Query 004793
Match_columns 730
No_of_seqs 266 out of 1812
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.7E-14 5.9E-19 126.0 6.2 78 650-729 12-89 (91)
2 2ep4_A Ring finger protein 24; 99.4 2.4E-13 8.1E-18 113.4 6.1 53 677-729 12-64 (74)
3 2kiz_A E3 ubiquitin-protein li 99.4 3.6E-13 1.2E-17 110.9 6.7 54 676-729 10-63 (69)
4 1x4j_A Ring finger protein 38; 99.4 1.4E-13 4.7E-18 115.4 4.1 53 677-729 20-72 (75)
5 1iym_A EL5; ring-H2 finger, ub 99.4 2.5E-13 8.7E-18 106.8 4.4 51 678-728 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 3.8E-13 1.3E-17 113.2 4.9 54 676-729 11-64 (78)
7 1v87_A Deltex protein 2; ring- 99.3 2.6E-12 8.8E-17 115.5 7.2 50 679-728 24-93 (114)
8 2ecm_A Ring finger and CHY zin 99.3 3E-12 1E-16 100.5 4.7 50 679-728 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.3 3.5E-12 1.2E-16 109.3 5.3 52 677-728 12-75 (81)
10 2ea6_A Ring finger protein 4; 99.2 3.2E-12 1.1E-16 104.2 4.2 53 677-729 12-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.2 2.8E-12 9.7E-17 105.5 3.8 52 678-729 8-63 (71)
12 2d8t_A Dactylidin, ring finger 99.2 4.7E-12 1.6E-16 105.2 3.7 49 677-728 12-60 (71)
13 2djb_A Polycomb group ring fin 99.2 1.4E-11 4.7E-16 102.6 5.8 51 676-729 11-62 (72)
14 2xeu_A Ring finger protein 4; 99.2 8.2E-12 2.8E-16 100.3 3.4 51 679-729 2-56 (64)
15 3dpl_R Ring-box protein 1; ubi 99.2 1.7E-11 5.8E-16 111.2 5.8 51 677-727 34-99 (106)
16 2csy_A Zinc finger protein 183 99.2 1.8E-11 6.3E-16 103.9 5.5 49 677-728 12-60 (81)
17 2ct2_A Tripartite motif protei 99.2 3.5E-11 1.2E-15 102.6 6.4 54 675-728 10-67 (88)
18 1chc_A Equine herpes virus-1 r 99.2 1.7E-11 5.8E-16 100.3 4.2 48 679-728 4-51 (68)
19 2yur_A Retinoblastoma-binding 99.1 2.4E-11 8.2E-16 101.9 4.9 50 676-728 11-63 (74)
20 2ysl_A Tripartite motif-contai 99.1 4.2E-11 1.4E-15 99.1 5.6 50 677-729 17-69 (73)
21 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.9E-16 102.1 1.8 49 677-729 12-60 (70)
22 4ayc_A E3 ubiquitin-protein li 99.1 2.2E-11 7.7E-16 113.8 4.0 45 681-728 54-98 (138)
23 2ecy_A TNF receptor-associated 99.1 5.3E-11 1.8E-15 97.3 5.1 50 677-729 12-62 (66)
24 2d8s_A Cellular modulator of i 99.1 5.5E-11 1.9E-15 102.7 4.8 52 676-728 11-69 (80)
25 1t1h_A Gspef-atpub14, armadill 99.1 6.9E-11 2.3E-15 99.4 5.2 48 678-728 6-54 (78)
26 2ecw_A Tripartite motif-contai 99.1 9.6E-11 3.3E-15 98.8 6.0 49 677-728 16-70 (85)
27 2ysj_A Tripartite motif-contai 99.1 1.5E-10 5.3E-15 93.6 6.0 45 676-723 16-63 (63)
28 2ecv_A Tripartite motif-contai 99.0 1.1E-10 3.8E-15 98.4 4.8 49 677-728 16-70 (85)
29 3lrq_A E3 ubiquitin-protein li 99.0 8.4E-11 2.9E-15 104.3 4.0 46 680-728 22-69 (100)
30 2egp_A Tripartite motif-contai 99.0 4.8E-11 1.6E-15 100.0 2.2 49 677-728 9-64 (79)
31 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 100.5 5.1 49 676-727 9-60 (92)
32 4a0k_B E3 ubiquitin-protein li 99.0 3.3E-11 1.1E-15 111.3 0.6 52 676-727 44-110 (117)
33 2y43_A E3 ubiquitin-protein li 99.0 1.5E-10 5.2E-15 101.8 4.3 46 680-728 22-68 (99)
34 2ckl_A Polycomb group ring fin 99.0 1.7E-10 5.8E-15 103.1 4.4 47 679-728 14-61 (108)
35 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5E-15 105.1 3.8 50 679-728 6-59 (133)
36 3fl2_A E3 ubiquitin-protein li 99.0 2E-10 7E-15 105.0 4.7 47 680-729 52-99 (124)
37 2ecj_A Tripartite motif-contai 99.0 2.4E-10 8.4E-15 90.3 4.5 44 677-723 12-58 (58)
38 2ckl_B Ubiquitin ligase protei 98.9 4E-10 1.4E-14 107.9 4.3 47 679-728 53-101 (165)
39 1z6u_A NP95-like ring finger p 98.9 5.8E-10 2E-14 106.3 4.8 46 681-729 79-125 (150)
40 1g25_A CDK-activating kinase a 98.9 7.3E-10 2.5E-14 90.3 4.6 50 680-729 3-55 (65)
41 1jm7_A BRCA1, breast cancer ty 98.9 4.8E-10 1.7E-14 99.9 3.8 45 681-728 22-69 (112)
42 2kr4_A Ubiquitin conjugation f 98.9 9.9E-10 3.4E-14 95.2 5.3 48 678-728 12-59 (85)
43 3hct_A TNF receptor-associated 98.9 6.2E-10 2.1E-14 101.2 4.2 50 676-728 14-64 (118)
44 3l11_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 102.1 1.7 46 679-727 14-60 (115)
45 2kre_A Ubiquitin conjugation f 98.9 1.7E-09 5.8E-14 96.8 5.2 48 678-728 27-74 (100)
46 4ap4_A E3 ubiquitin ligase RNF 98.9 1.1E-09 3.9E-14 99.1 4.0 53 677-729 69-125 (133)
47 1wgm_A Ubiquitin conjugation f 98.8 2.1E-09 7.2E-14 95.8 5.6 48 678-728 20-68 (98)
48 2ct0_A Non-SMC element 1 homol 98.8 2.7E-09 9.2E-14 91.3 5.2 50 676-727 11-62 (74)
49 2c2l_A CHIP, carboxy terminus 98.8 3E-09 1E-13 107.7 6.1 48 678-728 206-254 (281)
50 1rmd_A RAG1; V(D)J recombinati 98.8 1.8E-09 6.2E-14 97.4 3.9 46 680-728 23-69 (116)
51 2y1n_A E3 ubiquitin-protein li 98.8 3.5E-09 1.2E-13 115.3 4.6 46 680-728 332-378 (389)
52 2vje_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 87.2 3.3 47 679-728 7-56 (64)
53 3knv_A TNF receptor-associated 98.7 1.8E-09 6.3E-14 102.0 1.3 48 677-727 28-76 (141)
54 2vje_B MDM4 protein; proto-onc 98.7 4.9E-09 1.7E-13 86.0 3.0 47 679-728 6-55 (63)
55 1bor_A Transcription factor PM 98.7 2.9E-09 9.7E-14 85.1 1.2 45 678-728 4-48 (56)
56 1e4u_A Transcriptional repress 98.7 1.2E-08 4.2E-13 87.5 5.1 51 677-728 8-61 (78)
57 1jm7_B BARD1, BRCA1-associated 98.7 2.9E-09 1E-13 96.6 1.1 44 680-728 22-66 (117)
58 2yu4_A E3 SUMO-protein ligase 98.6 9.8E-09 3.4E-13 90.3 3.2 45 679-726 6-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.6 1.1E-08 3.6E-13 86.2 2.4 41 681-728 25-66 (74)
60 2f42_A STIP1 homology and U-bo 98.6 2.2E-08 7.7E-13 98.7 4.7 48 678-728 104-152 (179)
61 3hcs_A TNF receptor-associated 98.6 2E-08 6.8E-13 96.4 3.9 50 676-728 14-64 (170)
62 2ecg_A Baculoviral IAP repeat- 98.5 6.4E-08 2.2E-12 81.4 3.0 42 681-729 26-68 (75)
63 2ea5_A Cell growth regulator w 98.4 1.4E-07 4.9E-12 78.6 4.8 47 676-729 11-58 (68)
64 3k1l_B Fancl; UBC, ring, RWD, 98.4 6.1E-08 2.1E-12 103.9 1.5 52 677-728 305-372 (381)
65 1wim_A KIAA0161 protein; ring 98.3 1.7E-07 5.8E-12 81.9 2.9 48 679-726 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.6E-12 76.6 2.9 45 681-728 4-49 (61)
67 2yho_A E3 ubiquitin-protein li 98.3 1.5E-07 5.2E-12 80.6 1.8 41 681-728 19-60 (79)
68 3htk_C E3 SUMO-protein ligase 98.3 2.7E-07 9.2E-12 95.9 3.4 47 679-728 180-231 (267)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.2 6.9E-07 2.3E-11 73.2 3.7 48 678-728 4-58 (60)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 8.8E-12 99.3 1.0 43 679-728 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.7 2.6E-05 9E-10 70.2 4.1 45 682-728 3-48 (101)
72 3nw0_A Non-structural maintena 97.4 9.4E-05 3.2E-09 75.7 4.7 46 679-726 179-226 (238)
73 2ko5_A Ring finger protein Z; 94.0 0.022 7.4E-07 50.9 2.2 44 679-727 27-71 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.7 0.044 1.5E-06 47.8 3.6 34 680-713 3-36 (101)
75 2lri_C Autoimmune regulator; Z 93.2 0.068 2.3E-06 44.5 3.9 49 678-729 10-62 (66)
76 3i2d_A E3 SUMO-protein ligase 89.4 0.24 8.3E-06 53.8 4.3 46 681-728 250-299 (371)
77 1wil_A KIAA1045 protein; ring 87.1 0.52 1.8E-05 41.4 4.0 37 676-713 11-47 (89)
78 4fo9_A E3 SUMO-protein ligase 85.9 0.54 1.8E-05 51.0 4.3 46 681-728 216-265 (360)
79 1we9_A PHD finger family prote 84.2 0.17 5.8E-06 41.1 -0.4 49 678-726 4-58 (64)
80 3m62_A Ubiquitin conjugation f 83.4 0.55 1.9E-05 56.6 3.3 48 678-728 889-937 (968)
81 2l5u_A Chromodomain-helicase-D 83.3 0.68 2.3E-05 37.6 2.8 48 677-727 8-59 (61)
82 1f62_A Transcription factor WS 82.8 0.62 2.1E-05 36.1 2.3 45 682-726 2-50 (51)
83 2k16_A Transcription initiatio 80.1 0.39 1.3E-05 40.2 0.3 50 678-727 16-69 (75)
84 1mm2_A MI2-beta; PHD, zinc fin 79.0 0.4 1.4E-05 39.0 0.0 48 678-728 7-58 (61)
85 1wep_A PHF8; structural genomi 78.8 1.9 6.4E-05 36.6 4.1 47 680-727 12-64 (79)
86 2cs3_A Protein C14ORF4, MY039 77.9 2 7E-05 37.4 4.1 39 678-716 13-52 (93)
87 2lv9_A Histone-lysine N-methyl 74.2 1.3 4.5E-05 39.2 2.0 46 680-726 28-76 (98)
88 1wem_A Death associated transc 74.1 1 3.5E-05 37.8 1.2 48 681-729 17-73 (76)
89 2yql_A PHD finger protein 21A; 73.4 0.32 1.1E-05 38.7 -1.9 46 677-725 6-55 (56)
90 2ysm_A Myeloid/lymphoid or mix 73.0 1 3.5E-05 40.2 1.0 38 678-715 5-42 (111)
91 1wee_A PHD finger family prote 71.0 0.43 1.5E-05 39.9 -1.8 50 679-729 15-69 (72)
92 1fp0_A KAP-1 corepressor; PHD 69.5 1.8 6.1E-05 38.1 1.7 48 676-726 21-72 (88)
93 2kgg_A Histone demethylase jar 69.0 1.5 5.2E-05 34.4 1.1 43 682-724 4-52 (52)
94 1zbd_B Rabphilin-3A; G protein 66.8 0.76 2.6E-05 43.2 -1.3 34 678-711 53-88 (134)
95 3v43_A Histone acetyltransfera 63.5 9.6 0.00033 34.2 5.4 33 679-711 4-42 (112)
96 1wew_A DNA-binding family prot 63.2 2 6.9E-05 36.4 0.8 48 679-727 15-73 (78)
97 1weu_A Inhibitor of growth fam 62.3 3.8 0.00013 36.2 2.4 43 681-727 37-86 (91)
98 3v43_A Histone acetyltransfera 61.1 2.2 7.4E-05 38.4 0.6 46 681-726 62-112 (112)
99 2e6r_A Jumonji/ARID domain-con 60.8 0.85 2.9E-05 40.1 -2.1 49 677-725 13-65 (92)
100 1xwh_A Autoimmune regulator; P 60.2 1.1 3.9E-05 36.7 -1.3 45 678-725 6-54 (66)
101 2puy_A PHD finger protein 21A; 59.1 1.4 4.7E-05 35.5 -0.9 45 679-726 4-52 (60)
102 2vpb_A Hpygo1, pygopus homolog 58.6 7.1 0.00024 32.2 3.3 34 678-711 6-41 (65)
103 2ku3_A Bromodomain-containing 58.2 2.4 8.1E-05 35.6 0.3 49 677-725 13-65 (71)
104 3o70_A PHD finger protein 13; 56.5 1.6 5.6E-05 36.2 -0.9 47 678-725 17-66 (68)
105 1wen_A Inhibitor of growth fam 55.9 5.7 0.00019 33.3 2.3 44 680-727 16-66 (71)
106 2zet_C Melanophilin; complex, 55.7 2.5 8.5E-05 40.6 0.1 46 679-725 67-116 (153)
107 2l43_A N-teminal domain from h 55.3 2.5 8.5E-05 36.8 -0.0 49 678-726 23-75 (88)
108 2lbm_A Transcriptional regulat 53.7 15 0.0005 34.9 5.0 47 677-726 60-117 (142)
109 1z60_A TFIIH basal transcripti 50.1 6 0.0002 32.4 1.5 44 681-724 16-59 (59)
110 3ask_A E3 ubiquitin-protein li 49.3 4.6 0.00016 41.2 0.8 47 680-726 174-225 (226)
111 3shb_A E3 ubiquitin-protein li 47.8 2.5 8.5E-05 36.1 -1.2 44 682-725 28-76 (77)
112 2xb1_A Pygopus homolog 2, B-ce 45.9 9.5 0.00033 34.1 2.3 48 680-727 3-62 (105)
113 2e6s_A E3 ubiquitin-protein li 45.1 4.4 0.00015 34.5 -0.1 45 681-725 27-76 (77)
114 2d8v_A Zinc finger FYVE domain 43.7 13 0.00045 31.2 2.6 31 679-713 7-38 (67)
115 2yt5_A Metal-response element- 43.5 8.4 0.00029 31.1 1.4 50 678-727 4-62 (66)
116 1weo_A Cellulose synthase, cat 42.6 24 0.00082 31.3 4.2 50 679-728 15-69 (93)
117 3asl_A E3 ubiquitin-protein li 41.7 4.6 0.00016 33.7 -0.5 45 682-726 20-69 (70)
118 1wd2_A Ariadne-1 protein homol 39.1 4.8 0.00016 32.7 -0.7 38 680-717 6-48 (60)
119 2ysm_A Myeloid/lymphoid or mix 39.0 3.4 0.00012 36.8 -1.8 45 682-726 56-104 (111)
120 2vnf_A ING 4, P29ING4, inhibit 38.0 3.9 0.00013 33.1 -1.5 41 682-725 11-58 (60)
121 4gne_A Histone-lysine N-methyl 37.6 14 0.00047 33.4 2.0 42 677-724 12-60 (107)
122 2cu8_A Cysteine-rich protein 2 37.5 15 0.00051 29.9 2.0 39 680-728 9-47 (76)
123 2co8_A NEDD9 interacting prote 37.2 20 0.0007 29.8 2.9 40 679-728 14-53 (82)
124 2dj7_A Actin-binding LIM prote 36.2 18 0.00061 30.1 2.4 40 679-728 14-53 (80)
125 3ql9_A Transcriptional regulat 36.1 34 0.0012 31.9 4.4 48 677-727 54-112 (129)
126 3mpx_A FYVE, rhogef and PH dom 35.1 8 0.00028 41.4 0.0 49 679-727 374-430 (434)
127 2pv0_B DNA (cytosine-5)-methyl 34.5 20 0.0007 39.1 3.0 45 679-726 92-148 (386)
128 2yw8_A RUN and FYVE domain-con 32.9 20 0.00069 30.4 2.2 37 677-713 16-53 (82)
129 1iml_A CRIP, cysteine rich int 32.1 13 0.00046 30.1 0.9 46 679-728 26-72 (76)
130 3c6w_A P28ING5, inhibitor of g 31.2 6.1 0.00021 31.9 -1.3 41 681-725 10-57 (59)
131 2kwj_A Zinc finger protein DPF 30.6 24 0.00082 31.7 2.4 33 681-713 2-41 (114)
132 1z2q_A LM5-1; membrane protein 30.3 34 0.0012 29.1 3.2 38 676-713 17-55 (84)
133 1y02_A CARP2, FYVE-ring finger 30.2 5.3 0.00018 36.9 -2.1 45 679-723 18-63 (120)
134 2dar_A PDZ and LIM domain prot 29.8 24 0.00081 29.7 2.1 38 680-728 25-62 (90)
135 3kqi_A GRC5, PHD finger protei 29.0 12 0.00042 31.2 0.2 47 680-726 9-61 (75)
136 1x62_A C-terminal LIM domain p 28.4 25 0.00087 28.8 2.0 38 679-727 14-51 (79)
137 3o7a_A PHD finger protein 13 v 28.3 6.7 0.00023 30.6 -1.5 42 684-725 7-51 (52)
138 1wfk_A Zinc finger, FYVE domai 28.0 33 0.0011 29.6 2.7 36 678-713 7-43 (88)
139 2kwj_A Zinc finger protein DPF 27.3 7.1 0.00024 35.2 -1.8 45 681-725 59-107 (114)
140 3t7l_A Zinc finger FYVE domain 26.7 31 0.0011 29.8 2.3 36 679-714 19-55 (90)
141 3kv5_D JMJC domain-containing 26.7 11 0.00039 42.2 -0.7 47 680-726 36-88 (488)
142 1x4u_A Zinc finger, FYVE domai 26.4 36 0.0012 28.9 2.6 37 677-713 11-48 (84)
143 1x64_A Alpha-actinin-2 associa 25.8 32 0.0011 28.9 2.2 39 679-728 24-62 (89)
144 1joc_A EEA1, early endosomal a 25.6 26 0.00088 32.2 1.6 35 679-713 68-103 (125)
145 1dvp_A HRS, hepatocyte growth 25.5 26 0.00088 34.7 1.8 34 680-713 161-195 (220)
146 2gmg_A Hypothetical protein PF 25.4 13 0.00045 33.7 -0.3 25 697-726 69-93 (105)
147 2g6q_A Inhibitor of growth pro 25.3 9.1 0.00031 31.2 -1.3 42 681-726 12-60 (62)
148 3zyq_A Hepatocyte growth facto 25.3 26 0.00088 35.1 1.7 35 679-713 163-198 (226)
149 1m3v_A FLIN4, fusion of the LI 25.0 50 0.0017 29.4 3.4 49 681-729 33-81 (122)
150 1wev_A Riken cDNA 1110020M19; 24.7 25 0.00084 30.4 1.3 46 680-725 16-71 (88)
151 1x4k_A Skeletal muscle LIM-pro 24.4 40 0.0014 26.7 2.5 27 682-709 7-33 (72)
152 1x63_A Skeletal muscle LIM-pro 24.0 43 0.0015 27.3 2.6 39 681-728 16-54 (82)
153 2rsd_A E3 SUMO-protein ligase 23.2 6.7 0.00023 32.2 -2.5 42 682-725 12-64 (68)
154 2cor_A Pinch protein; LIM doma 22.9 44 0.0015 27.5 2.5 37 680-727 15-51 (79)
155 2d8z_A Four and A half LIM dom 22.8 38 0.0013 26.8 2.0 11 702-712 51-61 (70)
156 2o35_A Hypothetical protein DU 22.8 31 0.0011 31.2 1.5 11 705-715 43-53 (105)
157 3fyb_A Protein of unknown func 22.5 32 0.0011 31.0 1.5 11 705-715 42-52 (104)
158 2l4z_A DNA endonuclease RBBP8, 22.4 31 0.0011 31.2 1.5 38 680-727 61-98 (123)
159 1x61_A Thyroid receptor intera 22.2 43 0.0015 26.6 2.2 35 680-716 33-67 (72)
160 1x4l_A Skeletal muscle LIM-pro 21.9 41 0.0014 26.8 2.0 12 681-692 6-17 (72)
161 2d8x_A Protein pinch; LIM doma 21.6 36 0.0012 27.0 1.6 32 681-714 32-63 (70)
162 2jmi_A Protein YNG1, ING1 homo 21.6 13 0.00045 32.6 -1.1 41 680-725 26-75 (90)
163 1vfy_A Phosphatidylinositol-3- 21.5 44 0.0015 27.6 2.2 32 681-712 12-44 (73)
164 2l3k_A Rhombotin-2, linker, LI 21.1 30 0.001 30.9 1.1 36 679-715 35-70 (123)
165 3a1b_A DNA (cytosine-5)-methyl 21.0 54 0.0018 31.7 2.9 44 679-726 78-134 (159)
166 1m3v_A FLIN4, fusion of the LI 20.8 93 0.0032 27.6 4.3 39 680-728 5-43 (122)
167 3vth_A Hydrogenase maturation 20.3 31 0.0011 40.7 1.4 47 679-725 110-191 (761)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=126.02 Aligned_cols=78 Identities=28% Similarity=0.547 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHhhhccCCCcccCCCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 650 DVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 650 svs~GlSeE~I~kll~q~ky~~~e~~~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
....+++++.|.++.... + ............|+||+++|..++.++.|+|+|.||..||.+||..+..||+||+.+.+
T Consensus 12 ~~~~~~s~~~i~~lp~~~-~-~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEIL-V-TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEE-C-CTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCee-e-cccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345678888887755433 3 22223345567899999999998888999999999999999999999999999998864
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=113.37 Aligned_cols=53 Identities=36% Similarity=0.922 Sum_probs=48.1
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
......|.||++.|..++.+..|+|+|.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34567899999999999889999999999999999999999999999998764
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-13 Score=110.85 Aligned_cols=54 Identities=35% Similarity=0.810 Sum_probs=48.2
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
.......|+||++.|..++.++.++|+|.||..||.+|+..+..||+||+.+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345567899999999988888999999999999999999999999999998754
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=115.43 Aligned_cols=53 Identities=32% Similarity=0.943 Sum_probs=48.5
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
..+...|+||+++|..++.++.|+|+|.||..||.+||+.+..||+||+.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44567899999999999999999999999999999999999999999998865
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.37 E-value=2.5e-13 Score=106.85 Aligned_cols=51 Identities=37% Similarity=0.987 Sum_probs=46.4
Q ss_pred CCCCcccccccccCCCCceEEcc-CCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
++...|+||+++|..++.+..++ |+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 35578999999999988888897 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=3.8e-13 Score=113.24 Aligned_cols=54 Identities=33% Similarity=0.815 Sum_probs=48.2
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
.......|+||++.|..++.+..|+|+|.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 344567899999999998888899999999999999999999999999998753
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=2.6e-12 Score=115.53 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCC---------------ceEEccCCCcccHHHHHHHH-----hcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWL-----MQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge---------------~Vv~LPCGH~FH~~CI~qWL-----~~knsCPICRkslL 728 (730)
.+..|+||+++|..+. .++.++|+|.||..||.+|| ..+..||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3468999999997653 34477999999999999999 45678999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.26 E-value=3e-12 Score=100.48 Aligned_cols=50 Identities=28% Similarity=0.665 Sum_probs=43.7
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|+||++.|.+.+ .++.++|+|.||..||.+|+..+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567999999997643 5678899999999999999999999999999874
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=109.35 Aligned_cols=52 Identities=31% Similarity=0.837 Sum_probs=42.1
Q ss_pred CCCCCcccccccccCC-----------CCceEEcc-CCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTD-----------GDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~-----------ge~Vv~LP-CGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
+.++..|+||+++|.+ ++.++.++ |+|.||..||.+||+.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3456678888888854 34455664 9999999999999999999999999864
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.2e-12 Score=104.22 Aligned_cols=53 Identities=30% Similarity=0.691 Sum_probs=45.5
Q ss_pred CCCCCcccccccccCCC----CceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~g----e~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
..+...|+||++.|.++ +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 44567899999999864 345788999999999999999999999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=2.8e-12 Score=105.46 Aligned_cols=52 Identities=29% Similarity=0.655 Sum_probs=45.3
Q ss_pred CCCCcccccccccCCC----CceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 678 ~~~~~C~ICLEefe~g----e~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
.+...|+||++.|.++ +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999998764 556788999999999999999999999999998753
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.7e-12 Score=105.18 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..+...|+||++.+.++ +.++|||.||..||.+|+..+..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 34567899999999776 78899999999999999999999999999874
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=102.63 Aligned_cols=51 Identities=25% Similarity=0.530 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
...+...|+||++.+.++ +.+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 344567899999999886 565 999999999999999999999999998753
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=8.2e-12 Score=100.34 Aligned_cols=51 Identities=27% Similarity=0.639 Sum_probs=44.0
Q ss_pred CCCcccccccccCCC----CceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 679 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 679 ~~~~C~ICLEefe~g----e~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
+...|+||++.+.++ +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356799999999864 456788999999999999999999999999998753
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.18 E-value=1.7e-11 Score=111.16 Aligned_cols=51 Identities=27% Similarity=0.642 Sum_probs=43.9
Q ss_pred CCCCCcccccccccCCCC---------------ceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge---------------~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
...++.|+||++.|.... .++.++|+|.||..||.+||..+.+||+||+.+
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 345678999999998652 367789999999999999999999999999974
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=103.89 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
......|+||++.|.++ +.++|||.||..||.+|+.....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999876 67899999999999999999999999999863
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=102.65 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=45.2
Q ss_pred CCCCCCCcccccccccCCCCc-eEEccCCCcccHHHHHHHHhcC---CCCcCCCCCCC
Q 004793 675 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQK---NLCPICKTTGL 728 (730)
Q Consensus 675 ~~~~~~~~C~ICLEefe~ge~-Vv~LPCGH~FH~~CI~qWL~~k---nsCPICRkslL 728 (730)
+...+...|+||++.|.+.+. .+.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 334556789999999998554 5788999999999999999976 78999999764
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.7e-11 Score=100.34 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|+||++.+.++ ++.++|||.||..||.+|+..+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456799999998764 578899999999999999999999999999864
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=101.95 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=43.3
Q ss_pred CCCCCCcccccccccCCCCceEEcc-CCCcccHHHHHHHHhcC--CCCcCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~~k--nsCPICRkslL 728 (730)
...+...|+||++.|.++ +.++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 344567899999999988 7899 99999999999999865 68999999754
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.2e-11 Score=99.15 Aligned_cols=50 Identities=34% Similarity=0.608 Sum_probs=42.7
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh---cCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---~knsCPICRkslLp 729 (730)
..+...|+||++.+.++ +.++|||.||..||..|+. .+..||+||+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44567899999999876 7789999999999999997 45689999998753
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=102.08 Aligned_cols=49 Identities=41% Similarity=0.931 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
..+...|+||++.+.+ +.++|||.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3456789999999876 678999999999999999999999999988753
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=2.2e-11 Score=113.77 Aligned_cols=45 Identities=36% Similarity=0.902 Sum_probs=41.5
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|+||++.|.++ +.++|||.||..||..|+..+..||+||+.+.
T Consensus 54 ~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4699999999877 78999999999999999999999999999864
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.3e-11 Score=97.31 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh-cCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-~knsCPICRkslLp 729 (730)
..+...|+||++.+.++ +.++|||.||..||.+|+. ....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34567899999999887 5689999999999999995 56789999998753
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.5e-11 Score=102.74 Aligned_cols=52 Identities=35% Similarity=0.770 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCCceEEccCC-----CcccHHHHHHHHhcCC--CCcCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQKN--LCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCG-----H~FH~~CI~qWL~~kn--sCPICRkslL 728 (730)
...+...|.||+++|..++.+ ++||+ |.||.+||++||..++ +||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 344567899999999877766 58996 9999999999999764 8999999874
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=6.9e-11 Score=99.37 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
.+...|+||++.+.++ +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4567899999999887 77899999999999999997 788999999874
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=9.6e-11 Score=98.76 Aligned_cols=49 Identities=31% Similarity=0.597 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc------CCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~------knsCPICRkslL 728 (730)
..+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34567899999999888 68899999999999999997 667999999874
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=93.56 Aligned_cols=45 Identities=33% Similarity=0.651 Sum_probs=39.2
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh---cCCCCcCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 723 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---~knsCPIC 723 (730)
...+...|+||++.+.++ +.++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345567899999999987 7889999999999999998 45689998
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=98.37 Aligned_cols=49 Identities=33% Similarity=0.685 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc------CCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~------knsCPICRkslL 728 (730)
..+...|+||++.+.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567899999999887 67899999999999999987 778999999875
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=8.4e-11 Score=104.30 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCceEE-ccCCCcccHHHHHHHHhcC-CCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~-LPCGH~FH~~CI~qWL~~k-nsCPICRkslL 728 (730)
...|+||++.|.++ +. ++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45799999999876 66 8999999999999999987 69999999864
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=4.8e-11 Score=100.05 Aligned_cols=49 Identities=35% Similarity=0.642 Sum_probs=42.7
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc-------CCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-------KNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-------knsCPICRkslL 728 (730)
..+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 44567899999999887 67899999999999999987 567999999874
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=100.49 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=42.7
Q ss_pred CCCCCCcccccccccCCCCceEEcc-CCCcccHHHHHHHHhcC--CCCcCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTG 727 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~~k--nsCPICRksl 727 (730)
...+...|+||++.|.++ +.++ |||.||..||..|+... ..||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345667899999999988 8899 99999999999999754 5899999986
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.02 E-value=3.3e-11 Score=111.33 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=2.6
Q ss_pred CCCCCCcccccccccCCCC---------------ceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge---------------~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
....++.|+||+++|.+.. .+..++|+|.||..||.+||..+.+||+||+..
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ECCCC--------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3445678999999997632 233458999999999999999999999999874
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=101.76 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 45799999999876 566 89999999999999999999999999764
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.00 E-value=1.7e-10 Score=103.13 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=42.0
Q ss_pred CCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
+...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 456799999999876 665 99999999999999999999999999875
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.5e-10 Score=105.08 Aligned_cols=50 Identities=28% Similarity=0.674 Sum_probs=44.4
Q ss_pred CCCcccccccccCCC----CceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~g----e~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
+...|+||++.|.++ +.++.++|||.||..||.+||+.+..||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 457899999999764 55688899999999999999999999999999875
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=105.00 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC-CCcCCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 729 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn-sCPICRkslLp 729 (730)
...|+||++.|.++ +.++|||.||..||..|+..+. .||+||+.+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 35799999999987 7889999999999999998554 89999998743
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=90.30 Aligned_cols=44 Identities=34% Similarity=0.928 Sum_probs=37.8
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh---cCCCCcCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 723 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---~knsCPIC 723 (730)
..+...|+||++.+.++ +.++|||.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999987 6789999999999999954 56789998
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=4e-10 Score=107.89 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=40.7
Q ss_pred CCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
....|+||++.|.++ +.+ +|||.||..||..|+.. +..||+||+.+.
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345799999999876 555 99999999999999997 778999999873
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=5.8e-10 Score=106.34 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=40.9
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC-CCcCCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn-sCPICRkslLp 729 (730)
..|+||++.|.++ +.++|||.||..||..|+.... .||+||..+..
T Consensus 79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4699999999887 7799999999999999999765 79999998753
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=7.3e-10 Score=90.27 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=40.8
Q ss_pred CCccccccc-ccCCCCc-eEEccCCCcccHHHHHHHHhc-CCCCcCCCCCCCC
Q 004793 680 EEPCCICQE-EYTDGDN-LGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGLP 729 (730)
Q Consensus 680 ~~~C~ICLE-efe~ge~-Vv~LPCGH~FH~~CI~qWL~~-knsCPICRkslLp 729 (730)
+..|+||++ .+.++.. ++.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 567999999 7877654 345799999999999999875 4679999998753
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=4.8e-10 Score=99.85 Aligned_cols=45 Identities=33% Similarity=0.606 Sum_probs=39.9
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC---CCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn---sCPICRkslL 728 (730)
..|+||++.+.++ +.++|||.||..||..|+..+. .||+||+.+.
T Consensus 22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4699999999887 6689999999999999999764 7999999764
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.90 E-value=9.9e-10 Score=95.22 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.....|+||++.+.++ +.++|||.||+.||..||..+.+||+||+.+.
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 4567899999999999 88999999999999999998899999999764
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.90 E-value=6.2e-10 Score=101.24 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC-CCcCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn-sCPICRkslL 728 (730)
...+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||+.+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 344567899999999887 7789999999999999999765 8999999875
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=3.4e-10 Score=102.09 Aligned_cols=46 Identities=26% Similarity=0.597 Sum_probs=41.2
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRksl 727 (730)
++..|+||++.|.++ +.|+|||.||..||..|+.. +..||+||+.+
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 456799999999988 88899999999999999986 66899999976
No 45
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.85 E-value=1.7e-09 Score=96.81 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.+...|+||++.+.++ +.++|||.||+.||..||....+||+||..+.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3467899999999999 88999999999999999998889999999864
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=1.1e-09 Score=99.15 Aligned_cols=53 Identities=28% Similarity=0.633 Sum_probs=45.0
Q ss_pred CCCCCcccccccccCCC----CceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~g----e~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
..+...|+||++.|... ..++.++|||.||..||.+||..+++||+||+.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 34567899999998753 345788999999999999999999999999998753
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.85 E-value=2.1e-09 Score=95.85 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCCCceEEccCC-CcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCG-H~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.+...|+||++.+.++ ++++|| |.||+.||.+||..+.+||+||+.+.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 3567899999999999 889999 99999999999998889999999874
No 48
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-09 Score=91.27 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC--CCCcCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 727 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k--nsCPICRksl 727 (730)
..+....|.||.+.+..+ +....|+|.||..||.+||+.+ .+||+||+..
T Consensus 11 y~~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CSSSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred ccCCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 345667899999999876 3445899999999999999977 7899999875
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=3e-09 Score=107.70 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC-CCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k-nsCPICRkslL 728 (730)
.....|+||++.+.++ ++++|||.||..||..||... .+||+||.++.
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3567899999999999 889999999999999999864 45999999874
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.8e-09 Score=97.45 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
...|+||++.+.++ +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 35799999999887 77899999999999999997 778999999864
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=3.5e-09 Score=115.26 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHh-cCCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-~knsCPICRkslL 728 (730)
...|+||++.+.++ +.++|||.||..||..|+. .+..||+||+.+.
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 46899999998765 8899999999999999999 7889999999874
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.75 E-value=3.4e-09 Score=87.22 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=40.6
Q ss_pred CCCcccccccccCCCCceEEc--cCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L--PCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
++..|.||++.+.+. +.+ ||||. ||..|+..|+..+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 446799999997665 555 99999 899999999998899999999874
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.73 E-value=1.8e-09 Score=101.97 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=42.1
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC-CCcCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn-sCPICRksl 727 (730)
..+...|+||++.+.++ +.++|||.||..||.+|+.... .||+||+.+
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 44567899999999988 7789999999999999998665 899999864
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=4.9e-09 Score=85.98 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=40.4
Q ss_pred CCCcccccccccCCCCceEEc--cCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L--PCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|.||++.+.+. +.+ ||||. ||..|+..|+.....||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456799999987665 455 99999 999999999998889999999874
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=2.9e-09 Score=85.15 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=38.8
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.+...|.||++.|.++ +.|+|||.||..||..| +..||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 3556799999999988 78899999999999884 668999999864
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.69 E-value=1.2e-08 Score=87.47 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCCCCceEEc--cCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
..++..|+||++.+...+. ..+ +|||.||..||..|+.. ...||+||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3456789999999865432 334 59999999999999864 567999999764
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=2.9e-09 Score=96.63 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...|+||++.|.++ +.+ +|||.||..||..|+. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 45799999999988 777 9999999999999998 78999999764
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=9.8e-09 Score=90.33 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCceEEcc-CCCcccHHHHHHHHhcC------CCCcC--CCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK------NLCPI--CKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~~k------nsCPI--CRks 726 (730)
....|+||++.|.++ ++++ |||.||+.||.+||... ..||+ |++.
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456799999999998 8885 99999999999999864 48999 9865
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=1.1e-08 Score=86.23 Aligned_cols=41 Identities=27% Similarity=0.582 Sum_probs=36.8
Q ss_pred CcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|.||++.+.+. +.++|||. ||..|+..| ..||+||+.+.
T Consensus 25 ~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 4699999998776 88899999 999999998 78999999875
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.60 E-value=2.2e-08 Score=98.66 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC-CCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k-nsCPICRkslL 728 (730)
.....|+||++.+.++ ++++|||.||..||..||... .+||+|+.++.
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4567899999999998 889999999999999999864 46999999764
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.59 E-value=2e-08 Score=96.40 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=43.3
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC-CCCcCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k-nsCPICRkslL 728 (730)
...+...|+||++.+.++ +.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 345667899999999988 778999999999999999865 48999999864
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.4e-08 Score=81.42 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=35.6
Q ss_pred CcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslLp 729 (730)
..|.||++.+.+. +.++|||. ||..|+.. ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4699999998776 77899999 99999964 3789999998753
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.4e-07 Score=78.62 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=38.8
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslLp 729 (730)
...+...|.||++.+.+. +.+||||. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999987665 88999999 99999984 4789999998753
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.38 E-value=6.1e-08 Score=103.90 Aligned_cols=52 Identities=27% Similarity=0.620 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCCCCceE-----EccCCCcccHHHHHHHHhcC-----------CCCcCCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLG-----ILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv-----~LPCGH~FH~~CI~qWL~~k-----------nsCPICRkslL 728 (730)
.+...+|+||++.+.+...+. ..+|+|.||..||.+||+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345668999999998733221 23799999999999999842 45999999763
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=1.7e-07 Score=81.89 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=39.0
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC--------CCCcC--CCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPI--CKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k--------nsCPI--CRks 726 (730)
...+|.||++++..++.+..++|||.||..||.+++..+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356799999999877555555899999999999999742 25999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.33 E-value=1.9e-07 Score=76.56 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=40.9
Q ss_pred CcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|+||++.+.++ +++ +|||+|++.||.+||..+..||++++++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5699999999988 777 89999999999999998888999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=1.5e-07 Score=80.55 Aligned_cols=41 Identities=29% Similarity=0.716 Sum_probs=35.6
Q ss_pred CcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|.||++.+.+. +.+||||. ||..|+..| ..||+||+.+.
T Consensus 19 ~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4699999998765 88899999 999999887 38999999764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.7e-07 Score=95.86 Aligned_cols=47 Identities=28% Similarity=0.450 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCCceEE-ccCCCcccHHHHHHHHhcC--CCCcC--CCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK--NLCPI--CKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~-LPCGH~FH~~CI~qWL~~k--nsCPI--CRkslL 728 (730)
....|+||++.|.++ +. +.|||.||+.||..|+... ..||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345799999999988 55 5999999999999999864 46999 998653
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.21 E-value=6.9e-07 Score=73.17 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=37.1
Q ss_pred CCCCcccccccccCCCCceEEccCC--C---cccHHHHHHHHhc--CCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCG--H---~FH~~CI~qWL~~--knsCPICRkslL 728 (730)
++...|.||+++.. +.+ .+||. | .||..||.+|+.. +..||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35568999999843 333 57855 4 8999999999985 567999998764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.19 E-value=2.6e-07 Score=99.34 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=38.0
Q ss_pred CCCcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
++..|+||++.+.+. +.+||||. ||..|+..| ..||+||+.+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 346799999999876 88899999 999999988 78999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.67 E-value=2.6e-05 Score=70.21 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=36.9
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004793 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
.|.+|--.+..- .+.+||+|+||.+|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 488887766543 477799999999999999865 578999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.41 E-value=9.4e-05 Score=75.71 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=38.7
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC--CCcCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn--sCPICRks 726 (730)
....|.||.+.+..+ +.+-.|+|.||..|+..|++.+. .||.|++.
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 467899999999876 34445999999999999998654 89999985
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.00 E-value=0.022 Score=50.91 Aligned_cols=44 Identities=34% Similarity=0.694 Sum_probs=35.7
Q ss_pred CCCcccccccccCCCCceEEccCC-CcccHHHHHHHHhcCCCCcCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCG-H~FH~~CI~qWL~~knsCPICRksl 727 (730)
+-..|..|.-..+ ..+.|. |.+|..|+...|.....||||++++
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 4567999976643 245565 9999999999999999999999976
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.68 E-value=0.044 Score=47.84 Aligned_cols=34 Identities=15% Similarity=0.443 Sum_probs=26.5
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHH
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qW 713 (730)
+..|.||++.|..+-....+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999987544333455899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.23 E-value=0.068 Score=44.49 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=36.1
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----CCcCCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGLP 729 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----sCPICRkslLp 729 (730)
.....|.||.+. ++.|..-.|...||..|+...|.... .||.|+....+
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 345679999753 44444447999999999998887543 49999876554
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.43 E-value=0.24 Score=53.81 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=32.2
Q ss_pred CcccccccccCCCCceEEccCCCc--ccHHHHHHHHhcCC--CCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~--FH~~CI~qWL~~kn--sCPICRkslL 728 (730)
..|+|-+..+..+ ++-..|.|. |-..-+.....++. .||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5699988888777 666789999 55444444444333 4999998764
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.09 E-value=0.52 Score=41.40 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=26.9
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHH
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qW 713 (730)
....+..|.||- .|...+....-.|+-.||..|+++-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 345677899985 3455544444469999999999996
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.88 E-value=0.54 Score=50.96 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=33.2
Q ss_pred CcccccccccCCCCceEEccCCCc--ccHHHHHHHHhcCC--CCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~--FH~~CI~qWL~~kn--sCPICRkslL 728 (730)
..|+|-...+..+ ++-..|.|. |-..-+.+...++. .||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4699988888777 566689999 65555555544433 4999998764
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.15 E-value=0.17 Score=41.14 Aligned_cols=49 Identities=24% Similarity=0.490 Sum_probs=34.1
Q ss_pred CCCCcccccccccCCCCceE-EccCCCcccHHHHHHHHh-----cCCCCcCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWLM-----QKNLCPICKTT 726 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv-~LPCGH~FH~~CI~qWL~-----~knsCPICRks 726 (730)
++...|.||...+.+...++ .-.|...||..|+.--.. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45567999999886544443 336999999999864322 34569999654
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.43 E-value=0.55 Score=56.60 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCceEEccCC-CcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCG-H~FH~~CI~qWL~~knsCPICRkslL 728 (730)
-+...|+|-++-+.++ ++++.| +.|-+.+|.+||..+.+||+=|.++.
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456799999999999 899997 68999999999999999999998764
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.27 E-value=0.68 Score=37.60 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=33.8
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRksl 727 (730)
...+..|.||... ++.+..-.|.-.||..|+..-|... =.||.|++..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 3455679999873 4444444799999999998765432 2499998754
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.80 E-value=0.62 Score=36.13 Aligned_cols=45 Identities=24% Similarity=0.631 Sum_probs=31.4
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCCCCC
Q 004793 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 726 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRks 726 (730)
.|.||...-..++.|..-.|...||..|+..=|... =.||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 489998765444445555799999999997645432 239999763
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.12 E-value=0.39 Score=40.18 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=33.3
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc----CCCCcCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KNLCPICKTTG 727 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~----knsCPICRksl 727 (730)
.....|.||........-|..=.|.-.||..|+..-+.. .-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 344569999877543223333369999999999765442 33599997654
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.03 E-value=0.4 Score=39.00 Aligned_cols=48 Identities=29% Similarity=0.655 Sum_probs=33.4
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCCCCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRkslL 728 (730)
..+..|.||.+. ++.+..-.|...||..|+..-|... =.||.|+...+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 345679999863 4444444699999999998655532 24999987654
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.83 E-value=1.9 Score=36.56 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCcccccccccCCCCc-eEEccCCCcccHHHHHHHHh-----cCCCCcCCCCCC
Q 004793 680 EEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~-Vv~LPCGH~FH~~CI~qWL~-----~knsCPICRksl 727 (730)
...| ||...+..... |..-.|...||..|+.--.. .+-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3345 99988754433 33446999999999953221 345699998754
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.93 E-value=2 Score=37.44 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=30.9
Q ss_pred CCCCcccccccccCCCCceEEcc-CCCcccHHHHHHHHhc
Q 004793 678 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQ 716 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~~ 716 (730)
.....|.+|.+.+++.+-|.+-. =.|+||.-|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 44567999999999986554432 5799999999999884
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.18 E-value=1.3 Score=39.17 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=31.7
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhc---CCCCcCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTT 726 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~---knsCPICRks 726 (730)
...| ||-.....+..|..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3456 89877666655555579999999999653322 2359999854
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.07 E-value=1 Score=37.83 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=32.0
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHH---------hcCCCCcCCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL---------MQKNLCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL---------~~knsCPICRkslLp 729 (730)
..| ||...+....-|..-.|...||..|+.--. ..+-.||.|+..-.|
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 345 998887644334444799999999994211 246679999765443
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.41 E-value=0.32 Score=38.70 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=32.5
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----CCcCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 725 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----sCPICRk 725 (730)
...+..|.||... ++.|..-.|...||..|+.+-|.... .||.|++
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456679999874 44455557999999999986554322 3998864
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.01 E-value=1 Score=40.23 Aligned_cols=38 Identities=21% Similarity=0.471 Sum_probs=28.6
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 715 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~ 715 (730)
..+..|.||.+.-+..+.|..-.|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 45678999988744333466668999999999987765
No 91
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.98 E-value=0.43 Score=39.86 Aligned_cols=50 Identities=30% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCCcccccccccCCCCceE-EccCCCcccHHHHHHHH----hcCCCCcCCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWL----MQKNLCPICKTTGLP 729 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv-~LPCGH~FH~~CI~qWL----~~knsCPICRkslLp 729 (730)
....| ||...+.+++.++ .-.|...||..|+.--- ..+-.||.|+....|
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 44568 7988776664333 33699999999986432 234569999876544
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.53 E-value=1.8 Score=38.11 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=34.1
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----CCcCCCCC
Q 004793 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTT 726 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----sCPICRks 726 (730)
....+..|.||... ++.+..-.|--.||..|+.+=|.... .||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34456789999865 44455557999999999987665422 49999853
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.99 E-value=1.5 Score=34.36 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=30.1
Q ss_pred cccccccccCCCCceEEc--cCCCcccHHHHHHHH----hcCCCCcCCC
Q 004793 682 PCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL----MQKNLCPICK 724 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~qWL----~~knsCPICR 724 (730)
.|.||...+.+++..+.- .|.-.||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999988665544443 488899999985321 2566799996
No 94
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=66.80 E-value=0.76 Score=43.21 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCCCcccccccccC--CCCceEEccCCCcccHHHHH
Q 004793 678 SDEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIK 711 (730)
Q Consensus 678 ~~~~~C~ICLEefe--~ge~Vv~LPCGH~FH~~CI~ 711 (730)
.....|.+|...|. .+....+..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46678999999994 23345666899999999954
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.50 E-value=9.6 Score=34.16 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=24.1
Q ss_pred CCCccccccccc------CCCCceEEccCCCcccHHHHH
Q 004793 679 DEEPCCICQEEY------TDGDNLGILDCGHDFHTNCIK 711 (730)
Q Consensus 679 ~~~~C~ICLEef------e~ge~Vv~LPCGH~FH~~CI~ 711 (730)
....|.+|+..- ..++.|..-.|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345799998763 223455566899999999995
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.24 E-value=2 Score=36.36 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEEc--cCCCcccHHHHHHHHh---------cCCCCcCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLM---------QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~qWL~---------~knsCPICRksl 727 (730)
....| ||-.....+.-|..= .|...||..|+.---. .+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 33456 898875555444444 6999999999953211 245699997643
No 97
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.26 E-value=3.8 Score=36.17 Aligned_cols=43 Identities=30% Similarity=0.760 Sum_probs=27.4
Q ss_pred CcccccccccCCCCceEEcc--CC-CcccHHHHHHHHhc----CCCCcCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LP--CG-H~FH~~CI~qWL~~----knsCPICRksl 727 (730)
..| ||..... ++.|..=. |. ..||..||. |.. +-.||.|+...
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345 9988653 43232224 65 689999997 443 33599998754
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.09 E-value=2.2 Score=38.43 Aligned_cols=46 Identities=24% Similarity=0.613 Sum_probs=31.2
Q ss_pred CcccccccccCC-CCceEEccCCCcccHHHHHHHHhcC----CCCcCCCCC
Q 004793 681 EPCCICQEEYTD-GDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 726 (730)
Q Consensus 681 ~~C~ICLEefe~-ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRks 726 (730)
..|.||.+.-.+ ++.+..-.|...||..|+.+-|... =.||.|+..
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 468899875333 3333444699999999997766532 249999863
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.78 E-value=0.85 Score=40.07 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=32.8
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----CCcCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 725 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----sCPICRk 725 (730)
..+...|.||...-...+.|..=.|...||..|+.+=|.... .||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345567999988754333344446999999999975444322 3999964
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.15 E-value=1.1 Score=36.74 Aligned_cols=45 Identities=24% Similarity=0.642 Sum_probs=31.7
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 725 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRk 725 (730)
..+..|.||.+. ++.|..-.|.-.||..|+..-|... =.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356679999864 4445544799999999998655432 23999965
No 101
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=59.06 E-value=1.4 Score=35.45 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=31.8
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRks 726 (730)
.+..|.||... ++.+..-.|.-.||..|+.+-|... =.||.|...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45679999874 4455555799999999998655432 239988653
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=58.61 E-value=7.1 Score=32.17 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=24.6
Q ss_pred CCCCcccccccccCCCCceEEc--cCCCcccHHHHH
Q 004793 678 SDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIK 711 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~ 711 (730)
.....|.+|...+.+.+..+.- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4556899999998766554433 699999999984
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=58.24 E-value=2.4 Score=35.65 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=31.3
Q ss_pred CCCCCccccccccc-CCCCceE-EccCCCcccHHHHHHHHhcC--CCCcCCCC
Q 004793 677 PSDEEPCCICQEEY-TDGDNLG-ILDCGHDFHTNCIKQWLMQK--NLCPICKT 725 (730)
Q Consensus 677 ~~~~~~C~ICLEef-e~ge~Vv-~LPCGH~FH~~CI~qWL~~k--nsCPICRk 725 (730)
......|.||.+.- .+.+.++ .=.|.-.||..|+..-..-+ =.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567799998764 2233333 33699999999997543222 24888864
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=56.54 E-value=1.6 Score=36.24 Aligned_cols=47 Identities=17% Similarity=0.442 Sum_probs=30.7
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh---cCCCCcCCCC
Q 004793 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKT 725 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---~knsCPICRk 725 (730)
.+...| ||...+....-|..-.|...||..|+.---. .+-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344557 9988765332344446999999999964321 2345999975
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.89 E-value=5.7 Score=33.28 Aligned_cols=44 Identities=30% Similarity=0.739 Sum_probs=27.4
Q ss_pred CCcccccccccCCCCceEEcc--CC-CcccHHHHHHHHhc----CCCCcCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LP--CG-H~FH~~CI~qWL~~----knsCPICRksl 727 (730)
...| ||..... ++-|..=. |. ..||..||. |.. +-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3446 8988643 43222224 66 689999997 443 23499998754
No 106
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.69 E-value=2.5 Score=40.59 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCcccccccccC--CCCceEEccCCCcccHHHHHHHHhcCC--CCcCCCC
Q 004793 679 DEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKT 725 (730)
Q Consensus 679 ~~~~C~ICLEefe--~ge~Vv~LPCGH~FH~~CI~qWL~~kn--sCPICRk 725 (730)
.+..|.+|+..|. .+....+..|.|.+|..|- .|+.... .|=+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5678999999764 4445677789999999997 2433222 2777754
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=55.26 E-value=2.5 Score=36.82 Aligned_cols=49 Identities=18% Similarity=0.443 Sum_probs=31.2
Q ss_pred CCCCccccccccc-CCCCce-EEccCCCcccHHHHHHHHhc--CCCCcCCCCC
Q 004793 678 SDEEPCCICQEEY-TDGDNL-GILDCGHDFHTNCIKQWLMQ--KNLCPICKTT 726 (730)
Q Consensus 678 ~~~~~C~ICLEef-e~ge~V-v~LPCGH~FH~~CI~qWL~~--knsCPICRks 726 (730)
+.+..|.||...- .+.+.+ ..-.|.-.||..|+..-+.- .=.||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4567899998763 222233 23369999999999754332 2249998653
No 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=53.75 E-value=15 Score=34.93 Aligned_cols=47 Identities=28% Similarity=0.532 Sum_probs=33.3
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh---------c--CCCCcCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---------Q--KNLCPICKTT 726 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---------~--knsCPICRks 726 (730)
...+..|.||.+- ++.+-.=.|--.||..||.+-|. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3445779999875 54444447999999999997653 1 2249999864
No 109
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.14 E-value=6 Score=32.39 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=30.0
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
..|--|+..+.+......-.|++.||.+|=.---+.-..||-|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 45999999986542223447999999999433223456799883
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.26 E-value=4.6 Score=41.15 Aligned_cols=47 Identities=23% Similarity=0.575 Sum_probs=28.1
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhc--CC---CCcCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KN---LCPICKTT 726 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--kn---sCPICRks 726 (730)
...|.||...-..++.+.+=.|...||..|+.+=|.. +. .||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888775334444444479999999999865553 22 49999764
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.82 E-value=2.5 Score=36.14 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=28.2
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhcC-----CCCcCCCC
Q 004793 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKT 725 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k-----nsCPICRk 725 (730)
.|.||...-..++.|..=.|...||..|+.+-|... =.||.|++
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 567776654333223333699999999998766532 24999986
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=45.86 E-value=9.5 Score=34.11 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=33.0
Q ss_pred CCcccccccccCCCCceEEc--cCCCcccHHHHHHHH------h----cCCCCcCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL------M----QKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~qWL------~----~knsCPICRksl 727 (730)
...|.||...|.+...++.- .|.-.||..|+.--- . .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35799999998665444443 599999999984221 0 234599997643
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.12 E-value=4.4 Score=34.53 Aligned_cols=45 Identities=27% Similarity=0.565 Sum_probs=30.2
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhc--C---CCCcCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--K---NLCPICKT 725 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--k---nsCPICRk 725 (730)
..|.||...-..++.|..=.|...||..|+.+=|.. + =.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368899865333433433369999999999865543 2 24999975
No 114
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.66 E-value=13 Score=31.18 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=24.7
Q ss_pred CCCcccccccccCCCCceEEccC-CCcccHHHHHHH
Q 004793 679 DEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQW 713 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPC-GH~FH~~CI~qW 713 (730)
+..-|.||.++ -.++.+.| +-+||..|.++.
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34469999998 23688899 889999998775
No 115
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=43.47 E-value=8.4 Score=31.10 Aligned_cols=50 Identities=30% Similarity=0.649 Sum_probs=33.0
Q ss_pred CCCCcccccccccCC--CCceEEccCCCcccHHHHHHHHh-------cCCCCcCCCCCC
Q 004793 678 SDEEPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLM-------QKNLCPICKTTG 727 (730)
Q Consensus 678 ~~~~~C~ICLEefe~--ge~Vv~LPCGH~FH~~CI~qWL~-------~knsCPICRksl 727 (730)
..+..|.||...... ++.|..-.|.-.||..|+..-|. ..=.|+.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999986432 33333346999999999986432 123499986543
No 116
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.59 E-value=24 Score=31.30 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=36.2
Q ss_pred CCCcccccccccCC---CCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~---ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRkslL 728 (730)
....|.||-+++.. ++. |.+-.|+--.|+.|.+-=.+ ....||.|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999998764 322 33447998899999976544 4567999998763
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=41.71 E-value=4.6 Score=33.68 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=28.6
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhc-----CCCCcCCCCC
Q 004793 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKTT 726 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-----knsCPICRks 726 (730)
.|.||...-..++.|..=.|...||..|+.+=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56788754323322322269999999999865543 2249999864
No 118
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.11 E-value=4.8 Score=32.72 Aligned_cols=38 Identities=16% Similarity=0.446 Sum_probs=27.3
Q ss_pred CCcccccccccCCCCc---eEEcc--CCCcccHHHHHHHHhcC
Q 004793 680 EEPCCICQEEYTDGDN---LGILD--CGHDFHTNCIKQWLMQK 717 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~---Vv~LP--CGH~FH~~CI~qWL~~k 717 (730)
.+.|+-|.-.++..+- +.... |++.||..|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4578888877776442 33334 89999999999987654
No 119
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.98 E-value=3.4 Score=36.84 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=29.4
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCCCCC
Q 004793 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 726 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPICRks 726 (730)
.|.||...-.....+..-.|...||..|+.+-|... -.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 577887664433334444799999999998655432 238888653
No 120
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.97 E-value=3.9 Score=33.08 Aligned_cols=41 Identities=32% Similarity=0.818 Sum_probs=24.7
Q ss_pred cccccccccCCCCceEEcc--CC-CcccHHHHHHHHhc----CCCCcCCCC
Q 004793 682 PCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKT 725 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LP--CG-H~FH~~CI~qWL~~----knsCPICRk 725 (730)
.++||..... ++.|..=. |. ..||..|+. |.. +-.||.|++
T Consensus 11 ~~C~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EETTTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEEECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3449987642 42222224 55 689999997 443 234999965
No 121
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=37.64 E-value=14 Score=33.44 Aligned_cols=42 Identities=31% Similarity=0.702 Sum_probs=26.5
Q ss_pred CCCCCcccccccccCCCCceEEc---cCCCcccHHHHHHHHhcCC----CCcCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWLMQKN----LCPICK 724 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~L---PCGH~FH~~CI~qWL~~kn----sCPICR 724 (730)
...+..|.||.+. + +++.- .|-..||..|+. |.... .||.|+
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 4456779999842 4 33333 388999999997 54322 377443
No 122
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.46 E-value=15 Score=29.88 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=25.7
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...|..|-+.+...+.|. .-+..||.+|. .|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccC
Confidence 356888888877665443 34667777774 4777777654
No 123
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.23 E-value=20 Score=29.78 Aligned_cols=40 Identities=30% Similarity=0.603 Sum_probs=27.0
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|..|-+.+...+.+. .-+..||..|. .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcC
Confidence 4467999998887665543 34667888774 4667766553
No 124
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.24 E-value=18 Score=30.10 Aligned_cols=40 Identities=28% Similarity=0.633 Sum_probs=27.7
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|..|-+.+..++.+..+ +..||.+|. .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL--DKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET--TEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEEC--CcccccccC--------CcCcCCCCcC
Confidence 345799999888766655443 667887774 5778877653
No 125
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=36.08 E-value=34 Score=31.92 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHH------hc-----CCCCcCCCCCC
Q 004793 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL------MQ-----KNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL------~~-----knsCPICRksl 727 (730)
+..+..|.||.+- ++.+-.=.|-..||.+||.+-+ +. .=.|++|+-.-
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 3345669999865 4333333689999999999752 11 12499997643
No 126
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=35.07 E-value=8 Score=41.44 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHHHh-------cCCCCcCCCCCC
Q 004793 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLM-------QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~-------~knsCPICRksl 727 (730)
....|.+|...|..-. .-.+-.||++||..|...++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3457999999987432 234557999999999977652 134587776544
No 127
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=34.48 E-value=20 Score=39.12 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=32.2
Q ss_pred CCCcccccccccCCCCceEEc--cCCCcccHHHHHHHHhc----------CCCCcCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ----------KNLCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~qWL~~----------knsCPICRks 726 (730)
.+..|.||-+. ++.+.+= .|...||.+||+.++.. +=.|=+|.-.
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34579999874 4445555 69999999999999832 2248888653
No 128
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.95 E-value=20 Score=30.39 Aligned_cols=37 Identities=22% Similarity=0.534 Sum_probs=26.8
Q ss_pred CCCCCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 677 PSDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
+.+...|.+|...|..-. .-..-.||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 344567999999998542 2234479999999997654
No 129
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.15 E-value=13 Score=30.13 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=29.3
Q ss_pred CCCcccccccccCCCCceEEccCCCcccH-HHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHT-NCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~-~CI~qWL~~knsCPICRkslL 728 (730)
.-..|..|...+.... ....=+..||. .|..+- ....|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCcee
Confidence 4467888888877653 22345677888 587653 3445888876543
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.24 E-value=6.1 Score=31.88 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=25.6
Q ss_pred CcccccccccCCCCceEEcc--CC-CcccHHHHHHHHhc----CCCCcCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKT 725 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LP--CG-H~FH~~CI~qWL~~----knsCPICRk 725 (730)
..| ||.... .++-|..=. |. ..||..|+. |.. +-.||.|++
T Consensus 10 ~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345 998864 343222224 66 699999997 443 234999965
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.62 E-value=24 Score=31.69 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=23.4
Q ss_pred CcccccccccC-------CCCceEEccCCCcccHHHHHHH
Q 004793 681 EPCCICQEEYT-------DGDNLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 681 ~~C~ICLEefe-------~ge~Vv~LPCGH~FH~~CI~qW 713 (730)
..|.||+..-. .++.|....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 35999987541 1234555579999999999754
No 132
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.28 E-value=34 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=27.7
Q ss_pred CCCCCCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 676 IPSDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
.+.+...|.+|...|..-. +-..-.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3445668999999997543 2344479999999997654
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.20 E-value=5.3 Score=36.90 Aligned_cols=45 Identities=27% Similarity=0.577 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHHHhcCCCCcCC
Q 004793 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPIC 723 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~~knsCPIC 723 (730)
....|.+|...|..-. +-..-.||.+||..|..........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 3457999999987532 23445799999999976655545556665
No 134
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.78 E-value=24 Score=29.71 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=22.1
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...|..|-+.+. ++. +..-+..||.+|. .|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCCC
Confidence 346777777764 222 2334666776664 4666666553
No 135
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.99 E-value=12 Score=31.16 Aligned_cols=47 Identities=23% Similarity=0.462 Sum_probs=30.3
Q ss_pred CCcccccccccCCCCce-EEccCCCcccHHHHHHHHh-----cCCCCcCCCCC
Q 004793 680 EEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLM-----QKNLCPICKTT 726 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~V-v~LPCGH~FH~~CI~qWL~-----~knsCPICRks 726 (730)
....+||...+..+..+ ..-.|.-.||..|+.---. .+-.||.|+..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33456998877544333 3336999999999954321 23469999754
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.37 E-value=25 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
....|..|-+.+... . +..-+..||.+|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-F--VKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS-C--EECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc-E--EEECcceeCcCcC--------eeCCCCCCC
Confidence 345688888877653 2 2345677887774 477776654
No 137
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=28.28 E-value=6.7 Score=30.58 Aligned_cols=42 Identities=19% Similarity=0.528 Sum_probs=27.4
Q ss_pred cccccccCCCCceEEccCCCcccHHHHHHHHh---cCCCCcCCCC
Q 004793 684 CICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKT 725 (730)
Q Consensus 684 ~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---~knsCPICRk 725 (730)
.||......+.-|..-.|.-.||..|+.---. .+-.||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 47877655333334446999999999964322 3456999875
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.98 E-value=33 Score=29.64 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=25.9
Q ss_pred CCCCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 678 SDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
.+...|.+|...|..-. .-..-.||.+||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 44567999999997543 2234479999999997543
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=27.29 E-value=7.1 Score=35.19 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=30.5
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----CCcCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 725 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----sCPICRk 725 (730)
..|.||...-..++.|..-.|...||..|+.+=|.... .||.|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 36888877654454444447999999999986444322 3888864
No 140
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.73 E-value=31 Score=29.84 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=26.7
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHHH
Q 004793 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWL 714 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL 714 (730)
+...|.+|...|..-. +-..-.||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3457999999997542 23455799999999986653
No 141
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.69 E-value=11 Score=42.18 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=30.6
Q ss_pred CCcccccccccCCCCc-eEEccCCCcccHHHHHHHHh-----cCCCCcCCCCC
Q 004793 680 EEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-----QKNLCPICKTT 726 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~-Vv~LPCGH~FH~~CI~qWL~-----~knsCPICRks 726 (730)
....|||...+..+.. |.+-.|.-.||..|+.---. .+-.||.|+..
T Consensus 36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3445599888753433 44446999999999953222 23459999753
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.44 E-value=36 Score=28.92 Aligned_cols=37 Identities=16% Similarity=0.404 Sum_probs=26.4
Q ss_pred CCCCCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 677 PSDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
+.+...|.+|...|..-. +-..-.||.+||..|....
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 445567999999997532 2234479999999997543
No 143
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=32 Score=28.86 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|..|.+.+.. +. +..-+..||.+|. .|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTT
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCC
Confidence 34568888887765 22 2335677887774 4777777654
No 144
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.64 E-value=26 Score=32.21 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=25.8
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
....|.+|...|..-. .-..-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4457999999997542 2344479999999997554
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.47 E-value=26 Score=34.72 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 680 EEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 680 ~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
...|.+|...|..-. .-.+-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 468999999997532 2344579999999997653
No 146
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.44 E-value=13 Score=33.75 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=16.1
Q ss_pred EEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004793 697 GILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 697 v~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
.+..||+.|. .-+.....||.|+..
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 4567999981 112234569999875
No 147
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.26 E-value=9.1 Score=31.18 Aligned_cols=42 Identities=31% Similarity=0.753 Sum_probs=25.6
Q ss_pred CcccccccccCCCCceEEcc--CC-CcccHHHHHHHHhc----CCCCcCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTT 726 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LP--CG-H~FH~~CI~qWL~~----knsCPICRks 726 (730)
..| ||.... .++-|..=. |. ..||..|+. |.. +-.||.|++.
T Consensus 12 ~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred cEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 345 998863 342222224 55 799999997 332 3359999653
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.25 E-value=26 Score=35.08 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=26.2
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHH
Q 004793 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qW 713 (730)
+...|.+|...|..-. +-.+-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3468999999998542 2345579999999997654
No 149
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.99 E-value=50 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=34.0
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
..|..|...+.+........=+..||..|..+-+..+..|-.|.+.+.+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688888777531111233456789999998877766689999988764
No 150
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.65 E-value=25 Score=30.40 Aligned_cols=46 Identities=22% Similarity=0.567 Sum_probs=30.4
Q ss_pred CCcccccccccCC-CCceEE-ccCCCcccHHHHHHHHhc--------CCCCcCCCC
Q 004793 680 EEPCCICQEEYTD-GDNLGI-LDCGHDFHTNCIKQWLMQ--------KNLCPICKT 725 (730)
Q Consensus 680 ~~~C~ICLEefe~-ge~Vv~-LPCGH~FH~~CI~qWL~~--------knsCPICRk 725 (730)
...|.||...-.. .+.+.. =.|...||..|+..-|.. .=.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 4579999876432 223333 369999999999875541 124998864
No 151
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.44 E-value=40 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=12.5
Q ss_pred cccccccccCCCCceEEccCCCcccHHH
Q 004793 682 PCCICQEEYTDGDNLGILDCGHDFHTNC 709 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~C 709 (730)
.|..|-+.+...+.++ ..-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~~-~a~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKM-EYKGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCEE-EETTEEEETTT
T ss_pred CCccCCCcccCCceEE-EECcCeecccC
Confidence 4666666555433221 12344555555
No 152
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.99 E-value=43 Score=27.32 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=24.1
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|..|-+.+...+.++ ..-+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccC
Confidence 46888887776554432 234667777664 4777776653
No 153
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=23.20 E-value=6.7 Score=32.23 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=26.3
Q ss_pred cccccccccCCCCceEEc---cCCCcccHHHHHHHH---h-----cCCCCcCCCC
Q 004793 682 PCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWL---M-----QKNLCPICKT 725 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~L---PCGH~FH~~CI~qWL---~-----~knsCPICRk 725 (730)
.| ||-.....+. ++.- .|.-.||..|+.--- . .+-.||.||.
T Consensus 12 ~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 35 8976655553 4444 388899999983210 0 1356999974
No 154
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.89 E-value=44 Score=27.47 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=20.0
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
...|.-|-+.+.. +. +.--+..||.+|. .|-.|++.|
T Consensus 15 ~~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 2cor_A 15 KYICQKCHAIIDE-QP--LIFKNDPYHPDHF--------NCANCGKEL 51 (79)
T ss_dssp CCBCTTTCCBCCS-CC--CCCSSSCCCTTTS--------BCSSSCCBC
T ss_pred CCCCccCCCEecc-eE--EEECcceeCCCCC--------EeCCCCCcc
Confidence 3457777666652 22 2234556666553 466666554
No 155
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.80 E-value=38 Score=26.77 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.1
Q ss_pred CCcccHHHHHH
Q 004793 702 GHDFHTNCIKQ 712 (730)
Q Consensus 702 GH~FH~~CI~q 712 (730)
+..||..|..+
T Consensus 51 ~~~yC~~cy~~ 61 (70)
T 2d8z_A 51 DFAYCLNCFCD 61 (70)
T ss_dssp SSEECHHHHHH
T ss_pred CeEECHHHHHH
Confidence 34455555443
No 156
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.76 E-value=31 Score=31.16 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 004793 705 FHTNCIKQWLM 715 (730)
Q Consensus 705 FH~~CI~qWL~ 715 (730)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 157
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.45 E-value=32 Score=31.05 Aligned_cols=11 Identities=55% Similarity=1.428 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 004793 705 FHTNCIKQWLM 715 (730)
Q Consensus 705 FH~~CI~qWL~ 715 (730)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.36 E-value=31 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=26.9
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
...|.-|-+.+.....+. .-+..||..|. .|-.|++.|
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL--------KCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS--------BCTTTCCBG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc--------CcCcCCCcc
Confidence 457999998887653233 35777888884 588888776
No 159
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.23 E-value=43 Score=26.64 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=20.6
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhc
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 716 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~ 716 (730)
-..|..|...+... . ....=+..||..|..+.+..
T Consensus 33 CF~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQ-H-FYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTS-C-EEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcC-c-CEeeCCeEECHHHHHHHHcc
Confidence 35677777776422 1 22335667777777766653
No 160
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.87 E-value=41 Score=26.81 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.4
Q ss_pred CcccccccccCC
Q 004793 681 EPCCICQEEYTD 692 (730)
Q Consensus 681 ~~C~ICLEefe~ 692 (730)
..|..|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 346666555553
No 161
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.61 E-value=36 Score=27.00 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=13.8
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHH
Q 004793 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL 714 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL 714 (730)
..|..|...+.... ....-+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIG--FVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSC--CEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCc--cEeECCeEECHHHhhhhc
Confidence 34555554444331 111234455555554433
No 162
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.55 E-value=13 Score=32.63 Aligned_cols=41 Identities=32% Similarity=0.582 Sum_probs=24.8
Q ss_pred CCcccccccccCCCCceEEc-cCC---CcccHHHHHHHHhc----CCCCcC-CCC
Q 004793 680 EEPCCICQEEYTDGDNLGIL-DCG---HDFHTNCIKQWLMQ----KNLCPI-CKT 725 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~L-PCG---H~FH~~CI~qWL~~----knsCPI-CRk 725 (730)
...| ||..... ++ ++.- .|. -.||..||. |.. +-.||. |++
T Consensus 26 ~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3446 9987532 33 3332 454 689999996 332 335999 864
No 163
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.50 E-value=44 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=23.9
Q ss_pred CcccccccccCCCC-ceEEccCCCcccHHHHHH
Q 004793 681 EPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQ 712 (730)
Q Consensus 681 ~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~q 712 (730)
..|.+|...|..-. +-..-.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 57999999987532 223447999999999754
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.06 E-value=30 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHh
Q 004793 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 715 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~ 715 (730)
.-..|.+|...+..++... +.=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 4456778877775544332 33467788888777664
No 165
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.99 E-value=54 Score=31.73 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCcccccccccCCCCceEEc---cCCCcccHHHHHHHHhcC----------CCCcCCCCC
Q 004793 679 DEEPCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWLMQK----------NLCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L---PCGH~FH~~CI~qWL~~k----------nsCPICRks 726 (730)
-+..|.||-+. + .|..- .|...||.+||+.++... =.|=+|.-.
T Consensus 78 ~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 34579999864 3 33333 488999999999987632 138777643
No 166
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.76 E-value=93 Score=27.61 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004793 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...|.-|-+.+...+.+.. -+..||.+|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYA--MDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEE--TTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCcccCCEeCCcEEEEE--CCceeHhhCC--------CcCCCCCccc
Confidence 3569999998887643443 4778999996 5889988773
No 167
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.34 E-value=31 Score=40.72 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=33.8
Q ss_pred CCCcccccccccCCCCc-------eEEccCCCc--------------------ccHHHHHHHHh--------cCCCCcCC
Q 004793 679 DEEPCCICQEEYTDGDN-------LGILDCGHD--------------------FHTNCIKQWLM--------QKNLCPIC 723 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~-------Vv~LPCGH~--------------------FH~~CI~qWL~--------~knsCPIC 723 (730)
+...|.-|+.++.++.. +-++.||-. .|.+|-.++-. +-..||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 44679999999887653 567778854 49999998754 22359999
Q ss_pred CC
Q 004793 724 KT 725 (730)
Q Consensus 724 Rk 725 (730)
-=
T Consensus 190 GP 191 (761)
T 3vth_A 190 GP 191 (761)
T ss_dssp SC
T ss_pred CC
Confidence 54
Done!