Query 004796
Match_columns 730
No_of_seqs 242 out of 1126
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y6d_A Phosphorelay protein LU 24.8 1.8E+02 0.006 25.8 7.1 63 643-705 25-91 (120)
2 2olt_A Hypothetical protein; s 23.6 5E+02 0.017 25.0 15.3 32 534-565 77-108 (227)
3 3qbr_A SJA, sjchgc06286 protei 11.3 3.6E+02 0.012 26.0 5.9 81 594-689 46-132 (179)
4 2k1k_A Ephrin type-A receptor 11.2 3.3E+02 0.011 19.4 4.3 11 378-388 14-24 (38)
5 4dx5_A Acriflavine resistance 11.1 1.4E+03 0.049 27.3 12.8 21 453-473 1004-1024(1057)
6 3arc_J Photosystem II reaction 9.4 2.1E+02 0.0071 20.8 2.6 7 377-383 12-18 (40)
7 2l34_A TYRO protein tyrosine k 8.9 4.5E+02 0.015 18.2 4.1 13 379-391 7-19 (33)
8 2p22_A Suppressor protein STP2 8.7 7.4E+02 0.025 23.6 7.1 42 688-729 71-114 (174)
9 1j8b_A YBAB; hypothetical prot 8.6 1.2E+02 0.0042 26.8 1.5 19 688-706 9-27 (112)
10 1p58_A Major envelope protein 8.5 2.6E+02 0.0088 31.2 4.2 38 369-411 431-468 (495)
No 1
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=24.85 E-value=1.8e+02 Score=25.76 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh--hh--hhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004796 643 DEAAMGKLICSYLQHAKELVDKIKATEGEKELRS--QV--VLSLSALGYCMQGLIRETKLIEEGIKE 705 (730)
Q Consensus 643 ~~~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~fc~~~~~~e~~~~~~~~~~ 705 (730)
+++.+++++..|++.+.+.++.+....+.+.+.. .. -+==+|-.|....+..-+.++|+..++
T Consensus 25 g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 25 GSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 3677889999999999999999986333332110 11 111144445557888888888888665
No 2
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=23.62 E-value=5e+02 Score=24.98 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=25.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004796 534 WFFPFHIACYSKLLGTLTKMVDLLLFAAHSVG 565 (730)
Q Consensus 534 ~~~pf~~~~y~~ll~sl~Rl~dlL~~~~~a~~ 565 (730)
...|++......+...++|+.|.+..+...+.
T Consensus 77 ~~~P~dredi~~L~~~lD~I~D~~~~~a~~~~ 108 (227)
T 2olt_A 77 LFMPVERTDLLELLTQQDKIANKAKDISGRVI 108 (227)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789888888889999999999877766553
No 3
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=11.31 E-value=3.6e+02 Score=26.01 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=44.1
Q ss_pred HhhhhhccchhhHhh-hhhHHHHHHHHhhcc-cccchhcC----CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 004796 594 EKVGSSIKCFEDVTT-IKSLATIEKELEKNN-ISYDLELG----KSKNPNGISDLDEAAMGKLICSYLQHAKELVDKIKA 667 (730)
Q Consensus 594 ~~~~~~l~~~~~~~~-~~~l~~l~~~~~~~~-~~~d~e~~----~~~~~~~~~~~~~~~~~~~~~sf~~~~~~~~~~~~~ 667 (730)
..-...|.|-.+... .+.|.++.+|++.+. ..+.++.. ...|.+.+ .++.+..+|.+-++|.++
T Consensus 46 ~~~~~~l~~dp~~~~v~~~L~~iGDEle~r~e~q~ml~~l~~ql~~~~~~~l------t~~tA~~~F~~Va~eLFD---- 115 (179)
T 3qbr_A 46 DNTNIDLTCVPNGQEIIHSLLQLVGDFNQRFSQTHEIEPVAQSLGIDSDKPV------DKTALEIFYLEILNGLFE---- 115 (179)
T ss_dssp HHHTCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHTCSSSSCC------CHHHHHHHHHHHHHHHTS----
T ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhccccccCC------CchHHHHHHHHHHHHHhC----
Confidence 333455554444433 347888888887641 12222221 01111122 245577778777776653
Q ss_pred hhhhhhhhhhhhhhHHHHHHhH
Q 004796 668 TEGEKELRSQVVLSLSALGYCM 689 (730)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~fc~ 689 (730)
.+.|..+..+.+||-.+
T Consensus 116 -----GiNWGRIVaLfaFgg~L 132 (179)
T 3qbr_A 116 -----KLNWGRIVAMFAFLRIL 132 (179)
T ss_dssp -----SCCHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHH
Confidence 25788888888887643
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.15 E-value=3.3e+02 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 004796 378 QGTVLGTVYGV 388 (730)
Q Consensus 378 lGTvlGav~g~ 388 (730)
.|.++|+++|+
T Consensus 14 AGiVvG~v~gv 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeehHHHHHH
Confidence 34444444443
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=11.05 E-value=1.4e+03 Score=27.29 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q 004796 453 IVETFIGLSCSIMIDLLFQPT 473 (730)
Q Consensus 453 i~ei~IGiviallV~~ll~P~ 473 (730)
-.-+.+|++++++++.++-|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999888774
No 6
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=9.41 E-value=2.1e+02 Score=20.84 Aligned_cols=7 Identities=43% Similarity=0.454 Sum_probs=4.5
Q ss_pred HHHHHHH
Q 004796 377 AQGTVLG 383 (730)
Q Consensus 377 ilGTvlG 383 (730)
++||+.|
T Consensus 12 lvgtv~G 18 (40)
T 3arc_J 12 IVATVAG 18 (40)
T ss_dssp HHHHHHH
T ss_pred eeeeehh
Confidence 4667666
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=8.89 E-value=4.5e+02 Score=18.25 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 004796 379 GTVLGTVYGVLGC 391 (730)
Q Consensus 379 GTvlGav~g~l~~ 391 (730)
||+.|-++|-++.
T Consensus 7 gaIaGIVvgdi~~ 19 (33)
T 2l34_A 7 GVLAGIVVGDLVL 19 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHH
Confidence 5666666665444
No 8
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=8.71 E-value=7.4e+02 Score=23.63 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc--CCCCCcccchhhhcccccc
Q 004796 688 CMQGLIRETKLIEEGIKELVQWE--NPSSNVNLLEISCKINALY 729 (730)
Q Consensus 688 c~~~~~~e~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 729 (730)
-++++.+++..+++.+.++-.|+ ||+..+|..++-+....++
T Consensus 71 ~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~ 114 (174)
T 2p22_A 71 TMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGL 114 (174)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHH
Confidence 34557777777777666766666 7777888888776655443
No 9
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=8.59 E-value=1.2e+02 Score=26.84 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004796 688 CMQGLIRETKLIEEGIKEL 706 (730)
Q Consensus 688 c~~~~~~e~~~~~~~~~~l 706 (730)
+|+++||.++++++.++++
T Consensus 9 nm~~mmkqaq~mQ~~m~~~ 27 (112)
T 1j8b_A 9 GLGGLMKQAQQMQEKMQKM 27 (112)
T ss_dssp -CCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999875
No 10
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=8.54 E-value=2.6e+02 Score=31.17 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 004796 369 TFKVANIKAQGTVLGTVYGVLGCFLFERFLPIRFLSLIPWFIF 411 (730)
Q Consensus 369 T~~~~~~RilGTvlGav~g~l~~~l~~~~~~l~~l~L~~wi~~ 411 (730)
++-|++..++|.+..+++|-+-++ +-+++-++++|+++
T Consensus 431 sigKavh~vfg~~F~~lFGG~sw~-----~kilig~ll~WlG~ 468 (495)
T 1p58_A 431 SIGKALHQVFGAIYGAAFSGVSWT-----MKILIGVIITWIGM 468 (495)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHH-----HHHHHHHHHheEEe
Confidence 445778888888888887776332 22445567788876
Done!