---------------DHAHRLLDQMVS 616 (730)
Q Consensus 583 ~~~~----~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~ 616 (730)
..+. -+...-+..-++...++. ++|.+.+.+++.
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.99 E-value=99 Score=23.79 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=7.4
Q ss_pred hcCCHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMN 650 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~ 650 (730)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3344444444444444
No 403
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=52.86 E-value=1.4e+02 Score=25.06 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=26.0
Q ss_pred CChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcc
Q 004791 87 LNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSC 139 (730)
Q Consensus 87 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~ 139 (730)
.+|..|..++.+....+ -+...++.+......-.+.++...+....
T Consensus 3 nNp~IA~~~l~~l~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~~~~ 48 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP-------NFKEYLDVLVSMDMSLHSMEVVNRLTTSF 48 (126)
T ss_pred CcHHHHHHHHHHHcCCc-------hHHHHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 56777777776665433 14555666666555555555555555433
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.73 E-value=14 Score=30.89 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=17.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004791 669 AHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIK 701 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 701 (730)
.+.|.-.+|..+|++|++.|-.||. |..|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3445555666666666666666654 554443
No 405
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.52 E-value=19 Score=35.37 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=78.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 606 (730)
....|.+++|++.|...+..+ ++....|.--.+.+.+.++...|++=++..++.+ || ..-|-.-..+..-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 345677888888888887775 5566666666777778888888888777777653 43 3334444455556788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
|...|....+.++.+....| +=...-..+..++-...+++..+.
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 88888888887665544333 333344455555555555555543
No 406
>PRK10941 hypothetical protein; Provisional
Probab=51.45 E-value=2.2e+02 Score=27.65 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--+-.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33444555555555555555555543 33344444444445555555555555555544
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.25 E-value=99 Score=24.19 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455566777777777766654
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.21 E-value=1.3e+02 Score=24.24 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILD 402 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (730)
..++|..+.+.+...+.. ...+--.-+..+.+.|++++| +..-. ....||...|-+|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 455666666655554321 222223333445556666666 11111 11234555554433 235555555555555
Q ss_pred HHHhCC
Q 004791 403 LMKSNN 408 (730)
Q Consensus 403 ~m~~~~ 408 (730)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555443
No 409
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.00 E-value=2.7e+02 Score=27.80 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=37.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGV---KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
..-|.+..++..|...|.+-++... ..+.+.|+.-..+-...|++..|+.=....+...+. ....|..=..++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHH
Confidence 3344455555555555555443221 112344444444444455555555544444443211 222222223333444
Q ss_pred CCHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKM 649 (730)
Q Consensus 637 g~~~~A~~~~~~m 649 (730)
.++++|..+.++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444443
No 410
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.62 E-value=1.1e+02 Score=25.39 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
..+-++.+...++.|+..+...-++++.+..++..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555566666666677777777777777777777666643
No 411
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.30 E-value=1.6e+02 Score=24.91 Aligned_cols=66 Identities=5% Similarity=0.001 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 586 PTVYTYTILIEEVLKEG---DFDHAHRLLDQMVSLG-LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
++..+--.+..++.+.. +..+.+.+++++.+.. ..-.......|.-++.+.|+++.++++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444444555555444 3455666677666521 111233333444566677777777777777766
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.12 E-value=22 Score=29.79 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=20.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING 212 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 212 (730)
+.|.-.+|..+|.+|++.|-.||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345666777777777777777764 6666544
No 413
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.68 E-value=4.7e+02 Score=29.98 Aligned_cols=101 Identities=11% Similarity=-0.016 Sum_probs=57.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcC
Q 004791 208 TMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAK 287 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 287 (730)
++|.-+.+.|..+-|+.+.+.-..+ .......|+++.|++.-..+ .|..+|..|+......|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 3444555667666666654432211 11234567777777766554 34567777877777788
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMS 335 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (730)
+.+-|...|++.+.- ..|--.|.-.|+.++-.++.+...
T Consensus 687 n~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred chHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHH
Confidence 887777777776542 222223444566665555544443
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.55 E-value=45 Score=23.70 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
-.-.-.++.+|...|++++|.++++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344556667777777777777666654
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.56 E-value=1.4e+02 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55556666666666666666655544
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.26 E-value=1.1e+02 Score=24.78 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 311 YTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
|..++..|...|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 417
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.80 E-value=4.1e+02 Score=28.72 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=37.8
Q ss_pred CCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHccc
Q 004791 86 DLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCS 140 (730)
Q Consensus 86 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~ 140 (730)
.-+.+.-..++..+..+.+..++..++..+.+. ..|..+++..++..++..+.
T Consensus 177 ri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 177 RLDLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccC
Confidence 345566677778888888888888777666543 46778888888888876543
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.68 E-value=57 Score=29.84 Aligned_cols=32 Identities=31% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 655 VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666655554
No 419
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.18 E-value=2.6e+02 Score=26.33 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=14.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 004791 564 YRERKVQEALLLVEKMTKMGV 584 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~ 584 (730)
...+++.+|+.+|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356677777887777766443
No 420
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.13 E-value=79 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 34455666666666666666666 3454
No 421
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.03 E-value=3.1e+02 Score=27.20 Aligned_cols=152 Identities=17% Similarity=0.093 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC
Q 004791 548 DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK-MGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGLKPD 622 (730)
Q Consensus 548 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 622 (730)
.+..|...++.|..+- ..+.++--+..+...+ .|-.--...+......||+.|+.+.|.+.+++..+ .|.+-|
T Consensus 65 ~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 3445666666665442 2223333333333333 22222345566677889999999999988876654 566767
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 623 VYTYTAFI-QAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 623 ~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
...+..-+ -.|....-..+-++-.+.+.++|-.-+ ..+|..+- |....++.+|-.+|-+.+..=-.-...+|.
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~ 220 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYE 220 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHH
Confidence 76554333 234444446666677777777774433 34454442 444577888888887775321123345566
Q ss_pred HHHHHH
Q 004791 698 FLIKHL 703 (730)
Q Consensus 698 ~l~~~l 703 (730)
.++.--
T Consensus 221 ~~v~Yt 226 (393)
T KOG0687|consen 221 TFVRYT 226 (393)
T ss_pred HHHHHH
Confidence 665443
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.86 E-value=87 Score=24.50 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=40.4
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNRE----GIVP----DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC-EPSHHTYAFLIKHL 703 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~----g~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~l 703 (730)
.+.|++.+|.+.+.+..+. +... -......+...+...|+.++|+..+++.++.-- .-|..+....+..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4567777776666555432 2111 022334456677889999999999999874211 33444444433333
No 423
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=45.48 E-value=5.7e+02 Score=30.10 Aligned_cols=345 Identities=12% Similarity=0.101 Sum_probs=158.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-------HHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhH
Q 004791 277 TNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTV-------VIFGLCRVG---RKSEALEFFNEMSARGCEPNVHTY 346 (730)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 346 (730)
.++=+++...+.++.|...|+++... ++.-...|.+ ++.--...| .+++|+.-|+.+... .--+--|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 555 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEY 555 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHH
Confidence 34556778888899999999998764 2222222322 222222233 366777777776543 1123345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 004791 347 TVLIDCLCKENKVDEASELLNRMLEKG-LFPNVVTY-NALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFC 424 (730)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 424 (730)
-.-+-.|-+.|++++-.+.+.-..++- -.|-..-. ..+ ..++.+..... ...+|.-++-+..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~~ 619 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL------------VYRLHESLYKH----RREALVFMLLALW 619 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 555566778888877777766665541 11211110 000 11122222211 1222222222211
Q ss_pred ---hcCCHHHHHHHHHHHHHCCCCCC--------hhh-----HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 004791 425 ---KRKNVHRAMSLLNELLEQNLSPT--------LIT-----YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSV 488 (730)
Q Consensus 425 ---~~~~~~~A~~~~~~~~~~~~~~~--------~~~-----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 488 (730)
+.-...+-.++|+.+..+ ..+. +.+ +..++..+ .|..---.+++++..+. +|..+...
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~ 693 (932)
T PRK13184 620 IAPEKISSREEEKFLEILYHK-QQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRALAD 693 (932)
T ss_pred hCcccccchHHHHHHHHHHhh-ccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHHHH
Confidence 111222334444444332 1111 111 11222211 23333334455554442 34444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEKK----GIKAGE--------VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY-- 554 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 554 (730)
+.-..+..|.++-+.+..+.+.+. ....+. ..|-.-+.++.....++++...+... +|...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 768 (932)
T PRK13184 694 IFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILY 768 (932)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHH
Confidence 555557788887777666655532 111011 11222244555555666666544332 22222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA 632 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 632 (730)
.+..++.-..-.++.+.-..+.+.+.+.-.+.. .......+.+|.-..++++|-++++..-..-...|. ...-.+.+
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 847 (932)
T PRK13184 769 AFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEY-SEAFVLYG 847 (932)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhcccc-chHHHHHH
Confidence 233333333334444444444444443321111 223345677788888888888888665443222122 22222222
Q ss_pred --HHhcCCHHHHHHHHHHHHHC
Q 004791 633 --YCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 633 --~~~~g~~~~A~~~~~~m~~~ 652 (730)
+.-.++.+-|..-|....+.
T Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~ 869 (932)
T PRK13184 848 CYLALTEDREAAKAHFSGCRED 869 (932)
T ss_pred HHHHhcCchhHHHHHHhhcccc
Confidence 24556667777777766643
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.00 E-value=2.6e+02 Score=26.21 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=8.9
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004791 596 EEVLKEGDFDHAHRLLDQM 614 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~ 614 (730)
......|++++|++..+++
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3344445555555444444
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.87 E-value=4.8e+02 Score=30.97 Aligned_cols=84 Identities=8% Similarity=0.005 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCC---CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKG---CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
.|-.+++.+-+.+-.+.+.++-...++.- .+--..+++.+.+-....|.+-+|.+.+-+-... ..-.....-++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHH
Confidence 34555666666666666666655544421 1111334566666666667666666654332111 011123344455
Q ss_pred HHHhcCCHH
Q 004791 317 GLCRVGRKS 325 (730)
Q Consensus 317 ~~~~~g~~~ 325 (730)
.++.+|.++
T Consensus 1063 vLfecg~l~ 1071 (1480)
T KOG4521|consen 1063 VLFECGELE 1071 (1480)
T ss_pred HHHhccchH
Confidence 555555543
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.61 E-value=41 Score=24.21 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~ 707 (730)
|....++.++..+++..-.++++.++.++.+.|. .+..+|..-++.|++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 4455666777777776667777777777777664 45666766666666543
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.55 E-value=1.9e+02 Score=24.24 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 641 EAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
++.++|+.|..+|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776665443 55666666667777777777777664
No 428
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.18 E-value=2.5e+02 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=15.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 453 SLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 453 ~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
+++..|.+..++.++.++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777666553
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.07 E-value=92 Score=29.60 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC-SIGKLDEAEDLIVKMN 650 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 650 (730)
++..+-+.|+++++.++++++...+...+..--+.+..+|- .-|....+++.+..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 44455556666666666666666555555555555555552 2344444555554444
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.85 E-value=3.3e+02 Score=26.91 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTY--TAFIQAYCSIGKLDEA 642 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A 642 (730)
...-..+|.++|++..+.+ ..+|+ --..+...|...+ .+.+.+ .++.+| ..|.-+-.+.|+..+|
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~~~~~d------a~~rRD--tnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYR-QSQQCQHQSPQHE------AQLRRD--TNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHh-hHHHHhhhccchh------hhhhcc--cchhhHHHHHHHHHHHHhhhHHHH
Confidence 3445677888888887654 12232 1112222222222 222222 234444 3555566789999999
Q ss_pred HHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 643 EDLIVKMNREGIVPD---SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+.++.+.+.- |= ......|+.++....-+.+...++-+--+
T Consensus 295 ~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 295 VKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999887642 31 22345677888777666666666555443
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.18 E-value=1.6e+02 Score=26.54 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=11.1
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555554
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.14 E-value=1.5e+02 Score=22.80 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
+.++++.+.+.|+ -+..-...+-.+-...|+.+.|.++++.+. .|. + .|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~--~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE--G--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC--c--HHHHHHHHHHHcCchhhhh
Confidence 3455555555553 222222222222234577778888887776 432 2 4667777777777655554
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.97 E-value=55 Score=29.90 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=47.9
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCS 140 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~ 140 (730)
...|++....+.+|+.+--...|++.+|..++.++...|+.++|.+...++...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55677777788888887666789999999999999999999999999988877665
No 434
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.82 E-value=2.6e+02 Score=25.39 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=9.9
Q ss_pred hCCCHHHHHHHHHHHHh
Q 004791 390 KEGLMEAALQILDLMKS 406 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~ 406 (730)
+.|+++.|.++++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44566666666665554
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.63 E-value=1e+02 Score=20.55 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=19.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 35566666666666666666666655555443
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.60 E-value=5.4e+02 Score=28.94 Aligned_cols=116 Identities=8% Similarity=-0.009 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 322 GRKSEALEFFNEMSARG-CEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 322 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
.+.+.|..++....... ..+. ..++..++......+...+|...++...... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 44566666666653332 1111 1223333333333322455555555543321 13333444444555677777777
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 399 QILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
..+..|.... .-...-..-+..++...|+.++|...|+++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777665432 1233334445556556677777777777763
No 437
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.46 E-value=3.1e+02 Score=25.84 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
....-+..|.+.-++.-|....+++.+ | ..+- +.+--|.+..+.+--.++.+-....+++-+......++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 344556677777777777766666653 2 2222 22333444444443444444444445555554454444 34
Q ss_pred HcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 600 KEGDFDHAHRLLDQMVSL-G-----------LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
..|+..+|+..++.-... | -.|.+.....++..| ..+++++|.+.+.++.+.|+.|..
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 689999998888876641 1 134555555566554 346788888888888888877643
No 438
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.17 E-value=7.2e+02 Score=29.68 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
.+.|...+++|...-..++...+..+..+|
T Consensus 573 I~gae~~irkMl~LVWskd~~i~e~v~~ay 602 (1251)
T KOG0414|consen 573 IDGAEFGIRKMLPLVWSKDKEIREAVENAY 602 (1251)
T ss_pred CCcHHHHHHHHhhhhhCCCccHHHHHHHHH
Confidence 344444444444433333333444444443
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.80 E-value=5.9e+02 Score=28.62 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=65.3
Q ss_pred CCChhHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHH
Q 004791 461 EGHLDSAYKVLHLINESG-LVPD--QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDA 537 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 537 (730)
..+.+.|...+....... +.+. ...+..+.......+..+++...++....... +......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHH
Confidence 445688888888764432 2222 12233333333333335566666665543322 333344444455578888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
...+..|..... -...-.-=+..++...|+.++|...|+++..
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888754321 1222222245555667999999999988743
No 440
>PRK10941 hypothetical protein; Provisional
Probab=39.41 E-value=3.7e+02 Score=26.16 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+.+-.+|.+.++++.|+.+.+.++...+. |..-+.--+-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34555677777777777777777775432 5555666666677777777777777777654
No 441
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=39.21 E-value=1.7e+02 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 004791 637 GKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~ 654 (730)
|+++++...+.++...|+
T Consensus 18 ~~~~~~~~~~~~l~~~G~ 35 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEGY 35 (89)
T ss_dssp TCHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 355555555555555443
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.76 E-value=2e+02 Score=27.54 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAEDLIVKMNR----EGI-VPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
..+...|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+--+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455566666777777777666642 121 122344455555666666666666554444
No 443
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.40 E-value=3.7e+02 Score=27.03 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNREGIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
.+++..++..++.. .|+ ...|.+++......|.+++.+.+|++.+..|-.|=...-..+++.|.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666666653 344 34566677777777777777777777777777776666666666655
No 444
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.29 E-value=6.5e+02 Score=28.66 Aligned_cols=80 Identities=6% Similarity=0.025 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH---hcCChhHHHHHHHhchhCCCCcChhhHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYC---RNKDVEKGFRVFMMMPKKGCRRNEVSYTN 278 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 278 (730)
+...+..||..+.+.|++++-..--..|... .+.+...|-..+.... ..+...++..+|++..... .++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 5556778888888888888777776677664 2345566655554332 3466667777777666533 34445555
Q ss_pred HHHHHH
Q 004791 279 LIHGLC 284 (730)
Q Consensus 279 li~~~~ 284 (730)
.+..+.
T Consensus 189 ~~~y~~ 194 (881)
T KOG0128|consen 189 VVNYLV 194 (881)
T ss_pred HHHHHH
Confidence 554444
No 445
>PRK09857 putative transposase; Provisional
Probab=38.28 E-value=2.1e+02 Score=28.23 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
...|+.++..++++.+.+. .+.......++..-+...|..++++++.++|+..|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555555543 222333334555555666666677777777777776655
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.81 E-value=4.8e+02 Score=26.99 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHh--cCChhHHHHHHHHHHhC
Q 004791 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEV--IYTALIDGYCK--EGKIDDAHSLLERMLSD 547 (730)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 547 (730)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 444443 45556666654 66788999999988764
No 447
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.30 E-value=6.9e+02 Score=28.66 Aligned_cols=97 Identities=10% Similarity=-0.066 Sum_probs=45.6
Q ss_pred hHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHh
Q 004791 91 TALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKG 170 (730)
Q Consensus 91 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (730)
...+.+.+.....+...+......+++. ..|..+.|..++.+.+......-.. +.+..|. | ..+...
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~----~~V~~~L------G-~~d~~~ 248 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTE----TAVSGML------G-ALDQTY 248 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCH----HHHHHHh------C-CCCHHH
Confidence 3344444444444444444444333332 2466666766666555322111011 1111111 0 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP 201 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (730)
...++..+.. ++..+++.+++++...|...
T Consensus 249 i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 249 MVRLLDALAA-GDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 4455554433 77777888888777766543
No 448
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.98 E-value=4.6e+02 Score=26.26 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSD---DCLPNSYTYN--ALIDGLYRERKVQEALLLVEKMTK-----MGVKPTVYT 590 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~ 590 (730)
...++...-+.++.++|++.++++.+. .-.|+.+.|. .+...+...|+..++.+.+++..+ .+++++..+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 334455566778999999999998763 2246666654 445566789999999999998876 677775443
Q ss_pred -HHHHHHHH
Q 004791 591 -YTILIEEV 598 (730)
Q Consensus 591 -~~~l~~~~ 598 (730)
|+.+..-|
T Consensus 158 ~fY~lssqY 166 (380)
T KOG2908|consen 158 SFYSLSSQY 166 (380)
T ss_pred hHHHHHHHH
Confidence 44444433
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.96 E-value=86 Score=17.84 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHH
Q 004791 603 DFDHAHRLLDQMVS 616 (730)
Q Consensus 603 ~~~~A~~~~~~~~~ 616 (730)
+.+.|..+|++++.
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444444444
No 450
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.96 E-value=2.9e+02 Score=23.87 Aligned_cols=81 Identities=10% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREG---I--VPDSVTYTLLICAYAHLGL-IYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
.+.++.-....++....+.+++.+.-.. + ..+...|..+..+.....- .--+..+|+-|.+.+++++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555666666666666654210 0 2245567888887766655 44566778888777788888888888
Q ss_pred HHHHHcC
Q 004791 700 IKHLSNK 706 (730)
Q Consensus 700 ~~~l~~~ 706 (730)
+++..+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887766
No 451
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.86 E-value=4.1e+02 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~ 541 (730)
++.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677778888888888888877655
No 452
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.73 E-value=5.8e+02 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFT 240 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 240 (730)
+......++.+....+....|+.+++++.+.|..|..+.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 444555566665555556678888888888776655443
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.52 E-value=86 Score=30.63 Aligned_cols=29 Identities=38% Similarity=0.583 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
+..|....+.||+++|+.+++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35555555555555555555555555544
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.42 E-value=7.7e+02 Score=28.69 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCChhhHHH--
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT---VRTYTVVIFGLCRVGRK--SEALEFFNEMSARGCEPNVHTYTV-- 348 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~-- 348 (730)
|..|+..|...|+.++|++++.+..+..-.-| ...+.-+++.+.+.+.. +-.+++-++..+.+..-....++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 67788888888888888888888766320001 11223344444444444 444444444444322211111111
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 349 ----------LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK 390 (730)
Q Consensus 349 ----------li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 390 (730)
.+-.|.+....+-+...++.+....-.++....+.++..|++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 222344555666666777776665444556666666666654
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.35 E-value=2.7e+02 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.008 Sum_probs=7.0
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 004791 313 VVIFGLCRVGRKSEALEFF 331 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~ 331 (730)
.-...+...|++++|.++|
T Consensus 104 ~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 104 EWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3333333334444444333
No 456
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.26 E-value=4.2e+02 Score=25.61 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=43.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 004791 236 PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVI 315 (730)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 315 (730)
-|+.....+...|.+.|++.+|...|-.-.. ++...+..++..+...|...++ |...-.++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV- 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV- 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH-
Confidence 3566677778888888888888877744333 3343333334333333333322 12222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004791 316 FGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
-.|.-.|+...|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 2344567788887777666544
No 457
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.73 E-value=40 Score=37.03 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=7.8
Q ss_pred CChhhHHHHHHhhh
Q 004791 87 LNPQTALDFSYWIS 100 (730)
Q Consensus 87 ~~~~~al~~f~~~~ 100 (730)
.+|+...+=|.|..
T Consensus 620 ~k~e~~Mrr~nW~k 633 (1102)
T KOG1924|consen 620 YKPEVPMRRFNWSK 633 (1102)
T ss_pred CCCCCccccCCccc
Confidence 34555555666654
No 458
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.69 E-value=7.1e+02 Score=28.02 Aligned_cols=27 Identities=15% Similarity=0.490 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 346 YTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 346 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
|..+.++|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 444556666667777777777776663
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.52 E-value=2.5e+02 Score=30.75 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDD--CLPNSYTYNALIDGLYRERKVQ------EALLLVEKMTKMGVKPTVYTYTIL 594 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~------~A~~~~~~m~~~~~~~~~~~~~~l 594 (730)
.|..+|...|++..+..+++.+...+ -..-...+|..+....+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888899999999999888887643 1223456777788888888654 3444444433 45577788777
Q ss_pred HHHHHH
Q 004791 595 IEEVLK 600 (730)
Q Consensus 595 ~~~~~~ 600 (730)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.29 E-value=4.8e+02 Score=27.12 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC--C-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 275 SYTNLIHGLCEAKRVDEALDLFRRMGED--D-----CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMS 335 (730)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (730)
+...|++.++-.|++..|+++++.+.-. + ..-.+.+|-.+.-+|...+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777777766554211 0 11123345555555666666666666665543
No 461
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.11 E-value=3.1e+02 Score=23.68 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGL-----KPDVYTYTAFIQAYCSIGK-LDEAEDLIVKMNREGIVPDSVTYTLL 664 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l 664 (730)
.+.++......+++.-...+++.+..... ..+...|.+++.+.....- .--+..+|.-|++.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555555555566555555555532100 1245567888887766555 44567788888887778888888888
Q ss_pred HHHHHhc
Q 004791 665 ICAYAHL 671 (730)
Q Consensus 665 ~~~~~~~ 671 (730)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8877653
No 462
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.08 E-value=2.2e+02 Score=22.07 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
|...-..+...+...|++++|++.+-++++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555666666666666666666666654
No 463
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.20 E-value=4.5e+02 Score=25.33 Aligned_cols=128 Identities=7% Similarity=0.012 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK-EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ-EAL 573 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~A~ 573 (730)
....+.|+++-.+++..++. +-.+|+---..+.. ..++.+-++.++++.+.+ +.|-..|.---......|++. .-+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 34445566666666655332 22222111111111 123455566666666554 445555543322333344554 556
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 574 LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYT 627 (730)
Q Consensus 574 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 627 (730)
++.+.|+... ..+-..|..--.++..-+.++.-+.+..++++.++. +...||
T Consensus 134 ef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN 185 (318)
T KOG0530|consen 134 EFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWN 185 (318)
T ss_pred HHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhh
Confidence 6666666533 345555555555555566677777777777765544 333444
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.95 E-value=1.3e+03 Score=30.38 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+|-...+.....|+++.|...+-.+.+.+ . +..+--....+...|+...|+.++++.++
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44455555555555555555544444433 1 22333344445555555555555555554
No 465
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.15 E-value=4.2e+02 Score=25.03 Aligned_cols=132 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----------HHHHHHHHHHHHhcCCH--HH
Q 004791 575 LVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-PD----------VYTYTAFIQAYCSIGKL--DE 641 (730)
Q Consensus 575 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----------~~~~~~l~~~~~~~g~~--~~ 641 (730)
..+..++.|-.-...++..++-.+...|+++.|+++.+.+++.|.. |+ ............+.|+. -.
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~ 149 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY 149 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHH---------HhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHc
Q 004791 642 AEDLIVKMNREGIVPD---SVTYTLLICAY---------AHLGLIYSAFDVLKRMF----DAGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~---~~~~~~l~~~~---------~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l~~~l~~ 705 (730)
-...+..+...-=-|| ...|..++..+ ...++...|..++++.. +.|++.+..-....|+.+.+
T Consensus 150 ~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~~~ 229 (230)
T PHA02537 150 FLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKALAE 229 (230)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccc
Q ss_pred C
Q 004791 706 K 706 (730)
Q Consensus 706 ~ 706 (730)
.
T Consensus 230 ~ 230 (230)
T PHA02537 230 S 230 (230)
T ss_pred C
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.98 E-value=2.2e+02 Score=27.33 Aligned_cols=22 Identities=14% Similarity=0.204 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 004791 345 TYTVLIDCLCKENKVDEASELL 366 (730)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~ 366 (730)
+...+..++.+.|+.+....+.
T Consensus 220 ~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 220 VLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 3344444445555555444443
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.97 E-value=2.9e+02 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=16.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~ 231 (730)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 44567777888888888777766
No 468
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.88 E-value=2.3e+02 Score=27.78 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 573 LLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 573 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.++|+.+.+.++.|.-..+..+--.+.+.=.+.+.+.+|+.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 34666666666777777776666666666677777777777654 2333555555554
No 469
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.81 E-value=4.4e+02 Score=24.74 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP---DVYTY--TAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
.++..-+|.|+--|.-...+.+|.+.|.+-. |+.| |..++ ..-|......|+.++|++....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 4555556666555555555555655554433 3333 33333 345667789999999999988876433334432
Q ss_pred HHHHH--HH--HHHhcCCHHHHHHHHHHHH
Q 004791 660 TYTLL--IC--AYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 660 ~~~~l--~~--~~~~~g~~~~A~~~~~~m~ 685 (730)
.+-.| .. =..+.|..++|+++.+.-+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222 11 2467788999999887655
No 470
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=4.6e+02 Score=24.96 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+..+..++...|++-++++.-.+..... +-+..+|-.-..+.+..=+.++|..=|.+.++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34445556667777777777777777643 33566666666666666677777777777765
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.92 E-value=2.3e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChhh
Q 004791 645 LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDE 710 (730)
Q Consensus 645 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~e 710 (730)
+.+.+.+.|+++... -..++..+...+..-.|.++++++.+.|..-+..|-..-++.|...|...
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344455556555432 22344555555555677777777776666666666555556666665443
No 472
>PRK09857 putative transposase; Provisional
Probab=30.50 E-value=4.1e+02 Score=26.29 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
..++......++.++..++++.+.+.. .......-+++.-+...|.-+++.++..+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444445566666666666665542 22333344566666677777778888888888886544
No 473
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=30.41 E-value=6.7e+02 Score=26.43 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=68.2
Q ss_pred hcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 004791 215 KVGNVGEAELYVSKIVQ-AGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEAL 293 (730)
Q Consensus 215 ~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 293 (730)
..|+...|-+-+....+ ..-.|+....-+ ..+...|+++.+...+....+ -+.....+...++....+.|+.++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45666655543333333 222333333322 335566778877777765543 12244556667777777788888888
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 294 DLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 294 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
.+-+-|....+. +..............|-++++.-.++++...+.+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 877777665433 2222222223334456677777777777655433
No 474
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.33 E-value=2.6e+02 Score=21.70 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=13.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
|...-..+...+...|++++|++.+-++++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334444444444445555554444444443
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.81 E-value=2.7e+02 Score=30.56 Aligned_cols=75 Identities=8% Similarity=0.096 Sum_probs=51.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChh------HHHHHHHhchhCCCCcChhhHHHH
Q 004791 208 TMINGCCKVGNVGEAELYVSKIVQAG--LSPDTFTYTSLILGYCRNKDVE------KGFRVFMMMPKKGCRRNEVSYTNL 279 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 279 (730)
+++.+|...|++..+.++++...... -+.-...+|..|+...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999998887642 2222456777788888888764 3444444443 33577777777
Q ss_pred HHHHHh
Q 004791 280 IHGLCE 285 (730)
Q Consensus 280 i~~~~~ 285 (730)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 476
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.55 E-value=5.8e+02 Score=25.41 Aligned_cols=216 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcccChhhHHHHHHHHHHH-hhcCCccccccCHHhHHHHHHHHHhcC-C
Q 004791 108 SVESYSSLLNLLIRNN--FTKASEKIVFLMLKSCSLDKEILFVLDFLRRV-NESGSEFSLKLSVKGYNTLLMQLSKFH-L 183 (730)
Q Consensus 108 ~~~~~~~l~~~l~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 183 (730)
+...|..++..+.... ..+.+.-+-...--.....-+...+++++..+ . ...+...|..++..+.... .
T Consensus 17 d~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~-------~E~~~~vw~~~~~~l~~l~~~ 89 (324)
T PF11838_consen 17 DEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLP-------NETDYVVWSTALSNLSSLRNR 89 (324)
T ss_dssp CTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-G-------T--SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcc-------CCCchHHHHHHHHHHHHHHHH
Q ss_pred hH---HHHHH-HHH---------HHhCCCCCC--HHHHHHHHHHH-HhcCC-----hhHHHHHHHHHHHCCC----CCCH
Q 004791 184 VD---EMKRV-YLE---------MLDNMVVPN--IYTFNTMINGC-CKVGN-----VGEAELYVSKIVQAGL----SPDT 238 (730)
Q Consensus 184 ~~---~a~~~-~~~---------~~~~~~~~~--~~~~~~ll~~~-~~~g~-----~~~A~~~~~~~~~~g~----~~~~ 238 (730)
+. +.... |+. +.+.|..+. .......+... ..... ..+|.+.|......+. ..++
T Consensus 90 l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~ 169 (324)
T PF11838_consen 90 LYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPP 169 (324)
T ss_dssp HCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-H
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccch
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 004791 239 FTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGL 318 (730)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 318 (730)
.....+.....+.|+.+.-..+++..... .+......++.+++-..+.+...++++.....+..++...+..+....
T Consensus 170 dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 170 DLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHh
Q ss_pred -HhcCCHHHHHHHHHH
Q 004791 319 -CRVGRKSEALEFFNE 333 (730)
Q Consensus 319 -~~~g~~~~A~~~~~~ 333 (730)
......+.+.+.+..
T Consensus 247 ~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 247 SSNPVGRDLAWEFFKE 262 (324)
T ss_dssp -CSTTCHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHH
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.48 E-value=6.8e+02 Score=26.23 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 004791 602 GDFDHAHRLLDQMVSLGLKP 621 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p 621 (730)
++.+.|+..+..|++.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444444444444444443
No 478
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.39 E-value=1.1e+02 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
|+..|..-.+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555566666666666666655543
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.87 E-value=8.2e+02 Score=29.57 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=95.6
Q ss_pred HHHHhcCChhHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCHHHHH
Q 004791 526 DGYCKEGKIDDAHS------LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMT-------KMGVKPTVYTYT 592 (730)
Q Consensus 526 ~~~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~-------~~~~~~~~~~~~ 592 (730)
......|.+.+|.+ ++......-.++....|..+...+.+.++.++|+..-.+.. ...-+.+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33445666666666 55543333334556678888888889999999987655432 222223445566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSL-----GL-KPD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-----GI--VPDS 658 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~--~~~~ 658 (730)
.+.-.+...++...|...+.+.... |. .|. ..+++.+-..+...++++.|.++++.+... |. -...
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6665666677888888888777652 22 333 334444444455568899999999888753 21 1135
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
.++..+...+...|++..|....
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Confidence 56666766666667666655543
No 480
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=28.60 E-value=5.3e+02 Score=24.67 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSL-G-LKPDVYTYTAFIQAYC-SIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 651 (730)
+.....+.++++++.+...++.+. + ...+..--+.|-.+|- .-|....+++++..+.+
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ 67 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 67 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHH
Confidence 455566778888888888887764 3 3556666666766663 35667778877777654
No 481
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.52 E-value=6.7e+02 Score=27.62 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS------YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
..|+..-+. .+..++..+.+.|..-+.. ++.|. .....|--+|....+.+.|.++++++.+.. +.+..+--
T Consensus 356 iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQL 432 (872)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHH
Confidence 344443332 3455666666666654432 12222 123445555666777777777777777654 33444445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
.+.......|.-++|+........
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh
Confidence 555666677777777777766654
No 482
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.50 E-value=5.2e+02 Score=30.63 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----HHHHcCCCCCHHHHHH
Q 004791 625 TYTAFIQAYCSIG--KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLK----RMFDAGCEPSHHTYAF 698 (730)
Q Consensus 625 ~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~ 698 (730)
....++.+|.+.+ ++++|+.++.++.+.+-..-..+...|+..--...-++.|+.+|+ .|....-..|+.-|.-
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLP 893 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLP 893 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHH
Confidence 4456666666666 677777777777654211111111111111001111222222221 1222223557788888
Q ss_pred HHHHHHcCChhhhhhhccchhhhHHHHh
Q 004791 699 LIKHLSNKKVDERKQQCDGILFGFKCLI 726 (730)
Q Consensus 699 l~~~l~~~~~~e~~~~~~~~l~~~~~~~ 726 (730)
+++.|.+.....+.-++|.-|.+|..-+
T Consensus 894 fL~~L~~l~~~~rry~ID~hLkRy~kAL 921 (928)
T PF04762_consen 894 FLQELQKLPPLYRRYKIDDHLKRYEKAL 921 (928)
T ss_pred HHHHHHhCChhheeeeHhhhhCCHHHHH
Confidence 8888888766666667777777776544
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.49 E-value=7e+02 Score=25.72 Aligned_cols=128 Identities=13% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE------AKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
..+..+.+.+++..|.++|+++.....++....+-..+..+++ .-++++|.+.++++.......-..+.+.-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh------cCCHHHHHHHHHHHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK------ENKVDEASELLNRMLE 371 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~~~~ 371 (730)
...+....-.+...-.......-. ...++..+.+.+.. .|+++.|...+-+..+
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAK-RRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhc-ccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 484
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=5.4e+02 Score=25.78 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCL---PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
|.-=.+-|.+..++..|...|.+-++..+. .+.+.|+.-..+-...|++..|+.=-....... +.....|.-=..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHH
Confidence 334455677777888888888777765432 234455555555556677777766665555543 2233444444455
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMV 615 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~ 615 (730)
+....++++|....++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 556666666666666553
No 485
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=26.99 E-value=6.6e+02 Score=25.24 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER------KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
++++..++++....+ .|.+......|.++.... +|..-..+|+-+.... |++++--.-.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 608 HRLLDQMVSL-GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 608 ~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+.+.+-+... ++.--...+..-...+.+.|+.++|..-|++...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
No 486
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=26.90 E-value=5.5e+02 Score=26.65 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HhcCCHHHHHHH
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY--------AHLGLIYSAFDV 680 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~--------~~~g~~~~A~~~ 680 (730)
++-..+-...+.||..+.+.+...++..-..+-...+|+-..+++ .|=.+.+..|+-.- .+...-++++++
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikf 247 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKF 247 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHH
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCChhhhhhhccchhhh
Q 004791 681 LKRMFDAGCEPSHHTYAFLIKHLSNKKVDERKQQCDGILFG 721 (730)
Q Consensus 681 ~~~m~~~g~~p~~~~~~~l~~~l~~~~~~e~~~~~~~~l~~ 721 (730)
++.|-..=-..|...+-.|...++..--.-..+..+.+|+|
T Consensus 248 Lenmp~~L~~eDvpDffsLAqyY~~KTP~sfrkD~~~~lfG 288 (669)
T KOG3636|consen 248 LENMPAQLSVEDVPDFFSLAQYYSDKTPESFRKDFHYILFG 288 (669)
T ss_pred HHcCchhcccccchhHHHHHHHHhhcChHHhhhhhhHhhhc
No 487
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.65 E-value=2.9e+02 Score=23.81 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 334 MSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN 377 (730)
Q Consensus 334 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 377 (730)
+.+.|.+++ .--..++..+...++.-.|.++|+++.+.+...+
T Consensus 12 lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 12 LKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 334444432 2233444555555555556666666665544443
No 488
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=26.58 E-value=7.4e+02 Score=25.68 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGED--DCRPTV-RTYTVVIFGLCRVGRKSEALEFFNEMS 335 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 335 (730)
.+...|++...-.|+.....+.++.|.+. |..|.. +| -.+.-+|.-.|++.+|.+.|-..+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777788888888888887664 333332 34 346677888889999998887665
No 489
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.05 E-value=3.4e+02 Score=21.56 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
.-.+.+++....+....+-....|.-.|...|+-+.|.+-|+.=. .+-|.+.+|--+
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDF 111 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHH
Confidence 334456666655544444455567777888888888877777543 356666666533
No 490
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.01 E-value=7e+02 Score=25.21 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 605 DHAHRLLDQMVSLGLKPD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
++...+++.+++. -|+ +..|-+++......|.+++++.+|++++..|-.|=...-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555556655553 233 33567777777788888888888888888887775555555555544
No 491
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.98 E-value=2.5e+02 Score=20.01 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=8.5
Q ss_pred hcCChhHHHHHHHHHHH
Q 004791 215 KVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 215 ~~g~~~~A~~~~~~~~~ 231 (730)
..|++-+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34555555555555543
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.59 E-value=1.6e+02 Score=21.29 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=23.5
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLC 319 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 319 (730)
+....++.++...++..-.++++..+.++...|. -+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555555555555555555555555555542 34444444444443
No 493
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.58 E-value=5.9e+02 Score=24.20 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHH
Q 004791 174 LLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK-VGNVGEAELYVSKIVQ 231 (730)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~ 231 (730)
+++..-+.++++++...+.+++..+...+..-.+.+-.+|-. .|....+++.+..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 445566778888888888888887666666666666666643 2444555555555443
No 494
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.26 E-value=1e+03 Score=26.95 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---C----------CCHHHHHHHHHHH
Q 004791 568 KVQEALLLVEKMT-KMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL---K----------PDVYTYTAFIQAY 633 (730)
Q Consensus 568 ~~~~A~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----------p~~~~~~~l~~~~ 633 (730)
..++....+.... +.|+..+......++... .|+...|+.+++++...|- . .+......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 3455555665554 457777777777666654 5999999999988876431 0 1122223333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 004791 634 CSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~ 654 (730)
. .|+...++.+++++.+.|+
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAV 276 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCC
Confidence 3 3566666666666666654
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.26 E-value=6.5e+02 Score=30.35 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDL 295 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~ 295 (730)
...|..+...+.+.|+.++|...
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHh
Confidence 34455555555555555555554
No 496
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.10 E-value=9.2e+02 Score=26.29 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY-RERKVQEALLLVEKMT 580 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~A~~~~~~m~ 580 (730)
+..+.+.|.+..|.++.+-+.+.+...|+.....+|+.|+ +..+++--++++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445566777777777777766654446666666666665 5566666666666553
No 497
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=1.1e+03 Score=27.20 Aligned_cols=256 Identities=13% Similarity=0.114 Sum_probs=115.4
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
..|...|++++|.+.-+.-+. --..++..-++.|.+.+++..|-++|.++.+ .+..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPD----ALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Confidence 456667778777776544311 0112344455667777788888888777633 1222222333333333
Q ss_pred HHHHHHHHHHHCCCCCChhhHHH-----HHHHHH-hcCCH----HHHHHHHHHHH--------HC-CCCCChhhHHHHHH
Q 004791 326 EALEFFNEMSARGCEPNVHTYTV-----LIDCLC-KENKV----DEASELLNRML--------EK-GLFPNVVTYNALID 386 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~~~~~~~-----li~~~~-~~g~~----~~A~~~~~~~~--------~~-g~~~~~~~~~~li~ 386 (730)
++..|-.=+-....|...+-.. ++..|. +.+++ +++.+-++.-. .. ...-+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 3333321111122232222211 222221 22222 22222221111 00 00112223344455
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 004791 387 GYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466 (730)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 466 (730)
.+...|+.++...+-.-|.. |..++.-++..+.+++|++++..-. +...+....-. .......+
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~-Li~~~p~~ 576 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPE-LITHSPKE 576 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhH-HHhcCcHH
Confidence 55667777777666555442 5567777888888888888775431 11111111100 11122333
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 004791 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKR---GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK 533 (730)
Q Consensus 467 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 533 (730)
....+....+. ........++..+.+. .....+...++-....-...++..+|.++..|++..+
T Consensus 577 tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 577 TVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 33333332221 1222233344444443 2334445544444443334477788888887776554
No 498
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.95 E-value=8.2e+02 Score=25.64 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
...|+.-|.-.|++.+|..+++++--- +--...++.+++.+..+.|+-..-+.++++.-..|+ +|-+.+-.+|-+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 345777788889999998888876311 111355678888888888887778888888776653 344445455433
No 499
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.86 E-value=5.4e+02 Score=23.49 Aligned_cols=84 Identities=12% Similarity=0.201 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE------------- 340 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------- 340 (730)
+.|-..+..-++.-+.+++-+.|- ..+-.+++..|.+..++.++.++++.|.+..+.
T Consensus 108 vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~ 177 (233)
T PF14669_consen 108 VPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKL 177 (233)
T ss_pred CCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCcccc
Confidence 345555555555544444333221 112234556667777777777777777653221
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 341 -PNVHTYTVLIDCLCKENKVDEASELLN 367 (730)
Q Consensus 341 -~~~~~~~~li~~~~~~g~~~~A~~~~~ 367 (730)
+.-..-|..+..+.+.|.+|.|..+++
T Consensus 178 asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 178 ASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred CchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 122333444455555555555555544
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.58 E-value=3e+02 Score=22.38 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVY 589 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 589 (730)
+++.+.++...++|+++.+-|.+.| ..+..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e 96 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPE 96 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 3444555666666666666666655 34433
Done!