Query 004794
Match_columns 730
No_of_seqs 288 out of 1427
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 13:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 2.5E-39 5.4E-44 371.5 10.7 596 22-730 328-989 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 3.3E-17 7.2E-22 138.6 8.5 73 19-91 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 8E-17 1.7E-21 136.5 8.4 73 19-93 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 1.3E-16 2.8E-21 134.6 8.8 75 19-93 1-75 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.7 4E-16 8.6E-21 130.5 9.3 75 19-93 1-75 (76)
6 cd01803 Ubiquitin Ubiquitin. U 99.6 4E-16 8.7E-21 130.5 8.6 75 19-93 1-75 (76)
7 cd01802 AN1_N ubiquitin-like d 99.6 4.9E-16 1.1E-20 141.1 9.7 79 15-93 24-102 (103)
8 cd01797 NIRF_N amino-terminal 99.6 4E-16 8.6E-21 134.9 8.0 74 19-92 1-76 (78)
9 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 5E-16 1.1E-20 133.0 8.5 72 18-89 1-72 (73)
10 cd01810 ISG15_repeat2 ISG15 ub 99.6 4.9E-16 1.1E-20 131.7 8.1 73 21-93 1-73 (74)
11 cd01805 RAD23_N Ubiquitin-like 99.6 8.7E-16 1.9E-20 129.7 9.1 74 19-92 1-76 (77)
12 cd01804 midnolin_N Ubiquitin-l 99.6 1.5E-15 3.3E-20 130.7 8.8 76 18-94 1-76 (78)
13 cd01809 Scythe_N Ubiquitin-lik 99.6 1.6E-15 3.4E-20 125.7 8.5 72 19-90 1-72 (72)
14 cd01798 parkin_N amino-termina 99.6 1.4E-15 2.9E-20 127.4 7.4 70 21-90 1-70 (70)
15 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.8E-15 6.2E-20 129.1 8.1 75 18-92 2-78 (80)
16 cd01794 DC_UbP_C dendritic cel 99.6 2.3E-15 5E-20 127.7 7.2 69 21-89 1-69 (70)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 6.6E-15 1.4E-19 123.7 7.8 71 19-90 1-71 (71)
18 cd01790 Herp_N Homocysteine-re 99.5 1.2E-14 2.6E-19 127.1 7.9 72 18-89 1-78 (79)
19 PF00240 ubiquitin: Ubiquitin 99.5 1.8E-14 3.9E-19 119.1 7.6 68 24-91 1-68 (69)
20 cd01796 DDI1_N DNA damage indu 99.5 4.8E-14 1E-18 119.3 7.2 68 21-88 1-70 (71)
21 cd01812 BAG1_N Ubiquitin-like 99.5 6.5E-14 1.4E-18 116.2 7.7 70 19-89 1-70 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 8.8E-14 1.9E-18 118.8 7.5 69 26-94 5-73 (76)
23 TIGR00601 rad23 UV excision re 99.5 1.1E-13 2.3E-18 150.6 9.6 76 19-94 1-79 (378)
24 cd01763 Sumo Small ubiquitin-r 99.5 3.5E-13 7.5E-18 118.4 10.7 83 12-94 5-87 (87)
25 KOG0005 Ubiquitin-like protein 99.5 4E-14 8.7E-19 117.9 4.5 70 19-88 1-70 (70)
26 cd01813 UBP_N UBP ubiquitin pr 99.5 1.6E-13 3.6E-18 117.5 7.7 69 19-88 1-72 (74)
27 KOG0010 Ubiquitin-like protein 99.4 1.6E-13 3.4E-18 151.4 7.8 79 17-96 14-92 (493)
28 KOG0004 Ubiquitin/40S ribosoma 99.4 1.2E-13 2.5E-18 133.5 3.7 78 19-96 1-78 (156)
29 KOG0003 Ubiquitin/60s ribosoma 99.4 3.5E-14 7.7E-19 130.0 -0.2 76 19-94 1-76 (128)
30 smart00213 UBQ Ubiquitin homol 99.4 1.6E-12 3.4E-17 104.4 6.9 64 19-83 1-64 (64)
31 cd01799 Hoil1_N Ubiquitin-like 99.2 2E-11 4.4E-16 105.3 7.6 68 21-89 5-74 (75)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1E-11 2.2E-16 108.0 4.8 57 34-90 15-75 (75)
33 cd01769 UBL Ubiquitin-like dom 99.2 6.7E-11 1.5E-15 96.0 7.4 68 22-89 1-68 (69)
34 KOG0011 Nucleotide excision re 99.2 3.3E-11 7.1E-16 128.1 6.9 75 19-93 1-77 (340)
35 cd01814 NTGP5 Ubiquitin-like N 99.2 3.5E-11 7.5E-16 111.5 6.1 79 16-94 2-94 (113)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 3.2E-10 6.9E-15 94.9 8.5 71 19-89 1-72 (72)
37 cd01795 USP48_C USP ubiquitin- 98.9 2.4E-09 5.2E-14 97.7 6.6 65 29-93 15-80 (107)
38 KOG4248 Ubiquitin-like protein 98.9 2.5E-09 5.3E-14 126.1 6.8 73 20-93 4-76 (1143)
39 cd01789 Alp11_N Ubiquitin-like 98.9 1.1E-08 2.4E-13 89.8 8.9 72 19-90 2-81 (84)
40 KOG0001 Ubiquitin and ubiquiti 98.8 1.8E-08 3.9E-13 80.6 8.8 72 21-92 2-73 (75)
41 PF14560 Ubiquitin_2: Ubiquiti 98.7 6.6E-08 1.4E-12 84.7 7.8 72 19-90 2-83 (87)
42 PLN02560 enoyl-CoA reductase 98.6 5.5E-08 1.2E-12 103.9 7.9 69 19-87 1-80 (308)
43 PF13881 Rad60-SLD_2: Ubiquiti 98.6 1.9E-07 4.1E-12 86.7 9.6 76 18-93 2-91 (111)
44 cd01801 Tsc13_N Ubiquitin-like 98.5 3.7E-07 8E-12 78.5 6.6 68 20-87 2-74 (77)
45 cd01788 ElonginB Ubiquitin-lik 98.4 7.4E-07 1.6E-11 83.3 8.2 73 19-92 3-82 (119)
46 cd00196 UBQ Ubiquitin-like pro 98.4 1.7E-06 3.8E-11 64.7 7.2 67 23-89 2-68 (69)
47 cd01811 OASL_repeat1 2'-5' oli 98.2 5.4E-06 1.2E-10 72.6 7.6 72 19-91 1-77 (80)
48 PF11543 UN_NPL4: Nuclear pore 98.0 9.9E-06 2.1E-10 71.2 6.0 71 17-88 3-78 (80)
49 KOG1769 Ubiquitin-like protein 97.8 0.0002 4.3E-09 65.8 10.5 79 16-94 18-96 (99)
50 KOG3493 Ubiquitin-like protein 97.8 1.2E-05 2.6E-10 68.8 1.8 71 19-89 2-72 (73)
51 KOG1872 Ubiquitin-specific pro 97.7 4.8E-05 1E-09 85.0 6.7 74 18-92 3-77 (473)
52 KOG0006 E3 ubiquitin-protein l 97.6 6.4E-05 1.4E-09 80.7 5.8 71 19-89 1-74 (446)
53 KOG0004 Ubiquitin/40S ribosoma 97.4 6.5E-05 1.4E-09 73.6 1.2 47 101-147 2-51 (156)
54 KOG0003 Ubiquitin/60s ribosoma 97.3 5.9E-05 1.3E-09 70.2 0.2 39 105-143 8-47 (128)
55 PF08817 YukD: WXG100 protein 97.2 0.00083 1.8E-08 58.3 6.1 70 18-87 2-78 (79)
56 cd01802 AN1_N ubiquitin-like d 97.0 7E-05 1.5E-09 68.6 -2.1 62 76-142 9-73 (103)
57 KOG4495 RNA polymerase II tran 96.9 0.0022 4.9E-08 58.9 6.0 61 19-80 3-65 (110)
58 PF00789 UBX: UBX domain; Int 96.7 0.012 2.6E-07 50.7 9.3 74 15-88 3-81 (82)
59 KOG4583 Membrane-associated ER 96.6 0.00036 7.7E-09 75.6 -1.4 79 15-93 6-90 (391)
60 KOG0005 Ubiquitin-like protein 96.6 0.00053 1.2E-08 58.2 -0.1 42 103-144 6-48 (70)
61 PF10302 DUF2407: DUF2407 ubiq 96.3 0.0077 1.7E-07 55.2 5.9 57 21-77 3-64 (97)
62 COG5417 Uncharacterized small 96.3 0.016 3.4E-07 51.3 7.4 70 18-87 4-80 (81)
63 cd01793 Fubi Fubi ubiquitin-li 96.1 0.0003 6.4E-09 59.9 -4.2 40 103-142 4-44 (74)
64 smart00166 UBX Domain present 96.0 0.042 9.2E-07 47.7 8.6 71 17-87 3-78 (80)
65 KOG0013 Uncharacterized conser 95.9 0.012 2.7E-07 60.6 5.7 65 27-91 155-221 (231)
66 PF13019 Telomere_Sde2: Telome 95.7 0.045 9.8E-07 54.6 8.3 76 19-94 1-88 (162)
67 cd01767 UBX UBX (ubiquitin reg 95.6 0.082 1.8E-06 45.5 8.7 68 18-87 2-74 (77)
68 COG5227 SMT3 Ubiquitin-like pr 95.5 0.023 5E-07 52.0 5.1 77 17-93 23-99 (103)
69 PF11470 TUG-UBL1: GLUT4 regul 95.4 0.045 9.7E-07 47.0 6.2 63 25-87 3-65 (65)
70 cd01794 DC_UbP_C dendritic cel 95.3 0.0014 2.9E-08 56.1 -3.4 38 105-142 6-44 (70)
71 cd01770 p47_UBX p47-like ubiqu 95.2 0.12 2.7E-06 45.4 8.6 68 18-85 4-75 (79)
72 cd01772 SAKS1_UBX SAKS1-like U 95.1 0.14 2.9E-06 44.9 8.4 69 18-87 4-77 (79)
73 cd01774 Faf1_like2_UBX Faf1 ik 94.7 0.22 4.8E-06 44.5 8.8 70 17-87 3-82 (85)
74 cd01807 GDX_N ubiquitin-like d 94.6 0.002 4.3E-08 54.8 -4.1 38 105-142 8-46 (74)
75 KOG1639 Steroid reductase requ 94.6 0.06 1.3E-06 57.0 5.7 69 19-87 1-76 (297)
76 KOG3206 Alpha-tubulin folding 94.5 0.087 1.9E-06 54.5 6.5 74 19-92 2-83 (234)
77 PTZ00044 ubiquitin; Provisiona 94.4 0.0022 4.7E-08 54.3 -4.2 38 105-142 8-46 (76)
78 cd01796 DDI1_N DNA damage indu 94.1 0.0043 9.4E-08 52.8 -3.1 37 106-142 8-45 (71)
79 cd01771 Faf1_UBX Faf1 UBX doma 93.6 0.53 1.1E-05 41.7 8.9 72 16-88 2-78 (80)
80 cd01773 Faf1_like1_UBX Faf1 ik 93.5 0.56 1.2E-05 42.1 9.0 74 15-89 2-80 (82)
81 cd01810 ISG15_repeat2 ISG15 ub 93.4 0.0059 1.3E-07 52.0 -3.5 38 105-142 6-44 (74)
82 cd01797 NIRF_N amino-terminal 92.7 0.0085 1.8E-07 52.3 -3.7 38 105-142 8-48 (78)
83 cd01798 parkin_N amino-termina 92.6 0.0082 1.8E-07 50.4 -3.7 38 105-142 6-44 (70)
84 cd01799 Hoil1_N Ubiquitin-like 92.4 0.014 3E-07 50.7 -2.6 36 105-141 10-46 (75)
85 cd01791 Ubl5 UBL5 ubiquitin-li 92.4 0.011 2.4E-07 51.1 -3.2 38 105-142 9-47 (73)
86 cd01800 SF3a120_C Ubiquitin-li 91.6 0.014 3.1E-07 50.1 -3.5 38 105-142 5-43 (76)
87 cd01806 Nedd8 Nebb8-like ubiq 90.4 0.02 4.4E-07 47.9 -3.7 38 105-142 8-46 (76)
88 cd01804 midnolin_N Ubiquitin-l 90.1 0.019 4.2E-07 49.8 -4.1 38 105-142 9-47 (78)
89 PF09379 FERM_N: FERM N-termin 90.0 1.4 3.1E-05 37.4 7.3 68 23-90 1-77 (80)
90 cd01813 UBP_N UBP ubiquitin pr 89.8 0.031 6.6E-07 48.4 -3.1 36 106-141 8-44 (74)
91 cd01803 Ubiquitin Ubiquitin. U 89.3 0.026 5.6E-07 47.3 -3.8 38 105-142 8-46 (76)
92 cd06407 PB1_NLP A PB1 domain i 89.1 2.2 4.9E-05 38.1 8.0 71 19-90 1-81 (82)
93 cd00754 MoaD Ubiquitin domain 88.5 2.4 5.3E-05 35.9 7.7 57 30-91 17-77 (80)
94 cd01805 RAD23_N Ubiquitin-like 88.4 0.034 7.3E-07 47.1 -3.8 38 105-142 8-48 (77)
95 PF15044 CLU_N: Mitochondrial 88.4 0.73 1.6E-05 40.5 4.4 56 35-90 1-58 (76)
96 PLN02799 Molybdopterin synthas 87.5 2.8 6E-05 36.4 7.5 68 18-90 1-78 (82)
97 cd06406 PB1_P67 A PB1 domain i 87.4 3.3 7.2E-05 37.3 8.0 45 20-66 4-48 (80)
98 KOG0012 DNA damage inducible p 86.8 1.1 2.4E-05 49.9 5.7 65 27-91 11-77 (380)
99 cd01809 Scythe_N Ubiquitin-lik 86.5 0.045 9.7E-07 45.4 -4.0 38 105-142 8-46 (72)
100 PRK06488 sulfur carrier protei 85.8 4.5 9.7E-05 33.9 7.6 62 19-91 1-62 (65)
101 smart00666 PB1 PB1 domain. Pho 85.8 3.1 6.7E-05 35.6 6.8 47 19-66 2-48 (81)
102 smart00295 B41 Band 4.1 homolo 85.6 6.3 0.00014 38.4 9.7 75 17-91 2-84 (207)
103 cd01792 ISG15_repeat1 ISG15 ub 85.6 0.09 1.9E-06 45.6 -2.7 35 105-139 10-45 (80)
104 cd01812 BAG1_N Ubiquitin-like 85.2 0.094 2E-06 43.5 -2.7 36 107-142 9-45 (71)
105 PRK06437 hypothetical protein; 85.2 5.3 0.00011 34.2 7.9 55 27-90 9-63 (67)
106 PRK08364 sulfur carrier protei 85.0 6.6 0.00014 33.6 8.4 63 18-90 4-66 (70)
107 PF14836 Ubiquitin_3: Ubiquiti 84.8 4 8.7E-05 37.4 7.3 65 29-94 14-84 (88)
108 PF12754 Blt1: Cell-cycle cont 83.4 0.35 7.6E-06 52.7 0.0 68 12-79 72-159 (309)
109 cd06409 PB1_MUG70 The MUG70 pr 82.8 3.2 6.9E-05 37.8 5.8 45 20-64 2-49 (86)
110 PRK06083 sulfur carrier protei 82.7 9 0.0002 34.5 8.6 70 12-91 12-81 (84)
111 cd01763 Sumo Small ubiquitin-r 82.1 0.16 3.6E-06 44.9 -2.6 38 105-142 19-57 (87)
112 cd01815 BMSC_UbP_N Ubiquitin-l 80.8 0.18 3.9E-06 44.6 -2.7 27 116-142 19-49 (75)
113 PF00240 ubiquitin: Ubiquitin 79.6 0.089 1.9E-06 43.5 -4.9 38 105-142 3-41 (69)
114 PF14453 ThiS-like: ThiS-like 79.6 4.9 0.00011 34.1 5.5 56 19-90 1-56 (57)
115 cd01808 hPLIC_N Ubiquitin-like 79.6 0.16 3.4E-06 42.9 -3.4 33 110-142 12-45 (71)
116 PF10790 DUF2604: Protein of U 78.5 6.4 0.00014 34.6 5.9 65 27-91 4-72 (76)
117 TIGR01682 moaD molybdopterin c 77.4 16 0.00035 31.5 8.3 57 30-91 17-77 (80)
118 TIGR01687 moaD_arch MoaD famil 77.2 12 0.00026 32.7 7.5 59 29-91 16-85 (88)
119 cd06408 PB1_NoxR The PB1 domai 77.1 11 0.00023 34.5 7.2 47 18-66 2-48 (86)
120 TIGR00601 rad23 UV excision re 76.8 0.28 6.1E-06 54.7 -3.5 38 105-142 8-49 (378)
121 PF00564 PB1: PB1 domain; Int 76.7 8.7 0.00019 32.8 6.4 47 18-65 1-48 (84)
122 cd06398 PB1_Joka2 The PB1 doma 75.7 13 0.00028 33.9 7.5 71 20-91 2-88 (91)
123 cd01790 Herp_N Homocysteine-re 75.5 0.36 7.7E-06 43.0 -2.5 38 105-142 9-51 (79)
124 PF11620 GABP-alpha: GA-bindin 75.1 6.5 0.00014 36.1 5.2 62 30-91 4-65 (88)
125 TIGR02958 sec_mycoba_snm4 secr 75.0 13 0.00028 42.7 8.9 75 19-94 3-84 (452)
126 cd01795 USP48_C USP ubiquitin- 74.6 0.5 1.1E-05 44.3 -1.9 34 109-142 16-50 (107)
127 PF10209 DUF2340: Uncharacteri 74.1 8.4 0.00018 37.3 6.1 61 30-90 16-108 (122)
128 KOG2086 Protein tyrosine phosp 73.7 5.7 0.00012 44.7 5.5 70 16-85 303-376 (380)
129 cd05992 PB1 The PB1 domain is 73.4 11 0.00024 32.0 6.1 45 20-65 2-47 (81)
130 PRK05863 sulfur carrier protei 72.5 17 0.00037 30.7 7.0 57 27-91 6-62 (65)
131 PRK08053 sulfur carrier protei 69.7 34 0.00073 28.9 8.2 63 19-91 1-63 (66)
132 PF02597 ThiS: ThiS family; I 69.0 18 0.00039 30.3 6.4 61 30-92 13-75 (77)
133 PRK05659 sulfur carrier protei 68.5 30 0.00066 28.7 7.6 58 27-91 6-63 (66)
134 smart00455 RBD Raf-like Ras-bi 67.7 14 0.0003 32.0 5.5 45 21-65 2-46 (70)
135 smart00213 UBQ Ubiquitin homol 67.6 0.44 9.5E-06 38.1 -3.5 35 108-142 10-45 (64)
136 PF12436 USP7_ICP0_bdg: ICP0-b 65.3 13 0.00028 39.2 5.9 79 14-92 64-154 (249)
137 PF00794 PI3K_rbd: PI3-kinase 63.3 43 0.00093 30.6 8.1 75 16-90 14-102 (106)
138 KOG2982 Uncharacterized conser 63.1 11 0.00025 41.9 5.0 55 34-88 353-415 (418)
139 smart00144 PI3K_rbd PI3-kinase 62.4 41 0.00089 31.3 7.9 75 17-91 16-105 (108)
140 cd01760 RBD Ubiquitin-like dom 61.9 19 0.00042 31.6 5.3 45 21-65 2-46 (72)
141 cd00565 ThiS ThiaminS ubiquiti 60.9 32 0.00068 28.8 6.3 58 27-91 5-62 (65)
142 cd01814 NTGP5 Ubiquitin-like N 59.9 1.1 2.4E-05 42.6 -2.8 31 112-142 20-58 (113)
143 cd01768 RA RA (Ras-associating 59.9 59 0.0013 28.2 8.1 63 28-90 12-85 (87)
144 PF08337 Plexin_cytopl: Plexin 59.3 22 0.00049 41.9 6.9 76 17-92 188-291 (539)
145 cd01787 GRB7_RA RA (RAS-associ 57.8 55 0.0012 30.0 7.6 58 19-76 3-67 (85)
146 cd06396 PB1_NBR1 The PB1 domai 57.0 36 0.00078 30.9 6.3 36 19-55 1-38 (81)
147 PRK06944 sulfur carrier protei 55.7 71 0.0015 26.3 7.5 58 27-92 6-63 (65)
148 TIGR01683 thiS thiamine biosyn 55.1 54 0.0012 27.4 6.7 59 26-91 3-61 (64)
149 PRK07440 hypothetical protein; 53.0 98 0.0021 26.8 8.1 64 18-91 4-67 (70)
150 cd06410 PB1_UP2 Uncharacterize 51.4 42 0.00091 31.1 6.0 40 23-63 17-56 (97)
151 PF00788 RA: Ras association ( 51.2 72 0.0016 27.4 7.2 42 20-61 4-51 (93)
152 KOG0001 Ubiquitin and ubiquiti 51.1 1.8 3.8E-05 34.3 -2.6 37 105-141 7-44 (75)
153 PF02196 RBD: Raf-like Ras-bin 49.4 66 0.0014 27.9 6.6 51 21-71 3-55 (71)
154 PRK07696 sulfur carrier protei 48.6 1E+02 0.0023 26.3 7.6 58 27-91 6-64 (67)
155 cd01764 Urm1 Urm1-like ubuitin 46.5 60 0.0013 29.7 6.1 57 33-91 23-91 (94)
156 KOG4250 TANK binding protein k 45.5 37 0.00079 41.3 5.8 42 27-68 323-364 (732)
157 PF10407 Cytokin_check_N: Cdc1 44.2 59 0.0013 29.0 5.5 62 29-91 3-71 (73)
158 KOG0007 Splicing factor 3a, su 43.9 10 0.00022 41.8 0.9 50 25-74 289-339 (341)
159 PF11069 DUF2870: Protein of u 43.4 26 0.00056 32.9 3.3 33 60-93 3-37 (98)
160 PRK11130 moaD molybdopterin sy 42.5 2E+02 0.0044 25.0 8.6 53 33-90 19-77 (81)
161 PF14533 USP7_C2: Ubiquitin-sp 42.0 79 0.0017 32.7 7.0 104 29-134 34-160 (213)
162 cd06411 PB1_p51 The PB1 domain 41.0 57 0.0012 29.5 5.0 37 29-65 7-43 (78)
163 cd01769 UBL Ubiquitin-like dom 40.8 2.5 5.4E-05 34.1 -3.3 36 106-141 6-42 (69)
164 PRK11840 bifunctional sulfur c 40.7 89 0.0019 34.9 7.5 62 27-95 6-67 (326)
165 KOG2561 Adaptor protein NUB1, 39.0 11 0.00024 43.4 0.4 74 17-90 36-111 (568)
166 cd06397 PB1_UP1 Uncharacterize 37.7 86 0.0019 28.7 5.6 57 20-77 2-63 (82)
167 KOG3439 Protein conjugation fa 36.8 1.4E+02 0.0031 28.9 7.1 52 17-68 29-84 (116)
168 KOG2689 Predicted ubiquitin re 35.8 1.4E+02 0.003 32.9 7.7 71 17-87 209-284 (290)
169 PF14732 UAE_UbL: Ubiquitin/SU 34.7 48 0.001 29.9 3.6 56 33-88 2-67 (87)
170 KOG1364 Predicted ubiquitin re 34.3 50 0.0011 37.2 4.3 65 20-84 279-349 (356)
171 PF02505 MCR_D: Methyl-coenzym 34.2 69 0.0015 32.3 4.8 53 18-77 67-120 (153)
172 KOG2507 Ubiquitin regulatory p 33.9 1.4E+02 0.003 34.9 7.6 78 16-93 312-394 (506)
173 KOG0010 Ubiquitin-like protein 33.6 11 0.00025 43.6 -0.7 34 110-143 27-61 (493)
174 PF02017 CIDE-N: CIDE-N domain 33.5 1.4E+02 0.0029 27.1 6.1 65 21-91 5-72 (78)
175 KOG4146 Ubiquitin-like protein 32.3 3.2E+02 0.007 25.9 8.4 75 17-92 3-99 (101)
176 COG0089 RplW Ribosomal protein 31.7 1.5E+02 0.0032 27.8 6.2 61 27-87 20-90 (94)
177 KOG3751 Growth factor receptor 31.6 1.1E+02 0.0023 36.5 6.5 76 18-93 188-274 (622)
178 PRK05738 rplW 50S ribosomal pr 31.2 1.5E+02 0.0033 27.2 6.2 40 28-67 20-60 (92)
179 TIGR03260 met_CoM_red_D methyl 31.2 80 0.0017 31.8 4.7 52 19-77 67-118 (150)
180 PRK01777 hypothetical protein; 30.2 3E+02 0.0064 25.5 8.0 66 17-91 2-77 (95)
181 PF14847 Ras_bdg_2: Ras-bindin 30.1 1.4E+02 0.003 28.2 6.0 45 21-65 3-50 (105)
182 PF08825 E2_bind: E2 binding d 28.4 76 0.0017 28.7 3.8 55 33-88 1-69 (84)
183 cd01777 SNX27_RA Ubiquitin dom 27.8 1.1E+02 0.0024 28.2 4.7 41 19-59 2-42 (87)
184 cd06404 PB1_aPKC PB1 domain is 26.3 2.1E+02 0.0046 26.3 6.2 46 19-65 1-47 (83)
185 PF03671 Ufm1: Ubiquitin fold 26.3 2.7E+02 0.0058 25.3 6.6 57 32-88 19-76 (76)
186 PLN02560 enoyl-CoA reductase 26.1 10 0.00022 41.5 -2.5 31 111-141 17-49 (308)
187 PTZ00380 microtubule-associate 26.1 2E+02 0.0042 28.1 6.3 74 17-90 26-105 (121)
188 PF14451 Ub-Mut7C: Mut7-C ubiq 25.9 2E+02 0.0043 25.9 5.9 53 28-89 22-75 (81)
189 KOG3391 Transcriptional co-rep 25.7 3.2E+02 0.007 27.5 7.7 81 12-94 21-140 (151)
190 cd01611 GABARAP Ubiquitin doma 25.7 4.8E+02 0.01 24.8 8.7 74 16-90 22-106 (112)
191 PF12436 USP7_ICP0_bdg: ICP0-b 25.4 1.5E+02 0.0032 31.4 5.9 44 19-62 177-223 (249)
192 PF00276 Ribosomal_L23: Riboso 24.9 1.1E+02 0.0024 27.7 4.3 41 29-69 21-62 (91)
193 KOG0011 Nucleotide excision re 24.8 16 0.00034 40.7 -1.4 41 103-143 6-49 (340)
194 PF08783 DWNN: DWNN domain; I 24.5 1.6E+02 0.0035 26.3 5.0 34 21-54 1-36 (74)
195 CHL00030 rpl23 ribosomal prote 23.2 1.9E+02 0.004 26.9 5.3 39 28-66 19-58 (93)
196 cd01766 Ufm1 Urm1-like ubiquit 22.6 4.3E+02 0.0094 24.1 7.2 60 33-92 20-80 (82)
197 COG5100 NPL4 Nuclear pore prot 22.1 2.2E+02 0.0047 33.1 6.6 71 19-90 1-79 (571)
198 cd01615 CIDE_N CIDE_N domain, 21.7 2.3E+02 0.005 25.7 5.5 50 38-90 20-71 (78)
199 COG2104 ThiS Sulfur transfer p 20.9 5.3E+02 0.011 22.6 7.4 62 19-90 3-64 (68)
200 KOG4572 Predicted DNA-binding 20.9 1.6E+02 0.0034 36.9 5.5 62 27-88 3-68 (1424)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=371.47 Aligned_cols=596 Identities=20% Similarity=0.181 Sum_probs=375.1
Q ss_pred EEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCCCCC-CC
Q 004794 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-GT 100 (730)
Q Consensus 22 tVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp~ss-~~ 100 (730)
..+++.-..+...+.+..++..+|.+|..++||+...++|+|-|..++++..+..|+.+.....+..++.+...... +.
T Consensus 328 l~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~t 407 (1143)
T KOG4248|consen 328 LRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVET 407 (1143)
T ss_pred hhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCCC
Confidence 34455556677667777788888999999999999999999999999999999999999999999988776554331 11
Q ss_pred -CCCC----CCCCCc-----ccccccCCchhcccccccCCCCCcchhHHHHHhhhccCCCCCC---CCCCCc-ccccc--
Q 004794 101 -HNLP----GTSRSH-----GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIG---SGGGGI-DLREH-- 164 (730)
Q Consensus 101 -qI~v----~tGrti-----tl~V~pSdTIe~VK~~IqgEGIPpdqQRLIfAvl~S~G~~~~~---~G~~~~-~~~~~-- 164 (730)
+-++ ..+..+ ...+.......-++...+-+++-.++-...-++...+|..++. ++..+. +..+.
T Consensus 408 p~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pthq 487 (1143)
T KOG4248|consen 408 PAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTHQ 487 (1143)
T ss_pred cccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcce
Confidence 1111 111111 1222222222222221122333333333444444444443332 121222 11111
Q ss_pred -----ccCCCCccCCCCCcccccCCCCCCCCcccccCCCCccccCCCcCCCCCCCCCcCCCchhhHHHHHHHHH------
Q 004794 165 -----AMQRPERTSDAGSALDSAHQQPEQGGTRFQSNRPHSAFGIPTAISLGTLQPPVIPDSLTTLSQYLSQLR------ 233 (730)
Q Consensus 165 -----~~~~~~~ts~~~g~~~~~~~q~~q~G~~~~~~~~~~~~~~P~~~~~~~~~~~vIPDSLtTLsqyl~rm~------ 233 (730)
...+.++.+... ...++++.+.+...+. .+. +..-|||+..|+..|+...+
T Consensus 488 ~~~~pd~P~i~p~ssg~-----e~~s~~q~~~glstd~---S~~----------q~~s~~dt~~~t~Pv~~lr~~vp~~l 549 (1143)
T KOG4248|consen 488 VIARPDGPGIGPFSSGG-----EPNSPTQQGAGLSTDH---SLA----------QMVSGPDTQLTTIPVLVLRGCVPGML 549 (1143)
T ss_pred eecCCCCCCCCCCCCCC-----CCcChhhhcccccccc---chh----------hhccCCCccceeeccchhhccchhhc
Confidence 112222111100 1112222111111111 112 22233444444333333333
Q ss_pred -----HhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004794 234 -----HEFDGIGRGGGNNTAATNSTIEGNTNSASHPGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLENQAN 308 (730)
Q Consensus 234 -----~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~lp~p~~L~~v~~~t~qll~~~a~~~Ls~la~qL~~~~~ 308 (730)
+++.++ ..+++. . ++.+.. .....+.++.|++|++|+.+|+|||+|..+.|||+|+++|++.++
T Consensus 550 ~~~~~qv~~a~-d~~nq~--~---~n~q~p-----~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vs 618 (1143)
T KOG4248|consen 550 PPPGPQVASAL-DTGNQA--D---TNGQAP-----GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVS 618 (1143)
T ss_pred CCcchhHHHhh-hccccc--c---ccccCC-----CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcc
Confidence 444433 112111 1 111222 245567899999999999999999999999999999999999999
Q ss_pred CCChhhhhhhh--hHHHHHhHHHHHHHHHHHhhccceeEeecCCCCcccccccCCeeEeCCCCCCccccCCCCCCCCCcc
Q 004794 309 VTDPSLRTSIQ--TTAWSAGLLLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLMVQPLPFQPGTSF 386 (730)
Q Consensus 309 ~tD~~~R~~iQ--~~a~~~G~~~q~Lga~LlelGRttmtLrmg~tp~ea~vn~GpAvfIspsGpNpimVqp~p~q~~~~f 386 (730)
|+||..|+++| ++.++.|.+|+|||+.||||||||+|++||+| .+|+|+||||||+|+||+|++|||.+--.+|
T Consensus 619 vSdPsaral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~ 694 (1143)
T KOG4248|consen 619 VSDPSARALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELF 694 (1143)
T ss_pred cCCCcchhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhh
Confidence 99999999999 99999999999999999999999999999999 8999999999999999999999999887777
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCceee-----------eEeecCccccCCCCccccccccCCCCCCCCCcccCCCCCCC
Q 004794 387 GAIPMGSVQPGSGLVNGRSAGFLPRRID-----------IQIRRGSSMVGSNAIQEERSNTQQAPGQGNTATASGTDNLG 455 (730)
Q Consensus 387 g~~~~gs~~~~~~~~~~~g~~~~pr~~~-----------i~i~~g~s~~~~~~~~~e~~~~q~~~~~~~~~~~s~~~~~~ 455 (730)
-.|=.+... -|....|...++|.++ |.+..|.+..++++++.+..++.+....++++....
T Consensus 695 Tsi~s~~~~---~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~p~~----- 766 (1143)
T KOG4248|consen 695 TSIRSGNHI---VLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSMPDV----- 766 (1143)
T ss_pred ccccccccc---ccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCCCCc-----
Confidence 665333211 1333344444455555 555555556666666666665554444444422111
Q ss_pred CCccccCCCCCCCCCCCCceeeeeeeeeeecccCCCCCCCCC-CCCCceeeeeccceeeeeeccccCCCCCCCCCCCCCC
Q 004794 456 SQATTRNSDGSSSAGESGVRVVPVRTMVAPVPAPFGRLPSDS-SSNPVSLYYPVLGRFQHVASGLVSGEQGHQVSGEHHP 534 (730)
Q Consensus 456 ~~~~~~~~~~~~~~~~~g~r~~p~rtvvaa~p~~~~r~ps~s-s~~~~g~~~p~~~r~q~~~~~~~~~~~~~q~~~e~~~ 534 (730)
| -+|.+.-+..+|| ....|-.++|...+++|+-.--. ++ ..
T Consensus 767 -------------------------t---~l~t~~~~~~~ds~lq~qm~~~~~dv~n~g~~Q~p~~---------ia-~~ 808 (1143)
T KOG4248|consen 767 -------------------------T---NLPTGHPQPLQDSTLQPQLRSFFPDVYNGGHVQIPTP---------IA-IR 808 (1143)
T ss_pred -------------------------c---cccCCCCCCCCchhhhhhhhhhchhhhccccccccch---------hh-hh
Confidence 1 2344555677777 77888999999999985422111 11 11
Q ss_pred CCCccCCCCCCCccccc-cCCCCCCCCCCCCCCccccccCCCceeeeecccCCCCCCChhhhhhhhhhHHHHHHhhCCCC
Q 004794 535 AGLQTEQPSVPDSIGQQ-NAEDPARNGSLANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQLLRNLFPGG 613 (730)
Q Consensus 535 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~in~~~~~g~~~~~~~~~~~~~~~~q~lr~~~~~~ 613 (730)
.++....+.+.|....+ ..-...|..+.. ..+| .+-++++.++|.|+++.|-|.+
T Consensus 809 ~a~~~~~~~l~~l~~e~~s~~a~~~~~ds~--------------------~~pg----~~l~sEr~N~i~q~vkpltps~ 864 (1143)
T KOG4248|consen 809 MALDTLGTGLEELVRESFSLVAVQRGVDSI--------------------IRPG----LRLLSERFNSIAQHVKPLTPSG 864 (1143)
T ss_pred hhhhhhccchhhhccccccccCcccCcCcc--------------------cccc----cchHHHHhhhhhhccccCCccc
Confidence 22334455666666333 333333332211 2233 6778889999999999998885
Q ss_pred ceeecCCCcccccCCCCccccccccccccccCCCccccccc------CcchhHHHH--HHHhhhhccccCCCCCCCCCCC
Q 004794 614 EIHVENGGLHGTASDSVPEHAATFRDRVVSSTGSSAAEASA------TDEGIFLSN--LLHQIMPFISQHSSAEPTVTPL 685 (730)
Q Consensus 614 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~eg~~~s~--~l~~imp~isq~~~~~~~~~~~ 685 (730)
....|....+.+..... +.++...+.+.+|-++.- +-||.|.|. ++.+||+||.|+++..-.+
T Consensus 865 -~aag~~e~~nq~~pe~~-----a~t~l~lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~va~si~a--- 935 (1143)
T KOG4248|consen 865 -FAAGLLELCNQALPECL-----ALTLLCLGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVVAESIPA--- 935 (1143)
T ss_pred -cchhhHHHHhccchhhH-----HHHHHhhcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhhhccCcc---
Confidence 55566666676765443 577888888888766644 339999887 9999999999999877663
Q ss_pred CCCcccccccCCCCCCCC---CCCCcc-------cccccCCCCCCCCCcccccCC
Q 004794 686 EDTNAFEHRMSQDSSTHA---GSSSVR-------TSRRQSDSEPSAPNPKRQKME 730 (730)
Q Consensus 686 ~~~~~~~~~~~~~ss~~~---~~s~~~-------~s~~~~~~~~~~pnskrqk~e 730 (730)
+-..--.++...+.|.++ |++.+. .++++ .+.++++.+|+|+||
T Consensus 936 ~t~t~~~sn~rv~~s~q~~~e~~t~v~~~~~a~p~sq~~-~~sp~~~tsm~Q~te 989 (1143)
T KOG4248|consen 936 GTDTGLGSNRRVGDSPQALPEEPTEVQGAERASPESQRE-NASPAPGTSMEQATE 989 (1143)
T ss_pred cchhhccccccccccccccccccchhccccccCcccccc-cCCCCCcccHHHHhh
Confidence 223334555566666653 567776 66666 889999999999986
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.70 E-value=3.3e-17 Score=138.63 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=71.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
|+|+||+.+|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|+++++|||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999884
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.68 E-value=8e-17 Score=136.48 Aligned_cols=73 Identities=30% Similarity=0.357 Sum_probs=70.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+|+||+. ++++++|++++||++||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999984 78999999999999999999999999999999999999999999999999999999999999876
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.68 E-value=1.3e-16 Score=134.60 Aligned_cols=75 Identities=33% Similarity=0.469 Sum_probs=73.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999765
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.66 E-value=4e-16 Score=130.49 Aligned_cols=75 Identities=32% Similarity=0.533 Sum_probs=72.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998765
No 6
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.65 E-value=4e-16 Score=130.49 Aligned_cols=75 Identities=37% Similarity=0.564 Sum_probs=73.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999865
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.65 E-value=4.9e-16 Score=141.12 Aligned_cols=79 Identities=30% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++++++
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999999866
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.64 E-value=4e-16 Score=134.86 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=70.8
Q ss_pred EEEEEEecCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtldGKt-~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
|+|+||+++|++ +.++ +++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999999864
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.64 E-value=5e-16 Score=133.02 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
+|+|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.|+.|+|+++|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999975
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=4.9e-16 Score=131.70 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=70.8
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999765
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.63 E-value=8.7e-16 Score=129.67 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=71.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGI--PpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++ ++++|||+|+|+.|+|+.+|++|+|++|++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999875
No 12
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.62 E-value=1.5e-15 Score=130.69 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=72.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
.|+|+||+..|+.+.++|++++||.+||++|+++.++++++|||+|+||.|+|+ +|++|||++|++|||+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 389999999999999999999999999999999999999999999999999999 9999999999999999987653
No 13
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=1.6e-15 Score=125.70 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|+|+||+++|+++.++|++++||.+||++|++++|+++++|+|+|+|+.|+|+++|++|+|++|++|||++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.61 E-value=1.4e-15 Score=127.37 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.1
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|+||+++|+++.++|++++||.+||++|++++|+++++|+|+|+||.|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 15
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=2.8e-15 Score=129.12 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=72.1
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL--IF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
.|+|+||+++|+++.++|++++||.+||++|++++++++++||| +|+|+.|+|+++|++|||++|++|||++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999999999853
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=2.3e-15 Score=127.68 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.1
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
++||.++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=6.6e-15 Score=123.72 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|+|+||+.+|+ +.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999975
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.54 E-value=1.2e-14 Score=127.07 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=64.9
Q ss_pred cEEEEEEecCCcEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCchhhcccc--ccCCCEEEEee
Q 004794 18 TIEIKIKTLDSQTYT--LRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (730)
Q Consensus 18 tMqItVKtldGKt~t--LeVdpsdTV~dLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsDYG--IedGSTLhLVl 89 (730)
.|.|+||+++++++. +++++++||.+||++|++..+ .++++|||||+||+|+|+.+|++|. +.++++||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 378999999999955 555899999999999999874 4579999999999999999999996 99999999986
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.53 E-value=1.8e-14 Score=119.13 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=66.0
Q ss_pred EecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 24 KtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
|+++|+.|.++|++++||.+||++|+.++++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.49 E-value=4.8e-14 Score=119.29 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEec-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-hhhccccccCCCEEEEe
Q 004794 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 21 ItVKtl-dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTLhLV 88 (730)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999988 68999999999999983
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.49 E-value=6.5e-14 Score=116.18 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
|+|+||+. |+.+.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 89999999999999999999999999999999999999999999999999999999999974
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.47 E-value=8.8e-14 Score=118.84 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 26 ldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
++|+++.|+|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+++|++|+|+++++|||+++.+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999998764
No 23
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.1e-13 Score=150.59 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=73.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektG---IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999988764
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.46 E-value=3.5e-13 Score=118.35 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
..+....|+|+|++.+|+++.++|.+++|+..||++++++.|+++++|||+|+|+.|+|+.|+++|+|+++++|++++++
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004794 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 85 ~GG 87 (87)
T cd01763 85 TGG 87 (87)
T ss_pred ccC
Confidence 763
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4e-14 Score=117.91 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEe
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
|.|+||++.||.+.++++++++|+.+|++|+++.||||.+|||+|.||.+.||++-++|++.-|++|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 26
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=1.6e-13 Score=117.55 Aligned_cols=69 Identities=30% Similarity=0.465 Sum_probs=66.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCCchhhccccccCCCEEEEe
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF---~GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
|.|.||+ .|++|.++|++++||.+||++|++++++|+++|||+| +||.|+|+.+|++|+|++|++|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 5789999 7899999999999999999999999999999999996 8999999999999999999999997
No 27
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.43 E-value=1.6e-13 Score=151.43 Aligned_cols=79 Identities=35% Similarity=0.579 Sum_probs=74.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp~ 96 (730)
..|+|+||+.+. ++.|.|..+.||++||++|...+++++++++|||+||+|||+++|..|||+||+|||||++....+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 569999999987 8999999999999999999999999999999999999999999999999999999999999765443
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.2e-13 Score=133.45 Aligned_cols=78 Identities=36% Similarity=0.543 Sum_probs=75.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp~ 96 (730)
|+|+|+++.++++.++|+.++||..+|.+|+++++||+++|||||.|+.|+|+++|+||+|+..+||||++++.++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999987643
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.5e-14 Score=130.01 Aligned_cols=76 Identities=36% Similarity=0.544 Sum_probs=74.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+++++++.||+++++|++++||..||.+|..++|+|+++|+|+|+||.|+|..||++|+|+..+|||+++|+.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999886
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=1.6e-12 Score=104.38 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGS 83 (730)
|+|+||+.+ +.+.++|++++||.+||++|+.++++++++|+|+|+|+.|+|+++|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999999999999999999999999999999875
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.24 E-value=2e-11 Score=105.25 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=60.9
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-Cchhhcccccc-CCCEEEEee
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLk-DdkTLsDYGIe-dGSTLhLVl 89 (730)
|.=|...++++.++|++++||.+||++|++++|+|+++||| |.|+.|. |+++|++|+|+ +|+++||.+
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 33345568999999999999999999999999999999999 9999885 66999999998 889999975
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.22 E-value=1e-11 Score=107.95 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=51.0
Q ss_pred Eec-CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 34 RVD-KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 34 eVd-psdTV~dLKekIaekt--GIP-peqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+|. .++||.+||++|+++. +++ +++|||||+||.|+|+++|++|+|++|++|||+.+
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 344 4789999999999996 475 89999999999999999999999999999999863
No 33
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.18 E-value=6.7e-11 Score=96.04 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.5
Q ss_pred EEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 22 tVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
+||..+|+.+.+++++++||.+||++|++.+++++++|+|+|+|+.|+|+.+|.+|+|.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36777899999999999999999999999999999999999999999999999999999999999875
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.17 E-value=3.3e-11 Score=128.09 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+|+||++++.+|+++|.+++||.++|++|+...| +|.+.|+|||+||+|+|+.+|.+|+|+++..|.|++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 79999999999999999999999999999999998 9999999999999999999999999999999999998876
No 35
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.17 E-value=3.5e-11 Score=111.54 Aligned_cols=79 Identities=28% Similarity=0.368 Sum_probs=68.6
Q ss_pred CCcEEEEEEecCCcEEE-EEecCCCCHHHHHHHHHHHh-----CCC--CCCeEEEeCCeecCCchhhcccc------ccC
Q 004794 16 ETTIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVT-----GVL--SEQQRLICRGKVLKDDQLLSAYH------VED 81 (730)
Q Consensus 16 ~~tMqItVKtldGKt~t-LeVdpsdTV~dLKekIaekt-----GIP--peqQRLIF~GKvLkDdkTLsDYG------Ied 81 (730)
++.+.|++|..+|..+- +.+.+++||.+||++|++.+ ++| +++|||||.||+|+|++||++|+ +..
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 35689999999997654 78899999999999999555 455 99999999999999999999999 777
Q ss_pred CCEEEEeeecCCC
Q 004794 82 GHTLHMVVRQPVP 94 (730)
Q Consensus 82 GSTLhLVlRlpgg 94 (730)
..|+||++|.+..
T Consensus 82 ~~TmHvvlr~~~~ 94 (113)
T cd01814 82 VITMHVVVQPPLA 94 (113)
T ss_pred ceEEEEEecCCCC
Confidence 8999999997653
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.10 E-value=3.2e-10 Score=94.89 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
|+|+|+..+|+.+.+.|.+++++..|+++++++.+++. +.++|+|+|+.|.+++|+++|+|++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999974
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.90 E-value=2.4e-09 Score=97.69 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=59.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-hhhccccccCCCEEEEeeecCC
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTLhLVlRlpg 93 (730)
+...+.|++++||.+||.+|..+++++|++|+|+|.|+.|.|+ ++|++|||..+++|+|.+..|.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 3467889999999999999999999999999999999999655 8999999999999999987554
No 38
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.5e-09 Score=126.09 Aligned_cols=73 Identities=40% Similarity=0.684 Sum_probs=70.1
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 20 qItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
.|+||++|.++.+|.|...+||++||+.|.++..|+.+.|||||.|++|.|+|++.+|+| ||.+|||+-|.+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 499999999999999999999999999999999999999999999999999999999999 9999999999543
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.86 E-value=1.1e-08 Score=89.82 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=59.9
Q ss_pred EEEEEEecC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCe-----ec-CCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtld-GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~GK-----vL-kDdkTLsDYGIedGSTLhLVlR 90 (730)
+.|+|+... ......++.+.+||.+||++|+..+|+++..|||. |.|+ .| +|+++|++|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 566776643 33455669999999999999999999999999995 7887 45 6779999999999999999853
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=80.55 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.6
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
+++++..|+.+.+++....+|..+|.+|+.+.+++.++|+|.|.|+.|.|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999999999999999999999999999999999999999999999999999999999998764
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.67 E-value=6.6e-08 Score=84.69 Aligned_cols=72 Identities=28% Similarity=0.495 Sum_probs=59.0
Q ss_pred EEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C---e---ec-CCchhhccccccCCCEEEEe
Q 004794 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G---K---VL-KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtldG--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-G---K---vL-kDdkTLsDYGIedGSTLhLV 88 (730)
++|+|..... +.+..++++++||.+||.+|+..+|++++.|+|.|. . . .| +|+++|.+|++++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6778877655 488899999999999999999999999999999877 2 1 23 56799999999999999997
Q ss_pred ee
Q 004794 89 VR 90 (730)
Q Consensus 89 lR 90 (730)
=.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 43
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.64 E-value=5.5e-08 Score=103.93 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=61.9
Q ss_pred EEEEEEecCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCCchhhccccccCCCEEEE
Q 004794 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 19 MqItVKtldGKt~---tLeVdpsdTV~dLKekIaektGI-PpeqQRLIF~---G----KvLkDdkTLsDYGIedGSTLhL 87 (730)
|+|+|+..+||.+ +|+|+++.||++||++|+++.++ ++++|||++. | +.|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998889887 79999999999999999999986 8999999983 3 3789999999999999998765
No 43
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.61 E-value=1.9e-07 Score=86.69 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=59.5
Q ss_pred cEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCCchhhccccccCCC------
Q 004794 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (730)
Q Consensus 18 tMqItVKtldGK-t~tLeVdpsdTV~dLKekIaektG-------IPpeqQRLIF~GKvLkDdkTLsDYGIedGS------ 83 (730)
.+.|+++..+|+ ...+.+++++||.+||+.|...+. ..+..+||||.||+|+|+++|++|.+.-|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 578899999999 778999999999999999998652 233678999999999999999999987665
Q ss_pred EEEEeeecCC
Q 004794 84 TLHMVVRQPV 93 (730)
Q Consensus 84 TLhLVlRlpg 93 (730)
++||+++...
T Consensus 82 vmHlvvrp~~ 91 (111)
T PF13881_consen 82 VMHLVVRPNA 91 (111)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEecCCC
Confidence 7999998654
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.46 E-value=3.7e-07 Score=78.52 Aligned_cols=68 Identities=31% Similarity=0.353 Sum_probs=54.5
Q ss_pred EEEEEecCCcEEE-EEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCCchhhccccccCCCEEEE
Q 004794 20 EIKIKTLDSQTYT-LRVD-KQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 20 qItVKtldGKt~t-LeVd-psdTV~dLKekIaektG-IPpeqQRLI--F~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
+|.++....+.+. ++++ ++.||.+||+.|++..+ +++++|||. +.|+.|+|+++|.+|||.+|++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4566654413332 4444 88999999999999986 578999885 8899999999999999999999886
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.43 E-value=7.4e-07 Score=83.27 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=62.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccc-------cCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGI-------edGSTLhLVlRl 91 (730)
|-|.||- ...+|.++++++.||.+||++|+.....||++|||+..+.+|+|++||+|||+ +...+|-|.+|.
T Consensus 3 vFlmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 3344544 34567789999999999999999999999999999966788999999999999 668899998886
Q ss_pred C
Q 004794 92 P 92 (730)
Q Consensus 92 p 92 (730)
.
T Consensus 82 ~ 82 (119)
T cd01788 82 S 82 (119)
T ss_pred C
Confidence 3
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.35 E-value=1.7e-06 Score=64.72 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.2
Q ss_pred EEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 23 VKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
|+..+++...+.+.+..||.+||++|..+++++++.++|+++|+.+++...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788889999999999999999999999999999999999999999888999999999999874
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.19 E-value=5.4e-06 Score=72.55 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=64.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G-----KvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
++|+||......+++.|+|..+|.+||++|....+++- .|||.|.. ..|.+.++|++|||..+..|.|+...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999875 99999973 36789999999999988888887643
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.02 E-value=9.9e-06 Score=71.25 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=44.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CCchhhccccccCCCEEEEe
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G---KvL--kDdkTLsDYGIedGSTLhLV 88 (730)
..|-|.|++.+| .+.|+|++++|+.+||++|.+.++++.+.|.|..+- +.| .++++|+++||++|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 458899999764 567899999999999999999999999999886442 245 46799999999999999874
No 49
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0002 Score=65.81 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
...|.|+|+..++..+.+.|..+.+...|++..+++.|+.....|++|+|+.+++.+|=++++.++|+.|.++..+.++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 5678888988788888999999999999999999999999999999999999999999999999999999999887654
No 50
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.2e-05 Score=68.77 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=63.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
+++.+...-||+..+.+.+++||.+||+.|+.++|..++...|-.-.-+++|.-+|++|.|.+|..+.|..
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 56777777799999999999999999999999999999988887556788999999999999999888763
No 51
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=4.8e-05 Score=85.04 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=67.9
Q ss_pred cEEEEEEecCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 18 TIEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtldGKt~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
...|.||+ .|+.|.++ ++.++|+..||.+++..+|++|++||++++|+.|+|+-.+...+|+++.+|+|+-...
T Consensus 3 ~~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 3 SDTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred cceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 35688998 58999987 9999999999999999999999999999999999999999999999999999986543
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=6.4e-05 Score=80.69 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=61.7
Q ss_pred EEEEEEec---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtl---dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
|.+.|.+. ....+.|+|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+..-+.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 45666653 124577899999999999999999999999999999999999999999999998888999884
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=6.5e-05 Score=73.64 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhhhcc
Q 004794 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (730)
Q Consensus 101 qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAvl~S~ 147 (730)
+||+ .+++++.+.|+++++|+++|++|| +||||+|||||||+.-.--
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe 51 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc
Confidence 4566 678899999999999999999999 9999999999999976633
No 54
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=5.9e-05 Score=70.22 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAv 143 (730)
.+|++++++|+++++|.++|++|+ ++|||+++|+|+|+-
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~ 47 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcc
Confidence 679999999999999999999999 999999999999863
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.19 E-value=0.00083 Score=58.25 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=51.9
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-eCCeecCCchhhccccccCCCEEEE
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---E---QQRLI-CRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp---e---qQRLI-F~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
.++|+|...+++.+.+.+..+.+|++|...|.+..+.+. . ..+|. -+|..|+++++|++|+|.||+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 467888886678999999999999999999999887643 2 24565 6689999999999999999999987
No 56
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=97.04 E-value=7e-05 Score=68.61 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=53.6
Q ss_pred cccccCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 76 DYGIedGSTLhLVlRlpggp~ss~~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
-|.+.+-.++|++++... .|++++ ..|+.+.+.|.++++|.+||.+|+ ++|||+++|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYD-----TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred ccccCCcceeEEeeccCC-----CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 356777889999999755 577766 678889999999999999999999 89999999999974
No 57
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.87 E-value=0.0022 Score=58.93 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=51.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCchhhcccccc
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQLLSAYHVE 80 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G--KvLkDdkTLsDYGIe 80 (730)
|-|.||- +..+|.++.+++.||-+||.+++....-|++.|||+.-. .+|+|.++|+|||..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455655 346678899999999999999999999999999998743 578999999999764
No 58
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.72 E-value=0.012 Score=50.70 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCCc--hhhccccccCCCEEEEe
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLI--F~GKvLkDd--kTLsDYGIedGSTLhLV 88 (730)
......|.||..+|+.+...+.+++||.+|.+-|..+...+... .+|+ |-.+.|.++ ++|+++|+....+|+|-
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 34568999999999999999999999999999999888777664 6776 556777543 69999999999998873
No 59
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00036 Score=75.58 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=62.1
Q ss_pred CCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCchhhcccccc--CCCEEEEe
Q 004794 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVE--DGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtldG--Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF~GKvLkDdkTLsDYGIe--dGSTLhLV 88 (730)
.+..+.++||..+. |.+.|..+..+||.+||..++..+--.+ .+|||||.||.|.|...|.|+=++ +.+++||+
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 34457778887765 4566777889999999999999875333 789999999999999999887553 45788888
Q ss_pred eecCC
Q 004794 89 VRQPV 93 (730)
Q Consensus 89 lRlpg 93 (730)
+..+.
T Consensus 86 cnsk~ 90 (391)
T KOG4583|consen 86 CNSKE 90 (391)
T ss_pred cCCCC
Confidence 87654
No 60
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00053 Score=58.19 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=38.0
Q ss_pred CCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004794 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 103 ~v~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAvl 144 (730)
++.+++.+.+.++++|.|+-+|..+. ++||||.+|||||+--
T Consensus 6 ktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gk 48 (70)
T KOG0005|consen 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGK 48 (70)
T ss_pred eeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccc
Confidence 34788999999999999999999999 9999999999999743
No 61
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.35 E-value=0.0077 Score=55.16 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=44.3
Q ss_pred EEEEecC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCchhhccc
Q 004794 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (730)
Q Consensus 21 ItVKtld-GKt~tLeVd--psdTV~dLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsDY 77 (730)
|+|++.+ -..+.|+|. .+.||..||++|.++.. ..-.++||||+||.|.|...|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 5666655 234667777 78999999999999983 334678999999999998777654
No 62
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.32 E-value=0.016 Score=51.32 Aligned_cols=70 Identities=21% Similarity=0.449 Sum_probs=58.0
Q ss_pred cEEEEE--EecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCchhhccccccCCCEEEE
Q 004794 18 TIEIKI--KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItV--KtldGKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIF~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
.|+|+| +.-+|++|.|++....+|+.|-..+.+...+.. ...|..-+++.|.+++.|.+|+|.+|+.|.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 355554 445689999999999999999999988766432 4568889999999999999999999999875
No 63
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.10 E-value=0.0003 Score=59.93 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 103 ~v~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+++.++|.+++||++||.+|+ ++|||+++|+|+|+
T Consensus 4 ~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 4 FVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred EEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 33334667899999999999999999 99999999999975
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.02 E-value=0.042 Score=47.65 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=58.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---chhhccccccCCCEEEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTLhL 87 (730)
...+|.||..+|+.+......++||.+|.+-|....+......+|+ |-.|.|.+ +++|.+.|+....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4578999999999999999999999999999966666665667776 55677753 47999999988887765
No 65
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.012 Score=60.59 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=57.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCC--EEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH--TLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGS--TLhLVlRl 91 (730)
.++.+.+.+...+|+.++|.++..+.++.+-.|+++|.|++|.|...|..|+|+.|. .|.+++..
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEecc
Confidence 467788899999999999999999999999999999999999999999999999994 44444433
No 66
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.68 E-value=0.045 Score=54.61 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=59.8
Q ss_pred EEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC-Ceec--CCchhhccccccCC----CEEE
Q 004794 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR-GKVL--KDDQLLSAYHVEDG----HTLH 86 (730)
Q Consensus 19 MqItVKtldG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLIF~-GKvL--kDdkTLsDYGIedG----STLh 86 (730)
|.|+|++++| .++.+.+..+.||.+|+..|...++++...| .|.+. ++.| .++..+..+.-.+. -+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999998874 45553 4554 56667777654443 4788
Q ss_pred EeeecCCC
Q 004794 87 MVVRQPVP 94 (730)
Q Consensus 87 LVlRlpgg 94 (730)
|++++.++
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888775
No 67
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.62 E-value=0.082 Score=45.46 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=53.8
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---chhhccccccCCCEEEE
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTLhL 87 (730)
..+|.||..+|+.+......++||.+|.+-|.....- ....+|+ |-.|.|.| +++|.+.|+.+ +++.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 4679999999999999999999999999999876543 4556676 55677754 68999999984 44444
No 68
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.023 Score=51.97 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=68.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
..|.++|...++.++.+.|..+.+...|.+..+...|-..+..|++|+|+.++-++|-.|++.++++.|..+..+-+
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG 99 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG 99 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence 35677777778899999999999999999999999999999999999999999999999999999998877765544
No 69
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.38 E-value=0.045 Score=47.00 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=46.9
Q ss_pred ecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEE
Q 004794 25 TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 25 tldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
..+++.+.+.|.++.++.++-++...++++.+++-.|.|++|.|+-+.++.-.|+.+|++|.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 347889999999999999999999999999999999999999999999999999999999875
No 70
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.25 E-value=0.0014 Score=56.10 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+++.++|.+++||.++|.+|+ .+|+|+++|+|+|+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 568888999999999999999999 89999999999874
No 71
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.21 E-value=0.12 Score=45.38 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=54.7
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecCC-chhhccccccCCCEE
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIP-peqQRLI--F~GKvLkD-dkTLsDYGIedGSTL 85 (730)
..+|.||..+|+.+...+..++||.+|++-|....+.. .....|+ |-.|.|.| ++||.|.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 57899999999999999999999999999999875432 2455665 67888854 689999999865443
No 72
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.09 E-value=0.14 Score=44.85 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=56.6
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---chhhccccccCCCEEEE
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTLhL 87 (730)
..+|.||..+|+.+.-....++||.+|++-|....+.. ....|+ |--|.+.+ +++|.+.|+....+|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46899999999999999999999999999998765432 556676 55788853 48999999998888876
No 73
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.65 E-value=0.22 Score=44.48 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecC--------CchhhccccccCCCEEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLK--------DDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G--KvLk--------DdkTLsDYGIedGSTLh 86 (730)
..++|.||..+|+.+.-....++||.+|..-|.. .+..++...|+++= |.|. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4689999999999999999999999999999964 45566888888654 7775 35799999999888776
Q ss_pred E
Q 004794 87 M 87 (730)
Q Consensus 87 L 87 (730)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 74
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.63 E-value=0.002 Score=54.81 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|++..++|.+++||+++|..|+ ++|+|+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457788899999999999999999 89999999999864
No 75
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.56 E-value=0.06 Score=57.02 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=51.3
Q ss_pred EEEEEEecCC-cEEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEE----EeCCeecCCchhhccccccCCCEEEE
Q 004794 19 IEIKIKTLDS-QTYT-LRVDKQVPVPALKEQIASV-TGVLSEQQRL----ICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 19 MqItVKtldG-Kt~t-LeVdpsdTV~dLKekIaek-tGIPpeqQRL----IF~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
|+|+++...+ -.++ .+.+...||.|++++|..+ ..+.+.++|+ .-+||.|.|+.+|++|+..++.+|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 6788877654 2334 5667889999999777655 4677755443 35699999999999999999977654
No 76
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.087 Score=54.55 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=56.9
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC--e---ec-CCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~G--K---vL-kDdkTLsDYGIedGSTLhLVlR 90 (730)
++|+|.+..-+ ....+..+++||.+||.+++.++|.+++.++|. |+| | .| +++..|..|+..||..||++=.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56677654322 233466789999999999999999999999985 555 2 45 4568999999999999999864
Q ss_pred cC
Q 004794 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
.+
T Consensus 82 ~~ 83 (234)
T KOG3206|consen 82 NA 83 (234)
T ss_pred Cc
Confidence 43
No 77
>PTZ00044 ubiquitin; Provisional
Probab=94.45 E-value=0.0022 Score=54.32 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+++.+.|.+++||++||.+|+ ..|+|+++|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 567888899999999999999999 89999999999974
No 78
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.09 E-value=0.0043 Score=52.79 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.0
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.|+++.+.|.++++|.+||.+|+ .+|||+++|+|+|+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 57778899999999999999999 89999999999974
No 79
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.62 E-value=0.53 Score=41.69 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=60.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CchhhccccccCCCEEEEe
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsDYGIedGSTLhLV 88 (730)
+...+|.||..+|+.+.-....++++.+|..-|..+ +.+++..+|+ |--|.+. .+.+|.+.|+....+|.|-
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 456899999999999999999999999999999865 7777788887 5567774 2479999999988888764
No 80
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.54 E-value=0.56 Score=42.15 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=62.2
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CchhhccccccCCCEEEEee
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsDYGIedGSTLhLVl 89 (730)
+...-+|.||..+|+.+.-....++++.+|-.-|.. .+.+++...|+ |--|.+. .+.+|.+.|+....+|.|--
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 345678999999999999999999999999999988 57788889998 4467773 34899999999999988743
No 81
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=93.40 E-value=0.0059 Score=52.03 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+++.++|+++++|.++|.+|+ ..|+|+++|+|+|+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 567888899999999999999999 89999999999864
No 82
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=92.67 E-value=0.0085 Score=52.26 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=32.2
Q ss_pred CCCCC-ccc-ccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRS-HGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrt-itl-~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+. +.+ .+.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 44554 467 4889999999999999 89999999999984
No 83
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=92.59 E-value=0.0082 Score=50.43 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+...++|+++++|+.||.+|+ ++|+|+++|+|+|+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457788899999999999999999 89999999999865
No 84
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=92.42 E-value=0.014 Score=50.75 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
..+.+..+.|.+++||+.+|.+++ ++|||+++||| |
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~ 46 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V 46 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E
Confidence 456778899999999999999999 99999999999 5
No 85
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=92.40 E-value=0.011 Score=51.09 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||++||.+|+ +.|+|+++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 346777789999999999999998 77999999999976
No 86
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=91.60 E-value=0.014 Score=50.08 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+++.++|.+++||.+||.+|+ ..|||++.|+|+|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 357788899999999999999999 89999999999975
No 87
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=90.37 E-value=0.02 Score=47.93 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.+.++.+|+.||.+++ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 456777789999999999999999 88999999999974
No 88
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=90.10 E-value=0.019 Score=49.77 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+...++|.++.||+++|.+|+ +.|+++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 446677899999999999999998 78999999999976
No 89
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.96 E-value=1.4 Score=37.38 Aligned_cols=68 Identities=28% Similarity=0.276 Sum_probs=52.1
Q ss_pred EEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEe----CC--eecCCchhhcccccc--CCCEEEEeee
Q 004794 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (730)
Q Consensus 23 VKtldGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF----~G--KvLkDdkTLsDYGIe--dGSTLhLVlR 90 (730)
|+.+||...+++|+++.|+.+|=++|+++.++.- +-.=|.| +| .-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 6788999999999999999999999999999864 3446777 22 357888999999777 3445555443
No 90
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=89.76 E-value=0.031 Score=48.36 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=32.9
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
.++.+.++|.+++||++||..|+ ..|+|+++|+|||
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 46677789999999999999999 8999999999997
No 91
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=89.26 E-value=0.026 Score=47.27 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.++++|+.+|.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 456777899999999999999999 89999999999863
No 92
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=89.09 E-value=2.2 Score=38.06 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=51.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCchhhcc----ccccCCCEEEEe
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSA----YHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF~GK-----vLkDdkTLsD----YGIedGSTLhLV 88 (730)
|+|++.. ++..+.+.+.++.+..+|+++|.+++++.. ....|-|... .|..+.-|.+ |......+|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4666666 678899999999999999999999999865 5677878653 2344444444 445556777776
Q ss_pred ee
Q 004794 89 VR 90 (730)
Q Consensus 89 lR 90 (730)
++
T Consensus 80 v~ 81 (82)
T cd06407 80 VH 81 (82)
T ss_pred ee
Confidence 64
No 93
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.51 E-value=2.4 Score=35.90 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=43.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGI----PpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
...++++...||.+|++++..++.- ......+..+|+..+ .++-|++|+.|.++-..
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCC
Confidence 4567777789999999999987642 234556778888876 45679999999998544
No 94
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=88.40 E-value=0.034 Score=47.12 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCC--CcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGI--PpdqQRLIfA 142 (730)
..|+.+.+.+.+++||..||..|+ .+|+ ++++|+|+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 456778899999999999999999 8899 9999999974
No 95
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=88.37 E-value=0.73 Score=40.49 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.3
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCCeecCCchhhccc-cccCCCEEEEeee
Q 004794 35 VDKQVPVPALKEQIASVTG-VLSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (730)
Q Consensus 35 VdpsdTV~dLKekIaektG-IPpeqQRLIF~GKvLkDdkTLsDY-GIedGSTLhLVlR 90 (730)
|.++++|.+||+.+..... ..-....|.++|+.|+|...|+++ +++++++|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5688999999999988754 333556889999999999999988 6899999999854
No 96
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=87.49 E-value=2.8 Score=36.37 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=46.7
Q ss_pred cEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCCchhhccccccCCCEEEE
Q 004794 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtld------G-Kt~tLeVdpsdTV~dLKekIaektG-IPp--eqQRLIF~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
+|+|+|+... | +...+++....||.+|++.+..++. +.. ....+..+++... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4788998873 3 4566788888999999999977651 111 1123556777654 3556889999988
Q ss_pred eee
Q 004794 88 VVR 90 (730)
Q Consensus 88 VlR 90 (730)
+-.
T Consensus 76 ~Pp 78 (82)
T PLN02799 76 IPP 78 (82)
T ss_pred eCC
Confidence 743
No 97
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=87.41 E-value=3.3 Score=37.31 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=38.4
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004794 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (730)
Q Consensus 20 qItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK 66 (730)
.|+|.+- + ++.|+|.+..+..+|+++|.++.++++++.+|.|+..
T Consensus 4 vvKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 3455442 2 8899999999999999999999999999999999864
No 98
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=86.85 E-value=1.1 Score=49.86 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc--hhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd--kTLsDYGIedGSTLhLVlRl 91 (730)
..+++.+.|..+.....|+..++..++++.+..-|+|+.++|.++ ..|..||+++++++.+-.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 668889999999999999999999999999999999999998655 78999999999998775544
No 99
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=86.46 E-value=0.045 Score=45.37 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=33.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+...+.+.++++|..||.+++ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456778899999999999999999 88999999999973
No 100
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.79 E-value=4.5 Score=33.85 Aligned_cols=62 Identities=6% Similarity=0.236 Sum_probs=43.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
|+|+| +|+.+.+ + ..||.+|.+.+ ++.++...+.++++.+. .....++-+++|+.|-++--.
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 44444 6777776 3 45898888765 56666666778888876 445667789999999887544
No 101
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=85.75 E-value=3.1 Score=35.62 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=40.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK 66 (730)
++|+++. ++..+.+.+....|..+|+.+|..++++.....+|.|...
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 5677777 6788899999999999999999999998877888888753
No 102
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.57 E-value=6.3 Score=38.37 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC--C----eecCCchhhcccccc-CCCEEEEe
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF~--G----KvLkDdkTLsDYGIe-dGSTLhLV 88 (730)
..+.|.|..++|.+..+.++.++|+.+|.+.|+.+.|+... ..-|.+. + ..|+..++|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 35788999999999999999999999999999999999542 2234432 1 245666777776654 33455555
Q ss_pred eec
Q 004794 89 VRQ 91 (730)
Q Consensus 89 lRl 91 (730)
+|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 443
No 103
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=85.56 E-value=0.09 Score=45.62 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI 139 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRL 139 (730)
..|+.+.+.|.++.||.+||..|+ +.|+|+++|||
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL 45 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRL 45 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 456777889999999999999998 78999999999
No 104
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=85.23 E-value=0.094 Score=43.54 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.1
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+.+.++.+|++||.+++ ..|+|++.|+|+|.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 5666788999999999999999 89999999999964
No 105
>PRK06437 hypothetical protein; Provisional
Probab=85.22 E-value=5.3 Score=34.15 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+++...++++...||.+|-++ .+++++...+..+|+.+. .++-|++|+.|.++--
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 456678888888999887755 478888888899999987 6778889999988754
No 106
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.99 E-value=6.6 Score=33.60 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=45.8
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+|+|++... .+...++++...||.+|.+++ +++.+...+..+|+.+. .++-|++|+.|.++--
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 356666332 235677888889999988766 66777777888998884 3667899999988753
No 107
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=84.84 E-value=4 Score=37.38 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C-eecC-CchhhccccccCCCEEEEeeecCCC
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G-KVLK-DDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~----G-KvLk-DdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
..++..+...+||..+++.+.+.+.| .++-||--. + ..|. .+.||.|.+|.+|-+|.|=.|...+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 45777889999999999999999999 677887532 2 2464 4579999999999999888876553
No 108
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=83.44 E-value=0.35 Score=52.67 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCCc
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDD 71 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVd---p--sdTV~dLKekIae----------ktGIPpeqQR-----LIF~GKvLkDd 71 (730)
.......|.|++|.+-.-.+.|.+. + +.+|.+||..++. +.++|.+..+ |.|+-|.+-|.
T Consensus 72 aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ 151 (309)
T PF12754_consen 72 APGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCc
Confidence 4445566899999886655554332 3 5889999999999 8899998888 99999999999
Q ss_pred hhhccccc
Q 004794 72 QLLSAYHV 79 (730)
Q Consensus 72 kTLsDYGI 79 (730)
++|.+..-
T Consensus 152 ktl~e~l~ 159 (309)
T PF12754_consen 152 KTLAEVLA 159 (309)
T ss_dssp --------
T ss_pred CcHHHHHh
Confidence 99988743
No 109
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=82.76 E-value=3.2 Score=37.78 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.5
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEeC
Q 004794 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLICR 64 (730)
Q Consensus 20 qItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp---eqQRLIF~ 64 (730)
.+++|...|+.+.+.+.+++.+.+|++.|.+++|+.. ....|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 4678888999999999999999999999999999887 46677775
No 110
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=82.70 E-value=9 Score=34.50 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=49.1
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+..+.+|+|+| +|+.+.+ +...||.+|-+. .++++...-+.++|..+ ......++-+++||.|.++--.
T Consensus 12 ~~~~~~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 12 EGAAMVLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred cCCCCceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEEEe
Confidence 334445566665 6676554 567788877664 46777777788999888 3445677789999999987644
No 111
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=82.10 E-value=0.16 Score=44.90 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|++++++..||..+. +.|++++++||+|.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~ 57 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD 57 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 457778899999999999999998 99999999999986
No 112
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=80.80 E-value=0.18 Score=44.57 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=23.3
Q ss_pred cCCchhccccccc-C--CCCC-cchhHHHHH
Q 004794 116 PSVVIETFNLPDR-G--DGVP-SEISQIVSA 142 (730)
Q Consensus 116 pSdTIe~VK~~Iq-g--EGIP-pdqQRLIfA 142 (730)
.++||+.||.+|+ + +|++ +++|||||+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 4789999999999 5 6785 999999985
No 113
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=79.64 E-value=0.089 Score=43.55 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=33.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.++.+|..||..|. ..|+|++.|+|+|.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 356778899999999999999999 88999999999874
No 114
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=79.59 E-value=4.9 Score=34.10 Aligned_cols=56 Identities=14% Similarity=0.377 Sum_probs=40.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|+|+| +|+. ++++...|+.+||+++..... .+||+|-..+++ +-+++|+.|.|+.|
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDAD------IVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 45555 4454 567778899999998876433 679999877765 55677899988764
No 115
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=79.57 E-value=0.16 Score=42.90 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=29.3
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..+.++++.||..||.+|+ ..|+++++|+|+|.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 3688999999999999998 88999999999763
No 116
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=78.46 E-value=6.4 Score=34.56 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHh---CCCCCCeEEE-eCCeecCCchhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVT---GVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaekt---GIPpeqQRLI-F~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+|+...++.+.+..+--+.++-.+.. +-|++...|- -.|.+|+-++.+.|||+.++.+|.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 67888888888888777776665554 4677766665 34788999999999999999999998874
No 117
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=77.41 E-value=16 Score=31.53 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=40.9
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 30 TYTLRVDKQ-VPVPALKEQIASVTG-VL--SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 30 t~tLeVdps-dTV~dLKekIaektG-IP--peqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
...+++... .||.+|++.+.+++. +- ....++..+++.+.+ +.-|++|+.|.++-..
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPV 77 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCC
Confidence 356788766 899999999988864 11 123456677777664 5678999999887543
No 118
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=77.21 E-value=12 Score=32.71 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=41.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----C------CCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGV-----L------SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGI-----P------peqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
....+++. ..||.+|++.+.+++.- - -...++..+|+..+++.. +-|++|+.|.++-..
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppv 85 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPV 85 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCC
Confidence 34667776 89999999999887641 1 123566677877654432 678999999987543
No 119
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=77.10 E-value=11 Score=34.52 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=38.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK 66 (730)
.|+|+|.. .+..+.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46777765 67899999999999999999999999985 5566666654
No 120
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.77 E-value=0.28 Score=54.74 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCC---CCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEG---IPpdqQRLIfA 142 (730)
..++.+.+.|.+++||.+||.+|+ ..| +++++|+|||.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~ 49 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS 49 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence 567788899999999999999998 666 99999999987
No 121
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=76.69 E-value=8.7 Score=32.85 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.6
Q ss_pred cEEEEEEecCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004794 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 18 tMqItVKtldGKt~t-LeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (730)
+++|+++.- +..+. +.+....+..+|+.+|.++++.+....+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467888774 45555 899999999999999999999998888999875
No 122
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=75.69 E-value=13 Score=33.95 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=49.2
Q ss_pred EEEEEecCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCchhhccc-----cccCCC
Q 004794 20 EIKIKTLDSQTYTLRVD-----KQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (730)
Q Consensus 20 qItVKtldGKt~tLeVd-----psdTV~dLKekIaektGIPp-eqQRLIF~GK-----vLkDdkTLsDY-----GIedGS 83 (730)
.|+|+. ++....|.+. ++.+..+|+++|.+.+++++ ....|.|... .|.++.-|.++ .-....
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 466766 5667777776 47999999999999999988 5667788753 34444444332 333577
Q ss_pred EEEEeeec
Q 004794 84 TLHMVVRQ 91 (730)
Q Consensus 84 TLhLVlRl 91 (730)
+|.|.+..
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 88777654
No 123
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=75.47 E-value=0.36 Score=43.04 Aligned_cols=38 Identities=0% Similarity=-0.115 Sum_probs=28.2
Q ss_pred CCCCC--cccccccCCchhccccccc-C-C-CCCcchhHHHHH
Q 004794 105 GTSRS--HGSHVAPSVVIETFNLPDR-G-D-GVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrt--itl~V~pSdTIe~VK~~Iq-g-E-GIPpdqQRLIfA 142 (730)
..++. +.+++.+++||..+|.+|. . . ..++++|||||+
T Consensus 9 ~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 9 PNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 33444 4455689999999999998 2 2 355799999985
No 124
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=75.06 E-value=6.5 Score=36.07 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=45.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+...++-..++..||+.++.+.++.-+.-.+...+..|+++++|-+-+|+-..++.+.+..
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 34567788899999999999999999999999999988999999999999988888887754
No 125
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=75.02 E-value=13 Score=42.66 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=57.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCC----CC--CCeEEE-eCCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV----LS--EQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGI----Pp--eqQRLI-F~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+|+|... .+.+++-+..+..|.+|-..|-+..+- +. ..-+|. .+|..|+.+++|.+.+|.||++|+|.-+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 56788774 456778888899999999999888764 11 223443 45789999999999999999999998755
Q ss_pred CCC
Q 004794 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 443
No 126
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=74.59 E-value=0.5 Score=44.28 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=31.4
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
...+.|.+++||+++|..|+ +.+++|++|+|++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 45688999999999999999 99999999999988
No 127
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=74.08 E-value=8.4 Score=37.30 Aligned_cols=61 Identities=25% Similarity=0.368 Sum_probs=44.1
Q ss_pred EEEE-EecC-CCCHHHHHHHHHHHh----CCCC------CCeEEEeCC-----------------eec---CCchhhccc
Q 004794 30 TYTL-RVDK-QVPVPALKEQIASVT----GVLS------EQQRLICRG-----------------KVL---KDDQLLSAY 77 (730)
Q Consensus 30 t~tL-eVdp-sdTV~dLKekIaekt----GIPp------eqQRLIF~G-----------------KvL---kDdkTLsDY 77 (730)
.+.+ .|+. +.||.+||+.+.+.. +++| +..+|++.- .+| +++++|.+|
T Consensus 16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~ 95 (122)
T PF10209_consen 16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL 95 (122)
T ss_pred eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence 3445 4886 899999999887754 4555 445665431 356 677899999
Q ss_pred cccCCCEEEEeee
Q 004794 78 HVEDGHTLHMVVR 90 (730)
Q Consensus 78 GIedGSTLhLVlR 90 (730)
||++...|-++.+
T Consensus 96 gv~nETEiSfF~~ 108 (122)
T PF10209_consen 96 GVENETEISFFNM 108 (122)
T ss_pred CCCccceeeeeCH
Confidence 9999999888765
No 128
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=73.74 E-value=5.7 Score=44.72 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEE--eCCeecCC-chhhccccccCCCEE
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLI--F~GKvLkD-dkTLsDYGIedGSTL 85 (730)
..+-.|.||..||+-+.+.++.+.||.+|+..|.....-.+ ..+-|+ |--|.|.| +.||++.||.+-..|
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 33456888888999999999999999999999998775433 355555 44688865 589999999876544
No 129
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=73.36 E-value=11 Score=31.99 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=37.0
Q ss_pred EEEEEecCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004794 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 20 qItVKtldGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~G 65 (730)
+|+++. +|..+.+.+. ...+..+|+.+|.+++++.....+|.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 566666 3677888888 89999999999999999877677777775
No 130
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=72.46 E-value=17 Score=30.66 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=40.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+|+.+.+ ....||.+|-+. .+++++..-+.++++.+..+.- ..+ +++|+.|.++--.
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~V 62 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAV 62 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeec
Confidence 6676655 456787776654 5788888899999998754432 246 9999999987644
No 131
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=69.66 E-value=34 Score=28.85 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=42.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
|+|+| +|+.+.+ ....||.+|.+.+ ++......+-.+++.+.. ....++-|++|+.|.++--.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEc
Confidence 44554 5676554 5667898888654 455566778888988742 23455568999999887544
No 132
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=69.02 E-value=18 Score=30.29 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGI--PpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
...+.+....||.+|.+++..++.- ..+..++..+|+.+.+ ...++-+++|+.|.++--..
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCC
Confidence 5667888999999999999887631 2366788899998888 37788899999999976443
No 133
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=68.54 E-value=30 Score=28.70 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+... ...++-+++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHAL 63 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEe
Confidence 66755 45567888877654 57888888888999877544 3445668999999887543
No 134
>smart00455 RBD Raf-like Ras-binding domain.
Probab=67.70 E-value=14 Score=32.04 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.4
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (730)
+.|-..+|+...+.+.+..||.++-+++.++.|+.++...|++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678899999999999999999999999999999998888855
No 135
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=67.57 E-value=0.44 Score=38.06 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+...+.|.++.+|+.||.+++ ..|+|++.|+|+|.
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 345678899999999999999 89999999999864
No 136
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=65.33 E-value=13 Score=39.16 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEecCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC----e--ecCCchhhccccccC
Q 004794 14 SSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG----K--VLKDDQLLSAYHVED 81 (730)
Q Consensus 14 ~s~~tMqItVKtldG--Kt~t----LeVdpsdTV~dLKekIaektGIPpeqQRLIF~G----K--vLkDdkTLsDYGIed 81 (730)
.....+-|++|..|- +++. +-|+.+++|.+|-..|.++.|+|++..-++|.- + .|+...+|..+.|.+
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~ 143 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQD 143 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--T
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCC
Confidence 345579999998863 3332 578899999999999999999999877666653 2 467889999999999
Q ss_pred CCEEEEeeecC
Q 004794 82 GHTLHMVVRQP 92 (730)
Q Consensus 82 GSTLhLVlRlp 92 (730)
|+.|.+=....
T Consensus 144 GdIi~fQ~~~~ 154 (249)
T PF12436_consen 144 GDIICFQRAPS 154 (249)
T ss_dssp TEEEEEEE--G
T ss_pred CCEEEEEeccc
Confidence 99998876543
No 137
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=63.29 E-value=43 Score=30.59 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=50.3
Q ss_pred CCcEEEEEEec-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEeCCe--ecCCchhhcccc-----ccC
Q 004794 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLSE----QQRLICRGK--VLKDDQLLSAYH-----VED 81 (730)
Q Consensus 16 ~~tMqItVKtl-dGKt~tLeVdpsdTV~dLKekIaek--tGIPpe----qQRLIF~GK--vLkDdkTLsDYG-----Ied 81 (730)
...+.|.|... +...++|.|+.+.|+.+|.+++..+ ...... +-.|--.|+ -|..+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 45688999887 4567899999999999999988776 222222 456666675 466778888874 567
Q ss_pred CCEEEEeee
Q 004794 82 GHTLHMVVR 90 (730)
Q Consensus 82 GSTLhLVlR 90 (730)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 777777764
No 138
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.09 E-value=11 Score=41.93 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=44.9
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---Ceec-----CCchhhccccccCCCEEEEe
Q 004794 34 RVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVL-----KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 34 eVdpsdTV~dLKekIaektGIPpeqQRLIF~---GKvL-----kDdkTLsDYGIedGSTLhLV 88 (730)
-|+-.-||.+||+++..+.|+.+.++||+|- ||.- .-++.|-.|+|++|+.+.+-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4556789999999999999999999999874 4432 33578999999999988664
No 139
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=62.40 E-value=41 Score=31.31 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=52.3
Q ss_pred CcEEEEEEecC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCe--ecCCchhhcccc-----ccC
Q 004794 17 TTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGK--VLKDDQLLSAYH-----VED 81 (730)
Q Consensus 17 ~tMqItVKtld-GKt~tLeVdpsdTV~dLKekIaekt----G--IPpe-qQRLIF~GK--vLkDdkTLsDYG-----Ied 81 (730)
..+.|.|...+ ...+++.+++++++.+|.+.+..+. + .+++ +-.|--.|+ -|..+..|.+|. ++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 45777777654 3568999999999999999887762 1 2222 456666675 356667777663 677
Q ss_pred CCEEEEeeec
Q 004794 82 GHTLHMVVRQ 91 (730)
Q Consensus 82 GSTLhLVlRl 91 (730)
|..+||++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8888888764
No 140
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=61.85 E-value=19 Score=31.63 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=40.1
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (730)
+.|-..+|+.-.+.|.+.+||.++-+++.++.++.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778999999999999999999999999999999888777664
No 141
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=60.89 E-value=32 Score=28.77 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=42.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+|+.+. ++...||.+|.+++ +++.+...+.++|+.+..+ ...++-|++|+.|.++--.
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 556554 45678999888766 4677888888999887543 3445669999999887544
No 142
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=59.90 E-value=1.1 Score=42.64 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=26.6
Q ss_pred cccccCCchhccccccc------CCCCC--cchhHHHHH
Q 004794 112 SHVAPSVVIETFNLPDR------GDGVP--SEISQIVSA 142 (730)
Q Consensus 112 l~V~pSdTIe~VK~~Iq------gEGIP--pdqQRLIfA 142 (730)
..+.+++||.++|.+|+ ++|+| +++|+|||+
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 56789999999999997 35677 999999986
No 143
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=59.87 E-value=59 Score=28.17 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=40.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE--eCC----eecCCc-hhhcc--ccccCCCEEEEeee
Q 004794 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI--CRG----KVLKDD-QLLSA--YHVEDGHTLHMVVR 90 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIP--peqQRLI--F~G----KvLkDd-kTLsD--YGIedGSTLhLVlR 90 (730)
+...+|.|..++|..+|-+.+.+++++. ++...|+ +.+ +.|.|+ +.|.- ..........+++|
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr 85 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLR 85 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEe
Confidence 5667899999999999999999999987 4444554 222 456554 44431 22233444455544
No 144
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=59.27 E-value=22 Score=41.87 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=48.1
Q ss_pred CcEEEEEEecC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEE--eC--Ce-ecCCc----------
Q 004794 17 TTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLI--CR--GK-VLKDD---------- 71 (730)
Q Consensus 17 ~tMqItVKtld--GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLI--F~--GK-vLkDd---------- 71 (730)
.+|.|+|-..+ ...+.+.|-..|||.++|+||-+.. +.| +++.-|. .. |+ .|+|.
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 45777765543 2458889999999999999997753 222 2334343 22 22 45442
Q ss_pred ---hhhccccccCCCEEEEeeecC
Q 004794 72 ---QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 72 ---kTLsDYGIedGSTLhLVlRlp 92 (730)
.||+.|+|.||++|-|+.+..
T Consensus 268 krLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 268 KRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EE--BHHHHT--TTEEEEEEES--
T ss_pred eEeccHhhcCCCCCceEEEeeccc
Confidence 368999999999999999864
No 145
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=57.84 E-value=55 Score=30.01 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=43.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCchhhcc
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA 76 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-------GKvLkDdkTLsD 76 (730)
.-|+|-..||....|.|+..+|+.++-+++..+.++..+.-.-+|. .+.|+|+..|-+
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 3467777899999999999999999999999999876644332222 356788866544
No 146
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=56.96 E-value=36 Score=30.85 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=31.0
Q ss_pred EEEEEEecCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdp--sdTV~dLKekIaektGIP 55 (730)
++|++.. +|.++.+.+++ +.+..+|+++|...+++.
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3566666 67889999998 779999999999999998
No 147
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=55.74 E-value=71 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=38.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
+|+.+. +....||.+|.+.+. +. ....+.++|+.+.... ..+.-+++|+.|.++--..
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVA 63 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeecc
Confidence 566554 556788998887663 33 3456778888764322 3344589999999886443
No 148
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=55.09 E-value=54 Score=27.37 Aligned_cols=59 Identities=12% Similarity=0.293 Sum_probs=41.6
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 26 ldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
++|+.+.+ ....||.+|.+++ +++++...+.++|+.+..+ ...++-|++|+.|.++--.
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 36666554 5567899888765 5667777788899877432 3445679999999887644
No 149
>PRK07440 hypothetical protein; Provisional
Probab=52.97 E-value=98 Score=26.76 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=44.8
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.|+|+| +|+. +++....||.+|-+ ..+++++..-+.++|+.+.- ....++-+++|+.|.++--.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEe
Confidence 466665 5675 44566788887765 44677777788899987743 24556778999999887543
No 150
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.44 E-value=42 Score=31.10 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.8
Q ss_pred EEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004794 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (730)
Q Consensus 23 VKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF 63 (730)
++..+|.+..+.|+.+.+..+|+.++.+.+++... ..|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 67888999999999999999999999999998875 55544
No 151
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=51.22 E-value=72 Score=27.36 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=32.6
Q ss_pred EEEEEecCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEE
Q 004794 20 EIKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRL 61 (730)
Q Consensus 20 qItVKtldGK----t~tLeVdpsdTV~dLKekIaektGI--PpeqQRL 61 (730)
-|+|-..++. ..+|.|...+|+.+|-+.+.+++++ .+....|
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 3455555555 7789999999999999999999998 3345566
No 152
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=51.10 E-value=1.8 Score=34.29 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
..|+.+.+.+.++++|..+|.+|. ..|+++++|+|.+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 457778899999999999999999 8899999999554
No 153
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=49.35 E-value=66 Score=27.93 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=38.6
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCc
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDD 71 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G--KvLkDd 71 (730)
+.|-..+++...+.|.+.+||.++-.++.++.++.++...+...| |.|..+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 556678899999999999999999999999999999887766544 445433
No 154
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=48.62 E-value=1e+02 Score=26.25 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=40.0
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdps-dTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+|+.+.+ ... .||.+|-+ ..+++++..-+.++++.+.-+ ...++-|++|+.|.++.-.
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 6776654 443 57776664 456777777788999887433 3556678999999887643
No 155
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=46.49 E-value=60 Score=29.66 Aligned_cols=57 Identities=35% Similarity=0.492 Sum_probs=36.4
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCc---hhh--ccccccCCCEEEEeeec
Q 004794 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL--SAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIF~-GK------vLkDd---kTL--sDYGIedGSTLhLVlRl 91 (730)
++++...||.+|-+.|.+++ +..+-+|+.. |+ +|-++ ..| .+|-+++|+.|.++-..
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCC
Confidence 34445679999999998876 3344455543 32 23233 234 46889999999987543
No 156
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=45.52 E-value=37 Score=41.31 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvL 68 (730)
+...+.+-++++.|+..|++.|...+|||.+.|-|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 466788899999999999999999999999999999997643
No 157
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=44.15 E-value=59 Score=28.98 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=40.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEeC------CeecCCchhhccccccCCCEEEEeeec
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLICR------GKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-IPpeqQRLIF~------GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
++|-+=.+++.||.+|+.+|.+++. +.|....+... |.-|+.+-.+++. +..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4555558899999999999999885 56655433321 3344444445544 3467888888764
No 158
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=43.93 E-value=10 Score=41.84 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.6
Q ss_pred ecCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhh
Q 004794 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (730)
Q Consensus 25 tldGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTL 74 (730)
..+|.++.+.+. ....|..||.+|....+|++..|++.|.|..|+|...+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 446788887776 78889999999999999999999999999999998444
No 159
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=43.36 E-value=26 Score=32.90 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=23.2
Q ss_pred EEEeCCeecCCchhhccccccCC--CEEEEeeecCC
Q 004794 60 RLICRGKVLKDDQLLSAYHVEDG--HTLHMVVRQPV 93 (730)
Q Consensus 60 RLIF~GKvLkDdkTLsDYGIedG--STLhLVlRlpg 93 (730)
.|-|.||.|..+++|+|| |... .+|.+-+...+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKRG 37 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccCC
Confidence 478999999999999999 4333 44444444444
No 160
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=42.50 E-value=2e+02 Score=25.04 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=32.0
Q ss_pred EEecC-CCCHHHHHHHHHHHhCC-----CCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 33 LRVDK-QVPVPALKEQIASVTGV-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 33 LeVdp-sdTV~dLKekIaektGI-----PpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
++++. ..||.+|++.+.+++.- .....++..+++... .++-|++|+.|-++-.
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PP 77 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPP 77 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCC
Confidence 44443 47999999999887621 112223334443322 2456899999988743
No 161
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=41.96 E-value=79 Score=32.65 Aligned_cols=104 Identities=22% Similarity=0.175 Sum_probs=49.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EeCCe---ecCCchhhccccccCCCEEEEeeecCCC--CC-C
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRL--ICRGK---VLKDDQLLSAYHVEDGHTLHMVVRQPVP--SS-S 97 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpe---qQRL--IF~GK---vLkDdkTLsDYGIedGSTLhLVlRlpgg--p~-s 97 (730)
+.+.+-|..+.||.+|.+++..+.+++.+ ..|| ++++| .+..+..|..+ .+..++.+-.-.... .. .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35778899999999999999999998765 4454 35676 45667777665 333333221110000 00 0
Q ss_pred --CCCCCCC---------CCCCCcccccccCCchhccccccc-CCCCCc
Q 004794 98 --DGTHNLP---------GTSRSHGSHVAPSVVIETFNLPDR-GDGVPS 134 (730)
Q Consensus 98 --s~~qI~v---------~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPp 134 (730)
...-+.+ .-|-..-..|.++.++..+|..|+ +.|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 0000111 112222367889999999999888 777655
No 162
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.03 E-value=57 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (730)
-++.|.+.+..+..+|..+|.++...+++.-+|.|+-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 3566788999999999999999999999999999974
No 163
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=40.77 E-value=2.5 Score=34.13 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=29.6
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
+++.....+.++.+|+.||..|. ..|+|++.|+|+|
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 35555677888899999999999 7899999998854
No 164
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=40.67 E-value=89 Score=34.94 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=46.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
+|+.+. +....||.+|-++ .+++++...+.++|+.+. .....++-|++|+.|.++--..+++
T Consensus 6 NGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 6 NGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred CCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCCC
Confidence 667544 4567788777654 578888889999999884 3345677799999999998776654
No 165
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.04 E-value=11 Score=43.44 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=56.6
Q ss_pred CcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 17 TTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 ~tMqItVKtldGK--t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+++.|+.-...+. ...++.....|=.+|..+|++++||+-...+.|.+||+|.-.+||.+-|++....+.+++.
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 3455554443322 1234566677888999999999999999999999999999999999999987776665554
No 166
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=37.70 E-value=86 Score=28.72 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=42.2
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCCchhhccc
Q 004794 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY 77 (730)
Q Consensus 20 qItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK-----vLkDdkTLsDY 77 (730)
+.+||. +|.+..+.+...-+...|++||+..+.+|....-|.|-.. .|.++.-|.++
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 467766 5777778788888999999999999999988777777432 24455555544
No 167
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=1.4e+02 Score=28.89 Aligned_cols=52 Identities=2% Similarity=0.182 Sum_probs=41.5
Q ss_pred CcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004794 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (730)
Q Consensus 17 ~tMqItVKtldG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvL 68 (730)
..+.|.+|..++ |.-.+.|++++|++.+-..|.+..+++..++-++|=..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 456677776543 4556789999999999999999999999998887766544
No 168
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=1.4e+02 Score=32.91 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---chhhccccccCCCEEEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTLhL 87 (730)
....|.||..||+++...+....|+..|...|..+.+...+-..|. |--+.+.+ .++|..+++..-++|.|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4578889999999999999999999999999999988665443333 44455532 27888888877776654
No 169
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=34.69 E-value=48 Score=29.93 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred EEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCCchhhccccccCCCEEEEe
Q 004794 33 LRVD-KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 33 LeVd-psdTV~dLKekIae-ktGIPpe----qQRLIF~GKv----LkDdkTLsDYGIedGSTLhLV 88 (730)
+.++ ..+|+.+|-++|-+ +.|+... .-+++|.... -..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 46899999988744 5564432 2345554322 223589999999999988764
No 170
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=34.31 E-value=50 Score=37.19 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=52.1
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEEeCC---eec--CCchhhccccccCCCE
Q 004794 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHT 84 (730)
Q Consensus 20 qItVKtldGKt~tLeVdpsdTV~dLKekIaekt-GIPpeqQRLIF~G---KvL--kDdkTLsDYGIedGST 84 (730)
.|.||+.||+.....+.++++|..|-.-++... |.+-+..+|+++= |.| +.+.||.++||.+-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 499999999887777788999988888777665 4566778999886 655 3468999999998765
No 171
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=34.15 E-value=69 Score=32.33 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=35.4
Q ss_pred cEEEEEEecCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccc
Q 004794 18 TIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDY 77 (730)
.|.++|+. -.+.++++. .+.+..+++...+.+.++-+ +..|+-++...|+.||
T Consensus 67 ~veL~V~v---Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTVKV---GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEE---eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 35666665 235567776 66677777666665533322 3469999999999998
No 172
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=33.86 E-value=1.4e+02 Score=34.87 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCC---chhhccccccCCCEEEEeee
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL--IF~GKvLkD---dkTLsDYGIedGSTLhLVlR 90 (730)
....+|.|+..+|..|+-.+..++-+..+|+.|...-++.....-| .|--|+..| +++|.++.+.+...|.|+-+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 3558899999999999988888888899999999887776665555 466777643 38999999999888877766
Q ss_pred cCC
Q 004794 91 QPV 93 (730)
Q Consensus 91 lpg 93 (730)
...
T Consensus 392 ~r~ 394 (506)
T KOG2507|consen 392 KRA 394 (506)
T ss_pred CCc
Confidence 544
No 173
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=33.57 E-value=11 Score=43.65 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.4
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHHh
Q 004794 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 110 itl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAv 143 (730)
....|..+.+|..||.+|. .-++++|+++|||+-
T Consensus 27 ~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaG 61 (493)
T KOG0010|consen 27 YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAG 61 (493)
T ss_pred eeEecccchHHHHHHHHHHHhcCCChhHeeeeecC
Confidence 4578899999999999999 789999999999973
No 174
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=33.55 E-value=1.4e+02 Score=27.09 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=41.6
Q ss_pred EEEEecCC-cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCchhhccccccCCCEEEEeeec
Q 004794 21 IKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 21 ItVKtldG-Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
++|+..+. +.+-|-+ .++.+|+.|..+++.++.+..+|+. .|-.++|+.-+.. + +..|+.|++..
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~~ 72 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLEK 72 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEES
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEECC
Confidence 45555442 3344444 5899999999999999977777765 5888877644433 2 34556565543
No 175
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.28 E-value=3.2e+02 Score=25.86 Aligned_cols=75 Identities=25% Similarity=0.300 Sum_probs=46.6
Q ss_pred CcEEEEEEecCCc--------EEE--EEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-C--Cchhh--
Q 004794 17 TTIEIKIKTLDSQ--------TYT--LRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-K--DDQLL-- 74 (730)
Q Consensus 17 ~tMqItVKtldGK--------t~t--LeVd-psdTV~dLKekIaektGIPpeqQRLIF~GK------vL-k--DdkTL-- 74 (730)
+.|.|+|+++.|- .+. ++|. ...||.+|-.-|..++--.+++ -++..|. +| . |-..|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 4578888887652 222 3332 4578999988888866433333 4455553 23 2 22344
Q ss_pred ccccccCCCEEEEeeecC
Q 004794 75 SAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 75 sDYGIedGSTLhLVlRlp 92 (730)
.+|.+++|+.|.++-.+-
T Consensus 82 edy~ledgD~ivfiSTlH 99 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLH 99 (101)
T ss_pred cccCcccCCEEEEEEecc
Confidence 579999999998876543
No 176
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=31.66 E-value=1.5e+02 Score=27.82 Aligned_cols=61 Identities=23% Similarity=0.435 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee---------cCCchhhccccccCCCEEEE
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV---------LKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GKv---------LkDdkTLsDYGIedGSTLhL 87 (730)
+..++.|.|+++.|=.++|+.|++.+++.+.... |+..|+. +..+..-+..-+..|..|.+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 3478999999999999999999999999988775 4555541 33344444444555555443
No 177
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=31.61 E-value=1.1e+02 Score=36.53 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=56.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--eC----CeecCCch----hhccccccCCCEEE
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--CR----GKVLKDDQ----LLSAYHVEDGHTLH 86 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLI--F~----GKvLkDdk----TLsDYGIedGSTLh 86 (730)
.+-|+|-+-||....|.|+..+|+.++-+.+.+|..+--+ ...|+ |. -+.++|+. .|.++.+..+..|.
T Consensus 188 klvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~l 267 (622)
T KOG3751|consen 188 KLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKLL 267 (622)
T ss_pred ceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCceeE
Confidence 3556666678999999999999999999999999876543 33443 22 25678875 46778888889998
Q ss_pred EeeecCC
Q 004794 87 MVVRQPV 93 (730)
Q Consensus 87 LVlRlpg 93 (730)
+..+..+
T Consensus 268 F~k~~~K 274 (622)
T KOG3751|consen 268 FRKNPAK 274 (622)
T ss_pred Eeecchh
Confidence 8776544
No 178
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.23 E-value=1.5e+02 Score=27.15 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=34.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004794 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GKv 67 (730)
...+.|.|++..|=.++|+.|+..+++.+...+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 468999999999999999999999999998775 4566654
No 179
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=31.18 E-value=80 Score=31.79 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=35.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccc
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDY 77 (730)
|.++|+. -.+.+++...+.+.++++...+.+-++-+ +..||-+++..|+.||
T Consensus 67 veL~V~V---GrI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 67 VELRVQV---GRIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEE---eEEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 5666665 23456666667777777766666543322 4568899999999998
No 180
>PRK01777 hypothetical protein; Validated
Probab=30.18 E-value=3e+02 Score=25.52 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=43.3
Q ss_pred CcEEEEEEecCC---cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCCchhhccccccCCCEEE
Q 004794 17 TTIEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtldG---Kt~tLeVdpsdTV~dLKekIaektGIPpe--q-----QRLIF~GKvLkDdkTLsDYGIedGSTLh 86 (730)
.+|+|.|....- +.+.+++....||.++-++. |++.+ + -.+...||..+- ++-+++|+.|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEE
Confidence 368888876432 23567888999998876654 55444 2 345556665543 55678999999
Q ss_pred Eeeec
Q 004794 87 MVVRQ 91 (730)
Q Consensus 87 LVlRl 91 (730)
++-.+
T Consensus 73 IyrPL 77 (95)
T PRK01777 73 IYRPL 77 (95)
T ss_pred EecCC
Confidence 88654
No 181
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=30.14 E-value=1.4e+02 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=31.4
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEeCC
Q 004794 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLICRG 65 (730)
Q Consensus 21 ItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp---eqQRLIF~G 65 (730)
|+|-..+|.+..++|....+-.++|.++-+|+|++. ..-..+..+
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 566677999999999999999999999999999887 323344445
No 182
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=28.41 E-value=76 Score=28.73 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=38.4
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCC-------CCeEEEeCCe-ecC------CchhhccccccCCCEEEEe
Q 004794 33 LRVDKQVPVPALKEQIASVTGVLS-------EQQRLICRGK-VLK------DDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPp-------eqQRLIF~GK-vLk------DdkTLsDYGIedGSTLhLV 88 (730)
|+|++++|+.+|-+.+.++..+-. ..-.|++.+- .|+ -+++|.+. +.+|..|.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 579999999999999998743322 3344555442 232 25789999 9999988873
No 183
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=27.81 E-value=1.1e+02 Score=28.23 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=36.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ 59 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQ 59 (730)
++|.|-..+|.++.++|..+++..++-+.+..+.++|.+-.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 46777778899999999999999999999999999987654
No 184
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=26.29 E-value=2.1e+02 Score=26.29 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=35.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRG 65 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF~G 65 (730)
++|++.. +|..+.+.+++..+.++|.+++.+.+....+ ...+.|..
T Consensus 1 i~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D 47 (83)
T cd06404 1 VRVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID 47 (83)
T ss_pred CeEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 3566666 6888889999999999999999999988654 34555543
No 185
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=26.26 E-value=2.7e+02 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCchhhccccccCCCEEEEe
Q 004794 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 32 tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
.+.|........+-+..++++.+++..--+|.+ |--+...++..+.-++.|+.|.|+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 367888888888888999999999988888766 667788889999889999998874
No 186
>PLN02560 enoyl-CoA reductase
Probab=26.10 E-value=10 Score=41.48 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=27.5
Q ss_pred ccccccCCchhccccccc-CCCC-CcchhHHHH
Q 004794 111 GSHVAPSVVIETFNLPDR-GDGV-PSEISQIVS 141 (730)
Q Consensus 111 tl~V~pSdTIe~VK~~Iq-gEGI-PpdqQRLIf 141 (730)
++++.++.||+++|.+|+ +.++ ++++|||++
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
Confidence 578899999999999999 6676 899999986
No 187
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=26.05 E-value=2e+02 Score=28.11 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=49.3
Q ss_pred CcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccc-c--ccCCCEEEEeee
Q 004794 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY-H--VEDGHTLHMVVR 90 (730)
Q Consensus 17 ~tMqItVKtld---GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDY-G--IedGSTLhLVlR 90 (730)
..|-|.|.... .|...+-|..++||.+|...|..+.++.+++.-|..++.++..+.++++. . -.++..|++...
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 34555554432 23333468999999999999999999999885555666566667777653 1 123556766653
No 188
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=25.91 E-value=2e+02 Score=25.88 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=39.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCeecCCchhhccccccCCCEEEEee
Q 004794 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
++.+.+.++...||+++-+ ..|+|..+-.++ .+|+...- +|-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 3567788889999977654 579999888766 46776543 47788999998864
No 189
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=25.68 E-value=3.2e+02 Score=27.48 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCCCcEEEEEEecCCcEEE---------------EEecCCCCHHHHHHHHHHHh------CCCCCCeEEEe-------
Q 004794 12 AESSETTIEIKIKTLDSQTYT---------------LRVDKQVPVPALKEQIASVT------GVLSEQQRLIC------- 63 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~t---------------LeVdpsdTV~dLKekIaekt------GIPpeqQRLIF------- 63 (730)
...++..+.|+.+. +|+.+. |--..++|+.+|-..|.+.. |.. -+..++|
T Consensus 21 ektCPlLlrVf~~~-~g~hH~~def~~g~vPs~elQiYtW~datL~ELtsLvkevnpeaR~kgt~-f~fa~Vf~d~~~~~ 98 (151)
T KOG3391|consen 21 EKTCPLLLRVFTQF-NGRHHVMDEFEDGNVPSSELQIYTWMDATLRELTSLVKEVNPEARKKGTS-FDFAVVFPDKKSPR 98 (151)
T ss_pred cccCcceeeeeeec-CCCCcchhhhhcCCCCchheeEeehhhhhHHHHHHHHHHcCHHHhccCce-EEEEEEeccCCCCC
Confidence 44455557777764 333322 22235688999988887732 100 1123333
Q ss_pred ----------CC-eecCCchhhccccccCCCEEEEeeecCCC
Q 004794 64 ----------RG-KVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 64 ----------~G-KvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
.| |..+|+++|..++++-|+.|.+.+..+..
T Consensus 99 y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~ 140 (151)
T KOG3391|consen 99 YIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPNR 140 (151)
T ss_pred ceeeeecccccCcccCCccchhhhCCccccceEEEEecCccc
Confidence 22 34578899999999999999999987653
No 190
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=25.66 E-value=4.8e+02 Score=24.84 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=48.0
Q ss_pred CCcEEEEEEecCC------cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCeecCCchhhcc----ccccCCCE
Q 004794 16 ETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKVLKDDQLLSA----YHVEDGHT 84 (730)
Q Consensus 16 ~~tMqItVKtldG------Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLIF~GKvLkDdkTLsD----YGIedGST 84 (730)
+..|-|.|..... +.-.+-|..++||.+|+..|..+..+.+++- -|+.++.....+.++++ |+- ++..
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGf 100 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGF 100 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCE
Confidence 3446666654321 1223458999999999999999999888764 45555555566666654 333 3557
Q ss_pred EEEeee
Q 004794 85 LHMVVR 90 (730)
Q Consensus 85 LhLVlR 90 (730)
|+|...
T Consensus 101 Lyl~Ys 106 (112)
T cd01611 101 LYMTYS 106 (112)
T ss_pred EEEEEe
Confidence 777664
No 191
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.36 E-value=1.5e+02 Score=31.37 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=33.0
Q ss_pred EEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004794 19 IEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (730)
Q Consensus 19 MqItVKtld---GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI 62 (730)
+.|+++-.. ...|.++++..+|-.+|-++|+++.++.|+..||.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 566666543 34799999999999999999999999999999886
No 192
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.95 E-value=1.1e+02 Score=27.74 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=35.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeecC
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVLK 69 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GKvLk 69 (730)
..+++.|++..|=.++|+.|+..+++.+...+ +++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 67999999999999999999999999997775 557777543
No 193
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=24.81 E-value=16 Score=40.70 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCCCCCCcccccccCCchhccccccc-CCC--CCcchhHHHHHh
Q 004794 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSAV 143 (730)
Q Consensus 103 ~v~tGrtitl~V~pSdTIe~VK~~Iq-gEG--IPpdqQRLIfAv 143 (730)
++..+.++++.+.++++|..+|.+|. -.| .|..+|.|||+.
T Consensus 6 KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G 49 (340)
T KOG0011|consen 6 KTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG 49 (340)
T ss_pred eeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc
Confidence 34567788899999999999999998 444 999999999974
No 194
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=24.47 E-value=1.6e+02 Score=26.27 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=22.4
Q ss_pred EEEEecCCcE-EEEEec-CCCCHHHHHHHHHHHhCC
Q 004794 21 IKIKTLDSQT-YTLRVD-KQVPVPALKEQIASVTGV 54 (730)
Q Consensus 21 ItVKtldGKt-~tLeVd-psdTV~dLKekIaektGI 54 (730)
|+-|+...+. ..|.++ ...+|.+||.+|.++.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 3445544443 446776 568999999999887765
No 195
>CHL00030 rpl23 ribosomal protein L23
Probab=23.16 E-value=1.9e+02 Score=26.87 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=32.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 004794 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GK 66 (730)
...|.|.|+.+.+=.++|+.|+..+++.+..-+ ++..||
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 478999999999999999999999999887664 445554
No 196
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=22.61 E-value=4.3e+02 Score=24.13 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=49.1
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCchhhccccccCCCEEEEeeecC
Q 004794 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
+.|........+-+-.++++++++..--+|.+ |--+...++-..+-++.|+.|.|+-|-+
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 57777777888888889999999987777765 6667888899999999999999987643
No 197
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=22.14 E-value=2.2e+02 Score=33.15 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=52.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeC----Cee--cCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICR----GKV--LKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaekt--GIPpeqQRLIF~----GKv--LkDdkTLsDYGIedGSTLhLVlR 90 (730)
|-+.++...| ...++|.++++...|-.+|-..+ +..+++.-+.-+ |.. +..++++.|.|+++|..|+|-..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 4566777554 46789999999999999887655 355666655533 222 45679999999999999999873
No 198
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.73 E-value=2.3e+02 Score=25.70 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCCchhhccccccCCCEEEEeee
Q 004794 38 QVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 38 sdTV~dLKekIaektGIPpeqQRLI--F~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
-.+..+|+.|..+++.++....+|+ -.|-.++|+.-+.. + ...|+.|++.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--L-p~nT~l~~l~ 71 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--C-CCCcEEEEEC
Confidence 3579999999999999976666555 45888877744433 2 3344445443
No 199
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=20.93 E-value=5.3e+02 Score=22.58 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=42.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|+|.+ +|+.+ +++...|+.+|-+ +.+++++..-+.++|..+..+ -..++-+++|+.|.++.-
T Consensus 3 m~i~~---ng~~~--e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 3 MTIQL---NGKEV--EIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRV 64 (68)
T ss_pred EEEEE---CCEEE--EcCCCCcHHHHHH----HhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEe
Confidence 44444 35654 4555589988765 456778888888999887543 235667888898887753
No 200
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.85 E-value=1.6e+02 Score=36.90 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=48.8
Q ss_pred CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCchhhcccc-c-cCCCEEEEe
Q 004794 27 DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYH-V-EDGHTLHMV 88 (730)
Q Consensus 27 dGKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYG-I-edGSTLhLV 88 (730)
.|+.++++.+. ..|+.+||..|..++|+-..+|.|+-. |..+..++.|+.|. . .+-.-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 36778887774 579999999999999999999987765 67888889999987 2 344556665
Done!