Query 004791
Match_columns 730
No_of_seqs 865 out of 4557
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 05:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.9E-42 2E-46 380.4 42.8 499 166-699 82-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9E-42 3.1E-46 379.0 42.1 504 128-669 83-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.7E-28 2.3E-32 251.7 47.4 376 284-671 10-386 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.9E-28 3E-32 250.8 47.1 379 248-637 9-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.9E-29 6.5E-34 267.2 24.0 204 187-390 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.2E-28 4.1E-33 261.1 27.1 207 502-708 9-225 (501)
7 2gw1_A Mitochondrial precursor 100.0 6.8E-25 2.3E-29 238.3 40.8 280 414-701 187-490 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.8E-24 9.5E-29 233.5 40.2 273 378-658 186-482 (514)
9 3fp2_A TPR repeat-containing p 99.9 5.2E-23 1.8E-27 224.7 39.3 441 204-687 26-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 5.7E-27 215.4 39.5 314 271-616 24-357 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 3.6E-22 1.2E-26 212.8 40.3 387 291-714 10-446 (450)
12 3fp2_A TPR repeat-containing p 99.9 5.4E-22 1.8E-26 216.7 40.8 442 167-652 24-491 (537)
13 2xm6_A Protein corresponding t 99.9 3.3E-18 1.1E-22 183.8 50.8 351 272-652 38-432 (490)
14 2xm6_A Protein corresponding t 99.9 9.7E-18 3.3E-22 180.2 50.7 351 237-617 38-432 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 8.5E-19 2.9E-23 180.2 39.9 343 273-670 3-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 7.4E-19 2.5E-23 180.7 38.7 214 237-477 2-217 (359)
17 1xi4_A Clathrin heavy chain; a 99.9 2E-16 6.8E-21 176.8 57.7 534 108-705 984-1575(1630)
18 2ooe_A Cleavage stimulation fa 99.9 2E-17 6.7E-22 179.7 44.9 218 466-687 256-492 (530)
19 2ooe_A Cleavage stimulation fa 99.8 3.3E-17 1.1E-21 177.9 44.6 429 226-714 2-484 (530)
20 3hym_B Cell division cycle pro 99.8 2.7E-18 9.1E-23 174.3 33.6 269 377-651 21-298 (330)
21 3hym_B Cell division cycle pro 99.8 2.6E-18 8.9E-23 174.4 33.1 285 272-563 21-314 (330)
22 1xi4_A Clathrin heavy chain; a 99.8 6.6E-15 2.2E-19 164.8 62.2 280 285-608 1088-1375(1630)
23 1fch_A Peroxisomal targeting s 99.8 3.1E-18 1.1E-22 176.9 25.5 279 379-684 65-356 (368)
24 1fch_A Peroxisomal targeting s 99.8 7.4E-18 2.5E-22 174.1 26.0 307 282-648 34-355 (368)
25 1b89_A Protein (clathrin heavy 99.8 2.3E-18 8E-23 173.1 20.9 353 275-678 34-408 (449)
26 4eqf_A PEX5-related protein; a 99.8 4.5E-18 1.5E-22 175.5 22.1 266 413-683 65-352 (365)
27 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.5E-22 167.7 23.7 281 180-504 15-303 (449)
28 4eqf_A PEX5-related protein; a 99.8 1.5E-17 5.3E-22 171.4 22.3 277 307-613 64-352 (365)
29 4g1t_A Interferon-induced prot 99.8 4.2E-16 1.4E-20 166.9 32.7 298 288-618 153-460 (472)
30 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.9E-20 163.5 35.6 385 166-583 49-460 (472)
31 3cv0_A Peroxisome targeting si 99.8 1.3E-16 4.3E-21 161.7 26.5 279 379-685 22-313 (327)
32 3cv0_A Peroxisome targeting si 99.8 1.7E-16 5.7E-21 160.7 25.1 281 342-650 20-313 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 9.4E-18 3.2E-22 181.8 13.0 116 238-353 127-246 (1134)
34 3mkr_A Coatomer subunit epsilo 99.7 8.9E-16 3E-20 151.7 25.9 192 450-651 67-263 (291)
35 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.8E-20 150.2 26.7 146 284-441 10-158 (291)
36 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-15 5.5E-20 160.2 26.8 346 209-583 9-388 (452)
37 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.4E-21 176.8 13.2 137 551-692 125-265 (1134)
38 3e4b_A ALGK; tetratricopeptide 99.7 2.9E-15 9.9E-20 158.2 25.3 372 280-685 10-419 (452)
39 3uq3_A Heat shock protein STI1 99.7 1.7E-14 5.7E-19 140.3 26.2 225 449-687 6-236 (258)
40 2pl2_A Hypothetical conserved 99.7 9.5E-15 3.2E-19 137.8 21.7 198 482-685 4-212 (217)
41 3uq3_A Heat shock protein STI1 99.6 3.6E-14 1.2E-18 138.0 25.3 222 416-651 8-235 (258)
42 2pl2_A Hypothetical conserved 99.6 3.6E-14 1.2E-18 133.7 22.2 199 446-650 3-212 (217)
43 4e6h_A MRNA 3'-END-processing 99.6 7.1E-12 2.4E-16 136.5 41.2 457 181-667 45-583 (679)
44 2ho1_A Type 4 fimbrial biogene 99.6 3.1E-13 1.1E-17 130.9 27.2 209 484-698 38-247 (252)
45 2h6f_A Protein farnesyltransfe 99.6 1.5E-13 5E-18 140.4 25.5 248 448-704 97-364 (382)
46 1ouv_A Conserved hypothetical 99.6 2.1E-12 7.1E-17 126.7 32.7 224 447-688 5-252 (273)
47 3u4t_A TPR repeat-containing p 99.6 3.1E-13 1E-17 132.6 26.5 229 419-651 9-249 (272)
48 3u4t_A TPR repeat-containing p 99.6 2E-13 6.7E-18 134.0 24.4 244 448-697 3-258 (272)
49 2vq2_A PILW, putative fimbrial 99.6 4.9E-13 1.7E-17 126.8 26.2 211 483-699 8-221 (225)
50 4e6h_A MRNA 3'-END-processing 99.6 2E-11 7E-16 132.9 41.2 441 165-633 63-584 (679)
51 1ouv_A Conserved hypothetical 99.6 2E-12 6.9E-17 126.9 30.4 224 167-408 5-252 (273)
52 2h6f_A Protein farnesyltransfe 99.6 5E-13 1.7E-17 136.4 25.9 214 381-601 100-322 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-13 4.9E-18 132.4 20.1 200 483-687 23-222 (243)
54 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-12 4.9E-17 126.2 27.3 202 448-653 37-239 (252)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-13 4E-18 135.9 19.7 246 426-681 18-269 (275)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.8E-18 136.0 18.5 197 274-476 44-243 (275)
57 2q7f_A YRRB protein; TPR, prot 99.6 3E-13 1E-17 130.1 20.9 212 447-664 22-233 (243)
58 2vq2_A PILW, putative fimbrial 99.5 2.6E-12 9E-17 121.7 26.4 203 447-652 7-211 (225)
59 3vtx_A MAMA; tetratricopeptide 99.5 2.5E-12 8.5E-17 117.7 22.5 174 517-696 4-177 (184)
60 3sf4_A G-protein-signaling mod 99.5 7.5E-13 2.6E-17 138.3 18.5 301 342-674 8-363 (406)
61 4a1s_A PINS, partner of inscut 99.5 4.1E-13 1.4E-17 140.7 16.5 272 380-687 50-372 (411)
62 4a1s_A PINS, partner of inscut 99.5 5.5E-13 1.9E-17 139.7 17.4 236 169-405 49-330 (411)
63 2ond_A Cleavage stimulation fa 99.5 2.8E-11 9.7E-16 120.8 29.0 218 465-687 33-270 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 9.8E-12 3.3E-16 113.7 22.6 167 482-652 4-170 (184)
65 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5E-17 136.0 19.1 240 165-405 6-294 (406)
66 4abn_A Tetratricopeptide repea 99.4 3.7E-12 1.3E-16 135.3 21.1 215 464-684 84-318 (474)
67 3ro2_A PINS homolog, G-protein 99.4 4.4E-12 1.5E-16 128.4 20.5 275 381-687 8-332 (338)
68 2ond_A Cleavage stimulation fa 99.4 6.5E-11 2.2E-15 118.2 28.3 219 430-652 33-270 (308)
69 3ro2_A PINS homolog, G-protein 99.4 2E-12 6.9E-17 130.9 17.2 234 170-404 7-289 (338)
70 3ulq_A Response regulator aspa 99.4 1.1E-11 3.8E-16 128.2 22.4 230 454-686 109-367 (383)
71 3ulq_A Response regulator aspa 99.4 1.1E-11 3.8E-16 128.3 22.3 229 420-651 110-367 (383)
72 4abn_A Tetratricopeptide repea 99.4 3.3E-11 1.1E-15 128.0 23.1 210 498-715 83-314 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 2.3E-12 8E-17 129.0 13.5 236 450-686 29-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-12 5.8E-17 130.0 12.3 172 165-336 24-223 (311)
75 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.4E-15 106.0 20.8 166 518-687 8-173 (186)
76 3q15_A PSP28, response regulat 99.3 2.1E-10 7E-15 118.4 23.4 230 453-686 106-364 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.3 6.4E-11 2.2E-15 130.7 20.6 165 517-686 8-173 (723)
78 1hz4_A MALT regulatory protein 99.3 8.2E-10 2.8E-14 113.7 27.0 232 173-404 19-279 (373)
79 4i17_A Hypothetical protein; T 99.3 2.7E-10 9.4E-15 108.1 21.6 208 481-702 5-222 (228)
80 3q15_A PSP28, response regulat 99.3 3.2E-10 1.1E-14 116.9 23.6 227 421-651 109-364 (378)
81 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.9E-14 112.6 26.8 233 208-440 19-280 (373)
82 3as5_A MAMA; tetratricopeptide 99.3 3.6E-10 1.2E-14 103.0 20.2 163 485-651 10-172 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.3 1.7E-10 5.7E-15 127.4 20.6 165 483-651 9-173 (723)
84 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.9E-14 103.7 22.0 194 448-652 7-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.7E-15 112.5 14.4 227 459-686 12-280 (283)
86 1qqe_A Vesicular transport pro 99.1 2.6E-09 8.9E-14 105.5 20.7 192 493-686 47-268 (292)
87 3edt_B KLC 2, kinesin light ch 99.1 3.3E-10 1.1E-14 111.3 13.7 226 181-407 14-281 (283)
88 2uy1_A Cleavage stimulation fa 99.1 1.3E-07 4.5E-12 100.0 34.0 203 466-686 197-412 (493)
89 2uy1_A Cleavage stimulation fa 99.1 1.4E-07 4.8E-12 99.8 32.1 125 519-651 287-412 (493)
90 3urz_A Uncharacterized protein 99.1 5.1E-09 1.8E-13 97.5 17.9 136 559-700 60-197 (208)
91 2fo7_A Synthetic consensus TPR 99.1 9.3E-09 3.2E-13 87.7 18.1 130 555-687 3-132 (136)
92 3urz_A Uncharacterized protein 99.1 7.9E-09 2.7E-13 96.2 18.2 138 522-665 58-197 (208)
93 3mv2_B Coatomer subunit epsilo 99.0 4.4E-08 1.5E-12 94.5 22.9 179 467-652 85-282 (310)
94 3qky_A Outer membrane assembly 99.0 1.3E-08 4.4E-13 98.7 19.5 187 483-693 15-228 (261)
95 3dra_A Protein farnesyltransfe 99.0 8.7E-08 3E-12 93.6 25.0 229 463-697 48-296 (306)
96 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4E-13 87.1 16.9 130 520-652 3-132 (136)
97 3qky_A Outer membrane assembly 99.0 8.3E-09 2.8E-13 100.1 17.6 187 446-652 13-224 (261)
98 3rjv_A Putative SEL1 repeat pr 99.0 2.4E-08 8.3E-13 93.1 20.0 175 502-688 5-198 (212)
99 3mv2_B Coatomer subunit epsilo 99.0 1.1E-07 3.9E-12 91.6 24.9 247 424-696 24-289 (310)
100 1qqe_A Vesicular transport pro 99.0 9E-09 3.1E-13 101.6 17.9 167 240-406 79-268 (292)
101 2pzi_A Probable serine/threoni 99.0 2.8E-09 9.6E-14 118.4 14.5 173 494-673 402-583 (681)
102 3rjv_A Putative SEL1 repeat pr 99.0 7.4E-08 2.5E-12 89.8 21.6 176 466-653 4-198 (212)
103 4ga2_A E3 SUMO-protein ligase 99.0 2.3E-09 8E-14 93.7 10.0 118 565-686 9-128 (150)
104 3dra_A Protein farnesyltransfe 98.9 4.2E-07 1.4E-11 88.7 26.2 217 290-511 50-286 (306)
105 4ga2_A E3 SUMO-protein ligase 98.9 4.1E-09 1.4E-13 92.2 10.0 144 525-673 4-149 (150)
106 2r5s_A Uncharacterized protein 98.9 1E-08 3.4E-13 92.6 12.9 161 521-685 9-171 (176)
107 2pzi_A Probable serine/threoni 98.9 1.2E-08 4E-13 113.4 16.1 173 284-462 402-582 (681)
108 2vsy_A XCC0866; transferase, g 98.9 4.2E-08 1.4E-12 107.1 19.6 154 496-653 2-158 (568)
109 3qou_A Protein YBBN; thioredox 98.9 2.7E-08 9.1E-13 97.8 16.2 163 517-685 116-282 (287)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 9E-08 3.1E-12 90.3 19.1 184 483-688 4-214 (225)
111 2r5s_A Uncharacterized protein 98.9 4E-08 1.4E-12 88.6 15.0 158 209-370 12-171 (176)
112 2vsy_A XCC0866; transferase, g 98.9 4E-08 1.4E-12 107.2 17.9 156 461-620 2-160 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 2E-07 6.9E-12 87.8 20.3 189 168-374 4-215 (225)
114 3qou_A Protein YBBN; thioredox 98.9 8.6E-08 3E-12 94.1 18.1 166 202-371 116-283 (287)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 7.3E-08 2.5E-12 95.8 16.9 183 492-679 45-253 (307)
116 3q7a_A Farnesyltransferase alp 98.8 2.2E-06 7.4E-11 84.5 25.4 232 461-698 67-341 (349)
117 3u3w_A Transcriptional activat 98.8 1.7E-06 5.7E-11 85.3 23.7 164 523-686 80-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.1E-07 1.4E-11 84.8 18.3 127 520-651 8-149 (213)
119 4gco_A Protein STI-1; structur 98.7 2.5E-07 8.7E-12 77.7 14.8 102 589-694 14-115 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.7E-07 2.3E-11 83.3 18.7 128 241-373 9-151 (213)
121 2ifu_A Gamma-SNAP; membrane fu 98.7 2.7E-07 9.2E-12 91.7 16.7 95 310-405 118-222 (307)
122 2qfc_A PLCR protein; TPR, HTH, 98.7 2.4E-06 8.1E-11 84.2 23.0 166 520-685 77-264 (293)
123 1a17_A Serine/threonine protei 98.7 6.9E-07 2.4E-11 79.2 16.9 129 554-685 14-144 (166)
124 3q7a_A Farnesyltransferase alp 98.7 7.1E-06 2.4E-10 80.8 25.2 179 171-355 57-254 (349)
125 4gco_A Protein STI-1; structur 98.7 5.3E-07 1.8E-11 75.7 15.0 108 554-665 14-122 (126)
126 4f3v_A ESX-1 secretion system 98.7 1.2E-06 4E-11 83.5 18.6 197 495-699 18-247 (282)
127 3gyz_A Chaperone protein IPGC; 98.7 2.1E-07 7.3E-12 80.7 12.4 96 589-686 37-132 (151)
128 3gyz_A Chaperone protein IPGC; 98.7 1.5E-07 5E-12 81.8 10.9 104 552-659 35-138 (151)
129 3u3w_A Transcriptional activat 98.7 7.4E-06 2.5E-10 80.6 24.8 163 489-651 81-265 (293)
130 4f3v_A ESX-1 secretion system 98.6 1.4E-06 4.9E-11 82.8 18.3 188 180-373 18-238 (282)
131 1a17_A Serine/threonine protei 98.6 1E-06 3.5E-11 78.1 16.4 130 519-651 14-145 (166)
132 2vgx_A Chaperone SYCD; alterna 98.6 3.1E-07 1.1E-11 79.7 12.0 109 576-687 10-118 (148)
133 3dss_A Geranylgeranyl transfer 98.6 1.4E-05 4.8E-10 78.4 24.7 221 466-695 48-310 (331)
134 2e2e_A Formate-dependent nitri 98.6 2.8E-07 9.7E-12 83.0 11.8 119 566-687 23-144 (177)
135 1na0_A Designed protein CTPR3; 98.6 1.8E-06 6.2E-11 72.0 16.0 94 556-651 12-105 (125)
136 3gw4_A Uncharacterized protein 98.6 5E-07 1.7E-11 83.3 13.2 156 530-686 4-175 (203)
137 2c2l_A CHIP, carboxy terminus 98.6 2.2E-07 7.6E-12 90.8 10.9 193 483-686 4-198 (281)
138 1na0_A Designed protein CTPR3; 98.6 1.8E-06 6.2E-11 72.0 15.3 116 518-636 9-124 (125)
139 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.7E-11 74.5 13.8 95 555-651 18-112 (133)
140 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5E-11 73.3 14.4 115 555-672 14-128 (131)
141 2e2e_A Formate-dependent nitri 98.6 3.3E-07 1.1E-11 82.6 10.8 121 529-652 21-144 (177)
142 2c2l_A CHIP, carboxy terminus 98.5 3.5E-07 1.2E-11 89.3 11.5 94 241-336 7-100 (281)
143 2lni_A Stress-induced-phosphop 98.5 1.6E-06 5.4E-11 73.5 14.3 118 517-637 15-132 (133)
144 3gw4_A Uncharacterized protein 98.5 9.5E-07 3.2E-11 81.4 13.9 156 495-651 4-175 (203)
145 1p5q_A FKBP52, FK506-binding p 98.5 1.3E-06 4.6E-11 87.7 15.9 130 553-685 147-292 (336)
146 2vgx_A Chaperone SYCD; alterna 98.5 3.1E-07 1.1E-11 79.8 9.6 109 541-652 10-118 (148)
147 4gcn_A Protein STI-1; structur 98.5 1.4E-06 4.8E-11 73.3 13.2 106 589-697 9-120 (127)
148 2qfc_A PLCR protein; TPR, HTH, 98.5 8.4E-06 2.9E-10 80.2 20.8 166 486-651 78-265 (293)
149 3upv_A Heat shock protein STI1 98.5 2.6E-06 8.9E-11 71.5 14.7 98 588-687 4-101 (126)
150 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.1E-11 72.3 14.0 119 518-639 12-130 (131)
151 2fbn_A 70 kDa peptidylprolyl i 98.5 2.1E-07 7.2E-12 85.7 7.6 129 555-686 40-185 (198)
152 3dss_A Geranylgeranyl transfer 98.5 6.3E-05 2.2E-09 73.7 25.2 193 494-693 40-271 (331)
153 2xcb_A PCRH, regulatory protei 98.5 6.1E-07 2.1E-11 77.4 9.6 99 587-687 17-115 (142)
154 1p5q_A FKBP52, FK506-binding p 98.5 2.6E-06 9E-11 85.5 15.7 130 519-651 148-293 (336)
155 3upv_A Heat shock protein STI1 98.4 4.3E-06 1.5E-10 70.1 14.2 96 554-651 5-100 (126)
156 4gcn_A Protein STI-1; structur 98.4 3.5E-06 1.2E-10 70.8 13.4 105 555-662 10-120 (127)
157 3q49_B STIP1 homology and U bo 98.4 1E-05 3.5E-10 68.8 16.3 99 586-686 7-105 (137)
158 1elw_A TPR1-domain of HOP; HOP 98.4 1E-05 3.5E-10 66.5 15.7 95 590-686 6-100 (118)
159 2fbn_A 70 kDa peptidylprolyl i 98.4 4.2E-07 1.4E-11 83.6 7.6 131 519-652 39-186 (198)
160 2xcb_A PCRH, regulatory protei 98.4 1.3E-06 4.4E-11 75.3 9.5 98 552-651 17-114 (142)
161 3sz7_A HSC70 cochaperone (SGT) 98.4 5.4E-06 1.9E-10 73.3 13.6 97 588-686 11-107 (164)
162 1elw_A TPR1-domain of HOP; HOP 98.3 1.6E-05 5.5E-10 65.3 15.2 97 554-652 5-101 (118)
163 3q49_B STIP1 homology and U bo 98.3 7.5E-06 2.6E-10 69.7 12.8 99 551-651 7-105 (137)
164 2kck_A TPR repeat; tetratricop 98.3 4.6E-06 1.6E-10 67.9 11.0 98 588-687 6-106 (112)
165 1elr_A TPR2A-domain of HOP; HO 98.3 9E-06 3.1E-10 68.3 13.1 108 589-699 5-118 (131)
166 1elr_A TPR2A-domain of HOP; HO 98.3 5.5E-06 1.9E-10 69.7 11.7 111 554-667 5-121 (131)
167 1hxi_A PEX5, peroxisome target 98.3 7E-06 2.4E-10 68.2 11.4 94 591-686 20-113 (121)
168 2dba_A Smooth muscle cell asso 98.3 3.2E-05 1.1E-09 66.7 15.8 98 587-687 27-128 (148)
169 3sz7_A HSC70 cochaperone (SGT) 98.3 1E-05 3.6E-10 71.5 12.8 99 552-652 10-108 (164)
170 2dba_A Smooth muscle cell asso 98.3 3.3E-05 1.1E-09 66.6 15.8 98 552-652 27-128 (148)
171 4b4t_Q 26S proteasome regulato 98.3 5.4E-05 1.8E-09 79.1 20.4 121 565-685 107-243 (434)
172 1hxi_A PEX5, peroxisome target 98.2 9.7E-06 3.3E-10 67.3 11.2 93 557-651 21-113 (121)
173 2xev_A YBGF; tetratricopeptide 98.2 2.6E-05 8.8E-10 65.5 14.0 93 593-687 7-105 (129)
174 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.9E-10 64.9 11.5 94 556-651 9-105 (112)
175 3rkv_A Putative peptidylprolyl 98.2 1.7E-05 5.8E-10 69.9 12.1 75 623-700 63-138 (162)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.1E-05 7.1E-10 82.7 14.1 145 517-685 267-413 (457)
177 4b4t_Q 26S proteasome regulato 98.1 8.7E-05 3E-09 77.5 19.0 197 420-616 11-244 (434)
178 1dce_A Protein (RAB geranylger 98.1 0.0001 3.6E-09 79.1 19.7 115 569-686 89-220 (567)
179 2hr2_A Hypothetical protein; a 98.1 8.2E-05 2.8E-09 63.7 14.9 107 591-697 14-146 (159)
180 1dce_A Protein (RAB geranylger 98.1 8.1E-05 2.8E-09 80.0 18.6 173 496-673 42-241 (567)
181 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 69.5 11.0 132 555-686 11-157 (164)
182 1wao_1 Serine/threonine protei 98.1 8.6E-06 2.9E-10 85.9 9.9 118 562-682 15-134 (477)
183 1ihg_A Cyclophilin 40; ppiase 98.1 3.6E-05 1.2E-09 78.1 13.9 140 518-679 223-362 (370)
184 2xev_A YBGF; tetratricopeptide 98.1 0.00012 4E-09 61.3 14.9 92 559-652 8-105 (129)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.7E-05 1.3E-09 80.8 13.7 146 482-650 267-413 (457)
186 3rkv_A Putative peptidylprolyl 98.0 5E-05 1.7E-09 66.9 12.5 68 587-657 62-129 (162)
187 3ro3_A PINS homolog, G-protein 98.0 2.8E-05 9.5E-10 68.1 10.7 132 520-651 11-157 (164)
188 3k9i_A BH0479 protein; putativ 98.0 9.7E-06 3.3E-10 66.9 7.0 86 601-687 3-90 (117)
189 3k9i_A BH0479 protein; putativ 98.0 1E-05 3.5E-10 66.7 7.0 86 566-652 3-90 (117)
190 1ihg_A Cyclophilin 40; ppiase 98.0 5.8E-05 2E-09 76.6 13.8 140 483-644 223-362 (370)
191 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.4E-10 83.9 9.7 117 528-647 16-134 (477)
192 1klx_A Cysteine rich protein B 98.0 0.00021 7.3E-09 60.7 15.1 110 568-688 10-127 (138)
193 2hr2_A Hypothetical protein; a 97.9 0.00012 4E-09 62.7 12.1 95 557-651 15-130 (159)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 2.5E-05 8.7E-10 78.3 8.6 148 518-687 179-328 (338)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 3.8E-05 1.3E-09 77.0 9.2 149 483-652 179-328 (338)
196 1zu2_A Mitochondrial import re 97.8 4E-05 1.4E-09 65.4 7.6 97 602-703 16-134 (158)
197 3n71_A Histone lysine methyltr 97.8 0.00018 6.3E-09 75.2 14.0 96 589-686 352-463 (490)
198 1klx_A Cysteine rich protein B 97.8 0.00092 3.1E-08 56.7 15.4 110 533-653 10-127 (138)
199 1zu2_A Mitochondrial import re 97.7 6.6E-05 2.3E-09 64.1 7.4 97 565-665 14-131 (158)
200 2l6j_A TPR repeat-containing p 97.7 2.1E-05 7E-10 64.0 4.2 62 589-651 5-66 (111)
201 3n71_A Histone lysine methyltr 97.7 0.00019 6.6E-09 75.1 12.1 124 528-651 319-463 (490)
202 1na3_A Designed protein CTPR2; 97.6 0.00061 2.1E-08 52.5 10.8 79 589-669 10-88 (91)
203 2kat_A Uncharacterized protein 97.6 0.00043 1.5E-08 56.5 10.3 77 607-685 4-80 (115)
204 2kat_A Uncharacterized protein 97.6 0.00033 1.1E-08 57.2 9.6 62 588-650 19-80 (115)
205 2l6j_A TPR repeat-containing p 97.6 5.4E-05 1.9E-09 61.4 4.5 90 553-644 4-99 (111)
206 1na3_A Designed protein CTPR2; 97.5 0.0012 4E-08 50.9 10.8 82 553-636 9-90 (91)
207 3ly7_A Transcriptional activat 97.3 0.0025 8.5E-08 62.6 12.9 74 620-697 274-347 (372)
208 3ma5_A Tetratricopeptide repea 97.2 0.0017 5.9E-08 51.2 9.0 63 587-650 6-68 (100)
209 3ma5_A Tetratricopeptide repea 97.2 0.0018 6.3E-08 51.1 9.1 64 622-686 6-69 (100)
210 3qww_A SET and MYND domain-con 97.0 0.0026 8.8E-08 65.4 10.2 62 624-685 341-409 (433)
211 3ly7_A Transcriptional activat 97.0 0.013 4.5E-07 57.6 14.5 75 585-663 274-348 (372)
212 3qwp_A SET and MYND domain-con 96.9 0.0068 2.3E-07 62.3 12.7 106 598-703 297-419 (429)
213 3lvg_A Clathrin heavy chain 1; 96.9 3E-07 1E-11 91.2 -18.9 265 167-468 53-324 (624)
214 2kc7_A BFR218_protein; tetratr 96.7 0.0036 1.2E-07 49.0 6.8 56 595-651 7-63 (99)
215 3qww_A SET and MYND domain-con 96.7 0.0089 3E-07 61.4 11.1 85 567-651 312-410 (433)
216 1pc2_A Mitochondria fission pr 96.5 0.024 8.1E-07 47.8 10.7 92 604-699 14-110 (152)
217 3qwp_A SET and MYND domain-con 96.5 0.025 8.4E-07 58.2 13.3 90 562-651 296-399 (429)
218 2kc7_A BFR218_protein; tetratr 96.4 0.0076 2.6E-07 47.1 7.2 58 560-618 7-65 (99)
219 4ady_A RPN2, 26S proteasome re 96.4 1.6 5.6E-05 48.5 40.6 256 387-651 383-657 (963)
220 3bee_A Putative YFRE protein; 96.3 0.02 6.9E-07 44.1 8.6 64 622-686 5-71 (93)
221 1pc2_A Mitochondria fission pr 96.3 0.015 5.3E-07 48.9 8.2 85 569-657 14-103 (152)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.23 7.7E-06 56.2 21.0 152 178-368 609-761 (814)
223 3bee_A Putative YFRE protein; 96.2 0.024 8.3E-07 43.7 8.7 68 585-653 3-73 (93)
224 3u64_A Protein TP_0956; tetrat 96.2 0.25 8.5E-06 46.5 16.8 87 604-694 179-278 (301)
225 3lvg_A Clathrin heavy chain 1; 96.1 1.7E-05 5.9E-10 78.9 -12.0 468 83-645 35-534 (624)
226 3u64_A Protein TP_0956; tetrat 95.9 0.55 1.9E-05 44.2 17.6 93 289-383 179-282 (301)
227 3mkq_A Coatomer beta'-subunit; 95.9 0.12 4.2E-06 58.4 16.4 123 250-405 611-734 (814)
228 1wy6_A Hypothetical protein ST 95.8 0.4 1.4E-05 38.7 13.8 140 529-690 18-157 (172)
229 3mkq_B Coatomer subunit alpha; 95.7 0.88 3E-05 39.3 16.8 27 238-264 34-60 (177)
230 2v5f_A Prolyl 4-hydroxylase su 95.5 0.12 4.2E-06 40.7 10.2 61 626-686 8-74 (104)
231 3mkq_B Coatomer subunit alpha; 95.4 0.45 1.5E-05 41.1 13.9 129 526-684 13-141 (177)
232 1wy6_A Hypothetical protein ST 95.3 0.69 2.3E-05 37.4 13.4 63 311-374 94-156 (172)
233 2v5f_A Prolyl 4-hydroxylase su 95.3 0.097 3.3E-06 41.3 9.0 69 587-657 4-78 (104)
234 4h7y_A Dual specificity protei 94.9 0.21 7.1E-06 41.4 9.7 104 271-376 11-127 (161)
235 1nzn_A CGI-135 protein, fissio 94.7 0.36 1.2E-05 38.9 10.7 89 602-694 15-108 (126)
236 4h7y_A Dual specificity protei 94.7 0.51 1.7E-05 39.1 11.5 53 567-620 74-126 (161)
237 4ady_A RPN2, 26S proteasome re 94.5 7.7 0.00026 43.3 40.3 279 421-706 382-674 (963)
238 1nzn_A CGI-135 protein, fissio 94.1 0.18 6.2E-06 40.7 7.6 86 568-657 16-106 (126)
239 2wpv_A GET4, UPF0363 protein Y 92.9 6.9 0.00024 37.5 18.1 26 342-367 133-158 (312)
240 2ff4_A Probable regulatory pro 90.9 1.6 5.4E-05 44.0 11.6 73 626-699 174-251 (388)
241 1v54_E Cytochrome C oxidase po 90.2 1.4 4.6E-05 33.5 7.5 64 639-703 26-89 (109)
242 4gns_B Protein CSD3, chitin bi 90.0 1.1 3.9E-05 48.8 10.0 128 206-334 251-397 (754)
243 3o48_A Mitochondria fission 1 89.7 5.2 0.00018 32.4 11.1 77 620-698 37-116 (134)
244 4gns_B Protein CSD3, chitin bi 89.6 1.7 5.7E-05 47.5 10.9 50 656-707 611-660 (754)
245 1y8m_A FIS1; mitochondria, unk 89.4 7.9 0.00027 31.8 12.3 23 629-651 83-105 (144)
246 3o48_A Mitochondria fission 1 89.3 3.8 0.00013 33.2 10.0 71 585-657 37-110 (134)
247 4fhn_B Nucleoporin NUP120; pro 88.3 6.7 0.00023 45.9 15.7 192 242-440 816-1048(1139)
248 1y8m_A FIS1; mitochondria, unk 87.3 11 0.00038 31.0 13.4 78 620-699 36-116 (144)
249 3ffl_A Anaphase-promoting comp 87.2 4.4 0.00015 34.4 9.5 119 171-302 23-151 (167)
250 4b4t_P 26S proteasome regulato 87.1 28 0.00097 35.4 20.0 164 521-684 140-321 (445)
251 4b4t_P 26S proteasome regulato 86.4 31 0.0011 35.2 21.9 189 462-651 30-246 (445)
252 2y69_E Cytochrome C oxidase su 86.2 3 0.0001 33.6 7.5 62 641-703 71-132 (152)
253 3txn_A 26S proteasome regulato 86.0 29 0.001 34.5 17.2 225 483-708 19-271 (394)
254 2ff4_A Probable regulatory pro 85.8 3.3 0.00011 41.6 10.0 70 591-661 174-248 (388)
255 2wpv_A GET4, UPF0363 protein Y 85.8 25 0.00086 33.6 20.1 27 236-262 132-158 (312)
256 4fhn_B Nucleoporin NUP120; pro 85.3 13 0.00043 43.6 15.8 150 277-434 816-992 (1139)
257 3lpz_A GET4 (YOR164C homolog); 85.0 29 0.00098 33.5 21.9 25 307-331 135-159 (336)
258 3lpz_A GET4 (YOR164C homolog); 83.9 32 0.0011 33.2 20.8 27 235-261 133-159 (336)
259 3ffl_A Anaphase-promoting comp 81.0 9.8 0.00034 32.2 9.1 20 629-648 128-147 (167)
260 1v54_E Cytochrome C oxidase po 80.4 15 0.00052 27.9 8.8 49 533-581 25-73 (109)
261 3txn_A 26S proteasome regulato 77.5 60 0.002 32.3 23.4 93 523-615 104-208 (394)
262 2uwj_G Type III export protein 77.2 21 0.00073 27.0 8.9 78 218-303 21-98 (115)
263 2p58_C Putative type III secre 76.6 22 0.00076 26.9 9.9 78 218-303 22-99 (116)
264 4b4t_R RPN7, 26S proteasome re 76.2 23 0.00079 35.9 12.3 62 555-616 133-196 (429)
265 3ltm_A Alpha-REP4; protein eng 73.6 48 0.0016 29.3 19.9 154 201-371 31-184 (211)
266 2p58_C Putative type III secre 73.5 25 0.00085 26.7 8.2 52 596-653 48-99 (116)
267 2y69_E Cytochrome C oxidase su 73.1 27 0.00091 28.3 8.8 62 533-595 68-129 (152)
268 3esl_A Checkpoint serine/threo 72.3 30 0.001 30.3 10.1 56 601-656 92-148 (202)
269 4b4t_R RPN7, 26S proteasome re 70.7 26 0.00088 35.6 11.1 99 519-617 132-237 (429)
270 1zbp_A Hypothetical protein VP 70.6 16 0.00056 33.8 8.3 114 561-687 5-129 (273)
271 2uwj_G Type III export protein 70.3 24 0.00083 26.7 7.5 52 596-653 47-98 (115)
272 3ltm_A Alpha-REP4; protein eng 64.4 74 0.0025 27.9 19.5 171 166-356 31-201 (211)
273 3esl_A Checkpoint serine/threo 63.4 57 0.002 28.6 10.0 56 566-621 92-148 (202)
274 1wdy_A 2-5A-dependent ribonucl 61.3 1E+02 0.0034 28.4 13.2 7 353-359 112-118 (285)
275 4a1g_A Mitotic checkpoint seri 57.4 81 0.0028 26.2 9.5 54 640-693 82-136 (152)
276 2wvi_A Mitotic checkpoint seri 57.2 37 0.0013 28.7 7.5 51 642-692 79-130 (164)
277 3kea_A K1L; tropism, ANK repea 55.3 1.3E+02 0.0046 27.9 12.7 49 210-262 35-83 (285)
278 1wdy_A 2-5A-dependent ribonucl 55.0 1E+02 0.0036 28.2 11.7 46 350-399 76-123 (285)
279 1zbp_A Hypothetical protein VP 54.5 1.3E+02 0.0046 27.7 15.1 113 526-651 5-128 (273)
280 3eu9_A Huntingtin-interacting 52.2 1.1E+02 0.0036 27.3 10.9 10 282-291 48-57 (240)
281 3eu9_A Huntingtin-interacting 51.4 95 0.0033 27.6 10.5 8 388-395 184-191 (240)
282 1k1a_A B-cell lymphoma 3-encod 49.1 98 0.0033 27.6 10.1 22 212-233 15-36 (241)
283 2r9g_A AAA ATPase, central reg 46.6 1.4E+02 0.0047 26.1 9.3 17 217-233 28-44 (204)
284 3jxi_A Vanilloid receptor-rela 46.3 36 0.0012 31.2 6.7 25 213-237 12-36 (260)
285 1k1a_A B-cell lymphoma 3-encod 44.9 1.7E+02 0.0057 26.0 11.2 84 177-264 15-102 (241)
286 3kea_A K1L; tropism, ANK repea 44.2 1.7E+02 0.0058 27.2 11.2 48 245-296 35-82 (285)
287 4b4t_S RPN3, 26S proteasome re 43.8 1.4E+02 0.0047 30.8 10.6 26 169-194 232-257 (523)
288 3b7b_A Euchromatic histone-lys 43.6 1.2E+02 0.0042 26.9 9.9 17 424-440 218-234 (237)
289 3kae_A CDC27, possible protein 43.0 99 0.0034 26.2 7.6 27 623-649 114-140 (242)
290 2wvi_A Mitotic checkpoint seri 41.3 1.6E+02 0.0055 24.8 8.9 50 292-341 79-129 (164)
291 4aez_C MAD3, mitotic spindle c 41.0 51 0.0017 29.5 6.1 52 640-691 131-183 (223)
292 1qsa_A Protein (soluble lytic 39.8 3.7E+02 0.013 28.5 38.1 115 463-581 229-347 (618)
293 3hra_A Ankyrin repeat family p 39.7 1.7E+02 0.0057 25.0 9.8 13 388-400 113-125 (201)
294 3eiq_C Programmed cell death p 39.2 1.3E+02 0.0045 29.3 9.3 61 487-548 221-283 (358)
295 3eiq_C Programmed cell death p 38.3 1.4E+02 0.0049 29.0 9.4 24 417-440 221-244 (358)
296 3bge_A Predicted ATPase; struc 38.0 1.4E+02 0.0049 25.9 8.1 21 217-237 21-41 (201)
297 4aez_C MAD3, mitotic spindle c 36.5 1.6E+02 0.0053 26.4 8.5 50 291-340 132-182 (223)
298 3hra_A Ankyrin repeat family p 35.9 1.3E+02 0.0046 25.7 8.5 12 180-191 14-25 (201)
299 1bpo_A Protein (clathrin); cla 35.2 3.1E+02 0.01 27.7 11.1 10 4-13 195-204 (494)
300 1n11_A Ankyrin; clathrin, BAND 35.2 3.4E+02 0.012 26.9 14.1 44 179-226 22-67 (437)
301 2d2s_A Exocyst complex compone 34.9 1.9E+02 0.0064 26.2 9.1 29 342-370 90-118 (235)
302 3ctd_A Putative ATPase, AAA fa 34.0 2E+02 0.0069 25.3 8.5 21 217-237 49-69 (213)
303 2d2s_A Exocyst complex compone 32.8 2.4E+02 0.0082 25.5 9.4 22 524-545 24-45 (235)
304 4gq2_M Nucleoporin NUP120; bet 32.1 3.4E+02 0.011 30.8 12.7 48 345-392 899-950 (950)
305 3jxi_A Vanilloid receptor-rela 32.1 60 0.002 29.7 5.7 55 245-299 9-72 (260)
306 2zu6_B Programmed cell death p 31.8 2.2E+02 0.0074 27.1 9.3 24 382-405 170-193 (307)
307 2f6m_A Suppressor protein STP2 31.0 98 0.0033 21.3 4.8 48 661-709 5-52 (65)
308 3ltj_A Alpharep-4; protein eng 30.6 2.6E+02 0.0088 24.0 19.5 154 201-371 26-179 (201)
309 4a1g_A Mitotic checkpoint seri 30.1 2.4E+02 0.0081 23.4 10.7 49 292-340 84-133 (152)
310 3t8k_A Uncharacterized protein 28.7 2.7E+02 0.0093 23.7 9.8 27 280-306 42-68 (186)
311 2nsz_A Programmed cell death p 28.4 1.6E+02 0.0056 23.5 6.8 22 244-265 13-34 (129)
312 3ubw_A 14-3-3E, 14-3-3 protein 28.3 2.9E+02 0.01 25.3 9.0 63 588-650 31-94 (261)
313 4b4t_S RPN3, 26S proteasome re 27.9 3.9E+02 0.013 27.5 10.9 66 517-582 230-299 (523)
314 3pvs_A Replication-associated 27.4 4.9E+02 0.017 26.2 13.8 35 425-459 267-301 (447)
315 3aji_A 26S proteasome non-ATPa 27.2 3.1E+02 0.011 23.9 11.0 187 242-447 7-199 (231)
316 3bu8_A Telomeric repeat-bindin 27.0 3.3E+02 0.011 24.1 11.1 20 282-301 123-142 (235)
317 1oyz_A Hypothetical protein YI 26.6 3.7E+02 0.013 24.5 22.9 122 551-686 140-262 (280)
318 1oyz_A Hypothetical protein YI 25.5 3.9E+02 0.013 24.4 23.0 170 173-358 42-221 (280)
319 3l6a_A Eukaryotic translation 25.3 3.1E+02 0.011 26.7 9.5 237 485-727 14-284 (364)
320 2nsz_A Programmed cell death p 24.5 2.7E+02 0.0092 22.2 8.5 63 592-655 11-75 (129)
321 2ion_A PDCD4, programmed cell 23.1 2.5E+02 0.0085 23.3 7.1 23 557-579 13-35 (152)
322 4gq2_M Nucleoporin NUP120; bet 22.8 7.8E+02 0.027 27.8 13.5 108 244-357 816-950 (950)
323 2r9g_A AAA ATPase, central reg 22.5 3.9E+02 0.013 23.3 9.9 32 497-529 28-59 (204)
324 2rfa_A Transient receptor pote 22.4 3.9E+02 0.013 23.3 11.6 24 385-408 158-181 (232)
325 3b7b_A Euchromatic histone-lys 21.7 2.2E+02 0.0074 25.2 7.4 207 179-406 19-235 (237)
326 2ion_A PDCD4, programmed cell 21.5 1.5E+02 0.0052 24.6 5.5 21 244-264 15-35 (152)
327 1ug3_A EIF4GI, eukaryotic prot 21.4 4.8E+02 0.016 25.0 10.0 23 243-265 16-38 (339)
328 3ljn_A Hypothetical protein; a 21.1 5.3E+02 0.018 24.6 10.7 218 242-473 21-266 (364)
329 3bge_A Predicted ATPase; struc 20.7 4.2E+02 0.014 23.0 8.5 29 497-525 21-49 (201)
330 1o9d_A 14-3-3-like protein C; 20.3 4E+02 0.014 24.5 8.3 61 590-650 10-73 (260)
331 2ijq_A Hypothetical protein; s 20.3 3.8E+02 0.013 22.4 8.4 51 531-581 45-103 (161)
332 1n11_A Ankyrin; clathrin, BAND 20.2 6.3E+02 0.021 24.8 13.2 84 209-298 17-102 (437)
333 2br9_A 14-3-3E, 14-3-3 protein 20.0 2.9E+02 0.01 24.9 7.3 60 591-650 8-68 (234)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-42 Score=380.44 Aligned_cols=499 Identities=11% Similarity=0.007 Sum_probs=347.3
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLI 245 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 245 (730)
+++..|+.++..|.+.|++++|+.+|++|++ ..|+..++..++.+|.+.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 3455566666666666666666666666653 2345555566666666666666666666655432 34555666666
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
.+|.+.|++++|+++|+++.... .. ..++.+.++ ...+.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCcc----cc-----ccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 66666666666666665322110 00 000000000 11133445677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004791 326 EALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEAS--EL-LNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILD 402 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (730)
+|++.|++|.+.++. +...+..++..+...+..+.+. .+ +..+...+......+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777777766433 4455555554443332222211 11 4444444444445566666777778888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 004791 403 LMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPD 482 (730)
Q Consensus 403 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 482 (730)
++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+++.++..+.+.|++++|.++++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 77765 4677888888888888888888888888887654 2366778888888888888888888888877543 346
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 778888888888888888888888888776443 67788888888888888999988888888765 5577888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD--VYTYTAFIQAYCSI 636 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~ 636 (730)
|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 989999999999999888765 457888889999999999999999999988875 55676 77899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFL 699 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 699 (730)
|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++|+++++. .|+.. .+..+
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 99999999999988854 347888999999999999999999999999875 55543 34333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-42 Score=378.97 Aligned_cols=504 Identities=11% Similarity=-0.019 Sum_probs=408.9
Q ss_pred HHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 128 SEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFN 207 (730)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (730)
....+..++..+...++...+...+.++. ...|+..++..++.+|.+.|++++|+.+|+++... .++..+++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 154 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVL------DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRY 154 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHH------hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHH
Confidence 44567788888888899999999999886 25678899999999999999999999999998653 67899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcC
Q 004791 208 TMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAK 287 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 287 (730)
.++.+|.+.|++++|..+|+++. |+.. ....+.+.++ ...+.+.+..+|+.++.+|.+.|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcC
Confidence 99999999999999999998532 2210 0111111111 12345677888999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALE--F-FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASE 364 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 364 (730)
++++|.++|++|.+.+ +.+...+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9999999999988764 3345566666555443333222211 1 4555555555556677778888999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 365 LLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL 444 (730)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 444 (730)
+|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++..+.+.|++++|..+++++.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998775 4688999999999999999999999999998765 4578889999999999999999999999998653
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 004791 445 SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL 524 (730)
Q Consensus 445 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 524 (730)
+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.++. +..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 4578889999999999999999999999988753 336789999999999999999999999999887654 78899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM----GVKPT--VYTYTILIEEV 598 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~ 598 (730)
+.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999998865 567899999999999999999999999999875 55677 78999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
.+.|++++|.++|+++.+.++ .+..+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 999999999999999998753 388899999999999999999999999999853 235777777766553
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.7e-28 Score=251.72 Aligned_cols=376 Identities=14% Similarity=0.044 Sum_probs=167.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 284 CEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEAS 363 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (730)
.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+..+. +..+|..+...+.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 33444444444444443332 222333333334444444444444444444333211 3334444444444444444444
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 364 ELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN 443 (730)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 443 (730)
..|+++.+..+ .+..+|..++.++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++++..
T Consensus 88 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44444443211 122334444444444444444444444443331 1122233333334444444444444444444321
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 004791 444 LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTA 523 (730)
Q Consensus 444 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 523 (730)
+.+..+|..+...+...|++++|.+.|+++.+.+. .+...+..+...+...|++++|...+++..+..+. +..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHH
Confidence 11233444444444444444444444444443321 12334444444444445555555555444444322 3444555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 524 LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
+..+|.+.|++++|+..++++++.+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..++..+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555443 2334455555555555555555555555555432 3445555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHL 671 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~ 671 (730)
+++|.+.++++++.. +.+..++..++.+|.+.|++++|.+.++++.+. .| +...|..++..+...
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 555555555555432 123445555555555555555555555555542 23 344454444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.9e-28 Score=250.80 Aligned_cols=379 Identities=13% Similarity=0.057 Sum_probs=224.4
Q ss_pred HHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004791 248 YCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEA 327 (730)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (730)
+.+.|++++|.+.++.+.+.. |.+...+..+...+.+.|++++|...++...+.. +.+..+|..++..+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444443321 2233344444444455555555555555444432 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 328 LEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 328 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
++.|+++.+..+. +..+|..++.++.+.|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555544222 3344555555555555555555555555544221 3334444555555555555555555555544
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHH
Q 004791 408 NCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYS 487 (730)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (730)
. +.+..+|..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|...+++..+.. +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 2334555555566666666666666666665542 2244556666666667777777777776666543 22456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004791 488 VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER 567 (730)
Q Consensus 488 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 567 (730)
.+...+...|++++|...|+++.+.++. +..+|..+..++.+.|++++|+..++++++.. +.+..++..+...+.+.|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 6777777777777777777777766443 55667777777777777777777777777654 556777777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
++++|...++++.+.. +.+..++..++..+.+.|++++|.+.|+++++..+. +...|..+...+...|
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 7888877777777653 455677777777777888888888888877765322 5666666666665554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-29 Score=267.25 Aligned_cols=204 Identities=18% Similarity=0.283 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---------hhH
Q 004791 187 MKRVYLEMLDNMVVPNI-YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD---------VEK 256 (730)
Q Consensus 187 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 256 (730)
+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44444555555444332 34666677777777777777777777777777777777777777765544 345
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
|.++|++|...|+.||.++|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55566666555555566666666666666666666666666665555555666666666666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK 390 (730)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 390 (730)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555566666666666666666666666666666555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-28 Score=261.07 Aligned_cols=207 Identities=18% Similarity=0.275 Sum_probs=168.2
Q ss_pred HHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 004791 502 AQVLFDSLEKKGIKAGE-VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK---------VQE 571 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~~ 571 (730)
+..+.+++.+++....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555544333 35677788888888888888888888888888888888888888876543 678
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCh
Q 004791 652 EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKV 708 (730)
Q Consensus 652 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~ 708 (730)
.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..++..+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999998886543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.8e-25 Score=238.27 Aligned_cols=280 Identities=14% Similarity=0.018 Sum_probs=214.3
Q ss_pred hcHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 414 RTYNELICGFCK---RKNVHRAMSLLNELLE-----QNL--------SPTLITYNSLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 414 ~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
..+..+...+.. .|++++|...++++++ ... +.+...+..++..+...|++++|...++++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444443443 6778888888877776 211 123456777788888888888888888888776
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 478 GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 478 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
... ...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 433 777888888888888888888888888877544 66788888888889999999999999888765 44667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-PD----VYTYTAFIQA 632 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~ 632 (730)
.+...+...|++++|...++++.+.. +.+..++..++..+...|++++|.+.++++.+.... ++ ...+..++.+
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 88888888999999999999888754 446778888888999999999999999888774322 11 3478888888
Q ss_pred HHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004791 633 YCS---IGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIK 701 (730)
Q Consensus 633 ~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 701 (730)
+.. .|++++|.+.++++.+.. +.+..++..++.+|...|++++|.+.|+++.+. .|+.......+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 490 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAIT 490 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHHH
Confidence 888 899999999999988753 336788888999999999999999999999875 566655444443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-24 Score=233.45 Aligned_cols=273 Identities=11% Similarity=-0.036 Sum_probs=219.9
Q ss_pred hhhHHHHHHHHHh---CCCHHHHHHHHHHHHh-----CCC--------CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 378 VVTYNALIDGYCK---EGLMEAALQILDLMKS-----NNC--------SPNARTYNELICGFCKRKNVHRAMSLLNELLE 441 (730)
Q Consensus 378 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 441 (730)
...+..+...+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444554 7888888888888876 311 12345677788888899999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH
Q 004791 442 QNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIY 521 (730)
Q Consensus 442 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 521 (730)
.... ...+..++..+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+..+. +...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHH
Confidence 6533 77888888999999999999999999887643 35667888888999999999999999999887654 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV-KPT----VYTYTILIE 596 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~ 596 (730)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+... .++ ...+..++.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 889999999999999999999988764 45677888899999999999999999999886421 111 348888999
Q ss_pred HHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 597 EVLK---EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 597 ~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
.+.. .|++++|.+.++++++... .+..++..++.+|.+.|++++|.+.++++.+. .|+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 9999 9999999999999988653 36788899999999999999999999999984 4653
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.2e-23 Score=224.75 Aligned_cols=441 Identities=14% Similarity=0.046 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHH
Q 004791 204 YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGL 283 (730)
Q Consensus 204 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 283 (730)
..+..+...+.+.|++++|...|+++++..+ .+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3455555556666666666666666655432 244555555555555555555555555555432 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHH
Q 004791 284 CEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC--EPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~ 361 (730)
...|++++|.+.|+.+ ... |+. ....+..+...+...+|...++++....+ .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 5555555555555422 111 111 11112223333334445555554433210 0011111222223333333333
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 362 ASELLNRMLEKGLFPN-VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
+...+...... .+. ......+...+...+ .......|++++|..++++++
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHH
Confidence 33222221111 000 001111111111110 000001124555555555555
Q ss_pred HCCCCCC-------hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 441 EQNLSPT-------LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKG 513 (730)
Q Consensus 441 ~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 513 (730)
+.... + ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+..
T Consensus 230 ~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 43211 1 1234444555556666666666666665542 335555556666666666666666666666554
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 514 IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI 593 (730)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 593 (730)
+. +..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 307 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 PE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 33 45566666666666666666666666666543 3344566666666666666666666666666543 344556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLK-----PDVYTYTAFIQAYCSI----------GKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
+...+...|++++|.+.|+++++.... .....+..+..++... |++++|...++++.+.. +.+.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 462 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSE 462 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCH
Confidence 666666666666666666666553110 1122233444555555 66777777777766643 2345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.++..++.+|...|++++|.+.|++.++.
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666667777777777777777776654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.7e-22 Score=215.38 Aligned_cols=314 Identities=15% Similarity=0.105 Sum_probs=157.6
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLI 350 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 350 (730)
.+...+..++..+.+.|++++|+++|+++.+.. +.+..+|..++.++...|++++|++.|+++.+.++. +..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 344555556666666666666666666655442 334555555666666666666666666665554332 455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcC
Q 004791 351 DCLCKENKVDEASELLNRMLEKGLFPNV---VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427 (730)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 427 (730)
.+|.+.|++++|...|+++.+.... +. ..+..++..+... .+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 5555555555555555555553211 22 3333333321110 1112233345556
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 428 NVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFD 507 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 507 (730)
++++|+..++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665532 2345555566666666666666666666655432 2245555556666666666666666666
Q ss_pred HHHHcCCCcCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 004791 508 SLEKKGIKAGEVIYTAL------------IDGYCKEGKIDDAHSLLERMLSDDCLPN-----SYTYNALIDGLYRERKVQ 570 (730)
Q Consensus 508 ~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~ 570 (730)
++.+..+. +...+..+ +..+.+.|++++|+..|+++++.. |+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHH
Confidence 66554322 22233222 444444555555555555544432 22 223444444444455555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 571 EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 571 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+|+..++++.+.. +.+..+|..++.+|...|++++|.+.++++++
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555554444432 22344444444444455555555555544444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3.6e-22 Score=212.75 Aligned_cols=387 Identities=15% Similarity=0.073 Sum_probs=285.2
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 291 EALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 291 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
.+...+.+....+ +.+...+..++..+.+.|++++|+.+|+++.+..+. +..++..++.++...|++++|...|++++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455554443 456677788888888888888888888888776433 67778888888888888888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 371 EKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA---RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT 447 (730)
Q Consensus 371 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (730)
+.+.. +..++..++..|.+.|++++|.+.|+++.+.+ +.+. ..+..++..+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH----------------------
Confidence 76433 56777778888888888888888888877653 2223 444444443211
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
..+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+..+. +..++..++.+
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 123344556788999999999999998864 347888999999999999999999999999887544 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNAL------------IDGLYRERKVQEALLLVEKMTKMGVKPT-----VYT 590 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~ 590 (730)
|...|++++|+..++++.... +.+...+..+ ...+.+.|++++|...|+++.+.. |+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 999999999999999998765 4455555555 788999999999999999999853 43 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH--
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICA-- 667 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~-- 667 (730)
+..++.++.+.|++++|++.++++++..+ .+...|..++.+|...|++++|...++++.+. .| +...+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 88899999999999999999999988642 37889999999999999999999999999984 45 56777777633
Q ss_pred ----------HHhcC-----CHHHHHHHHHHH-HHcCCCCC----H-------HHHHHHHHHHHcCChhhhhhh
Q 004791 668 ----------YAHLG-----LIYSAFDVLKRM-FDAGCEPS----H-------HTYAFLIKHLSNKKVDERKQQ 714 (730)
Q Consensus 668 ----------~~~~g-----~~~~A~~~~~~m-~~~g~~p~----~-------~~~~~l~~~l~~~~~~e~~~~ 714 (730)
|...| +.+++.+.|+++ ++. .|| . ..+..+..++-..++.+..+.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 43444 567778888874 332 333 1 255666666666666655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.4e-22 Score=216.68 Aligned_cols=442 Identities=10% Similarity=0.029 Sum_probs=264.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
....|..+...+.+.|++++|+..|+++++.. +.+..++..+..+|.+.|++++|+..|+++++.++ .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 46778899999999999999999999999864 34778999999999999999999999999998753 46888999999
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD--CRPTVRTYTVVIFGLCRVGRK 324 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~ 324 (730)
.+.+.|++++|...|+.+.. . |+ .....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-N--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc-C--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974432 1 22 22334556667777889999999997642 111122233445556667777
Q ss_pred HHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH
Q 004791 325 SEALEFFNEMSARGCEPNVH-TYTVLIDCLCKE--------NKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME 395 (730)
Q Consensus 325 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 395 (730)
+.+...+...... .+... ....+...+... |++++|..+++++.+.... +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 7766655443321 11111 223333322221 3556666666666554221 21111100
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 004791 396 AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLIN 475 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 475 (730)
..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 1122233333444444455555444444432 234444445555555555555555555554
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004791 476 ESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYT 555 (730)
Q Consensus 476 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 555 (730)
+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+..++...|++++|...++++.+.. +.+...
T Consensus 304 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 432 123445555555666666666666666666555433 44556666666666666666666666666543 344556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCC
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMG-----VKPTVYTYTILIEEVLKE----------GDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 620 (730)
+..+...+...|++++|...++++.+.. .......+......+... |++++|...|+++++..+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP- 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-
Confidence 6666666666667777766666665421 111122233444556666 777777777777776543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 621 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.+...+..++.+|.+.|++++|.+.|+++.+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 25667777777777777777777777777763
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=3.3e-18 Score=183.83 Aligned_cols=351 Identities=13% Similarity=0.051 Sum_probs=180.1
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 004791 272 NEVSYTNLIHGLCE----AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR----VGRKSEALEFFNEMSARGCEPNV 343 (730)
Q Consensus 272 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 343 (730)
+..++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555556666655 566666666666665543 44555556666655 566666666666665543 44
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCChhc
Q 004791 344 HTYTVLIDCLCK----ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK----EGLMEAALQILDLMKSNNCSPNART 415 (730)
Q Consensus 344 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 415 (730)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555555 556666666666655543 44455555555554 455566666665555543 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHhHH
Q 004791 416 YNELICGFCK----RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCR----EGHLDSAYKVLHLINESGLVPDQFTYS 487 (730)
Q Consensus 416 ~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (730)
+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5555555554 555555555555555543 33444445555443 455555555555555432 233444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 488 VFIDTLCK----RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE-----GKIDDAHSLLERMLSDDCLPNSYTYNA 558 (730)
Q Consensus 488 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ 558 (730)
.+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|+..+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44444444 455555555555554443 333444444444444 45555555555554443 2334444
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 559 LIDGLYRER---KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 559 li~~~~~~~---~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...|...| +.++|+++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444333 4445555555554432 34444444444444 445555555555554432 2334444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHHC
Q 004791 632 AYCS----IGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 632 ~~~~----~g~~~~A~~~~~~m~~~ 652 (730)
.|.. .+++++|..+|++..+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444 44555555555555543
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=9.7e-18 Score=180.16 Aligned_cols=351 Identities=15% Similarity=0.102 Sum_probs=158.2
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCh
Q 004791 237 DTFTYTSLILGYCR----NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE----AKRVDEALDLFRRMGEDDCRPTV 308 (730)
Q Consensus 237 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 308 (730)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 444555555554444432 33444444444444 444555555555444433 33
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhh
Q 004791 309 RTYTVVIFGLCR----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK----ENKVDEASELLNRMLEKGLFPNVVT 380 (730)
Q Consensus 309 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~ 380 (730)
..+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444444444444 444555555554444432 33344444444443 444555555555444432 3444
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004791 381 YNALIDGYCK----EGLMEAALQILDLMKSNNCSPNARTYNELICGFCK----RKNVHRAMSLLNELLEQNLSPTLITYN 452 (730)
Q Consensus 381 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (730)
+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4444444444 444555555554444432 33344444444443 444555555555444432 233344
Q ss_pred HHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 004791 453 SLIYGQCR----EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR-----GRVEEAQVLFDSLEKKGIKAGEVIYTA 523 (730)
Q Consensus 453 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 523 (730)
.+...+.. .++.++|++.|++..+.| +...+..+...|... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44444444 444555555554444432 233334444444443 44555555555444443 2334444
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 524 LIDGYCKEG---KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 524 li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...|.+.| +.++|+.+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444433 4444555555444432 34444444444444 444555555555444432 2334444444
Q ss_pred HHHH----cCCHHHHHHHHHHHHHC
Q 004791 597 EVLK----EGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 597 ~~~~----~g~~~~A~~~~~~~~~~ 617 (730)
.|.. .+++++|.+.|++..+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444 44555555555554443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=8.5e-19 Score=180.24 Aligned_cols=343 Identities=14% Similarity=0.043 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDC 352 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 352 (730)
+..+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|++++|+..|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555555556666666666665555443 234455555555555555555555555555554322 44455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHH
Q 004791 353 LCKENKVDEASELLNRMLEKGLF--PNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVH 430 (730)
Q Consensus 353 ~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 430 (730)
+...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555555543210 01222222211000 001111233344444444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 431 RAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLE 510 (730)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 510 (730)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444331 1233344444444444444444444444444332 1233344444444444444444444444444
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--
Q 004791 511 KKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV-- 588 (730)
Q Consensus 511 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-- 588 (730)
+..+. +...+..+.. +. .......+...+.+.|++++|...++++.+.. +.+.
T Consensus 216 ~~~~~-~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 270 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEY 270 (359)
T ss_dssp HHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHH
T ss_pred hhCcc-chHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHH
Confidence 33221 1111111000 00 00011123445666677777777777766543 2222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 589 --YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLI 665 (730)
Q Consensus 589 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 665 (730)
..+..+..++...|++++|.+.++++++..+ .+..+|..++.++...|++++|.+.++++.+. .| +...+..+.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 347 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 2244466677777777777777777776532 25667777777777777777777777777764 34 355566665
Q ss_pred HHHHh
Q 004791 666 CAYAH 670 (730)
Q Consensus 666 ~~~~~ 670 (730)
.+...
T Consensus 348 ~~~~~ 352 (359)
T 3ieg_A 348 KAQRL 352 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.4e-19 Score=180.72 Aligned_cols=214 Identities=12% Similarity=-0.011 Sum_probs=143.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
|+..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.+ +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888999999999999999999998754 4568899999999999999999999999998864 446789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCE--PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLM 394 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 394 (730)
.+...|++++|.+.|+++.+..+. .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999986431 13444444421100 01122233444555555
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 395 EAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 395 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 2344445555555555555555555555555432 224455555555555666666666666555
Q ss_pred HhC
Q 004791 475 NES 477 (730)
Q Consensus 475 ~~~ 477 (730)
.+.
T Consensus 215 ~~~ 217 (359)
T 3ieg_A 215 LKL 217 (359)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=2e-16 Score=176.81 Aligned_cols=534 Identities=14% Similarity=0.130 Sum_probs=329.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHccc---ChhhHH--HHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcC
Q 004791 108 SVESYSSLLNLLIRNNFTKASEKIVFLMLKSCS---LDKEIL--FVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFH 182 (730)
Q Consensus 108 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (730)
++.--...++.+...|.+.+|..+++.++.... .+.+.. .++..++.-...+.++....+-.....+...+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 333344556666677777777777776663322 111111 111111110000000001112222445677788899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 183 LVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
++++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|++.|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999987521 1222233322 668899999888866 246788899999999999999999996
Q ss_pred hchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 263 MMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN 342 (730)
Q Consensus 263 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 342 (730)
+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|.+.+++++...+ ++ .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCC
Confidence 64 567788889999999999999999998877764 3333344588899999888854333 22 346
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH
Q 004791 343 VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICG 422 (730)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 422 (730)
...|..+...|...|++++|..+|... ..|..++..|++.|++++|.+.+++.. +..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 667778999999999999999999885 378889999999999999999998763 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CCHH
Q 004791 423 FCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR--GRVE 500 (730)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~ 500 (730)
|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +.....|..+...+++. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 999999888887765432 356667788999999999999999998877654 33445566666666653 4555
Q ss_pred HHHHHHHHHHHcCC----CcCHHHHHHHHHHHHhcCChhHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHH
Q 004791 501 EAQVLFDSLEKKGI----KAGEVIYTALIDGYCKEGKIDDAHSLL-------------ERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 501 ~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~~~~~~~li~~~ 563 (730)
++.++|..-..... --+...|..++..|.+.|+++.|.... ...+. ...|...|...+..|
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHH
Confidence 66666654332100 014567889999999999999887322 22221 134666666666666
Q ss_pred HhcC---------------CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 004791 564 YRER---------------KVQEALLLVEKMTKM----------GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL- 617 (730)
Q Consensus 564 ~~~~---------------~~~~A~~~~~~m~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 617 (730)
.... +.+++.++|.+.-.. ....+...-..+.+.+...++++.-+.-.+..-..
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd 1491 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 1491 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcC
Confidence 6544 566666555521100 00112222223333333333333221111111000
Q ss_pred ------CC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 618 ------GL-KPDVYTYTAFI-QAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 618 ------~~-~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+ +-+..-+..+. ..|.+.|+|+.|.+++++... |.-.+....++|+.+.+.+++.-..+.|
T Consensus 1492 ~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S~d~e~~e~ll~~F~~~~- 1561 (1630)
T 1xi4_A 1492 NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASESKDTELAEELLQWFLQEE- 1561 (1630)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 00 01121223333 334455888888877765432 3344566777788877777777666542
Q ss_pred CCCHHHHHHHHHHHHc
Q 004791 690 EPSHHTYAFLIKHLSN 705 (730)
Q Consensus 690 ~p~~~~~~~l~~~l~~ 705 (730)
+..+|...+-.++.
T Consensus 1562 --~~E~f~a~Ly~cy~ 1575 (1630)
T 1xi4_A 1562 --KRECFGACLFTCYD 1575 (1630)
T ss_pred --ChhHHHHHHHHHhc
Confidence 33445544444433
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2e-17 Score=179.69 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCK-------RGRVE-------EAQVLFDSLEKKGIKAGEVIYTALIDGYCKE 531 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 531 (730)
++..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777766642 3356677777766664 67766 8888888888621233677888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 004791 532 GKIDDAHSLLERMLSDDCLPNS-YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE-VLKEGDFDHAHR 609 (730)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 609 (730)
|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..
T Consensus 335 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 99999999999888854 2233 578888888888889999999999888753 2233333332222 336899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVP--DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+|++.++..+ .+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+.++++++.+
T Consensus 413 ~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 413 IFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999888643 267888899999999999999999999998863 122 245788888888888999999999998876
Q ss_pred c
Q 004791 687 A 687 (730)
Q Consensus 687 ~ 687 (730)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=3.3e-17 Score=177.86 Aligned_cols=429 Identities=11% Similarity=0.060 Sum_probs=230.8
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004791 226 VSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR 305 (730)
Q Consensus 226 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 305 (730)
|++.++.. +-|...|..++. +.+.|++++|+.+|+++.+. .|.+...|..++..+.+.|++++|.++|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555543 336777888887 46778888888888888763 45567778888888888888888888888887764
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 004791 306 PTVRTYTVVIFGL-CRVGRKSEALE----FFNEMSAR-GCEP-NVHTYTVLIDCLCK---------ENKVDEASELLNRM 369 (730)
Q Consensus 306 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 369 (730)
|+...|...+... ...|+.++|.+ +|+..+.. |..| +...|...+....+ .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5766777666433 34566666554 56555432 4333 34566666665543 56667777777776
Q ss_pred HHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 004791 370 LEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI 449 (730)
Q Consensus 370 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 449 (730)
++.........|..........|. .+...++. ...+++.+|..++.+....
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~------- 207 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETV------- 207 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHH-------
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHH-------
Confidence 662100001222221111000000 00000000 0111222232222221000
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCC---CCCC--------HHhHHHHHHHHHh----cCCH----HHHHHHHHHHH
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINESG---LVPD--------QFTYSVFIDTLCK----RGRV----EEAQVLFDSLE 510 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--------~~~~~~li~~~~~----~g~~----~~A~~~~~~~~ 510 (730)
....+.. +.|+ ...|...+..... .++. +++..+|++++
T Consensus 208 ----------------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 208 ----------------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp ----------------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 0000000 1111 1222222221111 1121 35566666666
Q ss_pred HcCCCcCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 511 KKGIKAGEVIYTALIDGYCK-------EGKID-------DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 511 ~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
...+. +...|..++..+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|
T Consensus 266 ~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 266 LVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 65332 56666666666654 56665 67777777765222445666777777777777777777777
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 004791 577 EKMTKMGVKPTV-YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA-YCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 577 ~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
+++++.. +.+. ..|..++..+.+.|++++|+++|++.++.... +...|...+.. +...|+.++|..+|++..+..
T Consensus 345 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 345 NRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 7777642 1222 46666666666777777777777777664221 22233222222 234677777777777766632
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHcCChhhhhhh
Q 004791 655 VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC-EPS--HHTYAFLIKHLSNKKVDERKQQ 714 (730)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~l~~~l~~~~~~e~~~~ 714 (730)
+.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22466677777777777777777777777766422 222 3356566666666666555443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-18 Score=174.33 Aligned_cols=269 Identities=10% Similarity=0.010 Sum_probs=123.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 377 NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456 (730)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 456 (730)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++++.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44444555555555555555555555554432 2233444444455555555555555555555432 123444445555
Q ss_pred HHHhCC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChh
Q 004791 457 GQCREG-HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKID 535 (730)
Q Consensus 457 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 535 (730)
.+...| ++++|.+.++++.+... .+...+..+...+...|++++|...++++.+..+. +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 55555555555544321 12334444445555555555555555555444322 2333444455555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 536 DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG--------VKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 536 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554433 3334444444444555555555555554444310 011233444444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+.++++.+.... +...+..+..++...|++++|.+.++++.+
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4444444443211 333444444444444444444444444443
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.6e-18 Score=174.41 Aligned_cols=285 Identities=11% Similarity=-0.038 Sum_probs=130.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 272 NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLID 351 (730)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 351 (730)
+...+..++..+...|++++|.++|+++.+.+ +.+...+..++..+...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 34444445555555555555555555554432 223344444445555555555555555555544322 3444555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHH
Q 004791 352 CLCKEN-KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVH 430 (730)
Q Consensus 352 ~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 430 (730)
.+...| ++++|...|+++.+.... +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555443221 34444555555555555555555555544432 222334444444445555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC--------CCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 431 RAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESG--------LVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
+|...++++++.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555544432 2233444444444555555555555544443311 011223444444444444444444
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
...++++.+..+. +...+..+..+|.+.|++++|...+++.++.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 4444444443322 33444444444444444444444444444432 22333444444333
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=6.6e-15 Score=164.77 Aligned_cols=280 Identities=15% Similarity=0.126 Sum_probs=128.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004791 285 EAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASE 364 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 364 (730)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555554331 2344555555555555555555555332 144445555555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 365 LLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL 444 (730)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 444 (730)
.|....+.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 555444432 12222223555555555554322221 1 223344444555555555555555555543
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 004791 445 SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL 524 (730)
Q Consensus 445 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 524 (730)
..|..++..+++.|++++|.+.+++.. +..+|..+..+|...|++..|......+. .+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHH
Confidence 245555555555555555555554431 33445555555555555555544433211 133344455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR--ERKVQEALLLVEKMTKMGVKP------TVYTYTILIE 596 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~~------~~~~~~~l~~ 596 (730)
+..|.+.|.+++|+.+++..+..+ +-....|.-+...|++ .++..++.++|..-.. +++ +...|.-++.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHH
Confidence 555555555555555555554433 2233334333333332 2333444444432221 111 3344555555
Q ss_pred HHHHcCCHHHHH
Q 004791 597 EVLKEGDFDHAH 608 (730)
Q Consensus 597 ~~~~~g~~~~A~ 608 (730)
.|.+.|+++.|.
T Consensus 1364 LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1364 LYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhcccHHHHH
Confidence 555555555554
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.1e-18 Score=176.91 Aligned_cols=279 Identities=10% Similarity=-0.049 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQ 458 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 458 (730)
..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..++..+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555442 2334444555555555555555555555554432 22344455555555
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 459 CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
...|++++|.+.++++.+.... +...+..+.. ... . .. ....+..+...+ ..|++++|+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-------~----~~-~~~~~~~~~~~~-~~~~~~~A~ 201 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-------G----AG-LGPSKRILGSLL-SDSLFLEVK 201 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CTTHHHH-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-------h----hc-ccHHHHHHHHHh-hcccHHHHH
Confidence 5555555555555555443211 1111100000 000 0 00 000111122222 566667777
Q ss_pred HHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 539 SLLERMLSDDCLP--NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 539 ~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
..++++++.. +. +..++..+...+...|++++|+..++++.+.. +.+..++..++..+...|++++|++.|+++++
T Consensus 202 ~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 202 ELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777666654 22 46666677777777777777777777766643 34566777777777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-----------SVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 617 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
..+ .+...+..++.+|.+.|++++|...++++.+.. +.+ ..+|..++.+|...|+.++|..++++.
T Consensus 280 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 280 LQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 532 256677777777777777777777777776532 111 567777777777778877777776544
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=7.4e-18 Score=174.06 Aligned_cols=307 Identities=14% Similarity=0.039 Sum_probs=148.0
Q ss_pred HHHhcCCHHHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004791 282 GLCEAKRVDEALD-LFRRMGEDDC---RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN 357 (730)
Q Consensus 282 ~~~~~g~~~~A~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 357 (730)
++...|++++|.+ .|++...... ..+...+..+...+.+.|++++|+..|+++.+..+. +..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3444555555555 5554433210 112344555555555555666666655555554332 4455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 004791 358 KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLN 437 (730)
Q Consensus 358 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 437 (730)
++++|...|+++.+.... +..++..++..|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~--------------- 175 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG--------------- 175 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH---------------
Confidence 555555555555554321 44455555555555555555555555555432 1111111110000
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-
Q 004791 438 ELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA- 516 (730)
Q Consensus 438 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~- 516 (730)
... . .+. ..+..+. .+...|++++|...++++.+..+..
T Consensus 176 ---------------------------~~~-------~----~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 176 ---------------------------AGG-------A----GLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp -------------------------------------------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ---------------------------hhh-------h----ccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 000 0 000 0001111 1124455555555555555543221
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+..++..+...|.+.|++++|+..+++++... +.+..++..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34555555666666666666666666655543 3345566666666666666666666666665543 345556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKP----------DVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
++.+.|++++|.+.|+++++..... ...+|..+..+|...|++++|..++++
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6666666666666666665532111 145667777777777777777666554
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.3e-18 Score=173.13 Aligned_cols=353 Identities=15% Similarity=0.122 Sum_probs=112.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 275 SYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLC 354 (730)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 354 (730)
+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 4444444444444444444444321 23334444444444444444444433333331 223344444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 004791 355 KENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMS 434 (730)
Q Consensus 355 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 434 (730)
+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+ ..|..++.++.+.|++++|.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence 4444444444442 133344444455555555555555544433 234445555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 435 LLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI 514 (730)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 514 (730)
.+.++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++......
T Consensus 170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 55444 1344455555555555555555332222 11122223344455555555555555555554443
Q ss_pred CcCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 004791 515 KAGEVIYTALIDGYCKE--GKIDDAHSLLERMLSDDCLP------NSYTYNALIDGLYRERKVQEALLLVEKMTKMG--- 583 (730)
Q Consensus 515 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--- 583 (730)
+-....|+.|.-+|++- ++..+.+++|..- .+++| +...|..+...|.+.++++.|... |.++-
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a 312 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDA 312 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhh
Confidence 22344444444444432 2222233322211 11111 223455555555555555555442 22210
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 584 -----------VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 584 -----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
-..+...|...+..|.. ....++.-+...+.. +.|. +..+..+.+.|.+.-+..+++.+...
T Consensus 313 ~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~--~ld~---~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 313 WKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSP--RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGG--GCCH---HHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred hhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHh--ccCc---HHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 01234444444444441 111222222222211 1121 33444556666666666666666643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 653 GIVPDSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 653 g~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
+ +..+-.++-..|....+++.-.
T Consensus 386 n---~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 386 N---NKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred h---HHHHHHHHHHHHHhhhhHHHHH
Confidence 2 4444555556666666664433
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.5e-18 Score=175.49 Aligned_cols=266 Identities=8% Similarity=-0.061 Sum_probs=180.9
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004791 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDT 492 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 492 (730)
...+..+...+.+.|++++|...|+++++.. +.+..+|..++..+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666666666666666666543 2355566666666777777777777776666543 2245666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKA---------GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP--NSYTYNALID 561 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~ 561 (730)
|...|++++|...++++.+..+.. ....+..+...+.+.|++++|+..++++++.. +. +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 777777777777777766543210 12233445777888888888888888888765 23 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.+...|++++|+..++++.+.. +.+..+|..++.+|...|++++|++.|+++++..+. +..+|..++.+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888754 456788888888888888888888888888876432 57788888888888888888
Q ss_pred HHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGI---V--------PDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 642 A~~~~~~m~~~g~---~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
|...++++.+..- . .+...|..+..++...|+.+.+.+..++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888876320 0 0256788888888888888887776654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.3e-17 Score=167.69 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=98.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFR 259 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 259 (730)
+.|++++|...++++- +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4466777777776662 2236777777777777777777777542 455567777777777777777777
Q ss_pred HHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 260 VFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC 339 (730)
Q Consensus 260 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (730)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655552 2445666777777777777777666653 255567777777777777777777777654
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHH
Q 004791 340 EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNEL 419 (730)
Q Consensus 340 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 419 (730)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 35677777777777777777777766 166677777777777777777744433322 222234456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCC------CHHhHHHHHH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREG--HLDSAYKVLHLINESGLVP------DQFTYSVFID 491 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~------~~~~~~~li~ 491 (730)
+..|.+.|.+++|+.+++..+... +-....|+-|...|++-. +..+.++.|.. +.+++| +...|..++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 666777777777777777666543 334455555555555432 23333333321 011111 2345566666
Q ss_pred HHHhcCCHHHHHH
Q 004791 492 TLCKRGRVEEAQV 504 (730)
Q Consensus 492 ~~~~~g~~~~A~~ 504 (730)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.5e-17 Score=171.44 Aligned_cols=277 Identities=10% Similarity=-0.058 Sum_probs=137.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALID 386 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 386 (730)
+...|..++..+.+.|++++|++.|+++.+..+. +..++..+...+...|++++|+..|+++++... .+..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 3445666666666666777777766666665433 566666666666666777777777666666532 24566666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 004791 387 GYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466 (730)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 466 (730)
.|...|++++|.+.|+++.+.. +.+...+..+. .....+..+...+...|++++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 6666666666666666665532 11111111110 011112223333444444444
Q ss_pred HHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 467 AYKVLHLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 467 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
|.+.++++.+.... .+..++..+...+...|++++|...++++.+..+. +..+|..+..+|.+.|++++|+..+++++
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433211 13444444444444555555555555554444322 34455555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004791 546 SDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV-----------KPTVYTYTILIEEVLKEGDFDHAHRLLDQ 613 (730)
Q Consensus 546 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (730)
+.. +.+..++..+...|.+.|++++|...|+++.+... ..+..+|..+..++...|+.+.+..+.++
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 443 23345555555555555555555555555543210 00245566666666666666666655543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.2e-16 Score=166.89 Aligned_cols=298 Identities=12% Similarity=0.014 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFG---LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK----ENKVD 360 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 360 (730)
++++|++.|++..+.+ +.+...+..+... +...++.++|++.+++.++.++. +..++..+...+.. .|+++
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHH
Confidence 4556666665555443 2233333333333 22345555566666555554332 34444444433332 34455
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 361 EASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 361 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
+|.+.+++....... +..++..+...|.+.|++++|.+.+++..+.. +.+..++..+...|...+... .
T Consensus 231 ~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~ 299 (472)
T 4g1t_A 231 EGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------M 299 (472)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------h
Confidence 666666665554322 44555556666666666666666666655542 223444444444332211000 0
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--
Q 004791 441 EQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE-- 518 (730)
Q Consensus 441 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 518 (730)
... ...........+..+.|...++...+... .+...+..+...+...|++++|...|+++.+..+.+..
T Consensus 300 ~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 300 NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 000 00000001111224455555555554321 23344555566666666666666666666655433221
Q ss_pred HHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 519 VIYTALID-GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 519 ~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
..+..+.. .+...|+.++|+..+++.++.. |+..... +....+.+++++.++.. +.+..+|..++..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 11222222 2345667777777777776653 3322211 12233444555555543 4566777777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCC
Q 004791 598 VLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~ 618 (730)
|...|++++|++.|+++++.+
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC-------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 888888888888888777754
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-15 Score=163.49 Aligned_cols=385 Identities=14% Similarity=0.008 Sum_probs=245.3
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN-----M--VVP-NIYTFNTMINGCCKVGNVGEAELYVSKIVQAG---- 233 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g---- 233 (730)
..+..||.+...+...|++++|+..|+++++. + ..| ...+|+.+..+|...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44678999999999999999999999998753 1 123 45689999999999999999999999886531
Q ss_pred --CC-CCHHhHHHHHHHHHh--cCChhHHHHHHHhchhCCCCcChhhHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 004791 234 --LS-PDTFTYTSLILGYCR--NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHG---LCEAKRVDEALDLFRRMGEDDCR 305 (730)
Q Consensus 234 --~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 305 (730)
.. ....++..+..++.+ .+++++|+..|++..+.. |.+...+..+..+ +...++.++|++.|++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 124556655555554 457999999999998754 3455666666555 345688899999999988765 4
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 004791 306 PTVRTYTVVIFGLCR----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTY 381 (730)
Q Consensus 306 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 381 (730)
.+..++..+...+.. .|++++|.+.+++.....+. +..++..+...|...|++++|...+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 456667666655554 46788999999999887544 7788999999999999999999999999987433 56677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 004791 382 NALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCRE 461 (730)
Q Consensus 382 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 461 (730)
..+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 777766643211110 000 0000001111233566777777776643 23455677777777788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 462 GHLDSAYKVLHLINESGLVPDQF--TYSVFID-TLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
|++++|.+.|++..+....+... .+..+.. .....|+.++|+..|++.++..+. ..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHH
Confidence 88888888887777654332211 1222222 234567788888888887776432 22111 1223444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 539 SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
.++++.+..+ +.+..+|..+...|...|++++|++.|++.++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555544 5566778888888888888888888888887754
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.3e-16 Score=161.66 Aligned_cols=279 Identities=9% Similarity=-0.021 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQ 458 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 458 (730)
..+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 334445555555555555555555554432 2234444455555555555555555555554432 12334444444444
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-HH-HHHhcCChhH
Q 004791 459 CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL-ID-GYCKEGKIDD 536 (730)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~ 536 (730)
...|++++|.+.++++.+.... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 4444444444444444433211 11111111000 0000001111 22 3667788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 537 AHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 537 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|.+.++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887765 4567788888888888888888888888888754 45677888888888889999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-----------DSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 617 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
... .+...+..++.++...|++++|.+.++++.+..... +...|..++.++...|++++|..++++.+
T Consensus 235 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 643 367788888888889999999999998888743111 36778888888999999999988877543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.7e-16 Score=160.73 Aligned_cols=281 Identities=12% Similarity=0.019 Sum_probs=218.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELIC 421 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 421 (730)
+...+..+...+...|++++|..+|+++.+.... +..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4567788899999999999999999999987543 77889999999999999999999999998864 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcCCH
Q 004791 422 GFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID--TLCKRGRV 499 (730)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 499 (730)
.+...|++++|...++++.+.... +...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999986422 22333222111 011111112212 25667788
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 500 EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
++|...++++.+..+. +..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888877544 67788888888889999999999998888765 456788888888999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 580 TKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP-----------DVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
.+.. +.+..++..+...+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8754 4567888889999999999999999999988753321 467888899999999999999988875
Q ss_pred HH
Q 004791 649 MN 650 (730)
Q Consensus 649 m~ 650 (730)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 44
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=181.79 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=71.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHhch---hCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 238 TFTYTSLILGYCRNKDVEKGFRVFMMMP---KKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
..+||+||++||+.|++++|.++|++|. ..|+.||+++||+||++||+.|++++|.++|++|.+.|+.||++||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4566666666666666666666665543 2355566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 315 IFGLCRVGR-KSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 315 i~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666665 355666666666666666666666655443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=8.9e-16 Score=151.69 Aligned_cols=192 Identities=12% Similarity=0.080 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINESGLVP-DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGY 528 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 528 (730)
++..+...+...|+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 33333444444444444444444443332212 222333333444444444444444433 12334444444444
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTY---NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 44455555555444444432 221100 111122223355555555555555442 344555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE-AEDLIVKMNR 651 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 651 (730)
+|.+.|+++++..+. +..++..++..+...|+.++ +.++++++.+
T Consensus 218 eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 218 AAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555554322 44455555555555555543 3455555554
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.4e-15 Score=150.23 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=61.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 284 CEAKRVDEALDLFRRMGEDDCRPT--VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
...|+++.|++.+++....+ |+ ......+.++|...|++++|+..++. ...|+..++..++..+...|+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 33455555555544433321 22 12333344455555555555443322 112234444444444444444555
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 362 ASELLNRMLEKGLFP-NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 362 A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
|.+.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|+.++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555554444433222 233333344444444444444444443 2233334444444444444444444444443
Q ss_pred H
Q 004791 441 E 441 (730)
Q Consensus 441 ~ 441 (730)
+
T Consensus 158 ~ 158 (291)
T 3mkr_A 158 D 158 (291)
T ss_dssp H
T ss_pred h
Confidence 3
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.6e-15 Score=160.17 Aligned_cols=346 Identities=12% Similarity=0.051 Sum_probs=171.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHhchhCCCCcChhhHHHHHHHHHh
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDV---EKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE 285 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 285 (730)
+...+.+.|++++|..+|.+..+.| +...+..|...|...|+. ++|...|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445556667777777777666654 233344455555556666 6777777666652 45555666664544
Q ss_pred cC-----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004791 286 AK-----RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE---ALEFFNEMSARGCEPNVHTYTVLIDCLCKEN 357 (730)
Q Consensus 286 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 357 (730)
.| ++++|++.|++..+.| +...+..+...|...+..++ +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 5667777777777655 23356666666665554333 333333333333 3455666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhc----CCHH
Q 004791 358 KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG---LMEAALQILDLMKSNNCSPNARTYNELICGFCKR----KNVH 430 (730)
Q Consensus 358 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~ 430 (730)
.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| +++...+..|...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 54444433222222211224446666777777777 7777777777777665 44444445555555443 5677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-----CHHHH
Q 004791 431 RAMSLLNELLEQNLSPTLITYNSLIYG-Q--CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-----RVEEA 502 (730)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 502 (730)
+|+..|++.. . .+...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777665 2 344555555554 2 34566666666666666554 4444555554444 33 56666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCK----EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALL 574 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~ 574 (730)
...|++.. .| +...+..|...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 66665555 22 44455555554444 225555555555555544 12233333333332 234555555
Q ss_pred HHHHHHhCC
Q 004791 575 LVEKMTKMG 583 (730)
Q Consensus 575 ~~~~m~~~~ 583 (730)
.|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 555555444
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=176.79 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTK---MGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYT 627 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 627 (730)
.-..||++||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456888888888888888888888877654 4678888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 628 AFIQAYCSIGK-LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 628 ~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 88888888887 467888888888888888888888887666553 344444444 3455554
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=2.9e-15 Score=158.21 Aligned_cols=372 Identities=13% Similarity=0.016 Sum_probs=172.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004791 280 IHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRK---SEALEFFNEMSARGCEPNVHTYTVLIDCLCKE 356 (730)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 356 (730)
...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|++.|++..+. +...+..|...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444455555555555544433 222333333344444444 4555555544432 333344444433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC
Q 004791 357 N-----KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME---AALQILDLMKSNNCSPNARTYNELICGFCKRKN 428 (730)
Q Consensus 357 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 428 (730)
| +.++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 4445555555555543 2224444444444433222 2333333333322 33444444555544443
Q ss_pred H----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----C
Q 004791 429 V----HRAMSLLNELLEQNLSPTLITYNSLIYGQCREG---HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR----G 497 (730)
Q Consensus 429 ~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 497 (730)
+ +++..+++.... .+...+..|...|...| +.++|++.|++..+.|. ++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCC
Confidence 2 222333332222 12235555666666666 66666666666666552 2333334444444333 4
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 004791 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDG-Y--CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER-----KV 569 (730)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~ 569 (730)
++++|...|++.. .| +...+..|... | ...+++++|+.+|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 6666777766666 32 44555555555 3 34667777777777766654 5555666666555 33 67
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDE 641 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 641 (730)
++|++.|++.. . .+...+..+...|.. ..++++|.+.|++..+.|. ......|..+|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 77777776665 2 345556666655554 3367777777777766552 2234455555543 346777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
|..++++..+.| .++.......+......++.++|..+.++..
T Consensus 377 A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 377 AYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 777777777665 2222222222222222334555555555543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-14 Score=140.32 Aligned_cols=225 Identities=14% Similarity=0.089 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--C----HHHHH
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA--G----EVIYT 522 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~ 522 (730)
..+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|...++++.+..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666666777777777777666655 456666667777777777777777777766543221 1 46777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG 602 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 602 (730)
.+...|...|++++|+..++++.... |+. ..+...|++++|...++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 78888888888888888888887754 442 34556677888888888888754 445677888888889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 603 DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLK 682 (730)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (730)
++++|.+.++++++.... +...|..++.++...|++++|.+.++++.+.. +.+...|..++.++...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998886533 67888889999999999999999999988854 3458888889999999999999999999
Q ss_pred HHHHc
Q 004791 683 RMFDA 687 (730)
Q Consensus 683 ~m~~~ 687 (730)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=9.5e-15 Score=137.75 Aligned_cols=198 Identities=17% Similarity=0.053 Sum_probs=129.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
+...+..+...+.+.|++++|...|+++++..+. +...+..+..++.+.|++++|+..+++.++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555556666666666666666666665443 55666666666666666666666666666654 445556666666
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 562 GLYRE-----------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFI 630 (730)
Q Consensus 562 ~~~~~-----------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 630 (730)
.+... |++++|+..+++.++.. +.+...+..+...+...|++++|++.|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 88888888888887754 4467777788888888888888888888888766 4777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.+|...|++++|+..++++.+.. +.+...+..++.++...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888743 2357777888888888888888888877653
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.6e-14 Score=137.96 Aligned_cols=222 Identities=13% Similarity=0.059 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CC----HHhHHHH
Q 004791 416 YNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV--PD----QFTYSVF 489 (730)
Q Consensus 416 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 489 (730)
+..+...+...|++++|...++++++.. .+...+..+...+...|++++|.+.++++.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444555555555555544443 34444555555555555555555555544432111 11 3455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 569 (730)
...+...|++++|...++++.+... + ...+.+.|++++|...++++.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666665432 2 133555666777777777777654 33455677777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
++|...++++.+.. +.+..++..++..+...|++++|.+.++++++.... +...|..+..++...|++++|.+.++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888887777654 456777777888888888888888888888775432 5677778888888888888888888887
Q ss_pred HH
Q 004791 650 NR 651 (730)
Q Consensus 650 ~~ 651 (730)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=3.6e-14 Score=133.74 Aligned_cols=199 Identities=17% Similarity=0.020 Sum_probs=135.4
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 525 (730)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++.+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 345556666666666666777776666666543 224556666666667777777777777777666543 556666677
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 526 DGYCKE-----------GKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTIL 594 (730)
Q Consensus 526 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 594 (730)
.++.+. |++++|+..+++.++.. |.+...+..+...+...|++++|+..|+++++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 88888888888888765 4567778888888888888888888888888766 677888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
..++...|++++|+..|+++++..+. +...+..+..++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888876433 67778888888888888888888887654
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=7.1e-12 Score=136.52 Aligned_cols=457 Identities=8% Similarity=0.021 Sum_probs=268.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---hhHH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD---VEKG 257 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A 257 (730)
.....+-+..|++.+...+ -|..+|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|+ ++.+
T Consensus 45 ~~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp -CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 3445666667777776643 47888888888888888888888899888876 45567778888888888888 8888
Q ss_pred HHHHHhchhCC-CCcChhhHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-ChhhHHHHHHHHHh-----
Q 004791 258 FRVFMMMPKKG-CRRNEVSYTNLIHGLCEAKRV--------DEALDLFRRMGE-DDC-RP-TVRTYTVVIFGLCR----- 320 (730)
Q Consensus 258 ~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~----- 320 (730)
.++|++..... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 88888887743 137777888877766665543 234466666554 244 33 34577777665432
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 321 ----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 321 ----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
.++++.+..+|+.++......-..+|......--..+. ..+..++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHH
Confidence 23456677777777643111111222222111111111 1111111111 112333
Q ss_pred HHHHHHHHHh--CCC----CCC-------------------hhcHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCC
Q 004791 397 ALQILDLMKS--NNC----SPN-------------------ARTYNELICGFCKRK-------NVHRAMSLLNELLEQNL 444 (730)
Q Consensus 397 A~~~~~~m~~--~~~----~~~-------------------~~~~~~li~~~~~~~-------~~~~A~~~~~~~~~~~~ 444 (730)
|...+.++.. .++ +.. ...|...+..--..+ ..+.+..+|++++.. +
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 4444433221 011 000 022333333222221 123455667777664 3
Q ss_pred CCChhhHHHHHHHHHhCCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------
Q 004791 445 SPTLITYNSLIYGQCREGHLDSAY-KVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI--------- 514 (730)
Q Consensus 445 ~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------- 514 (730)
+-....|...+..+...|+.++|. +++++.... .+.+...|..++....+.|++++|..+|+.+.+...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446677777777777778777786 888877764 334556666777777778888888888887765310
Q ss_pred Cc------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 004791 515 KA------------GEVIYTALIDGYCKEGKIDDAHSLLERMLSD-DCLPNSYTYNALIDGLYRE-RKVQEALLLVEKMT 580 (730)
Q Consensus 515 ~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~ 580 (730)
.| ...+|...+....+.|..+.|..+|.++++. . ......|...+..-.+. ++.+.|.++|+..+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 02 1235777777777777788888888887765 2 11223333333333333 34778888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 581 KMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 581 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
+. .+.+...+...+......|+.+.|+.+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 64 34456666677777777788888888888877654321 2446777777777778888888888888774 3443
Q ss_pred HHHHHHHHH
Q 004791 659 VTYTLLICA 667 (730)
Q Consensus 659 ~~~~~l~~~ 667 (730)
.....+++-
T Consensus 575 ~~~~~f~~r 583 (679)
T 4e6h_A 575 NKLEEFTNK 583 (679)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333333333
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=3.1e-13 Score=130.85 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=147.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
..+..+...+...|++++|...++++.+..+. +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44555556666667777777777766665433 55667777777777777777777777776654 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
...|++++|.++++++.+.+..| +...+..++..+...|++++|.+.++++.+.... +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77788888888887777622233 4566777777888888888888888887775432 567778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
...++++.+.. +.+...+..++..+...|+.++|.++++++.+. .|+...+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 88888887743 345677777888888888888888888888764 455444433
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.5e-13 Score=140.41 Aligned_cols=248 Identities=10% Similarity=0.063 Sum_probs=200.3
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR-VEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
...|..+...+.+.|++++|++.++++++... -+...|..+..++...|+ +++|+..|+++++..+. +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 34677777888888999999999998887643 357788888888888996 99999999999988765 7888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK-EGDFD 605 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~ 605 (730)
++...|++++|+..|+++++.+ +.+...|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999876 6678889999999999999999999999999876 5678889999999988 56657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 004791 606 HA-----HRLLDQMVSLGLKPDVYTYTAFIQAYCSIG--KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG------ 672 (730)
Q Consensus 606 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------ 672 (730)
+| ++.++++++..+. +...|..+..++...| ++++|++.++++ +.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5889998886543 6778999999998888 689999999888 432 346788889999998874
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHH-HHHHHHHHH
Q 004791 673 ---LIYSAFDVLKRM-FDAGCEPSHHT-YAFLIKHLS 704 (730)
Q Consensus 673 ---~~~~A~~~~~~m-~~~g~~p~~~~-~~~l~~~l~ 704 (730)
..++|+++++++ .+ +.|...- |..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 358999999998 55 4676544 444544444
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2.1e-12 Score=126.75 Aligned_cols=224 Identities=13% Similarity=-0.030 Sum_probs=164.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK----RGRVEEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555666666666677777777777666632 44556666666666 777777777777777664 566677
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 523 ALIDGYCK----EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALLLVEKMTKMGVKPTVYTYTIL 594 (730)
Q Consensus 523 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 594 (730)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 778888888887777764 56677777777777 788888888888887754 55667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 595 IEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 595 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
...|.. .+++++|.+.|++..+.+ +...+..+..+|.. .+++++|.+.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888887753 45677778888888 888888888888888754 3667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 004791 667 AYAH----LGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 667 ~~~~----~g~~~~A~~~~~~m~~~g 688 (730)
.|.. .|++++|.++|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888887764
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=3.1e-13 Score=132.61 Aligned_cols=229 Identities=11% Similarity=0.070 Sum_probs=99.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhc
Q 004791 419 LICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVP--DQFTYSVFIDTLCKR 496 (730)
Q Consensus 419 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 496 (730)
....+...|++++|+..++++++.. +.+...+..+...+...|++++|++.++++.+.+..+ ....+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444432 1122234444444444444444444444444421111 112244444444555
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
|++++|...++++.+..+. +..++..+...|...|++++|+..+++.++.. +.+...+..+...+...+++++|.+.|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444322 33445555555555555555555555554442 333444444442222233555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 577 EKMTKMGVKPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLG-LKPD------VYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 577 ~~m~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
+++++.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|.+.+
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555432 2234444444444444444 444444444444321 0011 123444444445555555555555
Q ss_pred HHHHH
Q 004791 647 VKMNR 651 (730)
Q Consensus 647 ~~m~~ 651 (730)
+++.+
T Consensus 245 ~~al~ 249 (272)
T 3u4t_A 245 KNILA 249 (272)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=2e-13 Score=134.01 Aligned_cols=244 Identities=11% Similarity=-0.000 Sum_probs=199.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG--EVIYTALI 525 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li 525 (730)
...+......+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+....++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556678889999999999999999988643 2455888888999999999999999999998432222 33588999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
..+...|++++|+..+++..+.. +.+..++..+...+...|++++|+..+++.++.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5567899999999999999999999999998874 557788888884555567999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREG-IVPD------SVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~~~------~~~~~~l~~~~~~~g~~~ 675 (730)
+|.+.|+++++..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999986433 57788889999998888 888999999988631 1133 267888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH
Q 004791 676 SAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 676 ~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
+|.+.++++++. .|+.....
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~ 258 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHH
Confidence 999999999985 56655444
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=4.9e-13 Score=126.82 Aligned_cols=211 Identities=13% Similarity=0.033 Sum_probs=149.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...++++.+..+. +...+..+...|...|++++|...++++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445556666667777777777777777665433 45667777777777777777777777777654 4466677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 563 LYRE-RKVQEALLLVEKMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 563 ~~~~-~~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
+... |++++|...++++.+.+..| +...+..++..+...|++++|++.++++.+.... +...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 88888888888777622223 3566777778888888888888888888775432 5677788888888888888
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 641 EAEDLIVKMNREGIV-PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+. .|+......+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 8888888887743 2 45667777777778888888888888887654 4555554443
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=2e-11 Score=132.90 Aligned_cols=441 Identities=12% Similarity=0.043 Sum_probs=296.3
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCC-CCCHHh
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGN---VGEAELYVSKIVQAGL-SPDTFT 240 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~g~-~~~~~~ 240 (730)
+.|...|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|+ ++.+..+|++.+.... .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 578999999999999999999999999999986 44567789999999999999 9999999999998641 378889
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHhchh-CCC-Cc-ChhhHHHHHHHHH---------hcCCHHHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDV--------EKGFRVFMMMPK-KGC-RR-NEVSYTNLIHGLC---------EAKRVDEALDLFRRMG 300 (730)
Q Consensus 241 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 300 (730)
|...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+++.
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877766654 334578887654 354 34 4568888887654 3456788999999998
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---
Q 004791 301 EDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEK--GLF--- 375 (730)
Q Consensus 301 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~--- 375 (730)
......-..+|......-...+. ..+.+++.+ ...+++.|...+.++... ++.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 63211112333322221111111 001111111 112333444444443211 110
Q ss_pred CC--------------------hhhHHHHHHHHHhCC-------CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC
Q 004791 376 PN--------------------VVTYNALIDGYCKEG-------LMEAALQILDLMKSNNCSPNARTYNELICGFCKRKN 428 (730)
Q Consensus 376 ~~--------------------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 428 (730)
|. ...|...+..--..+ ..+.+..+|++..... +-+...|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 00 123444444333322 1234556777776642 4567788888888888888
Q ss_pred HHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC---------CCC------------HHhH
Q 004791 429 VHRAM-SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL---------VPD------------QFTY 486 (730)
Q Consensus 429 ~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~ 486 (730)
.++|. ++|++.+.. ++.+...|...+....+.|++++|.++|+.+.+... .|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88886 999988864 445666677788888889999999999988775310 131 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE-GKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
...+....+.|..+.|+.+|..+.+........+|...+..-.+. ++.+.|..+|+..++. .+.+...|...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777888888899999999999998761122334454444444444 4589999999999886 35577778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVK--PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
.|+.+.|..+|++.+..... .....|...+..-.+.|+.+.+.++.+++.+.-+. ......+++-|
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~--~~~~~~f~~ry 584 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE--VNKLEEFTNKY 584 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT--CCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHh
Confidence 99999999999999986522 14567888888888999999999999999986433 23334444444
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=2e-12 Score=126.86 Aligned_cols=224 Identities=10% Similarity=-0.048 Sum_probs=151.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK----VGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
++.++..+...|.+.|++++|+..|+++.+. .+..++..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556667777777777888888888777773 245566777777777 777777777777777764 566677
Q ss_pred HHHHHHHh----cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 243 SLILGYCR----NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE----AKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 243 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
.+...|.. .+++++|+..|++..+.+ +..++..+...|.. .|++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776643 56667777777776 777777777777776654 45556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 315 IFGLCR----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK----ENKVDEASELLNRMLEKGLFPNVVTYNALID 386 (730)
Q Consensus 315 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 386 (730)
...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 667777777777666653 44556666666666 666777777766666653 2455555666
Q ss_pred HHHh----CCCHHHHHHHHHHHHhCC
Q 004791 387 GYCK----EGLMEAALQILDLMKSNN 408 (730)
Q Consensus 387 ~~~~----~g~~~~A~~~~~~m~~~~ 408 (730)
.|.+ .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=5e-13 Score=136.43 Aligned_cols=214 Identities=11% Similarity=0.051 Sum_probs=97.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 381 YNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKN-VHRAMSLLNELLEQNLSPTLITYNSLIYGQC 459 (730)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 459 (730)
|..+...+.+.|++++|++.++++.+.+ +.+...|+.+...+...|+ +++|+..++++++.. +.+...|+.+...+.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233444444444444443 444444444444432 113444444444455
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCChhHH-
Q 004791 460 REGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK-EGKIDDA- 537 (730)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A- 537 (730)
..|++++|+..|+++++... -+...|..+..++...|++++|+..++++++.++. +...|+.+..++.+ .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHH
Confidence 55555555555555444321 13444444444555555555555555555554433 44455555555555 3333444
Q ss_pred ----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 538 ----HSLLERMLSDDCLPNSYTYNALIDGLYRER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 538 ----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
+..+++.+... +.+...|+.+...+...| ++++|++.+.++ +.. +.+...+..++.+|.+.
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 24444444433 333444554444444444 345555555444 221 33444444455554443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.4e-13 Score=132.37 Aligned_cols=200 Identities=17% Similarity=0.126 Sum_probs=130.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555666667777777777776665433 56666677777777777777777777776654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+... .+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777654 44666777777777788888888888877776542 2566777777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.+.++++.+.. +.+..++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888877643 335777777888888888888888888888764
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.4e-12 Score=126.15 Aligned_cols=202 Identities=13% Similarity=0.046 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567777888888899999999998887754 336778888888899999999999999998887544 67788889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLP-NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 606 (730)
|...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732233 56778888889999999999999999988765 4568888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
|.+.++++.+... .+...+..+...+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999988643 367788888999999999999999999998853
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.2e-13 Score=135.86 Aligned_cols=246 Identities=13% Similarity=-0.009 Sum_probs=137.2
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 426 RKNVHRAMSLLNELLEQNL---SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 426 ~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
.|++++|+..++++++... +.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666665421 1134455566666666666666666666666543 22455666666666666666666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
...++++.+..+. +..++..+..+|.+.|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6666666665433 45566666666666777777777776666643 33333333333444556667777766665553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 583 GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP---DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
. +++...+. ++..+...++.++|.+.++++.+..... +...+..++.+|...|++++|...++++.+. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 2 23333332 4555556666666666666665432110 1355666666777777777777777777663 2421
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222244555666666666554
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.1e-13 Score=135.96 Aligned_cols=197 Identities=13% Similarity=-0.065 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
.+|..+...+...|++++|.+.|+++.+.+ +.+..+|..++..+...|++++|++.|+++.+..+. +..++..+...+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 344444444444444444444444444432 223444444444444445555555554444443222 344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHH
Q 004791 354 CKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAM 433 (730)
Q Consensus 354 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 433 (730)
...|++++|...++++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHH
Confidence 45555555555554444431 222222222233333444455555444443321 1222222 2333344444444444
Q ss_pred HHHHHHHHCCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 004791 434 SLLNELLEQNLS---PTLITYNSLIYGQCREGHLDSAYKVLHLINE 476 (730)
Q Consensus 434 ~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 476 (730)
..+.++.+.... .+...+..+...+...|++++|...++++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444332100 0123334444444444444444444444443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=3e-13 Score=130.08 Aligned_cols=212 Identities=13% Similarity=0.107 Sum_probs=140.6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 33455566666677777777777777766643 235666667777777777777777777777766443 5667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 606 (730)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877754 4566777778888888888888888888877654 4567778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLL 664 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 664 (730)
|.+.++++.+... .+..++..++.+|...|++++|.+.++++.+.. +.+...+..+
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 8888888877643 357778888888888888888888888888743 2244444443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.6e-12 Score=121.70 Aligned_cols=203 Identities=10% Similarity=-0.008 Sum_probs=156.2
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
+...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 44566667777777777777777777776653 234667777777788888888888888888776543 6677888888
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 527 GYCKE-GKIDDAHSLLERMLSDDCLP-NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 527 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888888732223 35677888888888899999999998888754 45678888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 605 DHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999998887654246777777888888899999999999888764
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=2.5e-12 Score=117.69 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+..+|..+...|.+.|++++|+..|++.++.+ |.+..++..+...|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56678888888888888888888888888765 5577788888888888888888888888887754 456777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 676 (730)
.+...++++.|.+.+++..+..+. +...+..+..+|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888876433 67788888888888899999999988888753 3367888888888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 004791 677 AFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~~~ 696 (730)
|++.|++.++. .|+...|
T Consensus 160 A~~~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHT--THHHHHH
T ss_pred HHHHHHHHHhC--CccCHHH
Confidence 99999888873 5655433
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=7.5e-13 Score=138.27 Aligned_cols=301 Identities=15% Similarity=0.074 Sum_probs=171.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-C
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN----VVTYNALIDGYCKEGLMEAALQILDLMKSN----NCSP-N 412 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~ 412 (730)
....+......+...|++++|...|+++.+.+.. + ..++..+...|...|++++|...+++.... +..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4445566666777777777777777777665322 2 245666666677777777777776665432 1011 1
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004791 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLS-PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID 491 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 491 (730)
..++..+...+...|++++|...++++++.... ++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 234444555555555555555555554432000 000 000223444444
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004791 492 TLCKRGR--------------------VEEAQVLFDSLEKK----GI-KAGEVIYTALIDGYCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 492 ~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 546 (730)
.+...|+ +++|...+++..+. +. .....++..+...|...|++++|...+++.++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555 55555555544321 10 11234566677777777777777777777654
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 547 DDC-LPN----SYTYNALIDGLYRERKVQEALLLVEKMTKMG----VKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 547 ~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
... .++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|.+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011 2366677777778888888888887766421 011 145667777788888888888888877765
Q ss_pred CCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 004791 617 LGLK-PD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNRE----GIVP-DSVTYTLLICAYAHLGLI 674 (730)
Q Consensus 617 ~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~ 674 (730)
.... .+ ..++..+..+|...|++++|.+.+++..+. +-.+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3111 11 446677778888888888888888876642 1111 244566666666666655
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=4.1e-13 Score=140.67 Aligned_cols=272 Identities=13% Similarity=0.073 Sum_probs=165.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCChhh
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA----RTYNELICGFCKRKNVHRAMSLLNELLEQ----N-LSPTLIT 450 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~ 450 (730)
.+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...++++++. + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 33445555666666666666666665542 1122 34555555566666666666666555432 0 0111223
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCcCHHHHHHHH
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK----G-IKAGEVIYTALI 525 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li 525 (730)
+..+...+ ...|++++|...++++.+. + ......++..+.
T Consensus 129 ~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 129 SGNLGNTL-----------------------------------KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHHH-----------------------------------HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------------HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 44444444 4445555554444444332 0 011233555566
Q ss_pred HHHHhcCC-----------------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 526 DGYCKEGK-----------------IDDAHSLLERMLSD----DC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 526 ~~~~~~g~-----------------~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
..|...|+ +++|+..+++.++. +. +....++..+...+...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 66666666 66666666655431 10 1123466777777788888888888887776521
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 584 V-KPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-----PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 584 ~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
. ..+ ..++..+...+...|++++|.+.++++++.... ....++..+..+|...|++++|.+.+++..+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 011 236777888888889999999888887763111 124577888889999999999999999887531
Q ss_pred ----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 654 ----IVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 654 ----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
-.+ ...++..++..|...|++++|.+++++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 001 1457788889999999999999999998764
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=5.5e-13 Score=139.68 Aligned_cols=236 Identities=10% Similarity=-0.026 Sum_probs=142.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNI----YTFNTMINGCCKVGNVGEAELYVSKIVQA----GL-SPDTF 239 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~ 239 (730)
..+..+...+...|++++|+..|+++++.... +. .++..+...|...|++++|...++++.+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556667788899999999999999886422 32 46778888888999999999998887653 11 12345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCC-----CCcChhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKG-----CRRNEVSYTNLIHGLCEAKR-----------------VDEALDLFR 297 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 297 (730)
++..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67777788888888888888887765421 11234466677777777777 777777666
Q ss_pred HHhhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 298 RMGED----DC-RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PN----VHTYTVLIDCLCKENKVDEASELLN 367 (730)
Q Consensus 298 ~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~ 367 (730)
+..+. +. +....++..+...+...|++++|++.+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65431 10 111235556666666666666666666665543111 01 1245555556666666666666665
Q ss_pred HHHHCCCC-----CChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 368 RMLEKGLF-----PNVVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 368 ~~~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+..+.... ....++..+...|...|++++|.+.+++..
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55442100 012344445555555555555555554443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=2.8e-11 Score=120.84 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHH-cCCCcCHHHHHHHHHHHH
Q 004791 465 DSAYKVLHLINESGLVPDQFTYSVFIDTLC-------KRGRV-------EEAQVLFDSLEK-KGIKAGEVIYTALIDGYC 529 (730)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 529 (730)
++|..+|+++.... +-+...|..++..+. +.|++ ++|..+|++.++ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45666666666542 234555655555554 34664 788888888877 3332 5667888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSY-TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL-KEGDFDHA 607 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 607 (730)
+.|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++++.. +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888753 22333 77778888888888888888888888754 344444543333322 26888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVP--DSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
.++|+++++..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888875432 67778888888888888888888888888752 344 4667888888888888888888888888
Q ss_pred HHc
Q 004791 685 FDA 687 (730)
Q Consensus 685 ~~~ 687 (730)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=9.8e-12 Score=113.68 Aligned_cols=167 Identities=18% Similarity=0.133 Sum_probs=130.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
+...|..+...+...|++++|+..|++.++..+. +..++..+..+|.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4566777777788888888888888888777654 67778888888888888888888888877654 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|++.|++.++..+. +..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7788888888888888887754 456777888888888888888888888888876433 67788888888888888888
Q ss_pred HHHHHHHHHHC
Q 004791 642 AEDLIVKMNRE 652 (730)
Q Consensus 642 A~~~~~~m~~~ 652 (730)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888888873
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=1.5e-12 Score=136.04 Aligned_cols=240 Identities=11% Similarity=-0.036 Sum_probs=138.5
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN----IYTFNTMINGCCKVGNVGEAELYVSKIVQA----GLSP 236 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~~ 236 (730)
......+......+.+.|++++|+..|+++++.... + ..++..+...+...|++++|...++++... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566677778888888999999999888876322 2 246777888888888888888888876542 1111
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCC-----CcChhhHHHHHHHHHhcCC--------------------HH
Q 004791 237 -DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGC-----RRNEVSYTNLIHGLCEAKR--------------------VD 290 (730)
Q Consensus 237 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~--------------------~~ 290 (730)
...++..+...|...|++++|...+++..+... .....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244566677777778888888777776654210 0013356666677777777 66
Q ss_pred HHHHHHHHHhhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHH
Q 004791 291 EALDLFRRMGED----DC-RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PN----VHTYTVLIDCLCKENKVD 360 (730)
Q Consensus 291 ~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~ 360 (730)
+|.+.+++..+. +. +....++..+...+...|++++|++.+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666654331 10 111234555566666666666666666655432110 01 124555555555666666
Q ss_pred HHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 361 EASELLNRMLEKGLF-PN----VVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 361 ~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+|...+++..+.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 666655555432100 01 2344444555555555555555554443
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3.7e-12 Score=135.26 Aligned_cols=215 Identities=14% Similarity=0.019 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV-EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLE 542 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 542 (730)
++++++.++...... +.+...+..+...+...|++ ++|+..|+++.+..+. +...|..+..+|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555666554432 33666777777778888888 8888888888777544 67788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 004791 543 RMLSDDCLPNSYTYNALIDGLYRE---------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE--------GDFD 605 (730)
Q Consensus 543 ~~~~~~~~p~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 605 (730)
+.++.. |+...+..+...+... |++++|+..++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888765 6677888888888888 88999999999888765 55788888888888888 8899
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLK--PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
+|++.|+++++..+. .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886431 378889999999999999999999999998853 33577888888999999999998876654
Q ss_pred H
Q 004791 684 M 684 (730)
Q Consensus 684 m 684 (730)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=4.4e-12 Score=128.41 Aligned_cols=275 Identities=16% Similarity=0.138 Sum_probs=165.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 381 YNALIDGYCKEGLMEAALQILDLMKSNNCSPN----ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456 (730)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 456 (730)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++++..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 3344455556666666666666655542 112 2344455555555555555555555543310
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHh
Q 004791 457 GQCREGHLDSAYKVLHLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK-----AGEVIYTALIDGYCK 530 (730)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~ 530 (730)
...+.. .....+..+...+...|++++|...+++..+.... ....++..+...|..
T Consensus 74 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 74 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp ------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 000000 01223444444555555555555555554432100 012355566666666
Q ss_pred cCC--------------------hhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 004791 531 EGK--------------------IDDAHSLLERMLSD----D-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV- 584 (730)
Q Consensus 531 ~g~--------------------~~~A~~~~~~~~~~----~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~- 584 (730)
.|+ +++|...+++.... + .+....++..+...+...|++++|...+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 66666666665431 1 011234667777778888888888888887764210
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 004791 585 KP----TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-PD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-- 653 (730)
Q Consensus 585 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-- 653 (730)
.+ ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...+...|++++|...++++.+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 01 1336778888889999999999999888753111 11 5577888899999999999999999887531
Q ss_pred --CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 654 --IVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 654 --~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
-.+ ...++..++..|...|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 011 1457788999999999999999999999863
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=6.5e-11 Score=118.21 Aligned_cols=219 Identities=13% Similarity=0.100 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hCCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004791 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQC-------REGHL-------DSAYKVLHLINESGLVPDQFTYSVFIDTLCK 495 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 495 (730)
++|...|++++... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 335666666666654 34765 7888888888873122355678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEV-IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY-RERKVQEAL 573 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~A~ 573 (730)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888876433 333 78888888888888999999998888765 344455544433322 368899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 574 LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG-LKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 574 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
.+|+++++.. +.+...|..++..+.+.|++++|+.+|+++++.. +.| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888753 4567888888888888899999999999998853 343 46678888888888999999999999988
Q ss_pred HC
Q 004791 651 RE 652 (730)
Q Consensus 651 ~~ 652 (730)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=2e-12 Score=130.89 Aligned_cols=234 Identities=11% Similarity=-0.025 Sum_probs=130.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHh
Q 004791 170 GYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN----IYTFNTMINGCCKVGNVGEAELYVSKIVQA----GLS-PDTFT 240 (730)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~ 240 (730)
.+......+...|++++|+..|+++++.... + ...+..+...+...|++++|...++++.+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455566777888889999998888876322 3 346777788888888888888888876542 111 12445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCC-CcC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGC-RRN----EVSYTNLIHGLCEAKR--------------------VDEALDL 295 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 295 (730)
+..+...|...|++++|...+++..+... ..+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66677777777777777777776544210 011 2356666666777777 6666666
Q ss_pred HHHHhhC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHH
Q 004791 296 FRRMGED----D-CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PN----VHTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 296 ~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~ 365 (730)
+++..+. + .+....++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554321 1 0111234555555566666666666666555432100 01 12445555555555555555555
Q ss_pred HHHHHHCCCC-CC----hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004791 366 LNRMLEKGLF-PN----VVTYNALIDGYCKEGLMEAALQILDLM 404 (730)
Q Consensus 366 ~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (730)
+++..+.... .+ ..++..+...|...|++++|...+++.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5554432100 00 233444444444555555555444443
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.1e-11 Score=128.24 Aligned_cols=230 Identities=9% Similarity=-0.047 Sum_probs=167.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------cCHHHHH
Q 004791 454 LIYGQCREGHLDSAYKVLHLINES----GLVP-DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK------AGEVIYT 522 (730)
Q Consensus 454 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 522 (730)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555667778888888888777653 1111 2356677777888888888888888877653111 1235678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDC-LPN----SYTYNALIDGLYRERKVQEALLLVEKMTKM----GV-KPTVYTYT 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~~~~~~~~ 592 (730)
.+...|...|++++|+..+++.++... .++ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988775310 011 247888889999999999999999988862 32 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGL---KP-DVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVP-DSVTYTLL 664 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~-~~~~~~~l 664 (730)
.+...+.+.|++++|.+.+++.++... .| ....+..+...+...|+ +++|+.++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 899999999999999999998876311 11 22335678888888998 77777777765 2233 35577789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004791 665 ICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..|...|++++|.+++++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.1e-11 Score=128.26 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=145.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CC-----CHHhHHH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQ----NLSP-TLITYNSLIYGQCREGHLDSAYKVLHLINESGL-VP-----DQFTYSV 488 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~ 488 (730)
...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+... .+ ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555666666665555442 1011 223455566666666666666666665543210 01 1245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEKKGIK-----AGEVIYTALIDGYCKEGKIDDAHSLLERMLS-----DDCLPNSYTYNA 558 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 558 (730)
+...|...|++++|...+++..+.... ....++..+..+|...|++++|+..+++.++ ...+....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 667777777777777777776643111 1123677788888888888888888888776 221334567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKM----GVKPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKP-DVYTYTAFI 630 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 630 (730)
+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888888888888887652 111122335667777788888 77777777765 2222 344677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999988775
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=3.3e-11 Score=127.97 Aligned_cols=210 Identities=9% Similarity=-0.043 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI-DDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
.++++...++....... .+...+..+...|...|++ ++|+..|++.++.. +.+...|..+...|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777777666543 4788999999999999999 99999999999876 556889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 004791 577 EKMTKMGVKPTVYTYTILIEEVLKE---------GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI--------GKL 639 (730)
Q Consensus 577 ~~m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~ 639 (730)
+++++.. |+...+..+...+... |++++|++.++++++..+. +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999864 7788999999999999 9999999999999997543 788999999999998 999
Q ss_pred HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCChhhhhhhc
Q 004791 640 DEAEDLIVKMNREGIV---PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEP-SHHTYAFLIKHLSNKKVDERKQQC 715 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~l~~~~~~e~~~~~ 715 (730)
++|++.|++..+.. + .+...|..++.+|...|++++|++.|++.++. .| +...+..+...+...|..+++.+.
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999853 2 37899999999999999999999999999875 44 445566777777777766665543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=128.97 Aligned_cols=236 Identities=15% Similarity=0.095 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CC
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINES-------GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK------G-IK 515 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~ 515 (730)
++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++++.+. + ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3344444444444444444444444331 11112334444555555555555555555554432 1 11
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 004791 516 AGEVIYTALIDGYCKEGKIDDAHSLLERMLSD------DC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKM------ 582 (730)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------ 582 (730)
....++..+...|...|++++|...++++.+. +. +....++..+...+...|++++|+.+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 12345566666666677777776666666542 11 123345666677777777777777777776653
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 583 GVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-------GLKPD-------VYTYTAFIQAYCSIGKLDEAEDLIV 647 (730)
Q Consensus 583 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 647 (730)
+..| ...++..+...+...|++++|.+.++++++. ...+. ...+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1112 3456677777777888888888888777752 11111 1122233333445556666666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 648 KMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 648 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..... +.+..++..++.+|.+.|++++|.+++++.++
T Consensus 269 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666532 22467788889999999999999999998875
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=129.99 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=126.7
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN-------MVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA----- 232 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----- 232 (730)
+.+..++..+...+...|++++|+..|+++++. .......++..+...|...|++++|...++++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445678889999999999999999999999873 22224457888888999999999999999988764
Q ss_pred -CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHhchhC------C-CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-
Q 004791 233 -GL-SPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK------G-CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED- 302 (730)
Q Consensus 233 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 302 (730)
+. .....++..+...|...|++++|...|+++.+. + .+....++..+...+...|++++|.+.|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223556777888888888888888888877653 1 1234456777778888888888888888777653
Q ss_pred -----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 303 -----D-CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 303 -----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
+ .+....++..+...+...|++++|.+.++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122344677777777788888888888777765
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.3e-10 Score=106.02 Aligned_cols=166 Identities=18% Similarity=0.112 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667777888888888888888877654 4567778888888888888888888888888754 4567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 677 (730)
+...|++++|.+.++++.+... .+...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 8888999999999988887643 367788888888889999999999999888754 34678888888899999999999
Q ss_pred HHHHHHHHHc
Q 004791 678 FDVLKRMFDA 687 (730)
Q Consensus 678 ~~~~~~m~~~ 687 (730)
.+.++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999888754
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=2.1e-10 Score=118.38 Aligned_cols=230 Identities=9% Similarity=-0.066 Sum_probs=166.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C-cCHHHH
Q 004791 453 SLIYGQCREGHLDSAYKVLHLINESGL-VPD----QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-----K-AGEVIY 521 (730)
Q Consensus 453 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~ 521 (730)
.....+...|++++|...++++.+... .++ ..++..+...|...|++++|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556677888888888887765311 122 34567777788888888888888887765311 1 124567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSD----DCL-PNSYTYNALIDGLYRERKVQEALLLVEKMTK-----MGVKPTVYTY 591 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~~ 591 (730)
+.+..+|...|++++|.+.+++.++. +.+ ....++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888899999999999998887653 111 1234677888889999999999999998886 43 3346778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGL---KP-DVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVP-DSVTYTL 663 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~-~~~~~~~ 663 (730)
..+...+.+.|++++|.+.+++..+... .+ ....+..+...+...|+ +++|+.++++. +..+ ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8899999999999999999999887421 12 23355666677777888 77777777762 2223 2456678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
++..|...|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998864
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=6.4e-11 Score=130.70 Aligned_cols=165 Identities=14% Similarity=0.075 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...++.|..+|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35567777777777777777777777777754 4456677777777777777777777777777654 445677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~ 675 (730)
++...|++++|++.|+++++.... +...|..+..+|...|++++|++.|++..+. .| +...|..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 777778888888888777775433 5667777777788888888888888877773 34 4677777777788888887
Q ss_pred HHHHHHHHHHH
Q 004791 676 SAFDVLKRMFD 686 (730)
Q Consensus 676 ~A~~~~~~m~~ 686 (730)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777653
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=8.2e-10 Score=113.67 Aligned_cols=232 Identities=12% Similarity=-0.010 Sum_probs=123.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHhHHH
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIY----TFNTMINGCCKVGNVGEAELYVSKIVQAGLS-PD----TFTYTS 243 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~ 243 (730)
.....+...|++++|...+++++......+.. +++.+...+...|++++|...+.+....... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667888999999998888764333322 4556667777888888888888877653110 11 122455
Q ss_pred HHHHHHhcCChhHHHHHHHhchhC----CCC--c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--C--ChhhHH
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKK----GCR--R-NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR--P--TVRTYT 312 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~~~~ 312 (730)
+...+...|++++|...+++..+. +.+ + ....+..+...+...|++++|...+++..+.... + ...+|.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 566667777777777777665431 111 1 2234455666666666666666666665442110 0 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHH
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSARGCEPNV-HTYT-----VLIDCLCKENKVDEASELLNRMLEKGLFPN---VVTYNA 383 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ 383 (730)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 5555666666666666666655432111111 1111 122334455666666666555543221110 112344
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 004791 384 LIDGYCKEGLMEAALQILDLM 404 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m 404 (730)
+...+...|++++|...++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555544
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=2.7e-10 Score=108.07 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=160.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
.|+..+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..+++.++.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999999988764577777779999999999999999999999876 45677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTV-------YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD---VYTYTAFI 630 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 630 (730)
..+...|++++|+..+++.++.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998864 3455 55788888889999999999999999875 444 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH 702 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 702 (730)
.+|...| ...++++...+ ..+...|.... ....|.+++|+..+++.++. .|+......++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 7776544 44556666543 23444444433 34567789999999999875 6766555544443
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=3.2e-10 Score=116.93 Aligned_cols=227 Identities=9% Similarity=-0.061 Sum_probs=146.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC-----CC-CHHhHHHH
Q 004791 421 CGFCKRKNVHRAMSLLNELLEQNL-SP----TLITYNSLIYGQCREGHLDSAYKVLHLINESGL-----VP-DQFTYSVF 489 (730)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~l 489 (730)
..+...|++++|+..++++.+... .+ ...++..+...+...|+++.|...+++..+... .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666666554310 01 133556666667777777777776666544210 11 13456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKK----GIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLS-----DDCLPNSYTYNAL 559 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 559 (730)
...|...|++++|...+++..+. +.. ....++..+..+|...|++++|+..+++.+. .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 77777778888887777776653 111 1234677788888888888888888888776 43 3336677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMG----VKPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKP-DVYTYTAFIQ 631 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 631 (730)
...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|+..+++. +..+ ....+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 888888889999988888887631 12223445566666667777 77777777662 2222 2345667888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|...|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999888765
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.1e-09 Score=112.59 Aligned_cols=233 Identities=13% Similarity=-0.006 Sum_probs=140.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHhchhCCC-CcC----hhhHHH
Q 004791 208 TMINGCCKVGNVGEAELYVSKIVQAGLSPDTF----TYTSLILGYCRNKDVEKGFRVFMMMPKKGC-RRN----EVSYTN 278 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ 278 (730)
.....+...|++++|...+++........+.. +++.+...+...|++++|...+++.....- ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667899999999999988764333322 456666777888888888888887654210 011 223566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----ChhhHH
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGED----DCR--P-TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP----NVHTYT 347 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~ 347 (730)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777778888888888888776542 211 2 23455667777778888888888887776542221 124566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hhcHHH
Q 004791 348 VLIDCLCKENKVDEASELLNRMLEKGLFPNV-VTYN-----ALIDGYCKEGLMEAALQILDLMKSNNCSPN---ARTYNE 418 (730)
Q Consensus 348 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 418 (730)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6777777778888888777776643111111 1111 222335677777777777776654321111 112344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004791 419 LICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 419 li~~~~~~~~~~~A~~~~~~~~ 440 (730)
+...+...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666665544
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=3.6e-10 Score=103.03 Aligned_cols=163 Identities=22% Similarity=0.157 Sum_probs=117.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 485 TYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY 564 (730)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 564 (730)
.+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4445555666677777777777766655332 56667777777777777777777777776654 445667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
..|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+... .+...+..++..+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888888887777654 45667777777888888888888888888777542 256777788888888888888888
Q ss_pred HHHHHHH
Q 004791 645 LIVKMNR 651 (730)
Q Consensus 645 ~~~~m~~ 651 (730)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=1.7e-10 Score=127.38 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=116.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...++.+...+.+.|++++|+..|++.++..+. +..+|..+..+|.+.|++++|+..|++.++.+ +.+...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455666666777777777777777777666543 56667777777777777777777777777654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
|.+.|++++|++.|++.++.. +.+...|+.+..+|...|++++|++.|+++++..+. +...|..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777654 445677777777777777777777777777775433 566777777777777777777
Q ss_pred HHHHHHHHH
Q 004791 643 EDLIVKMNR 651 (730)
Q Consensus 643 ~~~~~~m~~ 651 (730)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.1e-09 Score=103.75 Aligned_cols=194 Identities=11% Similarity=-0.039 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
+..+......+...|++++|++.|++..+....++...+..+..++...|++++|...+++..+..+. +...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 34455555555555666666666655555433244455555555566666666666666666655433 44556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNS-------YTYNALIDGLYRERKVQEALLLVEKMTKMGVKP--TVYTYTILIEEV 598 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~ 598 (730)
|...|++++|+..+++.++.. +.+. ..|..+...+...|++++|++.|+++++.. +. +...+..+..++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 666666666666666666543 2233 345555666666677777777777666643 22 345555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
... +..+++++...+.. +...|.... ....|.+++|...+++..+.
T Consensus 164 ~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 433 23334444443222 333343332 23345577777777777763
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=2.2e-10 Score=112.51 Aligned_cols=227 Identities=15% Similarity=0.048 Sum_probs=158.8
Q ss_pred HhCCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCcCHHHHHHH
Q 004791 459 CREGHLDSAYKVLHLINES-------GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK------G-IKAGEVIYTAL 524 (730)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 524 (730)
...|++++|...+++..+. ..+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888777766552 22224567888889999999999999999998765 1 12245678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSD------D-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM------G-VKPTVYT 590 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~-~~~~~~~ 590 (730)
...|...|++++|...+++.+.. . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234567888899999999999999999998864 1 1224567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCC
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSL-------GLKP-DVYTYTAFIQAYCSIGKL------DEAEDLIVKMNREGIVP 656 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~g~~~ 656 (730)
+..+...+...|++++|.+.++++++. ...+ ....|..+...+...+.. .++...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998863 1112 223344444444433332 2222222222111 011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...++..++..|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788899999999999999999999875
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=2.6e-09 Score=105.50 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKK----GIKA-GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---LP--NSYTYNALIDG 562 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~ 562 (730)
|...|++++|...|.+..+. +..+ ...+|+.+..+|.+.|++++|+..+++.++... .+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544432 1111 134566666667777777777776666654210 01 13467777888
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 004791 563 LYRE-RKVQEALLLVEKMTKMGVK-PT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV------YTYTAFI 630 (730)
Q Consensus 563 ~~~~-~~~~~A~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 630 (730)
|... |++++|+..|++.++.... .+ ..++..++..+...|++++|++.|+++.+....... ..|..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 8888888888888753200 11 356788888999999999999999999886433221 2567778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPDS------VTYTLLICAYA--HLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 686 (730)
.++...|++++|...+++..+ +.|+. ..+..++.++. ..+++++|++.|+++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888899999999999999876 33432 13445556664 45678888888877643
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=3.3e-10 Score=111.28 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=136.5
Q ss_pred cCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCC-CCHHhHHHHHH
Q 004791 181 FHLVDEMKRVYLEMLDN-------MVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA------GLS-PDTFTYTSLIL 246 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------g~~-~~~~~~~~li~ 246 (730)
.|++++|+..|+++++. .......++..+...|...|++++|...+.++++. +.. ....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 35555555555555442 11123446677777777777777777777777653 111 23456677777
Q ss_pred HHHhcCChhHHHHHHHhchhC------C-CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCCChhhHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKK------G-CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED------D-CRPTVRTYT 312 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~ 312 (730)
.|...|++++|.+.|++.... . .+....++..+...+...|++++|.+.|+++.+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 777888888888777776653 1 1234566777888888888888888888877653 1 122345777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-hhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCh
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSAR-------GCEPN-VHTYTVLIDCLCKENKVD------EASELLNRMLEKGLFPNV 378 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~-~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~g~~~~~ 378 (730)
.+...+...|++++|.+.++++.+. ...+. ...+..+...+...+... ++...++..... .+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHH
Confidence 8888888888888888888877653 11222 233333333333333222 222222221111 11234
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
.++..+...|.+.|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56778888889999999999998887653
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=1.3e-07 Score=100.02 Aligned_cols=203 Identities=9% Similarity=-0.005 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... +. +...|... ....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~y----~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLYY----GLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHHH----HHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHHH----HhhcchhHH---HHHHH
Confidence 3455666665542 334566666666666777777777777777766 22 33333222 111111111 12211
Q ss_pred hC---C------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 004791 546 SD---D------C---LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG-DFDHAHRLLD 612 (730)
Q Consensus 546 ~~---~------~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 612 (730)
+. . . ......|...+..+.+.++.+.|..+|+++ +.. ..+...|...+..-...+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 0 0 011245666777777788899999999988 322 234445543333333333 6999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 613 QMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 613 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..++.... +...|...++...+.|+.+.|..+|+++. .....|...+..=...|+.+.+.++++++.+
T Consensus 345 ~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99885322 45567777888888999999999999972 3577788888777788999999998888873
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1.4e-07 Score=99.85 Aligned_cols=125 Identities=9% Similarity=0.057 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER-KVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
.+|...+..+.+.+..+.|..+|++. ... ..+...|...+..-...+ +.+.|..+|+..++.. +.+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666677788888888877 321 123344433332222223 5888888888877643 3344555666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+.|+.+.|+.+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888862 2466777777777777888888887777763
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=5.1e-09 Score=97.46 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|++.|+++++..+. +...|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 7778888888999988888888765 557788888888888899999999999888886533 67788888888766554
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004791 639 --LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLI 700 (730)
Q Consensus 639 --~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 700 (730)
.+.+...+++... ..|....+..++.++...|++++|+..|++.++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3445555555542 222333455566677778889999999998886 477765554443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=9.3e-09 Score=87.74 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.|..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++++.+.+. .+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 35556666667777777777777776643 34566677777777777777777777777776542 25666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
..|++++|.++++++.+.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888777643 335667777777888888888888888877654
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=7.9e-09 Score=96.17 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
..+..+|.+.|++++|+..+++.++.+ |.+...+..+...+...|++++|+..|+++++.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347888888999999999999988875 5577888888889999999999999999988865 55778888888887665
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 602 GD--FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 602 g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
|+ .+.+...+++... ..|....+..+..++...|++++|+..|++.++ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 54 4455666666542 233333445556677778899999999999987 568765544443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=4.4e-08 Score=94.49 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=102.4
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-KAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 467 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444455666666667777777777776655543 1245566666777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 546 SDDCLP-----NSYTYNALIDG--LYRER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 546 ~~~~~p-----~~~~~~~li~~--~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+.. | +..+...++.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 543 4 23444444444 22223 677777777776654 24433333344466677777777777765543
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 617 LG-----L----KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 617 ~~-----~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.. - +.|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 1245555455555555565 677777777763
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=1.3e-08 Score=98.71 Aligned_cols=187 Identities=11% Similarity=-0.001 Sum_probs=104.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG---EVIYTALIDGYCKEGKIDDAHSLLERMLSDDC--LPNSYTYN 557 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~ 557 (730)
...+..+...+.+.|++++|...|+++.+..+. + ...+..+..+|.+.|++++|+..|++.++... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 444444555555556666666666665554322 2 34455555555556666666666665555321 11123444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 558 ALIDGLYR--------ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 558 ~li~~~~~--------~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
.+..++.. .|++++|+..|+++++.. +.+......+. .+..+... -...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHHHHH
Confidence 44455555 555555555555555432 11111111110 00000000 01123567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAYAHL----------GLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
+.+|.+.|++++|+..|+++.+.. |+ ...+..++.+|... |++++|+..|+++++. .|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 888999999999999999998743 43 45777888888866 8899999999999875 4554
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=8.7e-08 Score=93.58 Aligned_cols=229 Identities=10% Similarity=0.004 Sum_probs=163.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----Hhc---CC
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG--RVEEAQVLFDSLEKKGIKAGEVIYTALIDGY----CKE---GK 533 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 533 (730)
..++|+++++.++.... -+...|+.--..+...| ++++++..++.++..+++ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34577777777776532 24555666666666777 888888888888877655 555665544444 444 67
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HH
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ--EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD------FD 605 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------~~ 605 (730)
+++++.+++++++.+ +.+..+|+.-...+.+.|.++ +++++++++++.. +-|...|+.....+...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888888765 567778877777777777777 8888888888765 4577777777777766666 88
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE-AEDLIVKMNREG--IVPDSVTYTLLICAYAHLGLIYSAFDVLK 682 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (730)
++++.+++++...+. |...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888887544 78888888888888887444 555666655422 12367788888888888899999999999
Q ss_pred HHHHcCCCCCHHHHH
Q 004791 683 RMFDAGCEPSHHTYA 697 (730)
Q Consensus 683 ~m~~~g~~p~~~~~~ 697 (730)
.+.++ +.|-..-|.
T Consensus 283 ~l~~~-~Dpir~~yW 296 (306)
T 3dra_A 283 LLKSK-YNPIRSNFW 296 (306)
T ss_dssp HHHHT-TCGGGHHHH
T ss_pred HHHhc-cChHHHHHH
Confidence 88753 456554444
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.2e-08 Score=87.14 Aligned_cols=130 Identities=21% Similarity=0.285 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566667777777777777777776654 3456667777777777777777777777777654 445667777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
..|++++|.+.++++.+... .+...+..++.++...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888887776542 25667777778888888888888888877763
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=8.3e-09 Score=100.05 Aligned_cols=187 Identities=7% Similarity=-0.027 Sum_probs=137.8
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cCHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPD---QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK--AGEVI 520 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 520 (730)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+++++..+. .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677888889999999999999999999986432 3 567888899999999999999999999987542 12456
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 521 YTALIDGYCK--------EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 521 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
+..+..++.. .|++++|+..|+++++.. +.+......+.. +..+.. .....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 7788888888 999999999999999865 222222222211 111110 0012255
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSI----------GKLDEAEDLIVKMNRE 652 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 652 (730)
.+...|.+.|++++|+..|+++++..+.. ....+..++.+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 67788888999999999999888753321 245677777788766 8889999999998874
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=2.4e-08 Score=93.11 Aligned_cols=175 Identities=14% Similarity=0.069 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 004791 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER----KVQEALLLVE 577 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~----~~~~A~~~~~ 577 (730)
|...|++..+.| +...+..+...|...+++++|+..|++..+.+ +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45556666666666666666666666666554 44555555555555 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 004791 578 KMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLK-PDVYTYTAFIQAYCS----IGKLDEAEDLIVK 648 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 648 (730)
+..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 666543 45555566666655 56677777777776665421 014556666666666 6667777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 004791 649 MNREGIVPDSVTYTLLICAYAHL-G-----LIYSAFDVLKRMFDAG 688 (730)
Q Consensus 649 m~~~g~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 688 (730)
..+. ..+...+..|...|... | +.++|..+|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7664 13444566666666543 2 6777777777776665
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=1.1e-07 Score=91.61 Aligned_cols=247 Identities=10% Similarity=0.023 Sum_probs=168.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 004791 424 CKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQ 503 (730)
Q Consensus 424 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 503 (730)
.-.|.+..++.-..++. .......-.-+.+++...|+++.. ....|....+..+...+ ..+ |+
T Consensus 24 fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 34567766665322211 111122233345667777766532 12234443444444333 322 67
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 504 VLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
..+++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888877665 33556667888999999999999999999987652 246778888999999999999999999999875
Q ss_pred CCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 004791 583 GVKP-----TVYTYTILIEE--VLKEG--DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE- 652 (730)
Q Consensus 583 ~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 652 (730)
.| +..+...+..+ ....| ++++|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45 35556666656 33445 899999999999765 345334445555889999999999999977652
Q ss_pred ----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 653 ----GI----VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 653 ----g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
+. +.|..++..++......|+ +|.+++.++.+. .|+....
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i 289 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFI 289 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHH
Confidence 10 2367777677777777887 899999999874 6766443
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=9e-09 Score=101.57 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCC----CCc-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC-CC----h
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKG----CRR-NEVSYTNLIHGLCEA-KRVDEALDLFRRMGEDDCR-PT----V 308 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-~~----~ 308 (730)
+|+.+..+|.+.|++++|+..|++..+.. -.. -..+++.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44444444555555555554444443211 000 123556666666664 7777777776666543100 01 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---h
Q 004791 309 RTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVH------TYTVLIDCLCKENKVDEASELLNRMLEKGLF-PN---V 378 (730)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~---~ 378 (730)
.+|..+...+.+.|++++|+..|++..+........ .|..+..++...|++++|...|++.++.... ++ .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 356666777777777777777777776654332211 3555666677777777777777776653211 01 1
Q ss_pred hhHHHHHHHHH--hCCCHHHHHHHHHHHHh
Q 004791 379 VTYNALIDGYC--KEGLMEAALQILDLMKS 406 (730)
Q Consensus 379 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 406 (730)
..+..++..+. ..+++++|+..|+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12333444443 34567777777766554
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=2.8e-09 Score=118.39 Aligned_cols=173 Identities=7% Similarity=-0.106 Sum_probs=104.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 494 CKRGRVEEAQVLFDSLE--------KKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
...|++++|++.++++. +..+. +...+..+..+|.+.|++++|+..++++++.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666665 33222 44556666666666666666666666666654 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL 645 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 645 (730)
.|++++|+..|+++++.. +.+...+..+..++.+.|++++ ++.|+++++.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 667777777766666644 3355666666666666777766 6666666665432 555666666667777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004791 646 IVKMNREGIVPD-SVTYTLLICAYAHLGL 673 (730)
Q Consensus 646 ~~~m~~~g~~~~-~~~~~~l~~~~~~~g~ 673 (730)
|+++.+. .|+ ...|..++.++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7666653 343 4555556666544443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=7.4e-08 Score=89.77 Aligned_cols=176 Identities=15% Similarity=0.061 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEG----KIDDAHSLL 541 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 541 (730)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566555543 45566666666666677777777777776654 45566666666666 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALLLVEKMTKMGVK-PTVYTYTILIEEVLK----EGDFDHAHRLLD 612 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 612 (730)
++..+.+ +...+..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|++.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55666667766665 67788888888877776511 125667777777777 777888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004791 613 QMVSLGLKPDVYTYTAFIQAYCSI-G-----KLDEAEDLIVKMNREG 653 (730)
Q Consensus 613 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 653 (730)
+..+.+ .+...+..|..+|... | ++++|..++++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 887752 2344566677776543 3 7888888888887765
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=2.3e-09 Score=93.73 Aligned_cols=118 Identities=9% Similarity=0.014 Sum_probs=54.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
..|++++|+..+++..... +.+...+..+...|.+.|++++|++.|+++++..+. +..+|..+..+|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence 3444455555544444321 112233334444555555555555555555543322 44455555555555555555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 004791 645 LIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDV-LKRMFD 686 (730)
Q Consensus 645 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 686 (730)
.|++..+. .| +..+|..++..|.+.|++++|.+. +++.++
T Consensus 87 ~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 87 CYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555542 23 344455555555555555443332 344443
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=4.2e-07 Score=88.74 Aligned_cols=217 Identities=11% Similarity=0.076 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc---CCHH
Q 004791 290 DEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG--RKSEALEFFNEMSARGCEPNVHTYTVLIDCL----CKE---NKVD 360 (730)
Q Consensus 290 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 360 (730)
++|+++++.+...+ +-+..+|+.-...+...| +++++++.++.++..+++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 56777777776654 334556666666666666 777777777777766555 555555544444 344 5677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC------HHHH
Q 004791 361 EASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME--AALQILDLMKSNNCSPNARTYNELICGFCKRKN------VHRA 432 (730)
Q Consensus 361 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~A 432 (730)
+++++++++.+...+ +..+|+.-.-.+.+.|.++ +++++++++.+.+ +.|...|+.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 777777777766443 6666666666666666666 7777777777654 4455666655555555554 6677
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH-HHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS-AYKVLHLINESG--LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSL 509 (730)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 509 (730)
++.+.+++... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+..++.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77777766653 2366667666666666665333 334444443322 1234555666666666666666666666666
Q ss_pred HH
Q 004791 510 EK 511 (730)
Q Consensus 510 ~~ 511 (730)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=4.1e-09 Score=92.18 Aligned_cols=144 Identities=10% Similarity=0.004 Sum_probs=84.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344455566666666666655432 2223344556666666666666766666666654 44566666666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004791 605 DHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL-IVKMNREGIVP-DSVTYTLLICAYAHLGL 673 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~-~~~~~~~l~~~~~~~g~ 673 (730)
++|+..|+++++..+. +...|..+..+|.+.|++++|.+. +++..+. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 7777777766665322 556666666667777766655443 4666653 34 45566665556655553
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1e-08 Score=92.59 Aligned_cols=161 Identities=11% Similarity=0.103 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE-VL 599 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~ 599 (730)
+..+...+.+.|++++|+..+++.++.. +.+...+..+...+...|++++|+..++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3444555666666666666666655543 3455566666666666666666666666665533 243333222211 11
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
..+...+|+..+++.++..+. +...+..+..++...|++++|...++++.+....+ +...+..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222233467777777765332 56777777777888888888888888877743111 2456777777788888888888
Q ss_pred HHHHHHH
Q 004791 679 DVLKRMF 685 (730)
Q Consensus 679 ~~~~~m~ 685 (730)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.2e-08 Score=113.38 Aligned_cols=173 Identities=12% Similarity=-0.019 Sum_probs=94.7
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 284 CEAKRVDEALDLFRRMG--------EDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 355 (730)
...|++++|++.|++.. +.. +.+...|..+...+...|++++|++.|+++.+.++. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666655 322 334455555666666666666666666666554333 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSL 435 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 435 (730)
.|++++|...|++.++.... +...|..+...|.+.|++++ .+.|++..+.+ +.+...|..+...+.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666554322 44555566666666666666 66666655543 33455566666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 436 LNELLEQNLSPTLITYNSLIYGQCREG 462 (730)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~li~~~~~~g 462 (730)
|+++++.. +.+...+..+..++...+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccC
Confidence 66655432 112344444555544433
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=4.2e-08 Score=107.06 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
.|++++|...++++.+..+. +...+..+...|.+.|++++|.+.+++.++.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666777777766665433 45666666777777777777777777776654 44566666666677777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI---GKLDEAEDLIVKMNRE 652 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 652 (730)
+++..+.. +.+...+..+..++...|++++|.+.++++.+.... +...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77666643 345666666667777777777777777776665322 455666666666666 6777777777776664
Q ss_pred C
Q 004791 653 G 653 (730)
Q Consensus 653 g 653 (730)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=2.7e-08 Score=97.78 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI-LI 595 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-l~ 595 (730)
+...+..+...+.+.|++++|...+++.+... +.+...+..+...+.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44555666667777777777777777777655 4466677777777777777777777777766543 44333222 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD---SVTYTLLICAYAHLG 672 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g 672 (730)
..+...++.++|.+.+++.++..+. +...+..+...|...|++++|...++++.+.. |+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcC
Confidence 3355667777777777777775432 66777777888888888888888888877743 42 567777788888888
Q ss_pred CHHHHHHHHHHHH
Q 004791 673 LIYSAFDVLKRMF 685 (730)
Q Consensus 673 ~~~~A~~~~~~m~ 685 (730)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888877777654
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=9e-08 Score=90.25 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=115.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG--EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS---YTYN 557 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~ 557 (730)
...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 34455566677788888888888888887644321 3467777888888888888888888887754 1111 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 558 ALIDGLYR------------------ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 558 ~li~~~~~------------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
.+..++.. .|++++|+..|+++++.. +.+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 344555555555555432 1111111110000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
......+...|.+.|++++|+..|+++.+.. |+ ...+..++.+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356677889999999999999999853 44 2568889999999999999999999888753
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=4e-08 Score=88.62 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHH-HHhcC
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHG-LCEAK 287 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 287 (730)
....+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|...|++..... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344445555555555555544332 1234445555555555555555555555554422 122222211111 11112
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP-NVHTYTVLIDCLCKENKVDEASELL 366 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 366 (730)
+..+|.+.|++..+.+ +.+...+..+...+...|++++|+..|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555554432 2234555555555555555555555555555543322 2334555555555555555555555
Q ss_pred HHHH
Q 004791 367 NRML 370 (730)
Q Consensus 367 ~~~~ 370 (730)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=4e-08 Score=107.17 Aligned_cols=156 Identities=10% Similarity=-0.021 Sum_probs=120.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSL 540 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 540 (730)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999888753 235778888999999999999999999999987654 678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE---GDFDHAHRLLDQMVSL 617 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 617 (730)
+++.++.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5578889999999999999999999999998865 45788889999999999 9999999999999986
Q ss_pred CCC
Q 004791 618 GLK 620 (730)
Q Consensus 618 ~~~ 620 (730)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=2e-07 Score=87.82 Aligned_cols=189 Identities=6% Similarity=-0.053 Sum_probs=118.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HhHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP-N-IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDT--FTYTS 243 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ 243 (730)
...+..+...+.+.|++++|+..|+++++..+.. . ...+..+..+|.+.|++++|+..|+++++..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3456666777888999999999999998754321 1 346778889999999999999999999886433221 23444
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--------------
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR-------------- 309 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------------- 309 (730)
+..++.+.|.. .+ ..|..+...+...|++++|...|+++.+.. +-+..
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHH
Confidence 44445432100 00 001111222223344444444444444332 11111
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 310 ---TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 310 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
....+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|+.++|.+.++.+...+.
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 113567788899999999999999988643311 25678889999999999999999998887653
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=8.6e-08 Score=94.11 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhH-HHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSY-TNLI 280 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 280 (730)
+...+..+...+.+.|++++|...|+++.+..+ .+...+..+...+.+.|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 445677778888889999999999999888643 366778888889999999999999999887643 443332 2333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCH
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP-NVHTYTVLIDCLCKENKV 359 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~ 359 (730)
..+.+.++.++|.+.|++..... +.+...+..+...+...|++++|++.|.++++..+.. +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667788888888888887765 4567788888888889999999999998888875432 256788888888888888
Q ss_pred HHHHHHHHHHHH
Q 004791 360 DEASELLNRMLE 371 (730)
Q Consensus 360 ~~A~~~~~~~~~ 371 (730)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=7.3e-08 Score=95.80 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=106.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHHH
Q 004791 492 TLCKRGRVEEAQVLFDSLEKKGIK-----AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---LP--NSYTYNALID 561 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~ 561 (730)
.|...|++++|...|.+..+.... .-..+|+.+..+|.+.|++++|+..+++.++... .+ ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544332100 0123556666667777777777777776554210 11 1245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGV---KP--TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD-VYTYTAFIQ 631 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 631 (730)
.|.. |++++|+..|++.++... .+ ...++..+...+...|++++|++.|++.++. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 888888888877764210 01 1356777778888888888888888877763 11111 225566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPD------SVTYTLLICAYAHLGLIYSAFD 679 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l~~~~~~~g~~~~A~~ 679 (730)
++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7777788888888888877 3 232 12344445544 4677665555
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=2.2e-06 Score=84.51 Aligned_cols=232 Identities=10% Similarity=0.038 Sum_probs=159.3
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-C-ChhHH
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE-G-KIDDA 537 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 537 (730)
.+..++|+++++.++..... +..+|+.--..+...| .+++++.+++.++...++ +..+|+.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34456777777777775422 4555666666666667 488888888888877665 667777766666665 6 77888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ--------EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD------ 603 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------ 603 (730)
+++++++++.+ +.|..+|+--...+.+.+.++ +++++++++++.. +-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 88888888765 556777766655555555555 8888888888765 4677888888777777775
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 004791 604 -FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL--------------------DEAEDLIVKMNREG-----IVPD 657 (730)
Q Consensus 604 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~m~~~g-----~~~~ 657 (730)
++++++.+++++...+. |...|+.+-..+.+.|+. .+..++..++...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888888886544 777888777777776653 33344444443321 1356
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 658 SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
...+..|+..|...|+.++|.++++.+.++ +.|-..-|+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~ 341 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWE 341 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHH
Confidence 788889999999999999999999998653 5665555543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=1.7e-06 Score=85.26 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=122.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDC-LPNS----YTYNALIDGLYRERKVQEALLLVEKMTKMGVK-PT----VYTYT 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~----~~~~~ 592 (730)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887431 1221 12334666677788999999999999873222 23 34688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVS----L-GLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE----GIVPD-SVTY 661 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~ 661 (730)
.++..|...|++++|.+.|+++++ . +..+ ...+|..++.+|.+.|++++|.+.+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 1112 2347888999999999999999999988752 22222 6789
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004791 662 TLLICAYAHLG-LIYSAFDVLKRMFD 686 (730)
Q Consensus 662 ~~l~~~~~~~g-~~~~A~~~~~~m~~ 686 (730)
..++.+|.+.| .+++|.+.+++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999 57999999998863
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=4.1e-07 Score=84.80 Aligned_cols=127 Identities=10% Similarity=-0.073 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
.+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455566666677777776666553 3456666666666666667777776666666543 345566666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKP---------------DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..|++++|++.|+++.+..... ....+..+..+|...|++++|.+.++++.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666643220 114556666666666666666666666665
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=2.5e-07 Score=77.73 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
..+...+..|.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45566677777777777777777777765432 66677777777777777777777777777643 23466777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 669 AHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
...|++++|++.|++.++. .|+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777777777777777763 55443
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=6.7e-07 Score=83.29 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
+..+...+...|++++|...|++... ++...|..+...+.+.|++++|.+.|++..+.+ +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34455666777777777777777643 566777777777777788888888777776654 3456677777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 321 VGRKSEALEFFNEMSARGCEP---------------NVHTYTVLIDCLCKENKVDEASELLNRMLEKG 373 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 373 (730)
.|++++|++.|++..+..... ....+..+..++.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888887777653321 12567777778888888888888888877753
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=2.7e-07 Score=91.67 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-hh
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEP-----NVHTYTVLIDCLCKENKVDEASELLNRMLEKG----LFPN-VV 379 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~-~~ 379 (730)
++..+...|.. |++++|++.|++.+...... ...++..+...|.+.|++++|+..|++.++.. ..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444444444 55555555554443321100 02344455555555555555555555554321 0000 12
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
.+..++..+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444455555555666655555555
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=2.4e-06 Score=84.18 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-----YTYNALIDGLYRERKVQEALLLVEKMTKMGV---KPT--VY 589 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~~~--~~ 589 (730)
.+...+..+...|++++|.+.+.+.++....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778889999999888887775422111 2234455666778899999999998875321 122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVS---LGL-KP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG----IVP-DS 658 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~-~~ 658 (730)
+|+.++..|...|++++|.+.++++.+ ... .+ ...++..++.+|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999999873 211 11 12578899999999999999999999987531 111 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSA-FDVLKRMF 685 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 685 (730)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7889999999999999999 77788765
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=6.9e-07 Score=79.24 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+..+...+...|++++|...|++.++.. +.+..++..+..++...|++++|.+.+++.++... .+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345666667777778888888777777654 44677777777888888888888888888777542 2567777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI--CAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~ 685 (730)
...|++++|...++++.+.. +.+...+..+. ..+...|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888887743 22455553333 33667788888888877654
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=7.1e-06 Score=80.84 Aligned_cols=179 Identities=9% Similarity=-0.008 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP-NIYTFNTMINGCCKVG-NVGEAELYVSKIVQAGLSPDTFTYTSLILGY 248 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 248 (730)
++.+-..+.+.+..++|+.++++++.. .| +..+|+.-...+...| .+++++.+++.++...+ .+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 333333344444556677777777664 23 3345565555555556 36666666666666543 2555555555555
Q ss_pred Hhc-C-ChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 004791 249 CRN-K-DVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVD--------EALDLFRRMGEDDCRPTVRTYTVVIFGL 318 (730)
Q Consensus 249 ~~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~ 318 (730)
.+. + ++++++++++.+.+.. +.|..+|+--.-.+.+.|.++ ++++.++++.+.+ +-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444 4 5566666666665532 344555554444444444444 4555555554443 22444455444444
Q ss_pred HhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 319 CRVGR-------KSEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355 (730)
Q Consensus 319 ~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 355 (730)
.+.++ ++++++.+++++...+. |...|+.+-..+.+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 44443 34444444444443333 44444443333333
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=5.3e-07 Score=75.75 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|++.+++.++.+.. +...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345556666777777777777777776654 456677777777777777777777777777765433 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLI 665 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 665 (730)
...|++++|++.|++..+. .| +...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 7777777777777777763 34 344444443
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.2e-06 Score=83.46 Aligned_cols=197 Identities=10% Similarity=-0.067 Sum_probs=133.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC---------------
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTAL-------IDGYCKEGKIDDAHSLLERMLSDDCLPN--------------- 552 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------- 552 (730)
..++...|.+.|.++.+..+. ....|..+ ...+.+.++..+++..+...+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 467777788888777777554 55666666 45555555555555555554441 111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--H
Q 004791 553 -------SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--V 623 (730)
Q Consensus 553 -------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 623 (730)
......+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234456667778888899988888877644 443366666677888899999999888665431 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
..+..+..++...|++++|+..|++.......|. ...+...+.++.+.|+.++|...|+++... .|+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 3677788888899999999999998875332243 446777788888999999999999999875 5664444443
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=2.1e-07 Score=80.72 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
..+..+...+.+.|++++|++.|++++...+. +...|..+..+|...|++++|+..|+++.+.. +.+...|..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34444555555555555555555555554322 44555555555555555555555555555532 11345555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004791 669 AHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~~ 686 (730)
...|++++|+..|++.++
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=1.5e-07 Score=81.77 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.|+++++..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45678888899999999999999999999876 568899999999999999999999999999997544 6778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
+|...|++++|...|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999984 57754
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.65 E-value=7.4e-06 Score=80.57 Aligned_cols=163 Identities=13% Similarity=0.043 Sum_probs=121.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-cCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHH
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEKKGIK-AGE----VIYTALIDGYCKEGKIDDAHSLLERMLSDDCL-PN----SYTYNA 558 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 558 (730)
.+..+...|++++|..++++..+.... ++. ..+..+...+...|++++|+..+++.+..... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677889999999999888775322 221 13345677777888999999999998874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTK----M-GVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD-VYTYT 627 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 627 (730)
+...|...|++++|...|+++.+ . +..+ ...++..++..|.+.|++++|++.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998884 1 1122 2347788999999999999999999988863 21222 66889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 004791 628 AFIQAYCSIGK-LDEAEDLIVKMNR 651 (730)
Q Consensus 628 ~l~~~~~~~g~-~~~A~~~~~~m~~ 651 (730)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 7999999998774
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=1.4e-06 Score=82.83 Aligned_cols=188 Identities=10% Similarity=-0.073 Sum_probs=130.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTM-------INGCCKVGNVGEAELYVSKIVQAGLSPD--------------- 237 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 237 (730)
+.++.+.|+..|.++.+.. +-....|+.+ ..++.+.++..+++..+.+.+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5688999999999998863 2245678777 56777777777777766666541 111
Q ss_pred -------HHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--h
Q 004791 238 -------TFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT--V 308 (730)
Q Consensus 238 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 308 (730)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667778888888888888887644 433366667778888888888888887665432 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 309 RTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKG 373 (730)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 373 (730)
..+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3667778888888888888888888774332243 3355667777888888888888888887753
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1e-06 Score=78.12 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
..+..+...+...|++++|...+++.+... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777778888888888888877754 4467777778888888888888888888887754 45677788888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTA--FIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...|++++|.+.++++.+.... +...+.. ++..+...|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888875432 4445533 33346777888888888877643
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=3.1e-07 Score=79.74 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=73.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
++++++.. +.+...+..+...+...|++++|+..|++++...+. +...|..+..+|...|++++|+..++++.+.. +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44444432 234555666677777777777777777777765432 66677777777777777777777777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.+...|..++.+|...|++++|++.|++.++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 25667777777777777777777777777653
No 133
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=1.4e-05 Score=78.41 Aligned_cols=221 Identities=9% Similarity=-0.028 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR----------VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK-- 533 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-- 533 (730)
+|++++..+....+. +...|+.--..+...+. +++++.+++.+....++ +..+|+.-..++.+.|+
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence 566666666654321 23333332222222222 56777888888777655 67777776666667663
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK-VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE----------- 601 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------- 601 (730)
+++++.+++++++.+ +-|..+|+.-...+...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 788888888888866 5677777777777777777 588888888888765 45777777776666555
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 004791 602 ---GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI-----------GKLDEAEDLIVKMNREGIVPDS-VTYTLLIC 666 (730)
Q Consensus 602 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~ 666 (730)
+.++++++.+++++...+. |...|+.+-..+.+. +.++++++.++++.+ +.||. ..+..++.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHH
Confidence 4578888888888886544 777787666666555 468889999999988 44653 33322222
Q ss_pred H---HHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 667 A---YAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 667 ~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
. ....|..+++..++.++.+ +.|...-
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 1 2235778888888888876 3565443
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2.8e-07 Score=83.01 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA-YCSIGKL--DEA 642 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~A 642 (730)
.|++++|...+++.++.. +.+...+..+...|...|++++|...|+++++.... +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 455555555555555433 344555555566666666666666666665554322 44555555555 5555665 666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
...++++.+.. +.+...+..++..|...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665532 223555556666666666666666666666553
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.8e-06 Score=71.99 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS 635 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 635 (730)
+..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|..+++++.+... .+...+..+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 3333344444444444444444443322 22333344444444444444444444444443221 133334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 636 IGKLDEAEDLIVKMNR 651 (730)
Q Consensus 636 ~g~~~~A~~~~~~m~~ 651 (730)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=5e-07 Score=83.35 Aligned_cols=156 Identities=14% Similarity=-0.022 Sum_probs=90.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGVK-PTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~ 604 (730)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..+ .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35566666664433322 1122345566666666666666666666666554 1111 1234566666777777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 004791 605 DHAHRLLDQMVSL----GLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI-VPD----SVTYTLLICAYAHLGL 673 (730)
Q Consensus 605 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~g~ 673 (730)
++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+..- ..+ ..++..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766652 1111 233566777777778888888887777663210 011 2345677777888888
Q ss_pred HHHHHHHHHHHHH
Q 004791 674 IYSAFDVLKRMFD 686 (730)
Q Consensus 674 ~~~A~~~~~~m~~ 686 (730)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877753
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=2.2e-07 Score=90.81 Aligned_cols=193 Identities=11% Similarity=0.034 Sum_probs=106.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...|+++++..+. +...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555666666777777777777777665433 56667777777777777777777777777654 4456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
+...|++++|...|++..+.. +.+...+...+....+ ..++.. +..........+......+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 777777777777777766532 0010011111111111 111111 1112222233344444444332 25777888
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 004791 643 EDLIVKMNREGIVPDS-VTYTLLICAYAHL-GLIYSAFDVLKRMFD 686 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 686 (730)
++.+++..+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8777777763 3543 3333443344443 567777777776653
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1.8e-06 Score=71.99 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777777654 4456677777777777788888888887777654 4566777777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
+...|++++|...++++.+..+. +...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 88888888888888887775432 455555555555443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=1.1e-06 Score=74.46 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.++++++.... +...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 34444444444444444444444444332 223344444444444444444444444444443211 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~ 651 (730)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=1.5e-06 Score=73.30 Aligned_cols=115 Identities=13% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444444444555555555555444432 223444444445555555555555555554443211 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
..|++++|...+++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555554432 123444444444444444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=3.3e-07 Score=82.56 Aligned_cols=121 Identities=11% Similarity=0.130 Sum_probs=81.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE-VLKEGDF--D 605 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 605 (730)
...|++++|+..+++.++.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566777777777766654 4566677777777777777777777777777654 3456666667776 6677777 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+|...++++++..+. +...+..+..+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777775432 5667777777777788888888888877774
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=3.5e-07 Score=89.35 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.+ +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 1234445555555555555555555555554442 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSA 336 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~ 336 (730)
.|++++|+..|++..+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1.6e-06 Score=73.45 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...+..+...+.+.|++++|+..+++.++.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45667777778888888888888888887764 4467777888888888888888888888887754 456777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
++...|++++|.+.|++..+.... +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 888888888888888888775322 4456666666666555
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=9.5e-07 Score=81.44 Aligned_cols=156 Identities=10% Similarity=-0.030 Sum_probs=96.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD----DC-LPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~~~~ 569 (730)
..|++++|.+.++.+.. .+.....++..+...+...|++++|...+++.+.. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35666666664443332 22224556666666777777777777777766551 11 12234566677777778888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcCC
Q 004791 570 QEALLLVEKMTKM----GVKP--TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG---LKP--DVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 570 ~~A~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~ 638 (730)
++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++..+.. ..+ -..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888877776642 1011 23456677778888888888888888776421 011 12345777888888899
Q ss_pred HHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNR 651 (730)
Q Consensus 639 ~~~A~~~~~~m~~ 651 (730)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888765
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.3e-06 Score=87.65 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT---------------VYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
...+..+...+.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|++.++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345555555555566666666665555533 112 467777888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004791 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA-FDVLKRMF 685 (730)
Q Consensus 618 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 685 (730)
.+. +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...|+.++| ...|++|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 67778888888888888888888888888743 23567777888888888888877 44666664
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=3.1e-07 Score=79.80 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=77.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
+++++... +.+...+..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|++.|++++...+.
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 44444433 2344566667777777888888888888777654 456777777777888888888888888887775433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 621 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+...+..+..+|...|++++|.+.|++..+.
T Consensus 88 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 -EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667777778888888888888888887763
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=1.4e-06 Score=73.26 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG--IVPD----SVTYT 662 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~----~~~~~ 662 (730)
..+..++..+.+.|++++|++.|+++++..+. +...|..+..+|...|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34566777777778888888888777775433 56677777788888888888888887776521 0111 24667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.++.++...|++++|++.|++.++. .||.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 7777888888888888888887763 45655443
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=8.4e-06 Score=80.18 Aligned_cols=166 Identities=13% Similarity=0.017 Sum_probs=117.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHH
Q 004791 486 YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG-----EVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---LPN--SYT 555 (730)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~ 555 (730)
+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|+..+++.++... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445566677777777777777666432211 12234456667788899999999988875321 112 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---CC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTK---MG-VKP--TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG----LKP-DVY 624 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~ 624 (730)
++.+...|...|++++|...++++.+ .. ..+ ...++..++..|...|++++|++.+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88888999999999999999998873 11 111 12578889999999999999999999887631 111 166
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEA-EDLIVKMNR 651 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 651 (730)
+|..+..+|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788999999999999999 777887764
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.6e-06 Score=71.51 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 667 (730)
...+..+...+.+.|++++|++.|++.++..+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345566667777777777777777777775432 56777777777778888888888888777743 2356777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 004791 668 YAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 668 ~~~~g~~~~A~~~~~~m~~~ 687 (730)
+...|++++|+..|++.++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888777653
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=2.1e-06 Score=72.32 Aligned_cols=119 Identities=8% Similarity=-0.037 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4456666777777777777777777777654 4466677777777777888888888887777654 4456777777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
+...|++++|.+.|++..+.... +...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 88888888888888887775432 566677777777666653
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=2.1e-07 Score=85.68 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPT----------------VYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 618 (730)
.+..+...+...|++++|+..|++.++.. +.+ ...+..+..++...|++++|+..++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44455555566666666666666665532 111 2566677777777777777777777777754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 004791 619 LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF-DVLKRMFD 686 (730)
Q Consensus 619 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 686 (730)
. .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|+.+++. ..++.|..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 256677777777777788888888777777643 225666777777777666666666 45555544
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=6.3e-05 Score=73.74 Aligned_cols=193 Identities=10% Similarity=0.028 Sum_probs=153.1
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 494 CKRGRV-EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK----------IDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 494 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
.+.|.+ ++|+.+++.++..++. +..+|+.--..+...+. +++++.+++.++..+ +.+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555 4899999999988765 56666665444444333 678999999999876 6788889888888
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 004791 563 LYRER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD-FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI--- 636 (730)
Q Consensus 563 ~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 636 (730)
+.+.+ .+++++.+++++++.. +-|...|+.-...+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 87777 4899999999999876 6788999988888888898 69999999999997655 888898887777665
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCH
Q 004791 637 -----------GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHL-----------GLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 637 -----------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
+.++++++.+++..... +-|...|+.+-..+.+. +.++++++.++++++. .||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 56899999999999854 34788888777666665 5689999999999974 6765
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=6.1e-07 Score=77.36 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
+...+..+...+...|++++|+..|++++..++. +...|..+..+|...|++++|+..+++..+.+ +.+...|..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3444555666677777777777777777765432 66667777777777777777777777777643 234666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+|...|++++|.+.|++.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777653
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=2.6e-06 Score=85.49 Aligned_cols=130 Identities=16% Similarity=0.044 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN---------------SYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
..+..+...|.+.|++++|+..|++.+... +.+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345555555566666666666666655543 111 4677888888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004791 584 VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA-EDLIVKMNR 651 (730)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 651 (730)
+.+...|..+..+|...|++++|+..|+++++..+. +...+..+..++.+.|+.++| ..++++|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888899999999999888886433 677888888888888888888 446666653
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=4.3e-06 Score=70.13 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.+++.++..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 445556666677777777777777776654 446677777777777777777777777777775432 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~ 651 (730)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777766
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=3.5e-06 Score=70.83 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK--PD----VYTYTA 628 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 628 (730)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666666643 345666666666777777777777777666653211 11 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 662 (730)
+..++...|++++|++.|++.++ ..||.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 67777777777777777777766 345655443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=1e-05 Score=68.84 Aligned_cols=99 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
.+...+..+...+...|++++|...|++.++.... +...|..+..++...|++++|...+++..+.+ +.+...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 45666777777777777777777777777765432 56677777777777777777777777777643 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 666 CAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+|...|++++|+..|++.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777788777777777764
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1e-05 Score=66.46 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
.+..++..+...|++++|.+.+++...... .+...+..++.++...|++++|...+++..+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 334444444445555555555554444321 134444444455555555555555555544432 123444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 670 HLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 670 ~~g~~~~A~~~~~~m~~ 686 (730)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555543
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=4.2e-07 Score=83.63 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN----------------SYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
..+..+...+.+.|++++|+..|++.+... +.+ ...+..+..++.+.|++++|+..+++.++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345555666666677777777776666542 111 267777888888889999999999888876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 004791 583 GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE-DLIVKMNRE 652 (730)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 652 (730)
. +.+...+..+..++...|++++|++.|++.++..+. +...+..+..++...|+.+++. ..+..|...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 557788888888999999999999999998876433 6777888888887777777766 555555543
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=1.3e-06 Score=75.25 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...+..+...+.+.|++++|...|++++... +.+...|..+..++...|++++|+..|+++++.++. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 33455556666777777788877777777654 456777777777777788888888888877776433 5566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~ 651 (730)
+|...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 78888888888888877776
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=5.4e-06 Score=73.35 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 667 (730)
...+..+...+...|++++|++.|++.++.... +...|..+..+|...|++++|+..+++.++.. +.+...|..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444555555555555555555555554322 44455555555555555555555555555532 1235555555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004791 668 YAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 668 ~~~~g~~~~A~~~~~~m~~ 686 (730)
|...|++++|++.|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=1.6e-05 Score=65.27 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344455555555666666666666555533 334555555666666666666666666666554322 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004791 634 CSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~ 652 (730)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666653
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=7.5e-06 Score=69.73 Aligned_cols=99 Identities=17% Similarity=0.048 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFI 630 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 630 (730)
.+...+..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|...++++++.... +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 455666777777777777777777777776654 445667777777777777777777777777775433 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777888888777777765
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=4.6e-06 Score=67.88 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP--DSVTYTLLI 665 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~ 665 (730)
...+..+...+...|++++|...++++++.... +...|..+..++...|++++|.+.+++..+.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555666666677777777777776665322 55666677777777777777777777777643 22 466677777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc
Q 004791 666 CAYAHL-GLIYSAFDVLKRMFDA 687 (730)
Q Consensus 666 ~~~~~~-g~~~~A~~~~~~m~~~ 687 (730)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777 7777777777777654
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=9e-06 Score=68.34 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI--VPD----SVTYT 662 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 662 (730)
..+..++..+...|++++|...|+++.+... .+...+..++.++...|++++|...++++.+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3455556666666666666666666665432 2555666666666666777777776666665320 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
.++.++...|++++|.+.|+++.+. .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6667777777777777777777654 3444444333
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=5.5e-06 Score=69.68 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK--PD----VYTYT 627 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 627 (730)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666677777777776666543 345666666677777777777777777776654211 11 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 667 (730)
.++.++...|++++|.+.++++.+. .|+...+..+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 7777777777777777777777763 3565555544443
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=7e-06 Score=68.21 Aligned_cols=94 Identities=10% Similarity=-0.087 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
+..+...+.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..+++..+.. +.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344556667777777777777777775432 66677777777777777777777777777743 2256677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 671 LGLIYSAFDVLKRMFD 686 (730)
Q Consensus 671 ~g~~~~A~~~~~~m~~ 686 (730)
.|++++|+..+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.2e-05 Score=66.66 Aligned_cols=98 Identities=19% Similarity=0.090 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 662 (730)
+...+..+...+...|++++|.+.|++.++. .|+ ...|..+..+|...|++++|+..+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555555666666666666666666666653 233 4556666666666677777777666666532 22456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.++.++...|++++|...|++.++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666667777777777777766653
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=1e-05 Score=71.48 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|+++++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456666666677777777777777776654 346667777777777777777777777777765432 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 004791 632 AYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777763
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.3e-05 Score=66.56 Aligned_cols=98 Identities=17% Similarity=0.059 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYT 627 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 627 (730)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|++.+++.++.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45566666666667777777777777766643 43 456666677777777777777777777665322 566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777763
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.4e-05 Score=79.14 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHH
Q 004791 565 RERKVQEALLLVEKMTK----MGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL--GL--KP-DVYTYTAFIQAYC 634 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~ 634 (730)
..|++++|..++++... .+..+ -..++..++..+...|++++|..+++++... +. .+ ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34555555555554432 11111 1334455555555555555555555555431 11 11 1334555555555
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNRE--GIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~--g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
..|++++|..++++.... .+..+ ...+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666666555554421 01111 2334444455555556666555555443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=9.7e-06 Score=67.33 Aligned_cols=93 Identities=13% Similarity=-0.039 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++..+. +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344455556666666666666666543 345666666666666666666666666666665332 455666666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNR 651 (730)
Q Consensus 637 g~~~~A~~~~~~m~~ 651 (730)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766665
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=2.6e-05 Score=65.49 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV---YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD---SVTYTLLIC 666 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~ 666 (730)
.+...+...|++++|.+.|+++++..+. +. ..+..++.++...|++++|...++++.+.. +.+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455666777777777777777664322 22 456667777777777777777777777643 122 556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~ 687 (730)
++...|++++|...|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777764
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=1.4e-05 Score=64.89 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAY 633 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~ 633 (730)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++.++.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334444444444555555555555555554432 11 244444555555
Q ss_pred Hhc-CCHHHHHHHHHHHHH
Q 004791 634 CSI-GKLDEAEDLIVKMNR 651 (730)
Q Consensus 634 ~~~-g~~~~A~~~~~~m~~ 651 (730)
... |++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 555555555555544
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=1.7e-05 Score=69.90 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFLI 700 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~ 700 (730)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|...|++++|+..|++.++. .|+.. .....+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4577888888888889999998888888753 335788888888888899999999988888874 56554 434333
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.1e-05 Score=82.67 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
....+..+...|.+.|++++|+..|++.++.. |+...+ ..+...+ .. +.....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 34556666777777777777777777766542 111000 0000000 00 001345566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~ 675 (730)
+|.+.|++++|+..++++++.... +...|..+..+|...|++++|+..|+++.+. .| +...+..+..++.+.|+.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence 666666777776666666665422 5666666666677777777777777776663 33 3455666666666666666
Q ss_pred HHHH-HHHHHH
Q 004791 676 SAFD-VLKRMF 685 (730)
Q Consensus 676 ~A~~-~~~~m~ 685 (730)
++.+ .+++|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 5553 344443
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=8.7e-05 Score=77.53 Aligned_cols=197 Identities=8% Similarity=-0.038 Sum_probs=95.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CC
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTL----------------ITYNSLIYGQCREGHLDSAYKVLHLINESGLV-PD 482 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 482 (730)
...+.+.|++++|++.|.++++....... ..+..++..|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566778888888888888775422111 12455666666666666666666654432101 11
Q ss_pred HH----hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--C---
Q 004791 483 QF----TYSVFIDTLCKRGRVEEAQVLFDSLEKK----GIKA-GEVIYTALIDGYCKEGKIDDAHSLLERMLSD--D--- 548 (730)
Q Consensus 483 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--- 548 (730)
.. ..+.+...+...|+.++|..+++..... +..+ -..++..+...|...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1111222222345566666665554431 1111 1234455555555666666666555554431 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 549 CLPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 549 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
.+....++..++..|...|++++|..++++... .+.++. ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 011123455555555555555555555555442 111111 12334444444555555555555555544
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=0.0001 Score=79.12 Aligned_cols=115 Identities=8% Similarity=0.102 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG--DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG-KLDEAEDL 645 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~ 645 (730)
+++++++++++++.. +.+..+|..-...+.+.| ++++++++++++++.+.+ +...|+....++.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 455555555555433 344555555555555555 445555555555554433 4555555555555555 55555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHH
Q 004791 646 IVKMNREGIVPDSVTYTLLICAYAHL--------------GLIYSAFDVLKRMFD 686 (730)
Q Consensus 646 ~~~m~~~g~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~ 686 (730)
++++.+.. +-|..+|+.....+.+. +.++++++++++.+.
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 55555533 22455555555444442 345556666655554
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=8.2e-05 Score=63.66 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKP------D-----VYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-----GI 654 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~ 654 (730)
+......+.+.|++++|++.|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777776666643220 2 237888888888888888888888888873 01
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 004791 655 VPD-SVTY----TLLICAYAHLGLIYSAFDVLKRMFD-----AGCEPSHHTYA 697 (730)
Q Consensus 655 ~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 697 (730)
.|+ ...| ...+.++...|++++|+..|++.++ .|+.+......
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 564 5677 7888888888888888888888863 35555444433
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=8.1e-05 Score=79.96 Aligned_cols=173 Identities=8% Similarity=-0.035 Sum_probs=145.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK----------IDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
....++|++.+++++..++. +..+|+.-..++.+.|+ ++++++.++++++.+ +.+..+|+.-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34457889999999998766 77788877777777777 899999999999876 6788899988888889
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 004791 566 ER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG-DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI------ 636 (730)
Q Consensus 566 ~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 636 (730)
.+ ++++++++++++++.. +-+...|+.-...+.+.| .++++++.++++++..+. |...|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 99 7799999999999976 568999999999999999 899999999999987655 888999888887763
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 637 --------GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL 673 (730)
Q Consensus 637 --------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 673 (730)
+++++++++++++.... +-|...|..+...+.+.|+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 56899999999999854 3368888888877777665
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.7e-05 Score=69.49 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGV-KPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLG----LKP-DVY 624 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~ 624 (730)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555666666655555543210 011 1355666667777777777777777666521 000 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNRE----GIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877642 1111 145677788888888999999888888764
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=8.6e-06 Score=85.95 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|++.++++++.... +...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3455667777777777766643 345666777777777777777777777777765432 56667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICA--YAHLGLIYSAFDVLK 682 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 682 (730)
|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776632 1133444445444 666677777777766
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=3.6e-05 Score=78.05 Aligned_cols=140 Identities=11% Similarity=-0.008 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+.+.|++++|+..|++.++.. +... ..... ++..+.. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 4456677777777788888877777766521 0000 00011 1111111 2234566666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 677 (730)
|.+.|++++|++.++++++.... +...|..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765422 56667777777777777777777777777632 22455666666666666666555
Q ss_pred HH
Q 004791 678 FD 679 (730)
Q Consensus 678 ~~ 679 (730)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=0.00012 Score=61.29 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTV---YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD---VYTYTAFIQA 632 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 632 (730)
+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++++..+. + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 4445556666777777766666533 1222 45566666777777777777777777664322 2 4556666777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004791 633 YCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~~ 652 (730)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777764
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=3.7e-05 Score=80.76 Aligned_cols=146 Identities=9% Similarity=-0.008 Sum_probs=90.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
....+..+...+.+.|++++|...|+++++..+.... . ..+... +.. +.....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~------------~~~~~~----~~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-L------------SEKESK----ASE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-C------------CHHHHH----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-C------------ChHHHH----HHH----HHHHHHHHHHHH
Confidence 3567888889999999999999999999886433110 0 000000 000 012345566666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++..+. +...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776654 445666777777777777777777777777765322 44566667777777776666
Q ss_pred HHH-HHHHHH
Q 004791 642 AED-LIVKMN 650 (730)
Q Consensus 642 A~~-~~~~m~ 650 (730)
|.+ ++++|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 553 344443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=5e-05 Score=66.86 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+...|..+..+|.+.|++++|+..++++++.++. +...|..++.+|...|++++|...|++..+. .|+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 3467777888888888888888888888886533 6778888888888888888888888888874 454
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=2.8e-05 Score=68.13 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPN----SYTYNALIDGLYRERKVQEALLLVEKMTKM----GVKP-TVY 589 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~ 589 (730)
++..+...+...|++++|+..+++.++... .++ ..++..+...+...|++++|...+++..+. +-++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555555566666666666655543210 011 135556666666777777777777666542 1001 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+..+...+...|++++|.+.+++.++. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777788888888887777652 1111 234567777888888888888888888765
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=9.7e-06 Score=66.89 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGL--KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
.|++++|+..|+++++.+. +.+...+..+..+|...|++++|+..+++..+.. +.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665421 1134456666666666677777777776666643 224566666666666677777777
Q ss_pred HHHHHHHHc
Q 004791 679 DVLKRMFDA 687 (730)
Q Consensus 679 ~~~~~m~~~ 687 (730)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766666543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1e-05 Score=66.74 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMG--VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|++.|+++++..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777776643 1234556666777777777777777777777765433 5666777777777777777777
Q ss_pred HHHHHHHHC
Q 004791 644 DLIVKMNRE 652 (730)
Q Consensus 644 ~~~~~m~~~ 652 (730)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777663
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=5.8e-05 Score=76.58 Aligned_cols=140 Identities=9% Similarity=-0.058 Sum_probs=94.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+.+.|++++|+..|+++++.-. .. ...... ++..... +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS----------RAAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC----------ccccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 55678888899999999999999999886310 00 000011 1111111 1235567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|++.|+++++.... +...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887754 456777778888888888888888888888775432 566677777777777766666
Q ss_pred HH
Q 004791 643 ED 644 (730)
Q Consensus 643 ~~ 644 (730)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=1.6e-05 Score=83.92 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
+.+.|++++|++.+++.++.. +.+..+|..+..+|.+.|++++|++.+++.++.. +.+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555443 3344555555555555555555555555555543 33455555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQA--YCSIGKLDEAEDLIV 647 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 647 (730)
++.|+++++.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555553221 22233333333 455555555555555
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.98 E-value=0.00021 Score=60.65 Aligned_cols=110 Identities=12% Similarity=0.009 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAE 643 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 643 (730)
++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 33332 5555555556666666666666643 45556666666665 56667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004791 644 DLIVKMNREGIVPDSVTYTLLICAYAH----LGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 644 ~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 688 (730)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777666654 45566666666666 666777777777666654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=0.00012 Score=62.73 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVK------PT-----VYTYTILIEEVLKEGDFDHAHRLLDQMVSL-----GLK 620 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 620 (730)
......+.+.|++++|+..|++.++.... .+ ...|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444455566666666666666553211 02 237888888888888888888888888875 113
Q ss_pred C-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 621 P-DVYTY----TAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 621 p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
| +...| .....++...|++++|+..|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 55677 8899999999999999999999886
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=2.5e-05 Score=78.31 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+.+.|++++|+..|++.+... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556677777778888888888888877643 43321 122333333332221 1367788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICA-YAHLGLIY 675 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~-~~~~g~~~ 675 (730)
|.+.|++++|+..++++++.... +...|..+..+|...|++++|...|+++.+. .| +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998886432 6778888999999999999999999988763 35 45555555555 34456777
Q ss_pred HHHHHHHHHHHc
Q 004791 676 SAFDVLKRMFDA 687 (730)
Q Consensus 676 ~A~~~~~~m~~~ 687 (730)
++...|++|+..
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888753
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=3.8e-05 Score=77.02 Aligned_cols=149 Identities=10% Similarity=-0.006 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+.+.|++++|...|++.+.... +.. .+...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45677778888899999999999999987642 222 1233444444443221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA-YCSIGKLDE 641 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 641 (730)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888765 457788888899999999999999999988765322 44455555555 234566778
Q ss_pred HHHHHHHHHHC
Q 004791 642 AEDLIVKMNRE 652 (730)
Q Consensus 642 A~~~~~~m~~~ 652 (730)
+..+|++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888763
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=4e-05 Score=65.41 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK----------LDEAEDLIVKMNREGIVP-DSVTYTLLICAYAH 670 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~ 670 (730)
+.+++|++.+++.++..+. +...|..+..++...|+ +++|+..|++.++. .| +..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHH
Confidence 3344444444444443322 44444444444444433 34666666666552 33 35555566666655
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 671 L-----------GLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 671 ~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
. |++++|++.|++.++ +.|+...|..-+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4 366777777777665 366666665554433
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00018 Score=75.21 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCC
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVP 656 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~ 656 (730)
.+++.|+..|...|++++|+.++++.++ .|.. | ...+++.|...|..+|++++|..++++..+ .| |
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG--~ 429 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG--P 429 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--T
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC--C
Confidence 4455555566666666666666655553 1211 1 233566667777777777777777766553 23 2
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 D----SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
| ..+...+..++...|++++|..+|+++++
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33345555666667777777777777764
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00092 Score=56.66 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAH 608 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 608 (730)
++++|+.+|++..+.+ .++.. +...|...+.+++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22222 5555555566666777777766653 45566666666666 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 653 (730)
+.|++..+.| +...+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777654 45566667777766 677777777777777765
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=6.6e-05 Score=64.10 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD----------FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
+.+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445666666666666654 4466666666666666554 45888888888876543 6677888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 635 SIG-----------KLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 635 ~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
..| ++++|++.|++.++ +.|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 664 88999999999988 567765554433
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=2.1e-05 Score=63.96 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+..+...+...|++++|++.|++.++..+. +...|..+..++...|++++|++.+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444455555555555555555555543221 444555555555555555555555555554
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00019 Score=75.07 Aligned_cols=124 Identities=13% Similarity=0.031 Sum_probs=74.6
Q ss_pred HHhcCChhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCC-CHHHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSD-----D-CLP-NSYTYNALIDGLYRERKVQEALLLVEKMTK-----MG-VKP-TVYTYTI 593 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~-~~~-~~~~~~~ 593 (730)
+...|++++|+.++++.++. | -.| -..+++.|...|...|++++|..++++.++ .| -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666555431 1 011 234566666777777777777777666553 22 012 2355677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|...|...|++++|+.+++++++ .|.. | ...+.+.+..++...|++++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777765 3322 1 133445666677777888888888888765
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00061 Score=52.54 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
..+..+...+...|++++|+..+++.++.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555543221 44455555555555555555555555555432 12344444444444
Q ss_pred H
Q 004791 669 A 669 (730)
Q Consensus 669 ~ 669 (730)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00043 Score=56.47 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
|++.|+++++..+. +...+..+..+|...|++++|+..+++..+.. +.+...|..++.+|...|++++|...|++.+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444554443221 44455555555555555555555555555432 1234455555555555555555555555554
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00033 Score=57.17 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
...+..+...+...|++++|+..|++.++.... +...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444444444433211 23334444444444444444444444433
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=5.4e-05 Score=61.38 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD------VYTY 626 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 626 (730)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|++.++++++..+. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4455556666666666777776666666543 345666666666777777777777777776664322 2 3344
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~ 644 (730)
..+..++...|+.++|.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444555555554444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.0012 Score=50.88 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA 632 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 632 (730)
...+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3455556666666677777777776666543 345566666677777777777777777777665322 45555555555
Q ss_pred HHhc
Q 004791 633 YCSI 636 (730)
Q Consensus 633 ~~~~ 636 (730)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0025 Score=62.64 Aligned_cols=74 Identities=22% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
+.+..+|..+...+...|++++|...++++...+ |+...|..++..+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3477788888777777899999999999998854 78878888888888899999999999888874 77777654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.19 E-value=0.0017 Score=51.25 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+...+..+...+...|++++|++.|+++++..+. +...|..+..+|...|++++|++.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444555555555555544443322 33344444444445555555554444444
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.19 E-value=0.0018 Score=51.09 Aligned_cols=64 Identities=20% Similarity=0.115 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+...+..+..+|...|++++|++.|+++.+.+ +.+...|..++.+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677777777777777777777777643 22456677777777777777777777777654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.0026 Score=65.37 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EG-IVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.+++.|+.+|...|++++|..++++.++ .| -.|+ ..+++.|+..|..+|++++|+.++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3455555555566666666655555543 12 0111 3445566666666666666666666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.97 E-value=0.013 Score=57.55 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTL 663 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 663 (730)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 5678888888777777899999999999999875 6787888888899999999999999999998 4587777653
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0068 Score=62.34 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLG---LKP----DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-----G-IVPD-SVTYTL 663 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~---~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~~~~~ 663 (730)
+...|++++|++++++.++.. +.| -..+++.|+.+|...|++++|+.+++++++- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334556666666666665421 111 1345666666677777777777777665531 2 1111 445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRMF---DAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~l~~~l 703 (730)
|+..|...|++++|+.++++.+ +.-+.||+.....+...+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 7777777777777777776664 223445555544444443
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.88 E-value=3e-07 Score=91.17 Aligned_cols=265 Identities=14% Similarity=0.161 Sum_probs=166.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
.+.+|+.|.++..+.+++.+|++.|-++ -|...|..++.+..+.|.+++-..++....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3457999999999999999998877322 25556888999999999999999888766554 345566678999
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
+|++.+++.+-.+ ... .||+.-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEe----fl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEE----FIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTS----TTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHH----HHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 9999998776332 222 26777777888888899999888877765432 2334445566777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 327 ALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 327 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|.+.-+ + ..++.||..+-.+|...+++..|...--.++-. ..-...++..|-..|.+++-+.+++.-..
T Consensus 189 AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 665422 1 126677887777888877777665544444322 11222355567777777777777776653
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------ChhhHHHHHHHHHhCCChhHHH
Q 004791 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ-NLSP------TLITYNSLIYGQCREGHLDSAY 468 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 468 (730)
.. ....-.|+.|.-.|++-. .++..+.++-.-.+ +++. ....|.-++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 21 334556666666666542 33333332221111 1111 2334555555565555555544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0036 Score=49.04 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVY-TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...+...|++++|++.++++++.... +.. .|..+..+|...|++++|.+.|++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445556666666666665554322 444 555555666666666666666666655
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.66 E-value=0.0089 Score=61.35 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTK---MGVKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYTAFIQA 632 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~ 632 (730)
|++++|..++++.++ .-+.|+ ..+++.+..+|...|++++|+.+++++++ .|.. | ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555443 111121 34556666666666666666666666654 2221 2 23457777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004791 633 YCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~ 651 (730)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777777654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.024 Score=47.77 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG---KLDEAEDLIVKMNREGIVP--DSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
+..+++-|.+..+.|. ++..+...+.+++.+.+ +.++++.++++..+.+ .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555543 46666666667777766 4556777777766643 23 2455556666677777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 004791 679 DVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 679 ~~~~~m~~~g~~p~~~~~~~l 699 (730)
++++.+++. +|+..--..|
T Consensus 92 ~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHH
Confidence 777777663 6655444444
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.025 Score=58.15 Aligned_cols=90 Identities=9% Similarity=0.025 Sum_probs=61.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMG---VKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYT 627 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~ 627 (730)
.+.+.|++++|+.++++.++.. +.|+ ..+++.++..|...|++++|+.++++++. .|.. | ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445677777777777776421 1222 35667777778888888888888877765 2221 2 244678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|...|..+|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888888764
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.44 E-value=0.0076 Score=47.14 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVY-TYTILIEEVLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 618 (730)
...+.+.|++++|+..++++++.. +.+.. .+..+..++...|++++|++.|+++++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556666667777666666543 33455 66666666667777777777777766643
No 219
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.43 E-value=1.6 Score=48.54 Aligned_cols=256 Identities=14% Similarity=0.098 Sum_probs=116.2
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCChhhHHHHHHH
Q 004791 387 GYCKEGLMEAALQILDLMKSNNCSPN--ARTYNELICGFCKRKNVHRAMSLLNELLEQNL-------SPTLITYNSLIYG 457 (730)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 457 (730)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556666666666665543210112 12222333334444544556666655554211 0111122233333
Q ss_pred HHhCCC-hhHHHHHHHHHHhCCCCCCHHh--HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHh
Q 004791 458 QCREGH-LDSAYKVLHLINESGLVPDQFT--YS--VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID--GYCK 530 (730)
Q Consensus 458 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 530 (730)
..-.|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+.. +..+...+.. ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333332 234455555544421 1111 11 22233445566666666666655432 2223333333 3345
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 531 EGKIDDAHSLLERMLSDDCLPNSYTYN--ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
.|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 677777777776666532 22222222 23334556667666666777766532 223332333333344456655566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL-DEAEDLIVKMNR 651 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 651 (730)
++++.+.+.+ .|....-..+.-+....|+. .+|++++..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6666555432 33333333333333334432 567777777764
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.30 E-value=0.02 Score=44.10 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 622 DVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|...+..+..++...++ .++|..++++..+.. +-+...+..++..+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444432222 345555555555422 11344444444555555555555555555544
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.27 E-value=0.015 Score=48.88 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG---DFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
...+.+.|.+..+.+ +++..+...+..++++.+ ++++++.+|++..+.+ .| ....+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345556666665555 467777777777777777 5667888887777754 23 3445556666778888888888
Q ss_pred HHHHHHHHCCCCCC
Q 004791 644 DLIVKMNREGIVPD 657 (730)
Q Consensus 644 ~~~~~m~~~g~~~~ 657 (730)
++++.+.+ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 88888887 4563
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.23 Score=56.22 Aligned_cols=152 Identities=10% Similarity=0.049 Sum_probs=91.9
Q ss_pred HHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 004791 178 LSKFHLVDEMKR-VYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEK 256 (730)
Q Consensus 178 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 256 (730)
....+++++|.. ++.. .++......++..+.+.|..++|.++.+... .-.....+.|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345677777766 4311 1112233667777778888888876653211 11233456788888
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887655 3567888888888888888888888887753 34455555556666665555444444
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
.| -++....+|.+.|++++|.+++.+
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 123344445555666666655443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.23 E-value=0.024 Score=43.65 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 585 KPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
+.|...+..+..++...++ .++|..++++.++.++. +......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678888889988876665 79999999999997644 78888999999999999999999999999864
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.20 E-value=0.25 Score=46.49 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 004791 604 FDHAHRLLDQMVSLGLKPD---VYTYTAFIQAYCSI-----GKLDEAEDLIVKMNREGIVP--DSVTYTLLICAYAHL-G 672 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~-g 672 (730)
..+|...+++.++. .|+ ...|..++..|.+. |+.++|.+.|++.++ +.| +..++..+...++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 56777777777774 444 55677777777773 888888888888887 445 367777777777774 8
Q ss_pred CHHHHHHHHHHHHHcCCC--CCHH
Q 004791 673 LIYSAFDVLKRMFDAGCE--PSHH 694 (730)
Q Consensus 673 ~~~~A~~~~~~m~~~g~~--p~~~ 694 (730)
+.++|.+.+++.+..... |+..
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChh
Confidence 888888888888876555 5543
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.12 E-value=1.7e-05 Score=78.91 Aligned_cols=468 Identities=13% Similarity=0.092 Sum_probs=264.1
Q ss_pred hccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcc
Q 004791 83 FSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEF 162 (730)
Q Consensus 83 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (730)
+..-.+.++|.+|-..+. .+.+|..+..+....+...+|.. .+.+
T Consensus 35 ~e~i~~ldRa~eyA~~~n-------~p~VWs~LgkAqL~~~~v~eAId-------syIk--------------------- 79 (624)
T 3lvg_A 35 IEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAID-------SYIK--------------------- 79 (624)
T ss_dssp CGGGCCSTTTTTSSSSCC-------CCCCSSSHHHHTTTSSSCTTTTT-------SSCC---------------------
T ss_pred HHhccccHHHHHHHHHhC-------CccHHHHHHHHHHccCchHHHHH-------HHHh---------------------
Confidence 334455556655544332 34568788888777777776632 1111
Q ss_pred ccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 163 SLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
..|+..|..++.+..+.|.+++-+..+.-+.+. ..+...=+.|+-+|++.++..+-.+++ ..|++.-..
T Consensus 80 --A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq 148 (624)
T 3lvg_A 80 --ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQ 148 (624)
T ss_dssp --CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTH
T ss_pred --CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHH
Confidence 235556888888888999999999888655544 234445568999999999987655443 247777778
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
.+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-+ +. -+..||..+-.+|...+
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr---KA---ns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR---KA---NSTRTWKEVCFACVDGK 213 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT---TC---CSSCSHHHHTHHHHHSC
T ss_pred HHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH---hc---CChhHHHHHHHHHhCch
Confidence 889999999999999888876654 4445566777888887776432 22 36788888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILD 402 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (730)
.+.-|.-.--.++-. ..-...++..|-..|.+++-+.+++..+.. -....-.|+-|.-.|++- +.++..+.++
T Consensus 214 EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 214 EFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 887776554444422 222345666778888888888888877632 123566777777777765 3444444333
Q ss_pred HHHh-CCCC------CChhcHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 403 LMKS-NNCS------PNARTYNELICGFCKRKNVHRAMSLL-------------NELLEQNLSPTLITYNSLIYGQCREG 462 (730)
Q Consensus 403 ~m~~-~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~-------------~~~~~~~~~~~~~~~~~li~~~~~~g 462 (730)
..-. .+++ .....|..++-.|++-.+++.|.... .+++.+ ..+...|..-|.-|.+..
T Consensus 287 lf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~ 364 (624)
T 3lvg_A 287 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 364 (624)
T ss_dssp TSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSC
T ss_pred HHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhC
Confidence 2211 1211 13456777777777777777665321 111110 123334444444333321
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH----
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH---- 538 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---- 538 (730)
+..-..++.-+.. .+.+. ..++.+.+.|++.-...++......+ +..+-.++-+.|....+++.-.
T Consensus 365 -P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N---~~aVNeAln~L~IEEEDy~~LR~SId 434 (624)
T 3lvg_A 365 -PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 434 (624)
T ss_dssp -CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSC---CHHHHHHHHHHHHHTTCCHHHHHTTS
T ss_pred -hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHHhh---HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 1111111111111 01100 12333444444443333333332221 3344455556666666655432
Q ss_pred --------HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004791 539 --------SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRL 610 (730)
Q Consensus 539 --------~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 610 (730)
.+-.++.+. +-..--..-...|.+++++++++.+.++ .+ .|.-.|......|+.+-|.++
T Consensus 435 ~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 435 AYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp SCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHH
T ss_pred HhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHH
Confidence 222222221 1222223334446677778777765421 11 122234445567777778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 611 LDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL 645 (730)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 645 (730)
++-.++.| +...|.+.+..|...=+.+.++++
T Consensus 503 L~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 503 LQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 87777754 344566666566555566666554
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.92 E-value=0.55 Score=44.21 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCH
Q 004791 289 VDEALDLFRRMGEDDCRPT---VRTYTVVIFGLCRV-----GRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKE-NKV 359 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 359 (730)
...|...+++..+.+ |+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356777777777654 44 45788888888884 88888888888888876543477777788888774 888
Q ss_pred HHHHHHHHHHHHCCCC--CChhhHHH
Q 004791 360 DEASELLNRMLEKGLF--PNVVTYNA 383 (730)
Q Consensus 360 ~~A~~~~~~~~~~g~~--~~~~~~~~ 383 (730)
++|.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887555 55444333
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.90 E-value=0.12 Score=58.45 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=61.2
Q ss_pred hcCChhHHHH-HHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 250 RNKDVEKGFR-VFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328 (730)
Q Consensus 250 ~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (730)
..+++++|.+ ++..+. +......++..+.+.|..++|.++.+.-. .-.......|++++|.
T Consensus 611 ~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 4556666655 443222 01122555555666666666665442110 1122334556666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 329 EFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 329 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...|...|+.+...++-+...
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 654322 1455666666666666666666666665432 2334444444555554444433333
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.85 E-value=0.4 Score=38.71 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=91.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
.-.|..++..++..+..... +..-||=+|--....-+-+-..+.++..-+. -| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 34677777777777766632 4444444443333344444444444444321 11 12456666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
..+-.+ ..+.......++.+..+|+.++-.+++..+... .+|++.....+..+|.+.|+..+|.+++++.-++|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 666544 224556677778888999999999988886443 46788888899999999999999999999988888
Q ss_pred CC
Q 004791 689 CE 690 (730)
Q Consensus 689 ~~ 690 (730)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.88 Score=39.29 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHhc
Q 004791 238 TFTYTSLILGYCRNKDVEKGFRVFMMM 264 (730)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (730)
...|..|.....+.|+++-|.+.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.49 E-value=0.12 Score=40.65 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREG------IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..++..+...|+++.|..++++..+.- -.+....+..|+.++.+.|++++|..+++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555555555555555555544310 012344555555555555666666665555554
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.45 Score=41.09 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
..-.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3345678888888777654 4677788888888888888888888776543 233444555667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
+-.++-+.....| + ++.....+...|+++++.+++.+.-+ .|.. +-.....|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6666655555443 1 34444556667888888777754332 1111 11122356666777666554
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.32 E-value=0.69 Score=37.40 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 311 YTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
....++.+...|+-++-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.+.-++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444445555555555555555433 2234455555555555555555555555555555543
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.28 E-value=0.097 Score=41.25 Aligned_cols=69 Identities=22% Similarity=0.161 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG------LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+..-+..++..+...|+++.|...|+++++.. ..+...++..|..++.+.|++++|..+++++.+ +.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 33445566666777777777777777666521 122456677777788888888888888888776 3454
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.90 E-value=0.21 Score=41.41 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=61.8
Q ss_pred cChhhHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHHHHHC
Q 004791 271 RNEVSYTNLIHGLCEAKRV------DEALDLFRRMGEDDCRPTVR-TYTVVIF------GLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~ 337 (730)
.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666666 6666666666543 344321 1111111 112336777788888777665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 338 GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP 376 (730)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 376 (730)
.+--...|......-.++|++..|++++...+..+..|
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22236666667777777888888888888877776553
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.73 E-value=0.36 Score=38.94 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE---AEDLIVKMNREGIVP--DSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~ 676 (730)
..+..+.+-|.+....|. ++..+-..+.+++.+..+..+ ++.+++...+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334455555555555443 566666667777777666555 777777766643 23 23444556667777777777
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 004791 677 AFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~ 694 (730)
|.++++.+++. +|+..
T Consensus 93 A~~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 93 ALKYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHh--CCCCH
Confidence 77777777764 66543
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.69 E-value=0.51 Score=39.13 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
++.++|.++|+.+++.+-.- ...|......-.++|+++.|++++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44455555555544321111 444444444445555555555555555555444
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.49 E-value=7.7 Score=43.31 Aligned_cols=279 Identities=15% Similarity=0.046 Sum_probs=145.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC-------CCCHHhHHHHHH
Q 004791 421 CGFCKRKNVHRAMSLLNELLEQN--LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL-------VPDQFTYSVFID 491 (730)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 491 (730)
-+....|+.++++.++.+.+..+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556778888888877766522 112223333444555666666677777766554211 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 492 TLCKRGR-VEEAQVLFDSLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 492 ~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 569 (730)
++.-.|. -+++.+.+..+....-. .....-.+|...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3333332 23455555555543211 001122234445566777777777777766542 12222233333444467888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTY--TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIV 647 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 647 (730)
+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888887777632 2222211 233456677788777777888887642 2233333333334445676666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 004791 648 KMNREGIVPDSVTYTLLICAYAHLGLI-YSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 648 ~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~ 706 (730)
.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-..-+.+|+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 666543 33333333333333434432 677778888764 56666655555555543
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.11 E-value=0.18 Score=40.70 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH---AHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 642 (730)
....+.+-|.+....| .++..+-..+..++.+..+..+ ++.+++.+...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 3666666667777777665554 777777776653 12 233444556677788888888
Q ss_pred HHHHHHHHHCCCCCC
Q 004791 643 EDLIVKMNREGIVPD 657 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~ 657 (730)
.++++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888877 4453
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.87 E-value=6.9 Score=37.48 Aligned_cols=26 Identities=15% Similarity=0.002 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLN 367 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~ 367 (730)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56677777777888888877777653
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.92 E-value=1.6 Score=43.96 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYAFL 699 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 699 (730)
...++..+...|++++|...+..+.... +-+...|..++.+|.+.|+..+|++.|+++. +.|++|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3455666677777777777777777643 3367777777777777888888877777664 35777777654433
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.23 E-value=1.4 Score=33.53 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
.=+..+-++.+...++.|++......+.+|.+.+++.-|+++++-+..+ +.+...+|..++.-+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 4455566666666667777777777777777777777777777766543 333344566665544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.99 E-value=1.1 Score=48.78 Aligned_cols=128 Identities=11% Similarity=-0.027 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHhchhC------CCC-cCh---
Q 004791 206 FNTMINGCCKVGN-VGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD-VEKGFRVFMMMPKK------GCR-RNE--- 273 (730)
Q Consensus 206 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------~~~-~~~--- 273 (730)
...++..+...++ ++.|..+|+++.+.....+......++..+.+.++ --+|.++..+..+. ..+ .+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3444555555556 47788888888876432222222333333333322 12344444333210 111 111
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 274 -------VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEM 334 (730)
Q Consensus 274 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (730)
.....-+..+...|+++-|+++-++..... +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344556677777777777766542 334557777777777777777777666655
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.75 E-value=5.2 Score=32.40 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKL---DEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+++ ++|+..--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 45555555666666655543 34666666666544111244555566667777777777777776665 35655443
Q ss_pred HH
Q 004791 697 AF 698 (730)
Q Consensus 697 ~~ 698 (730)
..
T Consensus 115 ~~ 116 (134)
T 3o48_A 115 GA 116 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.60 E-value=1.7 Score=47.51 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~ 707 (730)
-+..-|..|+....+.++++||.+.|+..+.. .=+...+..|++.|.+.+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 34556999999999999999999999999975 456788999999998765
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.43 E-value=7.9 Score=31.80 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|.-++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444444444
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.34 E-value=3.8 Score=33.20 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 585 KPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 5666676667777777665 446788888877754322355566677788888888888888888887 4564
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.27 E-value=6.7 Score=45.93 Aligned_cols=192 Identities=16% Similarity=0.091 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-------------
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED----DC------------- 304 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~------------- 304 (730)
..++..+.+.|.++-+.++..-.. .+...--.+..+|...|++++|.+.|.+.... +.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345666677777777776654443 24444455677778888888888888765321 00
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 305 -----RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV----HTYTVLIDCLCKENKVDEASELLNRMLEKGLF 375 (730)
Q Consensus 305 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 375 (730)
..-..-|..++..+.+.|.++.++++-...++.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 001134677888888899999988887776654322121 2577788889999999999988888776543
Q ss_pred CChhhHHHHHHHHHhCC------------CHHHHHHHHHHHHhCC--CCCChhcHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 004791 376 PNVVTYNALIDGYCKEG------------LMEAALQILDLMKSNN--CSPNARTYNELICGFCKRKNVHRAMS-LLNELL 440 (730)
Q Consensus 376 ~~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~~~ 440 (730)
-......|+..+|..| ..++..+++..-.+.. ....+.-|..|-..+...|++..|-. +|+.+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3445666666666544 4455556654432211 11112234555555566677665544 455544
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.35 E-value=11 Score=30.96 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
.|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+++. +|+..--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 5678888888888888775 4568889999887542223555667778999999999999999999984 8876544
Q ss_pred HHH
Q 004791 697 AFL 699 (730)
Q Consensus 697 ~~l 699 (730)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.17 E-value=4.4 Score=34.35 Aligned_cols=119 Identities=9% Similarity=-0.025 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNM-VVPNI-------YTFNTMINGCCKVGNVGEAELYVSKIVQAG--LSPDTFT 240 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~ 240 (730)
+-.-++.+...|.++.|+.+...++... ..|+. .++..+.+++...|++..|...|++.++.. +..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4444566778889999988887765431 23332 256778889999999999999999976431 1111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED 302 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (730)
+..+. -....... + ....+...--.+..+|.+.|++++|+.+++.+..+
T Consensus 103 ~~~~~----~~ss~p~s---~------~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTG----NSASTPQS---Q------CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----ccCCCccc---c------cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11110 00000000 0 11133444445778888888888888888876443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.10 E-value=28 Score=35.44 Aligned_cols=164 Identities=14% Similarity=0.128 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSD--DCLPN---SYTYNALIDGLYRERKVQEALLLVEKMTK----MGVKPT--VY 589 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~--~~ 589 (730)
...|...|...|++.+|.+++..+... +.... ...+...+..|...+++.+|..++.++.. ...+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777777787777777776542 11111 23455666777777888888777776532 221222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLG-LKPDVYTYT----AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLL 664 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 664 (730)
.+...+..+...+++.+|...|.++.+.. ...|...+. .++.+..-.+...+-..++.+.......++...|..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 45566677777788888777777665420 111222221 1111111122112222233332222122456677777
Q ss_pred HHHHHhc--CCHHHHHHHHHHH
Q 004791 665 ICAYAHL--GLIYSAFDVLKRM 684 (730)
Q Consensus 665 ~~~~~~~--g~~~~A~~~~~~m 684 (730)
+.+|... .+++...+.|+..
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 7777654 3566666655544
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.42 E-value=31 Score=35.17 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=98.8
Q ss_pred CChhHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----HhcC
Q 004791 462 GHLDSAYKVLHLINES-----GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGY----CKEG 532 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 532 (730)
|++++|++.+..+.+. +..........++..|...|+++...+.+..+.+.... -......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6777787776555432 23344566777888888888888877777665544222 112222333322 2222
Q ss_pred ChhHHHH--HHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHH
Q 004791 533 KIDDAHS--LLERMLS--DD-CLP---NSYTYNALIDGLYRERKVQEALLLVEKMTK--MGVKPT---VYTYTILIEEVL 599 (730)
Q Consensus 533 ~~~~A~~--~~~~~~~--~~-~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~---~~~~~~l~~~~~ 599 (730)
..+.... +.+.... .| +-. .......|...+...|++.+|..++.++.. .|..+. ...+..-+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221111 1111100 11 001 112334566667777777777777777653 221111 234555566777
Q ss_pred HcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVS----LGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777776532 211222 23445556666667777777776666653
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.24 E-value=3 Score=33.63 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
+..+-++.+...++.|++......+.+|.+.+++.-|+++++-+..+ +.+...+|..++.-+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44555556666666777777777777777777777777777766543 344445566555544
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.00 E-value=29 Score=34.50 Aligned_cols=225 Identities=10% Similarity=-0.026 Sum_probs=122.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHH-
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-K---AGEVIYTALIDGYCKE-GKIDDAHSLLERMLSDDCLPNSYTY- 556 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~- 556 (730)
......+...|.+.|+.++..+++......-. . -.......+++.+... +..+.-.++..+.++.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45567788888999999988888877643210 0 0233456677777663 34444455555544311 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH
Q 004791 557 -----NALIDGLYRERKVQEALLLVEKMTKM--GVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQMVSL--GLKPDVY 624 (730)
Q Consensus 557 -----~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 624 (730)
.-++..|...|++.+|.+++.++.+. ..... ...+..-+..|...|++.++...+.+.... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25677888888888888888887752 11111 234555567788888888888888877652 1223333
Q ss_pred HHH----HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHH
Q 004791 625 TYT----AFIQAYC-SIGKLDEAEDLIVKMNREGIVPDSV----TYTLLICAYAHLGLIYSAFDVLKRM-FDAGCEPSHH 694 (730)
Q Consensus 625 ~~~----~l~~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~ 694 (730)
+.. .-+..+. ..+++.+|...|-+..+.--..+.. ....++-+-.-.++..+-..++..= ...--.|+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 222 2223345 6788888888777765311011111 2222333333344443433322211 2222234444
Q ss_pred HHHHHHHHHHcCCh
Q 004791 695 TYAFLIKHLSNKKV 708 (730)
Q Consensus 695 ~~~~l~~~l~~~~~ 708 (730)
.+..++.++.....
T Consensus 258 ~l~~L~~a~~~~dl 271 (394)
T 3txn_A 258 AMKSVAEASHKRSL 271 (394)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCH
Confidence 55666666666544
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.85 E-value=3.3 Score=41.58 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVPDSVTY 661 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 661 (730)
...++..+...|++++|...+..+....+ -+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456677788888888888888877542 3777888888999999999999888888654 4888876653
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.83 E-value=25 Score=33.59 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=18.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 236 PDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
-|+.....+...|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 356666677777777777777776664
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.25 E-value=13 Score=43.57 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------
Q 004791 277 TNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP--------------- 341 (730)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------------- 341 (730)
..++..+.+.|.++-|.++...... +...--.+..++...|++++|.+.|.+... |+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 3466778888999988876654432 344445678889999999999999976531 1100
Q ss_pred --------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 004791 342 --------NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEGLMEAALQILDLMKSNNC 409 (730)
Q Consensus 342 --------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (730)
-..-|..++..+.+.|.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 1234777888999999999999888877765322222 257888999999999999999998887653
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHH
Q 004791 410 SPNARTYNELICGFCKRKNVHRAMS 434 (730)
Q Consensus 410 ~~~~~~~~~li~~~~~~~~~~~A~~ 434 (730)
--......|+..+|..|..+.-..
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhhhhC
Confidence 345667788888888887765543
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.95 E-value=29 Score=33.48 Aligned_cols=25 Identities=16% Similarity=-0.056 Sum_probs=18.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFF 331 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~ 331 (730)
|......+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5566667777777888887777766
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.89 E-value=32 Score=33.16 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=20.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004791 235 SPDTFTYTSLILGYCRNKDVEKGFRVF 261 (730)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (730)
.-|+.....+...|.+.+++.+|..-|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 346666777778888888888887777
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.98 E-value=9.8 Score=32.23 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~ 648 (730)
+..+|.+.|++++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44455555555555555444
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.42 E-value=15 Score=27.94 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
+.-+..+-++.+...+..|++.+..+.+.+|.+.+++.-|.++++-...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445556666666666667777777777777777777777777766654
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.53 E-value=60 Score=32.27 Aligned_cols=93 Identities=12% Similarity=-0.065 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHH--
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDCLP-----NSYTYNALIDGLYRERKVQEALLLVEKMTK--MGVKPTVYTYTI-- 593 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~~-- 593 (730)
.++..|...|++.+|..++.++.+.-... -..++..-+..|...+++.++...+.+... ..+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 45667777777777777776665521011 122344555666677777777777766543 112233322221
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHHH
Q 004791 594 --LIEEVL-KEGDFDHAHRLLDQMV 615 (730)
Q Consensus 594 --l~~~~~-~~g~~~~A~~~~~~~~ 615 (730)
-+..+. ..++|.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 123344 5677777776665554
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.22 E-value=21 Score=26.97 Aligned_cols=78 Identities=10% Similarity=-0.043 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 218 NVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFR 297 (730)
Q Consensus 218 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 297 (730)
.-++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+.- ||...|.+|.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~----pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPW----PALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC----GGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCC----chHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34455555555544432 112222223445677888888777766653 77777766543 46677777777776
Q ss_pred HHhhCC
Q 004791 298 RMGEDD 303 (730)
Q Consensus 298 ~m~~~~ 303 (730)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 766665
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.64 E-value=22 Score=26.91 Aligned_cols=78 Identities=8% Similarity=-0.027 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 218 NVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFR 297 (730)
Q Consensus 218 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 297 (730)
.-++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+.- ||...|.+|.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~----pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAY----PDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC----GGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCC----chHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544432 222222223446677888888887777663 77777766644 46677777777777
Q ss_pred HHhhCC
Q 004791 298 RMGEDD 303 (730)
Q Consensus 298 ~m~~~~ 303 (730)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 776665
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.19 E-value=23 Score=35.95 Aligned_cols=62 Identities=10% Similarity=-0.072 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKM--GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+...+...|.+.|++++|.+.+.++... +...-...+...+..+...+++..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666777777777777666642 2222344555566666666666666666666543
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.60 E-value=48 Score=29.25 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHH
Q 004791 201 PNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLI 280 (730)
Q Consensus 201 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 280 (730)
+|...-...+..+.+.|.. ++...+.++.. .+|..+-...+.++.+.|+.+..-.+.+.+.. ++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~----~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKD----EDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 4555555566666666653 33444444443 24555666666666666654333333333322 5555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVD 360 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 360 (730)
.++.+.|+.+ +...+..+.+. ++...-...+.++.+.|.. ++...+..+.. .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 6666666543 33444444432 3544555555666665553 23444444442 2355555556666666655 3
Q ss_pred HHHHHHHHHHH
Q 004791 361 EASELLNRMLE 371 (730)
Q Consensus 361 ~A~~~~~~~~~ 371 (730)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 44444444444
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.53 E-value=25 Score=26.66 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=27.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
..+...|+|++|..+.+.. ..||...|..|. -.+.|..+++...+.++...|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3445566666666555443 245555555443 235555555555555555444
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.07 E-value=27 Score=28.29 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILI 595 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 595 (730)
+.-+..+-++.+...+..|++.+..+.+.+|.+.+++.-|.++++-...+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555566666666667777777777777777777777777777665421 23334455444
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.31 E-value=30 Score=30.34 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 601 EGDFDHAHRLLDQMVSLGLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP 656 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 656 (730)
.++..++.++|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344556666666666654432 34455666666666677777777776666665555
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.74 E-value=26 Score=35.58 Aligned_cols=99 Identities=16% Similarity=0.056 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHH--H
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSD--DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK---MGVKPTVYT--Y 591 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~--~ 591 (730)
.+...+...|.+.|++++|.+.+.++... +...-...+-..+..+...+++..+...++++.. .+-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36678999999999999999999999874 2233456788888999999999999999988764 232222211 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
..-+..+...+++.+|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122334567888887777766553
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.55 E-value=16 Score=33.76 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=77.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhc
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY----TYTAFIQAYCSI 636 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 636 (730)
....+.|++++|+.....-++.. +.|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~----- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK----- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH-----
Confidence 45668899999999998888876 678888888999999999999999999988875 34332 2333332
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc
Q 004791 637 GKLDEAEDLIVKMNREGIVP-----DSVTYTLLICAY--AHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 687 (730)
|...-.+...-+-.| ...-...++.+. ...|+.++|..+-.++.+.
T Consensus 77 -----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 -----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222233333332222 233334555554 4469999999999988754
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.33 E-value=24 Score=26.67 Aligned_cols=52 Identities=10% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
..+...|+|++|..+.+.. ..||...|..|. -.+.|..+++...+.++...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3445566666666555443 245555555543 245566666665555555544
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.42 E-value=74 Score=27.92 Aligned_cols=171 Identities=11% Similarity=0.030 Sum_probs=104.7
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLI 245 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 245 (730)
++...-...+..+.+.+. .++...+.+++. .+|...-...+.++.+.++. ++...+.++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 344444555566666665 345555555554 35777777777888877764 34444445543 46777778888
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
.++.+.|+.+..-.+.+ +.. .++...-...+.++.+.|..+ +...+..+.+. ++...-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-h
Confidence 88888887654444444 433 267777777788888887754 55555555543 466666667777777776 4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004791 326 EALEFFNEMSARGCEPNVHTYTVLIDCLCKE 356 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 356 (730)
++...+..+.+. ++..+-...+.++.+.
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 566666666653 3555555555555443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.36 E-value=57 Score=28.61 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004791 566 ERKVQEALLLVEKMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP 621 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 621 (730)
.+...++..+|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445778889999988766544 45667777888888999999999999988877666
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.29 E-value=1e+02 Score=28.37 Aligned_cols=7 Identities=29% Similarity=0.093 Sum_probs=2.9
Q ss_pred HHhcCCH
Q 004791 353 LCKENKV 359 (730)
Q Consensus 353 ~~~~g~~ 359 (730)
.+..|+.
T Consensus 112 A~~~~~~ 118 (285)
T 1wdy_A 112 AAVYGKV 118 (285)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 3344443
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.38 E-value=81 Score=26.23 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004791 640 DEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
+++.++|+.|..+|+--. ...|......+-..|++++|.++|+.-++.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 346777777777665443 556666667777777777777777777776666633
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.15 E-value=37 Score=28.73 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 642 AEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
+.++|..|..+||--. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4445555555444332 34444444445555555555555555555444443
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.30 E-value=1.3e+02 Score=27.92 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=21.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 210 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
+...+..|+.+-+..+ ++.|..++...-.+.+...+..|+.+-+..+++
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344455665444333 333433332212233444455566555444443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.01 E-value=1e+02 Score=28.25 Aligned_cols=46 Identities=17% Similarity=-0.040 Sum_probs=20.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhCCCHHHHHH
Q 004791 350 IDCLCKENKVDEASELLNRMLEKGLFPNVVT--YNALIDGYCKEGLMEAALQ 399 (730)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~ 399 (730)
+...+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+-...
T Consensus 76 L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 123 (285)
T 1wdy_A 76 FLLAAIAGSVKL----LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123 (285)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHH
Confidence 344455566543 334444554433211 1123344456666544333
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.55 E-value=1.3e+02 Score=27.73 Aligned_cols=113 Identities=11% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV----YTYTILIEEVLKE 601 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~ 601 (730)
....+.|.+++|++....-++.. |-|...-..++..+|-.|++++|.+-++...+.. |+. .+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 34567788888888887777765 5677777777888888888888888777776643 332 233333332
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKP-----DVYTYTAFIQAY--CSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 651 (730)
+..=.+...-+-.| ...-...++.++ ...|+.++|.++-.++.+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11112222211111 222334444444 345788888877776654
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.17 E-value=1.1e+02 Score=27.26 Aligned_cols=10 Identities=20% Similarity=0.096 Sum_probs=4.2
Q ss_pred HHHhcCCHHH
Q 004791 282 GLCEAKRVDE 291 (730)
Q Consensus 282 ~~~~~g~~~~ 291 (730)
..++.|+.+-
T Consensus 48 ~A~~~~~~~~ 57 (240)
T 3eu9_A 48 WAAINNRIDL 57 (240)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHhCCHHH
Confidence 3344444433
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.43 E-value=95 Score=27.59 Aligned_cols=8 Identities=13% Similarity=-0.056 Sum_probs=3.5
Q ss_pred HHhCCCHH
Q 004791 388 YCKEGLME 395 (730)
Q Consensus 388 ~~~~g~~~ 395 (730)
.++.|+.+
T Consensus 184 A~~~~~~~ 191 (240)
T 3eu9_A 184 AVLAGNTT 191 (240)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 34444443
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.11 E-value=98 Score=27.63 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 004791 212 GCCKVGNVGEAELYVSKIVQAG 233 (730)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~g 233 (730)
..++.|+.+....+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555555554444444
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.57 E-value=1.4e+02 Score=26.13 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=9.0
Q ss_pred CChhHHHHHHHHHHHCC
Q 004791 217 GNVGEAELYVSKIVQAG 233 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g 233 (730)
.+.+.|+-++.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44555555555555555
No 284
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.32 E-value=36 Score=31.24 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=12.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC
Q 004791 213 CCKVGNVGEAELYVSKIVQAGLSPD 237 (730)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~g~~~~ 237 (730)
.++.|+.+....+++.+.+.|...+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445555555555555555444333
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.90 E-value=1.7e+02 Score=26.00 Aligned_cols=84 Identities=13% Similarity=-0.002 Sum_probs=41.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcC
Q 004791 177 QLSKFHLVDEMKRVYLEMLDNMVVPNIYT--FNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFT--YTSLILGYCRNK 252 (730)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g 252 (730)
.-++.|+.+.+..+++...+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... ....+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34566888877777776666665544321 123344455566654 3444445554443211 112233344555
Q ss_pred ChhHHHHHHHhc
Q 004791 253 DVEKGFRVFMMM 264 (730)
Q Consensus 253 ~~~~A~~~~~~m 264 (730)
+.+-...+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 555555554443
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.21 E-value=1.7e+02 Score=27.17 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=20.8
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLF 296 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 296 (730)
+...++.|+.+-+..+++. |..++...-.+.+...+..|+.+-+.-++
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3344456666655555543 22122211123344445556555443333
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.85 E-value=1.4e+02 Score=30.78 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEM 194 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (730)
..+|.+++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 45566666666666666666665555
No 288
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.62 E-value=1.2e+02 Score=26.86 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=7.8
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004791 424 CKRKNVHRAMSLLNELL 440 (730)
Q Consensus 424 ~~~~~~~~A~~~~~~~~ 440 (730)
+..|+...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.01 E-value=99 Score=26.20 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
...|+.+...|...|+.+||+..+..-
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 445677778888999999999887653
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.25 E-value=1.6e+02 Score=24.81 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 292 ALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP 341 (730)
Q Consensus 292 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 341 (730)
+.++|..|...|+-.. ...|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444432221 2233444444444455555555554444444333
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.04 E-value=51 Score=29.49 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004791 640 DEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEP 691 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 691 (730)
+++.++|..|..+||--. ...|......+-..|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355556666666554432 4455555555666666666666666666555555
No 292
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.79 E-value=3.7e+02 Score=28.54 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTL----CKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
+.+.|...+....+.. ..+......+-..+ ...+...++...+........ +.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHHH
Confidence 6778888887765433 22333332222222 233424455555555544332 2222333333344668888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 539 SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
..|+.|..... ......-=+..++.+.|+.++|..+|.++.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887755321 1222222234456677888888888887764
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.74 E-value=1.7e+02 Score=25.05 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=5.4
Q ss_pred HHhCCCHHHHHHH
Q 004791 388 YCKEGLMEAALQI 400 (730)
Q Consensus 388 ~~~~g~~~~A~~~ 400 (730)
.++.|+.+-+..+
T Consensus 113 A~~~~~~~~v~~L 125 (201)
T 3hra_A 113 AAEKGHIDNVKLL 125 (201)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 3344544433333
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.21 E-value=1.3e+02 Score=29.31 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCC
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK--IDDAHSLLERMLSDD 548 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~ 548 (730)
..++.=|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+...+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 34555566666777777666666432111 22333444444443322 233455555555544
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.27 E-value=1.4e+02 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 417 NELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 417 ~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
..++.-|...++.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555666666666666666654
No 296
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.04 E-value=1.4e+02 Score=25.92 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=11.0
Q ss_pred CChhHHHHHHHHHHHCCCCCC
Q 004791 217 GNVGEAELYVSKIVQAGLSPD 237 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g~~~~ 237 (730)
.+.+.|+-++.+|++.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554433
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.48 E-value=1.6e+02 Score=26.38 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 291 EALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 291 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34444444444332221 223444444444444555555544444444333
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.93 E-value=1.3e+02 Score=25.73 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=5.7
Q ss_pred hcCChHHHHHHH
Q 004791 180 KFHLVDEMKRVY 191 (730)
Q Consensus 180 ~~~~~~~a~~~~ 191 (730)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 445555444443
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.23 E-value=3.1e+02 Score=27.75 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=7.2
Q ss_pred CCcchhhhcc
Q 004791 4 RAPAAIFTAF 13 (730)
Q Consensus 4 ~~~~~~~~~~ 13 (730)
+.|++.|.+.
T Consensus 195 eGhaa~F~~~ 204 (494)
T 1bpo_A 195 EGHAASFAQF 204 (494)
T ss_dssp CCSEEEEEEE
T ss_pred eeeeeeeEEE
Confidence 5688888663
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.20 E-value=3.4e+02 Score=26.85 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=19.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIY--TFNTMINGCCKVGNVGEAELYV 226 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~ 226 (730)
+..|..+-+. .+++.|..++.. ...+.+...+..|+.+-+..++
T Consensus 22 a~~g~~~~v~----~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 22 SFMGHLPIVK----NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHTCHHHHH----HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHCCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3445554333 333445444322 1123444455566655444333
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.87 E-value=1.9e+02 Score=26.19 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=17.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
+.......+..+.+.|+-++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44445555666666777777776665543
No 302
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.96 E-value=2e+02 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=11.0
Q ss_pred CChhHHHHHHHHHHHCCCCCC
Q 004791 217 GNVGEAELYVSKIVQAGLSPD 237 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g~~~~ 237 (730)
++.+.|+-++.+|++.|-.|.
T Consensus 49 SDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554433
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.76 E-value=2.4e+02 Score=25.47 Aligned_cols=22 Identities=18% Similarity=-0.004 Sum_probs=13.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 004791 524 LIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~~~ 545 (730)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666666666666666543
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.13 E-value=3.4e+02 Score=30.78 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCC
Q 004791 345 TYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEG 392 (730)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 392 (730)
-|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 6778888899999999998888888764222232 35666777666544
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.10 E-value=60 Score=29.70 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=29.6
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCcChh-------hHHHHHHHHH--hcCCHHHHHHHHHHH
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCRRNEV-------SYTNLIHGLC--EAKRVDEALDLFRRM 299 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~m 299 (730)
+...++.|+.+....+++.+.+.|...+.. -++.|..+.. +.|+.+-+.-+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334556778877777777665555433322 2233333321 557666666666554
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.78 E-value=2.2e+02 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 382 NALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 382 ~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+.++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 345666666777777777777665
No 307
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.03 E-value=98 Score=21.31 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChh
Q 004791 661 YTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVD 709 (730)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~ 709 (730)
++.++..++..--.++++..+.++++.| ..+...|..-++.+++....
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~ 52 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 4555566666556677777777777766 55566676666666665433
No 308
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.59 E-value=2.6e+02 Score=23.96 Aligned_cols=154 Identities=11% Similarity=0.068 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHH
Q 004791 201 PNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLI 280 (730)
Q Consensus 201 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 280 (730)
+|.......+.++.+.+... +...+.++.. .++..+-...+.++.+.|..+..-.+.+.+.. ++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d----~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKD----EDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 45555555555555555432 3333333333 34555555666666666654433333333322 5555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVD 360 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 360 (730)
.++.+.|+.+ +...+..+.. .++...-...+.++.+.|.. ++...+..+.. .++..+-...+.++.+.|. .
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 6666666543 3333333433 23444444555555555543 33444444433 2355555556666666554 3
Q ss_pred HHHHHHHHHHH
Q 004791 361 EASELLNRMLE 371 (730)
Q Consensus 361 ~A~~~~~~~~~ 371 (730)
++...+..+.+
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 44444444443
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.12 E-value=2.4e+02 Score=23.42 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 292 ALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 292 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4444444444332211 223344444444444444444444444444333
No 310
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.71 E-value=2.7e+02 Score=23.69 Aligned_cols=27 Identities=0% Similarity=-0.066 Sum_probs=12.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 004791 280 IHGLCEAKRVDEALDLFRRMGEDDCRP 306 (730)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~~~~~ 306 (730)
+...+..|+.+.-.++.+.+.+.|..+
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCC
Confidence 333444444444444444444444333
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.40 E-value=1.6e+02 Score=23.51 Aligned_cols=22 Identities=14% Similarity=0.230 Sum_probs=11.1
Q ss_pred HHHHHHhcCChhHHHHHHHhch
Q 004791 244 LILGYCRNKDVEKGFRVFMMMP 265 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~ 265 (730)
++.-|...|+.++|.+.++++.
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhC
Confidence 4444545555555555555543
No 312
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=28.29 E-value=2.9e+02 Score=25.30 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC-SIGKLDEAEDLIVKMN 650 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 650 (730)
......+....-+.+++++..+..+++.+.+...+..--|.|-.+|- .-|....+++++..+.
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 33444445555566666666666666665555555555555555552 2344445555554443
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.85 E-value=3.9e+02 Score=27.47 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPNS--YTYN-ALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~-~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
-..++|.++..|...+.++.|..+..+..--.. .++. ..|. .+...+.-.+++.+|.+.+..+.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888888888888888888887642110 1111 1222 2334455677888888887777764
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.41 E-value=4.9e+02 Score=26.19 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=20.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 425 KRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQC 459 (730)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 459 (730)
+.++.+.|+.++.+|++.|..|....-..+..+..
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e 301 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASE 301 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34677777777777777766554443333333333
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.17 E-value=3.1e+02 Score=23.89 Aligned_cols=187 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHH
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYT--VVIFGLC 319 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~ 319 (730)
+..+...++.|+++....+++.-...-...|..-++.|..+..... .++++.+.+.|..++..... +.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhCCCHH
Q 004791 320 RVGRKSEALEFFNEMSARGCEPNVHTYT--VLIDCLCKENKVDEASELLNRMLEKGLFPNVVT--YNALIDGYCKEGLME 395 (730)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 395 (730)
..|+.+ +++.+.+.|..++..... +.+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 396 AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT 447 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (730)
-+..+++.-...+ ..|..-.+.+..+..... .++.+.+++.|..++
T Consensus 154 ~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 154 MVHILLFYKASTN-IQDTEGNTPLHLACDEER-----VEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred HHHHHHhcCCCcc-ccCCCCCCHHHHHHHCCC-----HHHHHHHHHCCCCCC
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.04 E-value=3.3e+02 Score=24.08 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=10.2
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 004791 282 GLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~ 301 (730)
.|.+.|.+++|.++|++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34455555555555555443
No 317
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.58 E-value=3.7e+02 Score=24.52 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG-DFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
++..+-...+.++...++.+ +...+.++.+ .++...-...+.++...| ....+...+.++.+ .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 45555455555555555422 3333334443 244444444455555444 22344455544443 3455555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+.++.+.|.. ++...+..+.+. ++ .-...+.++.+.|. .++...+.++.+
T Consensus 213 ~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 6667776653 344444444432 22 12233445555565 355666666654
No 318
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.52 E-value=3.9e+02 Score=24.38 Aligned_cols=170 Identities=10% Similarity=-0.010 Sum_probs=72.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh----HHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVG----EAELYVSKIVQAGLSPDTFTYTSLILGY 248 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~A~~~~~~~~~~g~~~~~~~~~~li~~~ 248 (730)
..+.++.+.+. .++...+.++++ .++...-...+.++.+.|... ....++..+... .++..+-...+.++
T Consensus 42 ~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 42 SSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIEST 115 (280)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHHHHH
T ss_pred HHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34444444443 345555555554 245555555556666655322 222233321111 24555555555555
Q ss_pred HhcCC-----hhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-
Q 004791 249 CRNKD-----VEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG- 322 (730)
Q Consensus 249 ~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 322 (730)
.+.|. ...+...+..+.. .++..+-...+.++...|+.+ +...+..+... ++...-...+.++.+.|
T Consensus 116 ~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 116 AQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKY 188 (280)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTC
T ss_pred HHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhcc
Confidence 55431 2233343333332 145555555555666655532 33333333332 23333333344444433
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
....+...+..+.. .++..+-...+.++.+.|+
T Consensus 189 ~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 189 DNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC
Confidence 12334444433332 2344444455555555554
No 319
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.28 E-value=3.1e+02 Score=26.70 Aligned_cols=237 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 485 TYSVFIDTLCKRGRVEEAQVLFDSLEKKG-IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
....++.-|...|+.++|...++++.... ..+..+........=.+...-+.+..++..+...++.+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HhcCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 004791 564 YRERKVQ----EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG-- 637 (730)
Q Consensus 564 ~~~~~~~----~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-- 637 (730)
....+.. .|..++.++...-+..+..+...+...+...+...-...+++.+.+..-. ..+...+.+.|
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~------~~l~~l~~~sgl~ 167 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDR------EWLTELFQQSKVN 167 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCH------HHHHHHHHHHTCC
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCH------HHHHHHHHHcCCC
Q ss_pred ----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004791 638 ----------KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707 (730)
Q Consensus 638 ----------~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~ 707 (730)
..+.-.+.++.---..+.|-...-..|.......-..++..++.+.-......++....+.|+.++++.-
T Consensus 168 l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~~ 247 (364)
T 3l6a_A 168 MQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 247 (364)
T ss_dssp SGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHH
Q ss_pred -----------------hhhhhhhccchhhhHHHHhh
Q 004791 708 -----------------VDERKQQCDGILFGFKCLIS 727 (730)
Q Consensus 708 -----------------~~e~~~~~~~~l~~~~~~~~ 727 (730)
.++..+.....+..+.-++.
T Consensus 248 ~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~ 284 (364)
T 3l6a_A 248 SSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQ 284 (364)
T ss_dssp HHHHC----------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccccccccccHHHHHHHHHHHHHHHHHHH
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.53 E-value=2.7e+02 Score=22.21 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK--LDEAEDLIVKMNREGIV 655 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~ 655 (730)
..++.-|...|+.++|.+.++++..-... ...+...+..++-+.+. .+....++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34555555666666666666665310000 12233334444444321 34455566666655543
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.11 E-value=2.5e+02 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 004791 557 NALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m 579 (730)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444444445555555555444
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.81 E-value=7.8e+02 Score=27.76 Aligned_cols=108 Identities=12% Similarity=0.007 Sum_probs=70.7
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR------------------ 305 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------ 305 (730)
++..+...|.++-|.++..-.. .++..--.+..+|...|++++|.+.|++... |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 5566667777776666544333 3444434567777888888888888876532 111
Q ss_pred -----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcC
Q 004791 306 -----PTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV----HTYTVLIDCLCKEN 357 (730)
Q Consensus 306 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g 357 (730)
....-|..++..+-+.+.++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01126788999999999999999998888865322233 35677777777655
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.52 E-value=3.9e+02 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYC 529 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 529 (730)
.+.+.|+-.+.+|++.| .|.......++.+.-
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE 59 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYE 59 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 45555555555555555 443333333333333
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.44 E-value=3.9e+02 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=13.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC
Q 004791 385 IDGYCKEGLMEAALQILDLMKSNN 408 (730)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~ 408 (730)
+...+..|+.+-+..+++.+.+.|
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC
Confidence 344455566665555555555554
No 325
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.66 E-value=2.2e+02 Score=25.16 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=93.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCh
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIY--TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFT--YTSLILGYCRNKDV 254 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~ 254 (730)
++.|+.+ +++.+++.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.
T Consensus 19 ~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 90 (237)
T 3b7b_A 19 AEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKGHY 90 (237)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHHHTTCH
T ss_pred HHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence 3445554 333444555444332 112344445556765544 34445554333211 12234445566776
Q ss_pred hHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHH
Q 004791 255 EKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR--TYTVVIFGLCRVGRKSEALEFFN 332 (730)
Q Consensus 255 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 332 (730)
+-+..+++.-...-...+..-+ +.+...+..|+.+-+..++ +.|..++.. .-.+.+...+..|+.+ +.+
T Consensus 91 ~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~ 161 (237)
T 3b7b_A 91 EVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLL----SKGSDINIRDNEENICLHWAAFSGCVD----IAE 161 (237)
T ss_dssp HHHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHCCHH----HHH
T ss_pred HHHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHCCCHH----HHH
Confidence 6655555432110000122122 2334445566665444433 333333221 1112233344556544 444
Q ss_pred HHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 333 EMSARGCEPNVHT--YTVLIDCLCKENKVDEASELLNRMLEKGLFPNVV--TYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 333 ~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
.+.+.|..++... -.+.+...++.|+.+-+ +.+.+.|..++.. .-.+-+...+..|+...+.++.+.+.+
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555665554321 12344555666776544 3444555444322 112344555677778888888777764
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.52 E-value=1.5e+02 Score=24.61 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHhc
Q 004791 244 LILGYCRNKDVEKGFRVFMMM 264 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m 264 (730)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444445555555555544
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.36 E-value=4.8e+02 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChhHHHHHHHhch
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMP 265 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~ 265 (730)
.++.-|...|+.++|.+.++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34455555566666666665554
No 328
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.14 E-value=5.3e+02 Score=24.57 Aligned_cols=218 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
.+.+...+..|+.+....+++. ...+......-.+.+...+..|+. ++++.+.+.|..++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-------------------hhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhh
Q 004791 322 GRKSEALEFFNEMSARGCEPNV-------------------HTYTVLIDCLCKEN--KVDEASELLNRMLEKGLFPNVVT 380 (730)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~~~~-------------------~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~ 380 (730)
|+.+-+..+++.....|..++. ..-.+.+...+..| +.+-+..+++. ...+......
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~ 172 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKA 172 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTT
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCC
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--H
Q 004791 381 YNALIDGYCKEGLMEAALQILDLMKS-----NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYN--S 453 (730)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ 453 (730)
-.+.+...+..|+.+-+..+++.-.. .+ ..|..-.+.|..+..... .++.+.+++.|..++..... +
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~t 246 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTV 246 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCC
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 004791 454 LIYGQCREGHLDSAYKVLHL 473 (730)
Q Consensus 454 li~~~~~~g~~~~a~~~~~~ 473 (730)
-+...+..|+.+-+..+++.
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHc
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.66 E-value=4.2e+02 Score=23.04 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALI 525 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li 525 (730)
.+.+.|+-.+.+|++.|-.|.......++
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44555555555555555444333333333
No 330
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.29 E-value=4e+02 Score=24.45 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLG--LKPDVYTYTAFIQAYC-SIGKLDEAEDLIVKMN 650 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 650 (730)
....++....+.+++++..+.++++.+.+ ...+..--+.|..+|- .-|....+++++..+.
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 33445555566677777777777766655 4555555555555553 2344455555555544
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.27 E-value=3.8e+02 Score=22.41 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=30.2
Q ss_pred cCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 004791 531 EGKIDDAHSLLERMLSDDCLP--NSYTYNALID-G-----LYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~A~~~~~~m~~ 581 (730)
.|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 477777777777766554334 3445555555 2 2346677777777766654
No 332
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.21 E-value=6.3e+02 Score=24.85 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=38.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhc
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFT--YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 286 (730)
.+...+..|+.+-...+ ++.|..++... ..+.+...++.|+.+-+..+++.-..... .+... .+.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g-~t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD-QTPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTS-CCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCC-CCHHHHHHHC
Confidence 44455566776544443 44555444221 12334445566777666655553221110 11111 1234444566
Q ss_pred CCHHHHHHHHHH
Q 004791 287 KRVDEALDLFRR 298 (730)
Q Consensus 287 g~~~~A~~~~~~ 298 (730)
|+.+-+.-+++.
T Consensus 91 g~~~~v~~Ll~~ 102 (437)
T 1n11_A 91 GHTNMVKLLLEN 102 (437)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHhC
Confidence 666554444443
No 333
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.00 E-value=2.9e+02 Score=24.85 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS-IGKLDEAEDLIVKMN 650 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~ 650 (730)
...++....+.+++++..+.++++.+.+...+..--+.|..+|-. -|....+++++..+.
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissie 68 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 68 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334455556667777777777776666555566666666655532 344445555555443
Done!