Query 004798
Match_columns 730
No_of_seqs 288 out of 1427
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 5E-23 1.7E-27 196.2 5.1 126 12-142 14-142 (172)
2 3rt3_B Ubiquitin-like protein 99.9 9.1E-23 3.1E-27 191.3 4.5 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 4.8E-21 1.6E-25 176.0 4.5 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 2.3E-18 7.8E-23 144.0 10.1 77 17-93 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.7 3.8E-18 1.3E-22 146.2 10.4 80 16-96 3-82 (90)
6 4hcn_B Polyubiquitin, ubiquiti 99.7 2.6E-18 9E-23 150.8 9.2 94 1-94 1-98 (98)
7 3dbh_I NEDD8; cell cycle, acti 99.7 4.8E-18 1.7E-22 143.9 10.3 82 13-94 7-88 (88)
8 3v6c_B Ubiquitin; structural g 99.7 1.1E-17 3.9E-22 144.2 10.5 82 11-92 10-91 (91)
9 3plu_A Ubiquitin-like modifier 99.7 8.4E-18 2.9E-22 149.5 9.5 76 14-89 17-92 (93)
10 4fbj_B NEDD8; effector-HOST ta 99.7 1.1E-17 3.8E-22 144.1 9.1 77 19-95 1-77 (88)
11 1wy8_A NP95-like ring finger p 99.7 3.3E-17 1.1E-21 139.9 11.8 82 15-96 4-87 (89)
12 1wx8_A Riken cDNA 4931431F19; 99.7 1.7E-17 5.9E-22 144.2 10.0 86 9-95 8-93 (96)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.7E-17 9.3E-22 139.5 10.9 81 14-94 3-83 (87)
14 1ttn_A DC-UBP, dendritic cell- 99.7 2E-17 6.9E-22 147.4 9.9 84 12-95 17-100 (106)
15 1ndd_A NEDD8, protein (ubiquit 99.7 2.6E-17 8.9E-22 134.8 9.5 76 19-94 1-76 (76)
16 1uh6_A Ubiquitin-like 5; beta- 99.7 1.9E-17 6.4E-22 148.9 9.4 81 9-89 19-99 (100)
17 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3E-17 1E-21 137.7 9.9 78 17-94 2-79 (85)
18 3n3k_B Ubiquitin; hydrolase, p 99.7 1.8E-17 6.2E-22 139.3 8.3 79 17-95 2-80 (85)
19 4eew_A Large proline-rich prot 99.7 3E-17 1E-21 140.1 9.7 76 14-90 13-88 (88)
20 2uyz_B Small ubiquitin-related 99.7 2.7E-17 9.3E-22 137.5 9.1 78 17-94 2-79 (79)
21 2dzi_A Ubiquitin-like protein 99.7 4.8E-17 1.6E-21 135.5 10.2 79 14-92 3-81 (81)
22 2hj8_A Interferon-induced 17 k 99.7 3.5E-17 1.2E-21 140.8 9.3 79 16-94 2-80 (88)
23 2wyq_A HHR23A, UV excision rep 99.7 5E-17 1.7E-21 137.1 10.1 78 16-93 3-83 (85)
24 1wyw_B Ubiquitin-like protein 99.7 3.8E-17 1.3E-21 143.5 9.6 82 13-94 16-97 (97)
25 3a9j_A Ubiquitin; protein comp 99.7 5.7E-17 1.9E-21 132.7 10.0 76 19-94 1-76 (76)
26 1wgd_A Homocysteine-responsive 99.7 4.8E-17 1.6E-21 141.1 9.8 81 16-96 5-91 (93)
27 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.4E-16 4.9E-21 141.5 12.8 82 15-97 14-95 (106)
28 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 5.5E-17 1.9E-21 140.2 9.9 77 19-95 2-78 (96)
29 2faz_A Ubiquitin-like containi 99.7 5.5E-17 1.9E-21 135.1 9.4 75 18-92 2-78 (78)
30 3m62_B UV excision repair prot 99.7 2.3E-17 8E-22 147.4 7.3 78 18-95 1-78 (106)
31 2kk8_A Uncharacterized protein 99.7 6.7E-17 2.3E-21 139.1 9.0 75 16-90 8-83 (84)
32 1uel_A HHR23B, UV excision rep 99.7 1.9E-16 6.4E-21 138.3 11.6 77 19-95 1-80 (95)
33 2l7r_A Ubiquitin-like protein 99.7 6.2E-17 2.1E-21 141.2 8.3 81 12-94 13-93 (93)
34 2kan_A Uncharacterized protein 99.7 1.4E-16 4.7E-21 139.8 10.3 81 14-95 11-92 (94)
35 2kdi_A Ubiquitin, vacuolar pro 99.7 4.7E-17 1.6E-21 147.5 7.4 101 17-122 8-113 (114)
36 3vdz_A Ubiquitin-40S ribosomal 99.7 1.5E-16 5.1E-21 143.3 10.3 79 16-94 33-111 (111)
37 1sif_A Ubiquitin; hydrophobic 99.7 1.4E-16 4.8E-21 137.2 8.8 77 18-94 9-85 (88)
38 4a20_A Ubiquitin-like protein 99.7 1.4E-16 4.8E-21 142.0 8.5 78 15-92 16-97 (98)
39 1wia_A Hypothetical ubiquitin- 99.7 3.3E-16 1.1E-20 136.0 10.6 81 13-96 2-83 (95)
40 2lxa_A Ubiquitin-like protein 99.7 7.8E-17 2.7E-21 140.7 6.6 74 18-91 1-78 (87)
41 1yqb_A Ubiquilin 3; structural 99.7 2.9E-16 1E-20 139.1 10.4 82 13-95 17-98 (100)
42 2bwf_A Ubiquitin-like protein 99.7 2.9E-16 9.8E-21 129.7 9.4 74 17-91 3-76 (77)
43 1v5o_A 1700011N24RIK protein; 99.6 3.7E-16 1.3E-20 138.4 9.9 82 17-98 6-92 (102)
44 2klc_A Ubiquilin-1; ubiquitin- 99.6 5.6E-16 1.9E-20 137.4 10.6 80 14-94 21-100 (101)
45 1v2y_A 3300001G02RIK protein; 99.6 2.7E-16 9.4E-21 142.2 8.3 79 16-94 5-99 (105)
46 1j8c_A Ubiquitin-like protein 99.6 9.2E-16 3.1E-20 141.5 11.9 81 16-97 30-110 (125)
47 1yx5_B Ubiquitin; proteasome, 99.6 5.7E-16 1.9E-20 135.3 9.9 76 19-94 1-76 (98)
48 3b1l_X E3 ubiquitin-protein li 99.4 1.6E-17 5.5E-22 137.4 0.0 75 19-93 1-75 (76)
49 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.3E-15 4.6E-20 139.8 11.9 84 11-94 9-102 (116)
50 2ojr_A Ubiquitin; lanthide-bin 99.6 1.2E-15 4.1E-20 137.0 10.8 79 16-94 33-111 (111)
51 3rt3_B Ubiquitin-like protein 99.6 9.6E-16 3.3E-20 143.6 10.5 79 16-94 79-157 (159)
52 3l0w_B Monoubiquitinated proli 99.6 1.8E-15 6E-20 146.0 10.7 77 19-95 1-77 (169)
53 1v86_A DNA segment, CHR 7, way 99.6 1.8E-15 6E-20 132.8 9.5 82 10-93 9-90 (95)
54 1we6_A Splicing factor, putati 99.6 1.4E-15 4.7E-20 136.5 8.9 79 16-94 25-107 (111)
55 1wju_A NEDD8 ultimate buster-1 99.6 1.6E-15 5.4E-20 136.4 8.9 75 19-94 16-94 (100)
56 1x1m_A Ubiquitin-like protein 99.6 2.6E-15 8.8E-20 134.2 9.7 81 14-94 8-103 (107)
57 1wxv_A BAG-family molecular ch 99.6 4.6E-15 1.6E-19 128.1 10.8 78 15-93 4-87 (92)
58 2gow_A HCG-1 protein, ubiquiti 99.6 2.9E-15 1E-19 139.1 9.4 83 12-94 11-103 (125)
59 1v5t_A 8430435I17RIK protein; 99.6 3.2E-15 1.1E-19 129.6 8.8 77 15-92 4-84 (90)
60 2fnj_B Transcription elongatio 99.6 2.3E-15 7.9E-20 138.9 7.8 72 19-90 1-80 (118)
61 1wgg_A Ubiquitin carboxyl-term 99.6 7.6E-15 2.6E-19 129.3 10.5 76 15-92 4-80 (96)
62 2kdb_A Homocysteine-responsive 99.6 2.5E-15 8.6E-20 134.0 7.0 75 14-88 19-99 (99)
63 1se9_A Ubiquitin family; ubiqu 99.6 6.2E-15 2.1E-19 137.4 9.7 81 14-94 12-106 (126)
64 3q3f_A Ribonuclease/ubiquitin 99.6 5.3E-15 1.8E-19 145.9 9.5 77 18-94 105-181 (189)
65 3m63_B Ubiquitin domain-contai 99.6 1.4E-15 4.7E-20 135.2 4.7 75 16-91 26-100 (101)
66 4ajy_B Transcription elongatio 99.6 4.2E-15 1.4E-19 137.3 8.0 73 19-91 1-81 (118)
67 2daf_A FLJ35834 protein; hypot 99.6 3.3E-14 1.1E-18 131.2 13.8 82 12-93 9-91 (118)
68 3u30_A Ubiquitin, linear DI-ub 99.6 6.2E-15 2.1E-19 140.4 9.0 78 17-94 95-172 (172)
69 1we7_A SF3A1 protein; structur 99.6 1.3E-14 4.3E-19 131.1 10.2 78 17-94 24-111 (115)
70 3b08_A Polyubiquitin-C, ubiqui 99.5 1.5E-14 5.2E-19 132.8 10.4 78 17-94 75-152 (152)
71 3u5e_m 60S ribosomal protein L 99.5 5.2E-16 1.8E-20 142.7 0.0 76 19-94 1-76 (128)
72 4dbg_A Ranbp-type and C3HC4-ty 99.5 1.9E-14 6.4E-19 130.5 9.9 79 14-92 20-101 (105)
73 2kd0_A LRR repeats and ubiquit 99.5 3.2E-14 1.1E-18 122.4 9.0 73 17-90 11-83 (85)
74 3u5c_f 40S ribosomal protein S 99.5 3.1E-15 1.1E-19 142.8 0.0 77 19-95 1-77 (152)
75 2dzm_A FAS-associated factor 1 99.5 1.1E-13 3.7E-18 124.1 9.8 75 18-93 8-84 (100)
76 1oqy_A HHR23A, UV excision rep 99.5 3.4E-14 1.2E-18 152.4 7.5 80 15-94 4-87 (368)
77 2dzj_A Synaptic glycoprotein S 99.4 1.1E-13 3.9E-18 120.5 7.2 72 16-87 8-85 (88)
78 2kjr_A CG11242; UBL, ubiquitin 99.4 3.2E-13 1.1E-17 119.6 10.0 77 12-88 9-93 (95)
79 4b6w_A Tubulin-specific chaper 99.4 1.3E-13 4.6E-18 119.8 6.9 75 18-92 2-85 (86)
80 3ai5_A Yeast enhanced green fl 99.4 3.3E-13 1.1E-17 141.8 9.8 80 13-92 228-307 (307)
81 1wf9_A NPL4 family protein; be 99.4 5.9E-13 2E-17 119.2 8.6 76 17-93 6-97 (107)
82 2kj6_A Tubulin folding cofacto 99.4 1.2E-12 4.1E-17 116.5 9.8 76 15-90 11-95 (97)
83 2io1_B Small ubiquitin-related 99.4 1.2E-12 4E-17 115.7 8.8 80 15-94 4-83 (94)
84 1v6e_A Cytoskeleton-associated 99.4 1.3E-12 4.6E-17 114.2 8.9 76 16-91 5-88 (95)
85 1t0y_A Tubulin folding cofacto 99.3 3.2E-12 1.1E-16 117.1 10.0 76 17-92 5-88 (122)
86 2xzm_9 RPS31E; ribosome, trans 99.3 1.1E-13 3.6E-18 136.9 0.0 72 19-95 1-72 (189)
87 1wz0_A Ubiquitin-like protein 99.3 1.9E-11 6.5E-16 110.2 11.5 81 15-95 21-101 (104)
88 2io0_B Small ubiquitin-related 99.3 1.5E-11 5E-16 108.3 10.2 79 16-94 3-81 (91)
89 2d07_B Ubiquitin-like protein 99.3 1.4E-11 4.7E-16 108.5 9.5 80 14-93 13-92 (93)
90 2kzr_A Ubiquitin thioesterase 99.2 1.2E-11 4.1E-16 106.2 6.5 72 19-91 1-78 (86)
91 2k8h_A Small ubiquitin protein 99.2 3.7E-11 1.3E-15 109.5 10.1 82 13-94 21-102 (110)
92 3shq_A UBLCP1; phosphatase, hy 99.2 1.1E-11 3.7E-16 130.7 7.5 75 16-91 3-80 (320)
93 1wm3_A Ubiquitin-like protein 99.2 4.5E-11 1.5E-15 100.0 9.3 72 18-89 1-72 (72)
94 2eke_C Ubiquitin-like protein 99.2 5.4E-11 1.8E-15 107.8 10.4 80 13-93 26-105 (106)
95 3a4r_A Nfatc2-interacting prot 99.2 1.1E-10 3.9E-15 99.6 10.5 74 15-88 4-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 9.3E-10 3.2E-14 96.4 9.2 77 15-91 6-93 (97)
97 3kyd_D Small ubiquitin-related 98.8 1.6E-08 5.6E-13 93.1 10.5 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.6 7.7E-08 2.6E-12 96.0 9.9 81 14-95 25-105 (200)
99 3tix_A Ubiquitin-like protein 98.6 4.6E-08 1.6E-12 97.4 8.1 80 14-94 53-132 (207)
100 3v7o_A Minor nucleoprotein VP3 98.3 5.9E-08 2E-12 97.7 0.2 81 13-94 16-96 (227)
101 2jxx_A Nfatc2-interacting prot 98.2 6.3E-06 2.1E-10 73.8 9.8 77 12-88 19-96 (97)
102 2pjh_A Protein NPL4, nuclear p 98.2 7.6E-07 2.6E-11 76.4 3.4 71 17-88 3-78 (80)
103 3goe_A DNA repair protein RAD6 98.1 1.8E-05 6.3E-10 68.8 9.6 73 17-89 8-81 (82)
104 3uf8_A Ubiquitin-like protein 98.0 1.3E-05 4.3E-10 79.8 9.2 81 14-95 17-97 (209)
105 3ix6_A TS, tsase, thymidylate 97.9 1.8E-06 6E-11 92.8 0.0 81 13-94 16-96 (360)
106 2l76_A Nfatc2-interacting prot 97.8 9.7E-05 3.3E-09 66.2 10.2 78 13-91 16-93 (95)
107 4da1_A Protein phosphatase 1K, 97.8 2.8E-06 9.5E-11 90.7 0.0 79 15-94 27-105 (389)
108 4efo_A Serine/threonine-protei 97.6 9.2E-05 3.1E-09 66.1 7.2 69 20-88 14-86 (94)
109 2bps_A YUKD protein; ubiquitin 97.3 0.0004 1.4E-08 60.5 7.1 71 17-87 3-80 (81)
110 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.00029 9.8E-09 66.1 6.1 70 20-89 13-121 (128)
111 2al3_A TUG long isoform; TUG U 97.0 0.0015 5.1E-08 58.0 7.2 76 18-93 9-84 (90)
112 3qx1_A FAS-associated factor 1 96.8 0.005 1.7E-07 52.6 9.1 74 15-89 4-82 (84)
113 3plu_A Ubiquitin-like modifier 96.7 2.7E-05 9.2E-10 69.4 -5.9 42 101-142 23-67 (93)
114 1wju_A NEDD8 ultimate buster-1 96.7 0.00017 5.8E-09 64.9 -1.5 36 107-142 29-65 (100)
115 2dzk_A UBX domain-containing p 96.6 0.015 5E-07 52.5 10.7 78 15-92 10-92 (109)
116 4eew_A Large proline-rich prot 96.5 4.7E-05 1.6E-09 64.6 -5.8 59 79-142 2-63 (88)
117 2xzm_9 RPS31E; ribosome, trans 96.5 0.00041 1.4E-08 68.8 0.0 42 101-142 2-46 (189)
118 1uh6_A Ubiquitin-like 5; beta- 96.3 0.00012 4.1E-09 65.8 -4.8 42 101-142 30-74 (100)
119 1wj4_A KIAA0794 protein; UBX d 96.2 0.016 5.3E-07 53.6 8.5 75 15-90 40-119 (124)
120 3m63_B Ubiquitin domain-contai 96.0 0.00028 9.5E-09 62.5 -3.7 65 71-142 7-73 (101)
121 2lxa_A Ubiquitin-like protein 95.9 0.00032 1.1E-08 61.0 -3.8 38 105-142 9-50 (87)
122 2cr5_A Reproduction 8; UBX dom 95.6 0.097 3.3E-06 47.0 10.9 74 16-90 21-98 (109)
123 1s3s_G P47 protein; AAA ATPase 95.4 0.039 1.3E-06 51.1 7.9 73 14-86 48-124 (127)
124 3b1l_X E3 ubiquitin-protein li 94.4 0.0026 9E-08 51.9 0.0 38 105-142 8-46 (76)
125 3phx_B Ubiquitin-like protein 95.2 0.00046 1.6E-08 57.1 -5.2 38 105-142 12-50 (79)
126 2kjr_A CG11242; UBL, ubiquitin 95.0 0.0015 5.3E-08 57.6 -2.8 35 108-142 28-63 (95)
127 4b6w_A Tubulin-specific chaper 95.0 0.0026 9E-08 55.0 -1.3 35 108-142 15-50 (86)
128 4dwf_A HLA-B-associated transc 94.9 0.00057 2E-08 58.0 -5.5 38 105-142 13-51 (90)
129 3u5e_m 60S ribosomal protein L 94.9 0.0046 1.6E-07 56.6 0.0 38 105-142 8-46 (128)
130 2daj_A KIAA0977 protein, COBL- 94.9 0.073 2.5E-06 47.1 7.4 68 14-81 6-76 (91)
131 2kk8_A Uncharacterized protein 94.8 0.00063 2.1E-08 58.2 -5.5 38 105-142 18-56 (84)
132 2kj6_A Tubulin folding cofacto 94.7 0.002 6.7E-08 57.2 -2.8 35 108-142 27-62 (97)
133 3dbh_I NEDD8; cell cycle, acti 94.7 0.0012 4E-08 55.4 -4.2 38 105-142 20-58 (88)
134 4ajy_B Transcription elongatio 94.7 0.001 3.5E-08 61.6 -4.9 34 109-142 13-47 (118)
135 2fnj_B Transcription elongatio 94.7 0.001 3.6E-08 61.5 -4.9 34 109-142 13-47 (118)
136 3ivf_A Talin-1; FERM domain, c 94.6 0.059 2E-06 56.9 7.6 108 18-132 3-121 (371)
137 3u5c_f 40S ribosomal protein S 94.6 0.006 2.1E-07 58.2 0.0 38 105-142 8-46 (152)
138 4e71_A Plexin-B2, MM1; transme 94.6 0.16 5.5E-06 46.7 9.3 75 16-90 9-110 (111)
139 2dzm_A FAS-associated factor 1 94.5 0.0016 5.4E-08 58.3 -4.1 37 105-141 16-53 (100)
140 2r2o_A Plexin-B1; effector dom 94.4 0.13 4.4E-06 48.9 8.5 78 15-92 21-130 (138)
141 3v6c_B Ubiquitin; structural g 94.3 0.0014 4.9E-08 56.0 -4.5 43 100-142 18-63 (91)
142 3m62_B UV excision repair prot 94.3 0.0023 7.8E-08 56.9 -3.4 38 105-142 9-47 (106)
143 4fbj_B NEDD8; effector-HOST ta 94.3 0.0013 4.3E-08 56.4 -5.0 38 105-142 8-46 (88)
144 1wyw_B Ubiquitin-like protein 94.2 0.0033 1.1E-07 54.9 -2.6 38 105-142 29-67 (97)
145 1v5t_A 8430435I17RIK protein; 93.9 0.0028 9.5E-08 54.6 -3.6 41 100-140 8-51 (90)
146 1wh3_A 59 kDa 2'-5'-oligoadeny 93.9 0.0021 7.1E-08 54.0 -4.4 38 105-142 15-53 (87)
147 1wgh_A Ubiquitin-like 3, HCG-1 93.7 0.0038 1.3E-07 57.4 -3.2 39 105-143 24-71 (116)
148 4a20_A Ubiquitin-like protein 93.6 0.0032 1.1E-07 56.0 -3.9 38 105-142 27-68 (98)
149 2uyz_B Small ubiquitin-related 93.4 0.0024 8.2E-08 52.8 -4.7 38 105-142 11-49 (79)
150 2hj8_A Interferon-induced 17 k 93.4 0.0025 8.6E-08 54.4 -4.7 37 106-142 13-50 (88)
151 2l7r_A Ubiquitin-like protein 93.3 0.0021 7.3E-08 55.6 -5.4 43 100-142 20-63 (93)
152 2faz_A Ubiquitin-like containi 93.2 0.0023 8E-08 52.6 -5.1 38 105-142 10-50 (78)
153 1wgd_A Homocysteine-responsive 93.1 0.0052 1.8E-07 52.8 -3.2 34 109-142 21-57 (93)
154 1wy8_A NP95-like ring finger p 93.1 0.0038 1.3E-07 52.7 -4.0 38 105-142 15-55 (89)
155 1wgg_A Ubiquitin carboxyl-term 93.1 0.0028 9.6E-08 55.5 -5.0 35 107-141 16-52 (96)
156 3jyu_A Ubiquitin carboxyl-term 93.0 0.44 1.5E-05 47.9 10.1 76 19-94 140-224 (231)
157 4a3p_A Ubiquitin carboxyl-term 93.0 0.44 1.5E-05 47.4 10.0 76 19-94 128-212 (217)
158 3mtn_B UBA80, ubcep1, ubiquiti 93.0 0.0054 1.8E-07 50.7 -3.2 38 105-142 11-49 (85)
159 4dbg_A Ranbp-type and C3HC4-ty 92.9 0.0034 1.2E-07 57.0 -4.9 35 108-142 37-72 (105)
160 4hcn_B Polyubiquitin, ubiquiti 92.8 0.0034 1.1E-07 54.7 -4.8 38 105-142 30-68 (98)
161 1sif_A Ubiquitin; hydrophobic 92.8 0.0032 1.1E-07 53.8 -4.9 43 100-142 10-55 (88)
162 2kdb_A Homocysteine-responsive 92.6 0.0056 1.9E-07 54.4 -3.7 34 109-142 37-73 (99)
163 3n3k_B Ubiquitin; hydrolase, p 92.5 0.0046 1.6E-07 51.3 -4.2 38 105-142 11-49 (85)
164 2gow_A HCG-1 protein, ubiquiti 92.5 0.0076 2.6E-07 55.9 -3.1 38 105-142 25-71 (125)
165 1ttn_A DC-UBP, dendritic cell- 92.5 0.0046 1.6E-07 54.7 -4.5 38 105-142 31-69 (106)
166 2kan_A Uncharacterized protein 92.4 0.0043 1.5E-07 54.1 -4.7 34 109-142 26-60 (94)
167 1se9_A Ubiquitin family; ubiqu 92.4 0.0097 3.3E-07 55.6 -2.6 38 105-142 24-70 (126)
168 2dzi_A Ubiquitin-like protein 92.4 0.0053 1.8E-07 50.5 -4.0 38 105-142 15-53 (81)
169 3k9o_B Ubiquitin, UBB+1; E2-25 92.3 0.0039 1.3E-07 53.3 -5.0 38 105-142 9-47 (96)
170 1uel_A HHR23B, UV excision rep 92.2 0.0051 1.8E-07 53.2 -4.5 38 105-142 8-49 (95)
171 2wyq_A HHR23A, UV excision rep 92.0 0.0051 1.8E-07 51.2 -4.5 38 105-142 13-54 (85)
172 1v86_A DNA segment, CHR 7, way 92.0 0.0055 1.9E-07 53.4 -4.6 36 106-141 25-61 (95)
173 1v5o_A 1700011N24RIK protein; 92.0 0.0088 3E-07 52.6 -3.3 36 107-142 21-57 (102)
174 1ndd_A NEDD8, protein (ubiquit 91.9 0.0042 1.5E-07 50.1 -5.0 38 105-142 8-46 (76)
175 3l0w_B Monoubiquitinated proli 91.6 0.0061 2.1E-07 58.7 -5.1 38 105-142 8-46 (169)
176 1v6e_A Cytoskeleton-associated 91.2 0.012 4E-07 51.1 -3.3 34 109-142 20-54 (95)
177 2ojr_A Ubiquitin; lanthide-bin 91.1 0.003 1E-07 56.4 -7.3 37 106-142 44-81 (111)
178 4e74_A Plexin-A4; RBD, structu 91.0 0.58 2E-05 43.4 7.5 76 16-91 11-115 (117)
179 1yx5_B Ubiquitin; proteasome, 90.5 0.01 3.5E-07 51.3 -4.3 38 105-142 8-46 (98)
180 3h6n_A Plexin-D1; structural g 90.4 1 3.4E-05 42.4 8.7 74 18-91 4-105 (127)
181 1we7_A SF3A1 protein; structur 90.3 0.013 4.5E-07 52.5 -4.0 57 83-142 24-81 (115)
182 1ryj_A Unknown; beta/alpha pro 90.1 2.2 7.7E-05 35.1 9.7 64 18-91 4-67 (70)
183 2dzj_A Synaptic glycoprotein S 90.0 0.025 8.6E-07 48.9 -2.2 38 105-142 18-60 (88)
184 3vdz_A Ubiquitin-40S ribosomal 90.0 0.0084 2.9E-07 53.7 -5.4 38 105-142 43-81 (111)
185 1wx8_A Riken cDNA 4931431F19; 89.8 0.015 5.2E-07 49.9 -3.8 36 107-142 26-62 (96)
186 3q3f_A Ribonuclease/ubiquitin 89.8 0.026 8.9E-07 55.7 -2.7 38 105-142 113-151 (189)
187 1vjk_A Molybdopterin convertin 89.7 2.1 7.2E-05 37.2 9.7 69 17-90 8-94 (98)
188 1oey_A P67-PHOX, neutrophil cy 89.6 1.6 5.6E-05 38.1 8.8 72 16-90 3-81 (83)
189 2klc_A Ubiquilin-1; ubiquitin- 89.4 0.022 7.5E-07 50.1 -3.2 36 107-142 34-70 (101)
190 3a9j_A Ubiquitin; protein comp 89.3 0.011 3.6E-07 47.7 -4.9 37 106-142 9-46 (76)
191 1we6_A Splicing factor, putati 89.3 0.024 8.2E-07 50.4 -3.0 52 81-142 24-77 (111)
192 2kd0_A LRR repeats and ubiquit 89.2 0.012 4.2E-07 50.1 -4.8 37 106-142 20-57 (85)
193 1wxv_A BAG-family molecular ch 89.1 0.019 6.4E-07 49.1 -3.7 36 107-142 16-57 (92)
194 2bwf_A Ubiquitin-like protein 88.7 0.013 4.6E-07 47.6 -4.7 36 107-142 13-49 (77)
195 1v2y_A 3300001G02RIK protein; 88.6 0.007 2.4E-07 54.7 -7.0 38 100-137 8-48 (105)
196 1t0y_A Tubulin folding cofacto 88.6 0.038 1.3E-06 50.3 -2.3 34 109-142 19-53 (122)
197 2kdi_A Ubiquitin, vacuolar pro 88.4 0.021 7.1E-07 51.5 -4.1 38 105-142 17-55 (114)
198 1j8c_A Ubiquitin-like protein 88.2 0.03 1E-06 51.4 -3.2 36 107-142 41-77 (125)
199 1wf9_A NPL4 family protein; be 87.8 0.029 9.8E-07 49.9 -3.6 36 106-142 16-53 (107)
200 1wx7_A Ubiquilin 3; ubiquitin- 87.5 0.039 1.3E-06 48.6 -2.9 33 110-142 29-62 (106)
201 1yqb_A Ubiquilin 3; structural 87.3 0.042 1.5E-06 48.3 -2.7 33 110-142 34-67 (100)
202 1vd2_A Protein kinase C, IOTA 87.3 2.2 7.5E-05 37.7 8.2 52 14-66 2-54 (89)
203 2l32_A Small archaeal modifier 87.1 1.3 4.6E-05 37.3 6.5 63 19-91 1-63 (74)
204 3kuz_A Plexin-C1; structural g 86.6 2.8 9.5E-05 39.4 8.9 73 17-89 18-125 (126)
205 4efo_A Serine/threonine-protei 85.8 0.027 9.2E-07 50.3 -4.8 39 105-143 21-60 (94)
206 1tyg_B YJBS; alpha beta barrel 85.6 1.8 6E-05 37.9 6.7 71 12-92 14-85 (87)
207 1wgk_A Riken cDNA 2900073H19 p 85.1 1.4 4.9E-05 40.0 6.1 76 17-94 10-108 (114)
208 3rpf_C Molybdopterin convertin 84.8 2.5 8.7E-05 34.8 7.0 69 19-92 1-72 (74)
209 1wia_A Hypothetical ubiquitin- 84.0 0.054 1.8E-06 46.5 -3.7 36 105-142 15-50 (95)
210 3po0_A Small archaeal modifier 83.8 7.3 0.00025 32.8 9.6 59 29-92 18-87 (89)
211 1wgr_A Growth factor receptor- 83.0 5.7 0.00019 35.8 8.9 80 14-93 5-95 (100)
212 1x1m_A Ubiquitin-like protein 82.7 0.078 2.7E-06 47.0 -3.2 29 114-142 40-73 (107)
213 3ai5_A Yeast enhanced green fl 82.7 0.071 2.4E-06 56.3 -4.1 44 99-142 233-279 (307)
214 3hm6_X Plexin-B1; structural g 81.9 3.4 0.00012 47.6 8.7 79 15-93 254-364 (644)
215 1oqy_A HHR23A, UV excision rep 80.2 0.1 3.5E-06 56.3 -4.1 38 105-142 15-56 (368)
216 1ip9_A BEM1 protein; ubiquitin 79.6 7.1 0.00024 34.4 8.1 67 17-87 11-82 (85)
217 1ef1_A Moesin; membrane, FERM 79.2 6.7 0.00023 39.6 9.1 72 18-90 1-78 (294)
218 3qij_A Protein 4.1; cytoskelet 79.1 4.2 0.00014 41.8 7.7 81 10-90 9-95 (296)
219 2juo_A GA-binding protein alph 78.3 4 0.00014 36.1 6.1 62 31-92 5-66 (89)
220 2kzr_A Ubiquitin thioesterase 78.0 0.094 3.2E-06 44.5 -4.2 36 105-141 8-45 (86)
221 1h4r_A Merlin; FERM, neurofibr 77.2 6.5 0.00022 40.2 8.4 75 16-91 20-99 (314)
222 2kmc_A Fermitin family homolog 76.8 12 0.0004 34.0 8.7 72 19-90 20-99 (102)
223 3shq_A UBLCP1; phosphatase, hy 76.3 0.15 5.3E-06 53.7 -4.0 36 106-141 13-49 (320)
224 3dwg_C 9.5 kDa culture filtrat 76.1 9.1 0.00031 32.6 7.7 73 19-93 1-92 (93)
225 3ivf_A Talin-1; FERM domain, c 75.5 9.9 0.00034 39.9 9.4 74 17-90 84-167 (371)
226 2qjl_A URM1, ubiquitin-related 74.8 19 0.00065 31.2 9.6 74 18-91 1-96 (99)
227 3ig3_A Plxna3 protein; plexin 73.3 9.3 0.00032 44.0 9.0 78 15-92 230-336 (627)
228 1fm0_D Molybdopterin convertin 73.0 9.4 0.00032 31.3 6.9 57 29-91 17-78 (81)
229 2kl0_A Putative thiamin biosyn 72.4 8.7 0.0003 32.2 6.5 60 27-94 6-65 (73)
230 2kvr_A Ubiquitin carboxyl-term 71.7 3.2 0.00011 38.6 4.0 33 31-63 58-90 (130)
231 2i1j_A Moesin; FERM, coiled-co 71.6 9.9 0.00034 43.1 8.8 74 17-91 3-82 (575)
232 2l52_A Methanosarcina acetivor 71.3 15 0.00051 32.0 8.1 69 18-90 3-95 (99)
233 2k9x_A Tburm1, uncharacterized 69.8 1.5 5.3E-05 39.7 1.4 75 17-93 3-101 (110)
234 1f0z_A THis protein; ubiquitin 68.9 10 0.00035 30.5 6.0 58 27-91 6-63 (66)
235 1wgy_A RAP guanine nucleotide 65.9 20 0.00068 32.6 7.8 75 17-91 8-87 (104)
236 2q5w_D Molybdopterin convertin 65.6 11 0.00036 30.8 5.6 57 29-91 16-74 (77)
237 2k5p_A THis protein, thiamine- 62.8 14 0.00047 31.3 5.9 66 19-94 1-69 (78)
238 2io1_B Small ubiquitin-related 61.5 0.44 1.5E-05 41.8 -3.7 40 105-144 15-55 (94)
239 2cu3_A Unknown function protei 59.9 17 0.00057 29.2 5.6 58 26-91 4-61 (64)
240 4eut_A Serine/threonine-protei 57.6 31 0.0011 35.6 8.8 58 22-79 314-374 (396)
241 2daf_A FLJ35834 protein; hypot 55.6 0.53 1.8E-05 43.7 -4.4 36 107-142 26-62 (118)
242 2kmm_A Guanosine-3',5'-BIS(dip 52.7 19 0.00066 28.8 5.0 63 19-90 1-63 (73)
243 3qa8_A MGC80376 protein; kinas 50.4 15 0.0005 42.5 5.3 51 27-77 320-371 (676)
244 1q1o_A Cell division control p 48.7 24 0.00081 31.8 5.2 48 18-65 5-64 (98)
245 1wjn_A Tubulin-folding protein 45.7 6 0.00021 34.0 0.9 37 106-142 21-58 (97)
246 1wm3_A Ubiquitin-like protein 45.5 0.9 3.1E-05 37.5 -4.2 38 105-142 9-47 (72)
247 2ylm_A Ubiquitin carboxyl-term 45.3 28 0.00097 38.9 6.4 77 15-91 127-218 (530)
248 2g1e_A Hypothetical protein TA 44.2 67 0.0023 26.6 7.2 58 33-91 19-87 (90)
249 2lgx_A Fermitin family homolog 43.7 8.8 0.0003 35.3 1.7 77 13-90 19-102 (112)
250 2ylm_A Ubiquitin carboxyl-term 42.5 16 0.00056 40.8 4.0 31 32-62 39-69 (530)
251 3onh_A Ubiquitin-activating en 42.5 38 0.0013 31.8 5.7 52 37-89 18-78 (127)
252 2dhz_A RAP guanine nucleotide 42.2 58 0.002 30.3 6.9 74 17-90 8-92 (120)
253 2io0_B Small ubiquitin-related 42.2 1.7 5.8E-05 37.9 -3.1 40 105-144 13-53 (91)
254 2c7h_A RBBP6, retinoblastoma-b 41.8 55 0.0019 28.8 6.3 46 16-61 4-51 (86)
255 1f2r_I Inhibitor of caspase-ac 41.2 1.3E+02 0.0043 27.3 8.7 73 14-91 14-90 (100)
256 1y8x_B Ubiquitin-activating en 40.7 30 0.001 30.9 4.6 59 30-88 6-82 (98)
257 3a4r_A Nfatc2-interacting prot 40.0 0.99 3.4E-05 38.1 -4.9 38 105-142 15-54 (79)
258 3au4_A Myosin-X; protein-prote 38.7 56 0.0019 36.2 7.5 47 17-63 215-263 (555)
259 2hj1_A Hypothetical protein; s 34.9 73 0.0025 28.2 6.1 71 17-92 11-87 (97)
260 2k8h_A Small ubiquitin protein 34.7 3.6 0.00012 37.3 -2.3 38 105-142 34-72 (110)
261 1rws_A Hypothetical protein PF 34.1 14 0.00047 30.8 1.3 49 33-90 25-73 (77)
262 3ge3_C Toluene-4-monooxygenase 33.9 2.4E+02 0.0081 24.9 9.0 71 19-89 4-82 (84)
263 2d07_B Ubiquitin-like protein 32.8 2.3 8E-05 37.0 -3.8 40 106-145 26-66 (93)
264 2eel_A Cell death activator CI 32.5 97 0.0033 27.5 6.5 67 19-91 10-79 (91)
265 2inc_C TOUB protein; DIIRON, 4 32.2 1.5E+02 0.005 26.1 7.4 60 31-90 15-82 (83)
266 1wz0_A Ubiquitin-like protein 30.7 4.5 0.00016 36.1 -2.4 40 105-144 32-72 (104)
267 1wmh_B Partitioning defective- 28.8 2.2E+02 0.0074 25.0 8.0 73 16-90 4-84 (86)
268 4gmv_A RAS-associated and plec 28.6 1.8E+02 0.0061 30.2 8.8 72 17-88 30-112 (281)
269 2eke_C Ubiquitin-like protein 27.5 5.5 0.00019 35.9 -2.4 40 106-145 39-79 (106)
270 3hk0_A Growth factor receptor- 23.4 78 0.0027 32.4 4.9 58 19-76 9-73 (256)
271 3pvl_A Myosin VIIA isoform 1; 23.4 98 0.0033 35.6 6.2 40 17-56 262-301 (655)
272 2v1y_A Phosphatidylinositol-4, 22.7 1.3E+02 0.0045 27.3 5.7 75 15-90 16-104 (108)
273 1j0g_A Hypothetical protein 18 22.4 2.5E+02 0.0084 24.8 7.0 63 31-93 26-89 (92)
274 3tca_A Amyloid beta A4 precurs 21.8 1.6E+02 0.0056 28.9 6.8 56 18-73 34-96 (291)
275 3r8s_T 50S ribosomal protein L 21.5 1.5E+02 0.0051 26.2 5.6 39 29-67 28-67 (93)
276 3w1s_C Ubiquitin-like protein 21.4 3.6E+02 0.012 23.6 8.1 71 15-89 5-84 (91)
277 2beq_A E2 glycoprotein; viral 20.8 1.4E+02 0.0049 22.7 4.5 28 277-305 11-38 (38)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.87 E-value=5e-23 Score=196.25 Aligned_cols=126 Identities=30% Similarity=0.448 Sum_probs=114.0
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||+++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 92 PVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 92 pggp~ss~~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+ ++.+++ .+|+.+.+.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 94 ~g-----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 94 RG-----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CC-----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cc-----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 76 455554 678999999999999999999999 89999999999974
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.86 E-value=9.1e-23 Score=191.26 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=111.3
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCChhhhccccccCCCEEEEeeec-CCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F-kGKvLkDdkTLsdYGIqdGSTLhLVlRl-pgg 94 (730)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 499999999999999999999999999999999999999999999 9 7999999999999999999999999984 33
Q ss_pred CCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 95 p~ss~~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+++ .+|+.+.+.|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 566665 678999999999999999999999 89999999999874
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=4.8e-21 Score=176.05 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=110.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp~ss 98 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+++|++|+|++|++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 99 ~~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+++ ..|+.+.+.|.+++||..||.+|+ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 355555 578888999999999999999999 89999999999874
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=144.03 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+.+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=3.8e-18 Score=146.19 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
+.+|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||+++.+..+
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 899999999987754
Q ss_pred C
Q 004798 96 S 96 (730)
Q Consensus 96 ~ 96 (730)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.6e-18 Score=150.75 Aligned_cols=94 Identities=32% Similarity=0.420 Sum_probs=74.9
Q ss_pred CCCCCCCCCCC----CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhcc
Q 004798 1 MESRGTVKIPG----AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSA 76 (730)
Q Consensus 1 M~~~s~~e~s~----se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsd 76 (730)
|++.+.....+ ..+.+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ 80 (98)
T 4hcn_B 1 MGSSHHHHHHSSGENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 80 (98)
T ss_dssp ---------------------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGG
T ss_pred CCccccccCCCCCCCCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHH
Confidence 55554444322 33456779999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEeeecCCC
Q 004798 77 YHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 77 YGIqdGSTLhLVlRlpgg 94 (730)
|+|++|++|||++|+.++
T Consensus 81 ~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 81 YNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp GTCCTTEEEEEECBCSCC
T ss_pred CCCCCCCEEEEEEecCCC
Confidence 999999999999998763
No 7
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=4.8e-18 Score=143.91 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=77.8
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
..++..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004798 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 87 GG 88 (88)
T 3dbh_I 87 GG 88 (88)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.1e-17 Score=144.25 Aligned_cols=82 Identities=32% Similarity=0.496 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 11 ~se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
........|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|
T Consensus 10 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 10 SGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp -CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 004798 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
++
T Consensus 90 lr 91 (91)
T 3v6c_B 90 LR 91 (91)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.73 E-value=8.4e-18 Score=149.48 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
....+|+|+||++.|+++.++|++++||.+||++|+++.|+|+++|||+|.||+|+|+.+|++|+|++|++|||+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999974
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.72 E-value=1.1e-17 Score=144.13 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=73.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998864
No 11
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=3.3e-17 Score=139.86 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCCcEEEEEEecCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 15 SETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 15 s~stMqItVKtL~G-Kt~tL-eVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
....|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 34679999999999 79999 59999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004798 93 VPSS 96 (730)
Q Consensus 93 ggp~ 96 (730)
++.+
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 12
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=144.15 Aligned_cols=86 Identities=29% Similarity=0.425 Sum_probs=79.1
Q ss_pred CCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEe
Q 004798 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 9 ~s~se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
......+..+|+|+||+. |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+
T Consensus 8 ~~~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 8 VSGREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp CCCSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred ccCCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEE
Confidence 333444668899999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 004798 89 VRQPVPS 95 (730)
Q Consensus 89 lRlpggp 95 (730)
+++.+++
T Consensus 87 ~~~~~g~ 93 (96)
T 1wx8_A 87 VRSHSGP 93 (96)
T ss_dssp BCCSSCS
T ss_pred EeCCCCC
Confidence 9988754
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.7e-17 Score=139.54 Aligned_cols=81 Identities=27% Similarity=0.391 Sum_probs=77.2
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.++.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.+
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 004798 94 P 94 (730)
Q Consensus 94 g 94 (730)
+
T Consensus 83 G 83 (87)
T 1wh3_A 83 G 83 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=147.42 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||+++.
T Consensus 17 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 17 PPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp ----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 33455679999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004798 92 PVPS 95 (730)
Q Consensus 92 pggp 95 (730)
+..+
T Consensus 97 ~~~~ 100 (106)
T 1ttn_A 97 PVQN 100 (106)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 15
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=2.6e-17 Score=134.76 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=72.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763
No 16
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.9e-17 Score=148.85 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=76.4
Q ss_pred CCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEe
Q 004798 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 9 ~s~se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.-.+++...+|+|+||++.|+++.|+|++++||.+||++|++++|+|+++|||+|.||+|+|+++|++|+|+++++|||+
T Consensus 19 ~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 19 PRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred cccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred e
Q 004798 89 V 89 (730)
Q Consensus 89 l 89 (730)
.
T Consensus 99 ~ 99 (100)
T 1uh6_A 99 Y 99 (100)
T ss_dssp C
T ss_pred e
Confidence 5
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3e-17 Score=137.68 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=1.8e-17 Score=139.26 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=73.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998753
No 19
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=140.10 Aligned_cols=76 Identities=45% Similarity=0.673 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 345679999999999999999999999999999999999999999999999999999999999999 8999999986
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=2.7e-17 Score=137.49 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=74.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|+|+||+++|+++.++|++++||.+||++|+++.++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998763
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=135.54 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=74.7
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.+...|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999863
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=140.83 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
+..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++
T Consensus 2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999998775
No 23
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=5e-17 Score=137.09 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaek---tGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+..|+|+||+++|+++.++|++++||.+||++|+++ +++|+++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 467999999999999999999999999999999998 88999999999999999999999999999999999999876
Q ss_pred C
Q 004798 93 V 93 (730)
Q Consensus 93 g 93 (730)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.8e-17 Score=143.54 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
..+...|+|+||+++|+++.|+|++++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++.
T Consensus 16 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 16 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp ---CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004798 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 96 GG 97 (97)
T 1wyw_B 96 GG 97 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=5.7e-17 Score=132.75 Aligned_cols=76 Identities=37% Similarity=0.546 Sum_probs=73.5
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998763
No 26
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.8e-17 Score=141.06 Aligned_cols=81 Identities=30% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCChhhhccc--cccCCCEEEEee
Q 004798 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (730)
Q Consensus 16 ~stMqItVKtL~GK--t~tLeVdpsdTV~dLKekIaekt--GIPpeqQRLIFkGKvLkDdkTLsdY--GIqdGSTLhLVl 89 (730)
...|+|+||+++++ ++.++|++++||.+||++|++++ ++++++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999999988 67777889999999999999999 9999999999999999999999999 999999999999
Q ss_pred ecCCCCC
Q 004798 90 RQPVPSS 96 (730)
Q Consensus 90 Rlpggp~ 96 (730)
++.++++
T Consensus 85 ~~~gg~~ 91 (93)
T 1wgd_A 85 NVKSGPS 91 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887643
No 27
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.4e-16 Score=141.55 Aligned_cols=82 Identities=28% Similarity=0.412 Sum_probs=76.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.+.+|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 467899999999886 7999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 004798 95 SSS 97 (730)
Q Consensus 95 p~s 97 (730)
+..
T Consensus 93 ~~~ 95 (106)
T 1wx7_A 93 AMG 95 (106)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 28
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.69 E-value=5.5e-17 Score=140.24 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||++++.++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998763
No 29
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.5e-17 Score=135.07 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEecCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtL~GKt~-tLe-VdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.|+|+||+++|+++ .++ |++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 899 9999999999999999999999999999999999999999999999999999999863
No 30
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.3e-17 Score=147.40 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
+|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999977643
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=6.7e-17 Score=139.12 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCChhhhccccccCCCEEEEeee
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKv-LkDdkTLsdYGIqdGSTLhLVlR 90 (730)
...|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.9e-16 Score=138.28 Aligned_cols=77 Identities=32% Similarity=0.559 Sum_probs=73.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaek---tGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999999876543
No 33
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=141.17 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++|+
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 44556679999999 7999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004798 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 91 ~GG 93 (93)
T 2l7r_A 91 LGG 93 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.4e-16 Score=139.79 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=76.0
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCh-hhhccccccCCCEEEEeeecC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlRlp 92 (730)
.....|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|+|+++++
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 345669999999887 899999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCC
Q 004798 93 VPS 95 (730)
Q Consensus 93 ggp 95 (730)
+++
T Consensus 90 gg~ 92 (94)
T 2kan_A 90 NRA 92 (94)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 35
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.7e-17 Score=147.52 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=91.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp~ 96 (730)
..++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCC-----CCCCCcccccccCCchhc
Q 004798 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (730)
Q Consensus 97 ss~~sI~v-----~tGrtitl~V~pSdTI~~ 122 (730)
.+++ .+|++++++|+++++|+.
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 3344 257888899999888764
No 36
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=1.5e-16 Score=143.27 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|++++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999998763
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.4e-16 Score=137.24 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998874
No 38
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.4e-16 Score=142.00 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.3
Q ss_pred CCCcEEEEEEecCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCChhhhccccc-cCCCEEEEeee
Q 004798 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tL--eVdpsdTV~dLKekI-aektGIPpeqQRLIFkGKvLkDdkTLsdYGI-qdGSTLhLVlR 90 (730)
....|+|+||+++|++|.+ +|++++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 4567999999999998777 566999999999999 8888999999999999999999999999999 99999999998
Q ss_pred cC
Q 004798 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 39
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.3e-16 Score=136.04 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=74.8
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCh-hhhccccccCCCEEEEeeec
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlRl 91 (730)
.+++..|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 2 SSGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 3556789999999999999999999999999999999987 8999999999999999 99999999999999999998
Q ss_pred CCCCC
Q 004798 92 PVPSS 96 (730)
Q Consensus 92 pggp~ 96 (730)
+...+
T Consensus 79 ~~~~~ 83 (95)
T 1wia_A 79 PGAAV 83 (95)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 40
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.8e-17 Score=140.72 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.1
Q ss_pred cEEEEEEecCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCChhhhccccc-cCCCEEEEeeec
Q 004798 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVd--psdTV~dLKekI-aektGIPpeqQRLIFkGKvLkDdkTLsdYGI-qdGSTLhLVlRl 91 (730)
+|+|+||+++|+++.|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4999999999999998766 999999999999 9999999999999999999999999999999 799999999875
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.9e-16 Score=139.12 Aligned_cols=82 Identities=29% Similarity=0.426 Sum_probs=76.3
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...+.+|+|+||+++|+ +.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 34557799999999886 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004798 93 VPS 95 (730)
Q Consensus 93 ggp 95 (730)
+++
T Consensus 96 ~~p 98 (100)
T 1yqb_A 96 HRA 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 42
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.65 E-value=2.9e-16 Score=129.67 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=70.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 3 M~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 459999999 99999999999999999999999999999999999999999999999999999999999998754
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.7e-16 Score=138.39 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=75.2
Q ss_pred CcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCh-hhhccccccCCCEEEEeeec
Q 004798 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 17 stMqItVKtL~G----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlRl 91 (730)
..|+|+||+..+ +++.++|++++||.+||++|++++++|+++|||+|+||.|+|+ ++|++|+|++|++|||+++.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 569999999754 7999999999999999999999999999999999999999988 79999999999999999998
Q ss_pred CCCCCCC
Q 004798 92 PVPSSSD 98 (730)
Q Consensus 92 pggp~ss 98 (730)
++++..+
T Consensus 86 ~gg~~~~ 92 (102)
T 1v5o_A 86 NVGLRTP 92 (102)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8765543
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=137.40 Aligned_cols=80 Identities=28% Similarity=0.406 Sum_probs=74.3
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.....|+|+||+. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++++.
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3457799999998 899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 004798 94 P 94 (730)
Q Consensus 94 g 94 (730)
.
T Consensus 100 ~ 100 (101)
T 2klc_A 100 R 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.7e-16 Score=142.15 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-Chhhhccccc
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYHV 79 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp---------------eqQRLIFkGKvLk-DdkTLsdYGI 79 (730)
...|+|+||+++|+++.|+|++++||.+||++|++++++|+ ++|+|+|+||.|+ |+++|++|+|
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 35599999999999999999999999999999999999887 4679999999996 5699999999
Q ss_pred cCCCEEEEeeecCCC
Q 004798 80 EDGHTLHMVVRQPVP 94 (730)
Q Consensus 80 qdGSTLhLVlRlpgg 94 (730)
++|++|||++++.+.
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999998775
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=9.2e-16 Score=141.52 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
..+|+|+||++ ++++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999999 99999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 004798 96 SS 97 (730)
Q Consensus 96 ~s 97 (730)
..
T Consensus 109 ~~ 110 (125)
T 1j8c_A 109 SS 110 (125)
T ss_dssp --
T ss_pred CC
Confidence 43
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=5.7e-16 Score=135.28 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998864
No 48
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.44 E-value=1.6e-17 Score=137.42 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999765
No 49
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.3e-15 Score=139.83 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCChhhhccccccCC
Q 004798 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (730)
Q Consensus 11 ~se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIae------ktGI--PpeqQRLIFkGKvLkDdkTLsdYGIqdG 82 (730)
....+...|+|+||++.|++++|+|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|+.+
T Consensus 9 ~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 9 SSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFG 88 (116)
T ss_dssp CCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSS
T ss_pred cCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 4556777899999999999999999999999999999999 5565 6899999999999999999999999766
Q ss_pred --CEEEEeeecCCC
Q 004798 83 --HTLHMVVRQPVP 94 (730)
Q Consensus 83 --STLhLVlRlpgg 94 (730)
.+|||++|....
T Consensus 89 ~~~tlhLvlr~~~~ 102 (116)
T 1wgh_A 89 KTTVMHLVARETLP 102 (116)
T ss_dssp CEEEEEEEECSSCS
T ss_pred CceEEEEEccCCCC
Confidence 689999987653
No 50
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=137.03 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998763
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=9.6e-16 Score=143.60 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|+.++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999875
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.61 E-value=1.8e-15 Score=145.98 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=73.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 53
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.8e-15 Score=132.83 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 10 s~se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
......++.|+|+||. .+++|.|+|++++||.+||++|++++++|+++|||+|+||.| |+.+|++|+|+++++|||+.
T Consensus 9 ~~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 9 AGGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp CCCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred CCCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence 3445566789999996 689999999999999999999999999999999999999999 55699999999999999998
Q ss_pred ecCC
Q 004798 90 RQPV 93 (730)
Q Consensus 90 Rlpg 93 (730)
+...
T Consensus 87 ~~~~ 90 (95)
T 1v86_A 87 STIS 90 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7644
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=1.4e-15 Score=136.46 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=75.3
Q ss_pred CCcEEEEEEec---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 16 ETTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~stMqItVKtL---~GKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
...|+|+|+++ +|+++.++|++ ++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35699999999 89999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 004798 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 55
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.6e-15 Score=136.37 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=67.3
Q ss_pred EEEEEEecC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~----GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|.|+..+ ++++.|+|++++||.+||++|++++|+|+++|||||+||+|+|++||++|+|++|++| +++++++.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 356666666 7799999999999999999999999999999999999999999999999999999999 66666654
No 56
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.6e-15 Score=134.22 Aligned_cols=81 Identities=27% Similarity=0.329 Sum_probs=73.2
Q ss_pred CCCCcEEEEEEecCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCChhhhcccc
Q 004798 14 SSETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYH 78 (730)
Q Consensus 14 ~s~stMqItVKtL~G---Kt~tLeVd--------p-sdTV~dLKekIaekt--GIPpeq-QRLIFkGKvLkDdkTLsdYG 78 (730)
.....|+|+||+.++ +++.|+|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|++|+
T Consensus 8 ~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 8 MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred ccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 344569999999998 89999954 4 499999999999999 999999 99999999999999999999
Q ss_pred ccCCCEEEEeeecCCC
Q 004798 79 VEDGHTLHMVVRQPVP 94 (730)
Q Consensus 79 IqdGSTLhLVlRlpgg 94 (730)
|++|++|||+++.+..
T Consensus 88 i~~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 88 IQPGSTVHVLRKSWSG 103 (107)
T ss_dssp CCTTCEEEEEESSCCS
T ss_pred CCCCCEEEEEeCCCCC
Confidence 9999999999987653
No 57
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=4.6e-15 Score=128.14 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=71.4
Q ss_pred CCCcEEEEEEecCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-hhhhccccccCCCEEEEe
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdps-----dTV~dLKekIaektGIPpeqQRLIFkGKvLkD-dkTLsdYGIqdGSTLhLV 88 (730)
...+|+|+||+ .++++.++|+++ +||.+||++|++++++|+++|||+|+||.|+| +++|++|+|++|++|||+
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 34579999999 589999999995 99999999999999999999999999999998 568999999999999999
Q ss_pred eecCC
Q 004798 89 VRQPV 93 (730)
Q Consensus 89 lRlpg 93 (730)
.+...
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 87654
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=139.12 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCChhhhccccccCCC
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIae------ktGIP--peqQRLIFkGKvLkDdkTLsdYGIqdGS 83 (730)
+....+.|+|+||+++|++++|+|++++||.+||++|++ ++++| +++|||||.||+|+|+++|++|+|++++
T Consensus 11 ~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 11 SNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 90 (125)
T ss_dssp CSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS
T ss_pred cCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 344566799999999999999999999999999999999 67874 8999999999999999999999999776
Q ss_pred --EEEEeeecCCC
Q 004798 84 --TLHMVVRQPVP 94 (730)
Q Consensus 84 --TLhLVlRlpgg 94 (730)
+|||+++...+
T Consensus 91 ~~tlhlv~r~~~~ 103 (125)
T 2gow_A 91 TTVMHLVARETLP 103 (125)
T ss_dssp EEEEEEEECSCCS
T ss_pred ceEEEEEecCCCC
Confidence 78999998753
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.58 E-value=3.2e-15 Score=129.60 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=71.9
Q ss_pred CCCcEEEEEEecCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCChhhhccccccCCCEEEEeee
Q 004798 15 SETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tL-eVdpsdTV~dLKekIaektGIPpeqQRLI---FkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.+.+|+|+||+ .|++|.| +|++++||.+||++|++++++|+++|||+ |+||.|+|+.+|++|+|++|++|+|+..
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 44679999997 7899999 99999999999999999999999999999 9999999999999999999999999876
Q ss_pred cC
Q 004798 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.57 E-value=2.3e-15 Score=138.92 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=65.0
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhcccccc-------CCCEEEEeee
Q 004798 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIq-------dGSTLhLVlR 90 (730)
|+|+|+...++ ++.|+|++++||.+||++|+.++|||+++|||+|+||.|+|+++|++|+|+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 44444444455 699999999999999999999999999999999999999999999999999 7999999999
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=7.6e-15 Score=129.34 Aligned_cols=76 Identities=21% Similarity=0.393 Sum_probs=70.9
Q ss_pred CCCcEEEEEEecCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 15 SETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 15 s~stMqItVKtL~GKt~-tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...+|+|+||+ .|++| .|+|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|++|++|+|+....
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 34679999997 68999 6999999999999999999999999999999999999999 99999999999999998754
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=134.03 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=65.9
Q ss_pred CCCCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCChhhhccc--cccCCCEEEE
Q 004798 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (730)
Q Consensus 14 ~s~stMqItVKtL~GK--t~tLeVdpsdTV~dLKekIaek-tGIP-peqQRLIFkGKvLkDdkTLsdY--GIqdGSTLhL 87 (730)
..+..|+|+||+++++ ++.|+|++++||.+||++|+++ .|+| +++|||||+||+|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456699999999998 6789999999999999999997 4666 4999999999999999999999 9999999998
Q ss_pred e
Q 004798 88 V 88 (730)
Q Consensus 88 V 88 (730)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=6.2e-15 Score=137.43 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=73.1
Q ss_pred CCCCcEEEEEEecCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCCC--CCeEEEeCCeecCChhhhccccccCC---
Q 004798 14 SSETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIA-----SVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG--- 82 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~-tLeVdpsdTV~dLKekIa-----ektGIPp--eqQRLIFkGKvLkDdkTLsdYGIqdG--- 82 (730)
..++.|+|+||+++|+++ .+++++++||.+||++|+ ++.++|+ ++|||||.||.|+|++||++|+|+++
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 345789999999999988 699999999999999995 4567887 89999999999999999999999998
Q ss_pred ---CEEEEeeecCCC
Q 004798 83 ---HTLHMVVRQPVP 94 (730)
Q Consensus 83 ---STLhLVlRlpgg 94 (730)
.|+||+++++++
T Consensus 92 ~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 92 GAVTTMHVIIQAPVT 106 (126)
T ss_dssp TCCEEEEEEECCCSS
T ss_pred CCcEEEEEEeccCCc
Confidence 789999998864
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.56 E-value=5.3e-15 Score=145.89 Aligned_cols=77 Identities=36% Similarity=0.508 Sum_probs=75.0
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||++++.++
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999885
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-15 Score=135.22 Aligned_cols=75 Identities=37% Similarity=0.669 Sum_probs=69.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 3568899998 89999999999999999999999999999999999999999999999999999999999999864
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.56 E-value=4.2e-15 Score=137.27 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=67.6
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccC-------CCEEEEeee
Q 004798 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqd-------GSTLhLVlR 90 (730)
|.|+|+...+| ++.++|++++||.+||++|++++|+|+++|||+|.||+|+|++||++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56666666556 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred c
Q 004798 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 67
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.3e-14 Score=131.22 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEEE-ecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 12 AESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 12 se~s~stMqItVK-tL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.+-.+..|.|+|+ ...++.++++++++.||.+||++|++++++|+++|||+|+||.|+|+.||.+|||++|.||||+++
T Consensus 9 ~~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 9 ESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp CCCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred hcccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 4455667889988 667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 004798 91 QPV 93 (730)
Q Consensus 91 lpg 93 (730)
...
T Consensus 89 s~~ 91 (118)
T 2daf_A 89 STN 91 (118)
T ss_dssp ESC
T ss_pred cCC
Confidence 755
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=6.2e-15 Score=140.43 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=71.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|++++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.3e-14 Score=131.10 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.3
Q ss_pred CcEEEEEEec----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEE
Q 004798 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 stMqItVKtL----------~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLh 86 (730)
..|+|+|+.. +|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688999886 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 004798 87 MVVRQPVP 94 (730)
Q Consensus 87 LVlRlpgg 94 (730)
|+++++++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999875
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=1.5e-14 Score=132.78 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=74.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.54 E-value=5.2e-16 Score=142.72 Aligned_cols=76 Identities=37% Similarity=0.553 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.54 E-value=1.9e-14 Score=130.46 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccc-cCCCEEEEeee
Q 004798 14 SSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (730)
Q Consensus 14 ~s~stMqItVKtL~G--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGI-qdGSTLhLVlR 90 (730)
+.+-.|+|+|+...+ .+++|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+||| ++|++|||++.
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 345568999999875 689999999999999999999999999999999999999999999999999 59999999986
Q ss_pred cC
Q 004798 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 100 ~~ 101 (105)
T 4dbg_A 100 SA 101 (105)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=3.2e-14 Score=122.35 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=66.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.++.+.+ +++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 11 ~~~~~~~-~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKLTV-KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEEEE-EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEEEE-EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4455554 458999999999999999999999999999999999999999999999999999999999999864
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.48 E-value=3.1e-15 Score=142.85 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+|++++|+++.|+|++++||.+||++|++.+++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 75
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=124.11 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=68.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--kGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.|.++++++.|+++.|+|++++||.+||++|++++|||+++|||+| .|+ |+|+++|++|+|++|++|||+++.-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 5777777779999999999999999999999999999999999996 466 99999999999999999999987654
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.47 E-value=3.4e-14 Score=152.42 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=71.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCChhhhccccccCCCEE-EEeee
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVR 90 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIae---ktGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTL-hLVlR 90 (730)
.+..|+|+||+++|++|.|+|++++||.+||++|++ +++|++++|||+|+||+|+|+++|++|+|++|++| ||++|
T Consensus 4 ~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp --CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 346799999999999999999999999999999999 56799999999999999999999999999999999 66666
Q ss_pred cCCC
Q 004798 91 QPVP 94 (730)
Q Consensus 91 lpgg 94 (730)
.+++
T Consensus 84 ~~~~ 87 (368)
T 1oqy_A 84 TKAG 87 (368)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5543
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=120.46 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.8
Q ss_pred CCcEEEEEEecCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEeC--CeecCChhhhccccccCCCEEEE
Q 004798 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIASV-TGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~stMqItVKtL~GKt~--tL-eVdpsdTV~dLKekIaek-tGIPpeqQRLIFk--GKvLkDdkTLsdYGIqdGSTLhL 87 (730)
-.+|+|+||++.|+++ .| +|++++||.+||++|+++ .++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4469999999988775 58 999999999999999994 8999999999976 99999999999999999999876
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3.2e-13 Score=119.57 Aligned_cols=77 Identities=19% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCCCCCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CChhhhccccccCCC
Q 004798 12 AESSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGH 83 (730)
Q Consensus 12 se~s~stMqItVKtL~GK--t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk--GK---vL-kDdkTLsdYGIqdGS 83 (730)
+-.++..|.|+|+...++ .++++|++++||.+||++|+.++|||+++|||+|. |+ .| +|+++|++|+|++|+
T Consensus 9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gs 88 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGL 88 (95)
T ss_dssp CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSC
T ss_pred ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCC
Confidence 335678899999987664 78999999999999999999999999999999998 55 34 899999999999999
Q ss_pred EEEEe
Q 004798 84 TLHMV 88 (730)
Q Consensus 84 TLhLV 88 (730)
+|||+
T Consensus 89 tihlv 93 (95)
T 2kjr_A 89 RLHVV 93 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.43 E-value=1.3e-13 Score=119.82 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.5
Q ss_pred cEEEEEEe--cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCChhhhccccccCCCEEEEe
Q 004798 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 18 tMqItVKt--L~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF-------kGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.++|.|.. .+.+.+.+++++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 35566653 34567889999999999999999999999999999997 4789999999999999999999999
Q ss_pred eecC
Q 004798 89 VRQP 92 (730)
Q Consensus 89 lRlp 92 (730)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7654
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.41 E-value=3.3e-13 Score=141.82 Aligned_cols=80 Identities=35% Similarity=0.538 Sum_probs=74.0
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.+....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|++
T Consensus 228 ~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 228 AGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp ESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred cCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999863
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=5.9e-13 Score=119.25 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=68.9
Q ss_pred CcEEEEEEecCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCChhhhcccccc
Q 004798 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIFkGK-----------v----LkDdkTLsdYGIq 80 (730)
+.|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|||+|.|+ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34999999999976 79999 999999999999999999999999999988 4 5888999999999
Q ss_pred CCCEEEEeeecCC
Q 004798 81 DGHTLHMVVRQPV 93 (730)
Q Consensus 81 dGSTLhLVlRlpg 93 (730)
+|++|||+.....
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987543
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.2e-12 Score=116.49 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe---e----cCChhhhccccccCCCEE
Q 004798 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 15 s~stMqItVKtL~G--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK---v----LkDdkTLsdYGIqdGSTL 85 (730)
.+..+.|+|+.... +.++++|++++||.+||++|+.++|||+++|||+|.|+ . ++|+++|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45668899987554 47899999999999999999999999999999999884 3 488999999999999999
Q ss_pred EEeee
Q 004798 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
||+-.
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99853
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.2e-12 Score=115.71 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
....|+|+||+.+|+.+.++|.+++++..||++++++.+++++++||+|.|+.|++++|+++|++++|++|+|++++.++
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998876
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.3e-12 Score=114.20 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=67.0
Q ss_pred CCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCChhhhccccccCCCEEEE
Q 004798 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~stMqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG---Kv----LkDdkTLsdYGIqdGSTLhL 87 (730)
...|.|+|++.... .+.++|++++||.+||++|+.++|+|+++|||+|.| +. |+|+++|++|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 44599999986543 689999999999999999999999999999999987 43 58999999999999999999
Q ss_pred eeec
Q 004798 88 VVRQ 91 (730)
Q Consensus 88 VlRl 91 (730)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=3.2e-12 Score=117.08 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.2
Q ss_pred CcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCChhhhccccccCCCEEEEe
Q 004798 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 stMqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG---Kv----LkDdkTLsdYGIqdGSTLhLV 88 (730)
..|.|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4699999986553 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred eecC
Q 004798 89 VRQP 92 (730)
Q Consensus 89 lRlp 92 (730)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 7543
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.33 E-value=1.1e-13 Score=136.88 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=0.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCCC
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++|||+++|||+|.|++|+|+.+|+ +++||||++|+.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999998764
No 87
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.9e-11 Score=110.19 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
....|+|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|++++|++|+|++++.++
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 004798 95 S 95 (730)
Q Consensus 95 p 95 (730)
.
T Consensus 101 ~ 101 (104)
T 1wz0_A 101 P 101 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.5e-11 Score=108.31 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+|++.+|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.++.|+++|++++|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998775
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.26 E-value=1.4e-11 Score=108.51 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.....|.|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+.+|++++|++|++++++.+
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998765
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.22 E-value=1.2e-11 Score=106.22 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=64.7
Q ss_pred EEEEEEecCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---ChhhhccccccCCCEEEEeeec
Q 004798 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtL~GKt~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIFk--GKvLk---DdkTLsdYGIqdGSTLhLVlRl 91 (730)
|+|+||+.+|+. .++ |++++||.+||++|++++++++++|||+|. +|.|+ |+++|++|||.+|++|||....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 789999999965 477 999999999999999999999999999987 48774 6799999999999999998664
No 91
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.22 E-value=3.7e-11 Score=109.47 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+.....|.|+|+..+|+.+.+.|.+++++..||++++++.+++++++||+|.|+.|.+++|+++|++++|++|+|++.+.
T Consensus 21 ~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 21 KEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004798 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 101 Gg 102 (110)
T 2k8h_A 101 GG 102 (110)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 92
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.22 E-value=1.1e-11 Score=130.68 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=68.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCChhhhccccccCCCEEEEeeec
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI---FkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.++|+|+||. +|++|.++|++++||.+||++|++++|||+++|||+ |+||.|+|+.+|++|+|++|++|||+-..
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 4569999997 799999999999999999999999999999999999 89999999999999999999999998654
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.21 E-value=4.5e-11 Score=100.03 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=69.3
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
.|+|+|+..+|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.++.|.++|++++|++|++++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999974
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.20 E-value=5.4e-11 Score=107.85 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=74.2
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
......|+|+|+. +|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|.++|++++|++|++++++.
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 3455779999999 999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 004798 93 V 93 (730)
Q Consensus 93 g 93 (730)
+
T Consensus 105 G 105 (106)
T 2eke_C 105 G 105 (106)
T ss_dssp -
T ss_pred c
Confidence 5
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.17 E-value=1.1e-10 Score=99.57 Aligned_cols=74 Identities=11% Similarity=0.294 Sum_probs=70.3
Q ss_pred CCCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEe
Q 004798 15 SETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~stMqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
....|+|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345699999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=9.3e-10 Score=96.38 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCCcEEEEEEe---cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------e-ec-CChhhhccccccCCC
Q 004798 15 SETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------K-VL-KDDQLLSAYHVEDGH 83 (730)
Q Consensus 15 s~stMqItVKt---L~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG------K-vL-kDdkTLsdYGIqdGS 83 (730)
....++|+|++ .+++.+.+.+.+++||.+||.+|+..+|+|+..|||.|.+ . .| +|+++|.+|+|++|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 34568888886 4678899999999999999999999999999999999873 2 24 677999999999999
Q ss_pred EEEEeeec
Q 004798 84 TLHMVVRQ 91 (730)
Q Consensus 84 TLhLVlRl 91 (730)
+|||....
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998754
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=1.6e-08 Score=93.06 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=72.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...|+|+|+..+|+.+.+.|.+++++..|++.++++.|+++..+||+|.|+.|.++.|.++|++++|++|++++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.64 E-value=7.7e-08 Score=95.98 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.+...|+|+|+. +|+.+.+.|.+++++..||+.++++.|+++.++||+|.|+.|.+++|.++|++++|++|++++.+.+
T Consensus 25 ~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 446679999975 8999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004798 94 PS 95 (730)
Q Consensus 94 gp 95 (730)
+.
T Consensus 104 g~ 105 (200)
T 3pge_A 104 GG 105 (200)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.6e-08 Score=97.35 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=74.4
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
++...|.|+|+. +|+.+.+.|.+++++..||+.++++.|+++..+||+|+|+.|.+++|.++|+++||++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 346679999975 8999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 004798 94 P 94 (730)
Q Consensus 94 g 94 (730)
+
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.34 E-value=5.9e-08 Score=97.72 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=0.6
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
..+...|.|+| ..+|+.+.+.|.+++++..||+.++++.|++++.+||+|+|+.|.+++|.++|+++||++|++++.+.
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 34456799999 77899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 004798 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 95 GG 96 (227)
T 3v7o_A 95 GG 96 (227)
T ss_dssp -C
T ss_pred CC
Confidence 86
No 101
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.19 E-value=6.3e-06 Score=73.76 Aligned_cols=77 Identities=12% Similarity=0.320 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEe
Q 004798 12 AESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 12 se~s~stMqItVKtL~GK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
..+....|.|+|+..+++ .+.+.|.+++++..|.+..+++.++++...||+|.|..|.++.|..++++++|++|.++
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 344567799999998885 88999999999999999999999999999999999999999999999999999999885
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.18 E-value=7.6e-07 Score=76.44 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=59.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CChhhhccccccCCCEEEEe
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKv---L--kDdkTLsdYGIqdGSTLhLV 88 (730)
+.|.|.||+.+| ++.|+|++++||.+||++|+++++++.+.|.|.+.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 348899999876 67788999999999999999999999988877655432 3 47789999999999999874
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.06 E-value=1.8e-05 Score=68.77 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCChhhhccccccCCCEEEEee
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
..|.+.++......+.+.|.++.+|.+|-+....+.+|+++ ..||.|.|..|..+.++.+|+++||+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 35778888888888999999999999999999999999998 99999999999999999999999999999986
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.02 E-value=1.3e-05 Score=79.75 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=75.1
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
-+...|.|+|+. +++.+.+.|..++++..||+.++++.|++++++||+|.|+.+.+++|..++.++++++|.++.++.+
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 355779999998 7888899999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004798 94 PS 95 (730)
Q Consensus 94 gp 95 (730)
+.
T Consensus 96 g~ 97 (209)
T 3uf8_A 96 GS 97 (209)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.88 E-value=1.8e-06 Score=92.81 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
..+...|.|+|+. +|+.+.+.|..++++..||+.++++.|++++.+|++|+|+.|.++.|.+++++++|++|++++.+.
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 3456679999988 688889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 004798 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 95 g~ 96 (360)
T 3ix6_A 95 GG 96 (360)
T ss_dssp --
T ss_pred ch
Confidence 74
No 106
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.82 E-value=9.7e-05 Score=66.17 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 13 e~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+....|.|+|+. +|....+.|..++....|.+..+++.|+.+...|++|.|..+.++.|-.+++++++++|.+++-.
T Consensus 16 ~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 16 PETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3455669999996 78999999999999999999999999999999999999999999999999999999999998753
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.81 E-value=2.8e-06 Score=90.72 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
....|.|+|+. +++.+.+.|..++++..||+.++++.|+++.++||+|.|+.|.+++|.+++++++|++|++++.+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 44668888887 77888899999999999999999999999999999999999999999999999999999999998775
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.64 E-value=9.2e-05 Score=66.13 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=51.2
Q ss_pred EEEEEec-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--CChhhhcccccc-CCCEEEEe
Q 004798 20 EIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHVE-DGHTLHMV 88 (730)
Q Consensus 20 qItVKtL-~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvL--kDdkTLsdYGIq-dGSTLhLV 88 (730)
-|+|=.+ .++.+.+.|++++||..||++|++++||++++|+|+|.||.| +.++.-..|--. ...-|.|+
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 3444444 467788999999999999999999999999999999999865 444555555332 23344444
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.35 E-value=0.0004 Score=60.46 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=60.9
Q ss_pred CcEEEEEEe--cCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCChhhhccccccCCCEEEE
Q 004798 17 TTIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 stMqItVKt--L~GKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
+-|.|+|.. -.++.|.|++....||.+|++.+.+.+++.. ...|+.-++..|.+++.|+||+|.+|+.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 446777775 4689999999999999999999999998655 2357778899999999999999999999876
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.30 E-value=0.00029 Score=66.08 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=58.7
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 004798 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (730)
Q Consensus 20 qItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe-------------------------------------qQRLI 62 (730)
.|+|+.++|+..++.|+.+.+|.+++..|+.+.||+.. +++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 34443
Q ss_pred eC--CeecCChhhhccccccCCCEEEEee
Q 004798 63 CR--GKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 63 Fk--GKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
.. ...|+++++|.++||.++++|.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 32 2567788999999999999976643
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.99 E-value=0.0015 Score=58.02 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=70.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCC
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
-|.|+|-..+++..++.|.+++++.++-++..+++|+.+++-.|.|++|.|+-+..+.-.||.++++|.|+.+...
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999976543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.84 E-value=0.005 Score=52.63 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---ChhhhccccccCCCEEEEee
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLk---DdkTLsdYGIqdGSTLhLVl 89 (730)
.+...+|.||..+|+.+.-.+..++||.+|+..|.. .+.+....+|+ |-.|.|. .+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 456789999999999998899999999999999988 56777888888 5578883 46899999999999988754
No 113
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.75 E-value=2.7e-05 Score=69.43 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=37.7
Q ss_pred CCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++++ .+|+.+.+.|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 23 qI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 23 EVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 4444 678999999999999999999999 99999999999873
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.66 E-value=0.00017 Score=64.89 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=33.8
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.++|++++||..||.+|+ ++|+|+++|||||+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 5778899999999999999999 99999999999977
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.59 E-value=0.015 Score=52.52 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--C-hhhhccccccCCCEEEEee
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--D-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLk--D-dkTLsdYGIqdGSTLhLVl 89 (730)
.....+|.||..+|+.+.-.+..++||.+|.+-|....+.+.....|+ |--|.|. | +++|.++|+.+..+|++..
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 344689999999999999999999999999999999887776777777 5578886 3 5899999999988888776
Q ss_pred ecC
Q 004798 90 RQP 92 (730)
Q Consensus 90 Rlp 92 (730)
...
T Consensus 90 ~~~ 92 (109)
T 2dzk_A 90 AGR 92 (109)
T ss_dssp CSS
T ss_pred CcC
Confidence 543
No 116
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.52 E-value=4.7e-05 Score=64.55 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=38.4
Q ss_pred ccCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 79 IqdGSTLhLVlRlpggp~ss~~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.++++++++++.+. .+.+++ ..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 2 ~~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 2 MEPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp -------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 345666777665433 345555 568888899999999999999999 89999999999873
No 117
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.51 E-value=0.00041 Score=68.75 Aligned_cols=42 Identities=5% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+|++ .+|+++.++|.+++||.+||.+|+ .+|||+++|||||+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp ---------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 4455 568899999999999999999999 99999999999985
No 118
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.29 E-value=0.00012 Score=65.83 Aligned_cols=42 Identities=5% Similarity=-0.128 Sum_probs=37.5
Q ss_pred CCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+++ .+|+.+.++|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 30 ~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 30 EVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp EEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4444 568889999999999999999999 99999999999977
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.16 E-value=0.016 Score=53.62 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--CC-hhhhccccccCCCEEEEee
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--KD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvL--kD-dkTLsdYGIqdGSTLhLVl 89 (730)
.....+|.||..+|+.+.-.+..++||.+|...|... +.+.....|+ |-.|.| .| +++|.++|+.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3456899999999999999999999999999999887 7777778887 568888 34 6899999999988887764
Q ss_pred e
Q 004798 90 R 90 (730)
Q Consensus 90 R 90 (730)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.00028 Score=62.49 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=36.4
Q ss_pred hhhhccccccCCCEEEEeeecCCCCCCCCCCCCC-CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 71 dkTLsdYGIqdGSTLhLVlRlpggp~ss~~sI~v-~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
...+++|.| ++|.+|.++..- .+.+++ ..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCC--CcceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 457889988 466666654321 123333 378888899999999999999999 89999999999974
No 121
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.00032 Score=61.05 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=33.6
Q ss_pred CCCCCcccccc--cCCchhcccccc-c-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~--pSdTI~~VK~~I-q-~EGIPpdqQRLIfa 142 (730)
..|+++.+.|+ +++||..||.+| + ++|+|+++|||||+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 56777888766 999999999999 7 89999999999985
No 122
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.58 E-value=0.097 Score=47.00 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=61.7
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--ChhhhccccccCCCEEEEeee
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--FkGKvLk--DdkTLsdYGIqdGSTLhLVlR 90 (730)
....+|.||..+|+.+.-.+..++||.+|..-|..+ +..+...+|+ |-.|.|. .+++|.++||.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 457999999999999998999999999999999865 5556677786 5578886 368999999999988877554
No 123
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.41 E-value=0.039 Score=51.07 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=58.8
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCC-hhhhccccccCCCEEE
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTLH 86 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaekt-GIPpeqQRLI--FkGKvLkD-dkTLsdYGIqdGSTLh 86 (730)
+.....+|.||..+|+.+.-.+..++||.+|++.|.... ++......|+ |-.|.|.| +++|.++|+.+..+|.
T Consensus 48 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 48 EAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp TTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 344568999999999999999999999999999998864 3455667776 55788875 5899999999855443
No 124
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.40 E-value=0.0026 Score=51.95 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 457778899999999999999999 89999999999985
No 125
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.20 E-value=0.00046 Score=57.15 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 467888899999999999999999 89999999999874
No 126
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.98 E-value=0.0015 Score=57.57 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=32.4
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+.+.|.+++||++||.+|+ ++|||+++|||+|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 467789999999999999999 99999999999985
No 127
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.98 E-value=0.0026 Score=55.04 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.7
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.....+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 334567899999999999999 99999999999963
No 128
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=94.93 E-value=0.00057 Score=58.04 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||.+||.+|+ +.|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 457788899999999999999999 89999999999985
No 129
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.88 E-value=0.0046 Score=56.55 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+++.+.|.+++||.+||.+|+ ..|||+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 467888899999999999999999 89999999999974
No 130
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.86 E-value=0.073 Score=47.14 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCChhhhccccccC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVED 81 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk---GKvLkDdkTLsdYGIqd 81 (730)
-++.++++.|....-++..++|+|..++.+|--.|.+++.+.++.-.|.-. +..|+-+++|.||||++
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456889999999988999999999999999999999999999999888754 45788999999999987
No 131
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.84 E-value=0.00063 Score=58.24 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||++||.+|+ .+|+|+++|||+|.
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 99999999999975
No 132
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.73 E-value=0.002 Score=57.24 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+.+.|.+++||++||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 456789999999999999999 99999999999984
No 133
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.67 E-value=0.0012 Score=55.38 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 467788899999999999999999 89999999999874
No 134
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=94.67 E-value=0.001 Score=61.58 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=31.5
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.++|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 56789999999999999999 99999999999974
No 135
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.66 E-value=0.001 Score=61.46 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=31.7
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.++|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 47789999999999999999 99999999999965
No 136
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.62 E-value=0.059 Score=56.86 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=77.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCChhhhccccccCCCEEEE
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektG----IPpeqQRLIF------kGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
.+.++|... +.+-++.+++++||.++..+|.++.. .++++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777665 67788999999999999999988874 3556666665 456788999999999999999988
Q ss_pred eeecCCCCCCCCCCCCCCCCCCcccccccCCchhccccccc-CCCC
Q 004798 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGV 132 (730)
Q Consensus 88 VlRlpggp~ss~~sI~v~tGrtitl~V~pSdTI~~VK~~Iq-~EGI 132 (730)
..+... ..+.-.+|......|+.+.++..+-..+. +-|+
T Consensus 82 ~~~~~~------~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L 121 (371)
T 3ivf_A 82 RKKQRP------LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI 121 (371)
T ss_dssp EECEEE------EEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC
T ss_pred cCceeE------EEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 654321 11222566667777877777666555444 3444
No 137
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=94.59 E-value=0.006 Score=58.19 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||.+||..|+ .+|||+++|||+|.
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 467788899999999999999999 89999999999986
No 138
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.57 E-value=0.16 Score=46.65 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=53.3
Q ss_pred CCcEEEEEEecC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----CeecCCh----------
Q 004798 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD---------- 71 (730)
Q Consensus 16 ~stMqItVKtL~--GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIFk----GKvLkDd---------- 71 (730)
-.+|.|+|-..+ +..+.+.|-..+||.++|+||.+.. ++| +++..|-+. |+.|.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 355777776553 4557888889999999999997764 333 356667663 4566541
Q ss_pred ---hhhccccccCCCEEEEeee
Q 004798 72 ---QLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 72 ---kTLsdYGIqdGSTLhLVlR 90 (730)
.||+.|+|.||++|-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 139
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.48 E-value=0.0016 Score=58.34 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
.+|+.+.+.|.+++||+.||.+|+ ++||||++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 467788899999999999999999 9999999999853
No 140
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.40 E-value=0.13 Score=48.90 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCCcEEEEEEecC------CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe----CCe-ecCCh----
Q 004798 15 SETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC----RGK-VLKDD---- 71 (730)
Q Consensus 15 s~stMqItVKtL~------GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF----kGK-vLkDd---- 71 (730)
.-.+|.|+|-... ...+.+.|-..+||.++|+||.+.. ++| +++.-|-+ .|+ .|.|.
T Consensus 21 ey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 21 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp -CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcc
Confidence 3456778876653 2468889999999999999998765 343 23445554 233 35542
Q ss_pred ---------hhhccccccCCCEEEEeeecC
Q 004798 72 ---------QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 72 ---------kTLsdYGIqdGSTLhLVlRlp 92 (730)
.||+.|+|.||++|-|+.+..
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred cccCCceeecchhccCCCCCCEEEEEECCC
Confidence 289999999999999988764
No 141
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.34 E-value=0.0014 Score=55.99 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
|.+++ .+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 34444 577888899999999999999999 89999999999974
No 142
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.0023 Score=56.91 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457788899999999999999999 99999999999975
No 143
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.27 E-value=0.0013 Score=56.35 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 457778899999999999999999 89999999999874
No 144
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.18 E-value=0.0033 Score=54.87 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.++++|..||.+|+ ++|||+++|||+|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457778899999999999999999 99999999999985
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.91 E-value=0.0028 Score=54.59 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=35.1
Q ss_pred CCCCC-CCCCCccc-ccccCCchhccccccc-CCCCCcchhHHH
Q 004798 100 THNLP-GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (730)
Q Consensus 100 ~sI~v-~tGrtitl-~V~pSdTI~~VK~~Iq-~EGIPpdqQRLI 140 (730)
+.+++ ..++.+.+ +|.+++||.+||.+|+ .+|||+++|||+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 44444 35677778 9999999999999999 999999999998
No 146
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.85 E-value=0.0021 Score=54.00 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456777899999999999999999 89999999999874
No 147
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.74 E-value=0.0038 Score=57.35 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-------CCCC--CcchhHHHHHh
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-------~EGI--PpdqQRLIfav 143 (730)
.+|+++.++|++++||.+||.+|+ ++|+ |+++|||||+-
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G 71 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC
Confidence 567889999999999999999998 3475 69999999863
No 148
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.56 E-value=0.0032 Score=55.97 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=31.7
Q ss_pred CCCCCccc--ccccCCchhcccccc-c-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl--~V~pSdTI~~VK~~I-q-~EGIPpdqQRLIfa 142 (730)
..|+.+.+ .|.+++||..||.+| + .+|+|+++|||||+
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 44666556 556999999999999 7 88999999999975
No 149
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=93.38 E-value=0.0024 Score=52.79 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.++|.++++|..||..++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 456778899999999999999999 89999999999875
No 150
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=93.38 E-value=0.0025 Score=54.37 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 46777889999999999999999 99999999999974
No 151
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.25 E-value=0.0021 Score=55.63 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=36.5
Q ss_pred CCCCCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~sI~v~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+++.+++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 44555346778899999999999999999 89999999999875
No 152
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=93.17 E-value=0.0023 Score=52.61 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.3
Q ss_pred CCCCCc-ccc-cccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrti-tl~-V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+ .++ |.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 356664 788 999999999999999 89999999999874
No 153
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.14 E-value=0.0052 Score=52.82 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.1
Q ss_pred CcccccccCCchhccccccc-CC--CCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~E--GIPpdqQRLIfa 142 (730)
.+.+.|.+++||.+||.+|+ .. |+|+++|||||.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 34556669999999999999 66 999999999975
No 154
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.08 E-value=0.0038 Score=52.73 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=33.3
Q ss_pred CCC-CCccc-ccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tG-rtitl-~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..| +.+.+ .|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346 57788 5999999999999999 89999999999974
No 155
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.06 E-value=0.0028 Score=55.54 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCCc-ccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 107 SRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 107 Grti-tl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
++.+ .++|.+++||.+||.+|+ .+|||+++|||+|
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 5667 489999999999999999 9999999999996
No 156
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.02 E-value=0.44 Score=47.92 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.2
Q ss_pred EEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-CC----eecCC-hhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-RG----KVLKD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~GK--t~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF-kG----KvLkD-dkTLsdYGIqdGSTLhLVl 89 (730)
+.|++...... .+++.++..+||.+||+++.+.++|+.+ +.||-. .+ ..|.| +++|.+++|.++..|.|-+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 44555443322 2456789999999999999999999997 688863 32 35665 5899999999999999998
Q ss_pred ecCCC
Q 004798 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
+...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 87654
No 157
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.97 E-value=0.44 Score=47.41 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.6
Q ss_pred EEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCC-hhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~G--Kt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLI--F-kG--KvLkD-dkTLsdYGIqdGSTLhLVl 89 (730)
+.|++..... ..+++.++..+||.+|++++.+.++++.+ +.||- | .+ ..|.| +++|.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455544332 23567889999999999999999999997 67875 3 33 35655 5799999999999999988
Q ss_pred ecCCC
Q 004798 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
|...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 86554
No 158
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.96 E-value=0.0054 Score=50.75 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346677889999999999999999 89999999999974
No 159
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=92.89 E-value=0.0034 Score=56.96 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=31.9
Q ss_pred CCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..+++.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 567889999999999999999 99999999998754
No 160
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.0034 Score=54.70 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 567788899999999999999999 89999999999974
No 161
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=92.79 E-value=0.0032 Score=53.79 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.2
Q ss_pred CCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
|++++ ..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 44444 577888899999999999999999 89999999999974
No 162
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.63 E-value=0.0056 Score=54.40 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=29.0
Q ss_pred CcccccccCCchhccccccc-C-CCCCc-chhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-G-DGVPS-EISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~-EGIPp-dqQRLIfa 142 (730)
.+.+.|.+++||..||.+|+ + +|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 45778899999999999999 3 67775 99999985
No 163
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.54 E-value=0.0046 Score=51.31 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 346677889999999999999999 89999999999984
No 164
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=92.53 E-value=0.0076 Score=55.94 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-------CCCCC--cchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-------~EGIP--pdqQRLIfa 142 (730)
.+|+++.++|.+++||.+||.+|+ ++|+| +++|||||+
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 567889999999999999999998 36884 899999986
No 165
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.46 E-value=0.0046 Score=54.73 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 357778899999999999999999 99999999999974
No 166
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.45 E-value=0.0043 Score=54.09 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.4
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 57789999999999999999 89999999999874
No 167
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.41 E-value=0.0097 Score=55.60 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=33.0
Q ss_pred CCCCCc-ccccccCCchhcccccc-----c-CCCCCc--chhHHHHH
Q 004798 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSA 142 (730)
Q Consensus 105 ~tGrti-tl~V~pSdTI~~VK~~I-----q-~EGIPp--dqQRLIfa 142 (730)
.+|+.+ .+.+++++||.+||.+| + ++|+|+ ++|||||+
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 456666 58999999999999999 6 899997 89999986
No 168
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.37 E-value=0.0053 Score=50.46 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 346667789999999999999999 89999999999874
No 169
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=92.30 E-value=0.0039 Score=53.34 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 456778889999999999999999 89999999999974
No 170
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.20 E-value=0.0051 Score=53.23 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-C---CCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~---EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 356777889999999999999999 5 8999999999874
No 171
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=92.02 E-value=0.0051 Score=51.23 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhccccccc-C---CCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~---EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 356777899999999999999999 4 8999999999874
No 172
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.97 E-value=0.0055 Score=53.41 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=32.6
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
.++.+.+.|.+++||..||.+|+ ..|||+++|||+|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 45667789999999999999999 9999999999995
No 173
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.96 E-value=0.0088 Score=52.58 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.8
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.++|.+++||++||.+|+ +.|||+++|||+|.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4677789999999999999999 99999999999874
No 174
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=91.91 E-value=0.0042 Score=50.08 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346777889999999999999999 89999999999874
No 175
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=91.61 E-value=0.0061 Score=58.67 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 467888899999999999999999 89999999999985
No 176
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.21 E-value=0.012 Score=51.14 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.2
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46678999999999999999 99999999999984
No 177
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=91.07 E-value=0.003 Score=56.36 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 46677889999999999999999 89999999999874
No 178
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=90.97 E-value=0.58 Score=43.36 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=52.9
Q ss_pred CCcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCC---------
Q 004798 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD--------- 70 (730)
Q Consensus 16 ~stMqItVKtL~---GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIFk-G---K-vLkD--------- 70 (730)
-.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++| +++..|-+. | + .|.|
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 345777775543 3447788889999999999997754 333 245666652 3 3 3543
Q ss_pred h----hhhccccccCCCEEEEeeec
Q 004798 71 D----QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 71 d----kTLsdYGIqdGSTLhLVlRl 91 (730)
. .||+.|+|.+|++|-|+.+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 2 37899999999999998765
No 179
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=90.50 E-value=0.01 Score=51.31 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346677789999999999999999 89999999999974
No 180
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.43 E-value=1 Score=42.36 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=51.6
Q ss_pred cEEEEEEec--CCcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCC---------h--
Q 004798 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D-- 71 (730)
Q Consensus 18 tMqItVKtL--~GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIFk-G---K-vLkD---------d-- 71 (730)
++.|++-.. ++..+.+.|-..+||.++|+||.+.. ++| ++++.|-+. | + .|.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 345554432 34557888889999999999997764 333 356677652 3 3 3544 1
Q ss_pred --hhhccccccCCCEEEEeeec
Q 004798 72 --QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 72 --kTLsdYGIqdGSTLhLVlRl 91 (730)
.||..|+|.||++|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 37899999999999998764
No 181
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=90.25 E-value=0.013 Score=52.54 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=43.5
Q ss_pred CEEEEeeecCCCCCCCCCCCCCCCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 83 STLhLVlRlpggp~ss~~sI~v~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|.|.++.+..... ...-.+|+.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~---~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDK---TEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSS---CSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCccc---cccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 467777776542110 0111578888899999999999999999 89999999999984
No 182
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=90.05 E-value=2.2 Score=35.08 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.7
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.|+|+|.-. .....+++....||.+|.+++ +++++...+..+|+.+..+. -|++|+.|.++--.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 388888774 334567787789999999876 56777778889999886554 68899999987543
No 183
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.04 E-value=0.025 Score=48.94 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=31.4
Q ss_pred CCCCCc--cc-ccccCCchhccccccc--CCCCCcchhHHHHH
Q 004798 105 GTSRSH--GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrti--tl-~V~pSdTI~~VK~~Iq--~EGIPpdqQRLIfa 142 (730)
..|+.. .+ +|.+++||.+||.+|+ ++|+|+++|||+|.
T Consensus 18 ~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 18 AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 344444 36 8999999999999999 48999999999875
No 184
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=90.03 E-value=0.0084 Score=53.65 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456778899999999999999999 89999999999974
No 185
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.76 E-value=0.015 Score=49.93 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=32.8
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5667789999999999999999 89999999999874
No 186
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=89.76 E-value=0.026 Score=55.74 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+++.+.|.+++||.+||.+|+ .+|||+++|||+|.
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 567888999999999999999999 89999999999974
No 187
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=89.70 E-value=2.1 Score=37.21 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=50.1
Q ss_pred CcEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCChhhhcccc
Q 004798 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (730)
Q Consensus 17 stMqItVKtL~------G-Kt~tLeVdpsdTV~dLKekIaektG-I----------PpeqQRLIFkGKvLkDdkTLsdYG 78 (730)
..|+|+||... | +...+++....||.+|.+.+..++. + ......+..+|+.+.. ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 45999999884 3 4677888778999999999987742 1 1234567777877652 677
Q ss_pred ccCCCEEEEeee
Q 004798 79 VEDGHTLHMVVR 90 (730)
Q Consensus 79 IqdGSTLhLVlR 90 (730)
|++|+.|.++-.
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 999999988743
No 188
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.59 E-value=1.6 Score=38.11 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCChhhhccc--cccCCCEEEEe
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY--HVEDGHTLHMV 88 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK-----vLkDdkTLsdY--GIqdGSTLhLV 88 (730)
...|+|+|.+- -++.|+|.+..+..+|.++|.++.+++++...|.|+.. ++..+..|.+. .++++ .|.|.
T Consensus 3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~ 79 (83)
T 1oey_A 3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLW 79 (83)
T ss_dssp SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEE
T ss_pred CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEE
Confidence 44588888885 68899999999999999999999999999999999863 33333344332 23344 46666
Q ss_pred ee
Q 004798 89 VR 90 (730)
Q Consensus 89 lR 90 (730)
++
T Consensus 80 C~ 81 (83)
T 1oey_A 80 CE 81 (83)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 189
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=89.38 E-value=0.022 Score=50.13 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4456789999999999999999 89999999999874
No 190
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=89.34 E-value=0.011 Score=47.70 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.|+.+.+.|.+++||..||..|+ ..|+|++.|||+|.
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 46667789999999999999999 89999999999974
No 191
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.29 E-value=0.024 Score=50.43 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=40.4
Q ss_pred CCCEEEEeeecCCCCCCCCCCCCCCCCCCccccccc-CCchhccccccc-CCCCCcchhHHHHH
Q 004798 81 DGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 81 dGSTLhLVlRlpggp~ss~~sI~v~tGrtitl~V~p-SdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+...+.|.++.+.. ..|+.+.+.|.+ ++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 24 HPGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp CCSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 33456666654321 146777899998 999999999999 89999999999973
No 192
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.24 E-value=0.012 Score=50.12 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45667789999999999999999 89999999999864
No 193
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.11 E-value=0.019 Score=49.10 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCcccccccC-----Cchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pS-----dTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.++ .||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45566788885 99999999999 89999999999964
No 194
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=88.70 E-value=0.013 Score=47.59 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5566788999999999999999 89999999999864
No 195
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.61 E-value=0.007 Score=54.68 Aligned_cols=38 Identities=5% Similarity=-0.159 Sum_probs=31.3
Q ss_pred CCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchh
Q 004798 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (730)
Q Consensus 100 ~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQ 137 (730)
|.+++ .+|+.+.+.|.+++||++||.+|+ ++|+|++.|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 44444 678899999999999999999999 888888543
No 196
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.57 E-value=0.038 Score=50.32 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=30.9
Q ss_pred CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+...+.+++||..||.+|+ ++|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 45678999999999999999 99999999999973
No 197
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=88.44 E-value=0.021 Score=51.49 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 89999999999875
No 198
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.17 E-value=0.03 Score=51.38 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||.+||.+|+ +.|||+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5667789999999999999999 89999999999975
No 199
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=87.78 E-value=0.029 Score=49.93 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=30.8
Q ss_pred CCCCcccccc-cCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~-pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+|+. .++|. +++||.+||.+|+ +.|||+++|||++.
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 4443 57899 9999999999999 99999999999754
No 200
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.51 E-value=0.039 Score=48.60 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.4
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.++|.+++||..||.+|+ ..|+++++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999875
No 201
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=87.33 E-value=0.042 Score=48.27 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.4
Q ss_pred cccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999874
No 202
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.27 E-value=2.2 Score=37.66 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=43.1
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIFkGK 66 (730)
++...|+|++.. +|..+.+.|+++.+..+|.++|.+.+++..++ ..|.|...
T Consensus 2 ~~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 2 PLGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CCSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 344568888877 57899999999999999999999999987654 67888764
No 203
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=87.14 E-value=1.3 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=47.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
|+|+||....+...+++....||.+|-+ +.+++++.-.+..+|+.+..+. +.+|++|.++--.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V 63 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLI 63 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEee
Confidence 7888888755556689999999988764 6789998887888899886554 2358888876543
No 204
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.61 E-value=2.8 Score=39.36 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=49.3
Q ss_pred CcEEEEEEe---cC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEeC-C---eecC------
Q 004798 17 TTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVLK------ 69 (730)
Q Consensus 17 stMqItVKt---L~------GKt~tLeVdpsdTV~dLKekIaek----tGIPp----eqQRLIFk-G---KvLk------ 69 (730)
.++.|+|-. .. ...+.+.|-..+||.++|+||.+. .++|- +++.|-+. | ..|.
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456777766 32 246888898999999999999654 35543 34455442 2 2232
Q ss_pred ----Ch----hhhccccccCCCEEEEee
Q 004798 70 ----DD----QLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 70 ----Dd----kTLsdYGIqdGSTLhLVl 89 (730)
+. .||+.|+|.||++|-|+.
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 22 368889999999998864
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=85.83 E-value=0.027 Score=50.31 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHh
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfav 143 (730)
...+.+.+.+.+.++|..||..|+ ++|||+++|+|+|.-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345667789999999999999999 999999999999865
No 206
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.63 E-value=1.8 Score=37.87 Aligned_cols=71 Identities=6% Similarity=0.039 Sum_probs=45.6
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 12 AESSETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 12 se~s~stMqItVKtL~GKt~tLeVdps-dTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+.-....|+|+| +|+.+ ++... .||.+|.+++ +++++...+..+|+.+..+ .+.++-|++|+.|.++--
T Consensus 14 ~~~~~~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 14 SGHIGGRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp --------CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE
T ss_pred CCCCCcceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc
Confidence 344556677766 56654 45665 8999998876 5667777788899887543 445667999999998864
Q ss_pred cC
Q 004798 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 84 V~ 85 (87)
T 1tyg_B 84 VG 85 (87)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 207
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.10 E-value=1.4 Score=40.04 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=50.1
Q ss_pred CcEEEEEEecC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCChh---hh-
Q 004798 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (730)
Q Consensus 17 stMqItVKtL~------G--Kt~tLeVdp---sdTV~dLKekIaektGIPpeqQRLIFk-GK------vLkDdk---TL- 74 (730)
++|+|+|+... + +.+.+++.. ..||.+|.+.+.+++ +..+.+|+.. |+ +|-|+. .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 55999999884 2 366788873 369999999998876 2223333322 32 232332 33
Q ss_pred -ccccccCCCEEEEeeecCCC
Q 004798 75 -SAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 75 -sdYGIqdGSTLhLVlRlpgg 94 (730)
.+|-|++|+.|.++-...++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 36889999999998777665
No 208
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=84.84 E-value=2.5 Score=34.84 Aligned_cols=69 Identities=7% Similarity=0.187 Sum_probs=46.1
Q ss_pred EEEEEEecCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 19 MqItVKtL~G-Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
|+|+||.... +.-.+++ ...||.+|++.+..+.++.. ....+..+|+.+.+ .++-|++|+.|.++-...
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCC
Confidence 6788887642 1134666 56899999999986543322 44566677877543 356789999999885443
No 209
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.03 E-value=0.054 Score=46.52 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=30.0
Q ss_pred CCCCCcccccccCCchhcccccccCCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||.+||.+|+..- +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST--TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC--cCcEEEEEC
Confidence 456677889999999999999999333 899999974
No 210
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.77 E-value=7.3 Score=32.80 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=42.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C----CC------CCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTG-V----LS------EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-I----Pp------eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+...+++....||.+|++.+..++. + -. ...++..+|+.... ++-|++|+.|.++-...
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5677888778899999999988753 1 00 12567778877654 56789999999885443
No 211
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.99 E-value=5.7 Score=35.77 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCChhhh----ccccccCC
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLL----SAYHVEDG 82 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF-------kGKvLkDdkTL----sdYGIqdG 82 (730)
.+...+-|+|-..||....|.|+..+|+.++-+++..+.++..+.-.-+| --+.|+|+..| ..+.+...
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~ 84 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGD 84 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCC
Confidence 44555788888899999999999999999999999999987654432222 23678888654 44566667
Q ss_pred CEEEEeeecCC
Q 004798 83 HTLHMVVRQPV 93 (730)
Q Consensus 83 STLhLVlRlpg 93 (730)
..|.+..+..+
T Consensus 85 nr~~F~kr~~K 95 (100)
T 1wgr_A 85 SRFVFRKNFAS 95 (100)
T ss_dssp CEEEECSCCSS
T ss_pred cEEEEecchhc
Confidence 78777665443
No 212
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.75 E-value=0.078 Score=46.97 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.5
Q ss_pred cccC-Cchhccccccc-CC--CCCcch-hHHHHH
Q 004798 114 VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (730)
Q Consensus 114 V~pS-dTI~~VK~~Iq-~E--GIPpdq-QRLIfa 142 (730)
|.++ +||..||.+|+ .. |+|+++ |||+|.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 5565 99999999999 77 999999 999864
No 213
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=82.68 E-value=0.071 Score=56.31 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.7
Q ss_pred CCCCCC--CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 99 ~~sI~v--~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+++++ ..++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 344444 467888899999999999999999 89999999999975
No 214
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=81.88 E-value=3.4 Score=47.56 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=52.9
Q ss_pred CCCcEEEEEEecCC------cEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEeC----Ce-ecCCh----
Q 004798 15 SETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLICR----GK-VLKDD---- 71 (730)
Q Consensus 15 s~stMqItVKtL~G------Kt~tLeVdpsdTV~dLKekIaekt--GIPp------eqQRLIFk----GK-vLkDd---- 71 (730)
.-.+|.|+|-..+| ..+.+.|-..+||.++|+||.+.. ++|- ++..|-+. |+ .|.|.
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 34567777765432 347788989999999999998653 3332 45555542 33 35442
Q ss_pred ---------hhhccccccCCCEEEEeeecCC
Q 004798 72 ---------QLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 72 ---------kTLsdYGIqdGSTLhLVlRlpg 93 (730)
.||+.|+|.||++|-|+.+...
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred eecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 3799999999999999877643
No 215
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=80.22 E-value=0.1 Score=56.30 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhcccccccC----CCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDRG----DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq~----EGIPpdqQRLIfa 142 (730)
..|+.+.++|.+++||..||.+|+. +|||+++|||||.
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 4578888999999999999999983 6899999999986
No 216
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=79.60 E-value=7.1 Score=34.41 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=46.2
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EeCC----eecCChhhhccccccCCCEEEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL-ICRG----KVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL-IFkG----KvLkDdkTLsdYGIqdGSTLhL 87 (730)
..|+|+|-. ++..|.|.|..+.+..+||.+|.++..+ +...| .|++ ..|.++..|.. -|+..+.|.|
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISV 82 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEE
Confidence 568888866 4678999999999999999999999988 34444 3443 34444444432 2455555544
No 217
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=79.15 E-value=6.7 Score=39.56 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=52.6
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCChhhhccccccCCCEEEEeee
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF---kGK--vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+|.|.|..+|| ++.+.|++++|+.+|-++|.++.++...+ .=|.| +|. .|+.++.|.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47899999998 67899999999999999999999986533 34444 232 466677787776555554444444
No 218
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=79.13 E-value=4.2 Score=41.78 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCChhhhccccccCCC
Q 004798 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGH 83 (730)
Q Consensus 10 s~se~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIFk---G--KvLkDdkTLsdYGIqdGS 83 (730)
+..++....|.+.|..+||....+.|++..|+.+|-++|.++.++...+ .=|.|. | ..|+.++.|.+.......
T Consensus 9 ~~~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~ 88 (296)
T 3qij_A 9 SGRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPW 88 (296)
T ss_dssp --------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CC
T ss_pred ccCCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCc
Confidence 3456777889999999999999999999999999999999999987533 345443 2 246677777776443344
Q ss_pred EEEEeee
Q 004798 84 TLHMVVR 90 (730)
Q Consensus 84 TLhLVlR 90 (730)
++++-++
T Consensus 89 ~l~frvk 95 (296)
T 3qij_A 89 NFTFNVK 95 (296)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 5555443
No 219
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=78.30 E-value=4 Score=36.10 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=54.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecC
Q 004798 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
+.-.++-..++..||+.++.+.++.-+.-.+...+..|+++++|-|-+|+-.-.+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 34467788999999999999999999999999999889999999999999888888877643
No 220
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=77.99 E-value=0.094 Score=44.54 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=29.8
Q ss_pred CCCCCcccc-cccCCchhccccccc-CCCCCcchhHHHH
Q 004798 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tGrtitl~-V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
.+|+.+ +. +.+++||.+||..|+ +.|||+++|||+|
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 345433 55 889999999999999 8999999999974
No 221
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.22 E-value=6.5 Score=40.19 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe--CCe--ecCChhhhccccccCCCEEEEeee
Q 004798 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF--kGK--vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
...+.+.|..+|| ++.+.|++++|+.+|-++|..+.++... -.=|.| +|. .|+.+++|.+..++.+..+.|.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4668999999998 7889999999999999999999998753 234444 343 477778888876655554444444
Q ss_pred c
Q 004798 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 222
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=76.77 E-value=12 Score=34.05 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=56.2
Q ss_pred EEEEEEecCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCe---ecCChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGK---VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~G---Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIFkGK---vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
++|+|..++. ...+++|..+.-|..|..+|-++..++. .+--|-..-| +|+-..+|..|||+.++.|++.-.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 6777877554 5688999999999999999998887655 3444444332 578889999999999999998753
No 223
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=76.28 E-value=0.15 Score=53.74 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=32.7
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIf 141 (730)
.|+.+.+.|.+++||..||.+|+ ++|||+++|+||+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 35677889999999999999999 9999999999994
No 224
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=76.08 E-value=9.1 Score=32.55 Aligned_cols=73 Identities=5% Similarity=0.026 Sum_probs=45.9
Q ss_pred EEEEEEecC------CcEEEEEecCCCCHHHHHHHHHHHhCC------C-------CCCeEEEeCCeecCChhhhccccc
Q 004798 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTGV------L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (730)
Q Consensus 19 MqItVKtL~------GKt~tLeVdpsdTV~dLKekIaektGI------P-------peqQRLIFkGKvLkDdkTLsdYGI 79 (730)
|+|+|+... |+...+++ ...||.+|++.+..++.- . ....++..+|+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667777663 33334665 457999999999887530 1 013566677776653222 25679
Q ss_pred cCCCEEEEeeecCC
Q 004798 80 EDGHTLHMVVRQPV 93 (730)
Q Consensus 80 qdGSTLhLVlRlpg 93 (730)
++|+.|.++-...+
T Consensus 79 ~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 79 ADGDSVTILPAVAG 92 (93)
T ss_dssp CTTCEEEEEECCTT
T ss_pred CCCCEEEEECCCCC
Confidence 99999998865443
No 225
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=75.47 E-value=9.9 Score=39.94 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=53.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCC---------eecCChhhhccccccCCCEEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIFkG---------KvLkDdkTLsdYGIqdGSTLh 86 (730)
..+.++|..++|....+.|+.+.|+.+|-++|+++.++.. +..-|.+.. +-|+.+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 3478889999999999999999999999999999999764 334555432 234455666666555555655
Q ss_pred Eeee
Q 004798 87 MVVR 90 (730)
Q Consensus 87 LVlR 90 (730)
+.++
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5444
No 226
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=74.85 E-value=19 Score=31.22 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=43.9
Q ss_pred cEEEEEEecC-------C-cEEEEEec--CCCCHHHHHHHHHHHhCCCCCCe-EEEeCCe------ecCChh---hh--c
Q 004798 18 TIEIKIKTLD-------S-QTYTLRVD--KQVPVPALKEQIASVTGVLSEQQ-RLICRGK------VLKDDQ---LL--S 75 (730)
Q Consensus 18 tMqItVKtL~-------G-Kt~tLeVd--psdTV~dLKekIaektGIPpeqQ-RLIFkGK------vLkDdk---TL--s 75 (730)
+|+|+|+... | +...+++. ...||.+|++.+.+++.-...+. .+.-+|+ ++-|+. .+ .
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~ 80 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK 80 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGG
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCC
Confidence 3788888763 2 45667776 56899999999988863111111 0111221 222222 22 3
Q ss_pred cccccCCCEEEEeeec
Q 004798 76 AYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 76 dYGIqdGSTLhLVlRl 91 (730)
++-|++|+.|.++-..
T Consensus 81 d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 81 DYILEDGDIISFTSTL 96 (99)
T ss_dssp GCBCCTTCEEEEEECT
T ss_pred CcCcCCCCEEEEECCC
Confidence 6779999999887543
No 227
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=73.32 E-value=9.3 Score=43.96 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=54.1
Q ss_pred CCCcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----Ce-ecCC--------
Q 004798 15 SETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GK-VLKD-------- 70 (730)
Q Consensus 15 s~stMqItVKtL~---GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIFk----GK-vLkD-------- 70 (730)
.-.+|.|+|-..+ ...+.+.|-..+||.++|+||-+.. ++| +++..|-+. |+ .|.|
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 3456788876554 3568889999999999999997764 332 355566542 33 3443
Q ss_pred -h----hhhccccccCCCEEEEeeecC
Q 004798 71 -D----QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 71 -d----kTLsdYGIqdGSTLhLVlRlp 92 (730)
+ .||+.|+|.||++|-|+.+..
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred CceeEecchhhcCCCCCceEEEEeccc
Confidence 1 378999999999999988763
No 228
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=73.03 E-value=9.4 Score=31.33 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=39.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-----IPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+.+.++ ....||.+|++.+..++. +......+..+|+.... ++-|++|+.|.++-..
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCC
Confidence 345555 466799999999875531 22334567788887752 5678999999987543
No 229
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=72.42 E-value=8.7 Score=32.17 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=44.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
+|+.+.+ ...||.+|.+ ..+++++..-+.++|+.+.. ..+.++-|++|+.|.++--..++
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 5776554 5689988876 45788888888899988743 35567789999999998766554
No 230
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.66 E-value=3.2 Score=38.64 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004798 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF 63 (730)
..+.|-.++|+.+||++|++.+|+|+++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999864
No 231
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.61 E-value=9.9 Score=43.07 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC---C--eecCChhhhccccccCCCEEEEeee
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIFk---G--KvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
..|.|.|..+|| ++.|.|++++|+.+|=..|+...|+... ..=|.|. | ..|+.+++|.+.+++.+..+.|.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468999999998 6789999999999999999999998653 3455553 2 3567778888887766665555555
Q ss_pred c
Q 004798 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 232
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.29 E-value=15 Score=31.99 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=44.1
Q ss_pred cEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCChhh
Q 004798 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (730)
Q Consensus 18 tMqItVKtL~------G-Kt~tLeVdpsdTV~dLKekIaektG-IPp---------eqQ-------RLIFkGKvLkDdkT 73 (730)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 5889999874 2 344444 6899999999987742 111 012 5666776553221
Q ss_pred hccccccCCCEEEEeee
Q 004798 74 LSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 74 LsdYGIqdGSTLhLVlR 90 (730)
-.++-|++|+.|.++-.
T Consensus 79 ~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 79 GLETLLKDSDEIGILPP 95 (99)
T ss_dssp STTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCEEEEECC
Confidence 23556899999988754
No 233
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.80 E-value=1.5 Score=39.70 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=46.3
Q ss_pred CcEEEEEEecC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEe-CC--e------ecCChhh---h
Q 004798 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLIC-RG--K------VLKDDQL---L 74 (730)
Q Consensus 17 stMqItVKtL~------GKt~tLeVdp----sdTV~dLKekIaektGIPpeqQRLIF-kG--K------vLkDdkT---L 74 (730)
++|+|+||+.. |+...+++.. ..||.+|-+.|.+.+ +..+-+|+. +| + +|-|++. |
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 35888888875 3555666663 258999888887775 222334432 24 2 3433322 2
Q ss_pred --ccccccCCCEEEEeeecCC
Q 004798 75 --SAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 75 --sdYGIqdGSTLhLVlRlpg 93 (730)
.+|-|++|++|.++-...+
T Consensus 81 ~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCC
T ss_pred CCcccCCCCcCEEEEeCCCcc
Confidence 3588999999888665544
No 234
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=68.90 E-value=10 Score=30.54 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=42.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+|+.+ ++....||.+|.+++ +++.+...+..+|+.+..+ ...++-+++|+.|.++-..
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56654 456678999999876 5667777788888887533 3345678999999887543
No 235
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.87 E-value=20 Score=32.59 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCe--ecCChhhhccccccCCCEEEEeeec
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI---FkGK--vLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
..+-..|-..+...+++.+....|+.+|+..++++.+...+.+.|. +.|. +|+++..--.-.+.-...|++..|.
T Consensus 8 D~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 8 EEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred CceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 3455667667778888999999999999999999999876678775 6674 4555543333334445666666553
No 236
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=65.63 E-value=11 Score=30.81 Aligned_cols=57 Identities=4% Similarity=0.138 Sum_probs=40.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ--RLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+...+++....||.+|++.+...+.- .... .+..+|+.+.. ++-+++|+.|.++-..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECCC
Confidence 35566776778999999998776420 1233 67788888764 3678999999887543
No 237
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=62.81 E-value=14 Score=31.34 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=47.0
Q ss_pred EEEEEEecCCcEEEEEec--CCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCChhhhccccccCCCEEEEeeecCCC
Q 004798 19 IEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVd--psdTV~dLKekIaektGIP-peqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+| +|+.+. +. ...||.+|.+.+ +++ ++..-+.++|+.+..+ ...++-|++|+.|.++--..++
T Consensus 1 M~I~v---NGe~~e--~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPST--VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEEE--CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEEE--cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 45544 567554 44 568999887754 677 7777788999887433 4566789999999998766554
No 238
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=61.46 E-value=0.44 Score=41.78 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl 144 (730)
.+++.+.+.|+++.++..||..+. +.|++++++||+|.--
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 55 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 55 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 456778899999999999999988 9999999999998633
No 239
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=59.90 E-value=17 Score=29.16 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.7
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 26 L~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
++|+.+.+ ...||.+|.+.+ +++++...+..+|+.+..+ ...++-+++|+.|.++-..
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 36776654 568999998877 4566667778888877533 3445678999999988643
No 240
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=57.59 E-value=31 Score=35.60 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=43.2
Q ss_pred EEEec-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eecCC-hhhhccccc
Q 004798 22 KIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVLKD-DQLLSAYHV 79 (730)
Q Consensus 22 tVKtL-~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkG-KvLkD-dkTLsdYGI 79 (730)
.+..+ .-....+.+.+..|+.+||++|++.++++++.|.|+|.+ ++..+ ......|.-
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 314 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred EEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 34333 345567888999999999999999999999999999998 44333 344445543
No 241
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.60 E-value=0.53 Score=43.67 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=32.3
Q ss_pred CCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 Grtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
+..+...+.++.+|.+||..+. ..++|+++|||||+
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 4556788999999999999998 88999999999987
No 242
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.67 E-value=19 Score=28.75 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=39.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|.|+|+..+|+. +++....|+.+|-+.|..... ....-...+|+...- ++-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 567777777876 456678999999888743221 111223457775543 366778888887753
No 243
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=50.35 E-value=15 Score=42.52 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-ecCChhhhccc
Q 004798 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (730)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGK-vLkDdkTLsdY 77 (730)
..+.+.+.+.++.|+.+||..|++.++|+++.|.|++... .+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3566778999999999999999999999999999998854 45555555554
No 244
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=48.70 E-value=24 Score=31.77 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=37.3
Q ss_pred cEEEEEEecC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCC
Q 004798 18 TIEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRG 65 (730)
Q Consensus 18 tMqItVKtL~-------GKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIFkG 65 (730)
.|+|+|...+ +..+.|-|.++.+..+|..+|.++++++. ...+|-|+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 3888888753 45789999999999999999999988652 224676765
No 245
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.70 E-value=6 Score=34.02 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=31.4
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+......+.+++||..||.+|+ .-|+|+..|+|.+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 34556678889999999999999 89999999999753
No 246
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=45.48 E-value=0.9 Score=37.47 Aligned_cols=38 Identities=3% Similarity=-0.082 Sum_probs=33.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|+++.++..++.... +.|+++.++||+|.
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 456777889999999999999888 89999999999886
No 247
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.27 E-value=28 Score=38.95 Aligned_cols=77 Identities=10% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCCcEEEEEEecCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C--eecC-Chhhhccc--cc
Q 004798 15 SETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G--KVLK-DDQLLSAY--HV 79 (730)
Q Consensus 15 s~stMqItVKtL~G--Kt~t----LeVdpsdTV~dLKekIaektGIPpeqQRLIFk----G--KvLk-DdkTLsdY--GI 79 (730)
....+-|++|.-|- +++. +-|+.+.+|.+|-..|.++.|+|++.--++|. + ..|+ .+.||.++ .|
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL 206 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDEL 206 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTC
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcc
Confidence 44569999998863 4443 57889999999999999999999976555554 2 3466 57899999 99
Q ss_pred cCCCEEEEeeec
Q 004798 80 EDGHTLHMVVRQ 91 (730)
Q Consensus 80 qdGSTLhLVlRl 91 (730)
.+|++|.+=...
T Consensus 207 ~~GdII~fQ~~~ 218 (530)
T 2ylm_A 207 MDGDIIVFQKDD 218 (530)
T ss_dssp CTTEEEEEEECC
T ss_pred cCCCEEEEEecC
Confidence 999998776543
No 248
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=44.24 E-value=67 Score=26.59 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=38.5
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCChhhhccccccCCCEEEEeeec
Q 004798 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektG------I-----PpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
++++...||.+|.+.+..++. + ......+..+|+.+... .-.++-|++|+.|.++-..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCC
Confidence 456556899999999987742 1 01345677788766422 2235679999999887543
No 249
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=43.68 E-value=8.8 Score=35.30 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=54.9
Q ss_pred CCCCCc--EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEeCC---eecCChhhhccccccCCCEE
Q 004798 13 ESSETT--IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLICRG---KVLKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 13 e~s~st--MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe--qQRLIFkG---KvLkDdkTLsdYGIqdGSTL 85 (730)
...+.. ++|+|..++ ...+++|..+.-|..|.-+|-++..++.+ +--|-..- .+|+-..||..|||+.++.|
T Consensus 19 ~~~d~SWeL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L 97 (112)
T 2lgx_A 19 CYADGTWELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKL 97 (112)
T ss_dssp SSSSSCCCEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBB
T ss_pred ccccCcEEEEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccc
Confidence 334444 566665554 77889999999999999999988776542 22333222 25788899999999999988
Q ss_pred EEeee
Q 004798 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
++.-.
T Consensus 98 ~ftp~ 102 (112)
T 2lgx_A 98 QFTPQ 102 (112)
T ss_dssp CBBC-
T ss_pred eecCC
Confidence 87643
No 250
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=42.53 E-value=16 Score=40.84 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=29.1
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004798 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (730)
Q Consensus 32 tLeVdpsdTV~dLKekIaektGIPpeqQRLI 62 (730)
.++|..++|+.+||++|++.+|+++++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 5789999999999999999999999999985
No 251
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=42.53 E-value=38 Score=31.85 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----CC--hhhhccccccCCCEEEEee
Q 004798 37 KQVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 37 psdTV~dLKekIaektGIPpeqQRLIF--kGKvL-----kD--dkTLsdYGIqdGSTLhLVl 89 (730)
...|+.+|-+.|..++|+.. +.-++- ..+.| +| +++|.++||++|+.|.++=
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 35799999888988999863 444432 23444 22 4899999999999988764
No 252
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=42.23 E-value=58 Score=30.28 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=50.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCe--ecCChhhhccccccCCCEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe------qQRLI---FkGK--vLkDdkTLsdYGIqdGSTL 85 (730)
..+-..|-..+...+++.+....|+.+|+..++++.+...+ .+.|+ +.|. +|+++..--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 34667777777777889999999999999999999987554 67664 6774 4555433222223334566
Q ss_pred EEeee
Q 004798 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
++..|
T Consensus 88 fvc~k 92 (120)
T 2dhz_A 88 FACTR 92 (120)
T ss_dssp EEECT
T ss_pred EEeeh
Confidence 66655
No 253
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=42.19 E-value=1.7 Score=37.91 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl 144 (730)
.+|+.+.+.|+++.++..|+.... +.|++++++||+|.--
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 53 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 53 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 456778899999999999999888 8999999999998633
No 254
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=41.80 E-value=55 Score=28.84 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCcEEEEEEecCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 004798 16 ETTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (730)
Q Consensus 16 ~stMqItVKtL~GKt~-tLeVd-psdTV~dLKekIaektGIPpeqQRL 61 (730)
..+..|+-|+...+.+ .+.++ ...+|.+||.+|..+.++...+.-|
T Consensus 4 ~~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 4 GSMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp TTBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred cceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 3456678888776554 47777 5689999999999988775544433
No 255
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=41.20 E-value=1.3e+02 Score=27.27 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEE--EeCCeecCChhhhccccccCCCEEEEee
Q 004798 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 14 ~s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpe--qQRL--IFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
.....=-++|+..+.+. ..-|- -.+..+|+.|..++++++.. ..+| ...|..++|+.-+..+ ...|+.+++
T Consensus 14 ~~~~~kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL 88 (100)
T 1f2r_I 14 DVRPLKPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVAL 88 (100)
T ss_dssp TSCCCEEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEE
T ss_pred cCCCCCCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEE
Confidence 33333445666433333 43332 34799999999999999652 3444 4568888776544332 245555555
Q ss_pred ec
Q 004798 90 RQ 91 (730)
Q Consensus 90 Rl 91 (730)
..
T Consensus 89 ~~ 90 (100)
T 1f2r_I 89 AC 90 (100)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 256
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=40.71 E-value=30 Score=30.86 Aligned_cols=59 Identities=8% Similarity=0.240 Sum_probs=41.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecCC------hhhhccccccCCCEEEEe
Q 004798 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLKD------DQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpe-----------qQRLIFkG-KvLkD------dkTLsdYGIqdGSTLhLV 88 (730)
...++|++++|+.+|-+.+.+.-.+-.. ...|++.. ..|+. +++|.++|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568899999999999999885332211 23444444 23432 477999999999999884
No 257
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=40.03 E-value=0.99 Score=38.07 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=33.0
Q ss_pred CCCC-CcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGr-titl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+ .+.+.|+++.++..|+.... +.|++++++||+|.
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 4565 67899999999999999888 89999999999885
No 258
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=38.72 E-value=56 Score=36.17 Aligned_cols=47 Identities=4% Similarity=0.063 Sum_probs=40.3
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEe
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLIC 63 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF 63 (730)
..|.+.|..++|....+.|+...|+.+|-+.|.++.|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4588999999999999999999999999999999999974 3344544
No 259
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=34.89 E-value=73 Score=28.25 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=50.0
Q ss_pred CcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHH--Hh-CCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIAS--VT-GVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 stMqItVKtL~---GKt~tLeVdpsdTV~dLKekIae--kt-GIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.+|+|.|...- .+.+.+++....||.++-+..-- .+ .|......+..+|+..+ .++-+++|+.|.++-.
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 46777776543 23456788899999998887643 22 34555677888888776 4566899999999865
Q ss_pred cC
Q 004798 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
+.
T Consensus 86 l~ 87 (97)
T 2hj1_A 86 LL 87 (97)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 260
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=34.68 E-value=3.6 Score=37.26 Aligned_cols=38 Identities=3% Similarity=-0.013 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHH
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+++.+.+.|.++.++..|+.... +.|++++++||+|.
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 356778899999999999999888 89999999999985
No 261
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=34.11 E-value=14 Score=30.79 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=36.1
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCChhhhccccccCCCEEEEeee
Q 004798 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+++....||.+|.+.+ +++.+...+..+|+.+..+ +-|++|+.|.++-.
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~pp 73 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcc
Confidence 4556678999998765 4666777788899888654 66888888877643
No 262
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=33.91 E-value=2.4e+02 Score=24.85 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=54.2
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHHh-C--CCC--CCeEEEeCCee--cCChhhhccccccCCCEEEEee
Q 004798 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVT-G--VLS--EQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtL~GK-t~tLeVdpsdTV~dLKekIaekt-G--IPp--eqQRLIFkGKv--LkDdkTLsdYGIqdGSTLhLVl 89 (730)
+-|..++.+.- ..-+.|+..+|+.++-+|++... | +.+ .-.|..++|.. |.++.|+++-||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 44555554332 24468999999999999998754 3 322 35788899987 9999999999999999988875
No 263
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=32.84 E-value=2.3 Score=36.95 Aligned_cols=40 Identities=3% Similarity=-0.124 Sum_probs=33.9
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhhh
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl~ 145 (730)
+++.+.+.|.++.++..|+.... +.|++++++||+|.--.
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 45667789999999999999888 89999999999986433
No 264
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.51 E-value=97 Score=27.49 Aligned_cols=67 Identities=10% Similarity=0.213 Sum_probs=44.1
Q ss_pred EEEEEEecCC-cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCChhhhccccccCCCEEEEeeec
Q 004798 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtL~G-Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--kGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
--++|+..+. +++-|-. .+..+|+.|..+++.++....+|+. +|..++|+.-+..+ +..|+.+++..
T Consensus 10 kpfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 3455555442 3344433 4799999999999999765666654 58888887655444 35677777664
No 265
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=32.19 E-value=1.5e+02 Score=26.12 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=48.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--CCC---CCeEEEeCC--eecCChhhhccccccCCCEEEEeee
Q 004798 31 YTLRVDKQVPVPALKEQIASVT-G--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaekt-G--IPp---eqQRLIFkG--KvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.-+.|+..+|+.++-++++... | +.+ .-.|..++| +.|..+.|+++-||+.-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4468999999999999998753 3 322 246788999 8999999999999999998887653
No 266
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.71 E-value=4.5 Score=36.13 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhh
Q 004798 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl 144 (730)
.+++.+.+.|.++.++..|+.... +.|++++++||+|.--
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~ 72 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 72 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSS
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCE
Confidence 356677899999999999999888 8999999999998633
No 267
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=28.80 E-value=2.2e+02 Score=25.03 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=46.8
Q ss_pred CCcEEEEEEecCCcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CChhhh-ccccccCCCEEEE
Q 004798 16 ETTIEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLL-SAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~stMqItVKtL~GKt~tLeVd--psdTV~dLKekIaektGIPpeqQRLIFkG---KvL--kDdkTL-sdYGIqdGSTLhL 87 (730)
...++|+.|. +.....+.++ ...+.++|+.+++....++.....|.|.. -.| .++..| ..+..... .|.|
T Consensus 4 ~~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~p-lLRl 81 (86)
T 1wmh_B 4 MSIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP-PLRL 81 (86)
T ss_dssp -CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS-CEEE
T ss_pred CCEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhCCC-cEEE
Confidence 3557777777 5555556665 45899999999999999877777887764 333 344333 23333322 6666
Q ss_pred eee
Q 004798 88 VVR 90 (730)
Q Consensus 88 VlR 90 (730)
++.
T Consensus 82 ~Iq 84 (86)
T 1wmh_B 82 LVQ 84 (86)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 268
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=28.64 E-value=1.8e+02 Score=30.20 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCChhhhcc----ccccCCCEE
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA----YHVEDGHTL 85 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk-------GKvLkDdkTLsd----YGIqdGSTL 85 (730)
..+-|+|-..+|....|.|++++|+.+|-+.+..+.++....-..+|. -+.|+|...|.+ ........|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 345677777789999999999999999999999888765544333332 267888766544 344455565
Q ss_pred EEe
Q 004798 86 HMV 88 (730)
Q Consensus 86 hLV 88 (730)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 269
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.52 E-value=5.5 Score=35.91 Aligned_cols=40 Identities=5% Similarity=-0.074 Sum_probs=34.1
Q ss_pred CCCCcccccccCCchhccccccc-CCCCCcchhHHHHHhhh
Q 004798 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (730)
Q Consensus 106 tGrtitl~V~pSdTI~~VK~~Iq-~EGIPpdqQRLIfavl~ 145 (730)
+|+.+.+.|+++.++..|+.... +.|++++++||+|.--.
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~r 79 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 79 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeE
Confidence 46677889999999999999888 89999999999986433
No 270
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=23.37 E-value=78 Score=32.42 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=38.7
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCChhhhcc
Q 004798 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA 76 (730)
Q Consensus 19 MqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk-------GKvLkDdkTLsd 76 (730)
.-|+|-..+|....|.|++++|+.+|-+.+..+.++..+.-..+|. -+.|+|...+-+
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 3556666788999999999999999999998887765444444432 267788765544
No 271
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.36 E-value=98 Score=35.60 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004798 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (730)
Q Consensus 17 stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPp 56 (730)
..|.+.|..++|....+.|+..+|+.+|-+.|+.+.|+..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 4589999999999999999999999999999999998753
No 272
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=22.66 E-value=1.3e+02 Score=27.35 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=49.9
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhC-CC-------CCCeEEEe---CCe--ecCCh-hhhcccccc
Q 004798 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VL-------SEQQRLIC---RGK--VLKDD-QLLSAYHVE 80 (730)
Q Consensus 15 s~stMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektG-IP-------peqQRLIF---kGK--vLkDd-kTLsdYGIq 80 (730)
.+..+.|.+-..+|-.+.+++..+.|+.+||+.+-+... .| ++.-.+.+ .|. .|.|+ +.|.|+...
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 346677888888999999999999999999999866532 22 12222222 122 46555 788887765
Q ss_pred CCCEEEEeee
Q 004798 81 DGHTLHMVVR 90 (730)
Q Consensus 81 dGSTLhLVlR 90 (730)
-..|.|+-|
T Consensus 96 -~piLklver 104 (108)
T 2v1y_A 96 -QPFLKVIEP 104 (108)
T ss_dssp -SSEEEEECC
T ss_pred -ceEEEEEee
Confidence 455655544
No 273
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=22.41 E-value=2.5e+02 Score=24.81 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=52.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCChhhhccccccCCCEEEEeeecCC
Q 004798 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFk-GKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
..+.|........+-+-.++++++|+..--+|.+ |--+...++-...-++.|+.|.|+-|-+-
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 3468888888888888999999999988877765 66677788888888999999999987654
No 274
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.84 E-value=1.6e+02 Score=28.86 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=41.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE--eC----CeecCChhh
Q 004798 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI--CR----GKVLKDDQL 73 (730)
Q Consensus 18 tMqItVKtL~GKt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLI--Fk----GKvLkDdkT 73 (730)
.+.|.|-..+|....+.|++.+|+.+|-+.+.++.++..+.. .|+ +. -+.|+|+..
T Consensus 34 k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~ 96 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHEN 96 (291)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSB
T ss_pred ceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchh
Confidence 456677777889999999999999999999999999876443 332 11 146777644
No 275
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.49 E-value=1.5e+02 Score=26.19 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=34.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004798 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (730)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIFkGKv 67 (730)
.++.|.|++..+=.++|+.|+..+++.+..-+ |+..||.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 68999999999999999999999999997764 5677764
No 276
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=21.35 E-value=3.6e+02 Score=23.58 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=45.3
Q ss_pred CCCcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec-CChhhhcc----ccccCCCEE
Q 004798 15 SETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL-KDDQLLSA----YHVEDGHTL 85 (730)
Q Consensus 15 s~stMqItVKtL~G----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIFkGKvL-kDdkTLsd----YGIqdGSTL 85 (730)
....+.|..|..+. ++-.+.|..+.|+.+|...|.++.++ +..-|..+...+ ..+.++++ |+ ++..|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~L 80 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDEL 80 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEE
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEE
Confidence 34556777666432 23456788999999999999999988 556666676543 44545443 34 45566
Q ss_pred EEee
Q 004798 86 HMVV 89 (730)
Q Consensus 86 hLVl 89 (730)
++..
T Consensus 81 yv~Y 84 (91)
T 3w1s_C 81 IVSY 84 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 277
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=20.82 E-value=1.4e+02 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004798 277 LAEVMQSTRQMLIEQSAECLHQLARQLEN 305 (730)
Q Consensus 277 L~~v~~~t~qll~~~a~~~Ls~la~qL~~ 305 (730)
.+..+..-+..++.+ +.+|++|..||.|
T Consensus 11 v~~AL~KiQ~VVN~q-~~aL~~Lt~QL~n 38 (38)
T 2beq_A 11 TSTALGKLQDVVNQN-AQALNTLVKQLSX 38 (38)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhcC
Confidence 345566667777888 8999999999864
Done!