Query 004796
Match_columns 730
No_of_seqs 242 out of 1126
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 06:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004796.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004796hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y6da_ a.24.10.5 (A:) Phospho 19.2 1.4E+02 0.01 23.4 7.4 63 643-705 19-85 (114)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 10.9 1E+02 0.0075 19.9 3.0 7 377-383 6-12 (34)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 7.7 6.7E+02 0.049 24.2 9.9 23 453-475 406-428 (444)
4 d2a0ba_ a.24.10.1 (A:) Aerobic 6.7 3.9E+02 0.028 20.6 6.1 59 643-701 20-82 (118)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.0 5.2E+02 0.038 23.6 7.2 14 441-454 81-98 (248)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.3 7E+02 0.051 23.8 8.3 24 451-474 77-100 (405)
7 d2e74d2 f.23.12.1 (D:12-45) IS 5.2 2.1E+02 0.015 18.1 2.4 11 378-388 17-27 (34)
8 d1j8ba_ d.222.1.1 (A:) Hypothe 4.8 1.2E+02 0.0091 23.6 1.5 18 689-706 1-18 (92)
9 d2a7wa1 a.204.1.4 (A:4-94) Pho 4.4 5.7E+02 0.041 19.7 5.3 60 612-679 3-62 (91)
10 d1wh9a_ d.52.3.1 (A:) Ribosoma 3.8 2E+02 0.015 22.6 1.9 39 686-724 47-85 (92)
No 1
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}
Probab=19.22 E-value=1.4e+02 Score=23.40 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhc---hhhhhhhhhhh-hhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004796 643 DEAAMGKLICSYLQHAKELVDKIKA---TEGEKELRSQV-VLSLSALGYCMQGLIRETKLIEEGIKE 705 (730)
Q Consensus 643 ~~~~~~~~~~sf~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~fc~~~~~~e~~~~~~~~~~ 705 (730)
++|.+.+++..|++...+.++++.. ++|-+.++... -+--+|--|.+..+..-..+||+..++
T Consensus 19 G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~d~~~l~~~aH~LKGsa~~~Ga~~L~~~~~~lE~~~~~ 85 (114)
T d1y6da_ 19 GSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 85 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHc
Confidence 4677888999999999999998876 33334332211 122234456678888889999988875
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.91 E-value=1e+02 Score=19.87 Aligned_cols=7 Identities=43% Similarity=0.454 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 004796 377 AQGTVLG 383 (730)
Q Consensus 377 ilGTvlG 383 (730)
++||+.|
T Consensus 6 lv~tv~G 12 (34)
T d2axtj1 6 IVATVAG 12 (34)
T ss_dssp HHHHHHH
T ss_pred Eeeehhh
Confidence 3455555
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=7.71 E-value=6.7e+02 Score=24.24 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhcccCCcc
Q 004796 453 IVETFIGLSCSIMIDLLFQPTRA 475 (730)
Q Consensus 453 i~ei~IGiviallV~~ll~P~ra 475 (730)
+.-+.+.++++..++.++.|++-
T Consensus 406 ~~p~~ia~~~a~~v~~~~~~~si 428 (444)
T d1otsa_ 406 ILPMIITGLGATLLAQFTGGKPL 428 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCh
Confidence 45567788888888888887663
No 4
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=6.69 E-value=3.9e+02 Score=20.64 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhc---hhhhhhhhhhhhhhHH-HHHHhHHHHHHHHHHHHH
Q 004796 643 DEAAMGKLICSYLQHAKELVDKIKA---TEGEKELRSQVVLSLS-ALGYCMQGLIRETKLIEE 701 (730)
Q Consensus 643 ~~~~~~~~~~sf~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~fc~~~~~~e~~~~~~ 701 (730)
+.+.+.+++..|++...+.++.+.. +.|.++++...=-.-| |--+.+..+..-..+||+
T Consensus 20 g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~LKgsa~~~G~~~l~~~~~~lE~ 82 (118)
T d2a0ba_ 20 GPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS 82 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3667889999999999998888865 3444443222222222 222334455555555543
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=5.2e+02 Score=23.56 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=7.2
Q ss_pred CCCCcH----HHHHHHHH
Q 004796 441 NFGPPS----EFAIARIV 454 (730)
Q Consensus 441 ~~~~p~----~~A~~Ri~ 454 (730)
+++..+ +-|+.++.
T Consensus 81 Ny~tgh~ltk~~Ai~~l~ 98 (248)
T d2r6gf1 81 NYSSTNQLTFERAQEVLL 98 (248)
T ss_dssp CCSSTTCBCHHHHHHHHT
T ss_pred EcCCCccccHHHHHHHHH
Confidence 555443 55555554
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.32 E-value=7e+02 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCc
Q 004796 451 ARIVETFIGLSCSIMIDLLFQPTR 474 (730)
Q Consensus 451 ~Ri~ei~IGiviallV~~ll~P~r 474 (730)
.=+..+.+++++++++..++.|..
T Consensus 77 ~~l~tt~iA~~igl~~~~~~~pg~ 100 (405)
T d2nwwa1 77 YYLLTSAFAVTLGIIMARLFNPGA 100 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 345667788889999999998843
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.21 E-value=2.1e+02 Score=18.13 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 004796 378 QGTVLGTVYGV 388 (730)
Q Consensus 378 lGTvlGav~g~ 388 (730)
.||.+|+++-+
T Consensus 17 tg~alg~lypv 27 (34)
T d2e74d2 17 TGVALGALYPL 27 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhhH
Confidence 44555554444
No 8
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=4.81 E-value=1.2e+02 Score=23.62 Aligned_cols=18 Identities=17% Similarity=0.639 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004796 689 MQGLIRETKLIEEGIKEL 706 (730)
Q Consensus 689 ~~~~~~e~~~~~~~~~~l 706 (730)
|+++||.++++++.|++.
T Consensus 1 m~~mmkqaq~mq~~m~~~ 18 (92)
T d1j8ba_ 1 LGGLMKQAQQMQEKMQKM 18 (92)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 578999999999888775
No 9
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=4.36 E-value=5.7e+02 Score=19.66 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcccccchhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhh
Q 004796 612 LATIEKELEKNNISYDLELGKSKNPNGISDLDEAAMGKLICSYLQHAKELVDKIKATEGEKELRSQVV 679 (730)
Q Consensus 612 l~~l~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (730)
|.+|++-+++|... .|..+-+..|=+++++++..-+-..+-|.+.-.. ++|.+++-+|.+
T Consensus 3 L~~L~~~i~~Rk~~-------~~~~SYt~~L~~~G~~~i~kKigEEa~E~i~A~~-~~~~~~vi~EaA 62 (91)
T d2a7wa1 3 LKNIADTLEARREA-------APQSSYVASLFHKGEDAILKKVAEEAAETLMASK-DKDKLHLVREVA 62 (91)
T ss_dssp HHHHHHHHHHGGGS-------CTTTCHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------CCcccHHHHHHhCChHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 56777777775211 1111111122256677788777666666665544 445555444443
No 10
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.77 E-value=2e+02 Score=22.61 Aligned_cols=39 Identities=5% Similarity=0.062 Sum_probs=29.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhc
Q 004796 686 GYCMQGLIRETKLIEEGIKELVQWENPSSNVNLLEISCK 724 (730)
Q Consensus 686 ~fc~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 724 (730)
|--++.=-.+..+|.+.+++....+||.-++|..||--|
T Consensus 47 GivIGrkG~~I~~L~~~l~k~~~~~~~~i~lnae~Ia~r 85 (92)
T d1wh9a_ 47 QNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATR 85 (92)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCS
T ss_pred ceeeccCchhHHHHHHHHHHHHCCCCCcEEEEEEeeccc
Confidence 444444556778888888888888999999988888543
Done!