Query 004800
Match_columns 730
No_of_seqs 266 out of 1812
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.4 1.8E-13 4E-18 147.4 4.3 49 681-729 230-279 (348)
2 PF13639 zf-RING_2: Ring finge 99.3 3.2E-13 7E-18 104.6 2.3 44 681-724 1-44 (44)
3 COG5540 RING-finger-containing 99.1 8.2E-11 1.8E-15 123.7 3.8 50 680-729 323-373 (374)
4 PHA02929 N1R/p28-like protein; 99.0 1.7E-10 3.8E-15 119.5 5.5 51 678-728 172-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.0 2E-10 4.3E-15 98.9 4.6 46 679-724 18-73 (73)
6 KOG0317 Predicted E3 ubiquitin 99.0 1.3E-10 2.9E-15 121.8 3.7 52 675-729 234-285 (293)
7 COG5243 HRD1 HRD ubiquitin lig 99.0 3.6E-10 7.8E-15 121.5 4.2 52 676-727 283-344 (491)
8 PLN03208 E3 ubiquitin-protein 98.9 9.4E-10 2E-14 110.6 5.1 48 678-728 16-79 (193)
9 KOG0823 Predicted E3 ubiquitin 98.9 6.9E-10 1.5E-14 113.6 3.4 49 677-728 44-95 (230)
10 KOG0320 Predicted E3 ubiquitin 98.8 1.8E-09 3.9E-14 106.8 3.7 56 672-728 123-178 (187)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.6E-09 1E-13 79.7 3.2 39 683-723 1-39 (39)
12 PF13920 zf-C3HC4_3: Zinc fing 98.8 4.7E-09 1E-13 83.6 3.3 46 680-728 2-48 (50)
13 cd00162 RING RING-finger (Real 98.8 7.1E-09 1.5E-13 77.7 3.9 44 682-727 1-45 (45)
14 smart00504 Ubox Modified RING 98.7 2.5E-08 5.4E-13 81.8 4.6 45 681-728 2-46 (63)
15 PF15227 zf-C3HC4_4: zinc fing 98.7 1.6E-08 3.5E-13 78.6 3.1 38 683-723 1-42 (42)
16 KOG0802 E3 ubiquitin ligase [P 98.6 1.1E-08 2.4E-13 117.3 1.4 52 677-728 288-341 (543)
17 PHA02926 zinc finger-like prot 98.6 3.7E-08 8.1E-13 100.7 3.6 51 677-727 167-229 (242)
18 PF14634 zf-RING_5: zinc-RING 98.6 5.7E-08 1.2E-12 75.7 3.6 44 682-725 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.5 6E-08 1.3E-12 73.7 3.2 39 683-723 1-41 (41)
20 TIGR00599 rad18 DNA repair pro 98.5 5E-08 1.1E-12 107.9 3.8 49 677-728 23-71 (397)
21 PF12861 zf-Apc11: Anaphase-pr 98.5 7.1E-08 1.5E-12 85.7 3.8 49 679-727 20-81 (85)
22 smart00184 RING Ring finger. E 98.5 1.4E-07 2.9E-12 68.3 3.6 38 683-723 1-39 (39)
23 COG5574 PEX10 RING-finger-cont 98.4 1E-07 2.3E-12 99.4 2.6 49 678-729 213-263 (271)
24 KOG0287 Postreplication repair 98.2 4E-07 8.7E-12 97.6 1.6 47 679-728 22-68 (442)
25 COG5432 RAD18 RING-finger-cont 98.2 6.4E-07 1.4E-11 94.5 2.5 46 678-726 23-68 (391)
26 COG5194 APC11 Component of SCF 98.2 1.2E-06 2.5E-11 77.0 3.6 48 680-727 20-80 (88)
27 KOG2164 Predicted E3 ubiquitin 98.2 7.9E-07 1.7E-11 99.8 2.6 47 680-729 186-237 (513)
28 KOG1734 Predicted RING-contain 98.1 5.7E-07 1.2E-11 94.1 0.9 51 677-727 221-280 (328)
29 PF04564 U-box: U-box domain; 98.1 1.5E-06 3.3E-11 74.7 2.9 46 680-728 4-50 (73)
30 KOG2177 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 87.0 1.8 45 677-724 10-54 (386)
31 KOG0828 Predicted E3 ubiquitin 98.0 2E-06 4.3E-11 95.9 2.2 53 677-729 568-635 (636)
32 PF13445 zf-RING_UBOX: RING-ty 98.0 2.8E-06 6.2E-11 66.7 2.3 38 683-721 1-43 (43)
33 smart00744 RINGv The RING-vari 97.9 9.5E-06 2E-10 65.2 3.6 42 682-724 1-49 (49)
34 KOG4265 Predicted E3 ubiquitin 97.8 9.4E-06 2E-10 88.1 2.7 49 678-729 288-337 (349)
35 KOG1493 Anaphase-promoting com 97.8 5.9E-06 1.3E-10 72.1 0.0 51 677-727 17-80 (84)
36 COG5219 Uncharacterized conser 97.7 9.9E-06 2.1E-10 95.6 1.4 53 676-728 1465-1523(1525)
37 PF11793 FANCL_C: FANCL C-term 97.7 8.7E-06 1.9E-10 69.9 -0.1 49 680-728 2-66 (70)
38 KOG2930 SCF ubiquitin ligase, 97.6 3E-05 6.5E-10 71.2 2.3 51 676-726 42-106 (114)
39 KOG0311 Predicted E3 ubiquitin 97.6 8.9E-06 1.9E-10 88.1 -1.3 48 679-728 42-90 (381)
40 KOG0825 PHD Zn-finger protein 97.5 1.7E-05 3.6E-10 92.3 -0.7 51 679-729 122-172 (1134)
41 KOG4172 Predicted E3 ubiquitin 97.5 2.6E-05 5.6E-10 64.2 0.3 46 680-728 7-54 (62)
42 KOG1039 Predicted E3 ubiquitin 97.5 5.4E-05 1.2E-09 82.9 2.1 50 678-727 159-220 (344)
43 KOG4445 Uncharacterized conser 97.4 6.3E-05 1.4E-09 80.1 1.8 53 676-728 111-186 (368)
44 KOG0978 E3 ubiquitin ligase in 97.3 0.00014 3E-09 85.4 3.9 46 680-728 643-689 (698)
45 KOG4275 Predicted E3 ubiquitin 97.3 0.00028 6E-09 75.1 5.1 90 631-728 247-342 (350)
46 PF14835 zf-RING_6: zf-RING of 97.2 5.8E-05 1.3E-09 64.1 -0.5 43 681-728 8-51 (65)
47 KOG4159 Predicted E3 ubiquitin 97.2 0.00024 5.1E-09 79.3 3.5 48 678-728 82-129 (398)
48 KOG0804 Cytoplasmic Zn-finger 97.2 0.00017 3.7E-09 80.3 1.9 49 679-729 174-223 (493)
49 KOG4692 Predicted E3 ubiquitin 97.1 0.00036 7.7E-09 75.9 3.1 49 677-728 419-467 (489)
50 KOG2879 Predicted E3 ubiquitin 97.0 0.00072 1.6E-08 71.6 4.4 51 676-728 235-287 (298)
51 KOG1785 Tyrosine kinase negati 97.0 0.00027 5.9E-09 77.7 1.2 46 681-729 370-417 (563)
52 PF11789 zf-Nse: Zinc-finger o 96.8 0.00072 1.6E-08 56.2 2.1 42 679-722 10-53 (57)
53 KOG0297 TNF receptor-associate 96.8 0.00061 1.3E-08 75.9 2.0 49 677-728 18-67 (391)
54 KOG2660 Locus-specific chromos 96.6 0.00068 1.5E-08 73.4 0.9 50 677-728 12-61 (331)
55 KOG1428 Inhibitor of type V ad 96.6 0.0013 2.8E-08 80.7 3.1 52 676-727 3482-3543(3738)
56 COG5152 Uncharacterized conser 96.5 0.0012 2.6E-08 67.1 2.0 43 681-726 197-239 (259)
57 KOG1941 Acetylcholine receptor 96.3 0.0012 2.6E-08 72.6 0.8 46 680-725 365-413 (518)
58 KOG1002 Nucleotide excision re 96.3 0.0018 3.9E-08 73.5 1.6 48 677-727 533-585 (791)
59 KOG1814 Predicted E3 ubiquitin 96.2 0.0029 6.3E-08 70.3 2.5 46 680-725 184-237 (445)
60 KOG1813 Predicted E3 ubiquitin 96.1 0.0026 5.7E-08 68.0 1.7 44 681-727 242-285 (313)
61 COG5222 Uncharacterized conser 96.0 0.0037 8E-08 67.0 2.2 43 680-725 274-318 (427)
62 KOG2114 Vacuolar assembly/sort 95.8 0.0064 1.4E-07 72.5 3.3 43 679-726 839-881 (933)
63 KOG3039 Uncharacterized conser 95.6 0.0097 2.1E-07 62.5 3.6 50 679-728 220-270 (303)
64 KOG0801 Predicted E3 ubiquitin 95.6 0.0036 7.8E-08 62.0 0.3 35 673-707 170-204 (205)
65 KOG3970 Predicted E3 ubiquitin 95.6 0.009 2E-07 62.0 3.0 48 681-729 51-106 (299)
66 KOG2034 Vacuolar sorting prote 95.3 0.0062 1.3E-07 73.0 1.1 38 677-715 814-851 (911)
67 PHA03096 p28-like protein; Pro 95.1 0.0098 2.1E-07 64.0 1.8 45 681-725 179-231 (284)
68 PF05883 Baculo_RING: Baculovi 95.1 0.0088 1.9E-07 57.8 1.3 36 680-715 26-67 (134)
69 KOG1571 Predicted E3 ubiquitin 95.1 0.011 2.3E-07 65.1 2.0 43 679-727 304-346 (355)
70 PF14570 zf-RING_4: RING/Ubox 95.0 0.02 4.4E-07 46.3 2.8 44 683-726 1-46 (48)
71 COG5236 Uncharacterized conser 94.9 0.02 4.3E-07 62.6 3.3 50 674-726 55-106 (493)
72 PHA02825 LAP/PHD finger-like p 94.9 0.029 6.3E-07 55.7 4.1 47 677-727 5-58 (162)
73 PF10367 Vps39_2: Vacuolar sor 94.8 0.012 2.6E-07 52.8 1.3 33 678-711 76-108 (109)
74 PF04641 Rtf2: Rtf2 RING-finge 94.5 0.038 8.3E-07 58.5 4.3 51 677-728 110-161 (260)
75 KOG0826 Predicted E3 ubiquitin 94.4 0.035 7.6E-07 60.5 3.7 49 677-727 297-345 (357)
76 KOG2932 E3 ubiquitin ligase in 94.1 0.02 4.3E-07 61.9 1.1 44 681-728 91-134 (389)
77 PF14447 Prok-RING_4: Prokaryo 93.9 0.028 6.2E-07 46.7 1.4 46 679-729 6-51 (55)
78 PF12906 RINGv: RING-variant d 93.8 0.041 8.9E-07 44.0 2.1 40 683-723 1-47 (47)
79 KOG0827 Predicted E3 ubiquitin 93.5 0.0052 1.1E-07 67.9 -4.7 49 680-728 196-245 (465)
80 KOG1001 Helicase-like transcri 93.3 0.03 6.5E-07 66.7 0.9 43 681-727 455-499 (674)
81 KOG3268 Predicted E3 ubiquitin 93.3 0.052 1.1E-06 54.8 2.3 49 679-727 164-227 (234)
82 KOG1952 Transcription factor N 93.1 0.069 1.5E-06 64.0 3.3 47 679-725 190-244 (950)
83 PHA02862 5L protein; Provision 92.6 0.09 1.9E-06 51.6 2.9 47 681-727 3-52 (156)
84 COG5175 MOT2 Transcriptional r 91.6 0.11 2.4E-06 56.8 2.4 49 679-727 13-63 (480)
85 KOG0298 DEAD box-containing he 91.5 0.051 1.1E-06 67.6 -0.3 44 679-725 1152-1196(1394)
86 PF10272 Tmpp129: Putative tra 90.8 0.44 9.6E-06 53.1 6.2 27 701-727 311-350 (358)
87 KOG1940 Zn-finger protein [Gen 90.4 0.14 3.1E-06 55.0 1.8 44 682-725 160-204 (276)
88 PF08746 zf-RING-like: RING-li 89.9 0.16 3.5E-06 40.0 1.3 41 683-723 1-43 (43)
89 KOG3002 Zn finger protein [Gen 89.8 0.19 4.2E-06 54.6 2.3 45 677-728 45-91 (299)
90 PF05290 Baculo_IE-1: Baculovi 89.8 0.37 8.1E-06 46.8 3.9 48 679-729 79-133 (140)
91 PF03854 zf-P11: P-11 zinc fin 89.3 0.13 2.9E-06 41.7 0.5 31 698-728 15-46 (50)
92 KOG1829 Uncharacterized conser 88.8 0.47 1E-05 55.7 4.6 43 679-724 510-557 (580)
93 KOG1100 Predicted E3 ubiquitin 86.9 0.29 6.3E-06 50.6 1.3 39 683-728 161-200 (207)
94 COG5220 TFB3 Cdk activating ki 86.8 0.31 6.7E-06 51.4 1.4 47 679-725 9-61 (314)
95 KOG0825 PHD Zn-finger protein 86.7 0.36 7.9E-06 57.7 2.0 49 679-727 95-153 (1134)
96 KOG4362 Transcriptional regula 86.4 0.19 4E-06 59.8 -0.5 44 681-727 22-68 (684)
97 KOG1609 Protein involved in mR 85.9 0.46 9.9E-06 50.3 2.2 49 679-727 77-133 (323)
98 KOG1812 Predicted E3 ubiquitin 85.1 0.35 7.5E-06 54.3 0.9 39 679-717 145-184 (384)
99 KOG0309 Conserved WD40 repeat- 84.6 0.49 1.1E-05 56.5 1.8 27 696-722 1043-1069(1081)
100 COG5183 SSM4 Protein involved 84.3 0.74 1.6E-05 55.4 3.0 50 677-727 9-65 (1175)
101 KOG3053 Uncharacterized conser 82.8 0.54 1.2E-05 50.1 1.1 52 676-727 16-81 (293)
102 PF14446 Prok-RING_1: Prokaryo 82.4 1.5 3.2E-05 36.6 3.3 43 679-725 4-49 (54)
103 KOG2807 RNA polymerase II tran 78.1 1.7 3.6E-05 47.9 2.9 60 667-726 317-376 (378)
104 PF02891 zf-MIZ: MIZ/SP-RING z 76.4 2.9 6.4E-05 33.9 3.2 43 681-726 3-50 (50)
105 KOG3161 Predicted E3 ubiquitin 75.5 0.93 2E-05 53.5 0.1 40 680-721 11-51 (861)
106 KOG2817 Predicted E3 ubiquitin 75.1 2.4 5.2E-05 47.7 3.1 46 681-726 335-383 (394)
107 KOG3899 Uncharacterized conser 74.1 1.7 3.8E-05 47.1 1.7 27 701-727 325-364 (381)
108 KOG1812 Predicted E3 ubiquitin 73.7 5 0.00011 45.2 5.3 42 681-723 307-351 (384)
109 KOG1815 Predicted E3 ubiquitin 72.9 2.1 4.6E-05 48.8 2.1 37 678-716 68-104 (444)
110 KOG2066 Vacuolar assembly/sort 72.7 1.4 3E-05 53.2 0.6 44 679-723 783-830 (846)
111 KOG3579 Predicted E3 ubiquitin 72.6 1.6 3.5E-05 47.2 1.0 40 679-718 267-307 (352)
112 KOG3039 Uncharacterized conser 69.7 3 6.5E-05 44.5 2.2 34 679-715 42-75 (303)
113 KOG4718 Non-SMC (structural ma 69.7 2 4.4E-05 44.7 1.0 45 678-724 179-223 (235)
114 smart00249 PHD PHD zinc finger 66.9 3.1 6.6E-05 31.2 1.2 32 682-713 1-32 (47)
115 KOG0269 WD40 repeat-containing 66.6 4.2 9.1E-05 49.1 2.8 41 681-722 780-820 (839)
116 KOG2169 Zn-finger transcriptio 64.9 7.6 0.00016 46.6 4.6 43 681-727 307-355 (636)
117 KOG0824 Predicted E3 ubiquitin 63.5 2.4 5.1E-05 46.3 0.1 52 675-729 100-152 (324)
118 KOG3005 GIY-YIG type nuclease 60.4 4.4 9.6E-05 43.7 1.4 47 681-727 183-242 (276)
119 PF13901 DUF4206: Domain of un 59.7 6.7 0.00015 40.4 2.5 42 679-725 151-197 (202)
120 TIGR00622 ssl1 transcription f 57.2 12 0.00025 35.8 3.4 46 680-725 55-111 (112)
121 PF10235 Cript: Microtubule-as 54.3 7.3 0.00016 35.8 1.5 39 680-730 44-82 (90)
122 KOG2068 MOT2 transcription fac 54.1 8.9 0.00019 42.5 2.4 48 681-728 250-298 (327)
123 KOG0802 E3 ubiquitin ligase [P 51.6 5.9 0.00013 46.4 0.7 44 677-727 476-519 (543)
124 KOG3842 Adaptor protein Pellin 42.8 22 0.00047 39.5 3.2 51 677-727 338-413 (429)
125 smart00132 LIM Zinc-binding do 42.8 19 0.0004 26.0 1.9 38 682-728 1-38 (39)
126 COG5109 Uncharacterized conser 42.6 18 0.00039 40.0 2.6 44 681-724 337-383 (396)
127 PF06906 DUF1272: Protein of u 40.9 40 0.00086 28.6 3.7 45 682-729 7-53 (57)
128 PF04710 Pellino: Pellino; In 37.9 11 0.00023 42.8 0.0 28 696-726 304-337 (416)
129 KOG1814 Predicted E3 ubiquitin 37.8 15 0.00033 41.8 1.2 36 679-714 367-405 (445)
130 PF00628 PHD: PHD-finger; Int 37.8 15 0.00032 29.0 0.8 44 682-725 1-50 (51)
131 KOG4185 Predicted E3 ubiquitin 37.5 7.7 0.00017 41.4 -1.2 48 679-726 206-265 (296)
132 PF07975 C1_4: TFIIH C1-like d 37.3 20 0.00043 29.7 1.5 42 683-724 2-50 (51)
133 COG5151 SSL1 RNA polymerase II 36.5 32 0.00068 38.2 3.2 56 671-726 353-419 (421)
134 PLN02189 cellulose synthase 34.1 34 0.00074 43.3 3.4 49 679-727 33-86 (1040)
135 KOG2113 Predicted RNA binding 33.4 44 0.00096 37.1 3.7 46 677-727 340-386 (394)
136 PF13717 zinc_ribbon_4: zinc-r 33.2 21 0.00046 27.2 0.9 25 682-706 4-36 (36)
137 KOG3113 Uncharacterized conser 32.3 40 0.00086 36.5 3.1 46 681-728 112-158 (293)
138 KOG1245 Chromatin remodeling c 32.3 16 0.00035 47.6 0.3 46 681-726 1109-1158(1404)
139 KOG3726 Uncharacterized conser 32.0 21 0.00045 43.1 1.0 42 680-724 654-696 (717)
140 KOG2071 mRNA cleavage and poly 30.9 26 0.00056 41.6 1.6 36 678-713 511-556 (579)
141 PLN02436 cellulose synthase A 30.6 42 0.0009 42.7 3.3 49 679-727 35-88 (1094)
142 PF04710 Pellino: Pellino; In 29.2 18 0.00039 41.1 0.0 49 680-728 328-401 (416)
143 PF07191 zinc-ribbons_6: zinc- 29.0 5.9 0.00013 34.8 -3.0 39 681-727 2-40 (70)
144 KOG3799 Rab3 effector RIM1 and 28.4 9.7 0.00021 37.4 -2.0 21 677-704 62-83 (169)
145 PF04216 FdhE: Protein involve 27.0 15 0.00032 39.6 -1.1 48 679-726 171-220 (290)
146 COG5574 PEX10 RING-finger-cont 27.0 84 0.0018 34.2 4.4 39 677-715 92-132 (271)
147 PF05605 zf-Di19: Drought indu 26.5 31 0.00066 28.1 0.9 38 680-727 2-41 (54)
148 PF06844 DUF1244: Protein of u 25.9 39 0.00085 29.5 1.4 11 705-715 12-22 (68)
149 KOG2593 Transcription initiati 25.8 64 0.0014 37.2 3.5 51 567-619 9-60 (436)
150 KOG0955 PHD finger protein BR1 25.6 30 0.00065 43.9 1.0 36 676-711 215-252 (1051)
151 PF00412 LIM: LIM domain; Int 25.4 39 0.00085 26.9 1.3 12 682-693 28-39 (58)
152 COG3813 Uncharacterized protei 25.0 55 0.0012 29.2 2.2 43 683-728 8-52 (84)
153 PF02318 FYVE_2: FYVE-type zin 24.6 41 0.0009 31.7 1.5 46 679-725 53-102 (118)
154 KOG2979 Protein involved in DN 24.3 40 0.00086 36.4 1.4 42 680-723 176-219 (262)
155 PF14569 zf-UDP: Zinc-binding 24.2 65 0.0014 29.1 2.5 49 679-727 8-61 (80)
156 COG0068 HypF Hydrogenase matur 24.2 34 0.00074 41.6 1.0 47 679-725 100-181 (750)
157 PRK04023 DNA polymerase II lar 23.9 43 0.00093 42.3 1.8 48 677-729 623-675 (1121)
158 PF07649 C1_3: C1-like domain; 23.5 57 0.0012 23.5 1.7 29 682-710 2-30 (30)
159 PF07227 DUF1423: Protein of u 23.5 1.8E+02 0.0039 33.9 6.4 33 679-712 127-163 (446)
160 PLN02248 cellulose synthase-li 23.4 51 0.0011 42.1 2.3 48 680-727 124-176 (1135)
161 PF13719 zinc_ribbon_5: zinc-r 23.3 39 0.00084 25.8 0.8 25 682-706 4-36 (37)
162 smart00064 FYVE Protein presen 22.6 20 0.00043 30.0 -1.0 36 680-715 10-46 (68)
163 PLN02638 cellulose synthase A 22.1 79 0.0017 40.4 3.5 49 679-727 16-69 (1079)
164 KOG4443 Putative transcription 22.0 35 0.00075 41.1 0.5 45 681-725 19-70 (694)
165 PF10497 zf-4CXXC_R1: Zinc-fin 21.4 88 0.0019 29.3 3.0 24 702-725 37-69 (105)
166 PLN02915 cellulose synthase A 21.2 1E+02 0.0022 39.3 4.2 51 677-727 12-67 (1044)
167 KOG3842 Adaptor protein Pellin 20.9 49 0.0011 36.8 1.3 29 695-726 316-350 (429)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.8e-13 Score=147.41 Aligned_cols=49 Identities=49% Similarity=1.151 Sum_probs=45.2
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC-CCcCCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn-sCPICRkslLp 729 (730)
..|+||+|+|+.+|+++.|||+|.||..||++||.+.+ .||+||+.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 58999999999999999999999999999999999875 59999997754
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.35 E-value=3.2e-13 Score=104.62 Aligned_cols=44 Identities=50% Similarity=1.238 Sum_probs=40.5
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
+.|+||+++|..++.++.|+|+|.||.+||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.2e-11 Score=123.74 Aligned_cols=50 Identities=38% Similarity=1.018 Sum_probs=46.8
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHh-cCCCCcCCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 729 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-~knsCPICRkslLp 729 (730)
..+|+|||+.|...|++++|||.|.||..||++|+. .++.||+||..+.|
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 467999999999999999999999999999999999 78899999998865
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.04 E-value=1.7e-10 Score=119.54 Aligned_cols=51 Identities=35% Similarity=0.837 Sum_probs=42.2
Q ss_pred CCCCcccccccccCCCCc----e-EEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 678 SDEEPCCICQEEYTDGDN----L-GILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~----V-v~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..+.+|+||++.+.+++. + +.++|+|.||..||.+|+..+.+||+||+.+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 346789999999876531 2 34479999999999999999999999999764
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.03 E-value=2e-10 Score=98.94 Aligned_cols=46 Identities=43% Similarity=0.994 Sum_probs=37.2
Q ss_pred CCCcccccccccCCC----------CceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 679 DEEPCCICQEEYTDG----------DNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 679 ~~~~C~ICLEefe~g----------e~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
.++.|+||++.+.+. ..+...+|||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345699999999532 2355668999999999999999999999998
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.3e-10 Score=121.81 Aligned_cols=52 Identities=33% Similarity=0.811 Sum_probs=46.6
Q ss_pred CCCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 675 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 675 ~~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
........|.||+|...++ ..+||||+||+.||..|+..+..||+||..+.|
T Consensus 234 ~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred cCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 3445567899999999888 899999999999999999999999999998876
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.6e-10 Score=121.49 Aligned_cols=52 Identities=33% Similarity=0.902 Sum_probs=44.0
Q ss_pred CCCCCCcccccccc-cCCCC---------ceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 676 IPSDEEPCCICQEE-YTDGD---------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 676 ~~~~~~~C~ICLEe-fe~ge---------~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
...++..|.|||++ ++.++ .-..|||||+||.+|++.|++++.+||+||.++
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 35677899999999 44332 247899999999999999999999999999985
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=9.4e-10 Score=110.61 Aligned_cols=48 Identities=31% Similarity=0.721 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc----------------CCCCcCCCCCCC
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----------------KNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~----------------knsCPICRkslL 728 (730)
.++.+|+||++.+.++ ++++|||.||+.||.+|+.. +..||+||+.+.
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3457899999999887 77899999999999999852 246999999874
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.9e-10 Score=113.58 Aligned_cols=49 Identities=33% Similarity=0.639 Sum_probs=42.2
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc---CCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~---knsCPICRkslL 728 (730)
.....+|.||++.-+++ +++.|||.||+-||.+||.. ++.||+||..+.
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 44567899999998888 88899999999999999984 456999998764
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.8e-09 Score=106.77 Aligned_cols=56 Identities=27% Similarity=0.515 Sum_probs=45.8
Q ss_pred cccCCCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 672 LEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 672 ~e~~~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
+.....+....|+|||+.|.... .+.++|||+||+.||+.-++....||+|++++.
T Consensus 123 v~~~~~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 123 VDPLRKEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccccccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 33344556688999999987752 245799999999999999999999999998763
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=4.6e-09 Score=79.67 Aligned_cols=39 Identities=38% Similarity=1.022 Sum_probs=33.9
Q ss_pred ccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCC
Q 004800 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 723 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPIC 723 (730)
|+||++.+.++ ++.++|||.||+.||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998874 5678999999999999999998899998
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=4.7e-09 Score=83.58 Aligned_cols=46 Identities=39% Similarity=0.819 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
+..|.||++...+ +..+||||. ||..|+.+|+..+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999998655 588899999 999999999999999999999875
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.76 E-value=7.1e-09 Score=77.71 Aligned_cols=44 Identities=45% Similarity=1.077 Sum_probs=36.7
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCC
Q 004800 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 727 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRksl 727 (730)
+|.||++.+.. .+..++|+|.||..|++.|+.. ...||+||+.+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999833 3455569999999999999997 67799999864
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.66 E-value=2.5e-08 Score=81.81 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=41.3
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|+||++.+.++ +.++|||.|++.||.+|+..+..||+|++.+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999998 78899999999999999999889999998763
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.65 E-value=1.6e-08 Score=78.57 Aligned_cols=38 Identities=34% Similarity=0.857 Sum_probs=30.9
Q ss_pred ccccccccCCCCceEEccCCCcccHHHHHHHHhcC----CCCcCC
Q 004800 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPIC 723 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k----nsCPIC 723 (730)
|+||++.|.++ +.|+|||.||..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 999999999999999999854 359998
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-08 Score=117.28 Aligned_cols=52 Identities=38% Similarity=0.906 Sum_probs=45.2
Q ss_pred CCCCCcccccccccCCCCc--eEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~--Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...+..|+||+|++..++. ..+|+|+|+||..|++.|++++.+||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3446789999999998654 578999999999999999999999999998543
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.56 E-value=3.7e-08 Score=100.71 Aligned_cols=51 Identities=37% Similarity=0.796 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCCC-----CceEEc-cCCCcccHHHHHHHHhcC------CCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDG-----DNLGIL-DCGHDFHTNCIKQWLMQK------NLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~g-----e~Vv~L-PCGH~FH~~CI~qWL~~k------nsCPICRksl 727 (730)
...+.+|.||||..-.+ ...+.| +|+|.||..||++|...+ ..||+||..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 44567899999986432 123455 799999999999999853 4599999865
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.55 E-value=5.7e-08 Score=75.72 Aligned_cols=44 Identities=34% Similarity=0.835 Sum_probs=38.4
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCC
Q 004800 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRk 725 (730)
.|.||++.|...+....|+|||+||..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965556788899999999999999866778999986
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=6e-08 Score=73.69 Aligned_cols=39 Identities=41% Similarity=1.128 Sum_probs=34.2
Q ss_pred ccccccccCCCCceEEccCCCcccHHHHHHHHh--cCCCCcCC
Q 004800 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPIC 723 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~--~knsCPIC 723 (730)
|.||++.+.++ +..++|||.||.+||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998887 24789999999999999999 45669998
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=5e-08 Score=107.86 Aligned_cols=49 Identities=24% Similarity=0.665 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
......|.||++.|..+ +.++|||.||..||..||.....||+||..+.
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 34557899999999888 67899999999999999999889999998764
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.52 E-value=7.1e-08 Score=85.70 Aligned_cols=49 Identities=33% Similarity=0.852 Sum_probs=39.4
Q ss_pred CCCcccccccccCC----------CCceEEccCCCcccHHHHHHHHhc---CCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTD----------GDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~----------ge~Vv~LPCGH~FH~~CI~qWL~~---knsCPICRksl 727 (730)
.++.|.||...|+. ...++.-.|+|.||..||.+||.. +..||+||+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 46789999999882 113555589999999999999995 56799999864
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.47 E-value=1.4e-07 Score=68.31 Aligned_cols=38 Identities=50% Similarity=1.196 Sum_probs=32.7
Q ss_pred ccccccccCCCCceEEccCCCcccHHHHHHHHh-cCCCCcCC
Q 004800 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPIC 723 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-~knsCPIC 723 (730)
|.||++... .+..++|+|.||..||+.|+. .+..||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999843 348889999999999999999 56679998
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1e-07 Score=99.36 Aligned_cols=49 Identities=31% Similarity=0.721 Sum_probs=43.6
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHH-HHhcCCC-CcCCCCCCCC
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WLMQKNL-CPICKTTGLP 729 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~q-WL~~kns-CPICRkslLp 729 (730)
..+..|.||++....+ ..++|||+||..||.. |-.++.. ||+||+.+.+
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 5578899999998887 8999999999999999 8887766 9999998765
No 24
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.22 E-value=4e-07 Score=97.58 Aligned_cols=47 Identities=36% Similarity=0.655 Sum_probs=43.0
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
....|-||.|.|..+ .++||+|.||.-||+.+|..+..||.|+.++.
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 445799999999999 88899999999999999999999999998764
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.20 E-value=6.4e-07 Score=94.46 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=42.0
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
+....|.||.+.|..+ ..++|||.||.-||+..|..+..||+||..
T Consensus 23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCcccccc
Confidence 3446799999999999 888999999999999999999999999975
No 26
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.20 E-value=1.2e-06 Score=76.96 Aligned_cols=48 Identities=35% Similarity=0.800 Sum_probs=36.6
Q ss_pred CCcccccccccC-----------CCCc--eEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 680 EEPCCICQEEYT-----------DGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe-----------~ge~--Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
.+.|.||...|. .+++ ++--.|.|.||..||.+||..++.||+||++.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 355666666554 2332 34447999999999999999999999999874
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.9e-07 Score=99.79 Aligned_cols=47 Identities=34% Similarity=0.596 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcC-----CCCcCCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKTTGLP 729 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k-----nsCPICRkslLp 729 (730)
+..|+||++....+ ..+.|||+||..||.++|... ..||+||..+.+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 56799999998887 666799999999999998743 359999987654
No 28
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.7e-07 Score=94.07 Aligned_cols=51 Identities=31% Similarity=0.740 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCC-------ceEEccCCCcccHHHHHHHHh--cCCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGD-------NLGILDCGHDFHTNCIKQWLM--QKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge-------~Vv~LPCGH~FH~~CI~qWL~--~knsCPICRksl 727 (730)
..++..|.||-..+...+ .+.+|.|+|.||..||+-|.. +|.+||.||+++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 345678999988887655 578899999999999999976 788999999876
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.12 E-value=1.5e-06 Score=74.72 Aligned_cols=46 Identities=30% Similarity=0.436 Sum_probs=37.7
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
...|+||.+-+.++ +.++|||.|.+.||.+||.. ...||+|+..+.
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 45799999999999 89999999999999999998 889999998764
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.3e-06 Score=87.05 Aligned_cols=45 Identities=31% Similarity=0.775 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
..+...|.||++.|..+ ..++|+|.||..||..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 34567899999999999 8899999999999999998556799999
No 31
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2e-06 Score=95.93 Aligned_cols=53 Identities=28% Similarity=0.667 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCCCC-----c---------eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGD-----N---------LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge-----~---------Vv~LPCGH~FH~~CI~qWL~-~knsCPICRkslLp 729 (730)
......|+|||.++..-. - ...+||.|+||..|+.+|+. .|-.||+||..+-+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 344568999999887311 0 12459999999999999999 56689999998865
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.02 E-value=2.8e-06 Score=66.68 Aligned_cols=38 Identities=32% Similarity=0.833 Sum_probs=22.5
Q ss_pred ccccccccCCCC-ceEEccCCCcccHHHHHHHHhcC----CCCc
Q 004800 683 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQK----NLCP 721 (730)
Q Consensus 683 C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~~k----nsCP 721 (730)
|+||.| |.+++ .-+.|+|||.||++||.+|+... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86643 34778999999999999999853 2476
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.91 E-value=9.5e-06 Score=65.25 Aligned_cols=42 Identities=29% Similarity=0.795 Sum_probs=33.1
Q ss_pred cccccccccCCCCceEEccCC-----CcccHHHHHHHHhcC--CCCcCCC
Q 004800 682 PCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICK 724 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCG-----H~FH~~CI~qWL~~k--nsCPICR 724 (730)
.|.||++ ..+++....+||. |.||..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4999999 4444455578885 889999999999754 4799996
No 34
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.4e-06 Score=88.08 Aligned_cols=49 Identities=33% Similarity=0.638 Sum_probs=42.6
Q ss_pred CCCCcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslLp 729 (730)
+..++|.|||.+..+- .+|||-|. .|..|.+..--+.+.||+||+.+..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4467899999997665 99999999 8999999987789999999998754
No 35
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.9e-06 Score=72.06 Aligned_cols=51 Identities=37% Similarity=0.853 Sum_probs=38.3
Q ss_pred CCCCCcccccccccCC--------CC--ceEEccCCCcccHHHHHHHHhc---CCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTD--------GD--NLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~--------ge--~Vv~LPCGH~FH~~CI~qWL~~---knsCPICRksl 727 (730)
...+++|-||.-.|.. +| .++.-.|.|.||..||.+|+.. +..||+||++.
T Consensus 17 ~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 17 DAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred cCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 4455689999988873 22 2322269999999999999985 44599999864
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.73 E-value=9.9e-06 Score=95.57 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=40.2
Q ss_pred CCCCCCcccccccccCCCC----ceEEccCCCcccHHHHHHHHhc--CCCCcCCCCCCC
Q 004800 676 IPSDEEPCCICQEEYTDGD----NLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge----~Vv~LPCGH~FH~~CI~qWL~~--knsCPICRkslL 728 (730)
...+.++|+||+..+..-| .-++-.|.|+||..|+.+|++. ..+||+||..+.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456789999998776211 1144569999999999999995 567999998763
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.68 E-value=8.7e-06 Score=69.91 Aligned_cols=49 Identities=29% Similarity=0.734 Sum_probs=23.5
Q ss_pred CCcccccccccCCCCc---eEEc--cCCCcccHHHHHHHHhc----C-------CCCcCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDN---LGIL--DCGHDFHTNCIKQWLMQ----K-------NLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~---Vv~L--PCGH~FH~~CI~qWL~~----k-------nsCPICRkslL 728 (730)
+..|.||++.+.+.+. ++.- .|++.||..||.+||.. + ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3579999998763332 2222 59999999999999982 1 13999998763
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3e-05 Score=71.17 Aligned_cols=51 Identities=29% Similarity=0.740 Sum_probs=37.9
Q ss_pred CCCCCCcccccccccCC-------------CC-ceEEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 676 IPSDEEPCCICQEEYTD-------------GD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~-------------ge-~Vv~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
.+...+.|+||...+.+ .| .|.--.|.|.||..||.+||+.++.||+|.+.
T Consensus 42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 34556778888665541 11 23333799999999999999999999999875
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=8.9e-06 Score=88.07 Aligned_cols=48 Identities=27% Similarity=0.537 Sum_probs=38.8
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc-CCCCcCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~-knsCPICRkslL 728 (730)
.+..|.|||+-+... +....|.|.||.+||..-|+. .+.||.||+.+.
T Consensus 42 ~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 456799999998765 223359999999999988885 578999999875
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.52 E-value=1.7e-05 Score=92.34 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=44.9
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
....|+||+..+.+.......+|+|+||..||..|-+.-.+||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 456799999999988766777899999999999999999999999987653
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=2.6e-05 Score=64.24 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=37.9
Q ss_pred CCcccccccccCCCCceEEccCCCc-ccHHHHHHHHh-cCCCCcCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLM-QKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~-~knsCPICRkslL 728 (730)
..+|.||+|...+. +...|||. .|++|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 36799999997776 56689998 89999777666 7889999998764
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.4e-05 Score=82.85 Aligned_cols=50 Identities=40% Similarity=0.988 Sum_probs=38.4
Q ss_pred CCCCcccccccccCCCC----ceEEc-cCCCcccHHHHHHHHh--c-----CCCCcCCCCCC
Q 004800 678 SDEEPCCICQEEYTDGD----NLGIL-DCGHDFHTNCIKQWLM--Q-----KNLCPICKTTG 727 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge----~Vv~L-PCGH~FH~~CI~qWL~--~-----knsCPICRksl 727 (730)
..+++|.|||+...+.- ..++| +|.|.||..||++|-. + .+.||+||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45678999999987652 12344 4999999999999984 3 36799999753
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.40 E-value=6.3e-05 Score=80.12 Aligned_cols=53 Identities=21% Similarity=0.621 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh-----------------------cCCCCcCCCCCCC
Q 004800 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------------------QKNLCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-----------------------~knsCPICRkslL 728 (730)
.....-.|.|||--|.+++.+.+++|-|.||..|+.++|. .+..||+||..+.
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3445567999999999999999999999999999988763 1234999998764
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00014 Score=85.37 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=38.8
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHh-cCCCCcCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-~knsCPICRkslL 728 (730)
...|++|-..+.+. +++.|+|.||..||..-+. +...||.|.+.+-
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 46799999777665 7778999999999999998 5678999998764
No 45
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00028 Score=75.15 Aligned_cols=90 Identities=24% Similarity=0.366 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCCCCH--HHHHHHhhhccCCCcccC---CCCCCCcccccccccCCCCceEEccCCCc-
Q 004800 631 LDVDNMSYEELLALEERIGDVSTGLNE--ETIMKIMKQKRYPSLEIE---IPSDEEPCCICQEEYTDGDNLGILDCGHD- 704 (730)
Q Consensus 631 lDvDnmsyEeLlaLeErigsvs~GlSe--E~I~kll~q~ky~~~e~~---~~~~~~~C~ICLEefe~ge~Vv~LPCGH~- 704 (730)
+|.++++-.+|+++..+-...-+|..+ +.+.+.....+- ..... .......|.|||+...+. +.|+|||.
T Consensus 247 ~d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~-~~g~~~~~s~~~~~LC~ICmDaP~DC---vfLeCGHmV 322 (350)
T KOG4275|consen 247 LDEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKG-NDGEQHSRSLATRRLCAICMDAPRDC---VFLECGHMV 322 (350)
T ss_pred cccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhc-ccccccccchhHHHHHHHHhcCCcce---EEeecCcEE
Confidence 455666666776665544433344442 222222222111 11111 112256799999998777 99999997
Q ss_pred ccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 705 FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 705 FH~~CI~qWL~~knsCPICRkslL 728 (730)
-|.+|-+. -+.|||||+.+.
T Consensus 323 tCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 323 TCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred eehhhccc----cccCchHHHHHH
Confidence 78888654 348999998653
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.23 E-value=5.8e-05 Score=64.11 Aligned_cols=43 Identities=30% Similarity=0.736 Sum_probs=23.3
Q ss_pred CcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|.+|.+.+..+ +.| .|.|.||..||..-+. ..||+|+.++.
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 4699999999888 554 7999999999988555 34999998763
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00024 Score=79.29 Aligned_cols=48 Identities=29% Similarity=0.765 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..+..|+||+..+..+ +.+||||.||..||.+-+.+...||+||..+.
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 4567899999999988 88899999999999998888888999998764
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.16 E-value=0.00017 Score=80.31 Aligned_cols=49 Identities=27% Similarity=0.817 Sum_probs=38.3
Q ss_pred CCCcccccccccCCCC-ceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
+.-+|+||+|.+.... -+..+.|.|.||-.|+.+|. ..+||+||....|
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~p 223 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQSP 223 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcCc
Confidence 4457999999987543 24555799999999999994 5679999986553
No 49
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00036 Score=75.85 Aligned_cols=49 Identities=33% Similarity=0.571 Sum_probs=42.7
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..++..|+||+..-... +..||+|.-|+.||.+.|...+.|=.||+++.
T Consensus 419 ~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 35677899998876555 77899999999999999999999999999875
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00072 Score=71.61 Aligned_cols=51 Identities=25% Similarity=0.450 Sum_probs=41.0
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc--CCCCcCCCCCCC
Q 004800 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGL 728 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--knsCPICRkslL 728 (730)
....+.+|++|.+....+ ....+|+|+||+.||..-+.- ..+||.|-..+.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345667899999998888 244579999999999987664 467999988775
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.96 E-value=0.00027 Score=77.67 Aligned_cols=46 Identities=33% Similarity=0.763 Sum_probs=37.5
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhc--CCCCcCCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--knsCPICRkslLp 729 (730)
+.|.||-|. +++|.+-||||..|..|+..|-.. ...||.||.++.-
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 459999886 344567799999999999999863 5789999998754
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.79 E-value=0.00072 Score=56.21 Aligned_cols=42 Identities=26% Similarity=0.602 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc--CCCCcC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPI 722 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--knsCPI 722 (730)
....|+|.+..|+++ |+...|+|.|-++.|.+||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346799999999887 555689999999999999954 345999
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.77 E-value=0.00061 Score=75.94 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCceEE-ccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~-LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.+.+..|.||+..+.++ .. +.|||.||..||..|+..+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45567899999999998 44 589999999999999999999999988764
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.61 E-value=0.00068 Score=73.35 Aligned_cols=50 Identities=26% Similarity=0.607 Sum_probs=41.6
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.....+|.+|-..|.+.. .+..|-|.||+.||.+.|...+.||.|...+-
T Consensus 12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 345678999999998872 33469999999999999999999999987553
No 55
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.59 E-value=0.0013 Score=80.71 Aligned_cols=52 Identities=33% Similarity=0.625 Sum_probs=40.9
Q ss_pred CCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----------CCcCCCCCC
Q 004800 676 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----------LCPICKTTG 727 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----------sCPICRksl 727 (730)
..+.++.|.||..+--..-....|.|+|+||..|.+.-|+++- .||+|+.++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3455678999988766555678899999999999988776432 399999876
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.52 E-value=0.0012 Score=67.10 Aligned_cols=43 Identities=26% Similarity=0.700 Sum_probs=39.2
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
..|.||.++|+.+ +++.|||.||..|.-.-++....|-+|-+.
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 4799999999999 888999999999998888888899999764
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.33 E-value=0.0012 Score=72.65 Aligned_cols=46 Identities=33% Similarity=0.736 Sum_probs=38.6
Q ss_pred CCcccccccccCC-CCceEEccCCCcccHHHHHHHHhcC--CCCcCCCC
Q 004800 680 EEPCCICQEEYTD-GDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKT 725 (730)
Q Consensus 680 ~~~C~ICLEefe~-ge~Vv~LPCGH~FH~~CI~qWL~~k--nsCPICRk 725 (730)
+..|..|-+.+.. ++.+-.|||.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3569999998875 4567889999999999999999865 46999994
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.25 E-value=0.0018 Score=73.49 Aligned_cols=48 Identities=27% Similarity=0.604 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh-----cCCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~-----~knsCPICRksl 727 (730)
......|.+|.+.-++. ....|.|+||+-||+.++. ..-+||+|-..+
T Consensus 533 nk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34556899999987666 7788999999999999886 235699997654
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0029 Score=70.26 Aligned_cols=46 Identities=33% Similarity=0.631 Sum_probs=38.1
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhc--------CCCCcCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKT 725 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--------knsCPICRk 725 (730)
...|+||+++..-.+-+..|||+|+||+.|++.++.. .-.||-|+-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3579999999888788999999999999999999873 223887654
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0026 Score=68.04 Aligned_cols=44 Identities=23% Similarity=0.546 Sum_probs=39.9
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
..|-||...|..+ +++.|+|.||..|...-++....|.+|-+..
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 4599999999999 8999999999999998888888999998754
No 61
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.97 E-value=0.0037 Score=66.95 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=35.6
Q ss_pred CCcccccccccCCCCceEEcc-CCCcccHHHHHHHHh-cCCCCcCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLM-QKNLCPICKT 725 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~-~knsCPICRk 725 (730)
...|+.|..-+..+ ..++ |+|.||.+||..-|. ....||.|.+
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 37899999988887 5565 999999999998877 4677999954
No 62
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.0064 Score=72.46 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=35.7
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
...+|.+|--.++.+ ++...|||.||.+|+. .....||.|+..
T Consensus 839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 446899999998887 6777899999999998 455679999874
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.0097 Score=62.49 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..+.|+||.+.+........| +|||+|+++|+.+.+.....||+|-+++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 446799999999988777777 89999999999999999999999988764
No 64
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0036 Score=62.03 Aligned_cols=35 Identities=29% Similarity=0.618 Sum_probs=30.0
Q ss_pred ccCCCCCCCcccccccccCCCCceEEccCCCcccH
Q 004800 673 EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHT 707 (730)
Q Consensus 673 e~~~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~ 707 (730)
+....++.-+|.||+|+++.++.+..|||-.+||+
T Consensus 170 dDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 170 DDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 33445566789999999999999999999999996
No 65
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.009 Score=61.96 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=39.2
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhc--------CCCCcCCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKTTGLP 729 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~--------knsCPICRkslLp 729 (730)
-.|.+|-..+..+|- +.|.|-|.||++|+..|-.. ...||.|..++.|
T Consensus 51 pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 359999888888754 56889999999999999763 2249999998876
No 66
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.0062 Score=72.96 Aligned_cols=38 Identities=21% Similarity=0.590 Sum_probs=29.9
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHh
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 715 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~ 715 (730)
.+..+.|.+|...+-.. ...+-+|||.||++||.+-..
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 44567899998887664 456679999999999987653
No 67
>PHA03096 p28-like protein; Provisional
Probab=95.14 E-value=0.0098 Score=64.02 Aligned_cols=45 Identities=33% Similarity=0.667 Sum_probs=33.2
Q ss_pred CcccccccccCCC----CceEEcc-CCCcccHHHHHHHHhc---CCCCcCCCC
Q 004800 681 EPCCICQEEYTDG----DNLGILD-CGHDFHTNCIKQWLMQ---KNLCPICKT 725 (730)
Q Consensus 681 ~~C~ICLEefe~g----e~Vv~LP-CGH~FH~~CI~qWL~~---knsCPICRk 725 (730)
..|.||++..... ..-..|+ |.|.||..||+.|-.. +.+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999987753 2345664 9999999999999874 334555553
No 68
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.13 E-value=0.0088 Score=57.80 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=30.0
Q ss_pred CCcccccccccCCCCceEEccCC------CcccHHHHHHHHh
Q 004800 680 EEPCCICQEEYTDGDNLGILDCG------HDFHTNCIKQWLM 715 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCG------H~FH~~CI~qWL~ 715 (730)
..+|.||++.+...+-|+.++|+ |.||.+|+++|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 45799999999984457777887 8999999999943
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.011 Score=65.05 Aligned_cols=43 Identities=23% Similarity=0.601 Sum_probs=31.8
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
....|.||+++...- +.+||||.-| |+.-- +.-..||+||+.+
T Consensus 304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHH
Confidence 345699999997664 8899999977 65443 2334499999865
No 70
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.99 E-value=0.02 Score=46.34 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=23.2
Q ss_pred ccccccccCCCC-ceEEccCCCcccHHHHHHHHh-cCCCCcCCCCC
Q 004800 683 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLM-QKNLCPICKTT 726 (730)
Q Consensus 683 C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~-~knsCPICRks 726 (730)
|++|.+++...+ .+.--+|++.+|..|...-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999994332 333346999999999988886 47789999986
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.91 E-value=0.02 Score=62.64 Aligned_cols=50 Identities=26% Similarity=0.607 Sum_probs=39.5
Q ss_pred cCCCCCCCcccccccccCCCCceEEccCCCcccHHHHHHH--HhcCCCCcCCCCC
Q 004800 674 IEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW--LMQKNLCPICKTT 726 (730)
Q Consensus 674 ~~~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qW--L~~knsCPICRks 726 (730)
++.+++...|.||.+.+.-- ..+||+|..|--|..+. |-.++.||+||+.
T Consensus 55 ddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 34556667899999986543 78899999999998654 4478899999985
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.87 E-value=0.029 Score=55.68 Aligned_cols=47 Identities=26% Similarity=0.661 Sum_probs=34.4
Q ss_pred CCCCCcccccccccCCCCceEEccCCC-----cccHHHHHHHHhcC--CCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGH-----DFHTNCIKQWLMQK--NLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH-----~FH~~CI~qWL~~k--nsCPICRksl 727 (730)
...+..|-||.++..+ . .-||.. .-|.+|+.+|+..+ ..|++|+++.
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 4456789999988532 1 346654 45999999999854 4599998753
No 73
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.84 E-value=0.012 Score=52.77 Aligned_cols=33 Identities=27% Similarity=0.779 Sum_probs=27.5
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHH
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIK 711 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~ 711 (730)
.....|.||-..+.. ..+...||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 456679999999877 456777999999999985
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.52 E-value=0.038 Score=58.47 Aligned_cols=51 Identities=20% Similarity=0.462 Sum_probs=39.6
Q ss_pred CCCCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
......|+|+..+|......+.| +|||+|...||++. .....||+|-+++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence 34557899999999655555555 89999999999997 23557999988754
No 75
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.035 Score=60.47 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=39.4
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
..+...|+||+.....+ .++..-|-+||+.||...+...+.||+--.++
T Consensus 297 ~~~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 33456799999998887 23335799999999999999999999976544
No 76
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.02 Score=61.89 Aligned_cols=44 Identities=20% Similarity=0.488 Sum_probs=31.0
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
-.|.-|--.+.+= -+.+||+|+||++|... ...+.||.|-.+++
T Consensus 91 HfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 3566675544431 25669999999999754 45778999987664
No 77
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.90 E-value=0.028 Score=46.68 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=35.5
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
....|..|...-..+ .+++|||+.|..|..- ++-+-||+|-+++..
T Consensus 6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 345688887775555 7889999999999654 366779999987753
No 78
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.78 E-value=0.041 Score=44.01 Aligned_cols=40 Identities=30% Similarity=0.810 Sum_probs=27.4
Q ss_pred ccccccccCCCCceEEccCC--C---cccHHHHHHHHhc--CCCCcCC
Q 004800 683 CCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPIC 723 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCG--H---~FH~~CI~qWL~~--knsCPIC 723 (730)
|-||++...+.+. .+.||. = ..|..|+.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7899999777652 345655 3 6799999999984 4569998
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.0052 Score=67.88 Aligned_cols=49 Identities=27% Similarity=0.584 Sum_probs=42.8
Q ss_pred CCcccccccccCCC-CceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 680 EEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe~g-e~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
...|.||.+.|... +.+..+-|||.+|.+||.+||..+..||.|++++.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 45799999999876 56677889999999999999999999999998763
No 80
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.32 E-value=0.03 Score=66.73 Aligned_cols=43 Identities=37% Similarity=0.864 Sum_probs=35.0
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcC--CCCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k--nsCPICRksl 727 (730)
..|.||++ . +....+.|+|.||..|+..-+... ..||+||..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 3 345788999999999999988753 3499999754
No 81
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.052 Score=54.80 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=35.2
Q ss_pred CCCcccccccccCCCCc---e-EEccCCCcccHHHHHHHHhcC-----------CCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDN---L-GILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~---V-v~LPCGH~FH~~CI~qWL~~k-----------nsCPICRksl 727 (730)
....|.||+..--++.. + --..||.-||.-|+..||+.- ..||.|.+++
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 34568999876655432 1 223799999999999999821 1399999876
No 82
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.07 E-value=0.069 Score=64.05 Aligned_cols=47 Identities=34% Similarity=0.771 Sum_probs=35.5
Q ss_pred CCCcccccccccCCCCceE-EccCCCcccHHHHHHHHhcC--C-----CCcCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWLMQK--N-----LCPICKT 725 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv-~LPCGH~FH~~CI~qWL~~k--n-----sCPICRk 725 (730)
..++|.||++.+.....+- ...|-|+||..||+.|-... . .||.|..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3457999999988765442 22588999999999998741 1 2999984
No 83
>PHA02862 5L protein; Provisional
Probab=92.65 E-value=0.09 Score=51.60 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=30.6
Q ss_pred CcccccccccCCCCc-eEEccCCCcccHHHHHHHHhc--CCCCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~-Vv~LPCGH~FH~~CI~qWL~~--knsCPICRksl 727 (730)
..|-||.++-++... -.+.----.-|.+|+.+|+.. +..|++|+.+.
T Consensus 3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 579999998543300 000000146899999999984 56799999864
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.56 E-value=0.11 Score=56.83 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=34.9
Q ss_pred CCCcccccccccCCCCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRksl 727 (730)
+++.|++|+|++.+.|+ ..-.+||-..|.-|...--+ -...||.||+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 44459999999988764 33448998888888655433 245699999853
No 85
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.49 E-value=0.051 Score=67.58 Aligned_cols=44 Identities=39% Similarity=0.899 Sum_probs=38.7
Q ss_pred CCCcccccccccC-CCCceEEccCCCcccHHHHHHHHhcCCCCcCCCC
Q 004800 679 DEEPCCICQEEYT-DGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725 (730)
Q Consensus 679 ~~~~C~ICLEefe-~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRk 725 (730)
....|.||++.+. .+ .+..|||.||..|+..|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 3457999999998 55 66789999999999999999999999984
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.85 E-value=0.44 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.811 Sum_probs=20.6
Q ss_pred CCCcccHHHHHHHHhc-------------CCCCcCCCCCC
Q 004800 701 CGHDFHTNCIKQWLMQ-------------KNLCPICKTTG 727 (730)
Q Consensus 701 CGH~FH~~CI~qWL~~-------------knsCPICRksl 727 (730)
|--.+|.+|+-+|+.. +-.||+||++.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4466899999999863 33599999863
No 87
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.37 E-value=0.14 Score=55.04 Aligned_cols=44 Identities=34% Similarity=0.833 Sum_probs=37.9
Q ss_pred cccccccccCCCC-ceEEccCCCcccHHHHHHHHhcCCCCcCCCC
Q 004800 682 PCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725 (730)
Q Consensus 682 ~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~~knsCPICRk 725 (730)
.|+||.+.+.... .+..++|||.-|..|........-.||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3999999888755 4567899999999999998887788999988
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.86 E-value=0.16 Score=40.04 Aligned_cols=41 Identities=32% Similarity=0.831 Sum_probs=23.7
Q ss_pred ccccccccCCCCceEEccCCCcccHHHHHHHHhcCC--CCcCC
Q 004800 683 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPIC 723 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn--sCPIC 723 (730)
|.+|.+....+..-....|+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888888872111114999999999999999765 69998
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.82 E-value=0.19 Score=54.64 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=36.0
Q ss_pred CCCCCcccccccccCCCCceEEccC--CCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDC--GHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPC--GH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..+..+|+||.+.+..+ +..| ||+-|..|-. +..+.||.||..+-
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34556899999999988 6677 6999999965 35778999998763
No 90
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.79 E-value=0.37 Score=46.80 Aligned_cols=48 Identities=27% Similarity=0.580 Sum_probs=38.6
Q ss_pred CCCcccccccccCCCCceEEc-c---CCCcccHHHHHHHHhc---CCCCcCCCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGIL-D---CGHDFHTNCIKQWLMQ---KNLCPICKTTGLP 729 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L-P---CGH~FH~~CI~qWL~~---knsCPICRkslLp 729 (730)
...+|.||.|.-.+. +.| | ||-..|..|....|+. ...||+||+....
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 567899999998776 555 2 9999999999888774 5679999997653
No 91
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.35 E-value=0.13 Score=41.68 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=23.7
Q ss_pred EccCC-CcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 698 ILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 698 ~LPCG-H~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.+.|. |..|..|+...|.....||+|++++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 45687 99999999999999999999998763
No 92
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=88.84 E-value=0.47 Score=55.75 Aligned_cols=43 Identities=23% Similarity=0.657 Sum_probs=28.4
Q ss_pred CCCcccccccc-----cCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 679 DEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 679 ~~~~C~ICLEe-----fe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
....|.||... |++....++..|+++||++|++. .+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34568888432 22222345668999999999654 445599993
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.90 E-value=0.29 Score=50.61 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=29.4
Q ss_pred ccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 683 CCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRkslL 728 (730)
|.+|-+. +-.|..+||-|. +|..|=.. ...||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888776 344778899987 89999543 456999997653
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.77 E-value=0.31 Score=51.40 Aligned_cols=47 Identities=21% Similarity=0.630 Sum_probs=34.4
Q ss_pred CCCcccccccccCCCCceEEc--c-CCCcccHHHHHHHHhcC-CCCc--CCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGIL--D-CGHDFHTNCIKQWLMQK-NLCP--ICKT 725 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L--P-CGH~FH~~CI~qWL~~k-nsCP--ICRk 725 (730)
.+..|+||..+.-..-.+..| | |-|..|..|+++-+... ..|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 345799998765543334444 5 99999999999999865 5699 6644
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.69 E-value=0.36 Score=57.74 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=34.4
Q ss_pred CCCcccccccccCCCC-ceEEcc---CCCcccHHHHHHHHhc------CCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTDGD-NLGILD---CGHDFHTNCIKQWLMQ------KNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge-~Vv~LP---CGH~FH~~CI~qWL~~------knsCPICRksl 727 (730)
+...|.||.-++..++ ....+| |+|.||..||..|+.+ +-.|++|...+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3455777766666533 233444 9999999999999863 34599998765
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=86.39 E-value=0.19 Score=59.77 Aligned_cols=44 Identities=30% Similarity=0.693 Sum_probs=37.2
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC---CCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn---sCPICRksl 727 (730)
.+|.||...|..+ ..+.|-|.||..|+..-|..++ .||+|+..+
T Consensus 22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 5699999999998 7889999999999987777544 599999643
No 97
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.86 E-value=0.46 Score=50.34 Aligned_cols=49 Identities=31% Similarity=0.673 Sum_probs=35.5
Q ss_pred CCCcccccccccCCCCc-eEEccCC-----CcccHHHHHHHHhc--CCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTDGDN-LGILDCG-----HDFHTNCIKQWLMQ--KNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~-Vv~LPCG-----H~FH~~CI~qWL~~--knsCPICRksl 727 (730)
....|.||+++...... ....||. +..|..|+..|+.. +..|-+|....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 35679999998765421 2345655 56899999999994 55699998754
No 98
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.15 E-value=0.35 Score=54.30 Aligned_cols=39 Identities=38% Similarity=0.809 Sum_probs=29.3
Q ss_pred CCCcccccccccCCC-CceEEccCCCcccHHHHHHHHhcC
Q 004800 679 DEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQK 717 (730)
Q Consensus 679 ~~~~C~ICLEefe~g-e~Vv~LPCGH~FH~~CI~qWL~~k 717 (730)
...+|.||+.++... +....+.|+|.||.+|+++.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 457899999555444 333456799999999999998844
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.63 E-value=0.49 Score=56.52 Aligned_cols=27 Identities=33% Similarity=0.749 Sum_probs=24.3
Q ss_pred eEEccCCCcccHHHHHHHHhcCCCCcC
Q 004800 696 LGILDCGHDFHTNCIKQWLMQKNLCPI 722 (730)
Q Consensus 696 Vv~LPCGH~FH~~CI~qWL~~knsCPI 722 (730)
..+..|+|..|..|.+.|++....||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 456789999999999999999999985
No 100
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.25 E-value=0.74 Score=55.41 Aligned_cols=50 Identities=28% Similarity=0.662 Sum_probs=36.3
Q ss_pred CCCCCcccccccccCCCCceEEccCCC-----cccHHHHHHHHhc--CCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGH-----DFHTNCIKQWLMQ--KNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH-----~FH~~CI~qWL~~--knsCPICRksl 727 (730)
.+++..|.||..+=..++.+ .-||+. ..|.+|+.+|+.. +..|-+|+.+.
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 44557899998875554332 336764 4899999999995 45599998764
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.78 E-value=0.54 Score=50.08 Aligned_cols=52 Identities=27% Similarity=0.555 Sum_probs=36.2
Q ss_pred CCCCCCcccccccccCCCCce-EEccCC-----CcccHHHHHHHHhcCC--------CCcCCCCCC
Q 004800 676 IPSDEEPCCICQEEYTDGDNL-GILDCG-----HDFHTNCIKQWLMQKN--------LCPICKTTG 727 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~ge~V-v~LPCG-----H~FH~~CI~qWL~~kn--------sCPICRksl 727 (730)
..+.+..|-||+..-++.-.. -+-||- |..|..|+..|+..|. .||.|+++-
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 345667799999875554211 112664 7899999999997544 399999864
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.44 E-value=1.5 Score=36.62 Aligned_cols=43 Identities=28% Similarity=0.826 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcC--CCC
Q 004800 679 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPI--CKT 725 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPI--CRk 725 (730)
....|.+|-+.|.+++++++- .||=.||++|... ...|-+ |.+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~ 49 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGT 49 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCC
Confidence 345799999999876666655 5999999999643 445655 544
No 103
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=78.07 E-value=1.7 Score=47.89 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=42.0
Q ss_pred ccCCCcccCCCCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 667 KRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 667 ~ky~~~e~~~~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
+.+..+..........|-.|.++.......++-.|+|.||.+|=.---+.-..||-|...
T Consensus 317 ~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 317 KPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred cchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 333333333444556699998888887777778899999999954433455679999753
No 104
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=76.41 E-value=2.9 Score=33.93 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=21.1
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHh---cCC--CCcCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKN--LCPICKTT 726 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~---~kn--sCPICRks 726 (730)
..|+|....+..+ ++-..|.|.-|.+ ++.||. ++. .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4699999888887 5555799985532 345554 222 49999874
No 105
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.46 E-value=0.93 Score=53.47 Aligned_cols=40 Identities=25% Similarity=0.558 Sum_probs=29.6
Q ss_pred CCcccccccccCCCC-ceEEccCCCcccHHHHHHHHhcCCCCc
Q 004800 680 EEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCP 721 (730)
Q Consensus 680 ~~~C~ICLEefe~ge-~Vv~LPCGH~FH~~CI~qWL~~knsCP 721 (730)
...|.||+..|.... .-+.|.|||..|..|+.... +.+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 356999988887643 23667899999999998754 44566
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.06 E-value=2.4 Score=47.72 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=37.5
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcC---CCCcCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK---NLCPICKTT 726 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~k---nsCPICRks 726 (730)
..|+|=.+.-.+.+.-..|.|||+.+++-|.+.-+.. ..||.|=..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 5699988887777777899999999999999977643 359999554
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.11 E-value=1.7 Score=47.11 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCcCCCCCC
Q 004800 701 CGHDFHTNCIKQWLM-------------QKNLCPICKTTG 727 (730)
Q Consensus 701 CGH~FH~~CI~qWL~-------------~knsCPICRksl 727 (730)
|...+|.+|+-+|+. .+..||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667899999999875 345699999864
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.71 E-value=5 Score=45.22 Aligned_cols=42 Identities=24% Similarity=0.581 Sum_probs=30.3
Q ss_pred CcccccccccCCCC---ceEEccCCCcccHHHHHHHHhcCCCCcCC
Q 004800 681 EPCCICQEEYTDGD---NLGILDCGHDFHTNCIKQWLMQKNLCPIC 723 (730)
Q Consensus 681 ~~C~ICLEefe~ge---~Vv~LPCGH~FH~~CI~qWL~~knsCPIC 723 (730)
..|++|.-.++..+ .+.+. |||.||+.|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 45777766655432 34444 99999999999998888777555
No 109
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=2.1 Score=48.78 Aligned_cols=37 Identities=32% Similarity=0.689 Sum_probs=31.2
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhc
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 716 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~ 716 (730)
.....|-||.+.+.. .+..+.|+|.||..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 345679999999876 5677899999999999998874
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.69 E-value=1.4 Score=53.22 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=33.0
Q ss_pred CCCcccccccccCCC----CceEEccCCCcccHHHHHHHHhcCCCCcCC
Q 004800 679 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPIC 723 (730)
Q Consensus 679 ~~~~C~ICLEefe~g----e~Vv~LPCGH~FH~~CI~qWL~~knsCPIC 723 (730)
-+..|+-|.+..... +.++.+.|+|.||+.|+.--..+.+ |-+|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 345799999887632 4578899999999999977666554 6555
No 111
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=1.6 Score=47.22 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=30.5
Q ss_pred CCCcccccccccCCCCceEEcc-CCCcccHHHHHHHHhcCC
Q 004800 679 DEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKN 718 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LP-CGH~FH~~CI~qWL~~kn 718 (730)
....|.+|.|.+++.+.|.+-. =.|+||.-|-++-++++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 3467999999999985443332 469999999999998644
No 112
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.75 E-value=3 Score=44.50 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=30.1
Q ss_pred CCCcccccccccCCCCceEEccCCCcccHHHHHHHHh
Q 004800 679 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 715 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~ 715 (730)
.-..|++|+..+.++ ++.+=||+||.+||.+++.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 335699999999999 8999999999999999875
No 113
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=69.69 E-value=2 Score=44.75 Aligned_cols=45 Identities=24% Similarity=0.775 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 678 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 678 ~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
+..+.|.+|.+-...+ +++-.|+-.||..|+...+.....||-|.
T Consensus 179 dnlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 3457899999987776 45567999999999999999999999994
No 114
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.56 E-value=4.2 Score=49.11 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=30.4
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPI 722 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPI 722 (730)
..|++|-..+ .+..+-+-.|+|.-|..|+++|+....-||.
T Consensus 780 ~~CtVC~~vi-~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVI-RGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeeccee-eeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 3688886553 3333444469999999999999998877776
No 116
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=64.91 E-value=7.6 Score=46.58 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=25.6
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHh----cCC--CCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM----QKN--LCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~----~kn--sCPICRksl 727 (730)
..|+||.-....+ .+...|+|+=|.+-. |+. ++. .||+|.+.+
T Consensus 307 L~CPl~~~Rm~~P--~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 307 LNCPLSKMRMSLP--ARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred ecCCcccceeecC--Ccccccccceecchh--hhHHhccCCCeeeCccCCccc
Confidence 5688887775554 244557765554443 333 222 299998865
No 117
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.51 E-value=2.4 Score=46.33 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=41.9
Q ss_pred CCCCCCCcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 675 EIPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 675 ~~~~~~~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
....+...|-||...+..++ .. -|.|.||..|...|....+.||.||..+.+
T Consensus 100 ~~~~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 100 GFQQDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cccCCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 34455678999999988772 33 399999999999999999999999976543
No 118
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=60.37 E-value=4.4 Score=43.66 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=34.2
Q ss_pred CcccccccccCCCCceEEc----cCCCcccHHHHHHHHh---------cCCCCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLM---------QKNLCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~L----PCGH~FH~~CI~qWL~---------~knsCPICRksl 727 (730)
..|-||.+++...+..+.+ .|.-++|..|+..-+. ....||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5799999999554444333 4999999999988443 234599999854
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.70 E-value=6.7 Score=40.36 Aligned_cols=42 Identities=26% Similarity=0.690 Sum_probs=29.0
Q ss_pred CCCcccccccc-----cCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCC
Q 004800 679 DEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725 (730)
Q Consensus 679 ~~~~C~ICLEe-----fe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRk 725 (730)
....|-||-++ |.....+..-.|+-.||..|.. +..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 34678899763 2233334555799999999975 367999954
No 120
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.18 E-value=12 Score=35.76 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=34.7
Q ss_pred CCcccccccccCCCC-----------ceEEccCCCcccHHHHHHHHhcCCCCcCCCC
Q 004800 680 EEPCCICQEEYTDGD-----------NLGILDCGHDFHTNCIKQWLMQKNLCPICKT 725 (730)
Q Consensus 680 ~~~C~ICLEefe~ge-----------~Vv~LPCGH~FH~~CI~qWL~~knsCPICRk 725 (730)
...|--|+..|.... ......|++.||.+|=.-+-+.-..||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 1234579999999997777777788999964
No 121
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=54.34 E-value=7.3 Score=35.76 Aligned_cols=39 Identities=26% Similarity=0.665 Sum_probs=30.4
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 730 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslLpT 730 (730)
...|.||-..+... ||.||..|.. ++..|.+|-+.++.|
T Consensus 44 ~~~C~~CK~~v~q~--------g~~YCq~CAY----kkGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP--------GAKYCQTCAY----KKGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC--------CCccChhhhc----ccCcccccCCeeccc
Confidence 45799998776553 6889999964 378999999988764
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=54.13 E-value=8.9 Score=42.46 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=36.8
Q ss_pred CcccccccccCCCCc-eEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 681 EPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~-Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|+||.+.....+. ..-.+|++..|..|+..-......||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 579999998743322 223368999999999888888999999998654
No 123
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.62 E-value=5.9 Score=46.41 Aligned_cols=44 Identities=32% Similarity=0.892 Sum_probs=35.8
Q ss_pred CCCCCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
......|.||+++. ..+..+|. |.-|+.+|+-.+..||+|.+..
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence 34456799999997 33667888 8999999999999999997754
No 124
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.83 E-value=22 Score=39.46 Aligned_cols=51 Identities=25% Similarity=0.508 Sum_probs=33.8
Q ss_pred CCCCCcccccccccCC-----CC-----------ceEEccCCCcccHHHHHHHHhc---------CCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTD-----GD-----------NLGILDCGHDFHTNCIKQWLMQ---------KNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~-----ge-----------~Vv~LPCGH~FH~~CI~qWL~~---------knsCPICRksl 727 (730)
...+.+|++|+..=.. +. .-...||||+--++-.+-|-.. +..||.|-+.+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 3446789999875220 00 0123489999888888888762 34599998755
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=42.82 E-value=19 Score=25.98 Aligned_cols=38 Identities=21% Similarity=0.537 Sum_probs=25.1
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
.|..|.+.+...+.+ ...=+..||..|. .|..|++.+.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence 377888887665332 2234677888875 5888887663
No 126
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.58 E-value=18 Score=40.02 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=34.0
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhc---CCCCcCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICK 724 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~---knsCPICR 724 (730)
..|++-.+.-.+...-+.|.|||+.-++-+++.-+. ...||.|=
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 469987777777667788999999999999885543 23499994
No 127
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.91 E-value=40 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.560 Sum_probs=30.3
Q ss_pred cccccccccCCCCceEEccCC--CcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 682 PCCICQEEYTDGDNLGILDCG--HDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCG--H~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
.|-.|-.++..+.. ...-|. ..||.+|.+..| ++.||.|--.+++
T Consensus 7 nCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 36677777665431 112233 349999999876 7889999887764
No 128
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.87 E-value=11 Score=42.83 Aligned_cols=28 Identities=29% Similarity=0.787 Sum_probs=0.0
Q ss_pred eEEccCCCcccHHHHHHHHhc------CCCCcCCCCC
Q 004800 696 LGILDCGHDFHTNCIKQWLMQ------KNLCPICKTT 726 (730)
Q Consensus 696 Vv~LPCGH~FH~~CI~qWL~~------knsCPICRks 726 (730)
-+-|.|||++.+. .|-.. ...||+||..
T Consensus 304 ~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4677899987654 46432 4569999974
No 129
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=15 Score=41.80 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCCcccccccccCCCC---ceEEccCCCcccHHHHHHHH
Q 004800 679 DEEPCCICQEEYTDGD---NLGILDCGHDFHTNCIKQWL 714 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge---~Vv~LPCGH~FH~~CI~qWL 714 (730)
....|+-|.-.++..+ ++.++.|+|.||+-|-....
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 4456888877776543 78899999999999976544
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=37.79 E-value=15 Score=28.96 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=30.5
Q ss_pred cccccccccCCCCceEEccCCCcccHHHHHHHHh------cCCCCcCCCC
Q 004800 682 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM------QKNLCPICKT 725 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~------~knsCPICRk 725 (730)
.|.||...-..++.|..-.|+-.||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889999555554555557999999999866443 1335888864
No 131
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.46 E-value=7.7 Score=41.43 Aligned_cols=48 Identities=33% Similarity=0.749 Sum_probs=36.2
Q ss_pred CCCcccccccccCCC-Cce--EEcc--------CCCcccHHHHHHHHhcCC-CCcCCCCC
Q 004800 679 DEEPCCICQEEYTDG-DNL--GILD--------CGHDFHTNCIKQWLMQKN-LCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~g-e~V--v~LP--------CGH~FH~~CI~qWL~~kn-sCPICRks 726 (730)
....|.||...|... ... .++. |+|..|..|+..-+.+.. .||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999999832 221 3335 999999999999887654 69999863
No 132
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.27 E-value=20 Score=29.69 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=20.2
Q ss_pred ccccccccCCCC-------ceEEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 683 CCICQEEYTDGD-------NLGILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 683 C~ICLEefe~ge-------~Vv~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
|--|+..|.... ....-.|++.||.+|=.--=+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666642 123336999999999322122456799884
No 133
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=36.50 E-value=32 Score=38.16 Aligned_cols=56 Identities=14% Similarity=0.289 Sum_probs=37.3
Q ss_pred CcccCCCCCCCcccccccccCCCC-----------ceEEccCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 671 SLEIEIPSDEEPCCICQEEYTDGD-----------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 671 ~~e~~~~~~~~~C~ICLEefe~ge-----------~Vv~LPCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
.+.+........|-+|+..|..+. ...+-.|+-.||.+|=.---+.-..|+-|.-+
T Consensus 353 E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~~ 419 (421)
T COG5151 353 EKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCELP 419 (421)
T ss_pred cccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcCC
Confidence 333444445567999999887532 12333599999999965544456779999643
No 134
>PLN02189 cellulose synthase
Probab=34.06 E-value=34 Score=43.28 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=34.3
Q ss_pred CCCcccccccccCC---CCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~---ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRksl 727 (730)
....|.||-+++.. ++. |.+-.|+--.|..|.+-=-+ .+..||-||+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 44589999999874 333 44446998899999843222 345699999864
No 135
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.36 E-value=44 Score=37.12 Aligned_cols=46 Identities=2% Similarity=-0.184 Sum_probs=34.8
Q ss_pred CCCCCcccccccccCCCCceEEccCCCc-ccHHHHHHHHhcCCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCGH~-FH~~CI~qWL~~knsCPICRksl 727 (730)
.....+|-+|-+..... ...+|+|. ||..|.. +....+||+|....
T Consensus 340 ~~s~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred chhhcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 34456799997765554 55589986 9999987 67888999997643
No 136
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.17 E-value=21 Score=27.17 Aligned_cols=25 Identities=36% Similarity=0.759 Sum_probs=17.8
Q ss_pred cccccccccCCCCc--------eEEccCCCccc
Q 004800 682 PCCICQEEYTDGDN--------LGILDCGHDFH 706 (730)
Q Consensus 682 ~C~ICLEefe~ge~--------Vv~LPCGH~FH 706 (730)
.|+=|...|..+|+ +....|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888886653 44556888874
No 137
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.34 E-value=40 Score=36.46 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=32.6
Q ss_pred CcccccccccCCCCceEEc-cCCCcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~L-PCGH~FH~~CI~qWL~~knsCPICRkslL 728 (730)
..|+|---++........| +|||+|-..-+++. ...+|++|.....
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 4688866555554444444 89999999888774 3667999987653
No 138
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=32.26 E-value=16 Score=47.63 Aligned_cols=46 Identities=26% Similarity=0.614 Sum_probs=25.3
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC----CCcCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTT 726 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn----sCPICRks 726 (730)
..|-||.....+.+.+.+..|--.||..|++.-+.... .||-|+..
T Consensus 1109 ~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 44666666655544444445666666666666555322 26666543
No 139
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.99 E-value=21 Score=43.08 Aligned_cols=42 Identities=17% Similarity=0.382 Sum_probs=29.4
Q ss_pred CCcccccccccCCCCce-EEccCCCcccHHHHHHHHhcCCCCcCCC
Q 004800 680 EEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQKNLCPICK 724 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~V-v~LPCGH~FH~~CI~qWL~~knsCPICR 724 (730)
...|.+|+..-...-.| +.+.|+-.||..| |+-....||+|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 35799998754322223 4457999999998 666778899994
No 140
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=30.88 E-value=26 Score=41.62 Aligned_cols=36 Identities=28% Similarity=0.661 Sum_probs=25.6
Q ss_pred CCCCcccccccccCC---CC-------ceEEccCCCcccHHHHHHH
Q 004800 678 SDEEPCCICQEEYTD---GD-------NLGILDCGHDFHTNCIKQW 713 (730)
Q Consensus 678 ~~~~~C~ICLEefe~---ge-------~Vv~LPCGH~FH~~CI~qW 713 (730)
+....|.||.|+|+. .+ +.+.+.-|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 566789999999983 11 1233446889999998654
No 141
>PLN02436 cellulose synthase A
Probab=30.63 E-value=42 Score=42.68 Aligned_cols=49 Identities=27% Similarity=0.580 Sum_probs=34.5
Q ss_pred CCCcccccccccC---CCCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYT---DGDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe---~ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRksl 727 (730)
....|-||-+++. ++|. |.+-.|+--.|..|.+-=-+ ....||-||+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 3458999999975 3443 44557998899999843222 345699999864
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.20 E-value=18 Score=41.08 Aligned_cols=49 Identities=24% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCcccccccccC--------------CCC--ceEEccCCCcccHHHHHHHHhc---------CCCCcCCCCCCC
Q 004800 680 EEPCCICQEEYT--------------DGD--NLGILDCGHDFHTNCIKQWLMQ---------KNLCPICKTTGL 728 (730)
Q Consensus 680 ~~~C~ICLEefe--------------~ge--~Vv~LPCGH~FH~~CI~qWL~~---------knsCPICRkslL 728 (730)
..+|++|+..-. +.. ....-||||+-=.++.+-|-.. +..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999986532 110 1234499999999999999762 235999987663
No 143
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=28.97 E-value=5.9 Score=34.79 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=20.5
Q ss_pred CcccccccccCCCCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 681 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 681 ~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
..|+.|..+++-.. +|.+|..|-.. +.....||-|.++|
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46888888754331 67777777654 34556699888765
No 144
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.39 E-value=9.7 Score=37.43 Aligned_cols=21 Identities=43% Similarity=1.216 Sum_probs=14.1
Q ss_pred CCCCCcccccccc-cCCCCceEEccCCCc
Q 004800 677 PSDEEPCCICQEE-YTDGDNLGILDCGHD 704 (730)
Q Consensus 677 ~~~~~~C~ICLEe-fe~ge~Vv~LPCGH~ 704 (730)
..++.+|-||+.. |.++ |||.
T Consensus 62 v~ddatC~IC~KTKFADG-------~GH~ 83 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADG-------CGHN 83 (169)
T ss_pred cCcCcchhhhhhcccccc-------cCcc
Confidence 3456789999764 4455 7774
No 145
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.01 E-value=15 Score=39.59 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCcccccccccCCCCceEEc--cCCCcccHHHHHHHHhcCCCCcCCCCC
Q 004800 679 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQKNLCPICKTT 726 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~Vv~L--PCGH~FH~~CI~qWL~~knsCPICRks 726 (730)
....|+||=...........- --.|.+|.-|-..|-..+..||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346899998775543100000 024668888999998888899999653
No 146
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=84 Score=34.20 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCCCccccccc-ccCCCCc-eEEccCCCcccHHHHHHHHh
Q 004800 677 PSDEEPCCICQE-EYTDGDN-LGILDCGHDFHTNCIKQWLM 715 (730)
Q Consensus 677 ~~~~~~C~ICLE-efe~ge~-Vv~LPCGH~FH~~CI~qWL~ 715 (730)
....+.|.+|+. ++....+ -+...|+|.|+..|..-|..
T Consensus 92 ~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 92 FNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 445677999888 5544333 34558999999999999987
No 147
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.49 E-value=31 Score=28.06 Aligned_cols=38 Identities=21% Similarity=0.607 Sum_probs=20.5
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHh--cCCCCcCCCCCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~--~knsCPICRksl 727 (730)
...|+.|-+.+... .| + ..|.+.-.. ..-.||+|.+.+
T Consensus 2 ~f~CP~C~~~~~~~----~L-~-----~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL-V-----EHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH----HH-H-----HHHHhHCcCCCCCccCCCchhhh
Confidence 45799998865443 11 2 223332222 234599997643
No 148
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=25.88 E-value=39 Score=29.55 Aligned_cols=11 Identities=36% Similarity=1.141 Sum_probs=8.5
Q ss_pred ccHHHHHHHHh
Q 004800 705 FHTNCIKQWLM 715 (730)
Q Consensus 705 FH~~CI~qWL~ 715 (730)
||..|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 149
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=25.81 E-value=64 Score=37.22 Aligned_cols=51 Identities=25% Similarity=0.263 Sum_probs=27.3
Q ss_pred cCCchhhhhhhc-ccccchhhHHHHHHHHHHHhcCCccchhhhhhhhHHHHhhh
Q 004800 567 LGLPRSLQVLAA-DIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGL 619 (730)
Q Consensus 567 ~gip~slRsLa~-d~eGR~RlisEIr~vL~~irrgEnlr~ed~MlL~~~i~~Gl 619 (730)
+.++..++.|.. ...|+. -.+...++.+|.|..-++-+|+..+..+-...+
T Consensus 9 ~~~~~~~~~l~k~vvr~fy--~~~~~lild~llr~~~v~Eedl~~llk~~~KqL 60 (436)
T KOG2593|consen 9 YDIPTALNDLLKKVVRGFY--GGEHVLILDALLRRQCVREEDLKELLKFNKKQL 60 (436)
T ss_pred ecCcHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhhcchHHHHHHhcccHHHH
Confidence 456666666652 222322 235566667776666666666655544443333
No 150
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.58 E-value=30 Score=43.89 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=25.7
Q ss_pred CCCCCCcccccccccCC--CCceEEccCCCcccHHHHH
Q 004800 676 IPSDEEPCCICQEEYTD--GDNLGILDCGHDFHTNCIK 711 (730)
Q Consensus 676 ~~~~~~~C~ICLEefe~--ge~Vv~LPCGH~FH~~CI~ 711 (730)
..+.+..|+||++.-.. ...|.+=-|+=.+|.+|..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 34566789999998666 3233333699889999986
No 151
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.43 E-value=39 Score=26.90 Aligned_cols=12 Identities=33% Similarity=0.885 Sum_probs=5.3
Q ss_pred cccccccccCCC
Q 004800 682 PCCICQEEYTDG 693 (730)
Q Consensus 682 ~C~ICLEefe~g 693 (730)
.|.+|...+...
T Consensus 28 ~C~~C~~~l~~~ 39 (58)
T PF00412_consen 28 KCSKCGKPLNDG 39 (58)
T ss_dssp BETTTTCBTTTS
T ss_pred ccCCCCCccCCC
Confidence 344444444433
No 152
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.04 E-value=55 Score=29.23 Aligned_cols=43 Identities=23% Similarity=0.580 Sum_probs=26.7
Q ss_pred ccccccccCCCCceEEccCC--CcccHHHHHHHHhcCCCCcCCCCCCC
Q 004800 683 CCICQEEYTDGDNLGILDCG--HDFHTNCIKQWLMQKNLCPICKTTGL 728 (730)
Q Consensus 683 C~ICLEefe~ge~Vv~LPCG--H~FH~~CI~qWL~~knsCPICRkslL 728 (730)
|--|-.++.. +....+-|. |.||.+|...- -+..||.|--.++
T Consensus 8 CECCDrDLpp-~s~dA~ICtfEcTFCadCae~~--l~g~CPnCGGelv 52 (84)
T COG3813 8 CECCDRDLPP-DSTDARICTFECTFCADCAENR--LHGLCPNCGGELV 52 (84)
T ss_pred CcccCCCCCC-CCCceeEEEEeeehhHhHHHHh--hcCcCCCCCchhh
Confidence 4445555442 222223343 67999999874 4678999987665
No 153
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.62 E-value=41 Score=31.66 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=29.6
Q ss_pred CCCcccccccccC--CCCceEEccCCCcccHHHHHHHHhcCC--CCcCCCC
Q 004800 679 DEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKT 725 (730)
Q Consensus 679 ~~~~C~ICLEefe--~ge~Vv~LPCGH~FH~~CI~qWL~~kn--sCPICRk 725 (730)
....|.+|...|. .+-......|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 5568999998765 333467778999999999644 11122 2888754
No 154
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.32 E-value=40 Score=36.45 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCcccccccccCCCCceEEccCCCcccHHHHHHHHhcCC--CCcCC
Q 004800 680 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPIC 723 (730)
Q Consensus 680 ~~~C~ICLEefe~ge~Vv~LPCGH~FH~~CI~qWL~~kn--sCPIC 723 (730)
...|+|=...+..+ ++...|||+|-++-|.+.+.... .||+=
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 35699877777766 45557999999999999988643 38873
No 155
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=24.22 E-value=65 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=21.2
Q ss_pred CCCcccccccccCC---CCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~---ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRksl 727 (730)
....|-||-+++.. ++. |....|+--.|+.|..-=.+ -...||-||+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 45679999998764 332 33447998899999865444 356799999754
No 156
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.19 E-value=34 Score=41.65 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=33.0
Q ss_pred CCCcccccccccCCCCc-------eEEccCCCcc--------------------cHHHHHHHHhc--------CCCCcCC
Q 004800 679 DEEPCCICQEEYTDGDN-------LGILDCGHDF--------------------HTNCIKQWLMQ--------KNLCPIC 723 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~-------Vv~LPCGH~F--------------------H~~CI~qWL~~--------knsCPIC 723 (730)
+..+|.-|++++-++.. +.++.||..| |..|-+.+-.- -..||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 44579999999988764 4566788765 88888776431 2248998
Q ss_pred CC
Q 004800 724 KT 725 (730)
Q Consensus 724 Rk 725 (730)
.=
T Consensus 180 GP 181 (750)
T COG0068 180 GP 181 (750)
T ss_pred CC
Confidence 53
No 157
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.95 E-value=43 Score=42.29 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=32.9
Q ss_pred CCCCCcccccccccCCCCceEEccCC-----CcccHHHHHHHHhcCCCCcCCCCCCCC
Q 004800 677 PSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQKNLCPICKTTGLP 729 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~ge~Vv~LPCG-----H~FH~~CI~qWL~~knsCPICRkslLp 729 (730)
......|+-|=...... .|-.|| ..||.+| .+......||-|...+.+
T Consensus 623 EVg~RfCpsCG~~t~~f---rCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYR---RCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTP 675 (1121)
T ss_pred cccCccCCCCCCcCCcc---cCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCc
Confidence 34556899997774222 455698 4699999 343455679999987764
No 158
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.54 E-value=57 Score=23.51 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=11.5
Q ss_pred cccccccccCCCCceEEccCCCcccHHHH
Q 004800 682 PCCICQEEYTDGDNLGILDCGHDFHTNCI 710 (730)
Q Consensus 682 ~C~ICLEefe~ge~Vv~LPCGH~FH~~CI 710 (730)
.|.+|.+.....-......|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899888766334456689999999996
No 159
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=23.49 E-value=1.8e+02 Score=33.88 Aligned_cols=33 Identities=36% Similarity=0.864 Sum_probs=20.7
Q ss_pred CCCcccccccccCCCCc----eEEccCCCcccHHHHHH
Q 004800 679 DEEPCCICQEEYTDGDN----LGILDCGHDFHTNCIKQ 712 (730)
Q Consensus 679 ~~~~C~ICLEefe~ge~----Vv~LPCGH~FH~~CI~q 712 (730)
..-.|+||.. |..... +++=-|||.-|.+|-.+
T Consensus 127 ~~C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 127 RRCMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred ccCCccccCC-cccCCCCeeEEeccCCCceehhhhhcc
Confidence 3446888855 543221 33336999999999643
No 160
>PLN02248 cellulose synthase-like protein
Probab=23.38 E-value=51 Score=42.07 Aligned_cols=48 Identities=23% Similarity=0.618 Sum_probs=34.5
Q ss_pred CCcccc--cccccCC---CCceEEccCCCcccHHHHHHHHhcCCCCcCCCCCC
Q 004800 680 EEPCCI--CQEEYTD---GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 727 (730)
Q Consensus 680 ~~~C~I--CLEefe~---ge~Vv~LPCGH~FH~~CI~qWL~~knsCPICRksl 727 (730)
...|.+ |-.+... ++++.-..|+++.|.+|...-++....||-||...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1135)
T PLN02248 124 GSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSGGICPGCKEPY 176 (1135)
T ss_pred CCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcCCCCCCCcccc
Confidence 345665 5444332 33444456899999999999999999999999764
No 161
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.33 E-value=39 Score=25.80 Aligned_cols=25 Identities=32% Similarity=0.723 Sum_probs=17.5
Q ss_pred cccccccccCCCCc--------eEEccCCCccc
Q 004800 682 PCCICQEEYTDGDN--------LGILDCGHDFH 706 (730)
Q Consensus 682 ~C~ICLEefe~ge~--------Vv~LPCGH~FH 706 (730)
.|+-|...|..+++ ++.-.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888886553 44446888874
No 162
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.11 E-value=79 Score=40.39 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=34.6
Q ss_pred CCCcccccccccCC---CCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCC
Q 004800 679 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 727 (730)
Q Consensus 679 ~~~~C~ICLEefe~---ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRksl 727 (730)
....|-||=+++.. +|. |.+-.|+-=.|+.|.+==-+ -...||-||+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 44589999999874 332 55567998899999842111 345699999854
No 164
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=22.01 E-value=35 Score=41.10 Aligned_cols=45 Identities=27% Similarity=0.754 Sum_probs=28.3
Q ss_pred CcccccccccCCCC--ceEEccCCCcccHHHHHHHHhcC---C--CCcCCCC
Q 004800 681 EPCCICQEEYTDGD--NLGILDCGHDFHTNCIKQWLMQK---N--LCPICKT 725 (730)
Q Consensus 681 ~~C~ICLEefe~ge--~Vv~LPCGH~FH~~CI~qWL~~k---n--sCPICRk 725 (730)
..|.||-..=.... .+.+-.|+-.||..|+..|+... + .||-||.
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 44666644322211 23334699999999999998742 2 3887775
No 165
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.43 E-value=88 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHHhcC---------CCCcCCCC
Q 004800 702 GHDFHTNCIKQWLMQK---------NLCPICKT 725 (730)
Q Consensus 702 GH~FH~~CI~qWL~~k---------nsCPICRk 725 (730)
.=.||..||..++... -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 6679999999887531 23999986
No 166
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.21 E-value=1e+02 Score=39.31 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=36.2
Q ss_pred CCCCCcccccccccCC---CCc-eEEccCCCcccHHHHHHHHh-cCCCCcCCCCCC
Q 004800 677 PSDEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 727 (730)
Q Consensus 677 ~~~~~~C~ICLEefe~---ge~-Vv~LPCGH~FH~~CI~qWL~-~knsCPICRksl 727 (730)
......|-||=+++.. +|. |.+-.|+--.|+.|.+-=.+ ....||.||+..
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 3456789999999774 332 55557999999999843222 345699999854
No 167
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.89 E-value=49 Score=36.82 Aligned_cols=29 Identities=28% Similarity=0.771 Sum_probs=18.3
Q ss_pred ceEEccCCCcccHHHHHHHHhc------CCCCcCCCCC
Q 004800 695 NLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTT 726 (730)
Q Consensus 695 ~Vv~LPCGH~FH~~CI~qWL~~------knsCPICRks 726 (730)
.-+-|.|||+-.+ ..|=.+ ...||+||..
T Consensus 316 P~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 316 PWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CeEEEeccccccc---cccccccccCcccCcCCeeeee
Confidence 3567899987322 246543 3459999863
Done!