Query 004796
Match_columns 730
No_of_seqs 242 out of 1126
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 13:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 7.3E-30 1.6E-34 280.9 31.2 344 317-706 1-405 (406)
2 TIGR01666 YCCS hypothetical me 100.0 2E-25 4.3E-30 261.6 47.4 235 318-560 373-613 (704)
3 TIGR01667 YCCS_YHJK integral m 100.0 9.7E-26 2.1E-30 264.9 43.6 234 319-560 376-616 (701)
4 PF04632 FUSC: Fusaric acid re 100.0 2.6E-26 5.6E-31 269.6 30.2 201 325-532 1-209 (650)
5 PRK10631 p-hydroxybenzoic acid 99.9 1.1E-25 2.3E-30 260.7 27.4 208 320-532 3-227 (652)
6 PRK11427 multidrug efflux syst 99.9 2.2E-19 4.8E-24 207.3 46.1 208 321-532 346-564 (683)
7 COG1289 Predicted membrane pro 99.8 2.3E-16 5E-21 186.7 39.3 206 320-532 349-557 (674)
8 PRK11427 multidrug efflux syst 99.7 2.7E-16 5.9E-21 181.9 26.3 223 324-557 28-255 (683)
9 COG4129 Predicted membrane pro 99.7 4.8E-15 1E-19 160.1 28.9 199 326-533 10-211 (332)
10 KOG4711 Predicted membrane pro 99.7 1.4E-16 3E-21 182.5 12.1 314 308-635 73-415 (625)
11 PF04632 FUSC: Fusaric acid re 99.6 1.5E-12 3.3E-17 153.5 41.7 450 3-495 53-514 (650)
12 COG1289 Predicted membrane pro 99.6 9.1E-13 2E-17 156.3 29.5 165 320-488 5-177 (674)
13 PF13515 FUSC_2: Fusaric acid 99.6 4.5E-14 9.8E-19 131.9 14.3 124 338-466 1-128 (128)
14 PF06081 DUF939: Bacterial pro 99.6 7.4E-14 1.6E-18 134.1 15.6 137 327-470 5-141 (141)
15 PF10337 DUF2422: Protein of u 99.0 1.1E-06 2.4E-11 100.3 36.4 246 315-564 4-316 (459)
16 PRK10631 p-hydroxybenzoic acid 98.8 6.7E-05 1.5E-09 88.5 42.1 428 3-488 69-519 (652)
17 PF12805 FUSC-like: FUSC-like 98.6 1.2E-05 2.6E-10 86.1 23.5 176 378-561 3-189 (284)
18 PF10334 DUF2421: Protein of u 98.4 3.1E-05 6.7E-10 80.5 19.4 96 471-567 2-110 (229)
19 TIGR01667 YCCS_YHJK integral m 98.3 0.00013 2.9E-09 87.2 26.6 170 322-497 4-177 (701)
20 TIGR01666 YCCS hypothetical me 98.2 0.00054 1.2E-08 82.0 28.6 172 322-497 4-177 (704)
21 PF11744 ALMT: Aluminium activ 98.2 2.3E-05 4.9E-10 87.7 14.4 189 4-204 68-274 (406)
22 PF11168 DUF2955: Protein of u 97.3 0.0038 8.3E-08 60.2 12.9 137 329-469 2-139 (140)
23 PF10337 DUF2422: Protein of u 95.3 0.061 1.3E-06 61.7 8.9 199 3-204 73-318 (459)
24 TIGR02865 spore_II_E stage II 92.8 20 0.00044 44.1 23.9 34 675-708 435-475 (764)
25 PF10334 DUF2421: Protein of u 85.8 2.9 6.4E-05 43.5 8.1 106 100-205 1-110 (229)
26 PF12805 FUSC-like: FUSC-like 80.7 9.7 0.00021 40.8 9.8 120 5-131 4-123 (284)
27 COG5336 Uncharacterized protei 75.6 9.5 0.0002 35.3 6.5 38 367-404 43-80 (116)
28 PF06081 DUF939: Bacterial pro 70.7 14 0.00031 35.5 7.0 60 332-392 79-139 (141)
29 COG4129 Predicted membrane pro 67.8 36 0.00078 37.7 10.2 116 3-130 61-178 (332)
30 PF05478 Prominin: Prominin; 64.2 3.6E+02 0.0079 33.5 22.5 15 455-469 152-166 (806)
31 PF12732 YtxH: YtxH-like prote 58.3 93 0.002 26.4 9.0 42 454-496 3-44 (74)
32 KOG4711 Predicted membrane pro 55.8 20 0.00043 42.8 5.9 110 444-557 378-493 (625)
33 PF12732 YtxH: YtxH-like prote 53.8 77 0.0017 26.9 7.7 46 84-130 3-48 (74)
34 PF13515 FUSC_2: Fusaric acid 53.0 63 0.0014 29.5 7.8 29 366-394 25-53 (128)
35 PF14362 DUF4407: Domain of un 52.6 3.3E+02 0.0071 29.3 23.6 36 447-482 81-117 (301)
36 PRK11677 hypothetical protein; 48.5 74 0.0016 30.7 7.4 40 454-493 8-48 (134)
37 PF01277 Oleosin: Oleosin; In 36.4 3.7E+02 0.0081 25.4 9.8 41 373-415 22-62 (118)
38 COG3851 UhpB Signal transducti 32.4 8E+02 0.017 27.9 19.1 73 419-498 220-296 (497)
39 COG4980 GvpP Gas vesicle prote 31.0 3E+02 0.0065 25.9 8.3 42 453-495 8-49 (115)
40 PF06295 DUF1043: Protein of u 29.8 3.6E+02 0.0078 25.6 8.9 20 454-473 4-23 (128)
41 PF04982 HPP: HPP family; Int 29.7 4.7E+02 0.01 24.5 12.1 61 354-416 7-67 (120)
42 COG3448 CBS-domain-containing 29.6 2.8E+02 0.0061 30.5 8.8 46 371-416 79-124 (382)
43 PF13047 DUF3907: Protein of u 29.3 2.7E+02 0.0058 27.3 7.8 56 539-601 35-91 (148)
44 PF10031 DUF2273: Small integr 28.5 1.4E+02 0.003 24.0 4.9 19 374-392 8-26 (51)
45 PF06123 CreD: Inner membrane 27.5 2E+02 0.0043 33.2 7.8 43 351-393 354-398 (430)
46 PF04286 DUF445: Protein of un 25.9 48 0.0011 36.1 2.6 21 373-393 343-363 (367)
47 PF10779 XhlA: Haemolysin XhlA 25.8 67 0.0015 27.2 2.9 22 373-394 49-70 (71)
48 KOG4331 Polytopic membrane pro 23.3 1.5E+03 0.033 28.3 16.3 36 453-497 163-198 (865)
49 PF07139 DUF1387: Protein of u 22.9 7.4E+02 0.016 27.2 10.6 26 625-654 260-285 (302)
50 PRK14414 membrane protein; Pro 22.7 6.2E+02 0.013 26.4 9.6 15 327-341 63-77 (210)
51 TIGR00844 c_cpa1 na(+)/h(+) an 22.3 4.9E+02 0.011 32.5 10.2 22 374-395 210-231 (810)
52 PHA00094 VI minor coat protein 22.2 3.9E+02 0.0084 25.0 7.1 24 373-396 9-32 (112)
53 PRK10490 sensor protein KdpD; 21.4 7E+02 0.015 31.4 11.8 9 458-466 487-495 (895)
54 PF10011 DUF2254: Predicted me 21.4 5.6E+02 0.012 28.7 9.9 21 373-393 46-66 (371)
55 KOG1467 Translation initiation 21.4 1.6E+02 0.0036 34.1 5.5 145 548-712 251-395 (556)
56 PRK09776 putative diguanylate 21.1 9E+02 0.019 30.6 12.8 9 379-387 48-56 (1092)
57 PRK11715 inner membrane protei 20.6 3E+02 0.0065 31.8 7.6 43 351-393 360-404 (436)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=99.97 E-value=7.3e-30 Score=280.89 Aligned_cols=344 Identities=17% Similarity=0.193 Sum_probs=244.3
Q ss_pred cccc-ccchhHHHHHHHHHHHHHHHHHHHhcC-----CCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004796 317 WSMK-VKSKRLVPAFKCSLSLGLAVLFGLLYS-----KPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLG 390 (730)
Q Consensus 317 w~~~-~~~~~l~~AlK~alA~~La~~la~~~~-----l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~ 390 (730)
|+.. -|++++.|++|+++|+++..++.+.-. ..++.||++||++|+.|++|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 688999999999999999987754321 2589999999999999999999999999999999999999999
Q ss_pred HHHhcc-----hhHHHHHHHHHHHHHHHHHhhhh----hhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHH
Q 004796 391 CFLFER-----FLPIRFLSLIPWFIFTAFLRRSR----MYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLS 461 (730)
Q Consensus 391 ~~l~~~-----~~~l~~l~L~~wi~~~~fl~~~~----~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiv 461 (730)
..+... .+..+.+.++++.++.+|++... .|.|++.+..+|..+|.++....++....|..|+..|.+|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 877653 24455666777777788888432 388888888888888888854455556999999999999999
Q ss_pred HHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhhhc----cCCc----------hhHHHHHHHHHHHHHHHHHHHHHh
Q 004796 462 CSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSMSL----QSSQ----------ASWLENQKRLKMQVTELAKFIGEA 527 (730)
Q Consensus 462 iallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l~~----~~~~----------~~l~e~~~~l~~~L~~L~~ll~eA 527 (730)
++++|+.++||.|++..+++.+.+.++.+++.++.... ...+ +..-+..+.+...-++-+.++..|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999988877765421 0000 011111222222223345555555
Q ss_pred hcCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhHHHHHHHHHhhhhhccchhh
Q 004796 528 EVEPNFW--FFPFHIACYSKLLGTLTKMVDLLLFAAHSVGFLEQDSQRIATSWKNEVHELDSDLELLKEKVGSSIKCFED 605 (730)
Q Consensus 528 ~~Ep~~~--~~pf~~~~y~~ll~sl~Rl~dlL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 605 (730)
++||... ..+||++.|.++-..+++..-. +..+|+|+.+.++++++
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~--------------------------------v~AL~gcl~seiq~p~~ 288 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYC--------------------------------VEALHGCLNSEIQAPPE 288 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHH--------------------------------HHHHHhcccccccccHH
Confidence 5555431 1234555555544433332211 12368899999999999
Q ss_pred Hhhhh--hHHHHHHHHhh--cccccchhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhchhh-----------
Q 004796 606 VTTIK--SLATIEKELEK--NNISYDLELGKSKNPNGISDLDEAAMGKLICSYLQHAKELVDKIKATEG----------- 670 (730)
Q Consensus 606 ~~~~~--~l~~l~~~~~~--~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~~----------- 670 (730)
++++. ...++..|..+ |.++..+.+|+++++- ++ -+.+.++++++|+..-+
T Consensus 289 ~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~~~~~------~~--------~~~~~~~A~~~Lq~~l~~~~~ll~~s~~ 354 (406)
T PF11744_consen 289 LRQKFQEECTRVSSESAKVLRELSNSIKTMTKSSSI------DD--------HVANLKEAAEDLQSKLDSQSYLLLNSES 354 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc------hh--------HHHHHHHHHHHHHHHHHhCCccccCCch
Confidence 98866 88888888888 8889999999998531 11 12344444444443110
Q ss_pred ---------------hhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004796 671 ---------------EKELRSQVVLSLSALGYCMQGLIRETKLIEEGIKEL 706 (730)
Q Consensus 671 ---------------~~~~~~~~~~~~~~~~fc~~~~~~e~~~~~~~~~~l 706 (730)
.+....-.++.+..+..-+-|+.-=+..|.+.+.||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~~v~eL 405 (406)
T PF11744_consen 355 PERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVEAVEEL 405 (406)
T ss_pred hhhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122345567788888887888888888888888887
No 2
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.96 E-value=2e-25 Score=261.59 Aligned_cols=235 Identities=16% Similarity=0.099 Sum_probs=177.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 004796 318 SMKVKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERF 397 (730)
Q Consensus 318 ~~~~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~ 397 (730)
++++++..+|||+|++++++++++++.+++.++|||+++|+++|+||++|+|+.|+++|++||++|+++|+++.++++..
T Consensus 373 ~l~~~S~~fRhAlRlalal~~a~~i~~~l~l~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll~l~p~~ 452 (704)
T TIGR01666 373 HFTFESPLFRHAVRLSIVLFLGYAIIQFFGFNLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLLYFNPSL 452 (704)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999887774
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccCCcch
Q 004796 398 LPIRFLSLIPWFIFTAFLRRSRMYGQA-GGISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLLFQPTRAS 476 (730)
Q Consensus 398 ~~l~~l~L~~wi~~~~fl~~~~~Yg~a-g~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~ 476 (730)
.....+.++ .+...+....+.|+++ ..+|.+ ++++. ...|++.++++.|++||+||+++|+++.+++||.|..
T Consensus 453 ~~~l~liv~--~~~l~~~~~~~~Y~~a~~fiT~~---vll~~-~l~g~~~~~~~~Rl~dTlIG~~iAl~a~~li~P~w~~ 526 (704)
T TIGR01666 453 ELQLVLVVL--TGVLFFAFRSNNYSFATFFITLL---VLLCF-NVLGEGAAVLLPRLLDTLIGCAIAWAAVSYIWPDWQY 526 (704)
T ss_pred HHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHH---HHHHH-HcccchHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 332222211 1112222233567764 334443 22222 2345566889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CC---chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHH
Q 004796 477 TLAKVQLSKSLATLHDCIGSMSLQ--SS---QASWLENQKRLKMQVTELAKFIGEAEVEPNFWFFPFHIACYSKLLGTLT 551 (730)
Q Consensus 477 ~~lr~~L~~~l~~l~~~~~~l~~~--~~---~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~~~~~pf~~~~y~~ll~sl~ 551 (730)
+.+++.+.+.+++..++++.+... .+ +...+..||++....++++..+..+..||. +..+ ..+.--+++....
T Consensus 527 ~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~~~yr~aRR~a~~~~a~l~~~~~~m~~EP~-~~~~-~~~~~~~ll~~~~ 604 (704)
T TIGR01666 527 LQLDKVSHQALRANAVYLLHIISQYQFGKSDDLKYRIARRNAHNYDAALSTTVSNMNNEPV-KYKA-YLQKGFRLLKLNH 604 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchh-hHHHHHHHHHHHH
Confidence 999999999999999998776321 11 223467789999999999999999999998 2322 2222223334445
Q ss_pred HHHHHHHHH
Q 004796 552 KMVDLLLFA 560 (730)
Q Consensus 552 Rl~dlL~~~ 560 (730)
++++-+..+
T Consensus 605 ~llsyisaL 613 (704)
T TIGR01666 605 SLLSYISAL 613 (704)
T ss_pred HHHHHHHHH
Confidence 555555443
No 3
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.96 E-value=9.7e-26 Score=264.89 Aligned_cols=234 Identities=20% Similarity=0.176 Sum_probs=179.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 004796 319 MKVKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFL 398 (730)
Q Consensus 319 ~~~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~ 398 (730)
+++++..+|||+|++++++++++++.+++.++|||+++|+++|+||+.|+|++|+++|++||++|+++|+++.++++...
T Consensus 376 l~~~S~~fRhAlR~ala~~~a~~i~~~l~l~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~~l~p~~~ 455 (701)
T TIGR01667 376 LTPESPLFRHAVRLSLVVMLGYAILMGTALHLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLVIGVALHFLIPSLE 455 (701)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999888877633
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhhhhheecccCCC-CcHHHHHHHHHHHHHHHHHHHHHhhcccCCcch
Q 004796 399 PIRFLSLIPWFIFTAFLRRSRMYGQA-GGISAVIGAVLILGRKNFG-PPSEFAIARIVETFIGLSCSIMIDLLFQPTRAS 476 (730)
Q Consensus 399 ~l~~l~L~~wi~~~~fl~~~~~Yg~a-g~ita~~~~iiil~~~~~~-~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~ 476 (730)
. .+.++++.+++.|....+.|+++ .++|.. +++.. ...+ ++.++++.|++||+||+++|+++++++||.|..
T Consensus 456 ~--~l~l~v~~~~~~~~~~~~~Y~~a~~fiT~~---vll~~-~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~llwP~w~~ 529 (701)
T TIGR01667 456 G--QLTLMVITGVAFFAFRSKNYGWATVFITLL---VLLCF-NLLGLDGEQYILPRLIDTLIGCLIAWGAVSYLWPDWQS 529 (701)
T ss_pred H--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 3 22333344444443334568764 445443 22221 2334 445889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--C---CchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHH
Q 004796 477 TLAKVQLSKSLATLHDCIGSMSLQ--S---SQASWLENQKRLKMQVTELAKFIGEAEVEPNFWFFPFHIACYSKLLGTLT 551 (730)
Q Consensus 477 ~~lr~~L~~~l~~l~~~~~~l~~~--~---~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~~~~~pf~~~~y~~ll~sl~ 551 (730)
+.+++++++.+++..++++.+... . ++.+.+..||++....++++..+..+..||. +.+...+....++....
T Consensus 530 ~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~~~yr~aRr~a~~a~a~l~~~~~~m~~EP~--~~~~~~~~~~~ll~~~~ 607 (701)
T TIGR01667 530 RLLRKMLHDALEANQRYLRLILSQYPQGKPDDLAYRIARRNAHNTDAALSTTLSNMMQEPA--FNSHYLEDGFRLLTLSH 607 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhhHHHHHHHHHHHH
Confidence 999999999999999988876321 1 1223466788899999999999999999998 23333334444445455
Q ss_pred HHHHHHHHH
Q 004796 552 KMVDLLLFA 560 (730)
Q Consensus 552 Rl~dlL~~~ 560 (730)
+++..+..+
T Consensus 608 ~ll~~isal 616 (701)
T TIGR01667 608 TLLSYISAL 616 (701)
T ss_pred HHHHHHHHH
Confidence 555555443
No 4
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.95 E-value=2.6e-26 Score=269.62 Aligned_cols=201 Identities=24% Similarity=0.430 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 004796 325 RLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLS 404 (730)
Q Consensus 325 ~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~ 404 (730)
+++|++|+++|+++++++++++++|+||||++|+++|+||+.|.++.||++|++||++|+++|+++..++++.|.+.+++
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~ 80 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQLPHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLA 80 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----hhhhhhh-hhHHHHHhhhhheecccCCCCc---HHHHHHHHHHHHHHHHHHHHHhhcccCCcch
Q 004796 405 LIPWFIFTAFLR----RSRMYGQ-AGGISAVIGAVLILGRKNFGPP---SEFAIARIVETFIGLSCSIMIDLLFQPTRAS 476 (730)
Q Consensus 405 L~~wi~~~~fl~----~~~~Yg~-ag~ita~~~~iiil~~~~~~~p---~~~A~~Ri~ei~IGiviallV~~ll~P~ra~ 476 (730)
+.+|+++|.|+. +.+.|+. .+|||+. +|.+. ..++| .+++++|+.+|+||++|+++|+.++||.+++
T Consensus 81 lal~i~~c~~~~~~~~~~~~y~~~lag~T~~---iv~~~--~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~~ 155 (650)
T PF04632_consen 81 LALWIGLCLYLSLLDRNFRSYAFMLAGYTAA---IVALP--AVGNPEQVFDLALWRVLEILIGILCATLVSMLFFPQRAR 155 (650)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH---HHHhh--cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHH
Confidence 999999998876 4566765 4677766 55444 33445 3889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004796 477 TLAKVQLSKSLATLHDCIGSMSLQSSQASWLENQKRLKMQVTELAKFIGEAEVEPN 532 (730)
Q Consensus 477 ~~lr~~L~~~l~~l~~~~~~l~~~~~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~ 532 (730)
..+++++.+.++...+++........++ ...++++...+.+++.+...+..|..
T Consensus 156 ~~l~~~l~~~l~~~~~~~~~~l~~~~~~--~~~~~~l~~~~~~l~~~~~~~~~e~~ 209 (650)
T PF04632_consen 156 RQLRRRLAQRLADLARWLAALLDGDPDP--AAERRRLARDIAALESLLSHARYESP 209 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc--chHHHHHHHHHHHHHHHHhhccccCc
Confidence 9999999999998888777653322111 11567788888999999999988875
No 5
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.94 E-value=1.1e-25 Score=260.71 Aligned_cols=208 Identities=20% Similarity=0.279 Sum_probs=177.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhh---------cCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004796 320 KVKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISF---------AAAREATFKVANIKAQGTVLGTVYGVLG 390 (730)
Q Consensus 320 ~~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~---------qp~~G~T~~~~~~RilGTvlGav~g~l~ 390 (730)
.|+.++++|++|+++|+++++++++++++++||||++|++||+ ||..|.++.|+++|++||++|+++|+++
T Consensus 3 ~p~~~~~~falk~~lA~~LAL~ia~~l~L~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~l 82 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALVI 82 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHh----hhhhhhh-hhHHHHHhhhhheecccCCCCcH---HHHHHHHHHHHHHHHH
Q 004796 391 CFLFERFLPIRFLSLIPWFIFTAFLR----RSRMYGQ-AGGISAVIGAVLILGRKNFGPPS---EFAIARIVETFIGLSC 462 (730)
Q Consensus 391 ~~l~~~~~~l~~l~L~~wi~~~~fl~----~~~~Yg~-ag~ita~~~~iiil~~~~~~~p~---~~A~~Ri~ei~IGivi 462 (730)
...|.+.|.+..+++.+|+++|.|.. +.+.|++ .+|||+. +|++. ..++|. ++++.|+.||+|||+|
T Consensus 83 ~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyTa~---iI~~~--~~~~p~~~f~~A~~R~~Ei~iGi~c 157 (652)
T PRK10631 83 IIATIRAPLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYTAL---IIVIT--IQPEPLLTPQFAVERCSEIVIGIVC 157 (652)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH---HHHHh--ccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999998754 5567876 5778776 55444 455553 8999999999999999
Q ss_pred HHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004796 463 SIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSMSLQSSQASWLENQKRLKMQVTELAKFIGEAEVEPN 532 (730)
Q Consensus 463 allV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l~~~~~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~ 532 (730)
+.+|+.+++|.+....++..+.+.+....++.+........++.+..+.++-.++.+++.+...+..|..
T Consensus 158 a~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~di~~le~lr~~~~~e~~ 227 (652)
T PRK10631 158 AILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKHGDKEEVDKAWGDLVRRTTALNGMRSNLMMESS 227 (652)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999998876666665532222344566678888899999999987766643
No 6
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.89 E-value=2.2e-19 Score=207.32 Aligned_cols=208 Identities=15% Similarity=0.145 Sum_probs=151.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--h
Q 004796 321 VKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLF-ER--F 397 (730)
Q Consensus 321 ~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~-~~--~ 397 (730)
-+...++||+|+++|+++++++...+++++|||+.+|+++|++|+.|.|.+|+++|++||++|+++|+++..+. ++ +
T Consensus 346 tNp~~~R~ALRt~lAa~La~~i~~~l~w~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~~ 425 (683)
T PRK11427 346 TNPDYMRYALKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDN 425 (683)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34457999999999999999999999999999999999999999999999999999999999999999988544 32 1
Q ss_pred hHHHHHHHHHHHHHHHHH--hh-hhhhhh-hhHHHHHhhhhheecccCCCCc--HHHHHHHHHHHHHHHHHHHHHhhccc
Q 004796 398 LPIRFLSLIPWFIFTAFL--RR-SRMYGQ-AGGISAVIGAVLILGRKNFGPP--SEFAIARIVETFIGLSCSIMIDLLFQ 471 (730)
Q Consensus 398 ~~l~~l~L~~wi~~~~fl--~~-~~~Yg~-ag~ita~~~~iiil~~~~~~~p--~~~A~~Ri~ei~IGiviallV~~ll~ 471 (730)
.+...+++++.+.+..++ .. ...|+. ..++|++ ++.+. ...++. ...+..|+.+|++|++|+.++..++|
T Consensus 426 ~~~Llllllp~~llg~wv~~~~~R~sYa~~~ag~T~~---li~L~-~l~~p~~d~~~i~dRvl~tLLGi~iA~la~~lVw 501 (683)
T PRK11427 426 IVELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFA---LATLE-NVFGPVYDLVEIRDRALGILIGTVVSAVIYTFVW 501 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HHHhh-cccCcccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222233322222222 21 124543 3445444 33322 112222 24567899999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhccC--CchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004796 472 PTRASTLAKVQLSKSLATLHDCIGSMSLQS--SQASWLENQKRLKMQVTELAKFIGEAEVEPN 532 (730)
Q Consensus 472 P~ra~~~lr~~L~~~l~~l~~~~~~l~~~~--~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~ 532 (730)
|.+.+..+++.+.+.++.+.+.++...... +....+..|+++...+++++.+......||+
T Consensus 502 P~~~~~~L~~~l~~aLr~la~~l~~~~~~~~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Epq 564 (683)
T PRK11427 502 PESEARTLPQKLAGALGMLSKVLRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQ 564 (683)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999998877766421100 0111234567788889999999999999995
No 7
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.80 E-value=2.3e-16 Score=186.74 Aligned_cols=206 Identities=23% Similarity=0.324 Sum_probs=152.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 004796 320 KVKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAA-REATFKVANIKAQGTVLGTVYGVLGCFLFERFL 398 (730)
Q Consensus 320 ~~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~-~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~ 398 (730)
.++++.++||+|+++++.+++.+..+++.++|||+++|+++|++|+ +|++.+++.+|+.||++|.++|+++.++.....
T Consensus 349 ~~~~~alr~a~R~ala~~~~~~~~~~~~w~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~ 428 (674)
T COG1289 349 RLNSPALRHALRTALALLLGYAFWLALGWPHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLI 428 (674)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4788999999999999999999999999999999999999999999 999999999999999999999999988776644
Q ss_pred HH-HHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccCCcch
Q 004796 399 PI-RFLSLIPWFIFTAFLRRSRMYGQAG-GISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLLFQPTRAS 476 (730)
Q Consensus 399 ~l-~~l~L~~wi~~~~fl~~~~~Yg~ag-~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~ 476 (730)
.. ..+.+++.++++.+++. .+|++++ +++..+... ++ ....++..+...|+.|+.+|+++++++.+++||.+..
T Consensus 429 ~~~l~~l~~~~~l~~~~~~~-~~~~~a~~~i~l~v~~~--~~-l~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~ 504 (674)
T COG1289 429 PGLLLLLLLAALLFAAGIRL-AKYRLATLGITLLVLFL--VG-LLGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLWRP 504 (674)
T ss_pred hhHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHH--HH-HcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 22233333333333432 3355533 223221111 11 0123556899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004796 477 TLAKVQLSKSLATLHDCIGSMSLQSSQASWLENQKRLKMQVTELAKFIGEAEVEPN 532 (730)
Q Consensus 477 ~~lr~~L~~~l~~l~~~~~~l~~~~~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~ 532 (730)
..+++..++.++..++.+..+.+...... + ++...+....+......+..||.
T Consensus 505 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~p~ 557 (674)
T COG1289 505 RRLRRALRRALRALRRDLASALSREPTGR--E-RRFEHNADDALSQLLNLMASEPA 557 (674)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCccc--h-hhhhhccHHHHHHHHHHHhcCCc
Confidence 99999999999988888887743221111 2 33334444556666666666886
No 8
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.74 E-value=2.7e-16 Score=181.87 Aligned_cols=223 Identities=17% Similarity=0.067 Sum_probs=163.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 004796 324 KRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFL 403 (730)
Q Consensus 324 ~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l 403 (730)
.+.-.++|+.++++++++++..++.|+++|+..++++|+||+.|.|..|++.|++||++|+.+++++...+-++|.+..+
T Consensus 28 ~r~~~~~r~~~a~~L~l~i~~~l~~P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v~~P~l~~l 107 (683)
T PRK11427 28 GRVPQTLQLWVGCLLVILISMTFEIPFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGYPLIRLI 107 (683)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 34445599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHH-----HHHHHHHHHHHhhcccCCcchHH
Q 004796 404 SLIPWFIFTAFLRRSRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVE-----TFIGLSCSIMIDLLFQPTRASTL 478 (730)
Q Consensus 404 ~L~~wi~~~~fl~~~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~e-----i~IGiviallV~~ll~P~ra~~~ 478 (730)
++.+|++.|.|+.+....||++.+.+.+ +++.++..... +..-++.|..+ +.+|++|+++|+.++||.+.+..
T Consensus 108 ~ialw~~~~lyl~r~~rl~yvf~lag~t-aii~~~f~~v~-~~~E~~~R~~e~~w~~i~~gi~ca~lV~~l~~P~~~~~~ 185 (683)
T PRK11427 108 IAGPILMGCMFLMRTHRLGLVFFAVAIV-AIYGQTFPAML-DYPEVVVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAINQ 185 (683)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHH-HHHHhhccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcCChHHH
Confidence 9999999999987433334433333332 13312211222 22333899999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004796 479 AKVQLSKSLATLHDCIGSMSLQSSQASWLENQKRLKMQVTELAKFIGEAEVEPNFWFFPFHIACYSKLLGTLTKMVDLL 557 (730)
Q Consensus 479 lr~~L~~~l~~l~~~~~~l~~~~~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~~~~~pf~~~~y~~ll~sl~Rl~dlL 557 (730)
++.++.+.++...+++.. . +++.++...+ +...++.+.+..++.|-. ..+-+..++++.+.+..|+..+.
T Consensus 186 l~~~l~~~l~~a~~~l~~---~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 255 (683)
T PRK11427 186 MHQALNDRLDDAISHLTD---S--LAPLPETRIE--REALALQKLNVFCLADDA--NWRTQSAWWQSCVATVTYIYSTL 255 (683)
T ss_pred HHHHHHHHHHHHHHHhcC---C--Ccchhhhhhh--hhHHHHHHHHHHHhhccC--CcHhhHHHHHHHHHHHHHHHHHh
Confidence 999999999844333332 1 2222222111 334456666667777754 22334455666666666666444
No 9
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.71 E-value=4.8e-15 Score=160.06 Aligned_cols=199 Identities=20% Similarity=0.278 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 004796 326 LVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSL 405 (730)
Q Consensus 326 l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L 405 (730)
....+|+++|+++|++++.+++.|.|..|++++++.++|+...+++++++|+.|+++|+++|+++..+++.+|....+.+
T Consensus 10 g~RtlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~~ 89 (332)
T COG4129 10 GARTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVL 89 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHH
Q 004796 406 IPWFIFTAFLRRSRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLLFQPTRASTLAKVQLSK 485 (730)
Q Consensus 406 ~~wi~~~~fl~~~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~~~lr~~L~~ 485 (730)
++.+.+|..++... |. ...++.+..+ ++. ..+++ .+...|+.++++|+++|++|+.++.|.. ..++..-.+
T Consensus 90 ~i~i~~~~~~~~~~--g~-~~~~~~~~~i-i~~--~~~~~-~~~~~r~l~~~vG~~~a~lvn~~~~~~~--~~~~~~~~k 160 (332)
T COG4129 90 LIIIPLLVLLKLEN--GV-VPITVGVLHI-LVA--AMIPL-FLIFNRFLLVFVGVGVAFLVNLVMPPPD--YELKLYRAK 160 (332)
T ss_pred HHHHHHHHHHhccc--ch-hHHHHHHHHH-HHH--cccch-hHHHHHHHHHHHHHHHHHHHhhhcCCch--HHHHHHHHH
Confidence 66666666664221 11 1112221111 122 22322 3344499999999999999999999987 333333333
Q ss_pred HHHHHHHHHHhhh---ccCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004796 486 SLATLHDCIGSMS---LQSSQASWLENQKRLKMQVTELAKFIGEAEVEPNF 533 (730)
Q Consensus 486 ~l~~l~~~~~~l~---~~~~~~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~~ 533 (730)
....+++.+.... ...+.+..+.....+.+.+.++.++..-.+.|.++
T Consensus 161 v~~~~~~il~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~e~~~ 211 (332)
T COG4129 161 VEAILASILWEVASYLRDTESAELDKDLEALLRLLIKLAKLIAYRREENHF 211 (332)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333334333321 11222333444555666677777777777777664
No 10
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=99.68 E-value=1.4e-16 Score=182.45 Aligned_cols=314 Identities=18% Similarity=0.158 Sum_probs=215.4
Q ss_pred cchhhh-hhhcccc-ccchhHHHHHHHHHHHHHHHHHHHhcCC-----CCcchhHHHHHHhhcCChhHHHHHHHHHHHHH
Q 004796 308 FSFKEV-WSNWSMK-VKSKRLVPAFKCSLSLGLAVLFGLLYSK-----PNGIWSGLPVAISFAAAREATFKVANIKAQGT 380 (730)
Q Consensus 308 ~~~k~~-~~~w~~~-~~~~~l~~AlK~alA~~La~~la~~~~l-----~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGT 380 (730)
.++++. +..|... -++++..|++|+++|..|...+-+.-.. .++.|+.+|+++|+..+.|+|+.++++|.+||
T Consensus 73 ~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~t 152 (625)
T KOG4711|consen 73 AKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGT 152 (625)
T ss_pred HHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHH
Confidence 334433 5678877 7888999999999999998877543221 35789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh---c-chhH-HHHHHHHHHHHHHHHHh---hhhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHH
Q 004796 381 VLGTVYGVLGCFLF---E-RFLP-IRFLSLIPWFIFTAFLR---RSRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIAR 452 (730)
Q Consensus 381 vlGav~g~l~~~l~---~-~~~~-l~~l~L~~wi~~~~fl~---~~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~R 452 (730)
+.++.+|+.+-.+. + .++. .+...++.-.....|++ ..+.|-|...|...+.+++.+.+...+.+.+.|..|
T Consensus 153 L~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~~R 232 (625)
T KOG4711|consen 153 LSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEYGFLIFILTFCLVEVSGYRSDYFLELALQR 232 (625)
T ss_pred hhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccchhhhHHHHHhhhheecccchhHHHHHHHHH
Confidence 99999999665433 3 2222 23333444334445555 223344434455555556666643445556999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhhh---ccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 004796 453 IVETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSMS---LQSSQASWLENQKRLKMQVTELAKFIGEAEV 529 (730)
Q Consensus 453 i~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l~---~~~~~~~l~e~~~~l~~~L~~L~~ll~eA~~ 529 (730)
+..+.+|..++++++.++||.||+..+++..++.+..++..++... .+.+ ++.....+. .+.........++.
T Consensus 233 l~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~-~~y~~~~~i---~~~s~~~~~~s~~~ 308 (625)
T KOG4711|consen 233 LLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFN-GEYFCVEKI---EILSIPTFYKSAAW 308 (625)
T ss_pred HHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhc-chheeehhh---hhcchhhhhhhcch
Confidence 9999999999999999999999999999999888887777666310 0111 111111100 00001111111122
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhHHHHHH-------HHHhhhhhccc
Q 004796 530 EPNFWFFPFHIACYSKLLGTLTKMVDLLLFAAHSVGFLEQDSQRIATSWKNEVHELDSDLEL-------LKEKVGSSIKC 602 (730)
Q Consensus 530 Ep~~~~~pf~~~~y~~ll~sl~Rl~dlL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~l~~ 602 (730)
+|. + .+|+.++.+......+..++.|.. -++...++.+||+.|++ ++..+++ .|+|+-++++.
T Consensus 309 ~~~-----~--~Gy~svl~s~s~ee~l~~~A~Wep--~hG~~~~f~~Pw~~Yvk-~~~~~r~ca~~i~alh~~l~s~~qa 378 (625)
T KOG4711|consen 309 YPL-----Y--NGYWSVLQSKSQEERLANFAIWEP--PHGPYFTFRHPWKNYVK-LGGALRQCAFIIMALHGCLLSEIQA 378 (625)
T ss_pred hhh-----h--cchhHHhhhhhHHHHHHHHheecC--CCCCceeeecchhHeee-hhhHHHHHHHHHHHhcccccccccC
Confidence 332 1 467777777766666666655554 44546678888888887 7777776 78999999999
Q ss_pred hhhHhhhh--hHHHHHHHHhh--cccccchhcCCCCC
Q 004796 603 FEDVTTIK--SLATIEKELEK--NNISYDLELGKSKN 635 (730)
Q Consensus 603 ~~~~~~~~--~l~~l~~~~~~--~~~~~d~e~~~~~~ 635 (730)
+.++.+++ .+.++..|+.+ +.....+|.+++.+
T Consensus 379 p~~~~~~~~~~l~rva~e~~kvl~~~~~~~~~~~~~s 415 (625)
T KOG4711|consen 379 PRDLRNKFRLTLRRVAIEISKVLRPFRAKVELMYKLS 415 (625)
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Confidence 99998877 88899988888 66677788888874
No 11
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.65 E-value=1.5e-12 Score=153.47 Aligned_cols=450 Identities=16% Similarity=0.142 Sum_probs=241.8
Q ss_pred hhhHHHhhhhhHHHHHHhCCCccchhh-HHHHHHHHHHHhhccCCCchhHHHHHhhchheeeEE--EEecCCccccceec
Q 004796 3 LYATVQTVGPAILSLKLIGPARFTSTT-TALAVALAAYVVALPEGTHMKAKRIALGQIVITYVI--GFVNGERTEAVMHP 79 (730)
Q Consensus 3 l~~t~~~~~~~~~~l~~~~~~~~~~~~-~~~~va~~~f~v~~p~~t~~v~krial~~i~i~~v~--~~~~~~~t~~i~~p 79 (730)
+.||+.|++-+++...+.+++.+.... .++|+++.+|+..+-. ++-.--+-|+.++.+.|+ .+.+|++ ....-
T Consensus 53 ~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~~~~--~~~~y~~~lag~T~~iv~~~~~~~p~~--~f~~a 128 (650)
T PF04632_consen 53 LIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSLLDR--NFRSYAFMLAGYTAAIVALPAVGNPEQ--VFDLA 128 (650)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhcccCccH--HHHHH
Confidence 468999999999988887666655443 4467777776665443 233333445555544442 3334443 22222
Q ss_pred hhHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHhhhhhhhHHHHHHH
Q 004796 80 LHVAASTAVGVFACVLALSLPYPRLACCQVKKNCKLLSENSSERLKLYVKAFCAEDNTSALASISQAKLLTIGGTKFIQN 159 (730)
Q Consensus 80 ~~v~~~~~lG~~~~vla~llP~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~~~~~~s~~k~l~~a~~~~l~~ 159 (730)
+.=...+++|++++.++-.+-+|+-+.+++++..++..+++.+.+.-..+.--.++. ..+.+.... ..
T Consensus 129 ~~R~~ei~iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~--------~~~~l~~~~----~~ 196 (650)
T PF04632_consen 129 LWRVLEILIGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAA--------ERRRLARDI----AA 196 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch--------HHHHHHHHH----HH
Confidence 234478999999999998888899999999999999999888888766665544332 222222222 23
Q ss_pred HHhhccccccccccccccccccCChhhhhhhccccchhHHHHHHhcccCCcccccchHHHHHHHhhHHHHHHHHhhhhcC
Q 004796 160 IKRYQESMKWERLPLKFLRSYYMNPGEKLQDLEIPLKGMQMAVTSVTSFPVQILDGELKECVKKLDEHISLTIKQAQSCD 239 (730)
Q Consensus 160 i~~~~~~~~wE~~~~~~f~~~~~~~~~~~~~L~~~Lr~m~~al~~~~~~p~~i~d~e~~~~L~~~~~~i~~~l~~~~~~~ 239 (730)
++.......+|......-+.........+.++..-+++++..+.....-+. ....|+.+.+ +++...
T Consensus 197 l~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~l~~~l----~~la~~-------- 263 (650)
T PF04632_consen 197 LESLLSHARYESPRLRRRRRRLRALQARLLRLLALLRSLARRLAALPDAPD-AARLELAALL----EELAAA-------- 263 (650)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHH----HHHhhc--------
Confidence 444444455553222200000000111111122222222222221111000 0000122222 222220
Q ss_pred CCCCcCcchHHHHHHHHhccCCCccc--cccchHHHHHHHHHhhhhhCCCCCCCcccccccccccCCCCCcchhhhhhhc
Q 004796 240 SLTVPESNAEDIMKFLQTLQNIPTTT--QELSSYFFLFCMKLLQWKSSPNQSTNCLKDDTVKEYEGSSNGFSFKEVWSNW 317 (730)
Q Consensus 240 ~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~fFlf~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~w 317 (730)
...+........+.+.+....... ....--.++..+....+++..... +.......+..+... ..
T Consensus 264 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~l~~~~~----~~~~l~~~~~~~~~~-------~~ 330 (650)
T PF04632_consen 264 --AQRADLDQAAAALRQRIAALRPAASDDSDWQRALLARLADLLRDLIQALR----SLRALRRPIPARRPF-------RF 330 (650)
T ss_pred --ccccccHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHhHHHHHH----HHHhhhccccccccc-------cc
Confidence 000111111111111111111111 111111333333333332221000 000000000000000 00
Q ss_pred ccccc-chhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 004796 318 SMKVK-SKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISF--AAAREATFKVANIKAQGTVLGTVYGVLGCF-L 393 (730)
Q Consensus 318 ~~~~~-~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~--qp~~G~T~~~~~~RilGTvlGav~g~l~~~-l 393 (730)
..+.| ...++.|+|+++++.+++++-.+.+++.|.-+++++.+++ ..+.+........++.|+++|+++|+++.+ +
T Consensus 331 ~~~~d~~~A~~~alra~la~~~~~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~v 410 (650)
T PF04632_consen 331 PLHRDWPLALRNALRAFLAILIAGLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFV 410 (650)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122 3457899999999999999988889999999999988887 688888899999999999999999998876 3
Q ss_pred hcch--hHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhheecccCCCCc-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 004796 394 FERF--LPIRFLSLIPWFIFTAFLRRSRMYGQAGGISAVIGAVLILGRKNFGPP-SEFAIARIVETFIGLSCSIMIDLLF 470 (730)
Q Consensus 394 ~~~~--~~l~~l~L~~wi~~~~fl~~~~~Yg~ag~ita~~~~iiil~~~~~~~p-~~~A~~Ri~ei~IGiviallV~~ll 470 (730)
.|+. .+...+++++.+++..++.....|.+.|.-..+ ..++.+...+.... ......+..-+++|++++.++..++
T Consensus 411 lP~~~~f~~L~l~l~~~l~~~~~~~~~p~~~~~g~~~~v-~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li 489 (650)
T PF04632_consen 411 LPHLDGFPLLALVLAPFLFLGGLLMARPRTAYIGLGFAV-FFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRLI 489 (650)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH-HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3442 233445555555555565544445443221111 11222221121111 2678889999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHH
Q 004796 471 QPTRASTLAKVQLSKSLATLHDCIG 495 (730)
Q Consensus 471 ~P~ra~~~lr~~L~~~l~~l~~~~~ 495 (730)
||.++....|+.+....+.+.+...
T Consensus 490 ~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 490 RPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhh
Confidence 9999999898888888885555443
No 12
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=9.1e-13 Score=156.30 Aligned_cols=165 Identities=21% Similarity=0.270 Sum_probs=135.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 004796 320 KVKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLP 399 (730)
Q Consensus 320 ~~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~ 399 (730)
.+.+..+++++|+.+|+.++++++++++.++++|+++|+++|++|+.|+.+.+++.|++||++|..+++++..++.+.|.
T Consensus 5 ~~~~~~~~~~lr~~~a~~la~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~~p~ 84 (674)
T COG1289 5 RPTNADWRYALRTFLAACLALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQEPW 84 (674)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHh----hhhhhhh-hhHHHHHhhhhheecccCCCCcH---HHHHHHHHHHHHHHHHHHHHhhccc
Q 004796 400 IRFLSLIPWFIFTAFLR----RSRMYGQ-AGGISAVIGAVLILGRKNFGPPS---EFAIARIVETFIGLSCSIMIDLLFQ 471 (730)
Q Consensus 400 l~~l~L~~wi~~~~fl~----~~~~Yg~-ag~ita~~~~iiil~~~~~~~p~---~~A~~Ri~ei~IGiviallV~~ll~ 471 (730)
+..+++..|+++|+... +...|+. .++||+. ++. ......+|. +.+++|..++.+|+.|+-.+....+
T Consensus 85 ~f~~~~~~~~~l~~~~~~~~~~~~~~a~~la~yT~~---~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 160 (674)
T COG1289 85 LFLLLLTLWLGLCTAIGSLYRTIASYAFVLAGYTAL---IIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPVVPLLES 160 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---Hhc-cccccccHHHHHHHHHHHHHHHHHHHHHhccchHhhh
Confidence 87888899999997655 2333332 3445554 333 211334452 8899999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHH
Q 004796 472 PTRASTLAKVQLSKSLA 488 (730)
Q Consensus 472 P~ra~~~lr~~L~~~l~ 488 (730)
|.+....+.+.+....+
T Consensus 161 ~~~~~~~L~~~l~~~~~ 177 (674)
T COG1289 161 PSRLYQALANYLEAKSR 177 (674)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 98876666665555444
No 13
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.56 E-value=4.5e-14 Score=131.87 Aligned_cols=124 Identities=25% Similarity=0.420 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Q 004796 338 LAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLIPWFIFTAFLRR 417 (730)
Q Consensus 338 La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~~wi~~~~fl~~ 417 (730)
+|.+++.+++.+|++|+++|++++++|+.+++.+++.+|++||++|+++|+++..+++++ ....+.++.+.+...+++
T Consensus 1 ~a~~i~~~~~~~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 78 (128)
T PF13515_consen 1 LAFFIAQWLGLPHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN-YVLILIVFLLMFLIFYFL- 78 (128)
T ss_pred ChhhHHHHHcCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHH-
Confidence 356788889999999999999999999999999999999999999999999999888885 333333444443344444
Q ss_pred hhhhhhh-hHHHHHhhhhheeccc---CCCCcHHHHHHHHHHHHHHHHHHHHH
Q 004796 418 SRMYGQA-GGISAVIGAVLILGRK---NFGPPSEFAIARIVETFIGLSCSIMI 466 (730)
Q Consensus 418 ~~~Yg~a-g~ita~~~~iiil~~~---~~~~p~~~A~~Ri~ei~IGiviallV 466 (730)
.+.|+.. +.+|.. ++++... ..+++.+.+..|+.++++|+++++++
T Consensus 79 ~~~y~~~~~~~t~~---~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 SKNYAIAQIFITVM---VVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred hccHHHHHHHHHHH---HHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 3455442 333332 2222211 13455689999999999999999874
No 14
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.56 E-value=7.4e-14 Score=134.15 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 004796 327 VPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLI 406 (730)
Q Consensus 327 ~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~ 406 (730)
...+|+++|+.++++++.+++.++|++|++++++.+||+...|++.+++|+.|+++|+++|+++..+++.+|....+.++
T Consensus 5 ~r~iKtaiA~~la~~ia~~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~v~ 84 (141)
T PF06081_consen 5 MRTIKTAIAAFLAILIAQLLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSIGLAVI 84 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999998888776666666
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004796 407 PWFIFTAFLRRSRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLLF 470 (730)
Q Consensus 407 ~wi~~~~fl~~~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~ll 470 (730)
..+..|..++....-. .+.++ .+.++. ..+.+..++..|+.++++|++++++||+++
T Consensus 85 i~i~~~~~l~~~~~~~-~a~v~----~~~i~~--~~~~~~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 85 ITIPICNWLKLGEGII-VAAVT----FVHILL--SGSDSFSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHhCCCCeeh-HHHHH----HHHHHH--cCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6666666666432111 11121 122233 233334559999999999999999999864
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.03 E-value=1.1e-06 Score=100.27 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=160.1
Q ss_pred hhcc-ccccchhHHHHHHHHHHHHHHHHHH------HhcCCCCcchhHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHH
Q 004796 315 SNWS-MKVKSKRLVPAFKCSLSLGLAVLFG------LLYSKPNGIWSGLPVAISFA-AAREATFKVANIKAQGTVLGTVY 386 (730)
Q Consensus 315 ~~w~-~~~~~~~l~~AlK~alA~~La~~la------~~~~l~~g~WA~lTv~iV~q-p~~G~T~~~~~~RilGTvlGav~ 386 (730)
..|. .+++.+.++.-+|++++..+++.+. .+++ ..+|.+++..+++.- -.+|..+...+.=++|+.+|..+
T Consensus 4 p~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g-~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~ 82 (459)
T PF10337_consen 4 PAWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLG-TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAW 82 (459)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhc-chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4576 4589999999999999999998874 3444 678888875544432 24678888899999999999988
Q ss_pred HHHHHHHhcc------------------------hhH------------H---HHHHHHHHHHHHH----HHhhh-hhhh
Q 004796 387 GVLGCFLFER------------------------FLP------------I---RFLSLIPWFIFTA----FLRRS-RMYG 422 (730)
Q Consensus 387 g~l~~~l~~~------------------------~~~------------l---~~l~L~~wi~~~~----fl~~~-~~Yg 422 (730)
|++..++... .+. + ..++.++|+++.. ++|.. ..|-
T Consensus 83 ~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~~~ 162 (459)
T PF10337_consen 83 GLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPKLN 162 (459)
T ss_pred HHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcchH
Confidence 8877764421 111 0 0123344554443 44421 1121
Q ss_pred hhhHHHHHhhhhheec--ccCCC-CcHHHHHHHHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhhh-
Q 004796 423 QAGGISAVIGAVLILG--RKNFG-PPSEFAIARIVETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSMS- 498 (730)
Q Consensus 423 ~ag~ita~~~~iiil~--~~~~~-~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l~- 498 (730)
. +.+...+...+.+. +.... .+..++..=+.-..+|+++++++++++||.+.+..+.+.+.+.++.+.+.+..-.
T Consensus 163 ~-~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~ 241 (459)
T PF10337_consen 163 F-PVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRN 241 (459)
T ss_pred H-HHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222211111111 11111 2335555556677899999999999999999999999999988888877666431
Q ss_pred ---ccC-C---c----hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 004796 499 ---LQS-S---Q----ASWLENQKRLKMQVTELAKFIGEAEVEPNFWFFPFHIACYSKLLGTLTKMVDLLLFAAHSV 564 (730)
Q Consensus 499 ---~~~-~---~----~~l~e~~~~l~~~L~~L~~ll~eA~~Ep~~~~~pf~~~~y~~ll~sl~Rl~dlL~~~~~a~ 564 (730)
... + . ..+++...++...+..++.-+.++..|-. .++++.+.++.+...++++.--+..+....
T Consensus 242 ~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis--~grl~~~Dl~~i~~~lr~l~~~~~gL~~~~ 316 (459)
T PF10337_consen 242 FLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEIS--YGRLSPDDLKPIFSLLRSLMIPLSGLSSFC 316 (459)
T ss_pred HHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHe--eecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 1 33445567788888889999999999987 567888888888887777766555554433
No 16
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=98.83 E-value=6.7e-05 Score=88.51 Aligned_cols=428 Identities=13% Similarity=0.115 Sum_probs=203.7
Q ss_pred hhhHHHhhhhhHHHHHHhCCCccchhh-HHHHHHHHHHHhhccCCCchhHHHHHhhchheeeEE--EEecCCccccceec
Q 004796 3 LYATVQTVGPAILSLKLIGPARFTSTT-TALAVALAAYVVALPEGTHMKAKRIALGQIVITYVI--GFVNGERTEAVMHP 79 (730)
Q Consensus 3 l~~t~~~~~~~~~~l~~~~~~~~~~~~-~~~~va~~~f~v~~p~~t~~v~krial~~i~i~~v~--~~~~~~~t~~i~~p 79 (730)
+.||+.|..-+++..++.++..+.... .++|+++..++-.+-. ++.+-.+-|+..+.+.|+ ..-|++. ++ .
T Consensus 69 i~GTliGa~~~l~l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r--~~~sY~~~LaGyTa~iI~~~~~~~p~~---~f-~ 142 (652)
T PRK10631 69 IIGTFIGCIAALVIIIATIRAPLLMILLCCIWAGFCTWISSLVR--VENSYAWGLAGYTALIIVITIQPEPLL---TP-Q 142 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhccCCchH---HH-H
Confidence 358999999998888887655544332 3355555555444433 334555666666665553 2223322 21 1
Q ss_pred hhHH--HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHhhhhhhhHHHHH
Q 004796 80 LHVA--ASTAVGVFACVLALSLPYPRLACCQVKKNCKLLSENSSERLKLYVKAFCAEDNTSALASISQAKLLTIGGTKFI 157 (730)
Q Consensus 80 ~~v~--~~~~lG~~~~vla~llP~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~~~~~~s~~k~l~~a~~~~l 157 (730)
.-+. .-+++|++++.++..+-+|+-+...+.+..++...++...+...... .+..+. -..+.+.+.+..
T Consensus 143 ~A~~R~~Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~---~~~~~~--~~~~~~L~~di~---- 213 (652)
T PRK10631 143 FAVERCSEIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH---GDKEEV--DKAWGDLVRRTT---- 213 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc---Cccchh--hHHHHHHHHHHH----
Confidence 2222 67899999999998888899999999999999888877666533221 221111 123333334333
Q ss_pred HHHHhhccccccccccccccccccCChhhhhhhcc-----ccchhHHHHHHhcccCCcccccchHHHHHHHhhHHHHHHH
Q 004796 158 QNIKRYQESMKWERLPLKFLRSYYMNPGEKLQDLE-----IPLKGMQMAVTSVTSFPVQILDGELKECVKKLDEHISLTI 232 (730)
Q Consensus 158 ~~i~~~~~~~~wE~~~~~~f~~~~~~~~~~~~~L~-----~~Lr~m~~al~~~~~~p~~i~d~e~~~~L~~~~~~i~~~l 232 (730)
.++.......||-...+ ...+.+..|. +-.++++.-+..... |-.+ .+++...+.. ..
T Consensus 214 -~le~lr~~~~~e~~~~r-------~~~~~l~~L~~~~l~l~~~al~~~l~~~~~-~~~~-~~~l~~ll~~----~~--- 276 (652)
T PRK10631 214 -ALNGMRSNLMMESSRWQ-------RANRRLKALNTLSLTLITQACETYLIQNTR-PELI-TDTFRELFDT----PV--- 276 (652)
T ss_pred -HHHHHHHhhccCCcchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Cccc-hHHHHHHHhc----cc---
Confidence 44445555566633322 1222222221 111111111111110 1111 1112212210 00
Q ss_pred HhhhhcCCCCCcCcchHHHHHHHHhccCCC--ccccccchH--HHH--HHHHHhhhhhCCCCCCCcccccccccccCCCC
Q 004796 233 KQAQSCDSLTVPESNAEDIMKFLQTLQNIP--TTTQELSSY--FFL--FCMKLLQWKSSPNQSTNCLKDDTVKEYEGSSN 306 (730)
Q Consensus 233 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~--fFl--f~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (730)
.+..+..+....+...++... ....++..+ -.. +++..+..+...-. +... .....+
T Consensus 277 ---------~~~~~~~~~l~~lr~~~~~~~~~~~~~~l~~~~~~~~r~~~L~~~~~~~~~~~-----~~~~---~~~~~~ 339 (652)
T PRK10631 277 ---------ETPQDVHKQLKRLRRVIAWTGERETPVTIYSWVGAATRYLLLKKGVISNTKIS-----ATEE---EILQGE 339 (652)
T ss_pred ---------cchhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHhhhhhhh-----hhhh---hhcccc
Confidence 000000001111111111100 000111100 011 11111221110000 0000 000000
Q ss_pred CcchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhc--CChhHHHHHHHHHHHHHHHHH
Q 004796 307 GFSFKEVWSNWSMKVKSKRLVPAFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFA--AAREATFKVANIKAQGTVLGT 384 (730)
Q Consensus 307 ~~~~k~~~~~w~~~~~~~~l~~AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~q--p~~G~T~~~~~~RilGTvlGa 384 (730)
... + ..|. ...+....++|++++++++..+=.+-+++.|.-+++.+.+++- .....-...+.+=+.||++|.
T Consensus 340 ~~~-~---~~~~--~~h~A~~~glRa~~ai~~~~~fWI~TgW~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~ 413 (652)
T PRK10631 340 PVV-K---VESA--ERHHAMINGWRTTLATALGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAAL 413 (652)
T ss_pred ccc-c---cccc--hHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 000 0 0010 1123577788999888888888777789999888776666543 222223334555567777777
Q ss_pred HHHHHHHHH-hcc---hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhheecccCCCCc-HHHHHHHHHHHHHH
Q 004796 385 VYGVLGCFL-FER---FLPIRFLSLIPWFIFTAFLRRSRMYGQAGGISAVIGAVLILGRKNFGPP-SEFAIARIVETFIG 459 (730)
Q Consensus 385 v~g~l~~~l-~~~---~~~l~~l~L~~wi~~~~fl~~~~~Yg~ag~ita~~~~iiil~~~~~~~p-~~~A~~Ri~ei~IG 459 (730)
++|++..+. .|+ ..+...+++.+.++++..+...+.+|-.|.. +..+.+++..+.... ....+..-+..++|
T Consensus 414 ~~a~l~~f~vLP~i~~~f~lL~laLap~~~~~g~~~~~~~~~~lg~~---i~f~~~l~l~n~~~~d~~~FlN~alA~v~G 490 (652)
T PRK10631 414 PLGALYFMVIIPNTQQSMLLLCISLGVLGFFIGIEVQKRRLGSLGAL---ASTINILVLDNPMTFHFSQFLDSALGQIVG 490 (652)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhcccHHHHHHHH---HHHHHHhccCCCCCcCHHHHHHHHHHHHHH
Confidence 777666543 333 2334445555554444444444445422221 111222221122111 25667778888999
Q ss_pred HHHHHHHhhcccCCcchHHHHHHHHHHHH
Q 004796 460 LSCSIMIDLLFQPTRASTLAKVQLSKSLA 488 (730)
Q Consensus 460 iviallV~~ll~P~ra~~~lr~~L~~~l~ 488 (730)
++++.++..++.|.......|+-+.....
T Consensus 491 i~~A~l~f~lirp~~~~r~~rrL~~~~~~ 519 (652)
T PRK10631 491 CFLALIVILLVRDNSRDRTGRVLLNQFVS 519 (652)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999998766666554444443
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.57 E-value=1.2e-05 Score=86.07 Aligned_cols=176 Identities=16% Similarity=0.103 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHHH
Q 004796 378 QGTVLGTVYGVLGCFLFERFLPIRFLSLIPWFIFTAFLRR-SRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVET 456 (730)
Q Consensus 378 lGTvlGav~g~l~~~l~~~~~~l~~l~L~~wi~~~~fl~~-~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei 456 (730)
+.|++|..++.+++.+...+|++..+.++++.++++++.. ...|+..|..+.+ .+++.+. ...+ ...++.+..-+
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll-~~v~t~~--~~~~-~~~~~~~~~l~ 78 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLGVYGPRAATIGFATLL-VAVYTMA--GPSP-GPEALEHALLF 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHh--CCCc-chHHHHHHHHH
Confidence 3455555344444444455566666667777766666642 1222222322222 1111122 1221 23788899999
Q ss_pred HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhhhccC------Cchh----HHHHHHHHHHHHHHHHHHHHH
Q 004796 457 FIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSMSLQS------SQAS----WLENQKRLKMQVTELAKFIGE 526 (730)
Q Consensus 457 ~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l~~~~------~~~~----l~e~~~~l~~~L~~L~~ll~e 526 (730)
++|.++++++++++||.++.+..|+.+++++..++++++.-.... +.+. +...+.++...++..+..+..
T Consensus 79 ~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~~ 158 (284)
T PF12805_consen 79 LAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFFDPDQHDDDEQLRIELAQQQIKVNEALEQARELLLR 158 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988742211 1111 122345566666667776654
Q ss_pred hhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 004796 527 AEVEPNFWFFPFHIACYSKLLGTLTKMVDLLLFAA 561 (730)
Q Consensus 527 A~~Ep~~~~~pf~~~~y~~ll~sl~Rl~dlL~~~~ 561 (730)
.+. ++ ...+....++++..+-.+.|+.+.+.
T Consensus 159 ~r~-~~---~~~~~~~~~~ll~~~~~a~Dl~E~~~ 189 (284)
T PF12805_consen 159 RRR-SG---RGKPSTYGRRLLLLFFEAVDLFERAL 189 (284)
T ss_pred hhc-cc---CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 432 21 11122333455555555555554443
No 18
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=98.36 E-value=3.1e-05 Score=80.51 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=79.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHhhhccCC------ch-------hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 004796 471 QPTRASTLAKVQLSKSLATLHDCIGSMSLQSS------QA-------SWLENQKRLKMQVTELAKFIGEAEVEPNFWFFP 537 (730)
Q Consensus 471 ~P~ra~~~lr~~L~~~l~~l~~~~~~l~~~~~------~~-------~l~e~~~~l~~~L~~L~~ll~eA~~Ep~~~~~p 537 (730)
+|.+++..+|+.+++++..+++.+..+...+. +. ..++...++...|..++.+++.++.||++ .+|
T Consensus 2 ~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l-~G~ 80 (229)
T PF10334_consen 2 RPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSL-KGR 80 (229)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC-CCC
Confidence 69999999999999999999999887743211 00 12234567788899999999999999995 999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004796 538 FHIACYSKLLGTLTKMVDLLLFAAHSVGFL 567 (730)
Q Consensus 538 f~~~~y~~ll~sl~Rl~dlL~~~~~a~~~l 567 (730)
||...|++++..+++|.+.+..+..+...+
T Consensus 81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l 110 (229)
T PF10334_consen 81 FPKETYQRLLELCQNILDLLSLLSYVSTRL 110 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998887776554
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.34 E-value=0.00013 Score=87.22 Aligned_cols=170 Identities=13% Similarity=-0.039 Sum_probs=103.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 004796 322 KSKRLVPAFKCSLSLGLAVLFGLLYSKPN-GIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPI 400 (730)
Q Consensus 322 ~~~~l~~AlK~alA~~La~~la~~~~l~~-g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l 400 (730)
.+..+.+++|+.+|+..+.++.++++... +.=+.+.++...-.+..+.++.-+.+++-|++...++.+.+.+...+|++
T Consensus 4 ~~~~~~~~l~v~ia~~~~~~~~~~~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~ 83 (701)
T TIGR01667 4 LNQKLVYCLPVFIALMGAELRIWWFGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWL 83 (701)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 45678899999999999888888876443 33333444444445666777666666666666555555555554555665
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhhhhh--HHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccCCcchH
Q 004796 401 RFLSLIPWFIFTAFLR-RSRMYGQAG--GISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLLFQPTRAST 477 (730)
Q Consensus 401 ~~l~L~~wi~~~~fl~-~~~~Yg~ag--~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~~ 477 (730)
..+.+++..++.+.+. .+..|+..+ +..+.++++ ++ .+.+ ...+.--.-+++|.+++.+++++.++-++.+
T Consensus 84 ~~~~l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytm--l~---~~~~-~~w~~~pllll~GalwY~l~sll~~~l~p~r 157 (701)
T TIGR01667 84 FPFLLTLLTFGFILLGALGQRYATIAFASLLAAIYTM--LG---AGEV-PVWFIEPLLILAGTLWYGLLTLIWFLLFPNQ 157 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH--cC---cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444433332222222 233344221 121121211 22 1211 1223355567889999999999888888778
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 004796 478 LAKVQLSKSLATLHDCIGSM 497 (730)
Q Consensus 478 ~lr~~L~~~l~~l~~~~~~l 497 (730)
.+++.+++++..++++++.-
T Consensus 158 p~q~~La~~y~~La~yL~aK 177 (701)
T TIGR01667 158 PLQESLSRLYRELAEYLEAK 177 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999987764
No 20
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.24 E-value=0.00054 Score=81.96 Aligned_cols=172 Identities=10% Similarity=-0.003 Sum_probs=114.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 004796 322 KSKRLVPAFKCSLSLGLAVLFGLLYSKPN-GIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPI 400 (730)
Q Consensus 322 ~~~~l~~AlK~alA~~La~~la~~~~l~~-g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l 400 (730)
.+..+.+++|+.+|+..+..++++++..+ +.=..+.++...-.+..+.++.-+.+++-|+++..++.+.+.+...+|++
T Consensus 4 ~~~~~~~~lri~ia~~~~~~~~~~~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~l 83 (704)
T TIGR01666 4 LNAKVIYTIPIFIALNGAAVGIWFFDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWL 83 (704)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 45678899999999999988888876433 33334445555556777778777888888888877777777666666766
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccCCcchHHH
Q 004796 401 RFLSLIPWFIFTAFLR-RSRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLLFQPTRASTLA 479 (730)
Q Consensus 401 ~~l~L~~wi~~~~fl~-~~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~~~l 479 (730)
..+.+++..+..+.+. ....|+..|.-+.+++..-+++ .+.+ ...+..-.-.++|.+++.+++++.|+-++.+.+
T Consensus 84 f~~~l~~~tf~~~mlga~G~Rya~Iaf~tLliaiytmlg---~~~~-~~w~~~pllll~GalwY~llsl~~~~l~p~rp~ 159 (704)
T TIGR01666 84 FAVGLTVSTFGFIMLGAVGQRYATIAFGSLLVALYTMLG---YIEV-NVWFIQPVMLLCGTLWYSVVTLIVHLFFPNRPV 159 (704)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---cccc-chHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 5554444333333332 2223544333333322122222 1222 223447788899999999999999888888889
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004796 480 KVQLSKSLATLHDCIGSM 497 (730)
Q Consensus 480 r~~L~~~l~~l~~~~~~l 497 (730)
++.+++++..++++++.-
T Consensus 160 q~~LA~~y~~La~yL~ak 177 (704)
T TIGR01666 160 QENLAKAFCQLAEYLETK 177 (704)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 21
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=98.18 E-value=2.3e-05 Score=87.65 Aligned_cols=189 Identities=15% Similarity=0.149 Sum_probs=118.9
Q ss_pred hhHHHhhhhhHHHHHHh---CCCccchh-hHHHHHHHHHHHhhccCCCchhHHHHH------hhchheeeEEEEecCCcc
Q 004796 4 YATVQTVGPAILSLKLI---GPARFTST-TTALAVALAAYVVALPEGTHMKAKRIA------LGQIVITYVIGFVNGERT 73 (730)
Q Consensus 4 ~~t~~~~~~~~~~l~~~---~~~~~~~~-~~~~~va~~~f~v~~p~~t~~v~kria------l~~i~i~~v~~~~~~~~t 73 (730)
.||+.+-+.++...|+. |+ . +-. ...+.+++-+|+..+..+.|.+.+|+. +..+.++-|.+|..++
T Consensus 68 lGTl~aG~La~~~~~la~~~g~-~-~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~-- 143 (406)
T PF11744_consen 68 LGTLLAGILAFGVSWLASLSGD-P-GEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDE-- 143 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-c-chhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcch--
Confidence 57888888888888874 22 1 111 233555555555556666566665544 4445666666653322
Q ss_pred ccceechhHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHhhcccchhh--------HHHHHHH
Q 004796 74 EAVMHPLHVAASTAVGVFACVLALSLPYPRLACCQVKKNCKLLSENSSERLKLYVKAFCAEDNTS--------ALASISQ 145 (730)
Q Consensus 74 ~~i~~p~~v~~~~~lG~~~~vla~llP~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~--------~~~~~s~ 145 (730)
.+..+..=....++|++.|++..++-||.+|..++++...+..+.+.+.+...++.|+..+..+ -..+-..
T Consensus 144 -~~~~A~~R~~~I~iGv~i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~ 222 (406)
T PF11744_consen 144 -FLMLAVWRLLTIVIGVAICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQG 222 (406)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHh
Confidence 2333333346779999999999999999999999999999999999999999999999653221 0111111
Q ss_pred hhhhhhhHHHHHHHHHhhccccccccccccccccccCChhhhhhhccccchhHHHHHHh
Q 004796 146 AKLLTIGGTKFIQNIKRYQESMKWERLPLKFLRSYYMNPGEKLQDLEIPLKGMQMAVTS 204 (730)
Q Consensus 146 ~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~f~~~~~~~~~~~~~L~~~Lr~m~~al~~ 204 (730)
=|...+ .-++.+.......||..-++| + ...|++.+.++..-||--.+.+..
T Consensus 223 yk~vl~----Sk~~eesL~~~A~WEP~HG~f-~--f~~Pw~~Y~kig~~lR~cay~v~A 274 (406)
T PF11744_consen 223 YKSVLN----SKSQEESLANFARWEPPHGRF-R--FRHPWKQYLKIGALLRHCAYCVEA 274 (406)
T ss_pred hhHHhC----CcccHHHHhhhhhhcccccCC-c--cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 111111 123455567888999877764 3 444555555666666655543333
No 22
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=97.32 E-value=0.0038 Score=60.16 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 004796 329 AFKCSLSLGLAVLFGLLYSKPNGIWSGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLIPW 408 (730)
Q Consensus 329 AlK~alA~~La~~la~~~~l~~g~WA~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~~w 408 (730)
++|.+.+.+++..++..++.+.|+-+++-.++.+.+..--+.+...+=+..+++=+..|.++..++.++|....+.++..
T Consensus 2 ~LRia~g~~l~l~~~~~~~~~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~ 81 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGWPLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLL 81 (140)
T ss_pred eeehhHHHHHHHHHHHHHCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 57899999999999999999999999999988886666667777788888888888899999999999887654444333
Q ss_pred HHHHHHHh-hhhhhhhhhHHHHHhhhhheecccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc
Q 004796 409 FIFTAFLR-RSRMYGQAGGISAVIGAVLILGRKNFGPPSEFAIARIVETFIGLSCSIMIDLL 469 (730)
Q Consensus 409 i~~~~fl~-~~~~Yg~ag~ita~~~~iiil~~~~~~~p~~~A~~Ri~ei~IGiviallV~~l 469 (730)
...+.+.. +...+.. |.... +..+++.. -...+...+.++......|+++++++.++
T Consensus 82 ~~~~f~~~~~~~~~l~-~~~~l-v~~~ii~~--f~~~~~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 82 FFWSFYRMSRGPKFLF-GTMLL-VGLSIIPV--FASYNTADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHhCCCchHH-HHHHH-HHHHHHHH--HHhcCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 33333332 2222222 21111 11111111 01123467888899999999999888764
No 23
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=95.25 E-value=0.061 Score=61.66 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=115.7
Q ss_pred hhhHHHhhhhhHHHHHHh---CCC----------------ccc------------------h---hhHHHHHHHHHHHhh
Q 004796 3 LYATVQTVGPAILSLKLI---GPA----------------RFT------------------S---TTTALAVALAAYVVA 42 (730)
Q Consensus 3 l~~t~~~~~~~~~~l~~~---~~~----------------~~~------------------~---~~~~~~va~~~f~v~ 42 (730)
+.|++.|.+-+++.+|.. .|+ ..+ . ++.+++...+.++.+
T Consensus 73 ~~g~~~g~~~~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~ 152 (459)
T PF10337_consen 73 LLGVCLGWAWGLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHG 152 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHH
Confidence 567888888888888883 333 111 1 123455555566666
Q ss_pred ccCCCchh-HHHHHhhchheeeEEEEecCCc--c-ccceechhHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHh
Q 004796 43 LPEGTHMK-AKRIALGQIVITYVIGFVNGER--T-EAVMHPLHVAASTAVGVFACVLALSLPYPRLACCQVKKNCKLLSE 118 (730)
Q Consensus 43 ~p~~t~~v-~krial~~i~i~~v~~~~~~~~--t-~~i~~p~~v~~~~~lG~~~~vla~llP~P~lA~~~~~~~~~~~~~ 118 (730)
+-.+..|- .==+-++.|++.....+ +.. + .....+..+....++|+.+++++.++=||..+...+.+.+..+.+
T Consensus 153 ~lRa~~p~~~~~~I~~~I~~~i~~t~--g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~ 230 (459)
T PF10337_consen 153 WLRAKNPKLNFPVIFGSIFVDIFLTY--GPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLR 230 (459)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHh--CcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHH
Confidence 55433442 22223333333222222 221 2 345556677789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccc--hhhHHHHHHHhhhhhhhHHHHHHHHHhhccccccccccccccc-cccCChhhhhhhccccc
Q 004796 119 NSSERLKLYVKAFCAED--NTSALASISQAKLLTIGGTKFIQNIKRYQESMKWERLPLKFLR-SYYMNPGEKLQDLEIPL 195 (730)
Q Consensus 119 ~~~~~l~~~v~~f~~~~--~~~~~~~~s~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~f~-~~~~~~~~~~~~L~~~L 195 (730)
-+.+.++.-.+.|-..+ ++....--.+.+....+....+..++.....+..|-...+ +. +-.+.-.+.+.++..|+
T Consensus 231 ~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~gr-l~~~Dl~~i~~~lr~l~~~~ 309 (459)
T PF10337_consen 231 LLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGR-LSPDDLKPIFSLLRSLMIPL 309 (459)
T ss_pred HHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeec-CCHHHHHHHHHHHHHHHHHH
Confidence 99999999888776543 2221111233333344444456666666665666632222 11 11111112344555555
Q ss_pred hhHHHHHHh
Q 004796 196 KGMQMAVTS 204 (730)
Q Consensus 196 r~m~~al~~ 204 (730)
.||...+++
T Consensus 310 ~gL~~~~~~ 318 (459)
T PF10337_consen 310 SGLSSFCDL 318 (459)
T ss_pred HHHHHHHHH
Confidence 555555555
No 24
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=92.76 E-value=20 Score=44.05 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=21.6
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHH-------HHHHHHHHHHh
Q 004796 675 RSQVVLSLSALGYCMQGLIRETK-------LIEEGIKELVQ 708 (730)
Q Consensus 675 ~~~~~~~~~~~~fc~~~~~~e~~-------~~~~~~~~l~~ 708 (730)
+.-++--+..++=-|+++++|.. +.|+.|++.+.
T Consensus 435 R~~va~Ql~~~s~~l~~~a~e~~~~~~~~~~~e~~i~~~L~ 475 (764)
T TIGR02865 435 RRLVAEQLKGVAESVEDIAKEINLEIVFHQLLEEKIIRALN 475 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 34444456678888888888864 35555655554
No 25
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=85.82 E-value=2.9 Score=43.49 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=69.9
Q ss_pred CcchhhHHHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhH--HHHHHHhhhhhhhHHHHHHHHHhhccccccccccccc
Q 004796 100 PYPRLACCQVKKNCKLLSENSSERLKLYVKAFCAED-NTSA--LASISQAKLLTIGGTKFIQNIKRYQESMKWERLPLKF 176 (730)
Q Consensus 100 P~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~-~~~~--~~~~s~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~ 176 (730)
|||..|.+.+|+.+......++..+-.+++.+..+. +.+. ..-.-............|.+++....-+.||-...+-
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~ 80 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGR 80 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 999999999999999999999999999998888753 2111 0001112222334456788888899999999553332
Q ss_pred cc-cccCChhhhhhhccccchhHHHHHHhc
Q 004796 177 LR-SYYMNPGEKLQDLEIPLKGMQMAVTSV 205 (730)
Q Consensus 177 f~-~~~~~~~~~~~~L~~~Lr~m~~al~~~ 205 (730)
|- +.|.+--+..++|..-|-.|..+.+..
T Consensus 81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l 110 (229)
T PF10334_consen 81 FPKETYQRLLELCQNILDLLSLLSYVSTRL 110 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43 344444444556666666666655544
No 26
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=80.70 E-value=9.7 Score=40.84 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=77.7
Q ss_pred hHHHhhhhhHHHHHHhCCCccchhhHHHHHHHHHHHhhccCCCchhHHHHHhhchheeeEEEEecCCccccceechhHHH
Q 004796 5 ATVQTVGPAILSLKLIGPARFTSTTTALAVALAAYVVALPEGTHMKAKRIALGQIVITYVIGFVNGERTEAVMHPLHVAA 84 (730)
Q Consensus 5 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~va~~~f~v~~p~~t~~v~krial~~i~i~~v~~~~~~~~t~~i~~p~~v~~ 84 (730)
.|..|...+.+...+.+|+- +....++++.+|+.++-..-++-+-.|+++...+ +|.+...+... + .+..-+.
T Consensus 4 ~~~~~~~~~s~~~~l~~~~~---~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~-~v~t~~~~~~~-~--~~~~~~~ 76 (284)
T PF12805_consen 4 ATLLCFALASLLVGLLFPYP---WLLILVLALLTFFFGMLGVYGPRAATIGFATLLV-AVYTMAGPSPG-P--EALEHAL 76 (284)
T ss_pred HHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHhCCCcc-h--HHHHHHH
Confidence 44445544445555555553 3334555566666666644466777887766543 33333333321 1 3334557
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 004796 85 STAVGVFACVLALSLPYPRLACCQVKKNCKLLSENSSERLKLYVKAF 131 (730)
Q Consensus 85 ~~~lG~~~~vla~llP~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~f 131 (730)
...+|.+...+..++=||..-.+-+|+.+...-+..++-++.-.+-|
T Consensus 77 l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 77 LFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788888888888888888889999999999999999998877666
No 27
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.63 E-value=9.5 Score=35.27 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 004796 367 EATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLS 404 (730)
Q Consensus 367 G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~ 404 (730)
...++-+..=+.|+++|+++|+++=.+++..|+..++.
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ 80 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVF 80 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34556677788999999999999999999888754433
No 28
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.74 E-value=14 Score=35.55 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcch-hHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004796 332 CSLSLGLAVLFGLLYSKPNGIW-SGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCF 392 (730)
Q Consensus 332 ~alA~~La~~la~~~~l~~g~W-A~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~ 392 (730)
.++++.+...+..+++.+++.+ +.++++.++.. .+..+.-+.+|++=|++|.++|+++=.
T Consensus 79 ~~l~v~i~i~~~~~l~~~~~~~~a~v~~~~i~~~-~~~~~~~~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 79 IGLAVIITIPICNWLKLGEGIIVAAVTFVHILLS-GSDSFSYALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred HHHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777888887755 44444444433 333344499999999999999987643
No 29
>COG4129 Predicted membrane protein [Function unknown]
Probab=67.83 E-value=36 Score=37.71 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=65.7
Q ss_pred hhhHHHhhhhhHHHHHHhCCCccchhhHH-HHHHHHHHHhhccCCCchhHHHHHhhchheeeEEEEecCCccccceechh
Q 004796 3 LYATVQTVGPAILSLKLIGPARFTSTTTA-LAVALAAYVVALPEGTHMKAKRIALGQIVITYVIGFVNGERTEAVMHPLH 81 (730)
Q Consensus 3 l~~t~~~~~~~~~~l~~~~~~~~~~~~~~-~~va~~~f~v~~p~~t~~v~krial~~i~i~~v~~~~~~~~t~~i~~p~~ 81 (730)
+.|++-|++.++++..+.|.+-+..|+++ .++.+.++.-.-+ .++. ++++ ++++++..-.. ...-+.
T Consensus 61 ~~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~~~~~~----g~~~-~~~~-~~~ii~~~~~~-----~~~~~~- 128 (332)
T COG4129 61 LLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLEN----GVVP-ITVG-VLHILVAAMIP-----LFLIFN- 128 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccc----chhH-HHHH-HHHHHHHcccc-----hhHHHH-
Confidence 56888899999999999998887777644 4444443322211 1111 1111 11222221111 122222
Q ss_pred HHHHHHHHHHHHHHH-hhCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHh
Q 004796 82 VAASTAVGVFACVLA-LSLPYPRLACCQVKKNCKLLSENSSERLKLYVKA 130 (730)
Q Consensus 82 v~~~~~lG~~~~vla-~llP~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~ 130 (730)
=...+.+|+..+++. ..+|=|....+.-+++.....+++...+--.++.
T Consensus 129 r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~kv~~~~~~il~~~~~~l~~ 178 (332)
T COG4129 129 RFLLVFVGVGVAFLVNLVMPPPDYELKLYRAKVEAILASILWEVASYLRD 178 (332)
T ss_pred HHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346778888887777 5555566666666667776666666665555444
No 30
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.21 E-value=3.6e+02 Score=33.52 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhc
Q 004796 455 ETFIGLSCSIMIDLL 469 (730)
Q Consensus 455 ei~IGiviallV~~l 469 (730)
-+++|++++++.+-.
T Consensus 152 ~il~g~i~aF~~n~~ 166 (806)
T PF05478_consen 152 IILFGVICAFVANQQ 166 (806)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345688888777654
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=58.34 E-value=93 Score=26.43 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHh
Q 004796 454 VETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGS 496 (730)
Q Consensus 454 ~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~ 496 (730)
.-.++|.+++.++.+++-|.+ ...+|+.+.+....+.+-...
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~s-G~e~R~~l~~~~~~~~~~~~~ 44 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKS-GKETREKLKDKAEDLKDKAKD 44 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999954 667888888877755554443
No 32
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=55.77 E-value=20 Score=42.83 Aligned_cols=110 Identities=18% Similarity=0.252 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhh----hccCC-chh-HHHHHHHHHHHH
Q 004796 444 PPSEFAIARIVETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSM----SLQSS-QAS-WLENQKRLKMQV 517 (730)
Q Consensus 444 ~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l----~~~~~-~~~-l~e~~~~l~~~L 517 (730)
.|.+..-.|-..+- -.+.-++.+++|.+++...+.+++.+++.+.+..... ...-+ ++. .-.....+...+
T Consensus 378 ap~~~~~~~~~~l~---rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~ 454 (625)
T KOG4711|consen 378 APRDLRNKFRLTLR---RVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNL 454 (625)
T ss_pred CcHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhH
Confidence 44455544433332 7788888999999999999999998765443333221 11000 111 111123334556
Q ss_pred HHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004796 518 TELAKFIGEAEVEPNFWFFPFHIACYSKLLGTLTKMVDLL 557 (730)
Q Consensus 518 ~~L~~ll~eA~~Ep~~~~~pf~~~~y~~ll~sl~Rl~dlL 557 (730)
.+....+.+...||.+ ..+++...|..+...+....+++
T Consensus 455 ~~~~~~~~~~~~e~~~-~~~~~~ek~~~~~~~~~~~~~~~ 493 (625)
T KOG4711|consen 455 QAARELLNEVNHEPNL-KGTFPVEKYNELIHKLLSLGILL 493 (625)
T ss_pred HHHHHHhhhhccchhh-cccccchhHHHHHHHhhcchhhh
Confidence 6777788889999984 78899999988888776655554
No 33
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=53.76 E-value=77 Score=26.93 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHh
Q 004796 84 ASTAVGVFACVLALSLPYPRLACCQVKKNCKLLSENSSERLKLYVKA 130 (730)
Q Consensus 84 ~~~~lG~~~~vla~llP~P~lA~~~~~~~~~~~~~~~~~~l~~~v~~ 130 (730)
...++|+++..++.+|.-|. .-+++|+.++...+++.+.++-+.+.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888 56999999999999888887655544
No 34
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=53.04 E-value=63 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004796 366 REATFKVANIKAQGTVLGTVYGVLGCFLF 394 (730)
Q Consensus 366 ~G~T~~~~~~RilGTvlGav~g~l~~~l~ 394 (730)
.+++.....+|..--++|+++|.++..+.
T Consensus 25 ~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~ 53 (128)
T PF13515_consen 25 LSPSYGATVNRAIQRILGTLIGVVLGLLL 53 (128)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999877653
No 35
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=52.56 E-value=3.3e+02 Score=29.35 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=26.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhcccCCcchHHHHHH
Q 004796 447 EFAIARI-VETFIGLSCSIMIDLLFQPTRASTLAKVQ 482 (730)
Q Consensus 447 ~~A~~Ri-~ei~IGiviallV~~ll~P~ra~~~lr~~ 482 (730)
-.++.|+ +.+++|++++-.....+|-..-...+...
T Consensus 81 ~~~~~R~~lAvliaivIs~pl~l~iF~~eI~~~l~~~ 117 (301)
T PF14362_consen 81 LQALPRLLLAVLIAIVISEPLELKIFEKEIDQKLDEI 117 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567787 78889999999999888776544444433
No 36
>PRK11677 hypothetical protein; Provisional
Probab=48.54 E-value=74 Score=30.72 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcccCC-cchHHHHHHHHHHHHHHHHH
Q 004796 454 VETFIGLSCSIMIDLLFQPT-RASTLAKVQLSKSLATLHDC 493 (730)
Q Consensus 454 ~ei~IGiviallV~~ll~P~-ra~~~lr~~L~~~l~~l~~~ 493 (730)
+-.+||++|+.++..+.-|. +....+.+++.+.-..+.++
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Y 48 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEY 48 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888887775 34445555555554444333
No 37
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=36.38 E-value=3.7e+02 Score=25.43 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 004796 373 ANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLIPWFIFTAFL 415 (730)
Q Consensus 373 ~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~~wi~~~~fl 415 (730)
+--=+.||++|-+++.-+..+|. |.+.-.++...+....|+
T Consensus 22 aGlTL~gtvigL~vatPLfvifS--PVlVPaai~~~l~~~Gfl 62 (118)
T PF01277_consen 22 AGLTLAGTVIGLAVATPLFVIFS--PVLVPAAIAIGLAVAGFL 62 (118)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 33344566666665555555554 343333333334334444
No 38
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=32.36 E-value=8e+02 Score=27.94 Aligned_cols=73 Identities=19% Similarity=0.338 Sum_probs=48.2
Q ss_pred hhhhhhhHHHH-Hhhhhhe-eccc--CCCCcHHHHHHHHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHH
Q 004796 419 RMYGQAGGISA-VIGAVLI-LGRK--NFGPPSEFAIARIVETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCI 494 (730)
Q Consensus 419 ~~Yg~ag~ita-~~~~iii-l~~~--~~~~p~~~A~~Ri~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~ 494 (730)
..||.-|++-+ .+.++.+ ..+. ...++.+.-+.=..+.+.|+..++.++. -+.+++.+.+-+...++..
T Consensus 220 ~~yGWQG~llasllnsi~l~~arQ~~~fs~l~dLll~l~~Qal~Gl~LGiaIqr-------lrelnqrL~~EL~~~raLa 292 (497)
T COG3851 220 WHYGWQGALLASLLNSIALTIARQTWRFSHLVDLLLSLLAQALTGLGLGIAIQR-------LRELNQRLQKELARNRALA 292 (497)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHH
Confidence 45777555432 2333322 2211 2455668888888999999999999887 3667788888888777777
Q ss_pred Hhhh
Q 004796 495 GSMS 498 (730)
Q Consensus 495 ~~l~ 498 (730)
+.+.
T Consensus 293 eqLi 296 (497)
T COG3851 293 EQLI 296 (497)
T ss_pred HHHH
Confidence 7764
No 39
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=31.03 E-value=3e+02 Score=25.94 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 004796 453 IVETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIG 495 (730)
Q Consensus 453 i~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~ 495 (730)
++-+++|.+++.++.+++-|.+ ...+|+.+.+..+.+.+...
T Consensus 8 l~G~liGgiiGa~aaLL~AP~s-GkelR~~~K~~~~~~~~~ae 49 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKS-GKELRKKLKKSGDALFELAE 49 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhHHHHH
Confidence 4567889999999999999976 45566655555554444443
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.78 E-value=3.6e+02 Score=25.58 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q 004796 454 VETFIGLSCSIMIDLLFQPT 473 (730)
Q Consensus 454 ~ei~IGiviallV~~ll~P~ 473 (730)
+-.+||++|++++..+..+.
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34457777777777776665
No 41
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=29.72 E-value=4.7e+02 Score=24.48 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=35.8
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 004796 354 SGLPVAISFAAAREATFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLIPWFIFTAFLR 416 (730)
Q Consensus 354 A~lTv~iV~qp~~G~T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~~wi~~~~fl~ 416 (730)
...++.+...|+. -+.+=++=+.|.++++++|+++..++++.+....+++..-+.+...++
T Consensus 7 gAsa~llf~~p~s--p~aqP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~ 67 (120)
T PF04982_consen 7 GASAVLLFGAPSS--PLAQPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTR 67 (120)
T ss_pred HHHHHHhhcCCCC--chhchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHc
Confidence 3333334444542 233556668999999999999999987755433344333333333333
No 42
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=29.58 E-value=2.8e+02 Score=30.47 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 004796 371 KVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLIPWFIFTAFLR 416 (730)
Q Consensus 371 ~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~~wi~~~~fl~ 416 (730)
..=|.=+.|.++.+++|+.+.+++++.+....+++...++..++++
T Consensus 79 AQPwsiiGGNlvaAlvgvtva~~vgd~~la~~lavsLaI~~M~~~r 124 (382)
T COG3448 79 AQPWSIIGGNLVAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALR 124 (382)
T ss_pred ccchhhhcchHHHHHHhhhhhhhhCChHHHHHHHHHHHHHHHHHhc
Confidence 3447778999999999999999988865555666666666666776
No 43
>PF13047 DUF3907: Protein of unknown function (DUF3907)
Probab=29.33 E-value=2.7e+02 Score=27.31 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhHHHH-HHHHHhhhhhcc
Q 004796 539 HIACYSKLLGTLTKMVDLLLFAAHSVGFLEQDSQRIATSWKNEVHELDSDL-ELLKEKVGSSIK 601 (730)
Q Consensus 539 ~~~~y~~ll~sl~Rl~dlL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~l~ 601 (730)
+..-|+.++..++||+--+.....+.+.+.+. +.|+ .....+.| +.+|.||..=+.
T Consensus 35 ~~~yY~~~Ls~lRrLlVf~E~~~e~~~v~Lr~-~~F~------~~aAEktLY~vYHqCI~eFF~ 91 (148)
T PF13047_consen 35 EEAYYKGLLSDLRRLLVFCEEGYEACGVLLRR-EPFR------KEAAEKTLYKVYHQCIEEFFY 91 (148)
T ss_pred cHHHHHHHHHHHHHHHHhhHhHHHHHHHHHcC-CCcc------hhHHHHHHHHHHHHHHHHHcC
Confidence 34568889999999887777666666666553 4444 22233444 678998865443
No 44
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.47 E-value=1.4e+02 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004796 374 NIKAQGTVLGTVYGVLGCF 392 (730)
Q Consensus 374 ~~RilGTvlGav~g~l~~~ 392 (730)
..|++|.++|-++|++...
T Consensus 8 ~~~iiG~~~G~ila~l~l~ 26 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLILT 26 (51)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3455666666666554443
No 45
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.47 E-value=2e+02 Score=33.19 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=22.1
Q ss_pred cchhHHHHHHhhcCChhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 004796 351 GIWSGLPVAISFAAAREATFKVANIKA--QGTVLGTVYGVLGCFL 393 (730)
Q Consensus 351 g~WA~lTv~iV~qp~~G~T~~~~~~Ri--lGTvlGav~g~l~~~l 393 (730)
.|+++-.+.+.+...+....-+++.|. +|.++.+++|++...+
T Consensus 354 AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL 398 (430)
T PF06123_consen 354 AYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL 398 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444442 3455555555555444
No 46
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=25.92 E-value=48 Score=36.13 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004796 373 ANIKAQGTVLGTVYGVLGCFL 393 (730)
Q Consensus 373 ~~~RilGTvlGav~g~l~~~l 393 (730)
-+=|+.|+++|+++|++...+
T Consensus 343 ~~IrinGallG~liG~~~~~i 363 (367)
T PF04286_consen 343 QWIRINGALLGGLIGLLQYLI 363 (367)
T ss_pred HhhhhhhHHHHHHHHHHHHHH
Confidence 367899999999999987654
No 47
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.75 E-value=67 Score=27.24 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004796 373 ANIKAQGTVLGTVYGVLGCFLF 394 (730)
Q Consensus 373 ~~~RilGTvlGav~g~l~~~l~ 394 (730)
..--+.||++|++++.++.+++
T Consensus 49 n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 49 NTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678888888888776653
No 48
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=23.30 E-value=1.5e+03 Score=28.28 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHhh
Q 004796 453 IVETFIGLSCSIMIDLLFQPTRASTLAKVQLSKSLATLHDCIGSM 497 (730)
Q Consensus 453 i~ei~IGiviallV~~ll~P~ra~~~lr~~L~~~l~~l~~~~~~l 497 (730)
++..+||++++++.+- ..+.++.+..+++.++...+
T Consensus 163 ~i~~ligv~~~fvtnk---------~v~~~i~~s~~~m~~~~~dl 198 (865)
T KOG4331|consen 163 AIELLIGVFRAFVTNK---------PVMLRIKNSLEDMRRLATDL 198 (865)
T ss_pred HHHHHHHHHHHHHHhh---------HHHHhhhccHHHHHHHHHHH
Confidence 5667788888887763 34555555555555554443
No 49
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=22.92 E-value=7.4e+02 Score=27.22 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=13.2
Q ss_pred ccchhcCCCCCCCCCCCcchhHHHHHHHHH
Q 004796 625 SYDLELGKSKNPNGISDLDEAAMGKLICSY 654 (730)
Q Consensus 625 ~~d~e~~~~~~~~~~~~~~~~~~~~~~~sf 654 (730)
++|-|-|... ++.| |.|.+-..|.+|
T Consensus 260 k~de~lg~~~---rf~~-d~~~l~~~i~~~ 285 (302)
T PF07139_consen 260 KYDEELGRAA---RFTC-DPEQLKKSIMSF 285 (302)
T ss_pred hhHHHHhHhh---hccc-CHHHHHHHHHhc
Confidence 3444444433 4444 666666666554
No 50
>PRK14414 membrane protein; Provisional
Probab=22.70 E-value=6.2e+02 Score=26.38 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 004796 327 VPAFKCSLSLGLAVL 341 (730)
Q Consensus 327 ~~AlK~alA~~La~~ 341 (730)
.-.+|..+++.++..
T Consensus 63 ~D~lKG~l~v~la~~ 77 (210)
T PRK14414 63 VDIGKGALAMAVANW 77 (210)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777776643
No 51
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=22.33 E-value=4.9e+02 Score=32.49 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 004796 374 NIKAQGTVLGTVYGVLGCFLFE 395 (730)
Q Consensus 374 ~~RilGTvlGav~g~l~~~l~~ 395 (730)
+.=+.|.++|.++|+++..+..
T Consensus 210 ~~i~~GiliG~vvG~l~~~Ll~ 231 (810)
T TIGR00844 210 WECIFGSILGCIIGYCGRKAIR 231 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677777777777766553
No 52
>PHA00094 VI minor coat protein
Probab=22.15 E-value=3.9e+02 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 004796 373 ANIKAQGTVLGTVYGVLGCFLFER 396 (730)
Q Consensus 373 ~~~RilGTvlGav~g~l~~~l~~~ 396 (730)
++.|.+|++.+.++|++.-++...
T Consensus 9 aL~rfi~~la~~~~gyfa~f~tk~ 32 (112)
T PHA00094 9 ALARFLGTLAANLIGYFAKFFTRG 32 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988776443
No 53
>PRK10490 sensor protein KdpD; Provisional
Probab=21.41 E-value=7e+02 Score=31.43 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 004796 458 IGLSCSIMI 466 (730)
Q Consensus 458 IGiviallV 466 (730)
+|++++.++
T Consensus 487 va~v~~~l~ 495 (895)
T PRK10490 487 VGLVIGNLT 495 (895)
T ss_pred HHHHHHHHH
Confidence 444444333
No 54
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=21.39 E-value=5.6e+02 Score=28.70 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004796 373 ANIKAQGTVLGTVYGVLGCFL 393 (730)
Q Consensus 373 ~~~RilGTvlGav~g~l~~~l 393 (730)
+..-+++|+.|+.+++....+
T Consensus 46 ~ar~lLstia~smitv~~~~f 66 (371)
T PF10011_consen 46 GARTLLSTIAGSMITVTGFVF 66 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455678999998888765443
No 55
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=21.37 E-value=1.6e+02 Score=34.15 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhHHHHHHHHHhhhhhccchhhHhhhhhHHHHHHHHhhcccccc
Q 004796 548 GTLTKMVDLLLFAAHSVGFLEQDSQRIATSWKNEVHELDSDLELLKEKVGSSIKCFEDVTTIKSLATIEKELEKNNISYD 627 (730)
Q Consensus 548 ~sl~Rl~dlL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~d 627 (730)
++-.|-.++|...... .+-+++.+ .+++-.++...+++....+... .+-.++...+++.|-||+.+ ++-|
T Consensus 251 GsnaRCIa~L~afqev----i~Dy~TP~--~ktlsrdLt~~i~~qv~~L~~c--RPLs~SmgNAiRflK~eI~~--L~~s 320 (556)
T KOG1467|consen 251 GSNARCIAMLQAFQEV----IKDYTTPP--EKTLSRDLTAAISPQVSFLTQC--RPLSISMGNAIRFLKNEISK--LPIS 320 (556)
T ss_pred CccHHHHHHHHHHHHH----HHhccCCC--ccccchhhHhhhhhHHHHHhhc--CCccchhhHHHHHHHHHHhh--CCCC
Confidence 4446766666444333 23333332 1333344444444433333332 22225666688999999865 3333
Q ss_pred hhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004796 628 LELGKSKNPNGISDLDEAAMGKLICSYLQHAKELVDKIKATEGEKELRSQVVLSLSALGYCMQGLIRETKLIEEGIKELV 707 (730)
Q Consensus 628 ~e~~~~~~~~~~~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fc~~~~~~e~~~~~~~~~~l~ 707 (730)
+ +..+. ++++..-|..|++.-....++.--.---+.++.-++++.|+..=.++....|+.++.+.++=+|
T Consensus 321 ~------~e~ea----Ke~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvV 390 (556)
T KOG1467|consen 321 L------SESEA----KEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVV 390 (556)
T ss_pred C------ChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEE
Confidence 3 11111 5666677777777666555554432222344555666666666667888888888877665444
Q ss_pred hccCC
Q 004796 708 QWENP 712 (730)
Q Consensus 708 ~~~~~ 712 (730)
-=-+|
T Consensus 391 VDSRP 395 (556)
T KOG1467|consen 391 VDSRP 395 (556)
T ss_pred EeCCC
Confidence 43333
No 56
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.09 E-value=9e+02 Score=30.55 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 004796 379 GTVLGTVYG 387 (730)
Q Consensus 379 GTvlGav~g 387 (730)
|-++|+++|
T Consensus 48 ~~~~~~~~~ 56 (1092)
T PRK09776 48 GILLSCSLG 56 (1092)
T ss_pred HHHHHHHHH
Confidence 333333333
No 57
>PRK11715 inner membrane protein; Provisional
Probab=20.64 E-value=3e+02 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=19.6
Q ss_pred cchhHHHHHHhhcCChhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 004796 351 GIWSGLPVAISFAAAREATFKVANIKA--QGTVLGTVYGVLGCFL 393 (730)
Q Consensus 351 g~WA~lTv~iV~qp~~G~T~~~~~~Ri--lGTvlGav~g~l~~~l 393 (730)
.|+++-.+.+.+...+....-+++.|. .|.++.+++|++...+
T Consensus 360 AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lL 404 (436)
T PRK11715 360 AYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGLL 404 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 445544444444444444444444442 2444444555544433
Done!