Query 004798
Match_columns 730
No_of_seqs 288 out of 1427
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 13:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 2.1E-39 4.5E-44 372.1 10.7 596 22-730 328-989 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 3.2E-17 6.9E-22 138.7 8.5 73 19-91 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 6.9E-17 1.5E-21 136.8 8.4 73 19-93 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 1.2E-16 2.5E-21 134.9 8.8 75 19-93 1-75 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.7 4.1E-16 8.9E-21 130.4 9.3 75 19-93 1-75 (76)
6 cd01802 AN1_N ubiquitin-like d 99.7 4.3E-16 9.3E-21 141.5 9.7 79 15-93 24-102 (103)
7 cd01803 Ubiquitin Ubiquitin. U 99.7 3.9E-16 8.5E-21 130.5 8.6 75 19-93 1-75 (76)
8 cd01797 NIRF_N amino-terminal 99.6 4E-16 8.6E-21 134.9 8.2 74 19-92 1-76 (78)
9 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 4.5E-16 9.8E-21 133.3 8.4 72 18-89 1-72 (73)
10 cd01810 ISG15_repeat2 ISG15 ub 99.6 4.4E-16 9.6E-21 131.9 8.1 73 21-93 1-73 (74)
11 cd01805 RAD23_N Ubiquitin-like 99.6 8.3E-16 1.8E-20 129.8 9.1 74 19-92 1-76 (77)
12 cd01804 midnolin_N Ubiquitin-l 99.6 1.4E-15 3E-20 130.9 8.8 76 18-94 1-76 (78)
13 cd01809 Scythe_N Ubiquitin-lik 99.6 1.6E-15 3.4E-20 125.7 8.5 72 19-90 1-72 (72)
14 cd01798 parkin_N amino-termina 99.6 1.3E-15 2.7E-20 127.5 7.4 70 21-90 1-70 (70)
15 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.7E-15 5.8E-20 129.3 8.3 75 18-92 2-78 (80)
16 cd01794 DC_UbP_C dendritic cel 99.6 2.4E-15 5.2E-20 127.5 7.2 69 21-89 1-69 (70)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 5.9E-15 1.3E-19 124.0 7.8 71 19-90 1-71 (71)
18 cd01790 Herp_N Homocysteine-re 99.5 1.4E-14 3.1E-19 126.6 7.9 72 18-89 1-78 (79)
19 PF00240 ubiquitin: Ubiquitin 99.5 1.6E-14 3.4E-19 119.4 7.6 68 24-91 1-68 (69)
20 cd01796 DDI1_N DNA damage indu 99.5 4.7E-14 1E-18 119.3 7.2 68 21-88 1-70 (71)
21 cd01812 BAG1_N Ubiquitin-like 99.5 6.4E-14 1.4E-18 116.2 7.7 70 19-89 1-70 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 8.1E-14 1.7E-18 119.1 7.5 69 26-94 5-73 (76)
23 TIGR00601 rad23 UV excision re 99.5 9.2E-14 2E-18 151.1 9.4 76 19-94 1-79 (378)
24 cd01763 Sumo Small ubiquitin-r 99.5 3.3E-13 7.1E-18 118.5 10.7 83 12-94 5-87 (87)
25 cd01813 UBP_N UBP ubiquitin pr 99.5 1.6E-13 3.4E-18 117.6 7.7 69 19-88 1-72 (74)
26 KOG0005 Ubiquitin-like protein 99.4 6E-14 1.3E-18 116.9 4.5 70 19-88 1-70 (70)
27 KOG0010 Ubiquitin-like protein 99.4 1.8E-13 4E-18 150.9 9.1 79 17-96 14-92 (493)
28 KOG0003 Ubiquitin/60s ribosoma 99.4 1.9E-14 4.1E-19 131.8 -0.3 76 19-94 1-76 (128)
29 KOG0004 Ubiquitin/40S ribosoma 99.4 8.4E-14 1.8E-18 134.4 3.6 78 19-96 1-78 (156)
30 smart00213 UBQ Ubiquitin homol 99.4 1.6E-12 3.4E-17 104.4 6.9 64 19-83 1-64 (64)
31 cd01799 Hoil1_N Ubiquitin-like 99.2 1.9E-11 4E-16 105.5 7.6 68 21-89 5-74 (75)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 9.4E-12 2E-16 108.1 4.8 57 34-90 15-75 (75)
33 KOG0011 Nucleotide excision re 99.2 2.9E-11 6.2E-16 128.5 6.9 75 19-93 1-77 (340)
34 cd01769 UBL Ubiquitin-like dom 99.2 6.6E-11 1.4E-15 96.1 7.4 68 22-89 1-68 (69)
35 cd01814 NTGP5 Ubiquitin-like N 99.2 3.6E-11 7.7E-16 111.5 6.1 79 16-94 2-94 (113)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 3.2E-10 6.9E-15 94.9 8.6 71 19-89 1-72 (72)
37 cd01795 USP48_C USP ubiquitin- 98.9 2.2E-09 4.8E-14 98.0 6.6 65 29-93 15-80 (107)
38 KOG4248 Ubiquitin-like protein 98.9 2.4E-09 5.2E-14 126.2 6.8 73 20-93 4-76 (1143)
39 KOG0001 Ubiquitin and ubiquiti 98.9 1.5E-08 3.2E-13 81.0 8.8 72 21-92 2-73 (75)
40 cd01789 Alp11_N Ubiquitin-like 98.8 1.3E-08 2.7E-13 89.4 8.9 72 19-90 2-81 (84)
41 PF14560 Ubiquitin_2: Ubiquiti 98.7 6.4E-08 1.4E-12 84.7 7.8 72 19-90 2-83 (87)
42 PLN02560 enoyl-CoA reductase 98.6 5.4E-08 1.2E-12 104.0 7.9 69 19-87 1-80 (308)
43 PF13881 Rad60-SLD_2: Ubiquiti 98.6 2.2E-07 4.8E-12 86.2 9.5 76 18-93 2-91 (111)
44 cd01801 Tsc13_N Ubiquitin-like 98.5 3.5E-07 7.6E-12 78.6 6.6 68 20-87 2-74 (77)
45 cd01788 ElonginB Ubiquitin-lik 98.4 7.2E-07 1.6E-11 83.4 8.2 71 21-92 5-82 (119)
46 cd00196 UBQ Ubiquitin-like pro 98.3 1.9E-06 4E-11 64.5 7.2 67 23-89 2-68 (69)
47 cd01811 OASL_repeat1 2'-5' oli 98.3 2.7E-06 5.8E-11 74.4 7.6 72 19-91 1-77 (80)
48 PF11543 UN_NPL4: Nuclear pore 98.0 1.3E-05 2.8E-10 70.6 6.0 71 17-88 3-78 (80)
49 KOG1769 Ubiquitin-like protein 97.8 0.00026 5.7E-09 65.0 10.9 79 16-94 18-96 (99)
50 KOG1872 Ubiquitin-specific pro 97.8 4.4E-05 9.4E-10 85.3 6.8 74 18-92 3-77 (473)
51 KOG3493 Ubiquitin-like protein 97.7 1.4E-05 3.1E-10 68.3 1.7 71 19-89 2-72 (73)
52 KOG0006 E3 ubiquitin-protein l 97.7 4.8E-05 1E-09 81.6 5.7 71 19-89 1-74 (446)
53 KOG0004 Ubiquitin/40S ribosoma 97.4 6.1E-05 1.3E-09 73.8 1.2 48 100-147 1-51 (156)
54 KOG0003 Ubiquitin/60s ribosoma 97.3 5.2E-05 1.1E-09 70.6 0.2 39 105-143 8-47 (128)
55 cd01802 AN1_N ubiquitin-like d 97.2 4.1E-05 9E-10 70.1 -2.1 62 76-142 9-73 (103)
56 PF08817 YukD: WXG100 protein 97.2 0.00088 1.9E-08 58.1 6.1 70 18-87 2-78 (79)
57 KOG4495 RNA polymerase II tran 96.9 0.0023 4.9E-08 58.9 6.0 61 19-80 3-65 (110)
58 KOG0005 Ubiquitin-like protein 96.8 0.00028 6.1E-09 59.8 -0.1 41 104-144 7-48 (70)
59 PF00789 UBX: UBX domain; Int 96.7 0.012 2.5E-07 50.8 9.2 74 15-88 3-81 (82)
60 KOG4583 Membrane-associated ER 96.4 0.00053 1.2E-08 74.3 -1.4 80 14-93 5-90 (391)
61 PF10302 DUF2407: DUF2407 ubiq 96.4 0.0068 1.5E-07 55.5 5.9 57 21-77 3-64 (97)
62 cd01793 Fubi Fubi ubiquitin-li 96.3 0.00019 4.1E-09 61.1 -4.2 41 102-142 3-44 (74)
63 COG5417 Uncharacterized small 96.2 0.019 4.2E-07 50.8 7.3 70 18-87 4-80 (81)
64 smart00166 UBX Domain present 96.1 0.036 7.8E-07 48.1 8.6 71 17-87 3-78 (80)
65 cd01767 UBX UBX (ubiquitin reg 95.8 0.067 1.5E-06 46.0 8.7 68 18-87 2-74 (77)
66 PF13019 Telomere_Sde2: Telome 95.7 0.042 9.1E-07 54.8 8.3 76 19-94 1-88 (162)
67 cd01794 DC_UbP_C dendritic cel 95.6 0.00089 1.9E-08 57.2 -3.4 38 105-142 6-44 (70)
68 COG5227 SMT3 Ubiquitin-like pr 95.5 0.024 5.2E-07 51.9 5.1 77 17-93 23-99 (103)
69 PF11470 TUG-UBL1: GLUT4 regul 95.5 0.04 8.7E-07 47.3 6.2 63 25-87 3-65 (65)
70 cd01770 p47_UBX p47-like ubiqu 95.3 0.11 2.4E-06 45.7 8.6 68 18-85 4-75 (79)
71 KOG0013 Uncharacterized conser 95.2 0.031 6.7E-07 57.8 5.6 65 27-91 155-221 (231)
72 cd01772 SAKS1_UBX SAKS1-like U 95.2 0.12 2.5E-06 45.2 8.4 69 18-87 4-77 (79)
73 cd01807 GDX_N ubiquitin-like d 95.1 0.0013 2.7E-08 56.0 -4.1 38 105-142 8-46 (74)
74 PTZ00044 ubiquitin; Provisiona 94.9 0.0014 3.1E-08 55.4 -4.2 38 105-142 8-46 (76)
75 KOG1639 Steroid reductase requ 94.8 0.051 1.1E-06 57.5 5.8 69 19-87 1-76 (297)
76 cd01774 Faf1_like2_UBX Faf1 ik 94.6 0.24 5.1E-06 44.3 8.8 70 17-87 3-82 (85)
77 cd01796 DDI1_N DNA damage indu 94.5 0.0032 6.9E-08 53.6 -3.1 37 106-142 8-45 (71)
78 cd01810 ISG15_repeat2 ISG15 ub 94.1 0.0036 7.8E-08 53.3 -3.5 38 105-142 6-44 (74)
79 KOG3206 Alpha-tubulin folding 93.9 0.12 2.6E-06 53.6 6.2 73 19-91 2-82 (234)
80 cd01773 Faf1_like1_UBX Faf1 ik 93.8 0.47 1E-05 42.6 9.0 74 15-89 2-80 (82)
81 cd01771 Faf1_UBX Faf1 UBX doma 93.8 0.47 1E-05 42.0 8.9 72 16-88 2-78 (80)
82 cd01798 parkin_N amino-termina 93.3 0.0055 1.2E-07 51.5 -3.7 38 105-142 6-44 (70)
83 cd01797 NIRF_N amino-terminal 93.3 0.006 1.3E-07 53.2 -3.7 38 105-142 8-48 (78)
84 cd01791 Ubl5 UBL5 ubiquitin-li 93.1 0.0077 1.7E-07 52.1 -3.2 38 105-142 9-47 (73)
85 cd01799 Hoil1_N Ubiquitin-like 93.0 0.011 2.3E-07 51.5 -2.6 36 105-141 10-46 (75)
86 cd01800 SF3a120_C Ubiquitin-li 92.3 0.011 2.3E-07 50.8 -3.5 38 105-142 5-43 (76)
87 cd01806 Nedd8 Nebb8-like ubiq 91.7 0.013 2.8E-07 49.1 -3.7 38 105-142 8-46 (76)
88 cd01804 midnolin_N Ubiquitin-l 91.5 0.012 2.6E-07 51.1 -4.1 38 105-142 9-47 (78)
89 cd01803 Ubiquitin Ubiquitin. U 91.0 0.014 3E-07 48.9 -4.1 38 105-142 8-46 (76)
90 cd01813 UBP_N UBP ubiquitin pr 90.5 0.024 5.3E-07 49.0 -3.1 36 106-141 8-44 (74)
91 cd01805 RAD23_N Ubiquitin-like 90.0 0.022 4.8E-07 48.2 -3.8 38 105-142 8-48 (77)
92 PF09379 FERM_N: FERM N-termin 89.9 1.5 3.2E-05 37.3 7.3 68 23-90 1-77 (80)
93 cd06407 PB1_NLP A PB1 domain i 89.1 2.3 5.1E-05 37.9 8.2 71 19-90 1-81 (82)
94 cd01792 ISG15_repeat1 ISG15 ub 88.7 0.04 8.6E-07 47.8 -3.2 35 105-139 10-45 (80)
95 PF15044 CLU_N: Mitochondrial 88.7 0.68 1.5E-05 40.7 4.5 56 35-90 1-58 (76)
96 cd00754 MoaD Ubiquitin domain 88.3 2.6 5.6E-05 35.8 7.6 58 30-92 17-78 (80)
97 cd01809 Scythe_N Ubiquitin-lik 88.2 0.031 6.7E-07 46.3 -4.0 38 105-142 8-46 (72)
98 PLN02799 Molybdopterin synthas 87.8 2.6 5.6E-05 36.6 7.5 69 18-91 1-79 (82)
99 cd01812 BAG1_N Ubiquitin-like 86.7 0.072 1.6E-06 44.2 -2.7 36 107-142 9-45 (71)
100 cd06406 PB1_P67 A PB1 domain i 86.6 3.1 6.6E-05 37.5 7.3 45 20-66 4-48 (80)
101 smart00295 B41 Band 4.1 homolo 86.1 5.8 0.00013 38.6 9.7 75 17-91 2-84 (207)
102 KOG0012 DNA damage inducible p 85.9 1.3 2.9E-05 49.3 5.7 65 27-91 11-77 (380)
103 PRK06488 sulfur carrier protei 85.5 4.8 0.0001 33.7 7.6 63 19-92 1-63 (65)
104 smart00666 PB1 PB1 domain. Pho 85.2 3.4 7.3E-05 35.4 6.8 47 19-66 2-48 (81)
105 PRK06437 hypothetical protein; 85.0 5.5 0.00012 34.1 7.9 56 27-91 9-64 (67)
106 PRK08364 sulfur carrier protei 84.9 6.7 0.00014 33.6 8.4 64 18-91 4-67 (70)
107 PF14836 Ubiquitin_3: Ubiquiti 84.7 3.8 8.1E-05 37.5 7.0 65 29-94 14-84 (88)
108 cd01763 Sumo Small ubiquitin-r 84.2 0.12 2.6E-06 45.8 -2.6 38 105-142 19-57 (87)
109 cd01808 hPLIC_N Ubiquitin-like 83.1 0.1 2.2E-06 44.1 -3.4 36 106-142 9-45 (71)
110 PRK06083 sulfur carrier protei 82.8 9.1 0.0002 34.5 8.7 71 12-92 12-82 (84)
111 PF00240 ubiquitin: Ubiquitin 82.0 0.066 1.4E-06 44.3 -4.9 38 105-142 3-41 (69)
112 cd01815 BMSC_UbP_N Ubiquitin-l 82.0 0.16 3.4E-06 45.0 -2.7 27 116-142 19-49 (75)
113 PF12754 Blt1: Cell-cycle cont 81.2 0.48 1E-05 51.7 0.0 66 14-79 74-159 (309)
114 cd06409 PB1_MUG70 The MUG70 pr 80.8 4.1 8.9E-05 37.1 5.8 45 20-64 2-49 (86)
115 TIGR00601 rad23 UV excision re 79.6 0.21 4.5E-06 55.8 -3.5 38 105-142 8-49 (378)
116 PF14453 ThiS-like: ThiS-like 78.2 5.8 0.00012 33.7 5.4 56 19-90 1-56 (57)
117 cd01790 Herp_N Homocysteine-re 78.0 0.27 5.8E-06 43.8 -2.6 38 105-142 9-51 (79)
118 TIGR01687 moaD_arch MoaD famil 77.4 12 0.00025 32.8 7.5 60 29-92 16-86 (88)
119 cd06408 PB1_NoxR The PB1 domai 77.3 9.9 0.00021 34.7 7.1 47 18-66 2-48 (86)
120 KOG2086 Protein tyrosine phosp 77.1 4.1 8.9E-05 45.8 5.5 70 16-85 303-376 (380)
121 cd06398 PB1_Joka2 The PB1 doma 77.0 12 0.00026 34.2 7.6 71 20-91 2-88 (91)
122 TIGR01682 moaD molybdopterin c 77.0 17 0.00036 31.4 8.2 57 30-91 17-77 (80)
123 PF10790 DUF2604: Protein of U 77.0 7.5 0.00016 34.2 5.9 65 27-91 4-72 (76)
124 PF00564 PB1: PB1 domain; Int 76.3 9 0.00019 32.7 6.4 47 18-65 1-48 (84)
125 smart00213 UBQ Ubiquitin homol 76.2 0.18 3.8E-06 40.4 -3.9 35 108-142 10-45 (64)
126 cd01795 USP48_C USP ubiquitin- 76.1 0.43 9.4E-06 44.7 -1.9 34 109-142 16-50 (107)
127 PF11620 GABP-alpha: GA-bindin 74.4 6.9 0.00015 35.9 5.2 63 30-92 4-66 (88)
128 PF10209 DUF2340: Uncharacteri 73.2 8.3 0.00018 37.3 5.8 60 31-90 17-108 (122)
129 TIGR02958 sec_mycoba_snm4 secr 72.1 17 0.00036 41.8 8.9 75 19-94 3-84 (452)
130 cd05992 PB1 The PB1 domain is 71.2 14 0.0003 31.4 6.2 45 20-65 2-47 (81)
131 PRK05863 sulfur carrier protei 71.0 20 0.00043 30.3 7.0 58 27-92 6-63 (65)
132 PRK08053 sulfur carrier protei 69.5 35 0.00076 28.8 8.2 64 19-92 1-64 (66)
133 PF02597 ThiS: ThiS family; I 69.3 18 0.00039 30.3 6.4 61 30-92 13-75 (77)
134 PRK05659 sulfur carrier protei 68.0 32 0.0007 28.5 7.6 58 27-91 6-63 (66)
135 smart00455 RBD Raf-like Ras-bi 66.0 16 0.00035 31.7 5.5 45 21-65 2-46 (70)
136 PF12436 USP7_ICP0_bdg: ICP0-b 65.0 13 0.00029 39.1 5.9 79 14-92 64-154 (249)
137 PF00794 PI3K_rbd: PI3-kinase 64.2 40 0.00087 30.8 8.2 75 16-90 14-102 (106)
138 KOG2982 Uncharacterized conser 64.0 11 0.00023 42.1 5.0 56 33-88 352-415 (418)
139 smart00144 PI3K_rbd PI3-kinase 63.7 39 0.00085 31.4 8.0 75 17-91 16-105 (108)
140 cd01814 NTGP5 Ubiquitin-like N 61.9 0.97 2.1E-05 43.0 -2.8 31 112-142 20-58 (113)
141 cd00565 ThiS ThiaminS ubiquiti 60.7 32 0.0007 28.7 6.3 59 27-92 5-63 (65)
142 cd01760 RBD Ubiquitin-like dom 60.6 21 0.00045 31.4 5.3 45 21-65 2-46 (72)
143 cd01768 RA RA (Ras-associating 59.8 60 0.0013 28.1 8.1 63 28-90 12-85 (87)
144 cd01787 GRB7_RA RA (RAS-associ 59.7 50 0.0011 30.3 7.7 59 19-77 3-68 (85)
145 PF08337 Plexin_cytopl: Plexin 59.6 21 0.00046 42.1 6.7 78 15-92 186-291 (539)
146 PRK06944 sulfur carrier protei 57.3 65 0.0014 26.6 7.6 58 27-92 6-63 (65)
147 cd06396 PB1_NBR1 The PB1 domai 56.0 32 0.0007 31.2 5.8 36 19-55 1-38 (81)
148 KOG0001 Ubiquitin and ubiquiti 54.8 1.4 3.1E-05 34.8 -2.6 37 105-141 7-44 (75)
149 TIGR01683 thiS thiamine biosyn 54.5 57 0.0012 27.2 6.8 60 26-92 3-62 (64)
150 PRK07440 hypothetical protein; 53.1 1E+02 0.0022 26.7 8.2 64 18-91 4-67 (70)
151 PF00788 RA: Ras association ( 50.8 76 0.0016 27.2 7.3 71 21-91 5-90 (93)
152 cd06410 PB1_UP2 Uncharacterize 50.0 46 0.00099 30.9 6.0 40 23-63 17-56 (97)
153 PRK07696 sulfur carrier protei 48.2 1.1E+02 0.0024 26.1 7.7 58 27-91 6-64 (67)
154 cd01764 Urm1 Urm1-like ubuitin 48.1 54 0.0012 30.0 6.1 58 33-92 23-92 (94)
155 PF02196 RBD: Raf-like Ras-bin 47.5 74 0.0016 27.6 6.6 51 21-71 3-55 (71)
156 KOG4250 TANK binding protein k 46.8 34 0.00073 41.6 5.8 42 27-68 323-364 (732)
157 PF14732 UAE_UbL: Ubiquitin/SU 45.7 20 0.00044 32.3 3.0 56 33-88 2-67 (87)
158 cd01769 UBL Ubiquitin-like dom 45.6 1.9 4.1E-05 34.8 -3.3 36 106-141 6-42 (69)
159 PF10407 Cytokin_check_N: Cdc1 45.3 51 0.0011 29.4 5.3 62 29-91 3-71 (73)
160 KOG0007 Splicing factor 3a, su 44.2 9.7 0.00021 41.9 0.9 50 25-74 289-339 (341)
161 PRK11130 moaD molybdopterin sy 43.9 1.9E+02 0.004 25.3 8.6 54 33-91 19-78 (81)
162 PF11069 DUF2870: Protein of u 43.0 26 0.00057 32.9 3.3 34 60-94 3-38 (98)
163 PF14533 USP7_C2: Ubiquitin-sp 42.1 79 0.0017 32.6 7.0 104 29-134 34-160 (213)
164 KOG3439 Protein conjugation fa 41.4 1.1E+02 0.0024 29.6 7.2 52 17-68 29-84 (116)
165 KOG2689 Predicted ubiquitin re 41.0 65 0.0014 35.3 6.3 71 17-87 209-284 (290)
166 cd06411 PB1_p51 The PB1 domain 41.0 57 0.0012 29.5 5.0 37 29-65 7-43 (78)
167 KOG2561 Adaptor protein NUB1, 40.4 10 0.00023 43.7 0.4 74 17-90 36-111 (568)
168 KOG1364 Predicted ubiquitin re 40.3 33 0.00071 38.5 4.1 65 20-84 279-349 (356)
169 PRK11840 bifunctional sulfur c 39.5 97 0.0021 34.7 7.5 67 19-95 1-67 (326)
170 KOG0010 Ubiquitin-like protein 39.1 7.9 0.00017 44.8 -0.8 34 110-143 27-61 (493)
171 cd06397 PB1_UP1 Uncharacterize 38.3 86 0.0019 28.7 5.7 57 20-77 2-63 (82)
172 KOG2507 Ubiquitin regulatory p 38.2 1.2E+02 0.0026 35.3 8.0 78 16-93 312-394 (506)
173 PF02017 CIDE-N: CIDE-N domain 34.8 1.2E+02 0.0027 27.3 6.1 65 21-91 5-72 (78)
174 KOG3751 Growth factor receptor 34.4 92 0.002 37.0 6.6 75 19-93 189-274 (622)
175 PF02505 MCR_D: Methyl-coenzym 34.0 69 0.0015 32.3 4.8 53 18-77 67-120 (153)
176 PF14847 Ras_bdg_2: Ras-bindin 33.6 1.1E+02 0.0025 28.8 6.0 36 21-56 3-38 (105)
177 KOG4146 Ubiquitin-like protein 33.0 3E+02 0.0064 26.1 8.3 75 17-92 3-99 (101)
178 TIGR03260 met_CoM_red_D methyl 31.0 80 0.0017 31.8 4.7 53 18-77 66-118 (150)
179 COG0089 RplW Ribosomal protein 30.9 1.5E+02 0.0033 27.7 6.2 61 27-87 20-90 (94)
180 PRK05738 rplW 50S ribosomal pr 30.5 1.6E+02 0.0034 27.0 6.2 40 28-67 20-60 (92)
181 PLN02560 enoyl-CoA reductase 30.0 8 0.00017 42.3 -2.5 31 111-141 17-49 (308)
182 KOG0011 Nucleotide excision re 29.0 12 0.00026 41.6 -1.4 41 103-143 6-49 (340)
183 cd01777 SNX27_RA Ubiquitin dom 28.8 1.1E+02 0.0023 28.4 4.7 41 19-59 2-42 (87)
184 PRK01777 hypothetical protein; 27.8 3.8E+02 0.0081 24.9 8.2 67 17-92 2-78 (95)
185 PF08825 E2_bind: E2 binding d 26.5 86 0.0019 28.4 3.7 55 33-88 1-69 (84)
186 PTZ00380 microtubule-associate 26.3 1.9E+02 0.0042 28.1 6.3 73 17-89 26-104 (121)
187 cd06404 PB1_aPKC PB1 domain is 26.0 2.3E+02 0.0049 26.1 6.3 46 19-65 1-47 (83)
188 PF03671 Ufm1: Ubiquitin fold 24.7 3.1E+02 0.0067 24.9 6.7 57 32-88 19-76 (76)
189 PF12436 USP7_ICP0_bdg: ICP0-b 24.2 1.6E+02 0.0035 31.1 5.9 44 19-62 177-223 (249)
190 PF00276 Ribosomal_L23: Riboso 23.7 1.2E+02 0.0027 27.5 4.3 41 29-69 21-62 (91)
191 KOG3391 Transcriptional co-rep 23.6 3.7E+02 0.008 27.1 7.7 82 12-94 21-140 (151)
192 CHL00030 rpl23 ribosomal prote 23.3 1.8E+02 0.004 26.9 5.3 39 28-66 19-58 (93)
193 cd01611 GABARAP Ubiquitin doma 22.6 6.1E+02 0.013 24.1 8.8 57 33-90 45-106 (112)
194 PF08783 DWNN: DWNN domain; I 22.1 1.9E+02 0.0041 25.9 5.0 34 21-54 1-36 (74)
195 KOG4572 Predicted DNA-binding 21.3 1.1E+02 0.0024 38.2 4.3 62 27-88 3-68 (1424)
196 smart00266 CAD Domains present 20.9 2.3E+02 0.0051 25.5 5.3 50 38-90 18-69 (74)
197 COG5100 NPL4 Nuclear pore prot 20.6 2.4E+02 0.0052 32.8 6.6 71 19-90 1-79 (571)
198 cd01766 Ufm1 Urm1-like ubiquit 20.5 5.2E+02 0.011 23.6 7.3 60 33-92 20-80 (82)
199 KOG4261 Talin [Cytoskeleton] 20.5 1.3E+02 0.0029 37.3 4.8 108 19-133 4-121 (1003)
200 PF14451 Ub-Mut7C: Mut7-C ubiq 20.2 3E+02 0.0065 24.8 5.9 53 28-89 22-75 (81)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=372.07 Aligned_cols=596 Identities=20% Similarity=0.179 Sum_probs=375.2
Q ss_pred EEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCCCCC-C-
Q 004798 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-G- 99 (730)
Q Consensus 22 tVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp~ss-~- 99 (730)
..+++....+...+.+..++..+|.+|..++|||...++|+|-|..++++..+..|+.+...+.+..++.+...... +
T Consensus 328 l~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~t 407 (1143)
T KOG4248|consen 328 LRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVET 407 (1143)
T ss_pred hhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCCC
Confidence 34555556677677777888888999999999999999999999999999999999999999999987766544321 1
Q ss_pred CCCCC----CCCCCc-----ccccccCCchhcccccccCCCCCcchhHHHHHhhhccCCCCCC---CCCCCc-ccccc--
Q 004798 100 THNLP----GTSRSH-----GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIG---SGGGGI-DLREH-- 164 (730)
Q Consensus 100 ~sI~v----~tGrti-----tl~V~pSdTI~~VK~~Iq~EGIPpdqQRLIfavl~S~G~~~~~---~G~~~~-~~~~~-- 164 (730)
.+-++ ..+..+ ...+.......-++...+-+++-.++-...-++...+|..++. ++..+. +..+.
T Consensus 408 p~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pthq 487 (1143)
T KOG4248|consen 408 PAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTHQ 487 (1143)
T ss_pred cccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcce
Confidence 11111 111111 2222222222222221122233333333344444444443332 121222 11111
Q ss_pred -----ccCCCCccCCCCCcccccCCCCCCCCcccccCCCCccccCCCcCCCCCCCCCcCCCchhhHHHHHHHHH------
Q 004798 165 -----AMQRPERTSDAGSALDSAHQQPEQGGTRFQSNRPHSAFGIPTAISLGTLQPPVIPDSLTTLSQYLSQLR------ 233 (730)
Q Consensus 165 -----~~~~~~~ts~~~g~~~~~~~q~~q~G~~~~~~~~~~~~~~P~~~~~~~~~~~vIPDSLtTLsqyl~rm~------ 233 (730)
...+.++.+... ...++++.+.+...+. .+. +..-|||+..|+..|+...+
T Consensus 488 ~~~~pd~P~i~p~ssg~-----e~~s~~q~~~glstd~---S~~----------q~~s~~dt~~~t~Pv~~lr~~vp~~l 549 (1143)
T KOG4248|consen 488 VIARPDGPGIGPFSSGG-----EPNSPTQQGAGLSTDH---SLA----------QMVSGPDTQLTTIPVLVLRGCVPGML 549 (1143)
T ss_pred eecCCCCCCCCCCCCCC-----CCcChhhhcccccccc---chh----------hhccCCCccceeeccchhhccchhhc
Confidence 112222111100 1112222111111111 112 22233444444333333333
Q ss_pred -----HhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004798 234 -----HEFDGIGRGGGNNTAATNSTIEGNTNSASHPGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLENQAN 308 (730)
Q Consensus 234 -----~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~lp~p~~L~~v~~~t~qll~~~a~~~Ls~la~qL~~~~~ 308 (730)
+++.++ ..+++. . ++.+.. .....+.++.|++|++|+.+|+|||+|..+.|||+|+++|++.++
T Consensus 550 ~~~~~qv~~a~-d~~nq~--~---~n~q~p-----~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vs 618 (1143)
T KOG4248|consen 550 PPPGPQVASAL-DTGNQA--D---TNGQAP-----GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVS 618 (1143)
T ss_pred CCcchhHHHhh-hccccc--c---ccccCC-----CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcc
Confidence 444433 112111 1 111222 245567899999999999999999999999999999999999999
Q ss_pred CCChhhhhhhh--hHHHHHhHHHHHHHHHHHhhccceeEeecCCCCcccccccCCeeEeCCCCCCccccCCCCCCCCCcc
Q 004798 309 VTDPSLRTSIQ--TTAWSAGLLLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLMVQPLPFQPGTSF 386 (730)
Q Consensus 309 ~tD~~~R~~iQ--~~a~~~G~~~q~Lga~LlelGRttmtLrmg~tp~ea~vn~GpAvfIspsGpNpimVqp~p~q~~~~f 386 (730)
|+||..|+++| ++.++.|.+|+|||+.||||||||+|++||+| .+|+|+||||||+|+||+|++|||.+--.+|
T Consensus 619 vSdPsaral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~ 694 (1143)
T KOG4248|consen 619 VSDPSARALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELF 694 (1143)
T ss_pred cCCCcchhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhh
Confidence 99999999999 99999999999999999999999999999999 8999999999999999999999999887777
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCceee-----------eEeecCccccCCCCccccccccCCCCCCCCCcccCCCCCCC
Q 004798 387 GAIPMGSVQPGSGLVNGRSAGFLPRRID-----------IQIRRGSSMVGSNAIQEERSNTQQAPGQGNTATASGTDNLG 455 (730)
Q Consensus 387 g~~~~gs~~~~~~~~~~~g~~~~pr~~~-----------i~i~~g~s~~~~~~~~~e~~~~q~~~~~~~~~~~s~~~~~~ 455 (730)
-.|=.+... -|....|...++|.++ |.+..|.+..++++++.+..++.+....++++....
T Consensus 695 Tsi~s~~~~---~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~p~~----- 766 (1143)
T KOG4248|consen 695 TSIRSGNHI---VLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSMPDV----- 766 (1143)
T ss_pred ccccccccc---ccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCCCCc-----
Confidence 665333211 1333344444455555 555555556666666666665554444444422111
Q ss_pred CCccccCCCCCCCCCCCCceeeeeeeeeeecccCCCCCCCCC-CCCCceeeeeccceeeeeeccccCCCCCCCCCCCCCC
Q 004798 456 SQATTRNSDGSSSAGESGVRVVPVRTMVAPVPAPFGRLPSDS-SSNPVSLYYPVLGRFQHVASGLVSGEQGHQVSGEHHP 534 (730)
Q Consensus 456 ~~~~~~~~~~~~~~~~~g~r~~p~rtvvaa~p~~~~r~ps~s-s~~~~g~~~p~~~r~q~~~~~~~~~~~~~q~~~e~~~ 534 (730)
| -+|.+.-+..+|| ....|-.++|...+++|+-.--. ++ ..
T Consensus 767 -------------------------t---~l~t~~~~~~~ds~lq~qm~~~~~dv~n~g~~Q~p~~---------ia-~~ 808 (1143)
T KOG4248|consen 767 -------------------------T---NLPTGHPQPLQDSTLQPQLRSFFPDVYNGGHVQIPTP---------IA-IR 808 (1143)
T ss_pred -------------------------c---cccCCCCCCCCchhhhhhhhhhchhhhccccccccch---------hh-hh
Confidence 1 2344555677777 77888999999999985422111 11 11
Q ss_pred CCCccCCCCCCCccccc-cCCCCCCCCCCCCCCccccccCCCceeeeecccCCCCCCChhhhhhhhhhHHHHHHhhCCCC
Q 004798 535 AGLQTEQPSVPDSIGQQ-NAEDPARNGSLANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQLLRNLFPGG 613 (730)
Q Consensus 535 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~in~~~~~g~~~~~~~~~~~~~~~~q~lr~~~~~~ 613 (730)
.++....+.+.|....+ ..-...|..+.. ..+| .+-++++.++|.|+++.|-|.+
T Consensus 809 ~a~~~~~~~l~~l~~e~~s~~a~~~~~ds~--------------------~~pg----~~l~sEr~N~i~q~vkpltps~ 864 (1143)
T KOG4248|consen 809 MALDTLGTGLEELVRESFSLVAVQRGVDSI--------------------IRPG----LRLLSERFNSIAQHVKPLTPSG 864 (1143)
T ss_pred hhhhhhccchhhhccccccccCcccCcCcc--------------------cccc----cchHHHHhhhhhhccccCCccc
Confidence 12334455666666333 333333332211 2233 6778889999999999998885
Q ss_pred ceeecCCCcccccCCCCccccccccccccccCCCccccccc------CcchhHHHH--HHHhhhhccccCCCCCCCCCCC
Q 004798 614 EIHVENGGLHGTASDSVPEHAATFRDRVVSSTGSSAAEASA------TDEGIFLSN--LLHQIMPFISQHSSAEPTVTPL 685 (730)
Q Consensus 614 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~eg~~~s~--~l~~imp~isq~~~~~~~~~~~ 685 (730)
....|....+.+..... +.++...+.+.+|-++.- +-||.|.|. ++.+||+||.|+++..-.+
T Consensus 865 -~aag~~e~~nq~~pe~~-----a~t~l~lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~va~si~a--- 935 (1143)
T KOG4248|consen 865 -FAAGLLELCNQALPECL-----ALTLLCLGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVVAESIPA--- 935 (1143)
T ss_pred -cchhhHHHHhccchhhH-----HHHHHhhcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhhhccCcc---
Confidence 55566666676765443 577888888888766644 339999887 9999999999999877663
Q ss_pred CCCcccccccCCCCCCCC---CCCCcc-------cccccCCCCCCCCCcccccCC
Q 004798 686 EDTNAFEHRMSQDSSTHA---GSSSVR-------TSRRQSDSEPSAPNPKRQKME 730 (730)
Q Consensus 686 ~~~~~~~~~~~~~ss~~~---~~s~~~-------~s~~~~~~~~~~pnskrqk~e 730 (730)
+-..--.++...+.|.++ |++.+. .++++ .+.++++.+|+|+||
T Consensus 936 ~t~t~~~sn~rv~~s~q~~~e~~t~v~~~~~a~p~sq~~-~~sp~~~tsm~Q~te 989 (1143)
T KOG4248|consen 936 GTDTGLGSNRRVGDSPQALPEEPTEVQGAERASPESQRE-NASPAPGTSMEQATE 989 (1143)
T ss_pred cchhhccccccccccccccccccchhccccccCcccccc-cCCCCCcccHHHHhh
Confidence 223334555566666653 567776 66666 889999999999986
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.70 E-value=3.2e-17 Score=138.73 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=71.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.69 E-value=6.9e-17 Score=136.85 Aligned_cols=73 Identities=30% Similarity=0.357 Sum_probs=70.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||+. ++++++|++++||++||++|++++|+|+++|||+|+||.|+|+++|++|+|++++||||++++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999984 78999999999999999999999999999999999999999999999999999999999999876
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.68 E-value=1.2e-16 Score=134.88 Aligned_cols=75 Identities=33% Similarity=0.469 Sum_probs=73.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999765
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.66 E-value=4.1e-16 Score=130.40 Aligned_cols=75 Identities=32% Similarity=0.533 Sum_probs=72.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998765
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.65 E-value=4.3e-16 Score=141.47 Aligned_cols=79 Identities=30% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++++++
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.65 E-value=3.9e-16 Score=130.51 Aligned_cols=75 Identities=37% Similarity=0.564 Sum_probs=73.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+++|++|+|++|++|||++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999765
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.64 E-value=4e-16 Score=134.85 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=70.8
Q ss_pred EEEEEEecCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtL~GKt-~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
|+|+||+++|++ +.++ +++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999999864
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.64 E-value=4.5e-16 Score=133.30 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+|+|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.|+.|+|+++|++|||++|++|||+.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=4.4e-16 Score=131.94 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=70.9
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999765
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=8.3e-16 Score=129.77 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=71.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGI--PpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++ ++++|||+|+|+.|+|+.+|++|+|++|++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999875
No 12
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.62 E-value=1.4e-15 Score=130.90 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=72.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.|+|+||+..|+.+.++|+++.||.+||++|+++.++++++|||+|+||.|+|+ +|++|||++|++|||+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 489999999999999999999999999999999999999999999999999999 9999999999999999987653
No 13
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=1.6e-15 Score=125.65 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|++|||+++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.61 E-value=1.3e-15 Score=127.54 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.1
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+||.|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 15
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=2.7e-15 Score=129.26 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=72.2
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL--IFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.|+|+||+++|+++.++|++++||.+||++|++++++++++||| +|+|+.|+|+++|++|||++|++|+|++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999999999854
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=2.4e-15 Score=127.54 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.0
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
++||.++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=5.9e-15 Score=123.99 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|+|+||+..|+ +.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|||+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999975
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.54 E-value=1.4e-14 Score=126.61 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=64.8
Q ss_pred cEEEEEEecCCcEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCChhhhcccc--ccCCCEEEEee
Q 004798 18 TIEIKIKTLDSQTYT--LRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (730)
Q Consensus 18 tMqItVKtL~GKt~t--LeVdpsdTV~dLKekIaektG--IPpeqQRLIFkGKvLkDdkTLsdYG--IqdGSTLhLVl 89 (730)
.|.|+||+++++++. +++++++||.+||++|++..+ .++++|||||+||+|+|+.+|++|. +.+++|||||.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 378999999999955 555899999999999999874 4579999999999999999999996 99999999986
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=1.6e-14 Score=119.43 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=66.0
Q ss_pred EecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 24 KtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
|+++|++|.++|++++||.+||++|++++++|+++|+|+|+|++|+|+.+|.+|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.49 E-value=4.7e-14 Score=119.33 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEec-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCh-hhhccccccCCCEEEEe
Q 004798 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 21 ItVKtL-~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLV 88 (730)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999998 68999999999999983
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.49 E-value=6.4e-14 Score=116.20 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
|+|+||+. |+.+.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 89999999999999999999999999999999999999999999999999999999999974
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=8.1e-14 Score=119.06 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 26 L~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
++|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+++|++|+|+++++|||+++.+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999998764
No 23
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=9.2e-14 Score=151.08 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=73.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektG---IPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+++|++|.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999988764
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.47 E-value=3.3e-13 Score=118.47 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
..+....|+|+|++.+|+++.++|.+++++..||++++++.|+++++|||+|+|+.|+|+.|+++|+|+++++|++++++
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004798 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 85 ~GG 87 (87)
T cd01763 85 TGG 87 (87)
T ss_pred ccC
Confidence 763
No 25
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.46 E-value=1.6e-13 Score=117.64 Aligned_cols=69 Identities=30% Similarity=0.465 Sum_probs=66.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCChhhhccccccCCCEEEEe
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF---kGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
|.|.||+ .|++|.++|++++||.+||++|++++++|+++|||+| +||.|+|+.+|++|+|++|++|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 5789998 7899999999999999999999999999999999996 8999999999999999999999997
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6e-14 Score=116.90 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEe
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
|.|+||++.||.+.+++++.++|+.+|++|+++.||||.+|||+|.||.+.||++-++|++.-|++|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 27
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=150.93 Aligned_cols=79 Identities=35% Similarity=0.579 Sum_probs=74.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp~ 96 (730)
..|+|+||+.+. ++.|.|..+.||.+||++|...+++++++++|||+||+|||++||..|||+||+|||||+|....+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 569999999987 8999999999999999999999999999999999999999999999999999999999999765443
No 28
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.9e-14 Score=131.78 Aligned_cols=76 Identities=36% Similarity=0.544 Sum_probs=74.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+++++.||+++++|++++||..||.+|..++|+|+++|+|+|+||.|+|..||++|+|+..+|||+++++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999886
No 29
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8.4e-14 Score=134.41 Aligned_cols=78 Identities=36% Similarity=0.543 Sum_probs=75.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp~ 96 (730)
|+|+|+++.++++.++|+.++||..+|.+|+++++||+++|||||.|+.|+|+++|+||+|+..+||||++++.++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999988643
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=1.6e-12 Score=104.40 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGS 83 (730)
|+|+||+.+ +.+.++|++++||.+||++|+.++++++++|+|+|+|+.|+|+++|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999999999999999999999999999999875
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.24 E-value=1.9e-11 Score=105.48 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=60.9
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-Chhhhcccccc-CCCEEEEee
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLk-DdkTLsdYGIq-dGSTLhLVl 89 (730)
|.=|...++++.++|++++||.+||++|++++|+|+++||| |.|+.|. |+++|++|+|+ +|+++||.+
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 33345568999999999999999999999999999999999 9999885 66999999999 889999975
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.22 E-value=9.4e-12 Score=108.10 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=51.0
Q ss_pred Eec-CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 34 RVD-KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 34 eVd-psdTV~dLKekIaekt--GIP-peqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+|. .++||.+||++|++++ +++ +++|||||+||.|+|+++|++|+|++|++|||+.+
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 344 4789999999999996 475 89999999999999999999999999999999864
No 33
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.18 E-value=2.9e-11 Score=128.52 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektG--IPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||++++.+|+++|.+++||.++|++|+...| +|.++|+|||+||+|+|+.+|.+|+|+++..|.|++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 79999999999999999999999999999999998 9999999999999999999999999999999999998876
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.18 E-value=6.6e-11 Score=96.08 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.5
Q ss_pred EEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 22 tVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+||..+|+.+.+++++++||.+||++|++.+++++++|+|+|+|+.|+|+.+|.+|+|.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36777899999999999999999999999999999999999999999999999999999999999875
No 35
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.17 E-value=3.6e-11 Score=111.47 Aligned_cols=79 Identities=28% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCcEEEEEEecCCcEEE-EEecCCCCHHHHHHHHHHHh-----CCC--CCCeEEEeCCeecCChhhhcccc------ccC
Q 004798 16 ETTIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVT-----GVL--SEQQRLICRGKVLKDDQLLSAYH------VED 81 (730)
Q Consensus 16 ~stMqItVKtL~GKt~t-LeVdpsdTV~dLKekIaekt-----GIP--peqQRLIFkGKvLkDdkTLsdYG------Iqd 81 (730)
++.++|+++..+|..+- +.+.+++||.+||++|++.+ ++| +++|||||.||+|+|++||++|+ +..
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 35689999999997654 78899999999999999555 444 99999999999999999999999 777
Q ss_pred CCEEEEeeecCCC
Q 004798 82 GHTLHMVVRQPVP 94 (730)
Q Consensus 82 GSTLhLVlRlpgg 94 (730)
..|+||++|.+..
T Consensus 82 ~~TmHvvlr~~~~ 94 (113)
T cd01814 82 VITMHVVVQPPLA 94 (113)
T ss_pred ceEEEEEecCCCC
Confidence 8999999997653
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.10 E-value=3.2e-10 Score=94.88 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
|+|+|++.+|+.+.+.|.+++++..|+++++++.+++. +.++|+|+|+.|.+++|+++|+|++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999975
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.91 E-value=2.2e-09 Score=97.96 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=59.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCh-hhhccccccCCCEEEEeeecCC
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlRlpg 93 (730)
+...++|++++||.+||.+|..+++++|++|+|+|.|+.|.|+ +||++|||..+++|+|+++.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 3457889999999999999999999999999999999999765 8999999999999999987554
No 38
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.4e-09 Score=126.18 Aligned_cols=73 Identities=40% Similarity=0.684 Sum_probs=70.2
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 20 qItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.|+||++|.++.+|.|...+||++||+.|.++.+|+.+.|||||.|++|.|+|++.+|+| ||.+|||+-|.+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 499999999999999999999999999999999999999999999999999999999999 9999999999554
No 39
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=81.01 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.7
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+++++..|+.+.+++....+|..+|.+|+.+.+++.++|+|.|.|+.|.|+.+|.+|+|..+.+++|..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999999999999999999999999999999999999999999999999999999999998765
No 40
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.85 E-value=1.3e-08 Score=89.42 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=59.8
Q ss_pred EEEEEEecC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCe-----ec-CChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~-GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-FkGK-----vL-kDdkTLsdYGIqdGSTLhLVlR 90 (730)
+.|+|+... ......++.+.+||.+||++++..+|+++..|||. |.|+ .| +|+++|.+|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 566776643 33455669999999999999999999999999995 7887 45 6779999999999999999853
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.67 E-value=6.4e-08 Score=84.74 Aligned_cols=72 Identities=28% Similarity=0.495 Sum_probs=59.0
Q ss_pred EEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C---e---ec-CChhhhccccccCCCEEEEe
Q 004798 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G---K---VL-KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtL~G--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk-G---K---vL-kDdkTLsdYGIqdGSTLhLV 88 (730)
++|+|..... +.+..++++++||.+||.+|+..+|++++.|+|.+. . . .| +|+++|.+|++++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6788877655 488899999999999999999999999999999876 2 1 24 46799999999999999997
Q ss_pred ee
Q 004798 89 VR 90 (730)
Q Consensus 89 lR 90 (730)
=.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 43
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.64 E-value=5.4e-08 Score=104.01 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=61.8
Q ss_pred EEEEEEecCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCChhhhccccccCCCEEEE
Q 004798 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 19 MqItVKtL~GKt~---tLeVdpsdTV~dLKekIaektGI-PpeqQRLIFk---G----KvLkDdkTLsdYGIqdGSTLhL 87 (730)
|+|+|+..+||.+ +++|+++.||++||++|+++.++ ++++|||++. | +.|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998888887 79999999999999999999986 8999999983 3 4889999999999999998765
No 43
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.60 E-value=2.2e-07 Score=86.24 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=59.3
Q ss_pred cEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCChhhhccccccCCC------
Q 004798 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (730)
Q Consensus 18 tMqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektG-------IPpeqQRLIFkGKvLkDdkTLsdYGIqdGS------ 83 (730)
.+.|+++..+|+ ...+.+++++||.+||+.|...+. ..+..+||||.||+|+|+++|++|.+..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 578889999999 777999999999999999998762 233678999999999999999999987665
Q ss_pred EEEEeeecCC
Q 004798 84 TLHMVVRQPV 93 (730)
Q Consensus 84 TLhLVlRlpg 93 (730)
++||+++...
T Consensus 82 vmHlvvrp~~ 91 (111)
T PF13881_consen 82 VMHLVVRPNA 91 (111)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEecCCC
Confidence 7899998654
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.46 E-value=3.5e-07 Score=78.64 Aligned_cols=68 Identities=31% Similarity=0.359 Sum_probs=54.4
Q ss_pred EEEEEecCCcEE-EEEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCChhhhccccccCCCEEEE
Q 004798 20 EIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 20 qItVKtL~GKt~-tLeVd-psdTV~dLKekIaektG-IPpeqQRLI--FkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
+|.++....+.+ .++++ ++.||.+||+.|++..+ +++++|||. +.|+.|+|+.+|.+|||++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 456665441333 24444 88999999999999986 578999885 8899999999999999999999876
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.43 E-value=7.2e-07 Score=83.38 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=61.3
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccc-------cCCCEEEEeeecC
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQP 92 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGI-------qdGSTLhLVlRlp 92 (730)
|.||- ...+|.++++++.||.+||++|+.....||++|||+..+.+|+|++||+|||+ +...+|-|.+|..
T Consensus 5 lmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 5 LMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred EEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence 34444 33567789999999999999999999999999999966789999999999999 6788999998863
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.34 E-value=1.9e-06 Score=64.53 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.1
Q ss_pred EEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 23 VKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
|+..+++...+.+.+..||.+||++|.++++++++.++|+++|+.+++...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788889999999999999999999999999999999999999999888999999999999874
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.28 E-value=2.7e-06 Score=74.44 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=64.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecCChhhhccccccCCCEEEEeeec
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG-----KvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
++|+||......+++.|+|..+|.+||++|....+++- .|||.|.. ..|.+.++|++|||..+..|.|+...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999885 99999973 36789999999999998888887643
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.99 E-value=1.3e-05 Score=70.56 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=44.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CChhhhccccccCCCEEEEe
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG---KvL--kDdkTLsdYGIqdGSTLhLV 88 (730)
..|-|.|++.+| .+.|+|++++|+.+||++|++.++++.+.|.|..+- +.| .++++|+++||+.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 458899999764 567899999999999999999999999999886442 245 46799999999999999874
No 49
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00026 Score=65.00 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|.|+|+..++....+.|..+.+...|++..+++.|+.....|++|+|+.+++.+|=++++.++++.|.++..+.++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 5678888888788888999999999999999999999999999999999999999999999999999999999887654
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.4e-05 Score=85.32 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=68.0
Q ss_pred cEEEEEEecCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 18 TIEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtL~GKt~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...|.||+ .|+.|.++ ++.++|+..||.+++..+|++|++||++++|+.|+|+-.+...+|+++.+|+|+-...
T Consensus 3 ~~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 3 SDTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred cceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 35688998 58999987 9999999999999999999999999999999999999999999999999999986543
No 51
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.4e-05 Score=68.29 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=63.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+++.+...-||+..+.+.+++||.+||+.|+.++|..++..+|-.-..+++|.-+|++|.|++|..+.|+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 56777777799999999999999999999999999999998887667788999999999999999888763
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=4.8e-05 Score=81.59 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=61.6
Q ss_pred EEEEEEec---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL---~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
|.|.|... ....+.|+|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+..-+.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 45666653 124578899999999999999999999999999999999999999999999998888888884
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=6.1e-05 Score=73.80 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=42.2
Q ss_pred CCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhhhcc
Q 004798 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (730)
Q Consensus 100 ~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl~S~ 147 (730)
|.||+ .+++++.+.|++++||.++|++|| +||||+|||||||+.-.--
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe 51 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc
Confidence 34666 678899999999999999999999 9999999999999876633
No 54
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=5.2e-05 Score=70.60 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=36.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHh
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfav 143 (730)
.+|++++++|+++++|.++|++|+ ++|||+++|+|+|+-
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~ 47 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcc
Confidence 679999999999999999999999 999999999999863
No 55
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=97.18 E-value=4.1e-05 Score=70.10 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=53.7
Q ss_pred cccccCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 76 dYGIqdGSTLhLVlRlpggp~ss~~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
-|.+.+-.++|++++... .|++++ ..|+.+.++|.+++||.+||.+|+ ++|||+++|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYD-----TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred ccccCCcceeEEeeccCC-----CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 356777889999999755 577766 678889999999999999999999 89999999999975
No 56
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.18 E-value=0.00088 Score=58.11 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=52.0
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-eCCeecCChhhhccccccCCCEEEE
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---E---QQRLI-CRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp---e---qQRLI-FkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
.++|+|...+++.+.+.+..+.+|.+|...|.+..+.+. . ..+|. -+|..|+++++|++|||.+|+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 467888886678999999999999999999999887643 2 24566 6789999999999999999999987
No 57
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.86 E-value=0.0023 Score=58.91 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=51.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCChhhhcccccc
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQLLSAYHVE 80 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG--KvLkDdkTLsdYGIq 80 (730)
|-|.||- +..+|.++.+++.||-+||.+++....-|++.|||+.-. .+|+|.++|+|||..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455555 346678899999999999999999999999999998743 678999999999764
No 58
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00028 Score=59.84 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004798 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 104 v~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl 144 (730)
+.+++.+.+.++|+|.|+.+|..+. ++||||.+|||||+--
T Consensus 7 tLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gk 48 (70)
T KOG0005|consen 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGK 48 (70)
T ss_pred eeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccc
Confidence 4789999999999999999999999 9999999999999743
No 59
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.73 E-value=0.012 Score=50.78 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCCh--hhhccccccCCCEEEEe
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLI--FkGKvLkDd--kTLsdYGIqdGSTLhLV 88 (730)
....+.|.||..+|+.+...+.+++||.+|..-|..+...+... ..|+ |--+.|.++ ++|.++|+....+|+|-
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 34568999999999999999999999999999999888777664 6776 566777543 69999999999999873
No 60
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00053 Score=74.28 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=62.2
Q ss_pred CCCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCChhhhcccccc--CCCEEEE
Q 004798 14 SSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVE--DGHTLHM 87 (730)
Q Consensus 14 ~s~stMqItVKtL~G--Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIFkGKvLkDdkTLsdYGIq--dGSTLhL 87 (730)
..+..+.+.||..+. |.+.|..+..+||.+||..++..+--.+ .+|||+|.||.|.|+..|.|+=+| +.+++||
T Consensus 5 ~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hl 84 (391)
T KOG4583|consen 5 IFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHL 84 (391)
T ss_pred cCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence 344557788888765 4466777889999999999999875433 689999999999999999887553 4578888
Q ss_pred eeecCC
Q 004798 88 VVRQPV 93 (730)
Q Consensus 88 VlRlpg 93 (730)
++..+.
T Consensus 85 vcnsk~ 90 (391)
T KOG4583|consen 85 VCNSKE 90 (391)
T ss_pred hcCCCC
Confidence 877554
No 61
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.40 E-value=0.0068 Score=55.50 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=44.3
Q ss_pred EEEEecC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCChhhhccc
Q 004798 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (730)
Q Consensus 21 ItVKtL~-GKt~tLeVd--psdTV~dLKekIaektG--IPpeqQRLIFkGKvLkDdkTLsdY 77 (730)
|+|++.+ -..+.|+|. .+.||..||++|.++.. ..-.++||||+||.|.|+..|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 5666655 244667777 78999999999999983 333678999999999998777654
No 62
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.34 E-value=0.00019 Score=61.14 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 102 NLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 102 I~v~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+++.+.+++.++|++++||++||.+|+ ++|+|+++|+|+|+
T Consensus 3 i~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 3 LFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred EEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 334334667899999999999999999 99999999999975
No 63
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.21 E-value=0.019 Score=50.81 Aligned_cols=70 Identities=21% Similarity=0.449 Sum_probs=57.6
Q ss_pred cEEEEE--EecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCChhhhccccccCCCEEEE
Q 004798 18 TIEIKI--KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItV--KtL~GKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
.|+|+| +.-+|++|.|++....+|..|-..+.+...+.. ...|..-++++|.+++.|.+|+|.+|+.|.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 455555 445699999999999999999988877765432 4468889999999999999999999999876
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.12 E-value=0.036 Score=48.08 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---hhhhccccccCCCEEEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLkD---dkTLsdYGIqdGSTLhL 87 (730)
...+|.||..+|+.+...+..++||.+|.+-|....+......+|+ |--|.|.+ +++|.++|+....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4578999999999999999999999999999976666666667776 55677754 47999999988887765
No 65
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.76 E-value=0.067 Score=46.00 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=53.9
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---hhhhccccccCCCEEEE
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLkD---dkTLsdYGIqdGSTLhL 87 (730)
..+|.||..+|+.+......++||.+|.+-|.....- .....|+ |-.|.|.| +++|.+.|+.+ +++.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 4679999999999999999999999999999876543 4556666 55677854 68999999994 44444
No 66
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.73 E-value=0.042 Score=54.82 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=59.9
Q ss_pred EEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC-Ceec--CChhhhccccccCC----CEEE
Q 004798 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR-GKVL--KDDQLLSAYHVEDG----HTLH 86 (730)
Q Consensus 19 MqItVKtL~G----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLIFk-GKvL--kDdkTLsdYGIqdG----STLh 86 (730)
|+|+|++++| .++.+.+..+.||.+|+..|...++++...| .|.+. ++.| .++..+..+.-.+. .+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999998874 45553 4454 56667777654433 4788
Q ss_pred EeeecCCC
Q 004798 87 MVVRQPVP 94 (730)
Q Consensus 87 LVlRlpgg 94 (730)
|++++.++
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888775
No 67
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.59 E-value=0.00089 Score=57.20 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+++.++|++++||.++|.+|+ .+|+|+++|+|+|+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 568889999999999999999999 89999999999874
No 68
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.024 Score=51.87 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=68.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
..|.++|...++.++.+.|..+.+...|.+..+...|-..+..|++|+|+.++-++|-.|++.++++.|..+..+-+
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG 99 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG 99 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence 35667777778899999999999999999999999999999999999999999999999999999998887766544
No 69
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.48 E-value=0.04 Score=47.29 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=46.9
Q ss_pred ecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEE
Q 004798 25 TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 25 tL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
..+++.+.+.|.++.++.++-++..+++++.+++-.|.|++|.|+-+.++.-.|+.+|++|.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 347889999999999999999999999999999999999999999999999999999999875
No 70
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.31 E-value=0.11 Score=45.68 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=54.8
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecCC-hhhhccccccCCCEE
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIP-peqQRLI--FkGKvLkD-dkTLsdYGIqdGSTL 85 (730)
..+|.||..+|+.+...+..++||.+|++-|....+-. .....|. |-.|.|.| ++||.|.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 57899999999999999999999999999999876432 2455665 77888854 689999999865443
No 71
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.031 Score=57.80 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCC--EEEEeeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH--TLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGS--TLhLVlRl 91 (730)
.++.+.+.+...+|+.++|.++..+.++.+..|+++|.|++|.|...|..|+|+.|. .|.+++..
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEecc
Confidence 467788889999999999999999999999999999999999999999999999994 44444433
No 72
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.22 E-value=0.12 Score=45.24 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=56.7
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---hhhhccccccCCCEEEE
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLkD---dkTLsdYGIqdGSTLhL 87 (730)
..+|.||..+|+.+.-....++||.+|++-|....+.. ....|+ |--|.+.+ +++|.+.|+....+|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46899999999999999999999999999998765432 456666 56788853 48999999998888876
No 73
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=95.11 E-value=0.0013 Score=56.02 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+...++|.+++||++||.+|+ ++|+|+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 467788899999999999999999 89999999999865
No 74
>PTZ00044 ubiquitin; Provisional
Probab=94.91 E-value=0.0014 Score=55.41 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+++.+.|.+++||++||.+|+ ..|+|+++|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 567888899999999999999999 89999999999974
No 75
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.76 E-value=0.051 Score=57.55 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=51.5
Q ss_pred EEEEEEecCC-cEEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEE----EeCCeecCChhhhccccccCCCEEEE
Q 004798 19 IEIKIKTLDS-QTYT-LRVDKQVPVPALKEQIASV-TGVLSEQQRL----ICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 19 MqItVKtL~G-Kt~t-LeVdpsdTV~dLKekIaek-tGIPpeqQRL----IFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
|+|+++...+ -.++ .+.+...||.|++++|..+ ..+.+.++|+ .-+||.|.|+.+|++|+..++++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 6788877654 2344 5677889999999777655 4677755443 35699999999999999999977654
No 76
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.58 E-value=0.24 Score=44.31 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC--------ChhhhccccccCCCEEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK--------DDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk--GKvLk--------DdkTLsdYGIqdGSTLh 86 (730)
..++|.||..+|+.+.-....++||++|..-|.. .+..++...|+++ -|.|. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4689999999999999999999999999999964 4556678888865 37775 35799999999888776
Q ss_pred E
Q 004798 87 M 87 (730)
Q Consensus 87 L 87 (730)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 77
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.49 E-value=0.0032 Score=53.61 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.|+++.+.|.+++||.+||.+|+ .+|+|+++|+|+|+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 57778899999999999999999 89999999999974
No 78
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.13 E-value=0.0036 Score=53.31 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+++.++|++++||.+||.+|+ ..|+|+++|+|+|+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 567888899999999999999999 89999999999964
No 79
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.12 Score=53.59 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=56.5
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC--e---ec-CChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-FkG--K---vL-kDdkTLsdYGIqdGSTLhLVlR 90 (730)
++|+|.+..-+ .+..+..+++||.+||.+++.++|.+++.++|. |+| | .| .++..|..|+..+|..||++=.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56666654322 233467789999999999999999999999985 555 2 45 4568999999999999999854
Q ss_pred c
Q 004798 91 Q 91 (730)
Q Consensus 91 l 91 (730)
-
T Consensus 82 ~ 82 (234)
T KOG3206|consen 82 N 82 (234)
T ss_pred C
Confidence 3
No 80
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.81 E-value=0.47 Score=42.63 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---ChhhhccccccCCCEEEEee
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLk---DdkTLsdYGIqdGSTLhLVl 89 (730)
+...-+|.||..+|+.+.-....++++.+|-.-|.. .+.+++...|+ |--|+|. .+.||.+.|+....+|.|--
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 345678999999999999999999999999999988 57788889887 5567773 34899999999999988743
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.79 E-value=0.47 Score=41.98 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---ChhhhccccccCCCEEEEe
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLk---DdkTLsdYGIqdGSTLhLV 88 (730)
+...+|.||..+|+.+.-....++++.+|..-|..+ +.+++..+|+ |--|.+. .+.+|.+.|+....+|.|-
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 456899999999999999999999999999999865 7777788887 5577774 2479999999988888763
No 82
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=93.35 E-value=0.0055 Score=51.48 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+...++|++++||+.||.+|+ ++|+|+++|+|+|+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 467788899999999999999999 89999999999865
No 83
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=93.34 E-value=0.006 Score=53.22 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=32.4
Q ss_pred CCCCC-ccc-ccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRS-HGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrt-itl-~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+. +.+ .+.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 45664 467 4899999999999999 89999999999984
No 84
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=93.14 E-value=0.0077 Score=52.09 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||++||.+|+ +.|+++++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 456777789999999999999998 77999999999986
No 85
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=92.97 E-value=0.011 Score=51.47 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
..+.+..+.|.+++||+.||.+++ ++|||+++||| |
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~ 46 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V 46 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E
Confidence 456777899999999999999999 99999999999 5
No 86
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=92.28 E-value=0.011 Score=50.84 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.++|++++||.+||.+|+ ..|||++.|+|+|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 357788899999999999999999 89999999999975
No 87
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=91.67 E-value=0.013 Score=49.13 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.++.||..||.+++ +.|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 456777789999999999999999 88999999999975
No 88
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=91.51 E-value=0.012 Score=51.05 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+...++|.++.||++||.+|+ +.|+++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456777899999999999999998 78999999999976
No 89
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=90.99 E-value=0.014 Score=48.89 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.++|.+++||+.+|.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 457778899999999999999999 89999999999873
No 90
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=90.51 E-value=0.024 Score=48.96 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
.++.+.++|.+++||++||..|+ ..|+|+++|+|+|
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 46677789999999999999999 8999999999997
No 91
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=90.00 E-value=0.022 Score=48.24 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCC--CcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGI--PpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||..|+ .+|+ ++++|+|+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 456778899999999999999999 8899 9999999974
No 92
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.88 E-value=1.5 Score=37.34 Aligned_cols=68 Identities=28% Similarity=0.276 Sum_probs=52.0
Q ss_pred EEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEe----CC--eecCChhhhcccccc--CCCEEEEeee
Q 004798 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (730)
Q Consensus 23 VKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF----kG--KvLkDdkTLsdYGIq--dGSTLhLVlR 90 (730)
|+.+||...+++|+++.|+.+|=++|+++.++.- +-.=|.| +| .-|+.+++|.++... ...+|++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 6788999999999999999999999999999865 3446777 22 357888999999777 3345555443
No 93
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=89.15 E-value=2.3 Score=37.94 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=51.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCChhhhcc----ccccCCCEEEEe
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSA----YHVEDGHTLHMV 88 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIFkGK-----vLkDdkTLsd----YGIqdGSTLhLV 88 (730)
|+|++.. ++..+.+.+.++.+..+|+++|.+++++.. ....|.|... .|..+.-|.+ |......+|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4666666 678899999999999999999999999865 5677878652 3444444544 445556777776
Q ss_pred ee
Q 004798 89 VR 90 (730)
Q Consensus 89 lR 90 (730)
+.
T Consensus 80 v~ 81 (82)
T cd06407 80 VH 81 (82)
T ss_pred ee
Confidence 64
No 94
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=88.74 E-value=0.04 Score=47.82 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=31.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI 139 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRL 139 (730)
..|+.+.+.|+++.||.+||.+|+ +.|+|+++|||
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL 45 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRL 45 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 457778889999999999999998 88999999999
No 95
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=88.69 E-value=0.68 Score=40.65 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.0
Q ss_pred ecCCCCHHHHHHHHHHHhCC-CCCCeEEEeCCeecCChhhhccc-cccCCCEEEEeee
Q 004798 35 VDKQVPVPALKEQIASVTGV-LSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (730)
Q Consensus 35 VdpsdTV~dLKekIaektGI-PpeqQRLIFkGKvLkDdkTLsdY-GIqdGSTLhLVlR 90 (730)
|.++++|.+||+.+...... .-....|.++|+.|+|...|+++ +++++++|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 56889999999999877542 22456888999999999999988 6899999999854
No 96
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.28 E-value=2.6 Score=35.76 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=43.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGI----PpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...++++...||.+|++++..++.- ......+..+|+..+ .++-|++|+.|.++-...
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCC
Confidence 4567777789999999999988642 234556778888876 456799999999986543
No 97
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=88.19 E-value=0.031 Score=46.31 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+...+.+.++++|..||.+++ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 457778899999999999999999 88999999999974
No 98
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=87.80 E-value=2.6 Score=36.57 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=47.1
Q ss_pred cEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCChhhhccccccCCCEEEE
Q 004798 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtL~------G-Kt~tLeVdpsdTV~dLKekIaektG-IPp--eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
+|+|+|+... | ....+++....||.+|++.+..++. +.. ....+..+|+... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4788998873 3 4566788888999999999977651 111 1124556777654 3456889999988
Q ss_pred eeec
Q 004798 88 VVRQ 91 (730)
Q Consensus 88 VlRl 91 (730)
+-..
T Consensus 76 ~Ppv 79 (82)
T PLN02799 76 IPPI 79 (82)
T ss_pred eCCC
Confidence 7543
No 99
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=86.68 E-value=0.072 Score=44.22 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.2
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.+.++.||++||.+|+ ..|+|++.|+|+|.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 5666788999999999999999 89999999999964
No 100
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.56 E-value=3.1 Score=37.53 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=38.4
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004798 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (730)
Q Consensus 20 qItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK 66 (730)
.|+|.+- + ++.|+|.+..+..+|+++|.++.++|+++.+|.|+..
T Consensus 4 vvKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 3455442 2 8899999999999999999999999999999999863
No 101
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.07 E-value=5.8 Score=38.64 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC--C----eecCChhhhcccccc-CCCEEEEe
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIFk--G----KvLkDdkTLsdYGIq-dGSTLhLV 88 (730)
..+.|.|..++|.+..+.+++++|+.+|.+.|+++.|+.... --|.+. + ..|+..++|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 357889999999999999999999999999999999995422 233332 1 345666777777654 33455555
Q ss_pred eec
Q 004798 89 VRQ 91 (730)
Q Consensus 89 lRl 91 (730)
+|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 443
No 102
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=85.89 E-value=1.3 Score=49.26 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCh--hhhccccccCCCEEEEeeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDd--kTLsdYGIqdGSTLhLVlRl 91 (730)
..+++.++|..+.....|+..+...++++.+..-|+|++++|.++ ..|..||++++++|.+-.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 568889999999999999999999999999999999999998655 78999999999998775543
No 103
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.53 E-value=4.8 Score=33.67 Aligned_cols=63 Identities=6% Similarity=0.231 Sum_probs=44.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
|+|+| +|+.+.+ + ..||.+|.+.+ ++.++...+.++++.+. .....++-|++|+.|.++--..
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEecc
Confidence 44544 6777776 3 45898888765 56666666788888876 3455677899999999876443
No 104
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=85.21 E-value=3.4 Score=35.36 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=40.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK 66 (730)
++|+++. ++..+.+.+....|..+|+.+|.+++++.....+|.|...
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 5677777 6788899999999999999999999998877888888753
No 105
>PRK06437 hypothetical protein; Provisional
Probab=85.02 E-value=5.5 Score=34.05 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=45.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+++...++++...||.+|-++ .+++++...+..+|+.+. .++-|++|+.|.++--.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVF 64 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecc
Confidence 557778888888999887754 478888888899999987 66788899999887543
No 106
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.89 E-value=6.7 Score=33.58 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=46.2
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+|+|++... .+...++++...||.+|.+++ +++.+...+..+|+.+. .++-|++|+.|.++--.
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVV 67 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccc
Confidence 356666332 235677888889999888765 67777777888998884 36678999999887543
No 107
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=84.67 E-value=3.8 Score=37.55 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C-eecC-ChhhhccccccCCCEEEEeeecCCC
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G-KVLK-DDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk----G-KvLk-DdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..++..+...+||..+++.+.+.+.| .++-||--. + ..|. .+.||.+.+|.+|-+|.|-.|...+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 35677889999999999999999999 677888532 2 2464 4579999999999999888876553
No 108
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=84.24 E-value=0.12 Score=45.77 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++++..||..++ +.|++++++||+|.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~ 57 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD 57 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 457788899999999999999999 99999999999986
No 109
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=83.11 E-value=0.1 Score=44.11 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=30.6
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.|+ ..+.++++.||..||.+|+ +.|+++++|||+|.
T Consensus 9 ~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 9 KDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred CCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 344 3688999999999999998 88999999999763
No 110
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=82.84 E-value=9.1 Score=34.48 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=49.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+..+.+|+|+| +|+.+.+ +...||.+|-+. .++++...-+.++|..+. .....++-+++|+.|.++--.
T Consensus 12 ~~~~~~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 12 EGAAMVLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred cCCCCceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEe
Confidence 344455566666 6676554 567788777664 477777777889999883 445677789999999987644
Q ss_pred C
Q 004798 92 P 92 (730)
Q Consensus 92 p 92 (730)
.
T Consensus 82 g 82 (84)
T PRK06083 82 A 82 (84)
T ss_pred c
Confidence 3
No 111
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=82.03 E-value=0.066 Score=44.32 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.++.||..||..|. ..|+|++.|+|+|.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 356778899999999999999999 88999999999874
No 112
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=81.99 E-value=0.16 Score=44.99 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=23.2
Q ss_pred cCCchhccccccc-C--CCCC-cchhHHHHH
Q 004798 116 PSVVIETFNLPDR-G--DGVP-SEISQIVSA 142 (730)
Q Consensus 116 pSdTI~~VK~~Iq-~--EGIP-pdqQRLIfa 142 (730)
.++||..||.+|+ + +|++ +++|||||+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 4789999999999 5 6785 999999985
No 113
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=81.20 E-value=0.48 Score=51.66 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEecCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCChhh
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDDQL 73 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVd---p--sdTV~dLKekIae----------ktGIPpeqQR-----LIFkGKvLkDdkT 73 (730)
.....|.|++|.+-.-.+.|.+. + +.+|.+||..++. +.++|.+..+ |.|+-|.+-|.++
T Consensus 74 gs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 74 GSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 44566889999886655554332 3 5889999999999 8899998888 9999999999999
Q ss_pred hccccc
Q 004798 74 LSAYHV 79 (730)
Q Consensus 74 LsdYGI 79 (730)
|.+..-
T Consensus 154 l~e~l~ 159 (309)
T PF12754_consen 154 LAEVLA 159 (309)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 988743
No 114
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=80.81 E-value=4.1 Score=37.07 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.4
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEeC
Q 004798 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLICR 64 (730)
Q Consensus 20 qItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp---eqQRLIFk 64 (730)
.+++|...|+.+.+.+.+++.+.+|++.|.+++|+.. ....|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 4678888999999999999999999999999999887 35677775
No 115
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.60 E-value=0.21 Score=55.76 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCC---CCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EG---IPpdqQRLIfa 142 (730)
..|+.+.+.|++++||.+||.+|+ ..| +++++|+|||.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~ 49 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS 49 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence 567788899999999999999999 666 99999999987
No 116
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=78.17 E-value=5.8 Score=33.71 Aligned_cols=56 Identities=14% Similarity=0.377 Sum_probs=40.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|+|+| +|+. ++++...|+.+||.++..... .+||+|-..+++ +-+++|+.|.|+.|
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDAD------IVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 45555 4454 567778899999998775433 679999887765 55677899888764
No 117
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=78.00 E-value=0.27 Score=43.81 Aligned_cols=38 Identities=0% Similarity=-0.115 Sum_probs=28.4
Q ss_pred CCCCC--cccccccCCchhccccccc-C-C-CCCcchhHHHHH
Q 004798 105 GTSRS--HGSHVAPSVVIETFNLPDR-G-D-GVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrt--itl~V~pSdTI~~VK~~Iq-~-E-GIPpdqQRLIfa 142 (730)
..++. +.+++.+++||..||.+|. . . ..++++|||||+
T Consensus 9 ~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 9 PNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 34444 4455689999999999998 3 2 355799999985
No 118
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=77.38 E-value=12 Score=32.79 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=41.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----CC------CCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGV-----LS------EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGI-----Pp------eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
....+++. ..||.+|++.+.+++.- -. ...++..+|+..+++.. +-|++|+.|.++-...
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppvs 86 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVS 86 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCc
Confidence 34667776 89999999999887641 11 23566677877654432 6789999999886543
No 119
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=77.33 E-value=9.9 Score=34.74 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=38.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK 66 (730)
.|+|+|.. .+..+.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46777765 57899999999999999999999999985 5566667654
No 120
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=77.10 E-value=4.1 Score=45.79 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEE--eCCeecCC-hhhhccccccCCCEE
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLI--FkGKvLkD-dkTLsdYGIqdGSTL 85 (730)
..+-.|.||..+|+.+.+.++.+.||.+|+..|.....-.+ ..+.|+ |--|.|.| +.||++.||.+-..|
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34456888888999999999999999999999998875433 355555 55688865 489999999876544
No 121
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=77.01 E-value=12 Score=34.23 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=49.3
Q ss_pred EEEEEecCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCChhhhccc-----cccCCC
Q 004798 20 EIKIKTLDSQTYTLRVD-----KQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (730)
Q Consensus 20 qItVKtL~GKt~tLeVd-----psdTV~dLKekIaektGIPp-eqQRLIFkGK-----vLkDdkTLsdY-----GIqdGS 83 (730)
.|+|+. ++....|.+. ++.+..+|+++|.+.+++++ ....|.|... .|.++.-|.++ .-....
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 466666 5666667776 47999999999999999988 5667788753 34554444332 333677
Q ss_pred EEEEeeec
Q 004798 84 TLHMVVRQ 91 (730)
Q Consensus 84 TLhLVlRl 91 (730)
+|.|.+..
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 88887754
No 122
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=76.98 E-value=17 Score=31.43 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=41.0
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 30 TYTLRVDKQ-VPVPALKEQIASVTG-VL--SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 30 t~tLeVdps-dTV~dLKekIaektG-IP--peqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
...+++... .||.+|++.+.+++. +- ....++..+++.+.+ +.-|++|+.|.++-..
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPV 77 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCC
Confidence 356788766 899999999988864 11 123456677777664 5778999999987543
No 123
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=76.96 E-value=7.5 Score=34.17 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHh---CCCCCCeEEE-eCCeecCChhhhccccccCCCEEEEeeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVT---GVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaekt---GIPpeqQRLI-FkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+|+...++.+.+..+--+.++-.+.. +-|++...|- -.|.+|+-++.+.|||+.++.+|.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 67778888888887776666665554 4677776665 34889999999999999999999998874
No 124
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=76.32 E-value=9 Score=32.74 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.4
Q ss_pred cEEEEEEecCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004798 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 18 tMqItVKtL~GKt~t-LeVdpsdTV~dLKekIaektGIPpeqQRLIFkG 65 (730)
+++|+++.- +..+. +.+....+..+|+.+|+++++.+....+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467888774 45555 899999999999999999999998888999874
No 125
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=76.24 E-value=0.18 Score=40.35 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+...+.|.++.||+.||.+++ ..|+|++.|+|+|.
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 355678999999999999999 89999999999864
No 126
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=76.12 E-value=0.43 Score=44.69 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=31.4
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
...+.|.+++||+++|.+|+ ..+++|+.|+|++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 45688999999999999999 99999999999988
No 127
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=74.40 E-value=6.9 Score=35.91 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.+...++-..++..||+.++.+.++.-+.-.+...+..|+++++|-+-+|+-.-++.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 345577888999999999999999999998998999889999999999999888888877643
No 128
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=73.22 E-value=8.3 Score=37.34 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=43.5
Q ss_pred EEE-EecC-CCCHHHHHHHHHHHh----CCCC------CCeEEEeCC-----------------eec---CChhhhcccc
Q 004798 31 YTL-RVDK-QVPVPALKEQIASVT----GVLS------EQQRLICRG-----------------KVL---KDDQLLSAYH 78 (730)
Q Consensus 31 ~tL-eVdp-sdTV~dLKekIaekt----GIPp------eqQRLIFkG-----------------KvL---kDdkTLsdYG 78 (730)
+.+ .|+. +.||.+||+.+.+.. +++| +..+|+++- .+| +++++|.+||
T Consensus 17 ~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~g 96 (122)
T PF10209_consen 17 LVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELG 96 (122)
T ss_pred eeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcC
Confidence 344 4886 899999999887754 4555 345665431 356 6778999999
Q ss_pred ccCCCEEEEeee
Q 004798 79 VEDGHTLHMVVR 90 (730)
Q Consensus 79 IqdGSTLhLVlR 90 (730)
|++...|-+..+
T Consensus 97 v~nETEiSfF~~ 108 (122)
T PF10209_consen 97 VENETEISFFNM 108 (122)
T ss_pred CCccceeeeeCH
Confidence 999999888754
No 129
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=72.11 E-value=17 Score=41.78 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=57.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCC------CCCeEEE-eCCeecCChhhhccccccCCCEEEEeeec
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL------SEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIP------peqQRLI-FkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+|+|... .+..++-+..+..|.+|-..|-+..+-. ...-.|. .+|..|+.+++|.+.+|.||++|+|.-+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 56788774 4567788888999999999998887631 1233444 45789999999999999999999998755
Q ss_pred CCC
Q 004798 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 443
No 130
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=71.19 E-value=14 Score=31.40 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.8
Q ss_pred EEEEEecCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004798 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 20 qItVKtL~GKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIFkG 65 (730)
+|+++. +|..+.+.+. ...+..+|+.+|.+++++.....+|.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 466666 3677888888 89999999999999999877677777775
No 131
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=70.99 E-value=20 Score=30.27 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+|+.+.+ ....||.+|-+. .+++++..-+.++++.+..+.- ..+ +++|+.|.++--..
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~Vg 63 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQ 63 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeecc
Confidence 6676655 456787766553 5788888899999998854322 246 99999999876443
No 132
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=69.47 E-value=35 Score=28.76 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
|+|+| +|+.+.+ ....||.+|.+. .++......+..+++.+.. ....++-|++|+.|.++--..
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~ 64 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEcc
Confidence 45555 5676554 566789888865 3555566778888988742 234555689999998876443
No 133
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=69.25 E-value=18 Score=30.32 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=48.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGI--PpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...+.+....||.+|.+++..++.- ..+..++..+|+.+.+ ...++-+++|++|.++-...
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCC
Confidence 5677888999999999999887631 2366788899999888 37778899999999986543
No 134
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=67.99 E-value=32 Score=28.53 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+... ...++-+++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHAL 63 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEe
Confidence 66755 45567788877654 57888888888999887644 3445668999999887543
No 135
>smart00455 RBD Raf-like Ras-binding domain.
Probab=65.96 E-value=16 Score=31.70 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.3
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG 65 (730)
+.|-..+|+...+.+.+..||.++-.++.++.|+.++...|.+.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678899999999999999999999999999999988888755
No 136
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=65.04 E-value=13 Score=39.11 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEecCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC----e--ecCChhhhccccccC
Q 004798 14 SSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG----K--VLKDDQLLSAYHVED 81 (730)
Q Consensus 14 ~s~stMqItVKtL~G--Kt~t----LeVdpsdTV~dLKekIaektGIPpeqQRLIFkG----K--vLkDdkTLsdYGIqd 81 (730)
.....+-||+|..|- +++. +-|+.+.+|.+|-..|.++.|+|++..-++|.- + .|+...+|..+.|.+
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~ 143 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQD 143 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--T
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCC
Confidence 345579999998763 3332 478899999999999999999999877666653 3 467889999999999
Q ss_pred CCEEEEeeecC
Q 004798 82 GHTLHMVVRQP 92 (730)
Q Consensus 82 GSTLhLVlRlp 92 (730)
|+.|.+=....
T Consensus 144 GdIi~fQ~~~~ 154 (249)
T PF12436_consen 144 GDIICFQRAPS 154 (249)
T ss_dssp TEEEEEEE--G
T ss_pred CCEEEEEeccc
Confidence 99998876543
No 137
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=64.22 E-value=40 Score=30.76 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=50.4
Q ss_pred CCcEEEEEEec-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEeCCe--ecCChhhhcccc-----ccC
Q 004798 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLSE----QQRLICRGK--VLKDDQLLSAYH-----VED 81 (730)
Q Consensus 16 ~stMqItVKtL-~GKt~tLeVdpsdTV~dLKekIaek--tGIPpe----qQRLIFkGK--vLkDdkTLsdYG-----Iqd 81 (730)
...+.|.|... +...++|.|+.+.|+.+|.+++..+ ...... +-.|--.|+ -|..+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 45688899887 4567899999999999999988776 222222 456666675 466778888874 567
Q ss_pred CCEEEEeee
Q 004798 82 GHTLHMVVR 90 (730)
Q Consensus 82 GSTLhLVlR 90 (730)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 777887764
No 138
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.96 E-value=11 Score=42.14 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=45.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---Ceec-----CChhhhccccccCCCEEEEe
Q 004798 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVL-----KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIFk---GKvL-----kDdkTLsdYGIqdGSTLhLV 88 (730)
.-|+-.-||.+||+++..+.|+.+.++||+|- ||.- .-++.|-.|+|++|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34556789999999999999999999999874 4432 33578999999999988764
No 139
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=63.66 E-value=39 Score=31.44 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=52.3
Q ss_pred CcEEEEEEecC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCe--ecCChhhhcccc-----ccC
Q 004798 17 TTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGK--VLKDDQLLSAYH-----VED 81 (730)
Q Consensus 17 stMqItVKtL~-GKt~tLeVdpsdTV~dLKekIaekt----G--IPpe-qQRLIFkGK--vLkDdkTLsdYG-----Iqd 81 (730)
..+.|.|...+ ...+++.+++++++.+|.+.+..+. + .+++ +-.|--.|+ -|..+..|.+|. ++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 45777777654 3568999999999999999887762 1 2222 456666675 356667777663 677
Q ss_pred CCEEEEeeec
Q 004798 82 GHTLHMVVRQ 91 (730)
Q Consensus 82 GSTLhLVlRl 91 (730)
|..++|++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8888888764
No 140
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=61.91 E-value=0.97 Score=43.02 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=26.5
Q ss_pred cccccCCchhccccccc------CCCCC--cchhHHHHH
Q 004798 112 SHVAPSVVIETFNLPDR------GDGVP--SEISQIVSA 142 (730)
Q Consensus 112 l~V~pSdTI~~VK~~Iq------~EGIP--pdqQRLIfa 142 (730)
..+.+++||.+||.+|+ ++|+| +++|+|||+
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 56789999999999997 35666 999999986
No 141
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=60.67 E-value=32 Score=28.72 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+|+.+. ++...||.+|.+++ +++.+...+.++|+.+..+ ...++-|++|++|.++--..
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~ 63 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVG 63 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 556544 45678999888765 4677888888999887543 34456699999999876443
No 142
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=60.55 E-value=21 Score=31.40 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=39.7
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG 65 (730)
+.|-..+|+.-.+.|.+.+||.++-+++.++.++.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778999999999999999999999999999999887776654
No 143
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=59.79 E-value=60 Score=28.15 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=40.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE--eCC----eecCCh-hhhcc--ccccCCCEEEEeee
Q 004798 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI--CRG----KVLKDD-QLLSA--YHVEDGHTLHMVVR 90 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIP--peqQRLI--FkG----KvLkDd-kTLsd--YGIqdGSTLhLVlR 90 (730)
+...+|.|..++|..+|-+.+.+++++. ++...|+ +.+ +.|.|+ +.|.- ..........+++|
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr 85 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLR 85 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEe
Confidence 5667899999999999999999999987 3444444 222 456554 44432 22233444555554
No 144
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=59.70 E-value=50 Score=30.28 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=44.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCChhhhccc
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSAY 77 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk-------GKvLkDdkTLsdY 77 (730)
.-|+|-..||....|.|+..+|+.++-+++..+.++..+.-.-+|. .+.|+|+..|-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 3467777899999999999999999999999999876654332222 3677888665443
No 145
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=59.59 E-value=21 Score=42.11 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=48.9
Q ss_pred CCCcEEEEEEecC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe--C--Ce-ecCCh--------
Q 004798 15 SETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC--R--GK-VLKDD-------- 71 (730)
Q Consensus 15 s~stMqItVKtL~--GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF--k--GK-vLkDd-------- 71 (730)
.-.+|.|+|-..+ ...+.+.|-..|||.++|+||-+.. +.| +++.-|.+ . |+ +|+|.
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 3355777765543 2458889999999999999997753 222 23444432 2 22 45432
Q ss_pred -----hhhccccccCCCEEEEeeecC
Q 004798 72 -----QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 72 -----kTLsdYGIqdGSTLhLVlRlp 92 (730)
.||+.|+|.||++|-|+.+..
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES--
T ss_pred CceEeccHhhcCCCCCceEEEeeccc
Confidence 368999999999999999864
No 146
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=57.35 E-value=65 Score=26.59 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+|+.+. +....||.+|.+.+ ++. ....+.++|+.+.... ..+.-+++|+.|.++--..
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVA 63 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeecc
Confidence 566554 55678899888765 333 3456778888764322 3344589999999986543
No 147
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=56.02 E-value=32 Score=31.16 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=30.8
Q ss_pred EEEEEEecCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdp--sdTV~dLKekIaektGIP 55 (730)
++|++.. +|.++.+.+++ +.+..+|+++|+..+++.
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3566666 67888899988 779999999999999998
No 148
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=54.77 E-value=1.4 Score=34.83 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
..|+.+.+.+.++++|..+|.+|. ..|+++++|+|.+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 457778899999999999999999 8899999999554
No 149
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=54.51 E-value=57 Score=27.21 Aligned_cols=60 Identities=12% Similarity=0.279 Sum_probs=42.1
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 26 L~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
++|+.+.+ ....||.+|.+++ +++++...+.++|+.+..+ ...++-|++|+.|.++--..
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 36666554 5567899888754 5667777788899887432 34456799999999876443
No 150
>PRK07440 hypothetical protein; Provisional
Probab=53.15 E-value=1e+02 Score=26.71 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=45.0
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.|+|+| +|+. +++....||.+|-+ ..+++++..-+.++|+.+.- ....++-+++|+.|.++--.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEe
Confidence 466665 5675 44566788887765 45677777788899988753 24556779999999887544
No 151
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=50.83 E-value=76 Score=27.22 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=44.2
Q ss_pred EEEEecCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE-e---CC--eecCCh-hhhccccc--cCCCEE
Q 004798 21 IKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLI-C---RG--KVLKDD-QLLSAYHV--EDGHTL 85 (730)
Q Consensus 21 ItVKtL~GK----t~tLeVdpsdTV~dLKekIaektGI--PpeqQRLI-F---kG--KvLkDd-kTLsdYGI--qdGSTL 85 (730)
|+|-..++. ..+|.|...+|+.+|-+++.+++++ .+....|. + .| +.|.|+ ..|.-+.- .++...
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~~ 84 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQNS 84 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTTE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCce
Confidence 445555555 7789999999999999999999998 33445663 2 23 467654 44433322 111245
Q ss_pred EEeeec
Q 004798 86 HMVVRQ 91 (730)
Q Consensus 86 hLVlRl 91 (730)
.|++|.
T Consensus 85 ~f~lr~ 90 (93)
T PF00788_consen 85 RFVLRR 90 (93)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
No 152
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=50.01 E-value=46 Score=30.87 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.9
Q ss_pred EEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004798 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (730)
Q Consensus 23 VKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF 63 (730)
++..+|.+..+.|+.+.+..+|+.++.+.+++... ..|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57788999999999999999999999999998875 55554
No 153
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=48.17 E-value=1.1e+02 Score=26.12 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=40.1
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdps-dTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+|+.+.+ ... .||.+|-+ ..+++++..-+.++++.+.-+ ...++-|++|+.|.++--.
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 6776654 443 57776654 457777777788999888533 3556678999999887543
No 154
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=48.06 E-value=54 Score=29.96 Aligned_cols=58 Identities=34% Similarity=0.477 Sum_probs=36.7
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCh---hhh--ccccccCCCEEEEeeecC
Q 004798 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL--SAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIFk-GK------vLkDd---kTL--sdYGIqdGSTLhLVlRlp 92 (730)
++++...||.+|-+.+.+++ +..+.+|+.. |+ +|-++ ..| .+|-+++|+.|.++-...
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCC
Confidence 34445679999999998876 3344445443 32 33333 234 468899999999885443
No 155
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=47.48 E-value=74 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=38.4
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCh
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDD 71 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG--KvLkDd 71 (730)
+.|-..+++...+.|.+..||.++-.++.++.++.++...+...| |.|..+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 556678899999999999999999999999999999877666544 455433
No 156
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=46.81 E-value=34 Score=41.60 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvL 68 (730)
+...+.+-++++.|+..|++.|.+.+|||...|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 456788899999999999999999999999999999997643
No 157
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=45.73 E-value=20 Score=32.28 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=30.1
Q ss_pred EEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCChhhhccccccCCCEEEEe
Q 004798 33 LRVD-KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 33 LeVd-psdTV~dLKekIae-ktGIPpe----qQRLIFkGKv----LkDdkTLsdYGIqdGSTLhLV 88 (730)
+.++ ..+|+.+|-++|-+ +.|+-.. .-+++|.... -..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 46899999988754 5565432 2344554322 123589999999999988764
No 158
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=45.58 E-value=1.9 Score=34.82 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=29.8
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
+++.....+.++.+|..||..|. ..|++++.|+|+|
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 35556677888999999999999 8899999998854
No 159
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=45.27 E-value=51 Score=29.35 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=40.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEe------CCeecCChhhhccccccCCCEEEEeeec
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-IPpeqQRLIF------kGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
++|-+=.+++.||.+|+..|.+++. +.|....|.. .|.-|..+-++.+. +..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4555568899999999999999985 4555443321 13344444455554 3468888888763
No 160
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=44.15 E-value=9.7 Score=41.91 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.7
Q ss_pred ecCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhh
Q 004798 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (730)
Q Consensus 25 tL~GKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTL 74 (730)
..+|.++.+.+. ....|..||.+|....+|++..|++.|.|..|+|...+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 446788887776 78889999999999999999999999999999998544
No 161
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=43.93 E-value=1.9e+02 Score=25.28 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=32.6
Q ss_pred EEecC-CCCHHHHHHHHHHHhCC-----CCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 33 LRVDK-QVPVPALKEQIASVTGV-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 33 LeVdp-sdTV~dLKekIaektGI-----PpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
++++. ..||.+|++.+.+++.- .....++..+++... .++-|++|+.|-++-..
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PPV 78 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPV 78 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCCC
Confidence 34433 47999999999887621 112233334443322 24568999999887543
No 162
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=43.03 E-value=26 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.7
Q ss_pred EEEeCCeecCChhhhccccccCC--CEEEEeeecCCC
Q 004798 60 RLICRGKVLKDDQLLSAYHVEDG--HTLHMVVRQPVP 94 (730)
Q Consensus 60 RLIFkGKvLkDdkTLsdYGIqdG--STLhLVlRlpgg 94 (730)
.|-|.||.|..+++|++| |... .+|.+-+...+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccCCC
Confidence 478999999999999999 4443 444444444443
No 163
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=42.08 E-value=79 Score=32.64 Aligned_cols=104 Identities=22% Similarity=0.179 Sum_probs=50.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EeCCe---ecCChhhhccccccCCCEEEEeeecCCC--CC-C
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRL--ICRGK---VLKDDQLLSAYHVEDGHTLHMVVRQPVP--SS-S 97 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpe---qQRL--IFkGK---vLkDdkTLsdYGIqdGSTLhLVlRlpgg--p~-s 97 (730)
+.+.+-|..+.||.+|.+++..+.+++.+ ..|| ++++| .|..+..|..+ .+..++.+-.-.... .. .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35778899999999999999999998765 4455 36676 46677777665 333333222110000 00 0
Q ss_pred --CCCCCCC-----C----CCCCcccccccCCchhccccccc-CCCCCc
Q 004798 98 --DGTHNLP-----G----TSRSHGSHVAPSVVIETFNLPDR-GDGVPS 134 (730)
Q Consensus 98 --s~~sI~v-----~----tGrtitl~V~pSdTI~~VK~~Iq-~EGIPp 134 (730)
...-+.+ . -|-..-+.|.++.++..+|..|+ +.|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 0010111 1 12222367889999999999998 777755
No 164
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=41.40 E-value=1.1e+02 Score=29.56 Aligned_cols=52 Identities=2% Similarity=0.182 Sum_probs=41.6
Q ss_pred CcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004798 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (730)
Q Consensus 17 stMqItVKtL~G----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvL 68 (730)
..+.|.+|..++ |+-.+.|++++|++.+-..|.+..+++..++-++|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 456777776543 4556789999999999999999999999998888766544
No 165
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.02 E-value=65 Score=35.32 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC-h--hhhccccccCCCEEEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD-D--QLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLkD-d--kTLsdYGIqdGSTLhL 87 (730)
....|.||..||+++...+....|+..|..-|..+++...+-..|. |--+.+.+ | ++|..+++..-++|.|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 5578899999999999999999999999999999988765444433 44556633 2 7888888887776654
No 166
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.02 E-value=57 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG 65 (730)
-++.|.+.+..+..+|..+|.++...+++.-+|.|+-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 3566788899999999999999999999999999974
No 167
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.40 E-value=10 Score=43.69 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCcE--EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 17 TTIEIKIKTLDSQT--YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 stMqItVKtL~GKt--~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+++.|+.-...+.. ..++.....|=.+|..+|++++||+-...+.|.+||+|.-.+||.+-|++....+.+++.
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 34555544433221 234555677788999999999999999999999999999999999999988776666554
No 168
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=40.35 E-value=33 Score=38.55 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=52.0
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEEeCC---eec--CChhhhccccccCCCE
Q 004798 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHT 84 (730)
Q Consensus 20 qItVKtL~GKt~tLeVdpsdTV~dLKekIaekt-GIPpeqQRLIFkG---KvL--kDdkTLsdYGIqdGST 84 (730)
.|.||+++|+.....+-++++|..|-.-+.... |.+-+..+|+++= |.| +.+.||.++||.+-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 499999999887777788999988887776665 4566778999876 655 3468999999998765
No 169
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=39.55 E-value=97 Score=34.67 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=49.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+| +|+.+. +....||.+|-++ .+++++...+.++|+.+. .....++-|++|+.|.++--..+++
T Consensus 1 M~I~V---NGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 1 MRIRL---NGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred CEEEE---CCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCCC
Confidence 44444 667544 4566788777654 578888889999999884 3345677799999999998777754
No 170
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=39.11 E-value=7.9 Score=44.84 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.5
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHHh
Q 004798 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 110 itl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfav 143 (730)
..+.|..+.+|..||..|. .-++++|+++|||+-
T Consensus 27 ~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaG 61 (493)
T KOG0010|consen 27 YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAG 61 (493)
T ss_pred eeEecccchHHHHHHHHHHHhcCCChhHeeeeecC
Confidence 4578899999999999999 789999999999973
No 171
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.31 E-value=86 Score=28.73 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=42.2
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCChhhhccc
Q 004798 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY 77 (730)
Q Consensus 20 qItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK-----vLkDdkTLsdY 77 (730)
+.+||. +|.+..+.+...-+...|++||+..+.+|....-|.|-.. .|.++.-|.++
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 567766 5677777777788999999999999999988777776432 34555555554
No 172
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=38.15 E-value=1.2e+02 Score=35.32 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCC---hhhhccccccCCCEEEEeee
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL--IFkGKvLkD---dkTLsdYGIqdGSTLhLVlR 90 (730)
....+|.|+..+|..|+-.+..++-+..+|+.|...-++.....-| .|--|+..| +++|.++.+.+...|.|+-+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 3557899999999999988888888889999999887776665555 477777743 38999999999888877776
Q ss_pred cCC
Q 004798 91 QPV 93 (730)
Q Consensus 91 lpg 93 (730)
...
T Consensus 392 ~r~ 394 (506)
T KOG2507|consen 392 KRA 394 (506)
T ss_pred CCc
Confidence 554
No 173
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=34.78 E-value=1.2e+02 Score=27.34 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=41.4
Q ss_pred EEEEecCC-cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCChhhhccccccCCCEEEEeeec
Q 004798 21 IKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 21 ItVKtL~G-Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--kGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
++|+..+. +++-|-. .++.+|+.|..+++.++.+..+|+. .|-.++|+.-+..+ ...|+.|++..
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L~~ 72 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLLEK 72 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEEES
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEECC
Confidence 34555442 3344444 5899999999999999977777665 58888776444332 34566565543
No 174
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=34.45 E-value=92 Score=37.01 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=56.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eC----CeecCChhh----hccccccCCCEEEE
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CR----GKVLKDDQL----LSAYHVEDGHTLHM 87 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLI--Fk----GKvLkDdkT----LsdYGIqdGSTLhL 87 (730)
+-|+|-+-||....|.|+..+|+.++-+.+.+|..+-.+. -.|+ |. -+.++|+.. |.++.+..+..|.+
T Consensus 189 lvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~lF 268 (622)
T KOG3751|consen 189 LVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKLLF 268 (622)
T ss_pred eeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCceeEE
Confidence 4566666789999999999999999999999998765533 3343 22 256788854 67788888899988
Q ss_pred eeecCC
Q 004798 88 VVRQPV 93 (730)
Q Consensus 88 VlRlpg 93 (730)
..+..+
T Consensus 269 ~k~~~K 274 (622)
T KOG3751|consen 269 RKNPAK 274 (622)
T ss_pred eecchh
Confidence 776544
No 175
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=34.02 E-value=69 Score=32.33 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=35.3
Q ss_pred cEEEEEEecCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccc
Q 004798 18 TIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdY 77 (730)
.|.++|+. -.+.++++. .+.+.++++...+.+.++-+ +..|+-++...|+.||
T Consensus 67 ~veL~V~v---Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTVKV---GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEE---eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 35666665 335567776 66666776666665533322 3469999999999998
No 176
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=33.59 E-value=1.1e+02 Score=28.80 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred EEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004798 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (730)
Q Consensus 21 ItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp 56 (730)
|+|-..+|.+..++|....+-.++|.++-+|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566777999999999999999999999999999887
No 177
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.01 E-value=3e+02 Score=26.11 Aligned_cols=75 Identities=25% Similarity=0.312 Sum_probs=46.8
Q ss_pred CcEEEEEEecCCc--------EEE--EEe-cCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-C--Chhhh--
Q 004798 17 TTIEIKIKTLDSQ--------TYT--LRV-DKQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-K--DDQLL-- 74 (730)
Q Consensus 17 stMqItVKtL~GK--------t~t--LeV-dpsdTV~dLKekIaektGIPpeqQRLIFkGK------vL-k--DdkTL-- 74 (730)
+.|.|+|+++.|- .+. ++| +...||.+|-.-|..++--.+++ -++..|. +| . |-..|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 5678888887652 222 333 24578999888888765433333 4555553 23 2 22334
Q ss_pred ccccccCCCEEEEeeecC
Q 004798 75 SAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 75 sdYGIqdGSTLhLVlRlp 92 (730)
.+|.+++|+.|.++-.+.
T Consensus 82 edy~ledgD~ivfiSTlH 99 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLH 99 (101)
T ss_pred cccCcccCCEEEEEEecc
Confidence 479999999998876543
No 178
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=31.01 E-value=80 Score=31.77 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=35.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccc
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdY 77 (730)
.|.++|+. -.+-+++...+.+.++++...+.+-++-+ +..||-+++..|+.||
T Consensus 66 ~veL~V~V---GrI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 66 DVELRVQV---GRIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEE---eEEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 35666665 23456666667777777766666543322 4568899999999998
No 179
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=30.93 E-value=1.5e+02 Score=27.71 Aligned_cols=61 Identities=23% Similarity=0.435 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee---------cCChhhhccccccCCCEEEE
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV---------LKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIFkGKv---------LkDdkTLsdYGIqdGSTLhL 87 (730)
+..++.|.|+++.|=.++|+.|++.+++.+.... |+..|+. +..+..-++.-+..|..|.+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 3478999999999999999999999999887764 4555541 33444444444555555443
No 180
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=30.48 E-value=1.6e+02 Score=27.03 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004798 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIFkGKv 67 (730)
..++.+.|++..|=.++|+.|+..+++.+...+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 468999999999999999999999999997764 5566654
No 181
>PLN02560 enoyl-CoA reductase
Probab=29.95 E-value=8 Score=42.30 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=27.5
Q ss_pred ccccccCCchhccccccc-CCCC-CcchhHHHH
Q 004798 111 GSHVAPSVVIETFNLPDR-GDGV-PSEISQIVS 141 (730)
Q Consensus 111 tl~V~pSdTI~~VK~~Iq-~EGI-PpdqQRLIf 141 (730)
++++.++.||++||.+|+ +.++ ++++|||++
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
Confidence 578899999999999999 6676 899999986
No 182
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=28.98 E-value=12 Score=41.60 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=35.0
Q ss_pred CCCCCCCcccccccCCchhccccccc-CCC--CCcchhHHHHHh
Q 004798 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSAV 143 (730)
Q Consensus 103 ~v~tGrtitl~V~pSdTI~~VK~~Iq-~EG--IPpdqQRLIfav 143 (730)
+++.+.++++.+.|+++|..+|.+|. ..| .|..+|.|||+.
T Consensus 6 KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G 49 (340)
T KOG0011|consen 6 KTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG 49 (340)
T ss_pred eeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc
Confidence 34667788899999999999999999 444 999999999974
No 183
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.79 E-value=1.1e+02 Score=28.40 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=36.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ 59 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQ 59 (730)
++|.|-..+|.++.++|..+++..++-+.+..+.++|.+-.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 46777778899999999999999999999999999987644
No 184
>PRK01777 hypothetical protein; Validated
Probab=27.82 E-value=3.8e+02 Score=24.86 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=43.9
Q ss_pred CcEEEEEEecCC---cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCChhhhccccccCCCEEE
Q 004798 17 TTIEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 stMqItVKtL~G---Kt~tLeVdpsdTV~dLKekIaektGIPpe--q-----QRLIFkGKvLkDdkTLsdYGIqdGSTLh 86 (730)
.+|+|.|....- +.+.+++....||.++-++. ||+.+ + -.+.-.||..+- ++-+++|+.|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEE
Confidence 368888776432 23567888999998876654 55444 2 245556665543 45688999999
Q ss_pred EeeecC
Q 004798 87 MVVRQP 92 (730)
Q Consensus 87 LVlRlp 92 (730)
++-.+.
T Consensus 73 IyrPL~ 78 (95)
T PRK01777 73 IYRPLL 78 (95)
T ss_pred EecCCC
Confidence 986543
No 185
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=26.48 E-value=86 Score=28.42 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=38.5
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCC-------CCeEEEeCCe-ecC------ChhhhccccccCCCEEEEe
Q 004798 33 LRVDKQVPVPALKEQIASVTGVLS-------EQQRLICRGK-VLK------DDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPp-------eqQRLIFkGK-vLk------DdkTLsdYGIqdGSTLhLV 88 (730)
|+|++++|+.+|-+.+.++..+-. ..-.|++.+- .|+ -+++|.++ +.+|..|.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 579999999999999998843322 3344555442 232 24789999 9999988874
No 186
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=26.25 E-value=1.9e+02 Score=28.12 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=47.9
Q ss_pred CcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccc-c--ccCCCEEEEee
Q 004798 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY-H--VEDGHTLHMVV 89 (730)
Q Consensus 17 stMqItVKtL~---GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdY-G--IqdGSTLhLVl 89 (730)
..|-|.|.... .|...+-|..+.||.+|...|..+.++.+++.-|..++.++..+.++++. . -.++--|++..
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 34555554432 23333468999999999999999999999885555566566667777653 1 12344566554
No 187
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.96 E-value=2.3e+02 Score=26.11 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=35.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRG 65 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIFkG 65 (730)
++|++.. +|..+.+.++++.+.++|.+++.+.+....+ ...+.|..
T Consensus 1 i~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D 47 (83)
T cd06404 1 VRVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID 47 (83)
T ss_pred CeEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 3566666 6888889999999999999999999998664 34555543
No 188
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=24.69 E-value=3.1e+02 Score=24.90 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCChhhhccccccCCCEEEEe
Q 004798 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 32 tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk-GKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.+.|........+-+..++++.+|+..--+|-+ |--+...++-.+.-++.|+.|.|+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 367878888888888899999999988887765 777888889999889999999874
No 189
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=24.25 E-value=1.6e+02 Score=31.12 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=32.9
Q ss_pred EEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004798 19 IEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (730)
Q Consensus 19 MqItVKtL~---GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI 62 (730)
+.|+++... ...|.++++..+|-.+|-++|+++.++.|+..||.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 566666543 34799999999999999999999999999999886
No 190
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=23.68 E-value=1.2e+02 Score=27.49 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeecC
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVLK 69 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIFkGKvLk 69 (730)
..+++.|++..|=.++|+.|+..+++.+...+ +++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 67999999999999999999999999997765 557777543
No 191
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=23.59 E-value=3.7e+02 Score=27.09 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=51.4
Q ss_pred CCCCCCcEEEEEEecCCcEE---------------EEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEe--------
Q 004798 12 AESSETTIEIKIKTLDSQTY---------------TLRVDKQVPVPALKEQIASVTG-----VLSEQQRLIC-------- 63 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~---------------tLeVdpsdTV~dLKekIaektG-----IPpeqQRLIF-------- 63 (730)
...++..+.|+.+. +|+.+ .|--..++|+.+|-..|.+..- --.-+..++|
T Consensus 21 ektCPlLlrVf~~~-~g~hH~~def~~g~vPs~elQiYtW~datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y 99 (151)
T KOG3391|consen 21 EKTCPLLLRVFTQF-NGRHHVMDEFEDGNVPSSELQIYTWMDATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRY 99 (151)
T ss_pred cccCcceeeeeeec-CCCCcchhhhhcCCCCchheeEeehhhhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCc
Confidence 44556667777774 33332 2222356889999888877321 0001122332
Q ss_pred ---------CC-eecCChhhhccccccCCCEEEEeeecCCC
Q 004798 64 ---------RG-KVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 64 ---------kG-KvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.| |..+|++||..++++-|+.|.+.+..+..
T Consensus 100 ~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~ 140 (151)
T KOG3391|consen 100 IVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPNR 140 (151)
T ss_pred eeeeecccccCcccCCccchhhhCCccccceEEEEecCccc
Confidence 23 34578899999999999999999987653
No 192
>CHL00030 rpl23 ribosomal protein L23
Probab=23.29 E-value=1.8e+02 Score=26.90 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=32.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 004798 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIFkGK 66 (730)
...|.+.|+.+.+=.++|+.|+..+++.+..-+ ++..||
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 468999999999999999999999999887654 445554
No 193
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=22.60 E-value=6.1e+02 Score=24.14 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=40.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCeecCChhhhcc----ccccCCCEEEEeee
Q 004798 33 LRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKVLKDDQLLSA----YHVEDGHTLHMVVR 90 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQ-RLIFkGKvLkDdkTLsd----YGIqdGSTLhLVlR 90 (730)
+-|..+.||.+|+..|..+..+.+++- -|..++.....+.+|++ |+-+ +..|+|...
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGfLyl~Ys 106 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDE-DGFLYMTYS 106 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCC-CCEEEEEEe
Confidence 458999999999999999999888764 44455545566677655 3333 456666654
No 194
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=22.13 E-value=1.9e+02 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=22.5
Q ss_pred EEEEecCCcE-EEEEec-CCCCHHHHHHHHHHHhCC
Q 004798 21 IKIKTLDSQT-YTLRVD-KQVPVPALKEQIASVTGV 54 (730)
Q Consensus 21 ItVKtL~GKt-~tLeVd-psdTV~dLKekIaektGI 54 (730)
|+-|+...+. ..|.++ ...+|.+||.+|.++.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 3445554443 446776 568999999999887765
No 195
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=21.30 E-value=1.1e+02 Score=38.16 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=48.4
Q ss_pred CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCChhhhcccc-c-cCCCEEEEe
Q 004798 27 DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYH-V-EDGHTLHMV 88 (730)
Q Consensus 27 ~GKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIFk-GKvLkDdkTLsdYG-I-qdGSTLhLV 88 (730)
.|+.++++.+. ..|+.+||.+|.+++|+-...|.|+-. |.++..++.|+.|. . .+-.-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 47778887774 579999999999999999988887755 67888889999887 2 344455555
No 196
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.92 E-value=2.3e+02 Score=25.47 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCChhhhccccccCCCEEEEeee
Q 004798 38 QVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 38 sdTV~dLKekIaektGIPpeqQRLI--FkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
-.+.++|+.|..+++.++....+|. -.|-.++|+.-+.. +. ..|+.|++.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp-~nt~l~~L~ 69 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LP-DNTELMALE 69 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CC-CCcEEEEEc
Confidence 3579999999999999986655554 46888887754433 23 344444443
No 197
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=20.64 E-value=2.4e+02 Score=32.78 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=52.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeC----Cee--cCChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICR----GKV--LKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaekt--GIPpeqQRLIFk----GKv--LkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|-+.++...| ...++|.++++...|-.+|-..+ +..+++.-+.-+ |.. +..++++.|+|++.|..|+|-..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 4566777554 46789999999999998887655 455666655432 222 45679999999999999998873
No 198
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=20.52 E-value=5.2e+02 Score=23.65 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=48.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCChhhhccccccCCCEEEEeeecC
Q 004798 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIFk-GKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+.|........+-+-.++++++++..--+|.+ |--+...++-..+-++.|+.|.|+-|-+
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 57777777888888889999999987776655 6667888899999999999999987643
No 199
>KOG4261 consensus Talin [Cytoskeleton]
Probab=20.47 E-value=1.3e+02 Score=37.28 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=68.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEe------CCeecCChhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektG---IPpeqQRLIF------kGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+.++|... +-+-++.++|+.+|.+--+.|.+++- +-+.+..|+. +|-.|+..++|.+|-+.++++|..-.
T Consensus 4 lsl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~ 82 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR 82 (1003)
T ss_pred eEEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh
Confidence 44555443 45567889999999998888877753 1244444442 35578899999999999999986543
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccccccCCchhccccccc-CCCCC
Q 004798 90 RQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVP 133 (730)
Q Consensus 90 Rlpggp~ss~~sI~v~tGrtitl~V~pSdTI~~VK~~Iq-~EGIP 133 (730)
+... ..+-...|.-.+..|+-+.+|..+++-|. +.||-
T Consensus 83 k~r~------lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 83 KQRP------LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred hccc------ceeeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 3221 11222455555566666666666666555 55553
No 200
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.20 E-value=3e+02 Score=24.77 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=40.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCeecCChhhhccccccCCCEEEEee
Q 004798 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-FkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
++.+.+.++...||+++-+ ..|||..+-.++ .+|+...- +|-+++|+.|.++-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 3567788889999977654 579999888666 46776543 47788999998874
Done!