BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004800
(730 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 630 RLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEE 689
+D D +SYEELLAL + +G S GL+ +TI + KRY + + ++E C IC+ +
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIAS-LPSKRYKEGDNQNGTNE-SCVICRLD 294
Query: 690 YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 723
Y D ++L +L C H +H+ CI WL +CP+C
Sbjct: 295 YEDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 637 SYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL----------EIEIPSDEEPCCIC 686
SYEELL LE+R+G+V+ G + TI + +Y E E +E C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 687 QEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725
DG+++ L C H FH C+ QWL CPIC+
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 637 SYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL----------EIEIPSDEEPCCIC 686
SYEELL LE+R+G+V+ G + TI + +Y E E +E C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 687 QEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725
DG+++ L C H FH C+ QWL CPIC+
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 631 LDVDNMSYEELLALEERIGDVSTGLNEETIMKI-MKQKRYPSLEIEIPSDEEPCCICQEE 689
+D D M+YEEL+ L E +G S GL++E I + K+ ++ S+ E C ICQ +
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSI-FSRKRAGERCVICQLK 203
Query: 690 YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725
Y G+ L C H +H+ CI +WL +CP+C +
Sbjct: 204 YKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNS 239
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 629 MRLDVDNM---SYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIPSDEEPCC 684
+ LDVD++ +YE LL L ER+GD GL + I ++ + P S++ C
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQ---SEQTLCV 381
Query: 685 ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
+C ++ L +L C H+FHT C+ +WL CPIC+
Sbjct: 382 VCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIP---------SDEEPCCICQE 688
+EEL+ LEER+G+V+ G ++ TI + +Y ++ EE C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 689 EYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725
+G+++ L C H FH C+ QWL+ CPIC+
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 976
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 681
+EEL+ LEER+G+V+ G ++ TI + +Y + + S +
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 682 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 730
C IC +G+++ L C H FH C+ QWL+ CPIC+ T LPT
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 957
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 681
+EEL+ LEER+G+V+ G ++ TI + +Y + + S +
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 682 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 730
C IC +G+++ L C H FH C+ QWL+ CPIC+ T LPT
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 965
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 681
+EEL+ LEER+G+V+ G ++ TI + +Y + + S +
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 682 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 730
C IC +G+++ L C H FH C+ QWL+ CPIC+ T LPT
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 952
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 681
+EEL+ LEER+G+V+ G ++ TI + +Y + + S +
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 682 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 730
C IC +G+++ L C H FH C+ QWL+ CPIC+ T LPT
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 921
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 629 MRLDVDNM---SYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIPSDEEPCC 684
+ LDVD++ +YE LL L ER+GD GL + I ++ + P S++ C
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQ---SEQTLCV 356
Query: 685 ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
+C ++ L +L C H+FH C+ +WL CPIC+
Sbjct: 357 VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 396
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 681
+EEL+ LEER+G+V+ G ++ TI + +Y + + S +
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 682 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725
C IC +G+++ L C H FH C+ QWL+ CPIC+
Sbjct: 935 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 979
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 638 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 681
+EEL+ LEER+G+V+ G ++ TI + +Y + + S +
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 682 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725
C IC +G+++ L C H FH C+ QWL+ CPIC+
Sbjct: 940 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 984
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 614 FIYHGL-AEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL 672
+++ GL E H + L DN YE+LLAL +G + +K +
Sbjct: 697 YVFGGLFPEHHPVLSTVSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVK-RSGGLFAYF 755
Query: 673 EIEIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQ-KNLCPICKTTGLPT 730
+ S + C IC E YT+GD L C H FH CI QWL N CP+C+ G+ T
Sbjct: 756 DDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTT 815
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 629 MRLDVDNM---SYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIPSDEEPCC 684
+ LDVD++ +YE LL L ER+GD GL + I ++ + P S++ C
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQ---SEQTLCV 299
Query: 685 ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
+C ++ L +L C H+FH C+ +WL CPIC+
Sbjct: 300 VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 629 MRLDVDNM---SYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIP---SDEE 681
+ LDVD++ +YE LL L ER+G+ GL + I ++ PS + S++
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQL------PSYRFNLENHQSEQT 394
Query: 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
C +C ++ L +L C H+FH C+ +WL CPIC+
Sbjct: 395 LCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 636 MSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDN 695
+S + L E D GL +E I + + + ++ C +C EYT+G+
Sbjct: 544 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKT------CSVCITEYTEGNK 597
Query: 696 LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
L L C H++H +CI +WL + + CPIC+ L
Sbjct: 598 LRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 636 MSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDN 695
+S + L E D GL +E I + + + ++ C +C EYT+G+
Sbjct: 662 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNYGENDALKT------CSVCITEYTEGNK 715
Query: 696 LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
L L C H++H +CI +WL + + CPIC+ L
Sbjct: 716 LRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 636 MSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDN 695
+S + L E D GL +E I + + + ++ C +C EYT+G+
Sbjct: 529 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMRSFGENDALKT------CSVCITEYTEGNK 582
Query: 696 LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
L L C H++H +CI +WL + + CPIC+ L
Sbjct: 583 LRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
C +C EYT+G+ L L C H++H +CI +WL + + CPIC+ L
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 591
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 629 MRLDVDN---MSYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIPSDEEPCC 684
LDV++ +YE LL L ER+G+ GL + I ++ + PS S++ C
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQ---SEQTLCV 467
Query: 685 ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
+C ++ L +L C H+FH C+ +WL CPIC+
Sbjct: 468 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICR 507
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 725
K+ P + + + + C IC EEY DGD L IL C H +H C+ WL + K CP+CK
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 726 TGLPT 730
+P+
Sbjct: 284 KVVPS 288
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 636 MSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDN 695
+S + L E D GL +E I + + + ++ C +C EYT+G+
Sbjct: 527 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKT------CSVCITEYTEGNK 580
Query: 696 LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
L L C H++H +CI +WL + + CPIC+ L
Sbjct: 581 LRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 725
K+ P + + + + C IC EEY DGD L IL C H +H C+ WL + K CP+CK
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 726 TGLPT 730
+P+
Sbjct: 284 KVVPS 288
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICK 724
K+ P+ + + + + C IC +EY DGD L IL C H +H+ C+ WL Q + CPICK
Sbjct: 214 KQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 629 MRLDVDN---MSYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIPSDEEPCC 684
LDV++ +YE LL L ER+G+ GL + I ++ + P+ S++ C
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQ---SEQTLCV 464
Query: 685 ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
+C ++ L +L C H+FH C+ +WL CPIC+
Sbjct: 465 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 504
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICK 724
K+ P+ + + + + C IC +EY DGD L +L C H +H+ C+ WL Q + CPICK
Sbjct: 214 KQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 725
K+ P + + + + C IC +EY DGD L IL C H +H C+ WL + K CP+CK
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 726 TGLPT 730
+P+
Sbjct: 284 KVVPS 288
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 725
K+ P + + + + C IC +EY DGD L IL C H +H C+ WL + K CP+CK
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 726 TGLPT 730
+P+
Sbjct: 284 KVVPS 288
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 725
K+ P + + + + C IC +EY DGD L IL C H +H C+ WL + K CP+CK
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 726 TGLPT 730
+P+
Sbjct: 284 KVVPS 288
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 725
K+ P + + + + C IC +EY DGD L IL C H +H C+ WL + K CP+CK
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 726 TGLPT 730
+P+
Sbjct: 284 KVVPS 288
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICK 724
K+ P+ + + + C IC +EY DGD L +L C H +H+ C+ WL Q + CPICK
Sbjct: 214 KQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 655 LNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL 714
+ ++ IMKI + S E ++ SD C IC E Y D + IL C H+FH NCI WL
Sbjct: 277 VTKKAIMKIPTKTGKFSDEKDLDSD--CCAICIEAYKPTDTIRILPCKHEFHKNCIDPWL 334
Query: 715 MQKNLCPICKTTGL 728
++ CP+CK L
Sbjct: 335 IEHRTCPMCKLDVL 348
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 723
C IC EE+++G L ++ C H+FH NC+ WL Q CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 613 PFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEE---TIMKIMKQKRY 669
P I L + D+ + D++ ++ + ++GD + N+E T IM +
Sbjct: 283 PCIIAVLYAVADQEGASKEDIEQLTKFKF----RKLGDANKHTNDEAQGTTEGIMTECGT 338
Query: 670 PS-LEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
S +E + ++ CCIC Y DG L L CGH FH +C+ +WL CP+CK L
Sbjct: 339 DSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNIL 398
Query: 729 PT 730
+
Sbjct: 399 KS 400
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
C IC E+Y DG+ L ++ C H FH C+ WL+Q + CP C+
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 334
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
C IC E+Y DG+ L ++ C H FH C+ WL+Q + CP C+
Sbjct: 290 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 331
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 723
C IC EE+++G L ++ C H+FH C+ WL Q CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLC 312
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
+ +++ CCIC Y DG L L C H FH+ CI +WL + CP+CK L
Sbjct: 300 LLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNIL 352
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 730
E CCIC+E GD + L C H FH C+K WL + N CPIC+ LPT
Sbjct: 227 EAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE-LPT 276
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
C IC E+Y DG+ L ++ C H FH C+ WL+Q + CP C+
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCR 308
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
C IC E+Y DG+ L ++ C H FH C+ WL+Q + CP C+
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 307
>sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2
Length = 1208
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
PC IC E + +NL +L C H FH CI+ WLMQ+ CP C+ L
Sbjct: 1147 PCVICHENLS-PENLSVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVL 1192
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 644 LEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGH 703
+E+ G + E ++ MK ++ P E+ +E C IC E + D++ L C H
Sbjct: 360 MEQAQGHNAPAPAPEDVIAKMKVQKPPK---ELIDEEGECTICMEMFKINDDVIQLPCKH 416
Query: 704 DFHTNCIKQWLMQKNLCPICK 724
FH NCIK WL C IC+
Sbjct: 417 YFHENCIKPWLRVNGTCAICR 437
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
C IC E+Y DG+ L ++ C H FH C+ WL+Q + CP C+
Sbjct: 202 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 243
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
PC IC E + +NL +L C H FH+ CI+ WLMQ+ CP C+ L
Sbjct: 1143 PCVICHENLS-PENLSVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVL 1188
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
P D E CCIC EY DG L L C H FH CI +WL + CP+CK L
Sbjct: 333 PEDAE-CCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNIL 383
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 675 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724
EI D + C +C E Y D + IL C H FH C+ WL++ CP+CK
Sbjct: 269 EIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 675 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
EI D + C +C E Y D + IL C H FH C+ WL++ CP+CK L
Sbjct: 269 EIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDIL 322
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 675 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728
EI D + C +C E Y D + IL C H FH C+ WL++ CP+CK L
Sbjct: 269 EIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDIL 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,827,450
Number of Sequences: 539616
Number of extensions: 12389515
Number of successful extensions: 34897
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 362
Number of HSP's that attempted gapping in prelim test: 31371
Number of HSP's gapped (non-prelim): 2050
length of query: 730
length of database: 191,569,459
effective HSP length: 125
effective length of query: 605
effective length of database: 124,117,459
effective search space: 75091062695
effective search space used: 75091062695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)