BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004796
         (730 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V4B|A Chain A, The Crystal Structure Of Azor (Azo Reductase) From
           Escherichia Coli: Oxidized Form
 pdb|2D5I|A Chain A, The Crystal Structure Of Azor (Azo Reductase) From
           Escherichia Coli
 pdb|2Z98|A Chain A, The Crystal Structure Of Azor (Azoreductase) From
           Escherichia Coli: Oxidized Azor In Tetragonal Crystals
           (The Resolution Has Improved From 1.8 (1v4b) To 1.4
           Angstrom)
 pdb|2Z9B|A Chain A, The Crystal Structure Of Azor (Azoreductase) From
           Escherichia Coli: Reduced Azor In Tetragonal Crystals
 pdb|2Z9C|A Chain A, The Crystal Structure Of Azor (azoreductase) From
           Escherichia Coli: Azor In Complex With Dicoumarol
 pdb|2Z9D|A Chain A, The Crystal Structure Of Azor (Azoreductase) From
           Escherichia Coli: Oxidized Azor In Orthorhombic Crystals
 pdb|2Z9D|B Chain B, The Crystal Structure Of Azor (Azoreductase) From
           Escherichia Coli: Oxidized Azor In Orthorhombic Crystals
          Length = 200

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 199 QMAVTSVTSFPVQILDGELKECVKKLDEHISLTIKQAQSCDSLTVPESNAEDIMKFLQTL 258
           ++ V  + + P+ +LDGEL   ++  D  ++   ++A +     + E  A D++     +
Sbjct: 36  EITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPM 95

Query: 259 QNIPTTTQELSSYFFLFCMKLLQWKSSPN 287
            N   +TQ L +YF L     + ++ + N
Sbjct: 96  YNFNISTQ-LKNYFDLVARAGVTFRYTEN 123


>pdb|1TIK|A Chain A, Crystal Structure Of Acyl Carrier Protein
           Phosphodiesterase
          Length = 213

 Score = 30.8 bits (68), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 199 QMAVTSVTSFPVQILDGELKECVKKLDEHISLTIKQAQSCDSLTVPESNAEDIMKFLQTL 258
           ++ V  + + P+ +LDGEL   ++  D  ++   ++A +     + E  A D++      
Sbjct: 39  EITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPX 98

Query: 259 QNIPTTTQELSSYFFLFCMKLLQWKSSPN 287
            N   +TQ L +YF L     + ++ + N
Sbjct: 99  YNFNISTQ-LKNYFDLVARAGVTFRYTEN 126


>pdb|4ESE|A Chain A, The Crystal Structure Of Azoreductase From Yersinia Pestis
           Co92 In Complex With Fmn
          Length = 204

 Score = 30.0 bits (66), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 197 GMQMAVTSVTSFPVQILDGELKECVKKLDEHISLTIKQAQSCDSLTVPESNAEDIMKFLQ 256
           G Q+ V  + + P+ +LDGEL   ++     ++   ++A +     + E  A D++    
Sbjct: 38  GDQITVRDLAAQPIPVLDGELVGALRPSGTALTPRQQEALALSDELIAELQANDVIVIAA 97

Query: 257 TLQNIPTTTQELSSYF 272
            + N    TQ L +YF
Sbjct: 98  PMYNFNIPTQ-LKNYF 112


>pdb|1T5B|A Chain A, Structural Genomics, A Protein From Salmonella Typhimurium
           Similar To E. Coli Acyl Carrier Protein
           Phosphodiesterase
 pdb|1T5B|B Chain B, Structural Genomics, A Protein From Salmonella Typhimurium
           Similar To E. Coli Acyl Carrier Protein
           Phosphodiesterase
          Length = 201

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 199 QMAVTSVTSFPVQILDGELKECVKKLDEHISLTIKQAQSCDSLTVPESNAEDIMKFLQTL 258
           ++ V  + + PV +LDGEL   ++  D  ++   + A +     + E  A D++     +
Sbjct: 37  EITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPM 96

Query: 259 QNIPTTTQELSSYFFL 274
            N    TQ L +YF L
Sbjct: 97  YNFNIPTQ-LKNYFDL 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,033,259
Number of Sequences: 62578
Number of extensions: 644930
Number of successful extensions: 1532
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 13
length of query: 730
length of database: 14,973,337
effective HSP length: 106
effective length of query: 624
effective length of database: 8,340,069
effective search space: 5204203056
effective search space used: 5204203056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)