Your job contains 1 sequence.
>004792
MAAAASSSEVSMKSCNETGRIPMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTV
PREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQ
VTLLPESNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPL
DMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG
ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEF
IVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKV
RWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREGSSK
LNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASR
RYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVAR
PWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLM
PPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRNTMN
EPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGST
RSCTKVPLPH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004792
(730 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 2349 8.9e-244 1
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 1327 4.0e-138 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 1201 1.3e-126 2
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 1163 7.5e-120 2
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 1155 2.5e-119 2
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 1041 5.7e-111 3
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 997 6.4e-106 3
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 975 1.8e-101 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 939 3.4e-101 3
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 969 7.5e-101 2
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 1000 7.9e-101 1
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 961 6.7e-100 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 982 6.4e-99 1
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 942 9.7e-99 2
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 971 9.4e-98 1
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 961 1.1e-96 1
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 694 2.9e-88 3
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 491 2.5e-68 3
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 497 9.0e-67 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 567 6.1e-55 1
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 406 2.6e-46 2
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 145 5.3e-07 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 143 1.3e-06 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 138 2.9e-06 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 138 6.9e-06 2
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 134 7.1e-06 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 126 4.2e-05 2
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 126 8.8e-05 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 124 0.00014 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 120 0.00044 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 114 0.00066 2
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 2349 (831.9 bits), Expect = 8.9e-244, P = 8.9e-244
Identities = 470/717 (65%), Positives = 539/717 (75%)
Query: 24 EGQNSNSTTSGV-KRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEAST 82
EGQ SNST S +R DPE ALY ELWHACAGPLVTVPR+ +RV+YFPQGHIEQVEAST
Sbjct: 36 EGQKSNSTRSAAAERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEAST 95
Query: 83 NQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXX 142
NQ A+QQMP+YDLPSK+LCRVINV LKAE DTDEV+AQ+TLLPE+NQDENA+EKE
Sbjct: 96 NQAAEQQMPLYDLPSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPP 155
Query: 143 XXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWR 202
RF VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLH NEWR
Sbjct: 156 PPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWR 215
Query: 203 FRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSS 262
FRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSS
Sbjct: 216 FRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSS 275
Query: 263 VISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFK 322
VISSHSMHLGVLATAWHA+STGTMFTVYYKPRTSPSEFIVP+DQYMES+KNNYSIGMRFK
Sbjct: 276 VISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFK 335
Query: 323 MRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXX 382
MRFEGEEAPEQRFTGTIVGIE++DP RW SKWR LKVRWDETS+IPRP+RVS WK+E
Sbjct: 336 MRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPA 395
Query: 383 XXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFST 442
RPKRPRSN+ PSSPDSS+LTREG++K N+DP A+G SRVLQGQE+ST
Sbjct: 396 LAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYST 455
Query: 443 LRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLS 502
LR E S E D E SVVW S DD+K+DVVS SRRYGSENW+ RHEP YTDLLS
Sbjct: 456 LRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLS 513
Query: 503 GFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESN 557
GFG N DPSHG PF D ++P ++ + D EGKF+ +A W ++ SG SLK+ ES
Sbjct: 514 GFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES- 572
Query: 558 AKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFEN------S 611
KVP D + Q R NV+Y +YP+LNG E++ GNW + P + +E
Sbjct: 573 PKVPA-ATDASLQGRCNVKYS---EYPVLNGLSTENAGGNWPIRPRALNYYEEVVNAQAQ 628
Query: 612 AHSRELMPKSAMVQDQEAGKSKD--CKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQ 669
A +RE + K +E KS++ C+LFGIPL +N + +S RN +N+ AG Q
Sbjct: 629 AQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNNLNDAAGLT--Q 686
Query: 670 FRAFEXXXXXXXXXXXXLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKV 726
+ + +D++ E +P Q + H KD ++KT S+RSCTKV
Sbjct: 687 IASPKVQDLSDQSKGSKSTNDHR---EQGRPFQTNNPHPKDAQTKTN--SSRSCTKV 738
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 1327 (472.2 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
Identities = 269/447 (60%), Positives = 321/447 (71%)
Query: 44 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRV 103
AL ELWHACAGPLVT+PREGERVYYFP+GH+EQ+EAS +Q +QQMP ++LPSKILC+V
Sbjct: 18 ALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKV 77
Query: 104 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 163
IN+Q +AEP+TDEV+AQ+TLLPE +Q E + + VHSFCKTLTASDTSTH
Sbjct: 78 INIQRRAEPETDEVYAQITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 136
Query: 164 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 223
GGFSVLRRHAD+CLPPLDMS+QPP QEL A DLH +EW FRHIFRGQPRRHLL +GWSVF
Sbjct: 137 GGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVF 196
Query: 224 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 283
VSSK+LVAGDAFIFLRGEN ELRVGVRR MRQQ N+PSSVISSHSMH+GVLATA HA++T
Sbjct: 197 VSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITT 256
Query: 284 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 343
GT+F+V+YKPRTS SEFIV ++Y+E+ S+GMRFKMRFEGEEAPE+RF+GTIVG++
Sbjct: 257 GTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQ 316
Query: 344 DADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXX--XRPKRPRS 401
+ W DS+WR LKV+WDE S++ RPERVS W++E R KRPR
Sbjct: 317 ENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRP 376
Query: 402 NMLPS--SPDSSVLTREGSSKLNVD-PSSATGFSRVLQGQEFSTLRGNFAERESNESDTA 458
LPS + S +T +G K D PSS FS + F GN +
Sbjct: 377 PGLPSPATGPSGPVTPDGVWKSPADTPSSVPLFSPPAKAATFGH-GGN------KSFGVS 429
Query: 459 EKSVVWPPSLDDEKIDVVSASRRYGSE 485
S WP + D SA +E
Sbjct: 430 IGSAFWPTNADSAAESFASAFNNESTE 456
Score = 46 (21.3 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 695 NEHEKPSQPSQTHTKDVRS--KTQCGSTRSCTKV 726
N+ + PS +RS ++Q RSCTKV
Sbjct: 514 NQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKV 547
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 1201 (427.8 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 236/418 (56%), Positives = 300/418 (71%)
Query: 45 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQM-PVYDLPSKILCRV 103
LY ELW CAGPLV VP+ ERVYYFPQGH+EQ+EAST QV M P++ LP KILC V
Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNV 68
Query: 104 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 163
+NV L+AE DTDEV+AQ+TL+P + + + + R VHSF K LTASDTSTH
Sbjct: 69 MNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTH 128
Query: 164 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 223
GGFSVLR+HA ECLPPLDM++Q PTQEL A+D+HG +W+F+HIFRGQPRRHLL +GWS F
Sbjct: 129 GGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTF 188
Query: 224 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 283
V+SKRLVAGD F+FLRGENGELRVGVRRA QQ ++PSSVISSHSMHLGVLATA HA T
Sbjct: 189 VTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQT 248
Query: 284 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 343
TMF VYYKPRTS +FI+ ++Y+E++ N +S+GMRFKMRFEGE++PE+R++GT++G++
Sbjct: 249 KTMFIVYYKPRTS--QFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVK 306
Query: 344 DADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNM 403
D P W+DSKWRCL+V WDE ++I RP +VS W+IE + KRPR
Sbjct: 307 DCSPH-WKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFVNSENVPKSVMLKNKRPRQVS 365
Query: 404 LPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKS 461
S+ D + S + P F++ ++S+ + R++NE A+KS
Sbjct: 366 EVSALDVGITASNLWSSVLTQPHE---FAQSCITSQWSSPQQ--CHRDANED--AKKS 416
Score = 63 (27.2 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 698 EKPSQPSQTHTKDVRSKTQCGSTRSCTKVPL 728
EK +P++ K+V+SK Q STRS TKV +
Sbjct: 501 EKKQEPAEGSPKEVQSK-QSSSTRSRTKVQM 530
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 1163 (414.5 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 237/419 (56%), Positives = 295/419 (70%)
Query: 45 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRV 103
LYTELW CAGPLV VPR ERV+YFPQGH+EQ+ ASTNQ + +++PV+DLP KILCRV
Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRV 81
Query: 104 INVQLKAEPDTDEVFAQVTLLPESNQDE-NAVEKEXXXXXXXRFHVHSFCKTLTASDTST 162
++V LKAE +TDEV+AQ+TL PE +Q E +++ FH SF K LTASDTST
Sbjct: 82 LDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIVGPTKQEFH--SFVKILTASDTST 139
Query: 163 HGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSV 222
HGGFSVLR+HA ECLP LDM++ PTQEL +DLHG EWRF+HIFRGQPRRHLL +GWS
Sbjct: 140 HGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWST 199
Query: 223 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 282
FVSSKRLVAGDAF+FLRGENG+LRVGVRR R Q +P+SVISS SMHLGVLATA HAV
Sbjct: 200 FVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVR 259
Query: 283 TGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGI 342
T T+F V+YKPR S +FIV ++YME+IK+ +S+G RF+MRFEGEE+PE+ FTGTIVG
Sbjct: 260 TTTIFVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERIFTGTIVGS 317
Query: 343 EDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSN 402
D Q W SKWR L+V+WDE +T+ RP++VS W+IE ++P+S
Sbjct: 318 GDLSSQ-WPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPA----QQPQSK 372
Query: 403 MLPSSP-DSSVLTREGSSKLNVDPSSATGFS---RVLQGQEFSTLRGNFAERESNESDT 457
S P + SV T S L P S + ++ Q + G ++ S + +T
Sbjct: 373 CKRSRPIEPSVKTPAPPSFLYSLPQSQDSINASLKLFQDPSLERISGGYSSNNSFKPET 431
Score = 37 (18.1 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 636 KLFGIPLFSNHVMPEPVVSHRNTMN 660
+LFG L SN P P+ + M+
Sbjct: 441 RLFGFDLTSNS--PAPIPQDKQPMD 463
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 1155 (411.6 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 230/393 (58%), Positives = 286/393 (72%)
Query: 38 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLP 96
+G + LYTELW ACAGPLV VPR GERV+YFPQGH+EQ+ ASTNQ V DQ++PV++LP
Sbjct: 32 LGSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLP 91
Query: 97 SKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLT 156
KILCRV++V LKAE +TDEV+AQ+TL PE +Q E + + V SF K LT
Sbjct: 92 PKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPLVEPAKPTVDSFVKILT 150
Query: 157 ASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL 216
ASDTSTHGGFSVLR+HA ECLP LDM++ PTQEL A+DLHG EWRF+HIFRGQPRRHLL
Sbjct: 151 ASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLL 210
Query: 217 QSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLAT 276
+GWS FV+SKRLVAGDAF+FLRGE G+LRVGVRR +QQ +P+SVISS SM LGVLAT
Sbjct: 211 TTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLAT 270
Query: 277 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFT 336
A HAV+T T+F V+YKPR S +FI+ ++YM ++KN +S+GMR++MRFEGEE+PE+ FT
Sbjct: 271 ASHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERIFT 328
Query: 337 GTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRP 396
GTI+G D Q W SKWR L+++WDE S+I RP +VS W+IE +
Sbjct: 329 GTIIGSGDLSSQ-WPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQS 387
Query: 397 KRPRS---NMLPSSPDSSVLTREGSSKLNVDPS 426
K RS + + SP +S S +PS
Sbjct: 388 KSKRSRPISEITGSPVASSFLSSFSQSHESNPS 420
Score = 40 (19.1 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 605 PSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFS 644
P+ NS ++ + + EA + C+LFG L S
Sbjct: 428 PATERNS--NKSVFSSGLQCKITEAPVTSSCRLFGFDLTS 465
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 1041 (371.5 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 208/436 (47%), Positives = 285/436 (65%)
Query: 17 ETGRIPMEGQNSNSTTSGVKRVGDPE---MALYTELWHACAGPLVTVPREGERVYYFPQG 73
+ GR+ + +S+S +SG ++Y+ELWHACAGPL +P++G V YFPQG
Sbjct: 31 DKGRLGISPSSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQG 90
Query: 74 HIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLP-------- 125
H+EQ +A + + ++P +DL +I+CRV+NVQL A DTDEV+ QVTLLP
Sbjct: 91 HLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLN 149
Query: 126 -ESNQ-DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMS 183
E + E E+E + H FCKTLTASDTSTHGGFSV RR A++C PLD
Sbjct: 150 GEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYK 209
Query: 184 RQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENG 243
+Q P+QEL AKDLHG EW+FRHI+RGQPRRHLL +GWS+FVS K LV+GDA +FLR E G
Sbjct: 210 QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGG 269
Query: 244 ELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 303
ELR+G+RRA R + +P S+I +S +L+ +AVST +MF V+Y PR + +EF++P
Sbjct: 270 ELRLGIRRAARPRNGLPDSIIEKNSCS-NILSLVANAVSTKSMFHVFYSPRATHAEFVIP 328
Query: 304 YDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWD 363
Y++Y+ SI++ IG RF+MRFE +++PE+R G + G+ D DP RW +SKWRCL VRWD
Sbjct: 329 YEKYITSIRSPVCIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWD 388
Query: 364 ETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTREGSSKLNV 423
E+ ERVS W+I+ RPKRP + +L ++P + +T+ G L+
Sbjct: 389 ESFVSDHQERVSPWEIDPSVSLPHLSIQSSPRPKRPWAGLLDTTPPGNPITKRGGF-LDF 447
Query: 424 DPSSATGFSRVLQGQE 439
+ S S+VLQGQE
Sbjct: 448 EESVRP--SKVLQGQE 461
Score = 48 (22.0 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 431 FSRVLQGQEFSTLRG--NFAERESNESDT-----AEKSVVWPPSLDDEKIDVVSASRRY- 482
F RVLQGQE +L+ FA + A KS +P +L + V Y
Sbjct: 523 FPRVLQGQEICSLKSFPQFAGFSPAAAPNPFAYQANKSSYYPLALHGIRSTHVPYQNPYN 582
Query: 483 -GSENWVPPGR 492
G+++ PP R
Sbjct: 583 AGNQSSGPPSR 593
Score = 41 (19.5 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 713 SKTQCGSTRSCTKV 726
SK Q S R CTKV
Sbjct: 657 SKPQSSSKRICTKV 670
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 997 (356.0 bits), Expect = 6.4e-106, Sum P(3) = 6.4e-106
Identities = 190/382 (49%), Positives = 259/382 (67%)
Query: 27 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVA 86
N+ SG+ + + +Y +LW CAGPL +P+ GE+VYYFPQGHIE VEAST +
Sbjct: 8 NTQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREEL 65
Query: 87 DQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF 146
++ P+ D PSK+ CRVI +QLK E ++DE +A++TL+P++ Q + + R
Sbjct: 66 NELQPICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNQNQF----RP 121
Query: 147 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHI 206
V+SF K LTASDTS HGGFSV ++HA ECLPPLDMS+ PTQE+ A DLHGN+WRFRHI
Sbjct: 122 LVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHI 181
Query: 207 FRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISS 266
+RG +RHLL GW+ F +SK+LV GD +F+RGE GELRVG+RRA QQGN+PSS++S
Sbjct: 182 YRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSI 241
Query: 267 HSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFE 326
SM G++A+A HA MF V YKPR+S +FIV YD++++ + N +++G RF MRFE
Sbjct: 242 ESMRHGIIASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDVVNNKFNVGSRFTMRFE 299
Query: 327 GEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXX 386
G++ E+R GTI+G+ D P W+ S+WR L+V+WDE ++ PRP +VS W IE
Sbjct: 300 GDDFSERRSFGTIIGVSDFSPH-WKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHLTPWS 358
Query: 387 XXXXXXXXRPKRPRS-NMLPSS 407
+ KR R N + SS
Sbjct: 359 NVSRSSFLKNKRSREVNEIGSS 380
Score = 48 (22.0 bits), Expect = 6.4e-106, Sum P(3) = 6.4e-106
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 710 DVRSKTQCGSTRSCTKVPL 728
+++SK Q STR+CTKV +
Sbjct: 500 EIQSK-QFSSTRTCTKVQM 517
Score = 37 (18.1 bits), Expect = 6.4e-106, Sum P(3) = 6.4e-106
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 636 KLFGIPLFSNHVMPEPV 652
+LFG+ L + V+ +PV
Sbjct: 457 RLFGVSLATPSVIKDPV 473
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 975 (348.3 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 184/354 (51%), Positives = 253/354 (71%)
Query: 27 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVA 86
N+ SG+ + + +Y +LW CAGPL +P+ GE++YYFPQG+IE VEAST +
Sbjct: 8 NAQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREEL 65
Query: 87 DQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF 146
++ P+ DLPSK+ CRVI +QLK E ++DE +A++TL+P++ Q + E R
Sbjct: 66 NELKPICDLPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RP 121
Query: 147 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHI 206
V+SF K LTASDTS GGF V ++HA ECLPPLDMS+ PTQEL A DLHGN+WRF H
Sbjct: 122 LVNSFTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHN 179
Query: 207 FRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISS 266
+RG P+RHLL +GW+ F +SK+LVAGD +F+RGE GELRVG+RRA QQGN+PSS+IS
Sbjct: 180 YRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISI 239
Query: 267 HSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFE 326
SM GV+A+A HA MF V YKPR+S +FIV YD++++++ N +++G RF MRFE
Sbjct: 240 ESMRHGVIASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFE 297
Query: 327 GEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE 380
G++ E+R+ GTI+G+ D P W+ S+WR L+V+WDE ++ RP +VS W+IE
Sbjct: 298 GDDFSERRYFGTIIGVSDFSPH-WKCSEWRNLEVQWDEFASFSRPNKVSPWEIE 350
Score = 51 (23.0 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 642 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD-DNQV-- 693
L S V P P +++ N M + N+ + FR F + + +++
Sbjct: 422 LMSYPVQPMPKLNYNNQMVTQIEENITTKTGTNFRLFGVSLVTPSVIKDPIEEIGSEISK 481
Query: 694 FNEHEKPSQPSQT--HTKDVRSKTQCGSTRSCTKVPL 728
E +K Q SQT +++SK Q STR+CTKV +
Sbjct: 482 LTEGKKFGQ-SQTLRSPTEIQSK-QFSSTRTCTKVQM 516
Score = 37 (18.1 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 636 KLFGIPLFSNHVMPEPV 652
+LFG+ L + V+ +P+
Sbjct: 456 RLFGVSLVTPSVIKDPI 472
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 939 (335.6 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 193/401 (48%), Positives = 249/401 (62%)
Query: 48 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQ 107
ELWHACAGPL+++P+ G V YFPQGH+EQ D +Y LP + CR+++V+
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIYGLPPHVFCRILDVK 106
Query: 108 LKAEPDTDEVFAQVTLLPESNQDENAVEK--------EXXXXXXXRFHV-HSFCKTLTAS 158
L AE TDEV+AQV+LLPES E V + E R + H FCKTLTAS
Sbjct: 107 LHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTAS 166
Query: 159 DTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQS 218
DTSTHGGFSV RR A++C PPLD S+ P+QEL A+DLHG EWRFRHI+RGQPRRHLL +
Sbjct: 167 DTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTT 226
Query: 219 GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAW 278
GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA + +G S + +M+ +
Sbjct: 227 GWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVA 286
Query: 279 HAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGT 338
HA+ST ++F++ Y P+ S S FI+P ++++ + + IGMRFK R E E+A E+R G
Sbjct: 287 HAISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGI 346
Query: 339 IVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKR 398
I GI D DP RW SKWRCL VRWD+ +RVS W+IE PKR
Sbjct: 347 ISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKR 406
Query: 399 PRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQE 439
R PD V EG + + S F RVLQGQE
Sbjct: 407 SRIGFSSGKPDIPV--SEGIRATDFEESLR--FQRVLQGQE 443
Score = 53 (23.7 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 603 LPPSNFENSAHSRELMPKS----AMVQDQEAGKSKDCKLFGIPL 642
LPPS +S+ S L+ S ++D G + C+LFG PL
Sbjct: 517 LPPS--VSSSPSSVLLTNSNSPNGRLEDHHGGSGR-CRLFGFPL 557
Score = 45 (20.9 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 409 DSSVLTREGSSKLNVDPSSATGFSRVLQGQE 439
D R G K + + GF +VLQGQE
Sbjct: 454 DGGAGARRGRFK-GTEFGDSYGFHKVLQGQE 483
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 969 (346.2 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 187/382 (48%), Positives = 256/382 (67%)
Query: 27 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVA 86
N+ SG+ + + +Y +LW CAGPL +P+ GE+VYYFPQGHIE VE ST +
Sbjct: 8 NAQPELSGI--IDGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREEL 65
Query: 87 DQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF 146
++ P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q + E R
Sbjct: 66 NELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RP 121
Query: 147 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHI 206
V+SF K LTASDTS HGGF V ++HA ECLP LDMS+ P QEL A DLHGN+WRF H
Sbjct: 122 LVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHN 181
Query: 207 FRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISS 266
+RG P+RHLL +GW+ F +SK+LVAGD +F+RGE GELRVG+RRA QQGN+PSS++S
Sbjct: 182 YRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSI 241
Query: 267 HSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFE 326
M GV+A+A HA MFTV YKPR+S +FIV YD++++++ N +++G RF MR E
Sbjct: 242 DCMRHGVVASAKHAFDNQCMFTVVYKPRSS--KFIVSYDKFLDAVNNKFNVGSRFTMRLE 299
Query: 327 GEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXX 386
G++ E+R GTI+G+ D P W+ S+WR L+V+WDE ++ P P++VS W IE
Sbjct: 300 GDDFSERRCFGTIIGVSDFSPH-WKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHLMPAI 358
Query: 387 XXXXXXXXRPKRPRS-NMLPSS 407
+ KR R N + SS
Sbjct: 359 NVPRSFLLKNKRLREVNEIGSS 380
Score = 51 (23.0 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 35/144 (24%), Positives = 62/144 (43%)
Query: 594 SHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVV 653
S + L+PP+ EN S P + ++ ++A ++D L S V P P +
Sbjct: 379 SSSSHLLPPILTQGQENEQLS-VASPMNISLRYRDA--TEDAMNPSKLLMSYPVQPMPKL 435
Query: 654 SHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD-DNQVFNEHE-KPSQPSQT 706
++ N M E N+ + FR F + + +++ E K SQT
Sbjct: 436 NYNNQMVTEMEENITTKTGTNFRLFGVTLDTPPVIKDPIEEIGSEISKLTEGKKFGLSQT 495
Query: 707 --HTKDVRSKTQCGSTRSCTKVPL 728
++++K Q S+R+CTKV +
Sbjct: 496 LRSPTEIQNK-QFSSSRTCTKVQM 518
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 202/390 (51%), Positives = 263/390 (67%)
Query: 20 RIPMEGQNSNS-TTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQV 78
R+ G N +G KRV L +ELWHACAGPLV++P G RV YFPQGH EQV
Sbjct: 2 RLSSAGFNPQPHEVTGEKRV------LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQV 55
Query: 79 EASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKE 137
ASTN+ D +P Y L +++C++ NV + A+ +TDEV+AQ+TL P + Q++
Sbjct: 56 AASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLP 115
Query: 138 XXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLH 197
R + FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL A+DLH
Sbjct: 116 AELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLH 175
Query: 198 GNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQG 257
NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ + +L +G+RRA R Q
Sbjct: 176 DNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQT 235
Query: 258 NVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNN-YS 316
+PSSV+SS SMHLG+LA A HA +T + FT++Y PR SPSEF++P +Y++++ + S
Sbjct: 236 VMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVS 295
Query: 317 IGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSL 376
+GMRF+M FE EE+ +R+ GTI GI D DP RW +S WR +KV WDE++ R RVSL
Sbjct: 296 VGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSL 355
Query: 377 WKIEXXXXXXXXXXXXXXRPKRPRSNMLPS 406
W+IE R KRP LPS
Sbjct: 356 WEIEPLTTFPMYPSPFPLRLKRPWPPGLPS 385
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 961 (343.3 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 177/354 (50%), Positives = 251/354 (70%)
Query: 27 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVA 86
N+ SG+ + + +Y +LW CAGPL +P+ GE VYYFPQG+IE V+AST +
Sbjct: 8 NAQPKLSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREEL 65
Query: 87 DQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF 146
++ P+ DLPSK+ CRVI + LK E ++DE++A++TL+P++ Q + E R
Sbjct: 66 NELQPICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSENRF----RP 121
Query: 147 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHI 206
V+SF K LTASDTS +GGFSV ++HA ECLPPLDMS+ P QE+ A DLH N+WRFRH
Sbjct: 122 LVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHN 181
Query: 207 FRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISS 266
+RG P+RH L +GW+ F++SK+LV GD +F+RGE GELRVG+RRA QQGN+PSS++S
Sbjct: 182 YRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSI 241
Query: 267 HSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFE 326
M GV+A+A HA +F V YKPR+S +FIV YD++++++ N +++G RF MRFE
Sbjct: 242 DCMRHGVIASAKHAFDNQCIFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFE 299
Query: 327 GEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE 380
G++ E+R+ GTI+G+ D P W+ S+WR L+V+WDE ++ RP +VS W+IE
Sbjct: 300 GDDFSERRYFGTIIGVSDFSPH-WKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 352
Score = 50 (22.7 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 642 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXX---XXXXXXXLADDNQV 693
L S V P P +++ N M + N+ + FR F + D
Sbjct: 424 LMSYPVQPMPKLNYNNQMVTQIEENITTKAGTNFRLFGVTLDTPPMIKDPIKQIGSDISK 483
Query: 694 FNEHEKPSQPSQTHTK--DVRSKTQCGSTRSCTKVPL 728
E +K Q SQT +++SK Q S+R+CTKV +
Sbjct: 484 LTERKKFGQ-SQTLRSPIEIQSK-QFSSSRTCTKVQM 518
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 195/382 (51%), Positives = 258/382 (67%)
Query: 31 TTSGVKRVG-DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQ 89
+TSG+ + G + E L +ELWHACAGPLV++P G RV YFPQGH EQV A+TN+ D
Sbjct: 4 STSGLGQQGHEGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGH 63
Query: 90 MPVY-DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHV 148
+P Y LP +++C++ NV + A+ +TDEV+AQ+TL P + +++ +
Sbjct: 64 IPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPS 123
Query: 149 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFR 208
+ FCKTLTASDTSTHGGFSV RR A++ PPLD + QPP QEL A+DLH EW+FRHIFR
Sbjct: 124 NYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFR 183
Query: 209 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHS 268
GQP+RHLL +GWSVFVS+KRLVAGD+ IF+R E +L +G+R A R Q VPSSV+SS S
Sbjct: 184 GQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDS 243
Query: 269 MHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESI-KNNYSIGMRFKMRFEG 327
MH+G+LA A HA +T + FTV++ PR S SEF++ +Y++++ S+GMRF+M FE
Sbjct: 244 MHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFET 303
Query: 328 EEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXX 387
EE+ +R+ GTI GI D D RW +S WR +KV WDE++ R RVSLW+IE
Sbjct: 304 EESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPM 363
Query: 388 XXXXXXXRPKRPRSNMLPSSPD 409
R KRP S PD
Sbjct: 364 YPSLFPLRLKRPWHAGTSSLPD 385
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 942 (336.7 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 181/384 (47%), Positives = 253/384 (65%)
Query: 17 ETGRIPMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIE 76
ETG + N+ SG+ + + +Y +LW CAGPL +P+ GE VYYFPQG+IE
Sbjct: 2 ETGNVV----NAQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIE 55
Query: 77 QVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEK 136
V+AST + ++ P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q +
Sbjct: 56 LVDASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQS 115
Query: 137 EXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDL 196
E R V+SF K LTASDTS +GGF V ++HA ECLPPL + P QEL AKDL
Sbjct: 116 ENQF----RPLVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDL 167
Query: 197 HGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ 256
HGN+WRFRH +RG P+RH L +GW+ F +SK+LV GD +F+RGE GELRVG+RRA QQ
Sbjct: 168 HGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQ 227
Query: 257 GNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYS 316
GN+PSS++S M GV+A+A HA+ +F V YKP S+FIV YD++++++ N +
Sbjct: 228 GNIPSSIVSIDCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFI 287
Query: 317 IGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSL 376
+G RF MRFEG++ E+R+ GTI+G+ D P W+ S+WR L+V+WDE ++ RP +VS
Sbjct: 288 VGSRFTMRFEGDDFSERRYFGTIIGVNDFSPH-WKCSEWRSLEVQWDEFASFSRPNKVSP 346
Query: 377 WKIEXXXXXXXXXXXXXXRPKRPR 400
W+IE + KR R
Sbjct: 347 WEIEHLMSALNVPRSSLLKNKRLR 370
Score = 58 (25.5 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 642 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD---DNQV 693
L S V P P +++ N M + N+ + FR F + + D
Sbjct: 408 LMSYPVQPMPKLNYNNQMVTQIEENITTKAVTNFRLFGVSLAIPLVIKDPIEEIGSDISK 467
Query: 694 FNEHEKPSQPSQTHTK--DVRSKTQCGSTRSCTKVPL 728
E +K Q SQT +++SK Q GSTR+CTKV +
Sbjct: 468 LTEGKKFGQ-SQTLRSPIEIQSK-QFGSTRTCTKVQM 502
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 192/375 (51%), Positives = 249/375 (66%)
Query: 47 TELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVIN 105
++LWHACAGPLV++P G V YFPQGH EQV AS + D +P Y +LPSK++C + +
Sbjct: 22 SQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDF-IPNYPNLPSKLICLLHS 80
Query: 106 VQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGG 165
V L A+ +TDEV+AQ+TL P + D A+ R FCKTLTASDTSTHGG
Sbjct: 81 VTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTHGG 140
Query: 166 FSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVS 225
FSV RR A++ PPLD S QPP QE+ AKDLH W FRHI+RGQP+RHLL +GWSVFVS
Sbjct: 141 FSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 200
Query: 226 SKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGT 285
+KRL AGD+ +F+R E +L +G+RRA RQ + SSVISS SMH+G+LA A HA + +
Sbjct: 201 TKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSS 260
Query: 286 MFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDA 345
FT+++ PR SPSEF+VP +Y +++ S+GMRF+M FE E+ +R+ GT+ GI D
Sbjct: 261 PFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDL 320
Query: 346 DPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLP 405
DP RW+ S+WR L+V WDE++ RP RVS+W+IE RPK PR P
Sbjct: 321 DPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQ---P 377
Query: 406 SSPDSSVLTREGSSK 420
PD L E + K
Sbjct: 378 GMPDDE-LDMENAFK 391
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 184/344 (53%), Positives = 240/344 (69%)
Query: 39 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPS 97
G + + +ELWHACAGPLV +P+ G VYYF QGH EQV ST + A Q+P Y +LPS
Sbjct: 45 GTRKPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPS 104
Query: 98 KILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTA 157
+++C+V NV L A+ D+DE++AQ++L P ++ + + + FCKTLTA
Sbjct: 105 QLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTA 164
Query: 158 SDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQ 217
SDTSTHGGFSV RR A++ PPLD S QPPTQEL +DLH N W FRHI+RGQP+RHLL
Sbjct: 165 SDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLT 224
Query: 218 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 277
+GWS+FV SKRL AGD+ +F+R E +L VGVRRA RQQ +PSSV+S+ SMH+GVLA A
Sbjct: 225 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 284
Query: 278 WHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESI-KNNYSIGMRFKMRFEGEEAPEQRFT 336
HA + T F ++Y PR P+EF++P +Y ++I + S+GMRF M FE E++ ++R+
Sbjct: 285 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 344
Query: 337 GTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE 380
GTIVGI D DP RW SKWR L+V WDE +P RVS W IE
Sbjct: 345 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 388
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 694 (249.4 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 130/252 (51%), Positives = 174/252 (69%)
Query: 45 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 104
+Y +LW+ CAGPL +P+ GE+VYYFPQGHIE +E ST D P++DLPSK+ CRV+
Sbjct: 22 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 81
Query: 105 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 164
+ K + +TDEV+AQ++L+P++ + V R V+ F K LTASD S G
Sbjct: 82 AIDRKVDKNTDEVYAQISLMPDTTE----VMTHNTTMDTRRPIVYFFSKILTASDVSLSG 137
Query: 165 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSV 222
G + +++A EC PPLDMS+ TQ L AKDL+G EW F+H+FRG P+RH+ SG WSV
Sbjct: 138 GLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSV 197
Query: 223 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 282
F ++KRL+ GD F+ LRGENGELR G+RRA QQG++PSSVIS++ M GV+A+ +A
Sbjct: 198 FATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFK 257
Query: 283 TGTMFTVYYKPR 294
T MF V YKPR
Sbjct: 258 TKCMFNVVYKPR 269
Score = 180 (68.4 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 315 YSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERV 374
+++ + +M+FEG++ E+R+ GTI+G+ D P W+DS+WR LKV+WDE S RP +V
Sbjct: 262 FNVVYKPRMQFEGKDFSEKRYDGTIIGVNDMSPH-WKDSEWRSLKVQWDELSPFLRPNQV 320
Query: 375 SLWKIE 380
S W IE
Sbjct: 321 SPWDIE 326
Score = 40 (19.1 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 582 DYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIP 641
D L+G + HS L+ +P N+ NS + + P+ +D + C LFG+
Sbjct: 386 DSKFLSGLLLNHS----LLA-IPNENY-NS--DQMIQPRK---EDITTEATTSCLLFGVD 434
Query: 642 LFSNHV 647
L H+
Sbjct: 435 LTKVHM 440
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 491 (177.9 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 104/229 (45%), Positives = 144/229 (62%)
Query: 39 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSK 98
G E L +LWHACAG +V +P +V+YFPQGH E + + V +P+ P
Sbjct: 10 GGTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAEN---AYDCVDFGNLPI---PPM 63
Query: 99 ILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXR-FHVHS-----FC 152
+LCRV+ ++ A+ ++DEVFA++ L+P +D+ V+ E F +S F
Sbjct: 64 VLCRVLAIKYMADAESDEVFAKLRLIPL--KDDEYVDHEYGDGEDSNGFESNSEKTPSFA 121
Query: 153 KTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPR 212
KTLT SD + GGFSV R A+ P LD + +PP Q + AKD+HG+ W+FRHI+RG PR
Sbjct: 122 KTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPR 181
Query: 213 RHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ-GNVP 260
RHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA R GN P
Sbjct: 182 RHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGP 230
Score = 196 (74.1 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 48/138 (34%), Positives = 67/138 (48%)
Query: 273 VLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPE 332
V+ A A+S G F V Y PR S SEF V +++ + GMRFKM FE E++
Sbjct: 276 VIEAATLAIS-GRPFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSR 334
Query: 333 -QRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXX 391
F GT+ + +DP RW +S WR L+V WDE + +RV+ W +E
Sbjct: 335 ISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLT 394
Query: 392 XXXRPKRPRSNMLPSSPD 409
P++ LP PD
Sbjct: 395 SFSPPRKKMR--LPQHPD 410
Score = 50 (22.7 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 517 PFADAVPVRKSV-LDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNV 575
P P RK + L Q +N + + PS PS + S+ V +V ++G
Sbjct: 392 PLTSFSPPRKKMRLPQHPDYNNLINSIPV-PSFPSNPLIRSSPLSSVLD-NVPVGLQG-A 448
Query: 576 RYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 611
R+ Y L+ + + H + N PP PPS+ + S
Sbjct: 449 RHNAH-QYYGLSSSDLHHYYLNRPPPPPPPSSLQLS 483
Score = 38 (18.4 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 396 PKRPRSNMLPSSPDSSVL 413
P P + ++ SSP SSVL
Sbjct: 421 PSFPSNPLIRSSPLSSVL 438
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 497 (180.0 bits), Expect = 9.0e-67, Sum P(2) = 9.0e-67
Identities = 106/223 (47%), Positives = 137/223 (61%)
Query: 40 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKI 99
+ E +L +LWHACAG +V +P V+YF QGH E A D P +P I
Sbjct: 2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DFHAP--RVPPLI 55
Query: 100 LCRVINVQLKAEPDTDEVFAQVTLLPESNQD---EN-AV----EKEXXXXXXXRFHVHSF 151
LCRV++V+ A+ +TDEVFA++TLLP D EN AV + SF
Sbjct: 56 LCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASF 115
Query: 152 CKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQP 211
KTLT SD + GGFSV R A+ P LD S +PP Q + AKD+HG W+FRHI+RG P
Sbjct: 116 AKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTP 175
Query: 212 RRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 254
RRHLL +GWS FV+ K+L+AGD+ +FLR E+G+L VG+RRA R
Sbjct: 176 RRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR 218
Score = 218 (81.8 bits), Expect = 9.0e-67, Sum P(2) = 9.0e-67
Identities = 48/145 (33%), Positives = 72/145 (49%)
Query: 237 FLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS 296
FLR + M++ GN + ++ + + +A A + G F V Y PR S
Sbjct: 237 FLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRAS 296
Query: 297 PSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPE-QRFTGTIVGIEDADPQRWRDSKW 355
EF V +++ + GMRFKM FE E++ F GT+ ++ ADP RW +S W
Sbjct: 297 TPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPW 356
Query: 356 RCLKVRWDETSTIPRPERVSLWKIE 380
R L+V WDE + +RVS W +E
Sbjct: 357 RLLQVAWDEPDLLQNVKRVSPWLVE 381
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 115/224 (51%), Positives = 148/224 (66%)
Query: 27 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVA 86
N S SG+ + + +Y +LW CAGPL +P+ GE+VYYFPQGHIE VEAST +
Sbjct: 8 NVQSELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREEL 65
Query: 87 DQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRF 146
++ P DLPSK+ CRVI + LK E ++DE + ++TL+P++ Q E E R
Sbjct: 66 NELQPNCDLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTENENQF----RP 121
Query: 147 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHI 206
V+SF K LTASDTS G FSV +HA ECLPPLDMS+ P QEL A DLHGN+WRF+H
Sbjct: 122 IVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHS 181
Query: 207 FRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVR 250
+R PR +GW+ F +SK+LV GD +F RGE GELRVG+R
Sbjct: 182 YR-VPRGDT--TGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 406 (148.0 bits), Expect = 2.6e-46, Sum P(2) = 2.6e-46
Identities = 89/207 (42%), Positives = 115/207 (55%)
Query: 49 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQL 108
+W ACAG V +P RVYYFPQGH+E + + PV P C + ++QL
Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPV---P----CIITSIQL 72
Query: 109 KAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFH----VHSFCKTLTASDTSTHG 164
A+P TDEVFA + L P + Q V +F K LT SD + G
Sbjct: 73 LADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGG 132
Query: 165 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 224
GFSV R AD P L+ PP Q+L D+HG W FRHI+RG PRRHLL +GWS FV
Sbjct: 133 GFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFV 192
Query: 225 SSKRLVAGDAFIFLRGENGELRVGVRR 251
+SK+L+AGD+ +F+R E+ +GVRR
Sbjct: 193 NSKKLIAGDSVVFMRKSADEMFIGVRR 219
Score = 137 (53.3 bits), Expect = 2.6e-46, Sum P(2) = 2.6e-46
Identities = 46/169 (27%), Positives = 70/169 (41%)
Query: 277 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFT 336
A + S G F V + P SEF+V + S+ ++ G R KM E E++ +
Sbjct: 274 AINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWF 333
Query: 337 GTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXX--XX 394
IV + WR S W+ L++ WDE + +RV+ W++E
Sbjct: 334 QGIVSSTYQETGPWRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAK 393
Query: 395 RPKRPR-SNMLPSSPDSSVL-TREG-SSKLNVDPS-SATGFSRVLQGQE 439
R K P+ S D +L + G SS DPS S +S G +
Sbjct: 394 RLKYPQPGGGFLSGDDGEILYPQSGLSSAAAPDPSPSMFSYSTFPAGMQ 442
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 145 (56.1 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 39/131 (29%), Positives = 63/131 (48%)
Query: 117 VFAQVTLLPESNQDENA--VEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHAD 174
+ ++L + +++E E+E R H+ F K +T SD + ++HA+
Sbjct: 1 MMTDLSLTRDEDEEEAKPLAEEEGAREVADREHM--FDKVVTPSDVGKLNRLVIPKQHAE 58
Query: 175 ECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 234
P LD S L +DL G WRFR+ + + +++ GWS FV K+L AGD
Sbjct: 59 RFFP-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDI 117
Query: 235 FIFLR--GENG 243
F R G++G
Sbjct: 118 VSFQRCVGDSG 128
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/96 (34%), Positives = 47/96 (48%)
Query: 149 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFR 208
H F K +T SD + ++HA+ P LD S L +D +G WRFR+ +
Sbjct: 54 HMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRYSYW 112
Query: 209 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGE 244
+ +++ GWS FV K+L AGD F RG E
Sbjct: 113 NSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDE 148
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/115 (31%), Positives = 53/115 (46%)
Query: 128 NQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 187
NQ++ EK H F K +T SD + ++HA+ P LD S
Sbjct: 2 NQEDK--EKPIEEASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTND 58
Query: 188 TQE---LAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 239
+ + L +D GN WRFR+ + + +++ GWS FV K+L AGD F R
Sbjct: 59 SNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR 113
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 138 (53.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 33/92 (35%), Positives = 46/92 (50%)
Query: 149 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFR 208
H F K LT SD + ++HA+ P D Q T L +D +G WRFR+ +
Sbjct: 34 HMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED--NQNGTV-LDFQDKNGKMWRFRYSYW 90
Query: 209 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG 240
+ +++ GWS FV K+L AGD F RG
Sbjct: 91 NSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRG 122
Score = 40 (19.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 569 YQVRGNVR-YGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMV 624
YQ + R Y G+G ++NGN V + G+ PL + N S L+ S V
Sbjct: 189 YQNQFQEREYLGYGYGRVVNGNGVRYYAGS----PLDQHHQWNLGRSEPLVYDSVPV 241
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 134 (52.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 51/195 (26%), Positives = 82/195 (42%)
Query: 122 TLLPESNQDENAVEKEXXXXXXXRFH---VHS-FCKTLTASDTSTHGGFSVLRRHADECL 177
TLL + Q + + H S F K+LT SD + ++HA++
Sbjct: 13 TLLWQQQQHRHTTDTSETTTTATWLHDDLKESLFEKSLTPSDVGKLNRLVIPKQHAEKYF 72
Query: 178 P---------PLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKR 228
P D S L+ +D G WRFR+ + + ++L GWS FV K+
Sbjct: 73 PLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQ 132
Query: 229 LVAGDAFIFLR--GENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL-ATAWHAVSTGT 285
L GD F R ++ L +G RR R QG+ S ++ +++ + A ++H +
Sbjct: 133 LDPGDVVFFQRHRSDSRRLFIGWRR--RGQGSSSSVAATNSAVNTSSMGALSYHQIHA-- 188
Query: 286 MFTVYYKPRTSPSEF 300
T Y S SE+
Sbjct: 189 --TSNYSNPPSHSEY 201
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 126 (49.4 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 151 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQE---LAAKDLHGNEWRFRHIF 207
F K LT SD + ++HA+ P L + ++ L +D G WRFR+ +
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFP-LAAAAADAVEKGLLLCFEDEEGKPWRFRYSY 96
Query: 208 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR--GENGELRVGVRR 251
+ ++L GWS +V K L AGD +F R + G +G RR
Sbjct: 97 WNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
Score = 39 (18.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 622 AMVQDQEAGKSKDCKLFGI 640
A + + G SK +LFG+
Sbjct: 170 AQAVESQRGNSKTLRLFGV 188
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 126 (49.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 151 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQ 210
F K +T SD + + HA++ P + L +D++G WRFR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 247
Query: 211 PRRHLLQSGWSVFVSSKRLVAGDAFIFLR--GENGELRVG 248
+ ++L GWS FV K L AGD F R G++ +L +G
Sbjct: 248 SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 151 FCKTLTASDTSTHGGFSVLRRHADECLP-PLDMSR-QPPTQELAAKDLHGNEWRFRHIFR 208
F KT+T SD + + A++ P PL + L +D++G WRFR+ +
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 209 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGEN 242
+ ++L GWS FV KRL AGD F R +
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSND 276
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 34/111 (30%), Positives = 53/111 (47%)
Query: 151 FCKTLTASDTSTHGGFSVLRRHADECLP-PL---DMSRQP-PTQELAA--KDLHGNEWRF 203
F KT+T SD + ++HA++ P P M P PT+ + +D G WRF
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 204 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 254
R+ + + ++L GWS FV K L AGD F R + ++ + +R
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVR 305
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 114 (45.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 41/146 (28%), Positives = 66/146 (45%)
Query: 151 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQP------PTQE----LAAKDLHGNE 200
F K+LT SD + ++HA++ P + + T E L+ +D G
Sbjct: 29 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKC 88
Query: 201 WRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG--ENGELRVGVRRAMRQQGN 258
W+FR+ + + ++L GWS +V K L AGD F R + L +G RR +
Sbjct: 89 WKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASSS 148
Query: 259 VPSSVISSHSMHLGVLATA-WHAVST 283
SV+S ++ V TA W ++T
Sbjct: 149 PAVSVVSQEAL---VNTTAYWSGLTT 171
Score = 43 (20.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 605 PSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPL--FSNHVMPEP 651
P+ + +H ++ + + AG S+ +LFG+ L + V P P
Sbjct: 183 PNIHQEYSHYGAVVDHAQSIPPVVAGSSRTVRLFGVNLECHGDAVEPPP 231
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 730 690 0.00080 121 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 630 (67 KB)
Total size of DFA: 398 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.73u 0.18s 59.91t Elapsed: 00:00:03
Total cpu time: 59.74u 0.18s 59.92t Elapsed: 00:00:03
Start: Tue May 21 15:29:47 2013 End: Tue May 21 15:29:50 2013