Query 004792
Match_columns 730
No_of_seqs 292 out of 596
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 6.2E-29 2.1E-33 230.7 13.6 113 144-256 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 2.9E-17 9.8E-22 155.6 10.8 96 148-253 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 3.8E-14 1.3E-18 126.1 9.5 93 149-252 9-101 (104)
4 1na6_A Ecorii, restriction end 95.0 0.033 1.1E-06 60.7 7.0 93 147-240 17-123 (404)
5 3cgm_A SLYD, peptidyl-prolyl C 56.5 41 0.0014 31.9 8.6 100 229-344 3-110 (158)
6 2k8i_A SLYD, peptidyl-prolyl C 46.7 78 0.0027 30.4 8.9 102 229-344 3-114 (171)
7 2kfw_A FKBP-type peptidyl-prol 44.7 30 0.001 34.1 5.8 102 229-344 3-114 (196)
8 4dt4_A FKBP-type 16 kDa peptid 43.0 76 0.0026 30.5 8.2 105 228-344 24-138 (169)
9 2kr7_A FKBP-type peptidyl-prol 40.4 1.4E+02 0.0047 27.8 9.3 105 226-344 4-119 (151)
10 3p8d_A Medulloblastoma antigen 36.6 55 0.0019 27.5 5.3 54 311-382 3-56 (67)
11 3o27_A Putative uncharacterize 34.1 29 0.00098 29.5 3.2 34 221-254 31-65 (68)
12 2jng_A Cullin-7, CUL-7; P53 bi 33.4 42 0.0014 30.6 4.4 72 303-387 10-81 (105)
13 3pr9_A FKBP-type peptidyl-prol 29.9 2.7E+02 0.0092 26.3 9.6 62 273-344 56-123 (157)
14 3qii_A PHD finger protein 20; 27.9 84 0.0029 27.7 5.2 54 312-383 19-72 (85)
15 1mhn_A SurviVal motor neuron p 27.7 63 0.0022 25.6 4.1 29 313-344 2-30 (59)
16 2e63_A KIAA1787 protein; struc 25.9 39 0.0013 32.7 3.0 24 227-250 116-139 (170)
17 4a4f_A SurviVal of motor neuro 25.9 64 0.0022 26.1 3.9 44 311-366 5-48 (64)
18 3s6w_A Tudor domain-containing 25.0 65 0.0022 24.9 3.6 28 314-344 1-28 (54)
19 3pie_A 5'->3' exoribonuclease 23.2 1.1E+02 0.0039 37.7 6.9 48 312-367 1063-1110(1155)
20 3e0e_A Replication protein A; 21.7 2.3E+02 0.008 24.3 6.9 62 147-240 13-74 (97)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=6.2e-29 Score=230.66 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=103.7
Q ss_pred CCCceeEEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhh
Q 004792 144 PRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 223 (730)
Q Consensus 144 ~~~~~~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLD~~~~~p~q~L~~kDl~G~~W~FR~iyRg~prrhlLTtGWs~F 223 (730)
.++...+|+|+||+|||+++++|+||+++|+.|||.++..+..++++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 45567899999999999999999999999999999999766667899999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEcCC--CcEEEEEEeecccC
Q 004792 224 VSSKRLVAGDAFIFLRGEN--GELRVGVRRAMRQQ 256 (730)
Q Consensus 224 Vr~K~L~aGD~VVF~R~en--GeL~VGIRRa~r~~ 256 (730)
|++|+|++||+|+|++.++ +.|+|+|||+.+..
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999864 57999999988654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.71 E-value=2.9e-17 Score=155.64 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=85.8
Q ss_pred eeEEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhcccc
Q 004792 148 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSK 227 (730)
Q Consensus 148 ~~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLD~~~~~p~q~L~~kDl~G~~W~FR~iyRg~prrhlLTtGWs~FVr~K 227 (730)
..+|.|+||+||+.++..|.||+.+++.|||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 3599999999999887789999999999999764 56888887 6999999999984 699999999999999
Q ss_pred CCCCCCEEEEEEcCCC--cEEEEEEeec
Q 004792 228 RLVAGDAFIFLRGENG--ELRVGVRRAM 253 (730)
Q Consensus 228 ~L~aGD~VVF~R~enG--eL~VGIRRa~ 253 (730)
+|++||+|+|...++. .+.|.|.|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5899999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.51 E-value=3.8e-14 Score=126.09 Aligned_cols=93 Identities=19% Similarity=0.363 Sum_probs=81.4
Q ss_pred eEEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhccccC
Q 004792 149 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKR 228 (730)
Q Consensus 149 ~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLD~~~~~p~q~L~~kDl~G~~W~FR~iyRg~prrhlLTtGWs~FVr~K~ 228 (730)
..|.|+|+++|. ..+|.||+++++.+.+.+ ...+.++|..|+.|++++.+++ +++.|+.||..||++++
T Consensus 9 p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 9 VQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp EEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 489999999994 458999999998865544 2478899999999999999875 56899999999999999
Q ss_pred CCCCCEEEEEEcCCCcEEEEEEee
Q 004792 229 LVAGDAFIFLRGENGELRVGVRRA 252 (730)
Q Consensus 229 L~aGD~VVF~R~enGeL~VGIRRa 252 (730)
|++||.|+|...++..+.|-|-+.
T Consensus 78 L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 78 LEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp CCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCEEEEEEcCCCeEEEEEECC
Confidence 999999999999999999999764
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.02 E-value=0.033 Score=60.71 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=68.0
Q ss_pred ceeEEEEecccccCCCC----CceEEcccchhccCCCCC-CCCCCCccEEEEE--eCCCCeEEEEEEEeC------CCCc
Q 004792 147 HVHSFCKTLTASDTSTH----GGFSVLRRHADECLPPLD-MSRQPPTQELAAK--DLHGNEWRFRHIFRG------QPRR 213 (730)
Q Consensus 147 ~~~~F~K~LT~SDV~~~----GrfsVPk~~Ae~~FPpLD-~~~~~p~q~L~~k--Dl~G~~W~FR~iyRg------~prr 213 (730)
..+.|+|.|++.|++.. .+|.+|+..+..+||.|+ .....+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 35789999999999976 489999988999999998 3344566666543 443445599999997 3446
Q ss_pred eeeccCch-hhccccCCCCCCEEEEEEc
Q 004792 214 HLLQSGWS-VFVSSKRLVAGDAFIFLRG 240 (730)
Q Consensus 214 hlLTtGWs-~FVr~K~L~aGD~VVF~R~ 240 (730)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88873 32 3444577889999998754
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=56.45 E-value=41 Score=31.85 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCCCCEEEE-EEc-CCCcEEEEEEeecccCCCCCCCccCCCCcchhhHHHHHHHHHcCCeEEEEEecCC------CCCce
Q 004792 229 LVAGDAFIF-LRG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRT------SPSEF 300 (730)
Q Consensus 229 L~aGD~VVF-~R~-enGeL~VGIRRa~r~~~~~p~sv~ss~sm~~gvla~A~~aa~tg~~F~V~Y~PRa------s~sEF 300 (730)
.+.||.|.+ |.. .+|+.+-.-+ .. . .+....+-. -+.+|......|..++|.--|-. ...-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~~-f-------~~G~g~vip-G~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-LS-Y-------LHGHRNLIP-GLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-EE-E-------ETTSSSSCH-HHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-EE-E-------EECCCCcCh-HHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 568898876 332 5777654433 11 1 111112222 34566666778888888876542 23457
Q ss_pred eEehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 301 IVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 301 VVp~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
.|+++.|... ..|.+||+|.+.- ++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~~--~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQD--MEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEEE--TTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEEC--CCC--CEEEEEEEEECC
Confidence 8999888643 5799999998653 331 567899999975
No 6
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=46.70 E-value=78 Score=30.35 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=62.2
Q ss_pred CCCCCEEEE-EEc--CCCcEEEEEEeecccCCCCCCCc-cCCCCcchhhHHHHHHHHHcCCeEEEEEecCCC------CC
Q 004792 229 LVAGDAFIF-LRG--ENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS------PS 298 (730)
Q Consensus 229 L~aGD~VVF-~R~--enGeL~VGIRRa~r~~~~~p~sv-~ss~sm~~gvla~A~~aa~tg~~F~V~Y~PRas------~s 298 (730)
.+.||.|.+ |.. .+|+.+-.-+.. .|... +....+-. -+.+|......|..++|..-|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vip-G~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCS-HHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568999877 333 578765543310 12222 12222222 345666667788888887766432 23
Q ss_pred ceeEehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 299 EFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 299 EFVVp~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
-+.||++.|.. ...+.+||+|.+. +++- . +.|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 46899998864 2478999999854 4442 2 6889998865
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=44.71 E-value=30 Score=34.06 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=61.4
Q ss_pred CCCCCEEEE-EE--cCCCcEEEEEEeecccCCCCCCCcc-CCCCcchhhHHHHHHHHHcCCeEEEEEecC------CCCC
Q 004792 229 LVAGDAFIF-LR--GENGELRVGVRRAMRQQGNVPSSVI-SSHSMHLGVLATAWHAVSTGTMFTVYYKPR------TSPS 298 (730)
Q Consensus 229 L~aGD~VVF-~R--~enGeL~VGIRRa~r~~~~~p~sv~-ss~sm~~gvla~A~~aa~tg~~F~V~Y~PR------as~s 298 (730)
.+.||.|.+ |. ..+|+++-.-+. ..|...+ ....+- --|.+|..-...|..++|..-|- ....
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vi-pG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLI-SGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSC-HHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcc-hHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999877 33 257776544321 1232222 222222 23456666667888888876654 2334
Q ss_pred ceeEehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 299 EFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 299 EFVVp~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
-+.||++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57889988853 246899999974 44442 57888888864
No 8
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=42.99 E-value=76 Score=30.53 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=65.4
Q ss_pred CCCCCCEEEE-EEc--CCCcEEEEEEeecccCCCCCCCcc-CCCCcchhhHHHHHHHHHcCCeEEEEEecCCCCC-----
Q 004792 228 RLVAGDAFIF-LRG--ENGELRVGVRRAMRQQGNVPSSVI-SSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPS----- 298 (730)
Q Consensus 228 ~L~aGD~VVF-~R~--enGeL~VGIRRa~r~~~~~p~sv~-ss~sm~~gvla~A~~aa~tg~~F~V~Y~PRas~s----- 298 (730)
..+.||.|.+ |.. .+|+++-.-+.. +.|...+ ....+ +--+.+|......|..++|..-|-..-.
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5789999987 443 678865443211 1122221 11222 2235667777788888999877654333
Q ss_pred -ceeEehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 299 -EFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 299 -EFVVp~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
=+.||++.|... ..+.+||+|.+. +++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA--GEPEIGAIMLFT--AMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT--CCCCTTCEEEEE--CTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc--CCCCCCcEEEEE--CCCC--CEEEEEEEEEcC
Confidence 267888888643 457899999764 4332 467899999975
No 9
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=40.41 E-value=1.4e+02 Score=27.84 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=64.3
Q ss_pred ccCCCCCCEEEE-EEc--C-CCcEEEEEEeecccCCCCCCCcc-CCCCcchhhHHHHHHHHHcCCeEEEEEecC------
Q 004792 226 SKRLVAGDAFIF-LRG--E-NGELRVGVRRAMRQQGNVPSSVI-SSHSMHLGVLATAWHAVSTGTMFTVYYKPR------ 294 (730)
Q Consensus 226 ~K~L~aGD~VVF-~R~--e-nGeL~VGIRRa~r~~~~~p~sv~-ss~sm~~gvla~A~~aa~tg~~F~V~Y~PR------ 294 (730)
.+..+.||.|.+ |.. . +|+.+-.-+. ..|.... ....+- --+.+|......|..++|.--|-
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vi-pg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQII-AGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSC-HHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCcc-HHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 355778999977 333 4 7776544321 1222222 122222 23456666667888888876554
Q ss_pred CCCCceeEehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 295 TSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 295 as~sEFVVp~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
..-.-+.||+..| . ...+.+||+|.+.-+ +- ..+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~~~--~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQTE--DN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEEET--TT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEECC--CC--CEEEEEEEEECC
Confidence 2234578899988 2 357899999986443 32 467999999975
No 10
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=36.62 E-value=55 Score=27.54 Aligned_cols=54 Identities=6% Similarity=0.204 Sum_probs=39.4
Q ss_pred hccCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeeeeecCCCCCCCCCCcccCceeec
Q 004792 311 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPA 382 (730)
Q Consensus 311 l~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d~DP~rWP~S~WR~L~VrWDe~~~~~~~~RVSPWeIEpv 382 (730)
|-..|.+|+++--++ + | .++|-++|++|... ....|..++.. .+.|..=+|-|+
T Consensus 3 ~~~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~ 56 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAF 56 (67)
T ss_dssp --CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEEC
T ss_pred cCcccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccC
Confidence 456899999999999 3 3 37999999999852 45899999933 455665555554
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=34.08 E-value=29 Score=29.48 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=29.7
Q ss_pred hhhccccCCCCCCEEEEEEc-CCCcEEEEEEeecc
Q 004792 221 SVFVSSKRLVAGDAFIFLRG-ENGELRVGVRRAMR 254 (730)
Q Consensus 221 s~FVr~K~L~aGD~VVF~R~-enGeL~VGIRRa~r 254 (730)
.++++.-+|+.||.+...-+ .+|++.+..+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999999886 58889999999654
No 12
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=33.43 E-value=42 Score=30.62 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=49.1
Q ss_pred ehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeeeeecCCCCCCCCCCcccCceeec
Q 004792 303 PYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPA 382 (730)
Q Consensus 303 p~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d~DP~rWP~S~WR~L~VrWDe~~~~~~~~RVSPWeIEpv 382 (730)
..+.|-.-+..+..+|||+||.=+-|+-+. -=.|++. ++ .+- -| ..||.|.... +.-.|.-=.||++
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~G--l~-----~vQv~W~~~G---~TyWV~~~~~Ell 76 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NNG--VP-----PVQVFWESTG---RTYWVHWHMLEIL 76 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CTT--SS-----EEEEEETTTT---EEEEEEGGGEEEC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ec-CCC--Cc-----cceeeehhcC---ceEEEEeehhhhc
Confidence 467888889999999999999655444332 2367777 32 222 23 8999999776 3456666678887
Q ss_pred CCCCC
Q 004792 383 LAPPA 387 (730)
Q Consensus 383 ~~~~~ 387 (730)
+.+..
T Consensus 77 g~~~~ 81 (105)
T 2jng_A 77 GFEED 81 (105)
T ss_dssp CCCC-
T ss_pred CCccc
Confidence 76553
No 13
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=29.91 E-value=2.7e+02 Score=26.25 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcCCeEEEEEecCCCC------CceeEehhHHHHhhccCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 273 VLATAWHAVSTGTMFTVYYKPRTSP------SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 273 vla~A~~aa~tg~~F~V~Y~PRas~------sEFVVp~~ky~~Al~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
-+.+|......|..++|+--|-..- .=+.||++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 56 G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 56 GLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 3567887888999999986654322 2367999988753 345678999975 321 589999875
No 14
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=27.91 E-value=84 Score=27.67 Aligned_cols=54 Identities=6% Similarity=0.176 Sum_probs=39.8
Q ss_pred ccCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeeeeecCCCCCCCCCCcccCceeecC
Q 004792 312 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPAL 383 (730)
Q Consensus 312 ~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d~DP~rWP~S~WR~L~VrWDe~~~~~~~~RVSPWeIEpv~ 383 (730)
...|.+|+++--++ + | .++|-++|++|... ..+.|.+++.. .+.|.+=+|.|+.
T Consensus 19 ~~~f~vGd~VlArW-~-D--~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp --CCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CcccccCCEEEEEe-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 46899999999999 4 3 37999999999862 35899999943 4556666666643
No 15
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=27.70 E-value=63 Score=25.57 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=24.0
Q ss_pred cCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 313 NNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 313 ~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
..|.+|+.+..+|..+. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 46999999999995433 799999999964
No 16
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.89 E-value=39 Score=32.67 Aligned_cols=24 Identities=38% Similarity=0.392 Sum_probs=21.2
Q ss_pred cCCCCCCEEEEEEcCCCcEEEEEE
Q 004792 227 KRLVAGDAFIFLRGENGELRVGVR 250 (730)
Q Consensus 227 K~L~aGD~VVF~R~enGeL~VGIR 250 (730)
..|.+||.|-|++..+|+|++.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 456899999999999999999874
No 17
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=25.86 E-value=64 Score=26.08 Aligned_cols=44 Identities=9% Similarity=0.250 Sum_probs=32.2
Q ss_pred hccCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeeeeecCCC
Q 004792 311 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETS 366 (730)
Q Consensus 311 l~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d~DP~rWP~S~WR~L~VrWDe~~ 366 (730)
....|.+|+.+.-+|..+. .||.++|.+|.... ....|...+=.
T Consensus 5 ~~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp CSSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred cCCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 3468999999999995433 79999999997421 24567776653
No 18
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=25.03 E-value=65 Score=24.95 Aligned_cols=28 Identities=4% Similarity=0.109 Sum_probs=22.3
Q ss_pred CcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 004792 314 NYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 344 (730)
Q Consensus 314 ~ws~GmRFKM~fEteDss~~r~~GTI~gv~d 344 (730)
.|.+|+..--+|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995443 799999999864
No 19
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=23.19 E-value=1.1e+02 Score=37.69 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.5
Q ss_pred ccCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeeeeecCCCC
Q 004792 312 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETST 367 (730)
Q Consensus 312 ~~~ws~GmRFKM~fEteDss~~r~~GTI~gv~d~DP~rWP~S~WR~L~VrWDe~~~ 367 (730)
+..|..|+||.|.=+....+- --.|||+||..... =.+|+|-||++=.
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~~-------~~~ldVvFD~~F~ 1110 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIGK-------NVSIQVLFDNEII 1110 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCCC-------ceEEEEEeccCcc
Confidence 456999999999887665553 34899999986422 3689999999843
No 20
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=21.70 E-value=2.3e+02 Score=24.28 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=37.9
Q ss_pred ceeEEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhccc
Q 004792 147 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSS 226 (730)
Q Consensus 147 ~~~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLD~~~~~p~q~L~~kDl~G~~W~FR~iyRg~prrhlLTtGWs~FVr~ 226 (730)
.+....++|+..++.. +.++ |.. ......+.+.|..| ..+.+.|+ ..+..
T Consensus 13 ~v~i~~~V~~~~~~r~-----~~~~---------~G~-~~~v~~~~l~DeTG---~I~~tlW~------------~~~~~ 62 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKE-----FSRK---------DGT-KGQLKSLFLKDDTG---SIRGTLWN------------ELADF 62 (97)
T ss_dssp EEEEEEEEEEECCCEE-----EC-------------C-CEEEEEEEEEETTE---EEEEEEEG------------GGGGC
T ss_pred cEEEEEEEEECCCceE-----EEcC---------CCC-eeEEEEEEEECCCC---cEEEEEEC------------Ccccc
Confidence 4567778887776643 1111 110 01245688899988 56666554 44443
Q ss_pred cCCCCCCEEEEEEc
Q 004792 227 KRLVAGDAFIFLRG 240 (730)
Q Consensus 227 K~L~aGD~VVF~R~ 240 (730)
.|++||.|.| ++
T Consensus 63 -~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 63 -EVKKGDIAEV-SG 74 (97)
T ss_dssp -CCCTTCEEEE-EE
T ss_pred -ccCCCCEEEE-EE
Confidence 7999999999 64
Done!