Query 004794
Match_columns 730
No_of_seqs 288 out of 1427
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 8.2E-23 2.8E-27 194.8 5.1 126 12-142 14-142 (172)
2 3rt3_B Ubiquitin-like protein 99.9 1.5E-22 5.1E-27 189.8 4.5 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 7.4E-21 2.5E-25 174.8 4.5 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 2.5E-18 8.6E-23 143.8 10.0 77 17-93 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.7 4.1E-18 1.4E-22 146.0 10.4 80 16-96 3-82 (90)
6 3dbh_I NEDD8; cell cycle, acti 99.7 5.2E-18 1.8E-22 143.7 10.2 82 13-94 7-88 (88)
7 4hcn_B Polyubiquitin, ubiquiti 99.7 3.5E-18 1.2E-22 150.0 9.2 82 13-94 17-98 (98)
8 3v6c_B Ubiquitin; structural g 99.7 1.3E-17 4.4E-22 143.9 10.5 81 12-92 11-91 (91)
9 3plu_A Ubiquitin-like modifier 99.7 9.7E-18 3.3E-22 149.1 9.6 76 14-89 17-92 (93)
10 1wy8_A NP95-like ring finger p 99.7 3.3E-17 1.1E-21 139.8 11.8 82 15-96 4-87 (89)
11 4fbj_B NEDD8; effector-HOST ta 99.7 1.2E-17 4.2E-22 143.9 9.1 77 19-95 1-77 (88)
12 1ttn_A DC-UBP, dendritic cell- 99.7 1.5E-17 5.1E-22 148.3 9.8 89 7-95 12-100 (106)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 3E-17 1E-21 139.3 10.9 80 15-94 4-83 (87)
14 1wx8_A Riken cDNA 4931431F19; 99.7 2.1E-17 7.1E-22 143.7 10.0 86 9-95 8-93 (96)
15 1ndd_A NEDD8, protein (ubiquit 99.7 2.8E-17 9.4E-22 134.6 9.5 76 19-94 1-76 (76)
16 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.5E-17 1.2E-21 137.3 9.9 78 17-94 2-79 (85)
17 1uh6_A Ubiquitin-like 5; beta- 99.7 2.4E-17 8.1E-22 148.2 9.4 82 8-89 18-99 (100)
18 3n3k_B Ubiquitin; hydrolase, p 99.7 2.1E-17 7.1E-22 138.9 8.3 79 17-95 2-80 (85)
19 2uyz_B Small ubiquitin-related 99.7 2.8E-17 9.6E-22 137.4 8.9 78 17-94 2-79 (79)
20 4eew_A Large proline-rich prot 99.7 3.7E-17 1.3E-21 139.6 9.6 76 14-90 13-88 (88)
21 2dzi_A Ubiquitin-like protein 99.7 4.9E-17 1.7E-21 135.5 10.1 79 14-92 3-81 (81)
22 1wyw_B Ubiquitin-like protein 99.7 3.6E-17 1.2E-21 143.7 9.5 82 13-94 16-97 (97)
23 2wyq_A HHR23A, UV excision rep 99.7 5.2E-17 1.8E-21 137.0 10.1 78 16-93 3-83 (85)
24 2hj8_A Interferon-induced 17 k 99.7 3.8E-17 1.3E-21 140.6 9.2 78 17-94 3-80 (88)
25 3a9j_A Ubiquitin; protein comp 99.7 6E-17 2E-21 132.6 9.9 76 19-94 1-76 (76)
26 1wgd_A Homocysteine-responsive 99.7 5.2E-17 1.8E-21 140.9 9.8 81 16-96 5-91 (93)
27 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.5E-16 5E-21 141.5 12.8 83 15-98 14-96 (106)
28 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 5.8E-17 2E-21 140.1 9.8 77 19-95 2-78 (96)
29 2faz_A Ubiquitin-like containi 99.7 5.7E-17 2E-21 135.0 9.4 75 18-92 2-78 (78)
30 3m62_B UV excision repair prot 99.7 2.6E-17 9E-22 147.1 7.3 78 18-95 1-78 (106)
31 2kk8_A Uncharacterized protein 99.7 7.2E-17 2.5E-21 138.9 8.8 75 16-90 8-83 (84)
32 1uel_A HHR23B, UV excision rep 99.7 1.9E-16 6.5E-21 138.2 11.6 78 19-96 1-81 (95)
33 2kan_A Uncharacterized protein 99.7 1.4E-16 4.8E-21 139.8 10.2 81 14-95 11-92 (94)
34 3vdz_A Ubiquitin-40S ribosomal 99.7 1.6E-16 5.4E-21 143.1 10.3 79 16-94 33-111 (111)
35 2kdi_A Ubiquitin, vacuolar pro 99.7 4.5E-17 1.5E-21 147.7 6.7 101 17-122 8-113 (114)
36 1sif_A Ubiquitin; hydrophobic 99.7 1.5E-16 5.3E-21 137.0 8.8 77 18-94 9-85 (88)
37 2l7r_A Ubiquitin-like protein 99.7 1.2E-16 4.3E-21 139.3 8.3 81 12-94 13-93 (93)
38 1wia_A Hypothetical ubiquitin- 99.7 3.3E-16 1.1E-20 136.1 10.8 81 13-96 2-83 (95)
39 4a20_A Ubiquitin-like protein 99.7 1.6E-16 5.4E-21 141.7 8.5 79 14-92 15-97 (98)
40 1yqb_A Ubiquilin 3; structural 99.7 2.9E-16 1E-20 139.2 10.0 81 14-95 18-98 (100)
41 2bwf_A Ubiquitin-like protein 99.7 3.1E-16 1E-20 129.5 9.4 74 17-91 3-76 (77)
42 2lxa_A Ubiquitin-like protein 99.7 9.8E-17 3.3E-21 140.1 6.5 74 18-91 1-78 (87)
43 1v5o_A 1700011N24RIK protein; 99.6 4.1E-16 1.4E-20 138.1 9.9 82 17-98 6-92 (102)
44 2klc_A Ubiquilin-1; ubiquitin- 99.6 6.3E-16 2.2E-20 137.1 10.6 80 14-94 21-100 (101)
45 1j8c_A Ubiquitin-like protein 99.6 1E-15 3.5E-20 141.2 12.3 81 16-97 30-110 (125)
46 1v2y_A 3300001G02RIK protein; 99.6 3E-16 1E-20 141.9 8.3 80 15-94 4-99 (105)
47 1yx5_B Ubiquitin; proteasome, 99.6 6E-16 2.1E-20 135.2 9.9 76 19-94 1-76 (98)
48 3b1l_X E3 ubiquitin-protein li 99.4 1.8E-17 6E-22 137.2 0.0 75 19-93 1-75 (76)
49 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.6E-15 5.6E-20 139.2 11.9 84 11-94 9-102 (116)
50 2ojr_A Ubiquitin; lanthide-bin 99.6 1.3E-15 4.6E-20 136.7 10.8 79 16-94 33-111 (111)
51 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.7E-20 143.3 10.5 79 16-94 79-157 (159)
52 3l0w_B Monoubiquitinated proli 99.6 1.9E-15 6.5E-20 145.8 10.7 77 19-95 1-77 (169)
53 1we6_A Splicing factor, putati 99.6 1.5E-15 5.2E-20 136.2 8.9 78 17-94 26-107 (111)
54 1wju_A NEDD8 ultimate buster-1 99.6 1.7E-15 5.7E-20 136.2 8.9 76 19-95 16-95 (100)
55 1v86_A DNA segment, CHR 7, way 99.6 2.8E-15 9.5E-20 131.6 9.5 81 11-93 10-90 (95)
56 1wxv_A BAG-family molecular ch 99.6 4.9E-15 1.7E-19 128.0 10.8 78 15-93 4-87 (92)
57 1x1m_A Ubiquitin-like protein 99.6 3E-15 1E-19 133.8 9.7 81 14-94 8-103 (107)
58 2gow_A HCG-1 protein, ubiquiti 99.6 3.3E-15 1.1E-19 138.8 9.4 83 12-94 11-103 (125)
59 1v5t_A 8430435I17RIK protein; 99.6 3.4E-15 1.2E-19 129.5 8.7 77 15-92 4-84 (90)
60 1wgg_A Ubiquitin carboxyl-term 99.6 7.2E-15 2.5E-19 129.5 10.5 76 15-92 4-80 (96)
61 2fnj_B Transcription elongatio 99.6 2.8E-15 9.6E-20 138.4 7.8 72 19-90 1-80 (118)
62 2kdb_A Homocysteine-responsive 99.6 2.6E-15 9E-20 133.9 7.0 75 14-88 19-99 (99)
63 2daf_A FLJ35834 protein; hypot 99.6 2.8E-14 9.6E-19 131.7 13.8 83 11-93 8-91 (118)
64 1se9_A Ubiquitin family; ubiqu 99.6 7E-15 2.4E-19 137.1 9.7 81 14-94 12-106 (126)
65 3m63_B Ubiquitin domain-contai 99.6 1.4E-15 4.9E-20 135.1 4.7 75 16-91 26-100 (101)
66 3q3f_A Ribonuclease/ubiquitin 99.6 5.9E-15 2E-19 145.6 9.5 77 18-94 105-181 (189)
67 4ajy_B Transcription elongatio 99.6 4.9E-15 1.7E-19 136.8 8.0 73 19-91 1-81 (118)
68 3u30_A Ubiquitin, linear DI-ub 99.6 6.6E-15 2.3E-19 140.3 9.0 78 17-94 95-172 (172)
69 1we7_A SF3A1 protein; structur 99.5 1.4E-14 4.6E-19 130.9 10.1 78 17-94 24-111 (115)
70 3b08_A Polyubiquitin-C, ubiqui 99.5 1.6E-14 5.6E-19 132.6 10.3 78 17-94 75-152 (152)
71 4dbg_A Ranbp-type and C3HC4-ty 99.5 1.8E-14 6E-19 130.6 9.9 79 14-92 20-101 (105)
72 3u5e_m 60S ribosomal protein L 99.5 5.5E-16 1.9E-20 142.6 0.0 76 19-94 1-76 (128)
73 2kd0_A LRR repeats and ubiquit 99.5 3.4E-14 1.2E-18 122.2 9.0 73 17-90 11-83 (85)
74 3u5c_f 40S ribosomal protein S 99.5 3.2E-15 1.1E-19 142.7 0.0 77 19-95 1-77 (152)
75 1oqy_A HHR23A, UV excision rep 99.5 3.5E-14 1.2E-18 152.3 7.5 80 15-94 4-87 (368)
76 2dzm_A FAS-associated factor 1 99.5 1.3E-13 4.5E-18 123.5 9.8 75 18-93 8-84 (100)
77 2kjr_A CG11242; UBL, ubiquitin 99.4 3.4E-13 1.2E-17 119.4 10.0 76 13-88 10-93 (95)
78 2dzj_A Synaptic glycoprotein S 99.4 1.3E-13 4.5E-18 120.1 7.2 72 16-87 8-85 (88)
79 4b6w_A Tubulin-specific chaper 99.4 1.4E-13 4.9E-18 119.6 6.9 75 18-92 2-85 (86)
80 3ai5_A Yeast enhanced green fl 99.4 3.5E-13 1.2E-17 141.6 9.8 80 13-92 228-307 (307)
81 1wf9_A NPL4 family protein; be 99.4 5.2E-13 1.8E-17 119.6 8.5 76 17-93 6-97 (107)
82 2kj6_A Tubulin folding cofacto 99.4 1.2E-12 4.1E-17 116.4 9.8 76 15-90 11-95 (97)
83 1v6e_A Cytoskeleton-associated 99.4 1.4E-12 4.8E-17 114.1 8.9 76 16-91 5-88 (95)
84 2io1_B Small ubiquitin-related 99.4 1.3E-12 4.5E-17 115.4 8.7 80 15-94 4-83 (94)
85 1t0y_A Tubulin folding cofacto 99.3 3.8E-12 1.3E-16 116.6 10.1 76 17-92 5-88 (122)
86 2xzm_9 RPS31E; ribosome, trans 99.3 1.2E-13 4.3E-18 136.4 0.0 72 19-95 1-72 (189)
87 1wz0_A Ubiquitin-like protein 99.3 1.9E-11 6.6E-16 110.1 11.5 81 15-95 21-101 (104)
88 2io0_B Small ubiquitin-related 99.3 1.6E-11 5.3E-16 108.2 10.2 79 16-94 3-81 (91)
89 2d07_B Ubiquitin-like protein 99.3 1.4E-11 4.7E-16 108.5 9.5 79 15-93 14-92 (93)
90 2kzr_A Ubiquitin thioesterase 99.2 1.1E-11 3.7E-16 106.5 6.5 72 19-91 1-78 (86)
91 2k8h_A Small ubiquitin protein 99.2 4.5E-11 1.5E-15 108.9 10.6 82 13-94 21-102 (110)
92 3shq_A UBLCP1; phosphatase, hy 99.2 1.3E-11 4.3E-16 130.2 7.5 75 16-91 3-80 (320)
93 2eke_C Ubiquitin-like protein 99.2 5.2E-11 1.8E-15 107.9 10.4 81 12-93 25-105 (106)
94 1wm3_A Ubiquitin-like protein 99.2 4.7E-11 1.6E-15 99.9 9.3 71 19-89 2-72 (72)
95 3a4r_A Nfatc2-interacting prot 99.2 1.1E-10 3.8E-15 99.7 10.5 74 15-88 4-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 9.9E-10 3.4E-14 96.2 9.3 77 15-91 6-93 (97)
97 3kyd_D Small ubiquitin-related 98.8 1.7E-08 5.7E-13 93.0 10.5 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.7 6E-08 2.1E-12 96.7 9.9 81 14-95 25-105 (200)
99 3tix_A Ubiquitin-like protein 98.7 3.7E-08 1.3E-12 98.0 8.1 81 14-95 53-133 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 4.8E-08 1.7E-12 98.3 0.2 83 12-95 15-97 (227)
101 2pjh_A Protein NPL4, nuclear p 98.2 5.8E-07 2E-11 77.2 3.5 71 17-88 3-78 (80)
102 2jxx_A Nfatc2-interacting prot 98.2 6.7E-06 2.3E-10 73.6 9.8 77 12-88 19-96 (97)
103 3goe_A DNA repair protein RAD6 98.1 1.6E-05 5.3E-10 69.2 9.6 73 17-89 8-81 (82)
104 3uf8_A Ubiquitin-like protein 98.0 1.4E-05 4.9E-10 79.4 9.3 82 13-95 16-97 (209)
105 3ix6_A TS, tsase, thymidylate 97.9 1.8E-06 6E-11 92.8 0.0 81 13-94 16-96 (360)
106 4da1_A Protein phosphatase 1K, 97.8 2.6E-06 8.8E-11 91.0 0.0 79 15-94 27-105 (389)
107 2l76_A Nfatc2-interacting prot 97.8 0.0001 3.5E-09 66.0 10.2 78 13-91 16-93 (95)
108 4efo_A Serine/threonine-protei 97.7 7.7E-05 2.6E-09 66.6 7.2 68 21-88 15-86 (94)
109 2bps_A YUKD protein; ubiquitin 97.4 0.00035 1.2E-08 60.8 7.1 71 17-87 3-80 (81)
110 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.00032 1.1E-08 65.8 6.1 70 20-89 13-121 (128)
111 2al3_A TUG long isoform; TUG U 97.0 0.0016 5.4E-08 57.9 7.2 76 18-93 9-84 (90)
112 3qx1_A FAS-associated factor 1 96.8 0.0055 1.9E-07 52.4 9.1 74 15-89 4-82 (84)
113 3plu_A Ubiquitin-like modifier 96.6 4E-05 1.4E-09 68.3 -5.9 42 101-142 23-67 (93)
114 2dzk_A UBX domain-containing p 96.6 0.015 5.2E-07 52.4 10.7 77 15-91 10-91 (109)
115 1wju_A NEDD8 ultimate buster-1 96.5 0.00025 8.4E-09 63.8 -1.4 36 107-142 29-65 (100)
116 2xzm_9 RPS31E; ribosome, trans 96.4 0.00054 1.9E-08 67.9 0.0 42 101-142 2-46 (189)
117 4eew_A Large proline-rich prot 96.3 7.2E-05 2.5E-09 63.4 -5.8 59 79-142 2-63 (88)
118 1wj4_A KIAA0794 protein; UBX d 96.1 0.018 6.1E-07 53.2 8.5 75 15-90 40-119 (124)
119 1uh6_A Ubiquitin-like 5; beta- 96.1 0.00019 6.6E-09 64.5 -4.7 38 105-142 36-74 (100)
120 3m63_B Ubiquitin domain-contai 95.7 0.00045 1.6E-08 61.1 -3.7 65 71-142 7-73 (101)
121 2cr5_A Reproduction 8; UBX dom 95.7 0.085 2.9E-06 47.4 11.0 74 16-90 21-98 (109)
122 2lxa_A Ubiquitin-like protein 95.7 0.00044 1.5E-08 60.2 -3.8 38 105-142 9-50 (87)
123 1s3s_G P47 protein; AAA ATPase 95.2 0.049 1.7E-06 50.4 7.8 72 15-86 49-124 (127)
124 3b1l_X E3 ubiquitin-protein li 94.1 0.0037 1.3E-07 51.1 0.0 38 105-142 8-46 (76)
125 3phx_B Ubiquitin-like protein 94.8 0.00067 2.3E-08 56.2 -5.2 38 105-142 12-50 (79)
126 2daj_A KIAA0977 protein, COBL- 94.8 0.059 2E-06 47.7 6.7 68 14-81 6-76 (91)
127 4b6w_A Tubulin-specific chaper 94.8 0.0033 1.1E-07 54.5 -1.3 35 108-142 15-50 (86)
128 2kjr_A CG11242; UBL, ubiquitin 94.7 0.002 6.8E-08 56.9 -2.8 35 108-142 28-63 (95)
129 4e71_A Plexin-B2, MM1; transme 94.6 0.15 5.3E-06 46.8 9.3 74 17-90 10-110 (111)
130 4dwf_A HLA-B-associated transc 94.6 0.0008 2.7E-08 57.2 -5.5 38 105-142 13-51 (90)
131 3u5e_m 60S ribosomal protein L 94.5 0.0064 2.2E-07 55.6 0.0 38 105-142 8-46 (128)
132 2kk8_A Uncharacterized protein 94.5 0.00084 2.9E-08 57.5 -5.5 38 105-142 18-56 (84)
133 4ajy_B Transcription elongatio 94.5 0.0012 4.1E-08 61.1 -4.9 34 109-142 13-47 (118)
134 2fnj_B Transcription elongatio 94.5 0.0012 4.2E-08 61.0 -4.9 34 109-142 13-47 (118)
135 2kj6_A Tubulin folding cofacto 94.5 0.0025 8.5E-08 56.6 -2.8 35 108-142 27-62 (97)
136 3ivf_A Talin-1; FERM domain, c 94.4 0.07 2.4E-06 56.3 7.6 102 18-126 3-114 (371)
137 2dzm_A FAS-associated factor 1 94.4 0.0017 5.8E-08 58.1 -4.1 37 105-141 16-53 (100)
138 2r2o_A Plexin-B1; effector dom 94.4 0.14 4.6E-06 48.8 8.6 77 16-92 22-130 (138)
139 3dbh_I NEDD8; cell cycle, acti 94.3 0.0016 5.5E-08 54.6 -4.2 38 105-142 20-58 (88)
140 3u5c_f 40S ribosomal protein S 94.2 0.0082 2.8E-07 57.3 0.0 38 105-142 8-46 (152)
141 1wyw_B Ubiquitin-like protein 94.0 0.0037 1.3E-07 54.5 -2.6 38 105-142 29-67 (97)
142 3m62_B UV excision repair prot 93.9 0.0031 1E-07 56.1 -3.4 38 105-142 9-47 (106)
143 3v6c_B Ubiquitin; structural g 93.9 0.002 7E-08 55.1 -4.5 38 105-142 25-63 (91)
144 4fbj_B NEDD8; effector-HOST ta 93.8 0.0017 6E-08 55.5 -5.0 38 105-142 8-46 (88)
145 1v5t_A 8430435I17RIK protein; 93.6 0.0035 1.2E-07 54.0 -3.6 41 100-140 8-51 (90)
146 1wgh_A Ubiquitin-like 3, HCG-1 93.4 0.0048 1.6E-07 56.7 -3.2 39 105-143 24-71 (116)
147 1wh3_A 59 kDa 2'-5'-oligoadeny 93.3 0.003 1E-07 53.1 -4.4 38 105-142 15-53 (87)
148 4a20_A Ubiquitin-like protein 93.0 0.0044 1.5E-07 55.1 -3.9 38 105-142 27-68 (98)
149 2l7r_A Ubiquitin-like protein 93.0 0.0025 8.5E-08 55.2 -5.4 43 100-142 20-63 (93)
150 2uyz_B Small ubiquitin-related 92.8 0.0033 1.1E-07 52.0 -4.7 38 105-142 11-49 (79)
151 3jyu_A Ubiquitin carboxyl-term 92.8 0.48 1.7E-05 47.6 10.1 76 19-94 140-224 (231)
152 2hj8_A Interferon-induced 17 k 92.8 0.0035 1.2E-07 53.5 -4.7 37 106-142 13-50 (88)
153 4a3p_A Ubiquitin carboxyl-term 92.7 0.5 1.7E-05 47.0 9.9 76 19-94 128-212 (217)
154 1wgg_A Ubiquitin carboxyl-term 92.6 0.0035 1.2E-07 54.9 -5.0 35 107-141 16-52 (96)
155 1wgd_A Homocysteine-responsive 92.6 0.0068 2.3E-07 52.1 -3.2 34 109-142 21-57 (93)
156 2faz_A Ubiquitin-like containi 92.5 0.0033 1.1E-07 51.7 -5.1 38 105-142 10-50 (78)
157 1wy8_A NP95-like ring finger p 92.5 0.0051 1.8E-07 51.9 -4.0 38 105-142 15-55 (89)
158 4dbg_A Ranbp-type and C3HC4-ty 92.3 0.0045 1.5E-07 56.2 -4.9 35 108-142 37-72 (105)
159 3mtn_B UBA80, ubcep1, ubiquiti 92.2 0.0077 2.6E-07 49.8 -3.2 38 105-142 11-49 (85)
160 1sif_A Ubiquitin; hydrophobic 92.1 0.0045 1.5E-07 52.9 -4.9 43 100-142 10-55 (88)
161 4hcn_B Polyubiquitin, ubiquiti 92.1 0.0048 1.7E-07 53.7 -4.8 38 105-142 30-68 (98)
162 2gow_A HCG-1 protein, ubiquiti 92.0 0.0095 3.2E-07 55.3 -3.1 38 105-142 25-71 (125)
163 1se9_A Ubiquitin family; ubiqu 92.0 0.011 3.9E-07 55.1 -2.6 38 105-142 24-70 (126)
164 2kan_A Uncharacterized protein 91.8 0.0056 1.9E-07 53.3 -4.7 34 109-142 26-60 (94)
165 2kdb_A Homocysteine-responsive 91.8 0.0082 2.8E-07 53.3 -3.7 34 109-142 37-73 (99)
166 1ttn_A DC-UBP, dendritic cell- 91.7 0.0063 2.2E-07 53.9 -4.5 38 105-142 31-69 (106)
167 3n3k_B Ubiquitin; hydrolase, p 91.7 0.0065 2.2E-07 50.4 -4.2 38 105-142 11-49 (85)
168 2dzi_A Ubiquitin-like protein 91.6 0.0074 2.5E-07 49.6 -4.0 38 105-142 15-53 (81)
169 1v5o_A 1700011N24RIK protein; 91.4 0.011 3.7E-07 52.0 -3.3 36 107-142 21-57 (102)
170 3k9o_B Ubiquitin, UBB+1; E2-25 91.4 0.0056 1.9E-07 52.4 -5.0 38 105-142 9-47 (96)
171 1uel_A HHR23B, UV excision rep 91.4 0.007 2.4E-07 52.4 -4.5 38 105-142 8-49 (95)
172 1v86_A DNA segment, CHR 7, way 91.3 0.0073 2.5E-07 52.6 -4.6 36 106-141 25-61 (95)
173 2wyq_A HHR23A, UV excision rep 91.2 0.0072 2.5E-07 50.3 -4.5 38 105-142 13-54 (85)
174 4e74_A Plexin-A4; RBD, structu 91.1 0.54 1.8E-05 43.6 7.5 75 17-91 12-115 (117)
175 1ndd_A NEDD8, protein (ubiquit 90.9 0.0061 2.1E-07 49.1 -5.0 38 105-142 8-46 (76)
176 3l0w_B Monoubiquitinated proli 90.8 0.0082 2.8E-07 57.8 -5.1 38 105-142 8-46 (169)
177 3h6n_A Plexin-D1; structural g 90.6 0.96 3.3E-05 42.5 8.7 74 18-91 4-105 (127)
178 1v6e_A Cytoskeleton-associated 90.6 0.015 5E-07 50.6 -3.3 34 109-142 20-54 (95)
179 1vjk_A Molybdopterin convertin 90.1 1.9 6.3E-05 37.6 9.7 68 17-89 8-93 (98)
180 1oey_A P67-PHOX, neutrophil cy 90.0 1.3 4.4E-05 38.8 8.5 72 16-90 3-81 (83)
181 2ojr_A Ubiquitin; lanthide-bin 90.0 0.0043 1.5E-07 55.4 -7.3 37 106-142 44-81 (111)
182 1ryj_A Unknown; beta/alpha pro 89.9 2.3 8E-05 35.0 9.7 64 18-91 4-67 (70)
183 1we7_A SF3A1 protein; structur 89.5 0.016 5.6E-07 51.9 -4.0 57 83-142 24-81 (115)
184 3q3f_A Ribonuclease/ubiquitin 89.4 0.029 9.8E-07 55.4 -2.7 38 105-142 113-151 (189)
185 1yx5_B Ubiquitin; proteasome, 89.3 0.015 5E-07 50.4 -4.3 38 105-142 8-46 (98)
186 2dzj_A Synaptic glycoprotein S 88.9 0.034 1.2E-06 48.1 -2.2 38 105-142 18-60 (88)
187 2klc_A Ubiquilin-1; ubiquitin- 88.8 0.025 8.6E-07 49.7 -3.2 36 107-142 34-70 (101)
188 3vdz_A Ubiquitin-40S ribosomal 88.8 0.012 4E-07 52.7 -5.4 38 105-142 43-81 (111)
189 1wx8_A Riken cDNA 4931431F19; 88.8 0.02 6.8E-07 49.2 -3.8 36 107-142 26-62 (96)
190 1we6_A Splicing factor, putati 88.4 0.03 1E-06 49.8 -3.0 52 81-142 24-77 (111)
191 2kd0_A LRR repeats and ubiquit 88.3 0.015 5.3E-07 49.5 -4.8 37 106-142 20-57 (85)
192 1wxv_A BAG-family molecular ch 88.2 0.024 8E-07 48.5 -3.7 36 107-142 16-57 (92)
193 3a9j_A Ubiquitin; protein comp 87.9 0.015 5.2E-07 46.8 -4.9 37 106-142 9-46 (76)
194 1j8c_A Ubiquitin-like protein 87.7 0.034 1.2E-06 51.1 -3.2 36 107-142 41-77 (125)
195 1t0y_A Tubulin folding cofacto 87.6 0.045 1.5E-06 49.9 -2.5 34 109-142 19-53 (122)
196 2bwf_A Ubiquitin-like protein 87.6 0.017 5.9E-07 46.9 -4.7 36 107-142 13-49 (77)
197 2kdi_A Ubiquitin, vacuolar pro 87.4 0.026 8.9E-07 50.8 -4.1 38 105-142 17-55 (114)
198 1v2y_A 3300001G02RIK protein; 87.3 0.0095 3.2E-07 53.8 -7.0 33 105-137 15-48 (105)
199 2l32_A Small archaeal modifier 87.0 1.4 4.7E-05 37.2 6.5 62 19-90 1-62 (74)
200 1vd2_A Protein kinase C, IOTA 86.8 2.5 8.5E-05 37.3 8.3 52 14-66 2-54 (89)
201 3kuz_A Plexin-C1; structural g 86.6 2.8 9.6E-05 39.3 8.9 73 17-89 18-125 (126)
202 1wx7_A Ubiquilin 3; ubiquitin- 86.2 0.05 1.7E-06 47.9 -2.9 33 110-142 29-62 (106)
203 1wf9_A NPL4 family protein; be 85.9 0.042 1.4E-06 48.9 -3.6 36 106-142 16-53 (107)
204 1yqb_A Ubiquilin 3; structural 85.8 0.057 2E-06 47.4 -2.7 33 110-142 34-67 (100)
205 1tyg_B YJBS; alpha beta barrel 85.2 1.9 6.4E-05 37.7 6.7 70 12-91 14-84 (87)
206 1wgk_A Riken cDNA 2900073H19 p 85.1 1.4 4.9E-05 40.0 6.1 76 17-94 10-108 (114)
207 3rpf_C Molybdopterin convertin 84.8 2.6 8.8E-05 34.8 7.0 68 19-91 1-71 (74)
208 4efo_A Serine/threonine-protei 84.2 0.035 1.2E-06 49.5 -4.8 39 105-143 21-60 (94)
209 3po0_A Small archaeal modifier 84.2 6.8 0.00023 33.0 9.6 58 29-91 18-86 (89)
210 1wgr_A Growth factor receptor- 83.0 5.7 0.0002 35.8 8.9 81 13-93 4-95 (100)
211 3hm6_X Plexin-B1; structural g 82.1 3.4 0.00012 47.6 8.7 78 16-93 255-364 (644)
212 1wia_A Hypothetical ubiquitin- 81.5 0.077 2.6E-06 45.5 -3.7 36 105-142 15-50 (95)
213 3ai5_A Yeast enhanced green fl 81.3 0.086 3E-06 55.7 -4.1 44 99-142 233-279 (307)
214 1x1m_A Ubiquitin-like protein 80.6 0.1 3.5E-06 46.2 -3.2 29 114-142 40-73 (107)
215 1oqy_A HHR23A, UV excision rep 79.2 0.1 3.6E-06 56.2 -4.4 38 105-142 15-56 (368)
216 1ef1_A Moesin; membrane, FERM 78.6 6.9 0.00024 39.5 9.0 72 18-90 1-78 (294)
217 2juo_A GA-binding protein alph 78.5 3.9 0.00014 36.2 6.1 61 31-91 5-65 (89)
218 3qij_A Protein 4.1; cytoskelet 77.4 5 0.00017 41.2 7.6 80 11-90 10-95 (296)
219 1h4r_A Merlin; FERM, neurofibr 76.7 6.9 0.00024 40.0 8.4 74 16-90 20-98 (314)
220 3dwg_C 9.5 kDa culture filtrat 76.4 8.7 0.0003 32.7 7.7 72 19-92 1-91 (93)
221 1ip9_A BEM1 protein; ubiquitin 76.3 9.6 0.00033 33.6 7.9 67 17-87 11-82 (85)
222 2kmc_A Fermitin family homolog 75.9 12 0.00042 33.9 8.7 72 19-90 20-99 (102)
223 2kzr_A Ubiquitin thioesterase 75.3 0.12 4.2E-06 43.8 -4.2 36 105-141 8-45 (86)
224 3ivf_A Talin-1; FERM domain, c 75.1 10 0.00035 39.9 9.4 74 17-90 84-167 (371)
225 1f0z_A THis protein; ubiquitin 75.0 7.2 0.00025 31.4 6.5 58 27-91 6-63 (66)
226 2qjl_A URM1, ubiquitin-related 74.8 19 0.00064 31.2 9.6 70 19-90 2-95 (99)
227 3shq_A UBLCP1; phosphatase, hy 74.2 0.22 7.6E-06 52.6 -3.5 36 106-141 13-49 (320)
228 1fm0_D Molybdopterin convertin 73.5 9 0.00031 31.5 6.9 56 29-90 17-77 (81)
229 3ig3_A Plxna3 protein; plexin 73.3 9.5 0.00032 43.9 9.0 77 16-92 231-336 (627)
230 2kl0_A Putative thiamin biosyn 73.0 7.9 0.00027 32.4 6.4 60 27-94 6-65 (73)
231 2kvr_A Ubiquitin carboxyl-term 72.3 3 0.0001 38.8 4.0 34 31-64 58-91 (130)
232 2l52_A Methanosarcina acetivor 71.4 13 0.00046 32.3 7.8 69 18-90 3-95 (99)
233 2i1j_A Moesin; FERM, coiled-co 71.0 10 0.00035 42.9 8.8 74 17-91 3-82 (575)
234 2k9x_A Tburm1, uncharacterized 69.8 1.6 5.4E-05 39.6 1.5 75 17-93 3-101 (110)
235 1wgy_A RAP guanine nucleotide 67.2 18 0.00062 32.8 7.8 76 15-90 6-86 (104)
236 2q5w_D Molybdopterin convertin 66.7 9.6 0.00033 31.1 5.5 56 29-90 16-73 (77)
237 2k5p_A THis protein, thiamine- 64.1 12 0.00041 31.7 5.8 68 19-94 1-69 (78)
238 2cu3_A Unknown function protei 60.7 16 0.00055 29.3 5.7 58 26-91 4-61 (64)
239 4eut_A Serine/threonine-protei 59.0 29 0.001 35.8 8.8 52 28-79 321-374 (396)
240 1q1o_A Cell division control p 58.4 21 0.00072 32.1 6.5 47 19-65 6-64 (98)
241 2io1_B Small ubiquitin-related 55.7 0.63 2.1E-05 40.8 -3.7 40 105-144 15-55 (94)
242 2kmm_A Guanosine-3',5'-BIS(dip 53.5 18 0.00062 28.9 4.9 63 19-90 1-63 (73)
243 3qa8_A MGC80376 protein; kinas 52.7 13 0.00043 43.0 5.2 51 27-77 320-371 (676)
244 2daf_A FLJ35834 protein; hypot 52.6 0.64 2.2E-05 43.2 -4.4 36 107-142 26-62 (118)
245 2ylm_A Ubiquitin carboxyl-term 45.5 28 0.00096 39.0 6.4 78 14-91 126-218 (530)
246 2g1e_A Hypothetical protein TA 45.1 63 0.0022 26.7 7.1 57 33-90 19-86 (90)
247 2ylm_A Ubiquitin carboxyl-term 42.9 17 0.00059 40.7 4.2 32 31-62 38-69 (530)
248 1wjn_A Tubulin-folding protein 42.7 7.1 0.00024 33.5 0.9 37 106-142 21-58 (97)
249 2dhz_A RAP guanine nucleotide 42.3 56 0.0019 30.4 6.8 74 17-90 8-92 (120)
250 2lgx_A Fermitin family homolog 42.2 9.4 0.00032 35.1 1.6 77 13-90 19-102 (112)
251 1y8x_B Ubiquitin-activating en 41.7 28 0.00095 31.1 4.6 59 30-88 6-82 (98)
252 3onh_A Ubiquitin-activating en 41.5 40 0.0014 31.7 5.7 51 38-89 19-78 (127)
253 3au4_A Myosin-X; protein-prote 40.2 51 0.0017 36.5 7.4 47 17-63 215-263 (555)
254 1wm3_A Ubiquitin-like protein 38.7 1.3 4.5E-05 36.4 -4.2 38 105-142 9-47 (72)
255 2hj1_A Hypothetical protein; s 37.5 62 0.0021 28.7 6.1 71 17-92 11-87 (97)
256 1f2r_I Inhibitor of caspase-ac 35.9 1.7E+02 0.006 26.3 8.8 68 19-91 19-90 (100)
257 2c7h_A RBBP6, retinoblastoma-b 35.4 74 0.0025 28.0 6.1 45 17-61 5-51 (86)
258 3a4r_A Nfatc2-interacting prot 35.4 1.3 4.4E-05 37.3 -4.9 38 105-142 15-54 (79)
259 1rws_A Hypothetical protein PF 34.0 14 0.00048 30.7 1.3 48 33-89 25-72 (77)
260 3ge3_C Toluene-4-monooxygenase 33.0 2.4E+02 0.0081 24.9 8.8 71 19-89 4-82 (84)
261 2eel_A Cell death activator CI 31.1 1E+02 0.0035 27.3 6.4 67 19-91 10-79 (91)
262 2k8h_A Small ubiquitin protein 31.0 4.6 0.00016 36.6 -2.3 38 105-142 34-72 (110)
263 2io0_B Small ubiquitin-related 30.9 2.5 8.6E-05 36.8 -3.9 40 105-144 13-53 (91)
264 4gmv_A RAS-associated and plec 28.2 1.8E+02 0.0062 30.2 8.8 72 17-88 30-112 (281)
265 1wmh_B Partitioning defective- 28.0 2.2E+02 0.0074 25.0 7.8 49 16-65 4-54 (86)
266 2inc_C TOUB protein; DIIRON, 4 27.1 2E+02 0.0068 25.3 7.3 70 21-90 4-82 (83)
267 2d07_B Ubiquitin-like protein 26.9 3.4 0.00012 35.9 -3.8 40 106-145 26-66 (93)
268 2v1y_A Phosphatidylinositol-4, 25.0 1.1E+02 0.0038 27.8 5.6 75 15-90 16-104 (108)
269 1j0g_A Hypothetical protein 18 24.3 2.1E+02 0.0073 25.2 7.0 63 31-93 26-89 (92)
270 3pvl_A Myosin VIIA isoform 1; 23.5 97 0.0033 35.6 6.2 39 17-55 262-300 (655)
271 3r8s_T 50S ribosomal protein L 22.5 1.5E+02 0.0052 26.1 5.9 40 28-67 27-67 (93)
272 1wz0_A Ubiquitin-like protein 21.7 4.7 0.00016 36.0 -4.0 40 105-144 32-72 (104)
273 3tca_A Amyloid beta A4 precurs 21.3 1.7E+02 0.0058 28.7 6.8 41 18-58 34-74 (291)
274 2beq_A E2 glycoprotein; viral 20.9 1.4E+02 0.0049 22.7 4.5 28 277-305 11-38 (38)
275 4a6q_A Histone deacetylase com 20.9 1.1E+02 0.0036 29.3 4.8 79 14-92 25-140 (143)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.86 E-value=8.2e-23 Score=194.78 Aligned_cols=126 Identities=30% Similarity=0.448 Sum_probs=113.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||+++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 92 PVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 92 pggp~ss~~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+ .+.+++ .+|+++.+.|.++++|..||.+|+ ++|||+++|||+|.
T Consensus 94 ~g-----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 94 RG-----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CC-----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cc-----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 76 355554 678899999999999999999999 89999999999974
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.85 E-value=1.5e-22 Score=189.84 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=111.2
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCCchhhccccccCCCEEEEeeec-CCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F-~GKvLkDdkTLsDYGIedGSTLhLVlRl-pgg 94 (730)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 489999999999999999999999999999999999999999999 9 7999999999999999999999999984 33
Q ss_pred CCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 95 p~ss~~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+++++ .+|+.+.+.|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 466655 678999999999999999999999 89999999999874
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=7.4e-21 Score=174.85 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=110.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp~ss 98 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 99 ~~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+.+++ ..|+.+.+.|.++++|..||.+|+ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 354544 578888999999999999999999 89999999999874
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=143.80 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+.+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999754
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=4.1e-18 Score=146.00 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
+.+|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||+++.+..+
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 899999999987654
Q ss_pred C
Q 004794 96 S 96 (730)
Q Consensus 96 ~ 96 (730)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=5.2e-18 Score=143.74 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=77.7
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
...+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 44567799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 87 GG 88 (88)
T 3dbh_I 87 GG 88 (88)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.5e-18 Score=150.03 Aligned_cols=82 Identities=34% Similarity=0.487 Sum_probs=74.9
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
...+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.3e-17 Score=143.94 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 004794 92 P 92 (730)
Q Consensus 92 p 92 (730)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.72 E-value=9.7e-18 Score=149.09 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
....+|+|+||++.|+++.++|++++||.+||++|+++.|+|+++|||+|.||+|+|+.+|++|+|++|++|||+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999974
No 10
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=3.3e-17 Score=139.84 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCCcEEEEEEecCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 15 SETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 15 s~~tMqItVKtldG-Kt~tL-eVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
....|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 44679999999999 79999 59999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004794 93 VPSS 96 (730)
Q Consensus 93 ggp~ 96 (730)
++.+
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.72 E-value=1.2e-17 Score=143.92 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=73.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998764
No 12
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=148.31 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEE
Q 004794 7 VKIPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 7 ee~s~s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLh 86 (730)
+.+.........|+|+||+++|+++.++|++++||.+||++|+.++|+++++|||+|+||.|+|+++|++|+|++|++||
T Consensus 12 ~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 12 DIPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQ 91 (106)
T ss_dssp ---------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEE
T ss_pred cCCCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 33344445667799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCC
Q 004794 87 MVVRQPVPS 95 (730)
Q Consensus 87 LVlRlpggp 95 (730)
|+++.+..+
T Consensus 92 lv~~~~~~~ 100 (106)
T 1ttn_A 92 VIVSQPVQN 100 (106)
T ss_dssp EECCCSSCC
T ss_pred EEEeCCCCC
Confidence 999987653
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3e-17 Score=139.29 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=76.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
++..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998875
No 14
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.1e-17 Score=143.67 Aligned_cols=86 Identities=29% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEe
Q 004794 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 9 ~s~s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
......+..+|+|+||+. ++++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+
T Consensus 8 ~~~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 8 VSGREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp CCCSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred ccCCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEE
Confidence 333444667899999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 004794 89 VRQPVPS 95 (730)
Q Consensus 89 lRlpggp 95 (730)
+++.+++
T Consensus 87 ~~~~~g~ 93 (96)
T 1wx8_A 87 VRSHSGP 93 (96)
T ss_dssp BCCSSCS
T ss_pred EeCCCCC
Confidence 9988754
No 15
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=2.8e-17 Score=134.63 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=72.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763
No 16
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.5e-17 Score=137.30 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.0
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
.+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 17
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.4e-17 Score=148.20 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=76.7
Q ss_pred CCCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEE
Q 004794 8 KIPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 8 e~s~s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
.+-.+++...+|+|+||++.|+++.|+|++++||.+||++|++++|+|+++|||+|.||+|+|+++|++|+|+++++|||
T Consensus 18 ~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 18 VPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp CCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEE
T ss_pred ccccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEE
Confidence 33456677778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 004794 88 VV 89 (730)
Q Consensus 88 Vl 89 (730)
+.
T Consensus 98 ~~ 99 (100)
T 1uh6_A 98 YY 99 (100)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=2.1e-17 Score=138.94 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=73.0
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
.+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998753
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=2.8e-17 Score=137.43 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=74.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
+.|+|+||+++|+++.++|++++||.+||++|+++.++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998763
No 20
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=139.56 Aligned_cols=76 Identities=45% Similarity=0.673 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
.....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 345679999999999999999999999999999999999999999999999999999999999999 8999999986
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=135.48 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=74.7
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
.+...|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999863
No 22
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.6e-17 Score=143.74 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
......|+|+||+++|+++.|+|++++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++.
T Consensus 16 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 16 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp ---CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 96 GG 97 (97)
T 1wyw_B 96 GG 97 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 23
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=5.2e-17 Score=137.03 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaek---tGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
+..|+|+||+++|+++.++|++++||.+||++|+++ +++|+++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 467999999999999999999999999999999998 88999999999999999999999999999999999999876
Q ss_pred C
Q 004794 93 V 93 (730)
Q Consensus 93 g 93 (730)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 24
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=140.62 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=72.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998775
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.69 E-value=6e-17 Score=132.63 Aligned_cols=76 Identities=37% Similarity=0.546 Sum_probs=73.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763
No 26
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.2e-17 Score=140.85 Aligned_cols=81 Identities=30% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCCchhhccc--cccCCCEEEEee
Q 004794 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (730)
Q Consensus 16 ~~tMqItVKtldGK--t~tLeVdpsdTV~dLKekIaekt--GIPpeqQRLIF~GKvLkDdkTLsDY--GIedGSTLhLVl 89 (730)
...|+|+||+.+++ ++.|+|++++||.+||++|++++ ++++++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999999988 67778889999999999999999 9999999999999999999999999 999999999999
Q ss_pred ecCCCCC
Q 004794 90 RQPVPSS 96 (730)
Q Consensus 90 Rlpggp~ 96 (730)
++.++++
T Consensus 85 ~~~gg~~ 91 (93)
T 1wgd_A 85 NVKSGPS 91 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887643
No 27
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.5e-16 Score=141.52 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=77.1
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
.+.+|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 467799999999886 7999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCC
Q 004794 95 SSSD 98 (730)
Q Consensus 95 p~ss 98 (730)
+..+
T Consensus 93 ~~~~ 96 (106)
T 1wx7_A 93 AMGN 96 (106)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5543
No 28
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.69 E-value=5.8e-17 Score=140.14 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998764
No 29
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.7e-17 Score=134.99 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEecCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtldGKt~-tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
.|+|+||+++|+++ .++ |++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 999 9999999999999999999999999999999999999999999999999999999863
No 30
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.6e-17 Score=147.09 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
+|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999987643
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=7.2e-17 Score=138.94 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.3
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCCchhhccccccCCCEEEEeee
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKv-LkDdkTLsDYGIedGSTLhLVlR 90 (730)
...|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.9e-16 Score=138.23 Aligned_cols=78 Identities=33% Similarity=0.562 Sum_probs=73.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaek---tGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
|+|+||+++|+.+.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999999876543
Q ss_pred C
Q 004794 96 S 96 (730)
Q Consensus 96 ~ 96 (730)
+
T Consensus 81 ~ 81 (95)
T 1uel_A 81 S 81 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.4e-16 Score=139.77 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=76.1
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-hhhccccccCCCEEEEeeecC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTLhLVlRlp 92 (730)
.....|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|+|+++++
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 455679999999887 899999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCC
Q 004794 93 VPS 95 (730)
Q Consensus 93 ggp 95 (730)
+++
T Consensus 90 gg~ 92 (94)
T 2kan_A 90 NRA 92 (94)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=1.6e-16 Score=143.09 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.3
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998763
No 35
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.5e-17 Score=147.67 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=91.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp~ 96 (730)
..++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCC-----CCCCCcccccccCCchhc
Q 004794 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (730)
Q Consensus 97 ss~~qI~v-----~tGrtitl~V~pSdTIe~ 122 (730)
.+++ .+|++++++|+++++|+.
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 2333 357888899999888764
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.5e-16 Score=137.03 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998774
No 37
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=139.29 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.......|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++|+
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 44456679999999 7999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004794 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 91 ~GG 93 (93)
T 2l7r_A 91 LGG 93 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 38
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.3e-16 Score=136.10 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-hhhccccccCCCEEEEeeec
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTLhLVlRl 91 (730)
.+++..|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 2 SSGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 3456779999999999999999999999999999999987 8999999999999999 99999999999999999998
Q ss_pred CCCCC
Q 004794 92 PVPSS 96 (730)
Q Consensus 92 pggp~ 96 (730)
+...+
T Consensus 79 ~~~~~ 83 (95)
T 1wia_A 79 PGAAV 83 (95)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=1.6e-16 Score=141.67 Aligned_cols=79 Identities=15% Similarity=0.383 Sum_probs=71.2
Q ss_pred CCCCcEEEEEEecCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCchhhccccc-cCCCEEEEee
Q 004794 14 SSETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVV 89 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tL--eVdpsdTV~dLKekI-aektGIPpeqQRLIF~GKvLkDdkTLsDYGI-edGSTLhLVl 89 (730)
+....|+|+||+++|++|.+ +|++++||.+||++| +++.|+|+++|||+|+||.|+|+++|++|+| ++|++|+|++
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 35567999999999998777 566999999999999 8888999999999999999999999999999 9999999999
Q ss_pred ecC
Q 004794 90 RQP 92 (730)
Q Consensus 90 Rlp 92 (730)
+++
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 864
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.9e-16 Score=139.16 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=75.8
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
..+..|+|+||+.+|+ +.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++++
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 4556799999999886 799999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 004794 94 PS 95 (730)
Q Consensus 94 gp 95 (730)
++
T Consensus 97 ~p 98 (100)
T 1yqb_A 97 RA 98 (100)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.65 E-value=3.1e-16 Score=129.53 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=70.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 3 M~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 459999999 99999999999999999999999999999999999999999999999999999999999998754
No 42
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.8e-17 Score=140.10 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.0
Q ss_pred cEEEEEEecCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCchhhccccc-cCCCEEEEeeec
Q 004794 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVd--psdTV~dLKekI-aektGIPpeqQRLIF~GKvLkDdkTLsDYGI-edGSTLhLVlRl 91 (730)
+|+|+||+++|+++.|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4999999999999998766 999999999999 9999999999999999999999999999999 799999999874
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.1e-16 Score=138.12 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=75.1
Q ss_pred CcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-hhhccccccCCCEEEEeeec
Q 004794 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 17 ~tMqItVKtldG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTLhLVlRl 91 (730)
..|+|+||+..+ +++.++|++++||.+||++|++++++|+++|||+|+||.|+|+ ++|++|+|++|++|||+.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999999754 7999999999999999999999999999999999999999988 79999999999999999998
Q ss_pred CCCCCCC
Q 004794 92 PVPSSSD 98 (730)
Q Consensus 92 pggp~ss 98 (730)
.+++..+
T Consensus 86 ~gg~~~~ 92 (102)
T 1v5o_A 86 NVGLRTP 92 (102)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8765543
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-16 Score=137.08 Aligned_cols=80 Identities=28% Similarity=0.406 Sum_probs=74.2
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
.....|+|+||+. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++++.
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3456799999998 899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 004794 94 P 94 (730)
Q Consensus 94 g 94 (730)
.
T Consensus 100 ~ 100 (101)
T 2klc_A 100 R 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1e-15 Score=141.20 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
...|+|+||+. ++++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999999 99999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 004794 96 SS 97 (730)
Q Consensus 96 ~s 97 (730)
.+
T Consensus 109 ~~ 110 (125)
T 1j8c_A 109 SS 110 (125)
T ss_dssp --
T ss_pred CC
Confidence 44
No 46
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3e-16 Score=141.92 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-Cchhhcccc
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYH 78 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp---------------eqQRLIF~GKvLk-DdkTLsDYG 78 (730)
....|+|+||+++|++|.|+|++++||.+||++|++++++++ ++|||+|+||.|+ |+++|++|+
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 345599999999999999999999999999999999999887 4679999999996 569999999
Q ss_pred ccCCCEEEEeeecCCC
Q 004794 79 VEDGHTLHMVVRQPVP 94 (730)
Q Consensus 79 IedGSTLhLVlRlpgg 94 (730)
|++|++|||++++.+.
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999999775
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=6e-16 Score=135.16 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998864
No 48
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.44 E-value=1.8e-17 Score=137.20 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999764
No 49
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.6e-15 Score=139.25 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCCchhhccccccCC
Q 004794 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (730)
Q Consensus 11 ~s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIae------ktGI--PpeqQRLIF~GKvLkDdkTLsDYGIedG 82 (730)
....+...|+|+||+++|++++|+|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|+.+
T Consensus 9 ~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 9 SSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFG 88 (116)
T ss_dssp CCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSS
T ss_pred cCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 4455677899999999999999999999999999999999 5575 6999999999999999999999999766
Q ss_pred --CEEEEeeecCCC
Q 004794 83 --HTLHMVVRQPVP 94 (730)
Q Consensus 83 --STLhLVlRlpgg 94 (730)
.+|||++|....
T Consensus 89 ~~~tlhLvlr~~~~ 102 (116)
T 1wgh_A 89 KTTVMHLVARETLP 102 (116)
T ss_dssp CEEEEEEEECSSCS
T ss_pred CceEEEEEccCCCC
Confidence 689999987654
No 50
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=136.72 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++|+.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998763
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.1e-15 Score=143.31 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|+.++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999875
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.60 E-value=1.9e-15 Score=145.79 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=73.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998764
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=1.5e-15 Score=136.15 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=74.9
Q ss_pred CcEEEEEEec---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 17 TTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 17 ~tMqItVKtl---dGKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
..|+|+|+++ +|+++.++|++ ++||.+||++|+.++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 5699999999 89999999998 9999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 004794 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 106 GG 107 (111)
T 1we6_A 106 SG 107 (111)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 54
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.7e-15 Score=136.21 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=67.6
Q ss_pred EEEEEEecC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtld----GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
..|.|+..+ ++++.|+|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|+|++|++| +++++++.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 356666666 7799999999999999999999999999999999999999999999999999999999 66666654
Q ss_pred C
Q 004794 95 S 95 (730)
Q Consensus 95 p 95 (730)
.
T Consensus 95 ~ 95 (100)
T 1wju_A 95 S 95 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.8e-15 Score=131.59 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 11 ~s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
.....++.|+|+||+ .+++|.|+|++++||.+||++|++++++|+++|||+|+||.| |+.+|++|+|+++++|||+.+
T Consensus 10 ~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 10 GGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 344566789999996 689999999999999999999999999999999999999999 555999999999999999987
Q ss_pred cCC
Q 004794 91 QPV 93 (730)
Q Consensus 91 lpg 93 (730)
...
T Consensus 88 ~~~ 90 (95)
T 1v86_A 88 TIS 90 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 56
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=4.9e-15 Score=128.02 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=71.4
Q ss_pred CCCcEEEEEEecCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-chhhccccccCCCEEEEe
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdps-----dTV~dLKekIaektGIPpeqQRLIF~GKvLkD-dkTLsDYGIedGSTLhLV 88 (730)
...+|+|+||+ .++++.++|+++ +||.+||++|++++++|+++|||+|+||.|+| +++|++|+|++|++|||+
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 34579999999 589999999995 99999999999999999999999999999998 568999999999999999
Q ss_pred eecCC
Q 004794 89 VRQPV 93 (730)
Q Consensus 89 lRlpg 93 (730)
.+...
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 87654
No 57
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3e-15 Score=133.78 Aligned_cols=81 Identities=27% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCCCcEEEEEEecCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCCchhhcccc
Q 004794 14 SSETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYH 78 (730)
Q Consensus 14 ~s~~tMqItVKtldG---Kt~tLeVd--------p-sdTV~dLKekIaekt--GIPpeq-QRLIF~GKvLkDdkTLsDYG 78 (730)
.....|+|+||+.++ +++.|+|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|++|+
T Consensus 8 ~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 8 MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred ccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 344569999999998 89999954 4 499999999999999 999999 99999999999999999999
Q ss_pred ccCCCEEEEeeecCCC
Q 004794 79 VEDGHTLHMVVRQPVP 94 (730)
Q Consensus 79 IedGSTLhLVlRlpgg 94 (730)
|++|++|||+++.+..
T Consensus 88 i~~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 88 IQPGSTVHVLRKSWSG 103 (107)
T ss_dssp CCTTCEEEEEESSCCS
T ss_pred CCCCCEEEEEeCCCCC
Confidence 9999999999987653
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=138.75 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCCchhhccccccCCC
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIae------ktGIP--peqQRLIF~GKvLkDdkTLsDYGIedGS 83 (730)
+....+.|.|+||+++|++++|+|++++||.+||++|++ ++++| +++|||||.||+|+|+++|++|+|++++
T Consensus 11 ~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 11 SNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 90 (125)
T ss_dssp CSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS
T ss_pred cCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 334456799999999999999999999999999999999 67874 8999999999999999999999999776
Q ss_pred --EEEEeeecCCC
Q 004794 84 --TLHMVVRQPVP 94 (730)
Q Consensus 84 --TLhLVlRlpgg 94 (730)
+|||++|...+
T Consensus 91 ~~tlhlv~r~~~~ 103 (125)
T 2gow_A 91 TTVMHLVARETLP 103 (125)
T ss_dssp EEEEEEEECSCCS
T ss_pred ceEEEEEecCCCC
Confidence 78999998753
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.58 E-value=3.4e-15 Score=129.47 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=71.9
Q ss_pred CCCcEEEEEEecCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCchhhccccccCCCEEEEeee
Q 004794 15 SETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tL-eVdpsdTV~dLKekIaektGIPpeqQRLI---F~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
.+.+|+|+||+ .|++|.| +|++++||.+||++|++++++|+++|||+ |+||.|+|+.+|++|+|++|++|||+..
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 44679999997 7899999 99999999999999999999999999999 9999999999999999999999999876
Q ss_pred cC
Q 004794 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 60
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=7.2e-15 Score=129.50 Aligned_cols=76 Identities=21% Similarity=0.393 Sum_probs=71.0
Q ss_pred CCCcEEEEEEecCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 15 SETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 15 s~~tMqItVKtldGKt~-tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
...+|+|+||+ .|++| .|+|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|++|++|||+....
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 34679999997 68999 6999999999999999999999999999999999999999 99999999999999998754
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.57 E-value=2.8e-15 Score=138.36 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=64.7
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhcccccc-------CCCEEEEeee
Q 004794 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIe-------dGSTLhLVlR 90 (730)
|+++|+...++ ++.|+|++++||.+||++|+.++|||+++|||+|+||.|+|+++|++|+|+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34444444454 699999999999999999999999999999999999999999999999999 7999999999
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=133.92 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=65.9
Q ss_pred CCCCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCCchhhccc--cccCCCEEEE
Q 004794 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (730)
Q Consensus 14 ~s~~tMqItVKtldGK--t~tLeVdpsdTV~dLKekIaek-tGIP-peqQRLIF~GKvLkDdkTLsDY--GIedGSTLhL 87 (730)
..+..|+|+||+++++ ++.|+|++++||.+||++|+++ .|++ +++|||||+||+|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456699999999998 6789999999999999999997 4666 4999999999999999999999 9999999998
Q ss_pred e
Q 004794 88 V 88 (730)
Q Consensus 88 V 88 (730)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=131.68 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEEE-ecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 11 GAESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 11 ~s~~s~~tMqItVK-tldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
.....+..|.|+|+ ...++.++++++++.||.+||++|+.++++|+++|||+|+||.|+|+.||.+|||++|.||||++
T Consensus 8 ~~~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 8 QESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp CCCCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred hhcccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 34455667899988 66788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 004794 90 RQPV 93 (730)
Q Consensus 90 Rlpg 93 (730)
+...
T Consensus 88 ~s~~ 91 (118)
T 2daf_A 88 FSTN 91 (118)
T ss_dssp EESC
T ss_pred ecCC
Confidence 9755
No 64
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=7e-15 Score=137.10 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=73.0
Q ss_pred CCCCcEEEEEEecCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCCC--CCeEEEeCCeecCCchhhccccccCC---
Q 004794 14 SSETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIA-----SVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG--- 82 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~-tLeVdpsdTV~dLKekIa-----ektGIPp--eqQRLIF~GKvLkDdkTLsDYGIedG--- 82 (730)
..++.|+|+||+++|+++ .+++++++||.+||++|+ ++.++|+ ++|||||.||.|+|+++|++|+|+++
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 344789999999999988 699999999999999994 5567887 89999999999999999999999998
Q ss_pred ---CEEEEeeecCCC
Q 004794 83 ---HTLHMVVRQPVP 94 (730)
Q Consensus 83 ---STLhLVlRlpgg 94 (730)
.++||+++++++
T Consensus 92 ~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 92 GAVTTMHVIIQAPVT 106 (126)
T ss_dssp TCCEEEEEEECCCSS
T ss_pred CCcEEEEEEeccCCc
Confidence 789999998764
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-15 Score=135.10 Aligned_cols=75 Identities=37% Similarity=0.669 Sum_probs=69.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 3568899998 89999999999999999999999999999999999999999999999999999999999999864
No 66
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.56 E-value=5.9e-15 Score=145.60 Aligned_cols=77 Identities=36% Similarity=0.508 Sum_probs=75.0
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999875
No 67
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.55 E-value=4.9e-15 Score=136.79 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=67.3
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccC-------CCEEEEeee
Q 004794 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIed-------GSTLhLVlR 90 (730)
|.|+|+...+| ++.++|++++||.+||++|+.++|+|+++|||||.||+|+|++||++|||++ +++|||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 55666665555 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred c
Q 004794 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=6.6e-15 Score=140.26 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=71.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
..|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|++++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.4e-14 Score=130.91 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.3
Q ss_pred CcEEEEEEec----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEE
Q 004794 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtl----------dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLh 86 (730)
..|+|+|+.. +|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+++|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688999886 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 004794 87 MVVRQPVP 94 (730)
Q Consensus 87 LVlRlpgg 94 (730)
|++++.++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999875
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=1.6e-14 Score=132.60 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=74.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
..|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.54 E-value=1.8e-14 Score=130.63 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccc-cCCCEEEEeee
Q 004794 14 SSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (730)
Q Consensus 14 ~s~~tMqItVKtldG--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGI-edGSTLhLVlR 90 (730)
+.+-.|+|+|+...+ .+++|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++||| ++|++|||++.
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 345568999999875 689999999999999999999999999999999999999999999999999 69999999986
Q ss_pred cC
Q 004794 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 100 ~~ 101 (105)
T 4dbg_A 100 SA 101 (105)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.54 E-value=5.5e-16 Score=142.61 Aligned_cols=76 Identities=37% Similarity=0.553 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=3.4e-14 Score=122.16 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=66.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
.++.+.+ +++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+..
T Consensus 11 ~~~~~~~-~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKLTV-KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEEEE-EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEEEE-EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4455544 458999999999999999999999999999999999999999999999999999999999999864
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.48 E-value=3.2e-15 Score=142.71 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
|+|+|++++|+++.|+|++++||.+||++|++.+++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 75
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.47 E-value=3.5e-14 Score=152.33 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=71.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCCchhhccccccCCCEE-EEeee
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVR 90 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIae---ktGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTL-hLVlR 90 (730)
.+..|+|+||+++|++|.|+|++++||.+||++|++ +++|++++|||+|+||+|+|+++|++|+|++|++| ||+.|
T Consensus 4 ~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp --CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 346799999999999999999999999999999999 56799999999999999999999999999999999 66666
Q ss_pred cCCC
Q 004794 91 QPVP 94 (730)
Q Consensus 91 lpgg 94 (730)
.+++
T Consensus 84 ~~~~ 87 (368)
T 1oqy_A 84 TKAG 87 (368)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5543
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=123.51 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=68.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
.|.++++.+.|+++.|+|++++||.+||++|++++|||+++|||+| .|+ |+|+++|++|+|++|++|||+++...
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 4777777779999999999999999999999999999999999996 456 99999999999999999999987654
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.43 E-value=3.4e-13 Score=119.35 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CCchhhccccccCCCE
Q 004794 13 ESSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHT 84 (730)
Q Consensus 13 ~~s~~tMqItVKtldGK--t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~--GK---vL-kDdkTLsDYGIedGST 84 (730)
-.++..|.|+|+...++ .++++|++++||.+||++|+.++|+|+++|||+|. |+ .| +|+++|++|+|++|++
T Consensus 10 ~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred cCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCE
Confidence 34577899999987664 88999999999999999999999999999999998 55 34 8999999999999999
Q ss_pred EEEe
Q 004794 85 LHMV 88 (730)
Q Consensus 85 LhLV 88 (730)
|||+
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=120.09 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEeC--CeecCCchhhccccccCCCEEEE
Q 004794 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIASV-TGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~~tMqItVKtldGKt~--tL-eVdpsdTV~dLKekIaek-tGIPpeqQRLIF~--GKvLkDdkTLsDYGIedGSTLhL 87 (730)
-.+|+|+||++.|+++ .| +|++++||.+||++|+++ .++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4459999999988775 58 999999999999999994 8999999999976 99999999999999999999876
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.43 E-value=1.4e-13 Score=119.64 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.5
Q ss_pred cEEEEEEe--cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCchhhccccccCCCEEEEe
Q 004794 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 18 tMqItVKt--ldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF-------~GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
.++|.|.. .+.+.+.+++++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 35566653 34567889999999999999999999999999999997 4789999999999999999999999
Q ss_pred eecC
Q 004794 89 VRQP 92 (730)
Q Consensus 89 lRlp 92 (730)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7654
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.41 E-value=3.5e-13 Score=141.64 Aligned_cols=80 Identities=35% Similarity=0.538 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
.+....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|++
T Consensus 228 ~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 228 AGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp ESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred cCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999863
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=5.2e-13 Score=119.60 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=69.0
Q ss_pred CcEEEEEEecCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCCchhhcccccc
Q 004794 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~GK-----------v----LkDdkTLsDYGIe 80 (730)
..|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|||+|.|+ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34999999999976 79999 999999999999999999999999999988 4 5888999999999
Q ss_pred CCCEEEEeeecCC
Q 004794 81 DGHTLHMVVRQPV 93 (730)
Q Consensus 81 dGSTLhLVlRlpg 93 (730)
+|++|||+.....
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987543
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.2e-12 Score=116.45 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe---e----cCCchhhccccccCCCEE
Q 004794 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 15 s~~tMqItVKtldG--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK---v----LkDdkTLsDYGIedGSTL 85 (730)
.+..+.|+|+.... +.++++|++++||.+||++|+.++|||+++|||+|.|+ . ++|+++|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45668899987554 47899999999999999999999999999999999884 3 488999999999999999
Q ss_pred EEeee
Q 004794 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
||+-.
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99853
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.4e-12 Score=114.11 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=67.0
Q ss_pred CCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCchhhccccccCCCEEEE
Q 004794 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~~tMqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G---Kv----LkDdkTLsDYGIedGSTLhL 87 (730)
...|.|+|+..... .+.++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|++|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 34589999986543 689999999999999999999999999999999987 43 58999999999999999999
Q ss_pred eeec
Q 004794 88 VVRQ 91 (730)
Q Consensus 88 VlRl 91 (730)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.3e-12 Score=115.40 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
....|+|+||+.+|+.+.++|.+++++..||++++++.+++++++||+|.|+.|++++|+++|++++|++|++++++.++
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999998876
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.33 E-value=3.8e-12 Score=116.57 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.2
Q ss_pred CcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCchhhccccccCCCEEEEe
Q 004794 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 ~tMqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G---Kv----LkDdkTLsDYGIedGSTLhLV 88 (730)
..|.|+|+..... .+.++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|++|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4689999986553 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred eecC
Q 004794 89 VRQP 92 (730)
Q Consensus 89 lRlp 92 (730)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 7543
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.33 E-value=1.2e-13 Score=136.40 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=0.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++|||+++|||+|.|++|+|+.+|+ +++||||++|+.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999998754
No 87
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.9e-11 Score=110.14 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
....|.|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+++|++++|++|+|++++.++
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 004794 95 S 95 (730)
Q Consensus 95 p 95 (730)
.
T Consensus 101 ~ 101 (104)
T 1wz0_A 101 P 101 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.6e-11 Score=108.16 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=75.2
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
...|+|+|++.+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+++|++++|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998775
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.26 E-value=1.4e-11 Score=108.47 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=73.8
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
....|.|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+++|++++|++|++++++.+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999998765
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=106.47 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=64.7
Q ss_pred EEEEEEecCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---CchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~--GKvLk---DdkTLsDYGIedGSTLhLVlRl 91 (730)
|+|+||+.+|+.. ++ |++++||.+||++|++++++++++|||+|. +|.|+ |+++|++|||.+|++|||....
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 7899999999654 77 999999999999999999999999999987 47774 6799999999999999998664
No 91
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.22 E-value=4.5e-11 Score=108.93 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
+.....|.|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+++|++++|++|+|++.+.
T Consensus 21 ~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 21 KEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 101 Gg 102 (110)
T 2k8h_A 101 GG 102 (110)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 92
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.21 E-value=1.3e-11 Score=130.21 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=68.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCchhhccccccCCCEEEEeeec
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI---F~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+.|+|+||. .|++|.++|++++||.+||++|++++|||+++|||+ |+||.|+|+.+|++|+|++|++|||+...
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 4569999997 799999999999999999999999999999999999 89999999999999999999999998654
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.20 E-value=5.2e-11 Score=107.92 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.......|.|+|+. +|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|.++|++++|++|++++++
T Consensus 25 ~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 25 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 33455779999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 92 PV 93 (730)
Q Consensus 92 pg 93 (730)
.+
T Consensus 104 ~G 105 (106)
T 2eke_C 104 IG 105 (106)
T ss_dssp --
T ss_pred cc
Confidence 65
No 94
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.20 E-value=4.7e-11 Score=99.93 Aligned_cols=71 Identities=17% Similarity=0.350 Sum_probs=69.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
|+|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|.++|++++|++|++++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999974
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.18 E-value=1.1e-10 Score=99.66 Aligned_cols=74 Identities=11% Similarity=0.294 Sum_probs=70.3
Q ss_pred CCCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEe
Q 004794 15 SETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
....|.|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345699999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=9.9e-10 Score=96.21 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCCcEEEEEEe---cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------e-ec-CCchhhccccccCCC
Q 004794 15 SETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------K-VL-KDDQLLSAYHVEDGH 83 (730)
Q Consensus 15 s~~tMqItVKt---ldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G------K-vL-kDdkTLsDYGIedGS 83 (730)
....++|+|++ .+++.+.+.+.+++||.+||.+|+..+|+|+..|||+|.+ . .| +|+++|++|+|++|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 34568888886 4678899999999999999999999999999999999873 2 24 677999999999999
Q ss_pred EEEEeeec
Q 004794 84 TLHMVVRQ 91 (730)
Q Consensus 84 TLhLVlRl 91 (730)
+|||....
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998754
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=1.7e-08 Score=93.01 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=72.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
...|.|+|+..+|+.+.+.|.+++++..|++.++++.|+++..+||+|.|+.|.++.|.++|++++|++|++++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=6e-08 Score=96.73 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=76.1
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
.....|+|+|+. +|+.+.+.|.+++++..||+.++++.|+++.++||+|.|+.|.++.|.++|++++|++|++++.+.+
T Consensus 25 ~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 456779999985 8999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 94 PS 95 (730)
Q Consensus 94 gp 95 (730)
+.
T Consensus 104 g~ 105 (200)
T 3pge_A 104 GG 105 (200)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.66 E-value=3.7e-08 Score=98.01 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
+....|.|+|+. +|+.+.+.|.+++++..||+.++++.|+++..+||+|+|+.|.+++|.++|+++||++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 456779999975 8999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 94 PS 95 (730)
Q Consensus 94 gp 95 (730)
+.
T Consensus 132 G~ 133 (207)
T 3tix_A 132 GL 133 (207)
T ss_dssp TG
T ss_pred CC
Confidence 53
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.37 E-value=4.8e-08 Score=98.35 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=1.0
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
...+...|.|+| ..+|+.+.+.|.+++++..||+.++++.|++++.+|++|+|+.|.+++|.++|+++||++|++++.+
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 344566799999 7789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004794 92 PVPS 95 (730)
Q Consensus 92 pggp 95 (730)
.++.
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 8863
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.22 E-value=5.8e-07 Score=77.17 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=59.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CCchhhccccccCCCEEEEe
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKv---L--kDdkTLsDYGIedGSTLhLV 88 (730)
+.|.|.||+.+| ++.|+|++++||.+||++|+++++++.+.|.|.+.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 348899999876 67788999999999999999999999988877665443 3 47789999999999999874
No 102
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.19 E-value=6.7e-06 Score=73.58 Aligned_cols=77 Identities=12% Similarity=0.320 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEe
Q 004794 12 AESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 12 s~~s~~tMqItVKtldGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLV 88 (730)
..+....|.|+|+..+++ .+.+.|.+++++..|.+..+++.++++...||+|.|..|.++.|..+++++||++|.++
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 344567799999998885 88999999999999999999999999999999999999999999999999999999885
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.08 E-value=1.6e-05 Score=69.23 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.5
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
..|.+.++......+.+.|.++.+|.+|-+....+.+|+++ ..||.|.|..|+.+.++.+|+++||+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45788888888888999999999999999999999999998 99999999999999999999999999999986
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.01 E-value=1.4e-05 Score=79.38 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
.-+...|.|+|+. +++.+.++|..++++..||+.++++.|++++++||+|.|+.+.++++..++.++++++|.++.++.
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 3455779999998 788889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004794 93 VPS 95 (730)
Q Consensus 93 ggp 95 (730)
++.
T Consensus 95 Gg~ 97 (209)
T 3uf8_A 95 GGS 97 (209)
T ss_dssp TCC
T ss_pred ccc
Confidence 754
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.88 E-value=1.8e-06 Score=92.82 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlp 92 (730)
..+...|.|+|+. +|+.+.+.|..++++..||+.++++.|++++.+|++|+|+.|.++.|.++++++||++|++++++.
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 3455679999998 688899999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004794 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 95 g~ 96 (360)
T 3ix6_A 95 GG 96 (360)
T ss_dssp --
T ss_pred ch
Confidence 74
No 106
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.82 E-value=2.6e-06 Score=90.96 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
....|.|+|+. +++.+.+.|..++++..||+.++++.|+++.++|++|.|+.|.+++|.+++++++|++|++++.+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 45668888887 77888899999999999999999999999999999999999999999999999999999999998775
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.81 E-value=0.0001 Score=66.05 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+....|.|+|+. +|..+.+.|..++....|.+..+++.|+.+...|++|.|..+.++.|-.+++++++++|.+++-.
T Consensus 16 ~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 16 PETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3445569999996 78999999999999999999999999999999999999999999999999999999999998743
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.67 E-value=7.7e-05 Score=66.62 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=51.2
Q ss_pred EEEEec-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--CCchhhcccccc-CCCEEEEe
Q 004794 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHVE-DGHTLHMV 88 (730)
Q Consensus 21 ItVKtl-dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvL--kDdkTLsDYGIe-dGSTLhLV 88 (730)
|+|=.+ .++.+.+.|.+++||..||++|++++||++++|+|+|.||.| +.++.-..|--. ...-|.|+
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 444444 467789999999999999999999999999999999999865 445555566432 23444444
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.37 E-value=0.00035 Score=60.80 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=60.8
Q ss_pred CcEEEEEEe--cCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCchhhccccccCCCEEEE
Q 004794 17 TTIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 ~tMqItVKt--ldGKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIF~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
+-|.|+|.. -.++.|.|++....||++|++.+.+.+++.. ...|+.-++..|.+++.|+||+|.+|+.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 346777775 4689999999999999999999999998655 2457778899999999999999999999875
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.27 E-value=0.00032 Score=65.77 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=58.7
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 004794 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (730)
Q Consensus 20 qItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-------------------------------------qQRLI 62 (730)
.|+|+.+||+..++.|+.+.+|.+++..|+.+.||+.. +++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 34443
Q ss_pred eC--CeecCCchhhccccccCCCEEEEee
Q 004794 63 CR--GKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 63 F~--GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
.. ...|+++++|.++||.++++|.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 31 2567888999999999999976643
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.97 E-value=0.0016 Score=57.86 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=70.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
-|.|+|-..+++..++.|.+++++.++-++..+++++.+++-.|.|++|.|+-+..+.-.||-++++|.|+.+...
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999976543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.81 E-value=0.0055 Score=52.36 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CchhhccccccCCCEEEEee
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsDYGIedGSTLhLVl 89 (730)
.+...+|.||..+|+.+.-....++||.+|+..|.. .+.+....+|+ |-.|.|. .+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 456689999999999998899999999999999988 56777888888 5578883 46899999999999988754
No 113
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.59 E-value=4e-05 Score=68.31 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=37.6
Q ss_pred CCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++++ .+|+.+.+.|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 23 qI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 23 EVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 4444 678999999999999999999999 99999999999873
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.57 E-value=0.015 Score=52.41 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--C-chhhccccccCCCEEEEee
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--D-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk--D-dkTLsDYGIedGSTLhLVl 89 (730)
.....+|.||..+|+.+.-.+..++||.+|.+-|....+.+.....|+ |--|.|. | +++|.+.|+.+..+|++..
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 344689999999999999999999999999999999887776777777 5577785 3 6899999999988888776
Q ss_pred ec
Q 004794 90 RQ 91 (730)
Q Consensus 90 Rl 91 (730)
..
T Consensus 90 ~~ 91 (109)
T 2dzk_A 90 AG 91 (109)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 115
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.52 E-value=0.00025 Score=63.85 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=33.7
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+.|++++||..||.+|+ ++|+|+++|||||+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 5678899999999999999999 99999999999977
No 116
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.38 E-value=0.00054 Score=67.91 Aligned_cols=42 Identities=5% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+|++ .+|+++.++|.+++||.+||.+|+ .+|||+++|||||+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp ---------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 4444 568899999999999999999999 99999999999985
No 117
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.32 E-value=7.2e-05 Score=63.40 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=38.1
Q ss_pred ccCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 79 IedGSTLhLVlRlpggp~ss~~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+.++++++++++.+. .+.+++ ..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 2 ~~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 2 MEPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp -------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 345566666665432 344544 567888899999999999999999 89999999999873
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.09 E-value=0.018 Score=53.22 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--CC-chhhccccccCCCEEEEee
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--KD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvL--kD-dkTLsDYGIedGSTLhLVl 89 (730)
.....+|.||..+|+.+.-.+..++||.+|...|... +.+.....|+ |-.|.| .| +++|.++|+.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 4556899999999999999999999999999999887 7777788887 557888 33 6899999999988887764
Q ss_pred e
Q 004794 90 R 90 (730)
Q Consensus 90 R 90 (730)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 119
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.06 E-value=0.00019 Score=64.54 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=35.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||++||.+|+ ++|||+++|||+|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 568889999999999999999999 99999999999977
No 120
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.00045 Score=61.12 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=36.3
Q ss_pred chhhccccccCCCEEEEeeecCCCCCCCCCCCCC-CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 71 dkTLsDYGIedGSTLhLVlRlpggp~ss~~qI~v-~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
...++||.|. +|.+|.++..- .+.+++ ..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCCC--cceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4568889884 56666554321 122333 378888899999999999999999 89999999999874
No 121
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.71 E-value=0.085 Score=47.39 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=61.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--CchhhccccccCCCEEEEeee
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk--DdkTLsDYGIedGSTLhLVlR 90 (730)
....+|.||..+|+.+.-.+..++||.+|..-|..+ +..+...+|+ |-.|.|. .+++|.++||.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 457999999999999988999999999999999865 5566777887 5578885 368999999999988877554
No 122
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.00044 Score=60.20 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=33.5
Q ss_pred CCCCCcccccc--cCCchhcccccc-c-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~--pSdTIe~VK~~I-q-gEGIPpdqQRLIfA 142 (730)
..|+++.+.|+ +++||..||.+| + ++|+|+++|||||+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 56777778755 999999999999 7 89999999999985
No 123
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.19 E-value=0.049 Score=50.40 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCC-chhhccccccCCCEEE
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTLH 86 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaekt-GIPpeqQRLI--F~GKvLkD-dkTLsDYGIedGSTLh 86 (730)
.....+|.||..||+.+.-.+..++||.+|++.|.... +.......|+ |-.|.|.| +++|.++|+.+..+|.
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 44568999999999999999999999999999998864 3455667777 55788865 5899999999855443
No 124
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.10 E-value=0.0037 Score=51.06 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||.+||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 457778899999999999999999 89999999999985
No 125
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=94.83 E-value=0.00067 Score=56.17 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 467888899999999999999999 89999999999874
No 126
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.81 E-value=0.059 Score=47.72 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=61.3
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCCchhhccccccC
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVED 81 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~---GKvLkDdkTLsDYGIed 81 (730)
-++.++++.|....-++..++|+|..++.+|--.|.+++.+.++.-.|.-. +..|+-+++|.||||++
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 356889999999988999999999999999999999999999999888754 45788999999999987
No 127
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.76 E-value=0.0033 Score=54.47 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.7
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+.....+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 334567899999999999999 99999999999963
No 128
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.72 E-value=0.002 Score=56.87 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=32.4
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+.+.+.|.+++||++||.+|+ ++|||+++|||+|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 467789999999999999999 99999999999985
No 129
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.62 E-value=0.15 Score=46.79 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=52.7
Q ss_pred CcEEEEEEecC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----CeecCCc-----------
Q 004794 17 TTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD----------- 71 (730)
Q Consensus 17 ~tMqItVKtld--GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF~----GKvLkDd----------- 71 (730)
.+|.|+|-..+ +..+.+.|-..+||.++|+||.+.. ++| +++..|-+. |+.|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 45777776543 4567888889999999999997764 333 356667663 4566541
Q ss_pred --hhhccccccCCCEEEEeee
Q 004794 72 --QLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 72 --kTLsDYGIedGSTLhLVlR 90 (730)
.||+.|+|.||++|-|+.+
T Consensus 90 rLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEEC
T ss_pred EecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 130
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=94.57 E-value=0.0008 Score=57.15 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.++++|.+||.+|+ ++|||+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 457778899999999999999999 89999999999984
No 131
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.52 E-value=0.0064 Score=55.62 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+++.+.|.+++||.+||.+|+ .+|||+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 467888899999999999999999 89999999999974
No 132
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.52 E-value=0.00084 Score=57.46 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||++||.+|+ .+|+|+++|||+|.
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 89999999999975
No 133
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=94.49 E-value=0.0012 Score=61.13 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=31.5
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.++|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 56789999999999999999 99999999999974
No 134
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.48 E-value=0.0012 Score=61.00 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=31.7
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.++|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 47789999999999999999 99999999999965
No 135
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.46 E-value=0.0025 Score=56.59 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.0
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+.+.+.|.+++||++||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 456789999999999999999 99999999999974
No 136
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.41 E-value=0.07 Score=56.32 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=73.3
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCCchhhccccccCCCEEEE
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektG----IPpeqQRLIF------~GKvLkDdkTLsDYGIedGSTLhL 87 (730)
.+.++|... +.+-++.+++++||.++..+|.++.. .++++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777765 67788999999999999999988874 3566666666 456788899999999999999888
Q ss_pred eeecCCCCCCCCCCCCCCCCCCcccccccCCchhccccc
Q 004794 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLP 126 (730)
Q Consensus 88 VlRlpggp~ss~~qI~v~tGrtitl~V~pSdTIe~VK~~ 126 (730)
..+... ..+.-.+|......|+.+.++..+-..
T Consensus 82 ~~~~~~------~~V~l~dg~~~~~~vd~~tt~~el~~~ 114 (371)
T 3ivf_A 82 RKKQRP------LKIRMLDGTVKTIMVDDSKTVTDMLMT 114 (371)
T ss_dssp EECEEE------EEEECTTSCEEEEEEETTSBHHHHHHH
T ss_pred cCceeE------EEEECcCCCEEEEEECCCCCHHHHHHH
Confidence 654321 112224566666777776666554443
No 137
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.38 E-value=0.0017 Score=58.10 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
.+|+.+.+.|.++++|++||.+|+ ++||||++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 467888899999999999999999 9999999999853
No 138
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.35 E-value=0.14 Score=48.77 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCcEEEEEEecC------CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEe----CCe-ecCCc-----
Q 004794 16 ETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC----RGK-VLKDD----- 71 (730)
Q Consensus 16 ~~tMqItVKtld------GKt~tLeVdpsdTV~dLKekIaekt--GIPp------eqQRLIF----~GK-vLkDd----- 71 (730)
-.+|.|+|-... ...+.+.|-..+||.++|+||.+.. ++|- ++.-|-+ .|+ .|.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 355777776543 2468899999999999999998765 3432 3445544 233 35542
Q ss_pred --------hhhccccccCCCEEEEeeecC
Q 004794 72 --------QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 72 --------kTLsDYGIedGSTLhLVlRlp 92 (730)
.||+.|+|.||++|-|+.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred ccCCceeecchhccCCCCCCEEEEEECCC
Confidence 289999999999999988764
No 139
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.31 E-value=0.0016 Score=54.58 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 467788899999999999999999 89999999999874
No 140
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=94.21 E-value=0.0082 Score=57.28 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||.+||..|+ .+|||+++|||+|.
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 467788899999999999999999 89999999999986
No 141
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.01 E-value=0.0037 Score=54.53 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.++++|..||.+|+ ++|||+++|||+|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 456778899999999999999999 99999999999985
No 142
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.0031 Score=56.07 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.++++|.+||.+|+ ..|||+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457778899999999999999999 99999999999975
No 143
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=93.87 E-value=0.002 Score=55.06 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 567888899999999999999999 89999999999974
No 144
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=93.82 E-value=0.0017 Score=55.46 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+++.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 457778899999999999999999 89999999999874
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.57 E-value=0.0035 Score=54.00 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=34.9
Q ss_pred CCCCC-CCCCCccc-ccccCCchhccccccc-CCCCCcchhHHH
Q 004794 100 THNLP-GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (730)
Q Consensus 100 ~qI~v-~tGrtitl-~V~pSdTIe~VK~~Iq-gEGIPpdqQRLI 140 (730)
+.+++ ..++.+.+ .|.+++||.+||.+|+ .+|||+++|||+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 44444 35677778 9999999999999999 999999999998
No 146
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.36 E-value=0.0048 Score=56.68 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-------CCCC--CcchhHHHHHh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-------gEGI--PpdqQRLIfAv 143 (730)
.+|+++.+.|.+++||.+||.+|+ ++|+ |+++|||||+-
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G 71 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC
Confidence 567889999999999999999998 3575 69999999863
No 147
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.28 E-value=0.003 Score=53.06 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..++.+.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456777899999999999999999 89999999999874
No 148
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.02 E-value=0.0044 Score=55.09 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=31.6
Q ss_pred CCCCCccc--ccccCCchhcccccc-c-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl--~V~pSdTIe~VK~~I-q-gEGIPpdqQRLIfA 142 (730)
..|+.+.+ .|.+++||..||.+| + .+|+|+++|||||+
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 44666556 556999999999999 7 78999999999975
No 149
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=92.98 E-value=0.0025 Score=55.23 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=36.4
Q ss_pred CCCCCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~qI~v~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+++++.+++.+.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 44555346778899999999999999999 89999999999875
No 150
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=92.83 E-value=0.0033 Score=51.99 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.++++|..||.+++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 456778899999999999999999 89999999999875
No 151
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.82 E-value=0.48 Score=47.59 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.0
Q ss_pred EEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-CC----eecCC-chhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-RG----KVLKD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldGK--t~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF-~G----KvLkD-dkTLsDYGIedGSTLhLVl 89 (730)
+.|++...... .+++.++..+||.+||+++.+.++++.+ +.||-. .+ ..|.| +++|.+++|.++..|.|=+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 34455443322 3556789999999999999999999997 688763 32 35665 5899999999999999998
Q ss_pred ecCCC
Q 004794 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
+...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 87654
No 152
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=92.79 E-value=0.0035 Score=53.50 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+|+.+.+.|.+++||.+||.+|+ .+|||+++|||+|.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 46777889999999999999999 89999999999974
No 153
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.70 E-value=0.5 Score=47.04 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.4
Q ss_pred EEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCC-chhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldG--Kt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLI--F-~G--KvLkD-dkTLsDYGIedGSTLhLVl 89 (730)
+.|++..... ..+++.++..+||.+|++++.+.++++.+ +.||- | .+ ..|.| +++|.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 3445544332 23567889999999999999999999997 67875 3 23 35655 5799999999999999988
Q ss_pred ecCCC
Q 004794 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
|...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 86554
No 154
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.61 E-value=0.0035 Score=54.91 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCCc-ccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 107 SRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 107 Grti-tl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
++.+ .+.|.++++|.+||.+|+ .+|||+++|||+|
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 5667 489999999999999999 9999999999996
No 155
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.59 E-value=0.0068 Score=52.06 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.1
Q ss_pred CcccccccCCchhccccccc-CC--CCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gE--GIPpdqQRLIfA 142 (730)
.+.+.|.+++||.+||.+|+ .. |+|+++|||||.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 34556669999999999999 66 999999999975
No 156
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=92.52 E-value=0.0033 Score=51.74 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.2
Q ss_pred CCCCCc-ccc-cccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrti-tl~-V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+ .+. |.+++||++||.+|+ .+|+|+++|||+|.
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346664 788 999999999999999 89999999999874
No 157
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.46 E-value=0.0051 Score=51.90 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=33.2
Q ss_pred CCC-CCccc-ccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tG-rtitl-~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..| +.+.+ .|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346 57788 5999999999999999 89999999999874
No 158
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=92.30 E-value=0.0045 Score=56.16 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..+++.|.+++||..+|.+|+ ++|||+++|||+|.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 567889999999999999999 99999999998754
No 159
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.23 E-value=0.0077 Score=49.82 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..++.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346677889999999999999999 89999999999974
No 160
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=92.08 E-value=0.0045 Score=52.91 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
|++++ ..|+.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 44444 567888899999999999999999 89999999999974
No 161
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.0048 Score=53.70 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.++++|..||.+|+ ..|||+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 567788899999999999999999 89999999999974
No 162
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=92.05 E-value=0.0095 Score=55.31 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-------CCCCC--cchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-------gEGIP--pdqQRLIfA 142 (730)
.+|+++.+.|.+++||.+||.+|+ ++|+| +++|||||+
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 567889999999999999999998 46884 899999986
No 163
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.03 E-value=0.011 Score=55.11 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=33.0
Q ss_pred CCCCCc-ccccccCCchhcccccc-----c-CCCCCc--chhHHHHH
Q 004794 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSA 142 (730)
Q Consensus 105 ~tGrti-tl~V~pSdTIe~VK~~I-----q-gEGIPp--dqQRLIfA 142 (730)
.+|+.+ .+.+.+++||.+||.+| + ++|+|+ ++|||||+
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 456666 58999999999999999 6 899997 89999986
No 164
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.82 E-value=0.0056 Score=53.34 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.4
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+.+.|.+++||..||.+|+ .+|||+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 67789999999999999999 89999999999874
No 165
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=91.77 E-value=0.0082 Score=53.35 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=29.0
Q ss_pred CcccccccCCchhccccccc-C-CCCCc-chhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-G-DGVPS-EISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-g-EGIPp-dqQRLIfA 142 (730)
.+.+.|.+++||..||.+|+ + +|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 45778899999999999999 3 67775 99999985
No 166
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.74 E-value=0.0063 Score=53.86 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ +.|||+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 357778899999999999999999 99999999999974
No 167
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=91.72 E-value=0.0065 Score=50.37 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..++.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 346677889999999999999999 89999999999984
No 168
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.59 E-value=0.0074 Score=49.60 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 346667789999999999999999 89999999999874
No 169
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.44 E-value=0.011 Score=52.01 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.8
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.++|.+++||++||.+|+ +.|||+++|||+|.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4677789999999999999999 99999999999874
No 170
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=91.44 E-value=0.0056 Score=52.37 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 456777889999999999999999 89999999999974
No 171
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.43 E-value=0.007 Score=52.37 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCchhccccccc-C---CCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-g---EGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ . +|||+++|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 346777889999999999999999 5 8999999999874
No 172
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.25 E-value=0.0073 Score=52.64 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
.++.+.+.|.+++||.+||.+|+ ..|||+++|||+|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 45667789999999999999999 9999999999995
No 173
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=91.16 E-value=0.0072 Score=50.34 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-C---CCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-g---EGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 346777889999999999999999 4 8999999999874
No 174
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.15 E-value=0.54 Score=43.58 Aligned_cols=75 Identities=27% Similarity=0.429 Sum_probs=52.2
Q ss_pred CcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCC---------c
Q 004794 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D 71 (730)
Q Consensus 17 ~tMqItVKtld---GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF~-G---K-vLkD---------d 71 (730)
.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++| +++..|-+. | + .|.| .
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 45677765543 3457788889999999999997754 333 245566652 3 3 3443 1
Q ss_pred ----hhhccccccCCCEEEEeeec
Q 004794 72 ----QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 72 ----kTLsDYGIedGSTLhLVlRl 91 (730)
.||+.|+|.||++|-|+.|.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 36899999999999998765
No 175
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=90.95 E-value=0.0061 Score=49.14 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..+|.+|+ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346777889999999999999999 89999999999874
No 176
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=90.81 E-value=0.0082 Score=57.79 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 467788899999999999999999 89999999999975
No 177
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.61 E-value=0.96 Score=42.48 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=51.6
Q ss_pred cEEEEEEec--CCcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCC---------c--
Q 004794 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D-- 71 (730)
Q Consensus 18 tMqItVKtl--dGKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF~-G---K-vLkD---------d-- 71 (730)
++.|+|-.. ++..+.+.|-..+||.++|+||.+.. ++| +++..|-+. | + .|.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 345554432 34567888889999999999997764 333 356677662 3 3 3544 1
Q ss_pred --hhhccccccCCCEEEEeeec
Q 004794 72 --QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 72 --kTLsDYGIedGSTLhLVlRl 91 (730)
.||..|+|.||++|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 37899999999999998764
No 178
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.59 E-value=0.015 Score=50.56 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.2
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46678999999999999999 99999999999984
No 179
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.10 E-value=1.9 Score=37.55 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=49.8
Q ss_pred CcEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCCchhhcccc
Q 004794 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (730)
Q Consensus 17 ~tMqItVKtld------G-Kt~tLeVdpsdTV~dLKekIaektG-I----------PpeqQRLIF~GKvLkDdkTLsDYG 78 (730)
..|+|+||... | +...+++....||.+|.+.+..++. + ......+..+|+.+.. ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 45999999884 3 4677888778999999999987742 1 1234567777877652 677
Q ss_pred ccCCCEEEEee
Q 004794 79 VEDGHTLHMVV 89 (730)
Q Consensus 79 IedGSTLhLVl 89 (730)
|++|+.|.++-
T Consensus 83 L~dGDeV~i~p 93 (98)
T 1vjk_A 83 LKDGDVVGVFP 93 (98)
T ss_dssp CCTTCEEEEES
T ss_pred CCCCCEEEEEC
Confidence 99999998874
No 180
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.02 E-value=1.3 Score=38.78 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCCchhhccc--cccCCCEEEEe
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY--HVEDGHTLHMV 88 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK-----vLkDdkTLsDY--GIedGSTLhLV 88 (730)
...|+|+|.+- -++.|+|.+..+..+|.++|.++.+++++...|.|+.+ ++..+..|.+- .++++ .|.|.
T Consensus 3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~ 79 (83)
T 1oey_A 3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLW 79 (83)
T ss_dssp SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEE
T ss_pred CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEE
Confidence 44588888884 68999999999999999999999999999999999863 23333333332 23344 46666
Q ss_pred ee
Q 004794 89 VR 90 (730)
Q Consensus 89 lR 90 (730)
++
T Consensus 80 C~ 81 (83)
T 1oey_A 80 CE 81 (83)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 181
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=90.02 E-value=0.0043 Score=55.38 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 46677889999999999999999 89999999999874
No 182
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.90 E-value=2.3 Score=34.98 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.6
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.|+|+|.-. .....+++....||.+|.+++ +++++...+..+|+.+..+. -|++|+.|.++--.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 388888774 344567787789999999876 56677778889999886554 68899999887543
No 183
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=89.48 E-value=0.016 Score=51.91 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=43.5
Q ss_pred CEEEEeeecCCCCCCCCCCCCCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 83 STLhLVlRlpggp~ss~~qI~v~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|.|.++.+..... ...-.+|+.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~---~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDK---TEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSS---CSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCccc---cccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 467777776542110 0111578888899999999999999999 89999999999984
No 184
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=89.36 E-value=0.029 Score=55.44 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+++.+.|.+++||.+||.+|+ .+|||+++|||+|.
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 567888899999999999999999 89999999999974
No 185
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=89.33 E-value=0.015 Score=50.37 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346667789999999999999999 89999999999874
No 186
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.93 E-value=0.034 Score=48.10 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=31.3
Q ss_pred CCCCCc--cc-ccccCCchhccccccc--CCCCCcchhHHHHH
Q 004794 105 GTSRSH--GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrti--tl-~V~pSdTIe~VK~~Iq--gEGIPpdqQRLIfA 142 (730)
..|+.. .+ +|.+++||.+||.+|+ ++|+|+++|||+|.
T Consensus 18 ~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 18 AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 344444 36 8999999999999999 48999999999875
No 187
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=88.85 E-value=0.025 Score=49.75 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+.|.++++|.+||.+|+ ..|||++.|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4456789999999999999999 89999999999874
No 188
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=88.83 E-value=0.012 Score=52.73 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456778899999999999999999 89999999999974
No 189
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.79 E-value=0.02 Score=49.22 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=32.7
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5667789999999999999999 89999999999874
No 190
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=88.42 E-value=0.03 Score=49.81 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=40.5
Q ss_pred CCCEEEEeeecCCCCCCCCCCCCCCCCCCccccccc-CCchhccccccc-CCCCCcchhHHHHH
Q 004794 81 DGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 81 dGSTLhLVlRlpggp~ss~~qI~v~tGrtitl~V~p-SdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+...+.|.++.+.. ..|+.+.+.|.+ ++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 24 HPGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp CCSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 33456676665321 146677889998 999999999999 89999999999973
No 191
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=88.31 E-value=0.015 Score=49.50 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=32.9
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.|+.+.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45667789999999999999999 89999999999864
No 192
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.21 E-value=0.024 Score=48.50 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCCcccccccC-----Cchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pS-----dTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+.|.++ .||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45566788885 99999999999 89999999999964
No 193
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=87.87 E-value=0.015 Score=46.77 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.++.+.+.|.++++|..+|..|+ ..|+|++.|||+|.
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 46667789999999999999999 89999999999874
No 194
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.69 E-value=0.034 Score=51.07 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
++.+.+.|.+++||.+||.+|+ +.|||+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5667789999999999999999 89999999999975
No 195
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=87.65 E-value=0.045 Score=49.85 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=30.9
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+...+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 45678999999999999999 99999999999973
No 196
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=87.57 E-value=0.017 Score=46.91 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
|+.+.+.|.++++|..||.+|+ ..|+|++.|||+|.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4566788999999999999999 89999999999864
No 197
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=87.42 E-value=0.026 Score=50.84 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 89999999999874
No 198
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.27 E-value=0.0095 Score=53.83 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=29.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQ 137 (730)
.+|+.+.+.|.+++||++||.+|+ ++|+|++.|
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 678899999999999999999999 888888543
No 199
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=86.95 E-value=1.4 Score=37.19 Aligned_cols=62 Identities=11% Similarity=0.248 Sum_probs=47.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|+|+||....+...+++....||.+|- ++.+++++.--+..+|+.+..+. +.+|++|.++--
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~ 62 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRL 62 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEe
Confidence 788888875555668999999998876 46789998887888899886554 335888887643
No 200
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=86.80 E-value=2.5 Score=37.31 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=43.0
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 004794 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (730)
Q Consensus 14 ~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF~GK 66 (730)
++...|+|++.. +|..+.+.|+++.+..+|.++|.+.+++...+ ..|.|...
T Consensus 2 ~~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 2 PLGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CCSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 344568888877 57899999999999999999999999987654 67888764
No 201
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.59 E-value=2.8 Score=39.33 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=49.2
Q ss_pred CcEEEEEEe---cC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEeC-C---eecC------
Q 004794 17 TTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVLK------ 69 (730)
Q Consensus 17 ~tMqItVKt---ld------GKt~tLeVdpsdTV~dLKekIaek----tGIPp----eqQRLIF~-G---KvLk------ 69 (730)
.++.|+|-. .. ...+.+.|-..+||.++|+||.+. .++|- +++.|-+. | ..|.
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456777766 32 246888999999999999999654 35543 34445442 2 2232
Q ss_pred ----Cc----hhhccccccCCCEEEEee
Q 004794 70 ----DD----QLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 70 ----Dd----kTLsDYGIedGSTLhLVl 89 (730)
+. .||+.|+|.||++|-|+.
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 22 368899999999998875
No 202
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.21 E-value=0.05 Score=47.88 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.3
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+.+.|.++++|..||.+|+ ..|||+++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5688999999999999999 89999999999875
No 203
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=85.92 E-value=0.042 Score=48.88 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCCCcccccc-cCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~-pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+|+. .++|. +++||.+||.+|+ +.|||+++|||++.
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 3443 57889 9999999999999 89999999999754
No 204
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=85.81 E-value=0.057 Score=47.45 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.4
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999874
No 205
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.23 E-value=1.9 Score=37.69 Aligned_cols=70 Identities=6% Similarity=0.035 Sum_probs=45.1
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 12 AESSETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 12 s~~s~~tMqItVKtldGKt~tLeVdps-dTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+.-....|+|+| +|+.+. +... .||.+|.+++ +++++...+..+|+.+..+ .+.++-|++|+.|-++--
T Consensus 14 ~~~~~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 14 SGHIGGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp --------CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE
T ss_pred CCCCCcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc
Confidence 334556677766 566544 5665 8999998876 5667777788899887543 445667999999998864
Q ss_pred c
Q 004794 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 84 V 84 (87)
T 1tyg_B 84 V 84 (87)
T ss_dssp C
T ss_pred c
Confidence 3
No 206
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.15 E-value=1.4 Score=40.05 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=50.0
Q ss_pred CcEEEEEEecC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCch---hh-
Q 004794 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (730)
Q Consensus 17 ~tMqItVKtld------G--Kt~tLeVdp---sdTV~dLKekIaektGIPpeqQRLIF~-GK------vLkDdk---TL- 74 (730)
.+|+|+|+... + +.+.+++.. ..||.+|.+.|.+++ +..+.+|+.. |+ +|-|+. .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 45999999884 2 366788873 369999999998876 2223333322 32 222222 33
Q ss_pred -ccccccCCCEEEEeeecCCC
Q 004794 75 -SAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 75 -sDYGIedGSTLhLVlRlpgg 94 (730)
.+|-|++|+.|.++-...++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 36889999999998776665
No 207
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=84.80 E-value=2.6 Score=34.81 Aligned_cols=68 Identities=7% Similarity=0.205 Sum_probs=45.6
Q ss_pred EEEEEEecCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldG-Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
|.|+||.... +.-.+++ ...||.+|++.+..+.++.. ....+..+|+.+.+ .++-|++|+.|.++-..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 6788887742 1133566 56899999999986543322 44566777876543 35678999999987543
No 208
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=84.20 E-value=0.035 Score=49.54 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAv 143 (730)
.....+.+.+.+.++|..||..|+ ++|||+++|+|+|.-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345667789999999999999999 999999999999865
No 209
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=84.19 E-value=6.8 Score=32.99 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=42.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C-----C-----CCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTG-V-----L-----SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-I-----P-----peqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+...+++....||.+|++.+..++. + . ....++..+|+.... ++-|++|+.|.++-..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCC
Confidence 5677888778899999999988753 1 0 012567778877654 5678999999987543
No 210
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.99 E-value=5.7 Score=35.76 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCchhh----ccccccC
Q 004794 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLL----SAYHVED 81 (730)
Q Consensus 13 ~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF-------~GKvLkDdkTL----sDYGIed 81 (730)
+.+...+-|+|-..||....|.|+..+|+.++-+++..+.++..+.-.-+| --+.|+|+..| ..+.+..
T Consensus 4 ~~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s 83 (100)
T 1wgr_A 4 GSSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGG 83 (100)
T ss_dssp CCCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSS
T ss_pred cccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCC
Confidence 344556788888899999999999999999999999999987654432222 23678888554 4556666
Q ss_pred CCEEEEeeecCC
Q 004794 82 GHTLHMVVRQPV 93 (730)
Q Consensus 82 GSTLhLVlRlpg 93 (730)
...|.+..|..+
T Consensus 84 ~nr~~F~kr~~K 95 (100)
T 1wgr_A 84 DSRFVFRKNFAS 95 (100)
T ss_dssp CCEEEECSCCSS
T ss_pred CcEEEEecchhc
Confidence 778777666443
No 211
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=82.05 E-value=3.4 Score=47.60 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=52.1
Q ss_pred CCcEEEEEEecCC------cEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEeC----Ce-ecCCc-----
Q 004794 16 ETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLICR----GK-VLKDD----- 71 (730)
Q Consensus 16 ~~tMqItVKtldG------Kt~tLeVdpsdTV~dLKekIaekt--GIPp------eqQRLIF~----GK-vLkDd----- 71 (730)
-.+|.|+|-..+| ..+.+.|-..|||.++|+||-+.. ++|- ++..|-+. |+ .|.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 3457777765432 457888999999999999998653 3332 44555542 33 35442
Q ss_pred --------hhhccccccCCCEEEEeeecCC
Q 004794 72 --------QLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 72 --------kTLsDYGIedGSTLhLVlRlpg 93 (730)
.||++|+|.||++|-|+.+...
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 3799999999999999877643
No 212
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.49 E-value=0.077 Score=45.53 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=29.9
Q ss_pred CCCCCcccccccCCchhcccccccCCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~IqgEGIPpdqQRLIfA 142 (730)
..++.+.+.|.++++|.+||.+|+..- +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST--TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC--cCcEEEEEC
Confidence 446677889999999999999999333 899999974
No 213
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=81.27 E-value=0.086 Score=55.69 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.6
Q ss_pred CCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 99 ~~qI~v--~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+++++ ..++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 344444 567888899999999999999999 89999999999975
No 214
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.60 E-value=0.1 Score=46.18 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.5
Q ss_pred cccC-Cchhccccccc-CC--CCCcch-hHHHHH
Q 004794 114 VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (730)
Q Consensus 114 V~pS-dTIe~VK~~Iq-gE--GIPpdq-QRLIfA 142 (730)
|.++ +||..||.+|+ .+ |+|+++ |||+|.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 5565 99999999999 77 999999 999864
No 215
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=79.22 E-value=0.1 Score=56.22 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhcccccccC----CCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDRG----DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iqg----EGIPpdqQRLIfA 142 (730)
..|+.+.+.|.+++||.+||.+|+. +|||+++|||||.
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 4577888999999999999999983 6899999999986
No 216
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=78.62 E-value=6.9 Score=39.50 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=52.2
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCCchhhccccccCCCEEEEeee
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF---~GK--vLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+|.|.|..+|| ++.+.|++..|+.+|-++|..+.++...+ .=|.| +|. .|+.++.|.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47899999998 68899999999999999999999986533 34444 232 466677777766555544444444
No 217
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=78.51 E-value=3.9 Score=36.16 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=54.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+.-.++-..++..||+.++.+.++.-+.-.+...+..|+++++|-|-+|+-...+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4456778899999999999999999999999999988999999999999988888887764
No 218
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=77.43 E-value=5 Score=41.23 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=53.6
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCCchhhccccccCCCE
Q 004794 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHT 84 (730)
Q Consensus 11 ~s~~s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF~---G--KvLkDdkTLsDYGIedGST 84 (730)
..++....|.++|..+||....+.|++..|+.+|-++|.++.++...+ .=|.|. | ..|+.++.|.+.......+
T Consensus 10 ~~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~ 89 (296)
T 3qij_A 10 GRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWN 89 (296)
T ss_dssp -------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCE
T ss_pred cCCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcE
Confidence 355667789999999999999999999999999999999999986533 445543 2 2466677777764433445
Q ss_pred EEEeee
Q 004794 85 LHMVVR 90 (730)
Q Consensus 85 LhLVlR 90 (730)
+++-++
T Consensus 90 l~frvk 95 (296)
T 3qij_A 90 FTFNVK 95 (296)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 555443
No 219
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=76.66 E-value=6.9 Score=40.02 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=54.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe--CCe--ecCCchhhccccccCCCEEEEeee
Q 004794 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF--~GK--vLkDdkTLsDYGIedGSTLhLVlR 90 (730)
...|.+.|..+|| ++.+.|++++|+.+|-++|..+.++... -.-|.| +|. .|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4668999999998 7889999999999999999999998753 234544 342 467778888876655554444444
No 220
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=76.41 E-value=8.7 Score=32.67 Aligned_cols=72 Identities=6% Similarity=0.041 Sum_probs=45.4
Q ss_pred EEEEEEecC------CcEEEEEecCCCCHHHHHHHHHHHhCC------C-------CCCeEEEeCCeecCCchhhccccc
Q 004794 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTGV------L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (730)
Q Consensus 19 MqItVKtld------GKt~tLeVdpsdTV~dLKekIaektGI------P-------peqQRLIF~GKvLkDdkTLsDYGI 79 (730)
|+|+|+... |+...+++ ...||.+|++.+..++.- . ....++..+|+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667777763 33334665 457999999999887520 1 013566677776653222 25679
Q ss_pred cCCCEEEEeeecC
Q 004794 80 EDGHTLHMVVRQP 92 (730)
Q Consensus 80 edGSTLhLVlRlp 92 (730)
++|+.|.++-...
T Consensus 79 ~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 79 ADGDSVTILPAVA 91 (93)
T ss_dssp CTTCEEEEEECCT
T ss_pred CCCCEEEEECCCC
Confidence 9999999885443
No 221
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.30 E-value=9.6 Score=33.60 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=45.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCe----ecCCchhhccccccCCCEEEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK----VLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~GK----vLkDdkTLsDYGIedGSTLhL 87 (730)
..|+|+|-. ++..|.|.|..+.+..+||.+|..+..+ +...|+ |++. .|.++..|.. -|+..+.|.|
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISV 82 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEE
Confidence 558888866 4678999999999999999999999988 344444 4432 3444444322 2444444443
No 222
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=75.94 E-value=12 Score=33.86 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEEEEecCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCe---ecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGK---VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldG---Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF~GK---vLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+.|+|..++. ..++++|..+.-|.-|.-+|-++..++. .+--|-..-| +|+-..+|..|||+.++.|++.-.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 6777777554 5688999999999999999998887655 3344444332 578889999999999999998753
No 223
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=75.34 E-value=0.12 Score=43.81 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=29.6
Q ss_pred CCCCCcccc-cccCCchhccccccc-CCCCCcchhHHHH
Q 004794 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~-V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
.+|+.. +. +.+++||.+||..|+ +.|||+++|||+|
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 344433 45 889999999999999 8999999999974
No 224
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=75.11 E-value=10 Score=39.85 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCC---------eecCCchhhccccccCCCEEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF~G---------KvLkDdkTLsDYGIedGSTLh 86 (730)
..+.++|..+||....+.|+...|+.+|-++|+.+.++.. +..-|.+.. +-|+.+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 3478889999999999999999999999999999999764 334555532 234445566665555555555
Q ss_pred Eeee
Q 004794 87 MVVR 90 (730)
Q Consensus 87 LVlR 90 (730)
+.++
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
No 225
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=75.02 E-value=7.2 Score=31.45 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
+|+.+ ++....||.+|.+++ +++++...+..+|+.+..+ ...++-+++|+.|.++--.
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56654 456678999999877 5667777788888877533 3445678999999887543
No 226
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=74.83 E-value=19 Score=31.24 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=43.0
Q ss_pred EEEEEEecC-------C-cEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEE---EeCCe------ecCCch---hh--
Q 004794 19 IEIKIKTLD-------S-QTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRL---ICRGK------VLKDDQ---LL-- 74 (730)
Q Consensus 19 MqItVKtld-------G-Kt~tLeVd--psdTV~dLKekIaektGIPpeqQRL---IF~GK------vLkDdk---TL-- 74 (730)
|+|+|+... | +...+++. ...||.+|++.+.+++.-. ..++ .-+|+ ++-|+. .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~--~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~ 79 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINN--PNDVSIFIEDDSIRPGIITLINDTDWELEGE 79 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSS--GGGHHHHEETTEECTTEEEEETTEEGGGGTG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchh--hHHHhhhccCCccccCeEEEECCEEccccCC
Confidence 788888763 2 45667776 5789999999999886311 1111 11221 222222 22
Q ss_pred ccccccCCCEEEEeee
Q 004794 75 SAYHVEDGHTLHMVVR 90 (730)
Q Consensus 75 sDYGIedGSTLhLVlR 90 (730)
.++-|++|+.|.++-.
T Consensus 80 ~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 80 KDYILEDGDIISFTST 95 (99)
T ss_dssp GGCBCCTTCEEEEEEC
T ss_pred CCcCcCCCCEEEEECC
Confidence 3678999999988743
No 227
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=74.20 E-value=0.22 Score=52.56 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=32.7
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIf 141 (730)
.|+.+.+.|.+++||..||.+|+ ++|||+++|+||+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 35677889999999999999999 9999999999994
No 228
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=73.55 E-value=9 Score=31.47 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=38.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-----IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+.+.++ ....||.+|++.+..++. +......+..+|+.... ++-|++|+.|.++-.
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPP 77 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCC
Confidence 345555 566799999999875531 22334567788887642 567899999998743
No 229
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=73.29 E-value=9.5 Score=43.91 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=53.3
Q ss_pred CCcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----Ce-ecCC---------
Q 004794 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GK-VLKD--------- 70 (730)
Q Consensus 16 ~~tMqItVKtld---GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF~----GK-vLkD--------- 70 (730)
-.+|.|+|-..+ ...+.+.|-..|||.++|+||-+.. ++| +++..|-+. |+ .|.|
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 345777776554 3568889999999999999997764 333 345556542 33 3443
Q ss_pred c----hhhccccccCCCEEEEeeecC
Q 004794 71 D----QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 71 d----kTLsDYGIedGSTLhLVlRlp 92 (730)
+ .||++|+|.||++|-|+.+..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 1 378999999999999988763
No 230
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=72.98 E-value=7.9 Score=32.42 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=44.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
+|+.+.+ ...||.+|.+ ..+++++..-+.++|+.+.. ..+.++-|++|+.|.++--..++
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 6776554 5689988876 45788888888899988743 35667789999999998765553
No 231
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.31 E-value=3 Score=38.80 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC
Q 004794 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR 64 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~ 64 (730)
..+.|..++|+.+||+.|++.+|+|+++|||-+-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678999999999999999999999999998643
No 232
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.42 E-value=13 Score=32.31 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=44.2
Q ss_pred cEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCCchh
Q 004794 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (730)
Q Consensus 18 tMqItVKtld------G-Kt~tLeVdpsdTV~dLKekIaektG-IPp---------eqQ-------RLIF~GKvLkDdkT 73 (730)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+..... .
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~ 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-E 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-T
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-C
Confidence 5889999874 2 344444 6899999999988742 111 012 566777655322 1
Q ss_pred hccccccCCCEEEEeee
Q 004794 74 LSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 74 LsDYGIedGSTLhLVlR 90 (730)
-.++-|++|+.|.++-.
T Consensus 79 ~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 79 GLETLLKDSDEIGILPP 95 (99)
T ss_dssp STTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCEEEEECC
Confidence 23567899999988743
No 233
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.96 E-value=10 Score=42.91 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC---C--eecCCchhhccccccCCCEEEEeee
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF~---G--KvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
..|.|.|..+|| ++.|.|++.+|+.+|-..|+...|+.-. -.-|.|. | ..|+.+++|.+.+++.+..+.|.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468999999998 6789999999999999999999998653 3455553 2 2567778888877766655555544
Q ss_pred c
Q 004794 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 3
No 234
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.76 E-value=1.6 Score=39.62 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=46.2
Q ss_pred CcEEEEEEecC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEeC-C--e------ecCCch---hh
Q 004794 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLICR-G--K------VLKDDQ---LL 74 (730)
Q Consensus 17 ~tMqItVKtld------GKt~tLeVdp----sdTV~dLKekIaektGIPpeqQRLIF~-G--K------vLkDdk---TL 74 (730)
+.|+|+||+.. |+.+.+++.. ..||.+|-+.|.+.+ +..+-+|+.. | + +|-|++ .|
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 34888888875 3555666663 259999888888775 2223344322 4 2 343332 22
Q ss_pred --ccccccCCCEEEEeeecCC
Q 004794 75 --SAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 75 --sDYGIedGSTLhLVlRlpg 93 (730)
.+|-|++|++|.++-...+
T Consensus 81 ~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCC
T ss_pred CCcccCCCCcCEEEEeCCCcc
Confidence 3588999999888655444
No 235
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=67.15 E-value=18 Score=32.82 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=53.1
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCe--ecCCchhhccccccCCCEEEEee
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI---F~GK--vLkDdkTLsDYGIedGSTLhLVl 89 (730)
+...+-..|-..+...+++.+....|+.+|+..++++.+...+.+.|+ ++|. +|+++..--.-.+.-...|++..
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 334455677777888889999999999999999999999876678775 6674 34554433222344456666665
Q ss_pred e
Q 004794 90 R 90 (730)
Q Consensus 90 R 90 (730)
|
T Consensus 86 k 86 (104)
T 1wgy_A 86 K 86 (104)
T ss_dssp C
T ss_pred h
Confidence 5
No 236
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=66.71 E-value=9.6 Score=31.08 Aligned_cols=56 Identities=4% Similarity=0.150 Sum_probs=40.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ--RLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
+...+++....||.+|++.+...+.- .... .+..+|+.+.. ++-+++|+.|.++--
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 35566777778999999999876420 1233 67788887764 367899999988743
No 237
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=64.11 E-value=12 Score=31.73 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=46.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCCchhhccccccCCCEEEEeeecCCC
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIP-peqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRlpgg 94 (730)
|+|+| +|+.+.+......||.+|.+++ +++ ++..-+.++|+.+..+ ...++-|++|+.|.++--..++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 45544 5775543211568999987754 677 7777788999887433 4566779999999998766554
No 238
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=60.71 E-value=16 Score=29.26 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.7
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeeec
Q 004794 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 26 ldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
.+|+.+.+ ...||.+|.+++ +++++...+..+|+.+..+ ...++-+++|+.|.++--.
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 36776654 568999999877 4556667778888877432 3445678999999988543
No 239
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=59.02 E-value=29 Score=35.84 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=41.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eec-CCchhhccccc
Q 004794 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVL-KDDQLLSAYHV 79 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G-KvL-kDdkTLsDYGI 79 (730)
-....+.+.+..|+.+||++|++.++++++.|.|+|.+ +.. +..+....|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 45567888999999999999999999999999999998 433 33344555543
No 240
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=58.37 E-value=21 Score=32.10 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=36.7
Q ss_pred EEEEEEecC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCC
Q 004794 19 IEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRG 65 (730)
Q Consensus 19 MqItVKtld-------GKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIF~G 65 (730)
|+|+|...+ +..+.|-|.++.+..+|..+|.++++++. ...+|-|+.
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 788888753 45789999999999999999999988642 224666665
No 241
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=55.74 E-value=0.63 Score=40.79 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAvl 144 (730)
.+++.+.+.|+++.++..||.... +.|++++++||+|.--
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 55 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 55 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 456778899999999999999988 8999999999998633
No 242
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=53.51 E-value=18 Score=28.92 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|.|+|+..+|+. +++....|+.+|-+.|..... ....-...+|+...- ++-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 567777777876 456678999999888743221 111223457775543 366778888887753
No 243
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=52.73 E-value=13 Score=43.04 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-ecCCchhhccc
Q 004794 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (730)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK-vLkDdkTLsDY 77 (730)
..+.+.+.+.++.|+.+||..|++.++|+++.|.|++... .+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3566778899999999999999999999999999999854 45555555554
No 244
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.63 E-value=0.64 Score=43.16 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=32.2
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
+..+...+.++.+|.+||..+. ..++|+++|||||+
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 4556788999999999999988 88999999999987
No 245
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.51 E-value=28 Score=39.00 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=60.1
Q ss_pred CCCCcEEEEEEecCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C--eecC-Cchhhccc--c
Q 004794 14 SSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G--KVLK-DDQLLSAY--H 78 (730)
Q Consensus 14 ~s~~tMqItVKtldG--Kt~t----LeVdpsdTV~dLKekIaektGIPpeqQRLIF~----G--KvLk-DdkTLsDY--G 78 (730)
.....+-|++|..|- +++. +-|+.+.+|.+|-..|.++.|+|++.--++|. + ..|+ .+.+|.++ .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 344569999998863 3443 57889999999999999999999976555554 2 3466 57899999 9
Q ss_pred ccCCCEEEEeeec
Q 004794 79 VEDGHTLHMVVRQ 91 (730)
Q Consensus 79 IedGSTLhLVlRl 91 (730)
|.+|++|.+=...
T Consensus 206 L~~GdII~fQ~~~ 218 (530)
T 2ylm_A 206 LMDGDIIVFQKDD 218 (530)
T ss_dssp CCTTEEEEEEECC
T ss_pred ccCCCEEEEEecC
Confidence 9999998776543
No 246
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=45.13 E-value=63 Score=26.74 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=38.2
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektG------I-----PpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
++++...||.+|.+.+..++. + ......+..+|+.+... .-.++-|++|+.|.++-.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCC
Confidence 456556899999999987742 1 01345677788766422 224567999999988743
No 247
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=42.93 E-value=17 Score=40.69 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004794 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLI 62 (730)
..++|..++|+.+||++|++.+|+++++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 36789999999999999999999999999985
No 248
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.66 E-value=7.1 Score=33.54 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=31.3
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+......+.++.||..||.+|+ ..|+|+..|+|.+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 34556678889999999999999 89999999999753
No 249
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=42.26 E-value=56 Score=30.37 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCe--ecCCchhhccccccCCCEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe------qQRLI---F~GK--vLkDdkTLsDYGIedGSTL 85 (730)
..+-..|-..+...+++.+....|+.+|+..++++.+...+ .+.|+ +.|. +|+++..--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 44667777777788889999999999999999999987544 67664 6774 4555433222223334566
Q ss_pred EEeee
Q 004794 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
++..|
T Consensus 88 fvc~k 92 (120)
T 2dhz_A 88 FACTR 92 (120)
T ss_dssp EEECT
T ss_pred EEeeh
Confidence 66655
No 250
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=42.20 E-value=9.4 Score=35.10 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=54.4
Q ss_pred CCCCCc--EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEeCC--e-ecCCchhhccccccCCCEE
Q 004794 13 ESSETT--IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLICRG--K-VLKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 13 ~~s~~t--MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe--qQRLIF~G--K-vLkDdkTLsDYGIedGSTL 85 (730)
...+.. ++|+|..++ ..++++|..+.-|..|.-+|-++..++-+ +--|-.-- + +|+-..+|..|||+.++.+
T Consensus 19 ~~~d~SWeL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L 97 (112)
T 2lgx_A 19 CYADGTWELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKL 97 (112)
T ss_dssp SSSSSCCCEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBB
T ss_pred ccccCcEEEEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccc
Confidence 334444 555565544 77889999999999999999988776542 22233222 2 5688899999999999988
Q ss_pred EEeee
Q 004794 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
++.-.
T Consensus 98 ~ftp~ 102 (112)
T 2lgx_A 98 QFTPQ 102 (112)
T ss_dssp CBBC-
T ss_pred eecCC
Confidence 87643
No 251
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=41.67 E-value=28 Score=31.10 Aligned_cols=59 Identities=8% Similarity=0.240 Sum_probs=41.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecCC------chhhccccccCCCEEEEe
Q 004794 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLKD------DQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpe-----------qQRLIF~G-KvLkD------dkTLsDYGIedGSTLhLV 88 (730)
...++|++++|+.+|-+.+.+.-.+-.. ...|++.. ..|+. +++|.++|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 3568899999999999999985332211 33444444 23432 477999999999999884
No 252
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=41.53 E-value=40 Score=31.68 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----CC--chhhccccccCCCEEEEee
Q 004794 38 QVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 38 sdTV~dLKekIaektGIPpeqQRLIF--~GKvL-----kD--dkTLsDYGIedGSTLhLVl 89 (730)
..|+.+|-+.|..++|+.- +.-++- ..+.| +| +++|.++||++|+.|.++=
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 5799999888988998763 444432 23444 22 4899999999999998864
No 253
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=40.17 E-value=51 Score=36.52 Aligned_cols=47 Identities=4% Similarity=0.063 Sum_probs=40.5
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEe
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLIC 63 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF 63 (730)
..|.+.|..+||....+.|+...|+.+|-+.|..+.|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4589999999999999999999999999999999999974 3445554
No 254
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=38.65 E-value=1.3 Score=36.44 Aligned_cols=38 Identities=3% Similarity=-0.082 Sum_probs=32.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+.+.+.|+++.++..++.... +.|+++.++||+|.
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 456677889999999999998877 89999999999886
No 255
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=37.48 E-value=62 Score=28.69 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=50.2
Q ss_pred CcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHH--Hh-CCCCCCeEEEeCCeecCCchhhccccccCCCEEEEeee
Q 004794 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIAS--VT-GVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 ~tMqItVKtld---GKt~tLeVdpsdTV~dLKekIae--kt-GIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
.+|+|.|...- .+.+.+++....||.++-+..-- ++ .|......+..+|+..+ .++-+++|+.|-++--
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 46777776553 23456788899999998887743 22 45555678888888776 4566899999998765
Q ss_pred cC
Q 004794 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 86 l~ 87 (97)
T 2hj1_A 86 LL 87 (97)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 256
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=35.89 E-value=1.7e+02 Score=26.32 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=40.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEE--eCCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpe--qQRLI--F~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
=-++|+..+.+. ..-|- -.+..+|+.|..++++++.. ..+|+ ..|..++|+.-+..+ +..|+.+++..
T Consensus 19 kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~~ 90 (100)
T 1f2r_I 19 KPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALAC 90 (100)
T ss_dssp EEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEECS
T ss_pred CCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEcC
Confidence 445566333333 43332 35799999999999999652 34544 568888776543332 34555555543
No 257
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=35.40 E-value=74 Score=28.00 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=32.3
Q ss_pred CcEEEEEEecCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 004794 17 TTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (730)
Q Consensus 17 ~tMqItVKtldGKt~-tLeVd-psdTV~dLKekIaektGIPpeqQRL 61 (730)
.+..|+-|+...+.+ ++.++ ...+|.+||++|..+.++...+.-|
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 455677787766554 47777 5689999999999988775444433
No 258
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=35.35 E-value=1.3 Score=37.34 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=32.7
Q ss_pred CCCC-CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGr-titl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+|+ .+.+.|+++.++..|+.... +.|++++++||+|.
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 4564 67899999999999999877 89999999999885
No 259
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=34.00 E-value=14 Score=30.74 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.6
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCchhhccccccCCCEEEEee
Q 004794 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTLhLVl 89 (730)
+++....||.+|.+.+ +++.+...+..+|+.+..+ +-|++|+.|.++-
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 4556678999998766 4666677788899888654 6688888887764
No 260
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=33.05 E-value=2.4e+02 Score=24.85 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=54.5
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHh-C--CCC--CCeEEEeCCee--cCCchhhccccccCCCEEEEee
Q 004794 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVT-G--VLS--EQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtldGK-t~tLeVdpsdTV~dLKekIaekt-G--IPp--eqQRLIF~GKv--LkDdkTLsDYGIedGSTLhLVl 89 (730)
+-|..++.+.- ..-+.|+..+|+.++-++++... | +.+ .-.|..++|.. |.++.++++-||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 45566664333 34468999999999999998753 3 322 35788899987 9999999999999999988875
No 261
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.10 E-value=1e+02 Score=27.35 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=44.1
Q ss_pred EEEEEEecC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCchhhccccccCCCEEEEeeec
Q 004794 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtld-GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsDYGIedGSTLhLVlRl 91 (730)
--++|+..+ .+.+-|-+ .+..+|+.|..+++.++....+|+. +|..++|+.-+..+ +..|+.+++..
T Consensus 10 kpfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 345555544 23344433 4799999999999999766666664 58888877654443 35677777664
No 262
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=30.95 E-value=4.6 Score=36.60 Aligned_cols=38 Identities=3% Similarity=-0.013 Sum_probs=33.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfA 142 (730)
.+++.+.+.|+++.++..|+.... +.|++++++||+|.
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 356677899999999999999887 89999999999985
No 263
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=30.86 E-value=2.5 Score=36.84 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAvl 144 (730)
.+|+.+.+.|+++.++..|+.... +.|++++++||+|.--
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 53 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 53 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 456778899999999999999887 8999999999998633
No 264
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=28.22 E-value=1.8e+02 Score=30.15 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=50.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCchhhcc----ccccCCCEE
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA----YHVEDGHTL 85 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-------GKvLkDdkTLsD----YGIedGSTL 85 (730)
..+-|+|-..+|....|.|++++|+.+|-+.+..+.++....-..+|. -+.|+|...|.+ ........|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 345677777789999999999999999999999888765544333332 257777766544 344455565
Q ss_pred EEe
Q 004794 86 HMV 88 (730)
Q Consensus 86 hLV 88 (730)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 265
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=28.04 E-value=2.2e+02 Score=25.04 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=37.4
Q ss_pred CCcEEEEEEecCCcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004794 16 ETTIEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 16 ~~tMqItVKtldGKt~tLeVd--psdTV~dLKekIaektGIPpeqQRLIF~G 65 (730)
...++|+.|. +.....+.++ ...+.++|+.+|+....++.....|.|..
T Consensus 4 ~~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CCEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 3557788877 5566566665 45899999999999999877777888865
No 266
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=27.14 E-value=2e+02 Score=25.28 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=52.2
Q ss_pred EEEEecCCc-EEEEEecCCCCHHHHHHHHHHHh-C--CCC---CCeEEEeCC--eecCCchhhccccccCCCEEEEeee
Q 004794 21 IKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVT-G--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 21 ItVKtldGK-t~tLeVdpsdTV~dLKekIaekt-G--IPp---eqQRLIF~G--KvLkDdkTLsDYGIedGSTLhLVlR 90 (730)
|.-++.+.- ..-+.|+..+|+.++-++++... | +.+ .-.|..++| +.|..+.|+++-||+.-..|.+...
T Consensus 4 l~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 4 IMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEETTCSBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred eeEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 444443322 24468999999999999998753 3 322 246788999 8899999999999999988887653
No 267
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=26.92 E-value=3.4 Score=35.92 Aligned_cols=40 Identities=3% Similarity=-0.124 Sum_probs=33.6
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhhh
Q 004794 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (730)
Q Consensus 106 tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAvl~ 145 (730)
+++.+.+.|.++.++..|+.... +.|++++++||+|.--.
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 45667789999999999999887 89999999999886433
No 268
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=25.04 E-value=1.1e+02 Score=27.85 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=50.0
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC-CC-------CCCeEEEe---CCe--ecCCc-hhhcccccc
Q 004794 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VL-------SEQQRLIC---RGK--VLKDD-QLLSAYHVE 80 (730)
Q Consensus 15 s~~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektG-IP-------peqQRLIF---~GK--vLkDd-kTLsDYGIe 80 (730)
.+..+.|.+=..+|-.+.++|..+.|+.+||+.+.+... .| ++.-.+.+ .+. .|.|+ +.|.|+...
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 346677777788999999999999999999999977643 21 12222222 122 46554 788887665
Q ss_pred CCCEEEEeee
Q 004794 81 DGHTLHMVVR 90 (730)
Q Consensus 81 dGSTLhLVlR 90 (730)
-..|.|+-|
T Consensus 96 -~piLklver 104 (108)
T 2v1y_A 96 -QPFLKVIEP 104 (108)
T ss_dssp -SSEEEEECC
T ss_pred -ceEEEEEee
Confidence 455666554
No 269
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=24.26 E-value=2.1e+02 Score=25.20 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=52.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCchhhccccccCCCEEEEeeecCC
Q 004794 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYGIedGSTLhLVlRlpg 93 (730)
..|.|........+-+-.++++.+++..--+|.+ |--+...++-...-++.|+.|.|+-|-+-
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 3468888888999999999999999988877766 56677888888888999999999987654
No 270
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.49 E-value=97 Score=35.64 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=36.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 004794 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL 55 (730)
Q Consensus 17 ~tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIP 55 (730)
..|.+.|..+||....+.|+...|+.+|-+.|+.+.|+.
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~ 300 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLK 300 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCc
Confidence 458999999999999999999999999999999999864
No 271
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.47 E-value=1.5e+02 Score=26.14 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004794 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GKv 67 (730)
...+.|.|++..+=.++|+.|+..+++.+..-+ |+..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 368999999999999999999999999998764 5677764
No 272
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.75 E-value=4.7 Score=36.03 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004794 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tGrtitl~V~pSdTIe~VK~~Iq-gEGIPpdqQRLIfAvl 144 (730)
.+++.+.+.|+++.++..|+.... +.|++++++||+|.--
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~ 72 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 72 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSS
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCE
Confidence 356677899999999999999887 8999999999998633
No 273
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.31 E-value=1.7e+02 Score=28.74 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=34.9
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 004794 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ 58 (730)
Q Consensus 18 tMqItVKtldGKt~tLeVdpsdTV~dLKekIaektGIPpeq 58 (730)
.+.|.|-..+|.+..+.|++.+|+.+|-+.+..+.++..+.
T Consensus 34 k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred ceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 45667777789999999999999999999999999986643
No 274
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=20.86 E-value=1.4e+02 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004794 277 LAEVMQSTRQMLIEQSAECLHQLARQLEN 305 (730)
Q Consensus 277 L~~v~~~t~qll~~~a~~~Ls~la~qL~~ 305 (730)
.+..+..-+..++.+ +.+|++|..||.|
T Consensus 11 v~~AL~KiQ~VVN~q-~~aL~~Lt~QL~n 38 (38)
T 2beq_A 11 TSTALGKLQDVVNQN-AQALNTLVKQLSX 38 (38)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhcC
Confidence 345566667777888 8999999999864
No 275
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=20.86 E-value=1.1e+02 Score=29.34 Aligned_cols=79 Identities=9% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCCCcEEEEEEec----------CCc----EEEEEecCCCCHHHHHHHHHHHhCC-CCCC----eEEEeCC---------
Q 004794 14 SSETTIEIKIKTL----------DSQ----TYTLRVDKQVPVPALKEQIASVTGV-LSEQ----QRLICRG--------- 65 (730)
Q Consensus 14 ~s~~tMqItVKtl----------dGK----t~tLeVdpsdTV~dLKekIaektGI-Ppeq----QRLIF~G--------- 65 (730)
.++-.++|++|.- .++ .+.|-...+.|+.+|-..|.+..-- +... .+++|-.
T Consensus 25 tcPfLLRvF~~~ng~hh~~~eF~~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~k 104 (143)
T 4a6q_A 25 TCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVK 104 (143)
T ss_dssp SCCEEEEEEEESSSSCCCGGGGCTTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEE
T ss_pred CCCeEEEEEecCCCCCCCHHHccCCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeec
Confidence 3444588888882 122 3566777999999999999886421 1111 2334322
Q ss_pred --------eec-CCchhhccccccCCCEEEEeeecC
Q 004794 66 --------KVL-KDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 66 --------KvL-kDdkTLsDYGIedGSTLhLVlRlp 92 (730)
+.- +|++||.+.+..-|+-|.+.+-.+
T Consensus 105 dlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP 140 (143)
T 4a6q_A 105 EIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPP 140 (143)
T ss_dssp EEEEEETTBCCTTTTCBTGGGTCCTTCEEEEEEECG
T ss_pred cCCEEecCCCCCcccccHHHCCCcCCCEEEEEEeCC
Confidence 222 467999999999999999887543
Done!