Query 004801
Match_columns 730
No_of_seqs 294 out of 1409
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 6.9E-23 2.4E-27 195.3 5.2 126 12-142 14-142 (172)
2 3rt3_B Ubiquitin-like protein 99.9 1.4E-22 4.8E-27 190.0 4.7 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 5.1E-21 1.7E-25 175.9 4.5 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 2.5E-18 8.6E-23 143.8 10.0 77 17-93 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.7 4.1E-18 1.4E-22 146.0 10.4 80 16-96 3-82 (90)
6 3dbh_I NEDD8; cell cycle, acti 99.7 4.7E-18 1.6E-22 144.0 10.2 83 12-94 6-88 (88)
7 4hcn_B Polyubiquitin, ubiquiti 99.7 4.4E-18 1.5E-22 149.4 9.1 82 13-94 17-98 (98)
8 3v6c_B Ubiquitin; structural g 99.7 1.3E-17 4.4E-22 143.9 10.4 81 12-92 11-91 (91)
9 1wy8_A NP95-like ring finger p 99.7 2.4E-17 8.2E-22 140.7 11.8 82 15-96 4-87 (89)
10 4fbj_B NEDD8; effector-HOST ta 99.7 1.1E-17 3.8E-22 144.2 9.1 77 19-95 1-77 (88)
11 3plu_A Ubiquitin-like modifier 99.7 1.2E-17 4.2E-22 148.4 9.5 76 14-89 17-92 (93)
12 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.6E-17 9E-22 139.6 10.9 80 15-94 4-83 (87)
13 1wx8_A Riken cDNA 4931431F19; 99.7 2E-17 6.7E-22 143.8 10.1 87 9-96 8-94 (96)
14 1ndd_A NEDD8, protein (ubiquit 99.7 2.4E-17 8.3E-22 135.0 9.5 76 19-94 1-76 (76)
15 1ttn_A DC-UBP, dendritic cell- 99.7 2.3E-17 8E-22 147.0 10.0 86 10-95 15-100 (106)
16 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.9E-17 9.9E-22 137.8 9.9 78 17-94 2-79 (85)
17 4eew_A Large proline-rich prot 99.7 2.7E-17 9.4E-22 140.3 9.6 76 14-90 13-88 (88)
18 3n3k_B Ubiquitin; hydrolase, p 99.7 1.7E-17 6E-22 139.4 8.2 79 17-95 2-80 (85)
19 1uh6_A Ubiquitin-like 5; beta- 99.7 2.1E-17 7.1E-22 148.6 9.0 82 8-89 18-99 (100)
20 2dzi_A Ubiquitin-like protein 99.7 4.3E-17 1.5E-21 135.8 10.1 79 14-92 3-81 (81)
21 2uyz_B Small ubiquitin-related 99.7 2.8E-17 9.6E-22 137.4 9.0 78 17-94 2-79 (79)
22 2hj8_A Interferon-induced 17 k 99.7 3.4E-17 1.2E-21 140.9 9.4 79 16-94 2-80 (88)
23 1wgd_A Homocysteine-responsive 99.7 3.9E-17 1.3E-21 141.6 9.8 82 15-96 4-91 (93)
24 3a9j_A Ubiquitin; protein comp 99.7 5.1E-17 1.7E-21 133.0 9.9 76 19-94 1-76 (76)
25 1wyw_B Ubiquitin-like protein 99.7 3.6E-17 1.2E-21 143.7 9.5 83 12-94 15-97 (97)
26 2wyq_A HHR23A, UV excision rep 99.7 6E-17 2E-21 136.6 10.1 78 16-93 3-83 (85)
27 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 5.2E-17 1.8E-21 140.4 9.8 77 19-95 2-78 (96)
28 2faz_A Ubiquitin-like containi 99.7 6.2E-17 2.1E-21 134.8 9.3 75 18-92 2-78 (78)
29 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.8E-16 6E-21 141.0 12.8 83 15-98 14-96 (106)
30 3m62_B UV excision repair prot 99.7 2.6E-17 8.8E-22 147.1 7.2 78 18-95 1-78 (106)
31 2kan_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 140.4 10.3 82 13-95 10-92 (94)
32 2kk8_A Uncharacterized protein 99.7 7.6E-17 2.6E-21 138.8 9.1 75 16-90 8-83 (84)
33 1uel_A HHR23B, UV excision rep 99.7 2E-16 6.8E-21 138.1 11.6 77 19-95 1-80 (95)
34 2l7r_A Ubiquitin-like protein 99.7 7.7E-17 2.6E-21 140.6 8.4 81 12-94 13-93 (93)
35 3vdz_A Ubiquitin-40S ribosomal 99.7 1.5E-16 5.2E-21 143.2 10.2 79 16-94 33-111 (111)
36 2kdi_A Ubiquitin, vacuolar pro 99.7 5.9E-17 2E-21 146.9 7.5 101 17-122 8-113 (114)
37 1sif_A Ubiquitin; hydrophobic 99.7 1.3E-16 4.6E-21 137.4 8.8 77 18-94 9-85 (88)
38 2lxa_A Ubiquitin-like protein 99.7 7.8E-17 2.7E-21 140.7 6.6 74 18-91 1-78 (87)
39 1yqb_A Ubiquilin 3; structural 99.7 2.6E-16 8.9E-21 139.5 10.0 82 13-95 17-98 (100)
40 4a20_A Ubiquitin-like protein 99.7 1.5E-16 5E-21 141.9 8.5 78 15-92 16-97 (98)
41 1v5o_A 1700011N24RIK protein; 99.7 2.7E-16 9.2E-21 139.3 9.9 83 16-98 5-92 (102)
42 1wia_A Hypothetical ubiquitin- 99.7 4.1E-16 1.4E-20 135.5 10.7 80 14-96 3-83 (95)
43 2bwf_A Ubiquitin-like protein 99.6 6.1E-16 2.1E-20 127.7 10.0 73 18-91 4-76 (77)
44 1yx5_B Ubiquitin; proteasome, 99.6 5.2E-16 1.8E-20 135.5 9.8 76 19-94 1-76 (98)
45 2klc_A Ubiquilin-1; ubiquitin- 99.6 6.5E-16 2.2E-20 137.0 10.6 79 15-94 22-100 (101)
46 3b1l_X E3 ubiquitin-protein li 99.4 1.6E-17 5.4E-22 137.4 0.0 75 19-93 1-75 (76)
47 1j8c_A Ubiquitin-like protein 99.6 6.5E-16 2.2E-20 142.5 10.7 81 16-97 30-110 (125)
48 1v2y_A 3300001G02RIK protein; 99.6 3.4E-16 1.2E-20 141.5 8.3 80 15-94 4-99 (105)
49 2ojr_A Ubiquitin; lanthide-bin 99.6 1.2E-15 4.1E-20 137.0 10.6 79 16-94 33-111 (111)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.5E-15 5E-20 139.6 11.3 84 11-94 9-102 (116)
51 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.6E-20 143.3 10.4 79 16-94 79-157 (159)
52 3l0w_B Monoubiquitinated proli 99.6 1.8E-15 6.3E-20 145.9 10.7 77 19-95 1-77 (169)
53 1v86_A DNA segment, CHR 7, way 99.6 1.9E-15 6.6E-20 132.6 9.7 83 9-93 8-90 (95)
54 1wxv_A BAG-family molecular ch 99.6 3.1E-15 1.1E-19 129.2 10.8 78 15-93 4-87 (92)
55 1we6_A Splicing factor, putati 99.6 1.4E-15 4.8E-20 136.4 8.8 79 16-94 25-107 (111)
56 1x1m_A Ubiquitin-like protein 99.6 2.2E-15 7.5E-20 134.7 9.7 81 14-94 8-103 (107)
57 1wju_A NEDD8 ultimate buster-1 99.6 2.3E-15 7.8E-20 135.3 9.2 75 19-94 16-94 (100)
58 1v5t_A 8430435I17RIK protein; 99.6 2.5E-15 8.5E-20 130.3 8.9 77 15-92 4-84 (90)
59 1wgg_A Ubiquitin carboxyl-term 99.6 4.5E-15 1.5E-19 130.8 10.3 77 14-92 3-80 (96)
60 2gow_A HCG-1 protein, ubiquiti 99.6 4.1E-15 1.4E-19 138.1 9.3 81 14-94 13-103 (125)
61 2fnj_B Transcription elongatio 99.6 2.8E-15 9.5E-20 138.4 7.8 72 19-90 1-80 (118)
62 1se9_A Ubiquitin family; ubiqu 99.6 6.7E-15 2.3E-19 137.2 9.8 81 14-94 12-106 (126)
63 2kdb_A Homocysteine-responsive 99.6 2.9E-15 9.9E-20 133.6 6.9 75 14-88 19-99 (99)
64 3q3f_A Ribonuclease/ubiquitin 99.6 5.5E-15 1.9E-19 145.8 9.4 79 16-94 103-181 (189)
65 3m63_B Ubiquitin domain-contai 99.6 1.5E-15 5.3E-20 134.9 4.5 75 16-91 26-100 (101)
66 4ajy_B Transcription elongatio 99.6 5.2E-15 1.8E-19 136.6 7.9 73 19-91 1-81 (118)
67 3u30_A Ubiquitin, linear DI-ub 99.6 6E-15 2.1E-19 140.5 8.6 78 17-94 95-172 (172)
68 1we7_A SF3A1 protein; structur 99.5 1.3E-14 4.5E-19 131.0 10.2 78 17-94 24-111 (115)
69 2daf_A FLJ35834 protein; hypot 99.5 4.9E-14 1.7E-18 130.1 13.7 82 12-93 9-91 (118)
70 3b08_A Polyubiquitin-C, ubiqui 99.5 1.5E-14 5.1E-19 132.8 10.3 78 17-94 75-152 (152)
71 3u5e_m 60S ribosomal protein L 99.5 5E-16 1.7E-20 142.9 0.0 77 19-95 1-77 (128)
72 4dbg_A Ranbp-type and C3HC4-ty 99.5 2.7E-14 9.1E-19 129.5 9.9 80 12-91 18-100 (105)
73 2kd0_A LRR repeats and ubiquit 99.5 3.5E-14 1.2E-18 122.1 9.9 74 16-90 10-83 (85)
74 3u5c_f 40S ribosomal protein S 99.5 3.1E-15 1.1E-19 142.8 0.0 77 19-95 1-77 (152)
75 1oqy_A HHR23A, UV excision rep 99.5 3.2E-14 1.1E-18 152.6 7.5 79 16-94 5-87 (368)
76 2dzm_A FAS-associated factor 1 99.5 1.3E-13 4.3E-18 123.6 10.0 75 18-93 8-84 (100)
77 2kjr_A CG11242; UBL, ubiquitin 99.4 3.4E-13 1.2E-17 119.3 10.0 76 13-88 10-93 (95)
78 4b6w_A Tubulin-specific chaper 99.4 1.2E-13 4E-18 120.2 6.7 75 18-92 2-85 (86)
79 2dzj_A Synaptic glycoprotein S 99.4 1.5E-13 5E-18 119.8 7.2 72 16-87 8-85 (88)
80 3ai5_A Yeast enhanced green fl 99.4 1.7E-13 5.9E-18 144.0 7.9 81 12-92 227-307 (307)
81 1wf9_A NPL4 family protein; be 99.4 5.3E-13 1.8E-17 119.6 8.6 75 17-92 6-96 (107)
82 2kj6_A Tubulin folding cofacto 99.4 1.2E-12 4.3E-17 116.4 9.9 76 15-90 11-95 (97)
83 1v6e_A Cytoskeleton-associated 99.4 1.6E-12 5.3E-17 113.8 9.4 76 16-91 5-88 (95)
84 2io1_B Small ubiquitin-related 99.4 1.3E-12 4.3E-17 115.5 8.6 81 14-94 3-83 (94)
85 1t0y_A Tubulin folding cofacto 99.3 3E-12 1E-16 117.2 9.9 77 16-92 4-88 (122)
86 2xzm_9 RPS31E; ribosome, trans 99.3 1.1E-13 3.6E-18 136.9 0.0 73 19-96 1-73 (189)
87 1wz0_A Ubiquitin-like protein 99.3 2.5E-11 8.7E-16 109.4 11.4 82 14-95 20-101 (104)
88 2io0_B Small ubiquitin-related 99.3 1.9E-11 6.4E-16 107.6 10.1 79 16-94 3-81 (91)
89 2d07_B Ubiquitin-like protein 99.2 1.7E-11 5.9E-16 107.8 9.4 80 14-93 13-92 (93)
90 3shq_A UBLCP1; phosphatase, hy 99.2 9.7E-12 3.3E-16 131.0 7.6 76 16-92 3-81 (320)
91 2kzr_A Ubiquitin thioesterase 99.2 1.2E-11 4E-16 106.3 6.3 72 19-91 1-78 (86)
92 2k8h_A Small ubiquitin protein 99.2 4.5E-11 1.5E-15 108.9 10.2 83 12-94 20-102 (110)
93 2eke_C Ubiquitin-like protein 99.2 6E-11 2.1E-15 107.5 10.3 82 11-93 24-105 (106)
94 1wm3_A Ubiquitin-like protein 99.2 6.2E-11 2.1E-15 99.2 9.2 72 18-89 1-72 (72)
95 3a4r_A Nfatc2-interacting prot 99.2 1.2E-10 4.2E-15 99.4 10.5 74 15-88 4-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 6.9E-10 2.4E-14 97.2 9.2 77 15-91 6-93 (97)
97 3kyd_D Small ubiquitin-related 98.8 2.5E-08 8.7E-13 91.8 10.4 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.6 8E-08 2.7E-12 95.8 9.8 82 13-95 24-105 (200)
99 3tix_A Ubiquitin-like protein 98.6 5.2E-08 1.8E-12 97.0 7.9 80 14-94 53-132 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 4.8E-08 1.7E-12 98.3 0.2 85 9-94 12-96 (227)
101 2pjh_A Protein NPL4, nuclear p 98.2 5.8E-07 2E-11 77.2 3.5 71 17-88 3-78 (80)
102 2jxx_A Nfatc2-interacting prot 98.2 8.1E-06 2.8E-10 73.0 9.8 76 13-88 20-96 (97)
103 3uf8_A Ubiquitin-like protein 98.0 1.1E-05 3.8E-10 80.1 9.1 85 10-95 13-97 (209)
104 3goe_A DNA repair protein RAD6 98.0 2.1E-05 7.3E-10 68.4 9.5 73 17-89 8-81 (82)
105 3ix6_A TS, tsase, thymidylate 97.9 1.6E-06 5.5E-11 93.1 0.0 84 10-94 13-96 (360)
106 2l76_A Nfatc2-interacting prot 97.8 0.00013 4.6E-09 65.3 10.9 79 12-91 15-93 (95)
107 4da1_A Protein phosphatase 1K, 97.8 3.6E-06 1.2E-10 89.9 0.0 79 15-94 27-105 (389)
108 4efo_A Serine/threonine-protei 97.7 0.00012 4.1E-09 65.4 8.4 69 21-89 15-87 (94)
109 2bps_A YUKD protein; ubiquitin 97.3 0.00044 1.5E-08 60.2 7.0 70 18-87 4-80 (81)
110 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.00032 1.1E-08 65.8 6.3 71 20-90 13-122 (128)
111 2al3_A TUG long isoform; TUG U 97.1 0.001 3.6E-08 59.0 7.2 76 18-93 9-84 (90)
112 3qx1_A FAS-associated factor 1 97.0 0.0033 1.1E-07 53.8 9.0 74 15-89 4-82 (84)
113 2dzk_A UBX domain-containing p 96.7 0.014 4.8E-07 52.6 11.4 78 15-92 10-92 (109)
114 3plu_A Ubiquitin-like modifier 96.7 3.4E-05 1.1E-09 68.8 -5.7 42 101-142 23-67 (93)
115 1wju_A NEDD8 ultimate buster-1 96.5 0.00023 7.9E-09 64.0 -1.4 36 107-142 29-65 (100)
116 2xzm_9 RPS31E; ribosome, trans 96.5 0.00046 1.6E-08 68.4 0.0 42 101-142 2-46 (189)
117 4eew_A Large proline-rich prot 96.4 6E-05 2E-09 63.9 -5.6 59 79-142 2-63 (88)
118 1uh6_A Ubiquitin-like 5; beta- 96.2 0.00014 4.9E-09 65.3 -4.6 38 105-142 36-74 (100)
119 1wj4_A KIAA0794 protein; UBX d 96.2 0.014 4.7E-07 54.0 8.4 75 15-90 40-119 (124)
120 3m63_B Ubiquitin domain-contai 95.9 0.00035 1.2E-08 61.9 -3.6 65 71-142 7-73 (101)
121 2lxa_A Ubiquitin-like protein 95.9 0.00037 1.3E-08 60.7 -3.5 38 105-142 9-50 (87)
122 2cr5_A Reproduction 8; UBX dom 95.6 0.058 2E-06 48.4 9.6 74 16-90 21-98 (109)
123 1s3s_G P47 protein; AAA ATPase 95.5 0.037 1.3E-06 51.2 7.9 72 15-86 49-124 (127)
124 2daj_A KIAA0977 protein, COBL- 95.4 0.043 1.5E-06 48.5 7.5 69 13-81 5-76 (91)
125 3b1l_X E3 ubiquitin-protein li 94.3 0.0031 1.1E-07 51.5 0.0 38 105-142 8-46 (76)
126 3phx_B Ubiquitin-like protein 95.1 0.00054 1.8E-08 56.7 -5.1 38 105-142 12-50 (79)
127 4b6w_A Tubulin-specific chaper 95.0 0.0028 9.6E-08 54.9 -1.0 35 108-142 15-50 (86)
128 2kjr_A CG11242; UBL, ubiquitin 95.0 0.0017 5.9E-08 57.2 -2.5 35 108-142 28-63 (95)
129 4dwf_A HLA-B-associated transc 94.8 0.00071 2.4E-08 57.5 -5.3 38 105-142 13-51 (90)
130 4ajy_B Transcription elongatio 94.8 0.001 3.4E-08 61.7 -4.7 34 109-142 13-47 (118)
131 2kk8_A Uncharacterized protein 94.8 0.00071 2.4E-08 57.9 -5.4 38 105-142 18-56 (84)
132 2fnj_B Transcription elongatio 94.8 0.001 3.5E-08 61.5 -4.7 34 109-142 13-47 (118)
133 2kj6_A Tubulin folding cofacto 94.7 0.0021 7.1E-08 57.1 -2.6 35 108-142 27-62 (97)
134 3ivf_A Talin-1; FERM domain, c 94.7 0.059 2E-06 56.9 7.9 108 18-132 3-121 (371)
135 3u5e_m 60S ribosomal protein L 94.7 0.0055 1.9E-07 56.1 0.0 38 105-142 8-46 (128)
136 3dbh_I NEDD8; cell cycle, acti 94.5 0.0015 5.1E-08 54.8 -4.0 38 105-142 20-58 (88)
137 2dzm_A FAS-associated factor 1 94.5 0.0017 5.8E-08 58.1 -3.8 37 105-141 16-53 (100)
138 3u5c_f 40S ribosomal protein S 94.4 0.0069 2.4E-07 57.8 0.0 38 105-142 8-46 (152)
139 3v6c_B Ubiquitin; structural g 94.4 0.0014 4.9E-08 56.0 -4.3 43 100-142 18-63 (91)
140 1wyw_B Ubiquitin-like protein 94.3 0.0032 1.1E-07 54.9 -2.4 38 105-142 29-67 (97)
141 4e71_A Plexin-B2, MM1; transme 94.3 0.2 6.9E-06 46.0 9.3 74 17-90 10-110 (111)
142 3m62_B UV excision repair prot 94.2 0.0026 8.9E-08 56.5 -3.2 38 105-142 9-47 (106)
143 4fbj_B NEDD8; effector-HOST ta 94.2 0.0014 5E-08 56.0 -4.8 38 105-142 8-46 (88)
144 2r2o_A Plexin-B1; effector dom 94.1 0.17 5.8E-06 48.1 8.6 77 16-92 22-130 (138)
145 1wh3_A 59 kDa 2'-5'-oligoadeny 93.9 0.0022 7.5E-08 53.9 -4.2 38 105-142 15-53 (87)
146 1v5t_A 8430435I17RIK protein; 93.8 0.0032 1.1E-07 54.2 -3.4 41 100-140 8-51 (90)
147 1wgh_A Ubiquitin-like 3, HCG-1 93.5 0.0047 1.6E-07 56.7 -3.0 39 105-143 24-71 (116)
148 4a20_A Ubiquitin-like protein 93.5 0.0037 1.3E-07 55.6 -3.7 38 105-142 27-68 (98)
149 2hj8_A Interferon-induced 17 k 93.4 0.0023 8E-08 54.6 -4.8 37 106-142 13-50 (88)
150 3jyu_A Ubiquitin carboxyl-term 93.4 0.34 1.2E-05 48.7 10.1 76 19-94 140-224 (231)
151 2uyz_B Small ubiquitin-related 93.3 0.0027 9.1E-08 52.5 -4.5 38 105-142 11-49 (79)
152 2l7r_A Ubiquitin-like protein 93.3 0.0023 7.7E-08 55.5 -5.3 43 100-142 20-63 (93)
153 4a3p_A Ubiquitin carboxyl-term 93.1 0.4 1.4E-05 47.7 10.0 76 19-94 128-212 (217)
154 2faz_A Ubiquitin-like containi 93.0 0.0027 9.4E-08 52.2 -4.9 38 105-142 10-50 (78)
155 1wgd_A Homocysteine-responsive 93.0 0.0061 2.1E-07 52.4 -3.0 34 109-142 21-57 (93)
156 1wy8_A NP95-like ring finger p 92.9 0.0044 1.5E-07 52.3 -3.9 38 105-142 15-55 (89)
157 3mtn_B UBA80, ubcep1, ubiquiti 92.9 0.006 2.1E-07 50.5 -3.0 37 106-142 12-49 (85)
158 4dbg_A Ranbp-type and C3HC4-ty 92.8 0.0037 1.3E-07 56.7 -4.7 35 108-142 37-72 (105)
159 1wgg_A Ubiquitin carboxyl-term 92.8 0.0035 1.2E-07 54.9 -4.8 35 107-141 16-52 (96)
160 1sif_A Ubiquitin; hydrophobic 92.7 0.0036 1.2E-07 53.5 -4.8 43 100-142 10-55 (88)
161 4hcn_B Polyubiquitin, ubiquiti 92.6 0.004 1.4E-07 54.2 -4.7 38 105-142 30-68 (98)
162 2kdb_A Homocysteine-responsive 92.5 0.0064 2.2E-07 54.0 -3.6 34 109-142 37-73 (99)
163 3n3k_B Ubiquitin; hydrolase, p 92.5 0.0051 1.8E-07 51.0 -4.0 37 106-142 12-49 (85)
164 1se9_A Ubiquitin family; ubiqu 92.4 0.01 3.5E-07 55.4 -2.4 38 105-142 24-70 (126)
165 2gow_A HCG-1 protein, ubiquiti 92.4 0.0087 3E-07 55.6 -3.0 38 105-142 25-71 (125)
166 2kan_A Uncharacterized protein 92.3 0.0048 1.7E-07 53.8 -4.5 34 109-142 26-60 (94)
167 1ttn_A DC-UBP, dendritic cell- 92.3 0.0053 1.8E-07 54.3 -4.3 38 105-142 31-69 (106)
168 2dzi_A Ubiquitin-like protein 92.2 0.006 2.1E-07 50.1 -3.8 37 106-142 16-53 (81)
169 3k9o_B Ubiquitin, UBB+1; E2-25 92.2 0.0044 1.5E-07 53.0 -4.9 38 105-142 9-47 (96)
170 1uel_A HHR23B, UV excision rep 92.1 0.0058 2E-07 52.9 -4.3 38 105-142 8-49 (95)
171 1v5o_A 1700011N24RIK protein; 91.9 0.0095 3.3E-07 52.4 -3.1 36 107-142 21-57 (102)
172 2wyq_A HHR23A, UV excision rep 91.9 0.0058 2E-07 50.9 -4.4 38 105-142 13-54 (85)
173 1oey_A P67-PHOX, neutrophil cy 91.9 0.78 2.7E-05 40.1 8.9 73 15-90 2-81 (83)
174 1v86_A DNA segment, CHR 7, way 91.8 0.0062 2.1E-07 53.1 -4.4 36 106-141 25-61 (95)
175 1ndd_A NEDD8, protein (ubiquit 91.7 0.005 1.7E-07 49.7 -4.8 38 105-142 8-46 (76)
176 3l0w_B Monoubiquitinated proli 91.4 0.007 2.4E-07 58.3 -5.0 38 105-142 8-46 (169)
177 1v6e_A Cytoskeleton-associated 91.4 0.012 4E-07 51.1 -3.1 34 109-142 20-54 (95)
178 1ryj_A Unknown; beta/alpha pro 91.3 1.5 5.1E-05 36.2 9.7 64 18-91 4-67 (70)
179 1vjk_A Molybdopterin convertin 90.9 1.5 5E-05 38.2 9.7 68 17-89 8-93 (98)
180 2ojr_A Ubiquitin; lanthide-bin 90.8 0.0035 1.2E-07 56.0 -7.2 37 106-142 44-81 (111)
181 1yx5_B Ubiquitin; proteasome, 90.2 0.012 4.1E-07 50.9 -4.1 38 105-142 8-46 (98)
182 4e74_A Plexin-A4; RBD, structu 90.2 0.74 2.5E-05 42.6 7.5 75 17-91 12-115 (117)
183 1we7_A SF3A1 protein; structur 90.2 0.014 4.8E-07 52.3 -3.9 57 83-142 24-81 (115)
184 3q3f_A Ribonuclease/ubiquitin 90.1 0.025 8.6E-07 55.8 -2.5 38 105-142 113-151 (189)
185 3vdz_A Ubiquitin-40S ribosomal 89.8 0.0096 3.3E-07 53.3 -5.3 38 105-142 43-81 (111)
186 3h6n_A Plexin-D1; structural g 89.8 1.2 4E-05 41.9 8.5 74 18-91 4-105 (127)
187 2klc_A Ubiquilin-1; ubiquitin- 89.8 0.021 7.2E-07 50.2 -3.0 36 107-142 34-70 (101)
188 1wx8_A Riken cDNA 4931431F19; 89.7 0.017 5.7E-07 49.7 -3.6 36 107-142 26-62 (96)
189 2dzj_A Synaptic glycoprotein S 89.2 0.033 1.1E-06 48.2 -2.2 32 111-142 26-60 (88)
190 3a9j_A Ubiquitin; protein comp 89.2 0.011 3.8E-07 47.6 -4.8 37 106-142 9-46 (76)
191 2kd0_A LRR repeats and ubiquit 89.1 0.014 4.6E-07 49.8 -4.6 37 106-142 20-57 (85)
192 1we6_A Splicing factor, putati 89.1 0.027 9.2E-07 50.1 -2.9 52 81-142 24-77 (111)
193 1wxv_A BAG-family molecular ch 88.8 0.02 6.9E-07 48.9 -3.7 36 107-142 16-57 (92)
194 1t0y_A Tubulin folding cofacto 88.6 0.039 1.3E-06 50.3 -2.2 34 109-142 19-53 (122)
195 1j8c_A Ubiquitin-like protein 88.6 0.029 1E-06 51.5 -3.1 36 107-142 41-77 (125)
196 2bwf_A Ubiquitin-like protein 88.6 0.015 5.1E-07 47.3 -4.6 36 107-142 13-49 (77)
197 2kdi_A Ubiquitin, vacuolar pro 88.4 0.022 7.6E-07 51.3 -3.9 38 105-142 17-55 (114)
198 1vd2_A Protein kinase C, IOTA 88.0 1.8 6E-05 38.3 8.0 75 14-89 2-86 (89)
199 2l32_A Small archaeal modifier 88.0 1.2 3.9E-05 37.7 6.6 63 19-91 1-63 (74)
200 1v2y_A 3300001G02RIK protein; 88.0 0.0087 3E-07 54.1 -6.8 33 105-137 15-48 (105)
201 1wx7_A Ubiquilin 3; ubiquitin- 87.5 0.042 1.4E-06 48.4 -2.6 33 110-142 29-62 (106)
202 1tyg_B YJBS; alpha beta barrel 87.4 1.3 4.4E-05 38.8 6.7 71 12-92 14-85 (87)
203 1yqb_A Ubiquilin 3; structural 87.3 0.018 6.1E-07 50.7 -5.1 33 110-142 34-67 (100)
204 1wf9_A NPL4 family protein; be 87.3 0.034 1.1E-06 49.5 -3.4 36 106-142 16-53 (107)
205 4efo_A Serine/threonine-protei 86.4 0.025 8.6E-07 50.5 -4.7 39 105-143 21-60 (94)
206 3rpf_C Molybdopterin convertin 85.8 2.2 7.5E-05 35.2 7.1 68 19-91 1-71 (74)
207 3po0_A Small archaeal modifier 85.7 5.2 0.00018 33.7 9.6 58 29-91 18-86 (89)
208 3kuz_A Plexin-C1; structural g 85.4 3.4 0.00012 38.8 8.8 73 17-89 18-125 (126)
209 1wgr_A Growth factor receptor- 84.8 4.6 0.00016 36.3 9.1 80 13-92 4-94 (100)
210 1wgk_A Riken cDNA 2900073H19 p 84.3 4.5 0.00015 36.8 9.0 76 17-94 10-108 (114)
211 1wia_A Hypothetical ubiquitin- 83.8 0.059 2E-06 46.2 -3.5 36 105-142 15-50 (95)
212 3ai5_A Yeast enhanced green fl 82.7 0.075 2.6E-06 56.1 -3.9 44 99-142 233-279 (307)
213 1x1m_A Ubiquitin-like protein 82.4 0.097 3.3E-06 46.4 -2.8 29 114-142 40-73 (107)
214 1oqy_A HHR23A, UV excision rep 80.6 0.098 3.3E-06 56.4 -4.0 38 105-142 15-56 (368)
215 2juo_A GA-binding protein alph 80.5 3.3 0.00011 36.7 6.2 61 31-91 5-65 (89)
216 1ef1_A Moesin; membrane, FERM 80.4 5.6 0.00019 40.1 9.0 72 18-90 1-78 (294)
217 1h4r_A Merlin; FERM, neurofibr 80.3 5.9 0.0002 40.5 9.2 74 16-90 20-98 (314)
218 3hm6_X Plexin-B1; structural g 80.2 4.1 0.00014 46.9 8.6 77 16-92 255-363 (644)
219 1ip9_A BEM1 protein; ubiquitin 79.8 6.8 0.00023 34.5 8.0 67 17-87 11-82 (85)
220 3dwg_C 9.5 kDa culture filtrat 78.4 8 0.00027 32.9 8.0 72 19-92 1-91 (93)
221 1f0z_A THis protein; ubiquitin 78.2 5.5 0.00019 32.2 6.6 58 27-91 6-63 (66)
222 3qij_A Protein 4.1; cytoskelet 78.1 4.6 0.00016 41.4 7.6 79 12-90 11-95 (296)
223 2qjl_A URM1, ubiquitin-related 78.0 14 0.00048 32.0 9.6 71 18-91 1-96 (99)
224 2kzr_A Ubiquitin thioesterase 77.4 0.11 3.7E-06 44.2 -4.0 36 105-141 8-45 (86)
225 2kl0_A Putative thiamin biosyn 76.2 6.2 0.00021 33.0 6.5 60 27-94 6-65 (73)
226 1fm0_D Molybdopterin convertin 76.1 7.2 0.00025 32.0 6.9 56 29-90 17-77 (81)
227 3ivf_A Talin-1; FERM domain, c 76.1 9.1 0.00031 40.2 9.3 74 17-90 84-167 (371)
228 3shq_A UBLCP1; phosphatase, hy 75.9 0.17 5.9E-06 53.4 -3.8 36 106-141 13-49 (320)
229 3ig3_A Plxna3 protein; plexin 73.7 10 0.00035 43.6 9.5 77 16-92 231-336 (627)
230 2l52_A Methanosarcina acetivor 72.9 12 0.0004 32.7 7.8 69 18-90 3-95 (99)
231 2i1j_A Moesin; FERM, coiled-co 72.6 8.7 0.0003 43.5 8.7 74 17-91 3-82 (575)
232 2k9x_A Tburm1, uncharacterized 69.9 1.7 5.8E-05 39.4 1.7 75 17-93 3-101 (110)
233 2kvr_A Ubiquitin carboxyl-term 69.9 3.6 0.00012 38.2 4.0 34 31-64 58-91 (130)
234 2q5w_D Molybdopterin convertin 69.9 7.5 0.00026 31.7 5.5 56 29-90 16-73 (77)
235 2k5p_A THis protein, thiamine- 69.3 5.9 0.0002 33.7 4.8 68 19-94 1-69 (78)
236 1wgy_A RAP guanine nucleotide 68.9 15 0.00052 33.4 7.7 75 16-90 7-86 (104)
237 2kmc_A Fermitin family homolog 68.7 23 0.00079 32.1 8.7 72 19-90 20-99 (102)
238 2cu3_A Unknown function protei 61.8 15 0.0005 29.5 5.6 58 26-91 4-61 (64)
239 4eut_A Serine/threonine-protei 61.6 23 0.0008 36.6 8.6 52 28-79 321-374 (396)
240 2io1_B Small ubiquitin-related 60.3 0.51 1.8E-05 41.3 -3.5 40 105-144 15-55 (94)
241 2daf_A FLJ35834 protein; hypot 57.1 0.51 1.7E-05 43.8 -4.3 36 107-142 26-62 (118)
242 2kmm_A Guanosine-3',5'-BIS(dip 55.7 16 0.00053 29.3 4.9 63 19-90 1-63 (73)
243 3qa8_A MGC80376 protein; kinas 55.7 11 0.00036 43.7 5.2 51 27-77 320-371 (676)
244 1q1o_A Cell division control p 53.6 18 0.00061 32.6 5.2 48 18-65 5-64 (98)
245 2g1e_A Hypothetical protein TA 48.3 53 0.0018 27.2 7.1 57 33-90 19-86 (90)
246 2hj1_A Hypothetical protein; s 47.0 36 0.0012 30.2 6.1 71 16-91 10-86 (97)
247 2dhz_A RAP guanine nucleotide 45.9 46 0.0016 30.9 6.9 74 17-90 8-92 (120)
248 1wjn_A Tubulin-folding protein 45.2 6.8 0.00023 33.7 1.1 37 106-142 21-58 (97)
249 2ylm_A Ubiquitin carboxyl-term 45.0 29 0.00099 38.9 6.4 77 14-90 126-217 (530)
250 1wm3_A Ubiquitin-like protein 43.3 1.1 3.7E-05 37.0 -4.0 38 105-142 9-47 (72)
251 1y8x_B Ubiquitin-activating en 43.0 27 0.00093 31.1 4.7 59 30-88 6-82 (98)
252 3au4_A Myosin-X; protein-prote 41.0 45 0.0015 36.9 7.2 47 17-63 215-263 (555)
253 2ylm_A Ubiquitin carboxyl-term 40.9 18 0.00061 40.6 3.9 31 32-62 39-69 (530)
254 2io0_B Small ubiquitin-related 40.7 2 6.9E-05 37.5 -2.9 40 105-144 13-53 (91)
255 1rws_A Hypothetical protein PF 40.3 11 0.00038 31.4 1.7 48 33-89 25-72 (77)
256 3a4r_A Nfatc2-interacting prot 39.7 1.1 3.7E-05 37.9 -4.7 38 105-142 15-54 (79)
257 1f2r_I Inhibitor of caspase-ac 39.2 1.4E+02 0.0047 27.0 8.7 70 17-91 17-90 (100)
258 3onh_A Ubiquitin-activating en 38.8 46 0.0016 31.3 5.7 51 38-89 19-78 (127)
259 2eel_A Cell death activator CI 37.1 74 0.0025 28.2 6.5 67 19-91 10-79 (91)
260 2c7h_A RBBP6, retinoblastoma-b 37.0 61 0.0021 28.5 5.9 45 17-61 5-51 (86)
261 2k8h_A Small ubiquitin protein 35.5 3.7 0.00013 37.2 -2.2 39 105-143 34-73 (110)
262 3ge3_C Toluene-4-monooxygenase 32.6 2.4E+02 0.0082 24.8 8.8 71 19-89 4-82 (84)
263 1wz0_A Ubiquitin-like protein 31.7 4.6 0.00016 36.1 -2.1 40 105-144 32-72 (104)
264 2d07_B Ubiquitin-like protein 31.7 2.7 9.4E-05 36.5 -3.5 40 106-145 26-66 (93)
265 4gmv_A RAS-associated and plec 31.7 78 0.0027 32.9 6.7 72 17-88 30-112 (281)
266 2lgx_A Fermitin family homolog 31.1 18 0.00061 33.3 1.5 70 19-89 27-101 (112)
267 2inc_C TOUB protein; DIIRON, 4 29.3 2.9E+02 0.01 24.2 8.9 70 21-90 4-82 (83)
268 1wmh_B Partitioning defective- 28.9 2.3E+02 0.0079 24.9 8.2 73 16-90 4-84 (86)
269 2eke_C Ubiquitin-like protein 27.6 5.9 0.0002 35.7 -2.2 40 106-145 39-79 (106)
270 3hk0_A Growth factor receptor- 25.2 77 0.0026 32.5 5.2 58 19-76 9-73 (256)
271 3pvl_A Myosin VIIA isoform 1; 25.1 84 0.0029 36.2 6.1 40 17-56 262-301 (655)
272 3r8s_T 50S ribosomal protein L 25.1 1.2E+02 0.0042 26.7 5.8 40 28-67 27-67 (93)
273 3tca_A Amyloid beta A4 precurs 24.2 1.4E+02 0.0047 29.4 6.7 43 17-59 33-75 (291)
274 2ktr_A Sequestosome-1; autopha 23.1 1.4E+02 0.0048 27.5 6.0 52 39-90 57-115 (117)
275 2v1y_A Phosphatidylinositol-4, 22.3 1.3E+02 0.0046 27.3 5.6 75 15-90 16-104 (108)
276 1j0g_A Hypothetical protein 18 22.2 2.4E+02 0.0083 24.9 6.9 63 31-93 26-89 (92)
277 2kkc_A Sequestosome-1; P62, PB 22.2 2.2E+02 0.0074 25.6 6.9 53 39-91 42-101 (102)
278 3w1s_C Ubiquitin-like protein 21.3 3.9E+02 0.013 23.3 8.3 71 16-90 6-85 (91)
279 1pqs_A Cell division control p 20.8 67 0.0023 27.5 3.2 36 30-65 3-43 (77)
280 2beq_A E2 glycoprotein; viral 20.8 1.4E+02 0.0049 22.7 4.5 28 277-305 11-38 (38)
281 1wj6_A KIAA0049 protein, RSGI 20.4 4.8E+02 0.016 23.6 8.9 73 17-92 13-95 (101)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.86 E-value=6.9e-23 Score=195.27 Aligned_cols=126 Identities=30% Similarity=0.448 Sum_probs=113.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||+++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 44556779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 92 PVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 92 pggpsss~~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+ ++.+++ ..|+.+.+.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 94 ~g-----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 94 RG-----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CC-----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cc-----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 76 355554 678889999999999999999999 89999999999975
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.85 E-value=1.4e-22 Score=189.97 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=111.2
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE-e-CCeecCchhhhcccccCCCCEEEEeeec-CCC
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-F-kGKvLkDdkTLsdYGIqdGSTLhLVlRl-pgg 94 (730)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 389999999999999999999999999999999999999999999 9 7999999999999999999999999984 33
Q ss_pred CCCCCCCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 95 psss~~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+++ .+|+.+.+.|++++||..||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 466655 678899999999999999999999 89999999999874
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=5.1e-21 Score=175.90 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=110.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggpsss 98 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+++|++|+|++|++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 99 ~~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+++ ..|+.+.+.|.+++||..||.+|+ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 355554 578888899999999999999999 89999999999974
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=143.78 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=4.1e-18 Score=145.98 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
+.+|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||+++.++.+
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 899999999987654
Q ss_pred C
Q 004801 96 S 96 (730)
Q Consensus 96 s 96 (730)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=4.7e-18 Score=143.99 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+...+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004801 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 86 ~GG 88 (88)
T 3dbh_I 86 RGG 88 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.4e-18 Score=149.37 Aligned_cols=82 Identities=34% Similarity=0.487 Sum_probs=75.0
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...+..|+|+||+.+|++|.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004801 93 VP 94 (730)
Q Consensus 93 gg 94 (730)
++
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.3e-17 Score=143.90 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 004801 92 P 92 (730)
Q Consensus 92 p 92 (730)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.4e-17 Score=140.69 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=77.0
Q ss_pred CCCcEEEEEEecCC-cEEEE-EecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 15 SETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 15 s~~tMqItVKtLdG-KT~tL-eVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...+|+|+||+++| +++.| +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 44679999999999 79999 59999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004801 93 VPSS 96 (730)
Q Consensus 93 ggps 96 (730)
++++
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8654
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.72 E-value=1.1e-17 Score=144.15 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=73.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998864
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.72 E-value=1.2e-17 Score=148.44 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.5
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
....+|+|+||++.|+++.++|++++||.+||++|+++.|+|+++|||+|.||+|+|+.+|++|+|++|++|||+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999974
No 12
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=139.63 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=76.8
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
++.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999875
No 13
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=143.82 Aligned_cols=87 Identities=30% Similarity=0.428 Sum_probs=79.4
Q ss_pred CCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEe
Q 004801 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 9 ~~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
......+..+|+|+||+. |+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+
T Consensus 8 ~~~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 8 VSGREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp CCCSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred ccCCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEE
Confidence 333444668899999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 004801 89 VRQPVPSS 96 (730)
Q Consensus 89 lRlpggps 96 (730)
+++.+++.
T Consensus 87 ~~~~~g~~ 94 (96)
T 1wx8_A 87 VRSHSGPS 94 (96)
T ss_dssp BCCSSCSS
T ss_pred EeCCCCCC
Confidence 99887543
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=2.4e-17 Score=134.96 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=72.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998763
No 15
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.3e-17 Score=147.03 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=76.4
Q ss_pred CCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 10 ~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
.........|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||++
T Consensus 15 ~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 15 EPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp ------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred CCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 33445567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004801 90 RQPVPS 95 (730)
Q Consensus 90 Rlpggp 95 (730)
+.+...
T Consensus 95 ~~~~~~ 100 (106)
T 1ttn_A 95 SQPVQN 100 (106)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 887653
No 16
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.9e-17 Score=137.75 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999875
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=140.32 Aligned_cols=76 Identities=45% Similarity=0.673 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
..+..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 345679999999999999999999999999999999999999999999999999999999999999 8999999986
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=1.7e-17 Score=139.37 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=73.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
.+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998753
No 19
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.1e-17 Score=148.56 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=76.9
Q ss_pred CCCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEE
Q 004801 8 KIPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 8 e~~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
.+..++....+|+|+||++.|+++.|+|++++||.+||++|++++|+|+++|||+|.||+|+|+++|++|+|+++++|||
T Consensus 18 ~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 18 VPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp CCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEE
T ss_pred ccccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEE
Confidence 34556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 004801 88 VV 89 (730)
Q Consensus 88 Vl 89 (730)
+.
T Consensus 98 ~~ 99 (100)
T 1uh6_A 98 YY 99 (100)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=135.81 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=74.7
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.+..+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999998863
No 21
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=2.8e-17 Score=137.42 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=74.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
+.|+|+||+++|+++.++|++++||.+||++|+++.++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998763
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=140.90 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=72.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
+..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++
T Consensus 2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999998775
No 23
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.9e-17 Score=141.62 Aligned_cols=82 Identities=29% Similarity=0.383 Sum_probs=75.5
Q ss_pred CCCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHhh--CCCCCCeEEEeCCeecCchhhhccc--ccCCCCEEEEe
Q 004801 15 SETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtLdGK--T~tLeVdpsdTV~dLKekIeekt--GIPpeqQRLIFkGKvLkDdkTLsdY--GIqdGSTLhLV 88 (730)
+...|+|+||+.+++ ++.|+|++++||.+||++|++++ ++|+++|||+|+||.|+|+++|++| +|+++++|||+
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 346699999999988 67778889999999999999999 9999999999999999999999999 99999999999
Q ss_pred eecCCCCC
Q 004801 89 VRQPVPSS 96 (730)
Q Consensus 89 lRlpggps 96 (730)
+++.++++
T Consensus 84 ~~~~gg~~ 91 (93)
T 1wgd_A 84 CNVKSGPS 91 (93)
T ss_dssp CCCCCCCC
T ss_pred eCCCCCCC
Confidence 99887643
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=5.1e-17 Score=133.03 Aligned_cols=76 Identities=37% Similarity=0.546 Sum_probs=73.6
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998764
No 25
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.6e-17 Score=143.69 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+++|+++.|+|++++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++
T Consensus 15 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 15 DKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp ----CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 33455679999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004801 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 95 ~GG 97 (97)
T 1wyw_B 95 TGG 97 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 26
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.69 E-value=6e-17 Score=136.65 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHh---hCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeek---tGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...|+|+||+++|+++.++|++++||.+||++|+++ +++|+++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357999999999999999999999999999999998 89999999999999999999999999999999999999876
Q ss_pred C
Q 004801 93 V 93 (730)
Q Consensus 93 g 93 (730)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 27
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.69 E-value=5.2e-17 Score=140.39 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998764
No 28
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.2e-17 Score=134.78 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEecCCcEE-EEE-ecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 18 tMqItVKtLdGKT~-tLe-VdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.|+|+||+++|+++ .++ |++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 999 9999999999999999999999999999999999999999999999999999999863
No 29
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.8e-16 Score=140.98 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=77.1
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.+.+|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 467899999999886 7999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCC
Q 004801 95 SSSD 98 (730)
Q Consensus 95 psss 98 (730)
+..+
T Consensus 93 ~~~~ 96 (106)
T 1wx7_A 93 AMGN 96 (106)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 30
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.6e-17 Score=147.14 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
+|+|+||+++|++|.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999976543
No 31
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-16 Score=140.41 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=76.7
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCch-hhhcccccCCCCEEEEeeec
Q 004801 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlRl 91 (730)
-.....|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|+|++++
T Consensus 10 ~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 10 HAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred ccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 3456679999999877 899999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCC
Q 004801 92 PVPS 95 (730)
Q Consensus 92 pggp 95 (730)
++++
T Consensus 89 ~gg~ 92 (94)
T 2kan_A 89 INRA 92 (94)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 32
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=7.6e-17 Score=138.78 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCee-cCchhhhcccccCCCCEEEEeee
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKv-LkDdkTLsdYGIqdGSTLhLVlR 90 (730)
...|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=2e-16 Score=138.10 Aligned_cols=77 Identities=32% Similarity=0.559 Sum_probs=73.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHh---hCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeek---tGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999999876543
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=140.59 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.......|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 44456679999999 7999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004801 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 91 ~GG 93 (93)
T 2l7r_A 91 LGG 93 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=1.5e-16 Score=143.21 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998764
No 36
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.9e-17 Score=146.87 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=91.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggps 96 (730)
..++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCC-----CCCCCcccccccCCchhh
Q 004801 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (730)
Q Consensus 97 ss~~sI~v-----~tgrtitl~VspsdTIes 122 (730)
.+++ .+|++++++|+++++|..
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 3333 257788899999888764
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.3e-16 Score=137.40 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998875
No 38
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.8e-17 Score=140.72 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.1
Q ss_pred cEEEEEEecCCcEEEEEec--CCCCHHHHHHHH-HHhhCCCCCCeEEEeCCeecCchhhhccccc-CCCCEEEEeeec
Q 004801 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVd--psdTV~dLKekI-eektGIPpeqQRLIFkGKvLkDdkTLsdYGI-qdGSTLhLVlRl 91 (730)
+|+|+||+++|++|.|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4999999999999998766 999999999999 9999999999999999999999999999999 799999999875
No 39
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=139.49 Aligned_cols=82 Identities=29% Similarity=0.426 Sum_probs=76.3
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...+.+|+|+||+.+|+ +.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 34557799999999886 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004801 93 VPS 95 (730)
Q Consensus 93 ggp 95 (730)
+++
T Consensus 96 ~~p 98 (100)
T 1yqb_A 96 HRA 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 40
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.5e-16 Score=141.86 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.3
Q ss_pred CCCcEEEEEEecCCcEEEE--EecCCCCHHHHHHHH-HHhhCCCCCCeEEEeCCeecCchhhhccccc-CCCCEEEEeee
Q 004801 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tL--eVdpsdTV~dLKekI-eektGIPpeqQRLIFkGKvLkDdkTLsdYGI-qdGSTLhLVlR 90 (730)
....|+|+||+++|++|.+ +|++++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 4567999999999998777 566999999999999 8888999999999999999999999999999 99999999998
Q ss_pred cC
Q 004801 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 41
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.7e-16 Score=139.29 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCch-hhhcccccCCCCEEEEeee
Q 004801 16 ETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtLdG----KT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlR 90 (730)
...|+|+||+..+ ++|.++|++++||.+||++|++++++|+++|||+|+||.|+|+ ++|++|+|++|++|||+++
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 3569999999754 7999999999999999999999999999999999999999988 7999999999999999999
Q ss_pred cCCCCCCC
Q 004801 91 QPVPSSSD 98 (730)
Q Consensus 91 lpggpsss 98 (730)
..+++..+
T Consensus 85 ~~gg~~~~ 92 (102)
T 1v5o_A 85 DNVGLRTP 92 (102)
T ss_dssp CCCCCSSC
T ss_pred CCCCCCCC
Confidence 88775543
No 42
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=4.1e-16 Score=135.47 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCch-hhhcccccCCCCEEEEeeecC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDd-kTLsdYGIqdGSTLhLVlRlp 92 (730)
+++..|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.+
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 456779999999999999999999999999999999988 8999999999999999 999999999999999999987
Q ss_pred CCCC
Q 004801 93 VPSS 96 (730)
Q Consensus 93 ggps 96 (730)
....
T Consensus 80 ~~~~ 83 (95)
T 1wia_A 80 GAAV 83 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 43
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.64 E-value=6.1e-16 Score=127.71 Aligned_cols=73 Identities=38% Similarity=0.690 Sum_probs=70.1
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 49999999 99999999999999999999999999999999999999999999999999999999999998754
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=5.2e-16 Score=135.53 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998864
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=136.97 Aligned_cols=79 Identities=28% Similarity=0.409 Sum_probs=74.2
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
....|+|+||+. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++++..
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 456799999998 8999999999999999999999999999999999999999999999999999999999999987653
No 46
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.44 E-value=1.6e-17 Score=137.45 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999765
No 47
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.5e-16 Score=142.54 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=72.0
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
..+|+|+||+. ++++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||++++.++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999998 99999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 004801 96 SS 97 (730)
Q Consensus 96 ss 97 (730)
.+
T Consensus 109 ~~ 110 (125)
T 1j8c_A 109 SS 110 (125)
T ss_dssp --
T ss_pred CC
Confidence 44
No 48
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=3.4e-16 Score=141.50 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCC---------------CCeEEEeCCeecC-chhhhcccc
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYH 78 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPp---------------eqQRLIFkGKvLk-DdkTLsdYG 78 (730)
....|+|+||+++|++|.|+|++++||.+||++|++++++|+ ++|+|+|+||.|+ |+++|++|+
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 345699999999999999999999999999999999999887 4679999999996 669999999
Q ss_pred cCCCCEEEEeeecCCC
Q 004801 79 VEDGHTLHMVVRQPVP 94 (730)
Q Consensus 79 IqdGSTLhLVlRlpgg 94 (730)
|++|++|||++++.+.
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999998764
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=137.02 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998763
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.5e-15 Score=139.60 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH------hhCC--CCCCeEEEeCCeecCchhhhcccccCCC
Q 004801 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (730)
Q Consensus 11 ~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIee------ktGI--PpeqQRLIFkGKvLkDdkTLsdYGIqdG 82 (730)
....+...|+|+||++.|+++.|+|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|+.+
T Consensus 9 ~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 9 SSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFG 88 (116)
T ss_dssp CCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSS
T ss_pred cCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 4445667899999999999999999999999999999999 5675 6999999999999999999999999766
Q ss_pred --CEEEEeeecCCC
Q 004801 83 --HTLHMVVRQPVP 94 (730)
Q Consensus 83 --STLhLVlRlpgg 94 (730)
.+|||+++....
T Consensus 89 ~~~tlhLvlr~~~~ 102 (116)
T 1wgh_A 89 KTTVMHLVARETLP 102 (116)
T ss_dssp CEEEEEEEECSSCS
T ss_pred CceEEEEEccCCCC
Confidence 689999987653
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.1e-15 Score=143.34 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|+.++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999875
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.60 E-value=1.8e-15 Score=145.85 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=73.9
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 53
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.9e-15 Score=132.57 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=74.1
Q ss_pred CCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEe
Q 004801 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 9 ~~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.......+++|+|+||+ .+++|.|+|++++||.+||++|+++++||+++|||+|+||.| |+.+|++|+|+++++|||+
T Consensus 8 ~~~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 8 DAGGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVV 85 (95)
T ss_dssp CCCCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEEC
T ss_pred CCCCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEE
Confidence 34455667789999996 689999999999999999999999999999999999999999 4559999999999999999
Q ss_pred eecCC
Q 004801 89 VRQPV 93 (730)
Q Consensus 89 lRlpg 93 (730)
.+...
T Consensus 86 ~~~~~ 90 (95)
T 1v86_A 86 GSTIS 90 (95)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 87644
No 54
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=3.1e-15 Score=129.23 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=71.6
Q ss_pred CCCcEEEEEEecCCcEEEEEecCC-----CCHHHHHHHHHHhhCCCCCCeEEEeCCeecCc-hhhhcccccCCCCEEEEe
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdps-----dTV~dLKekIeektGIPpeqQRLIFkGKvLkD-dkTLsdYGIqdGSTLhLV 88 (730)
.+.+|+|+||+ .++++.|+|+++ +||.+||++|++++++|+++|||+|+||.|+| +++|++|+|++|++|||+
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 44679999999 589999999995 99999999999999999999999999999998 568999999999999999
Q ss_pred eecCC
Q 004801 89 VRQPV 93 (730)
Q Consensus 89 lRlpg 93 (730)
.+...
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 87654
No 55
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=1.4e-15 Score=136.39 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCcEEEEEEec---CCcEEEEEecC-CCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 16 ETTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~~tMqItVKtL---dGKT~tLeVdp-sdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
...|+|+|+++ +|+++.++|++ ++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35699999999 89999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 004801 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 56
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.2e-15 Score=134.69 Aligned_cols=81 Identities=27% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCCcEEEEEEecCC---cEEEEEec--------C-CCCHHHHHHHHHHhh--CCCCCC-eEEEeCCeecCchhhhcccc
Q 004801 14 SSETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYH 78 (730)
Q Consensus 14 ~s~~tMqItVKtLdG---KT~tLeVd--------p-sdTV~dLKekIeekt--GIPpeq-QRLIFkGKvLkDdkTLsdYG 78 (730)
.....|+|+||+.++ ++|.|+|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|++|+
T Consensus 8 ~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 8 MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred ccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 345569999999998 89999954 4 499999999999999 999999 99999999999999999999
Q ss_pred cCCCCEEEEeeecCCC
Q 004801 79 VEDGHTLHMVVRQPVP 94 (730)
Q Consensus 79 IqdGSTLhLVlRlpgg 94 (730)
|++|++|||+++.+..
T Consensus 88 i~~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 88 IQPGSTVHVLRKSWSG 103 (107)
T ss_dssp CCTTCEEEEEESSCCS
T ss_pred CCCCCEEEEEeCCCCC
Confidence 9999999999987653
No 57
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.3e-15 Score=135.31 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=67.4
Q ss_pred EEEEEEecC----CcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 19 IEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtLd----GKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|.|+..+ ++++.|+|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|+|++|++| |++++++.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 456666666 7899999999999999999999999999999999999999999999999999999999 66666554
No 58
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.59 E-value=2.5e-15 Score=130.34 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=72.1
Q ss_pred CCCcEEEEEEecCCcEEEE-EecCCCCHHHHHHHHHHhhCCCCCCeEEE---eCCeecCchhhhcccccCCCCEEEEeee
Q 004801 15 SETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tL-eVdpsdTV~dLKekIeektGIPpeqQRLI---FkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.+.+|+|+||+ .|++|.| +|++++||.+||++|++++++|+++|||+ |+||.|+|+++|++|+|++|++|||+..
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 45679999998 7899999 99999999999999999999999999999 9999999999999999999999999976
Q ss_pred cC
Q 004801 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 59
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=4.5e-15 Score=130.80 Aligned_cols=77 Identities=22% Similarity=0.398 Sum_probs=71.5
Q ss_pred CCCCcEEEEEEecCCcEE-EEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 14 SSETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~-tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
..+.+|+|+||+ .|++| .|+|++++||.+||++|++++|||+++|||+|+||.|+|+ +|++|+|++|++|||+....
T Consensus 3 ~~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 3 SGSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp SCCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 345679999997 68999 6999999999999999999999999999999999999999 99999999999999998754
No 60
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=138.12 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH------hhCCC--CCCeEEEeCCeecCchhhhcccccCCCC--
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH-- 83 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIee------ktGIP--peqQRLIFkGKvLkDdkTLsdYGIqdGS-- 83 (730)
.....|.|+||+++|+++.|+|++++||.+||++|++ ++++| +++|||||.||+|+|+++|++|+|++++
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 92 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3455699999999999999999999999999999999 67874 8999999999999999999999999776
Q ss_pred EEEEeeecCCC
Q 004801 84 TLHMVVRQPVP 94 (730)
Q Consensus 84 TLhLVlRlpgg 94 (730)
+|||++++..+
T Consensus 93 tlhlv~r~~~~ 103 (125)
T 2gow_A 93 VMHLVARETLP 103 (125)
T ss_dssp EEEEEECSCCS
T ss_pred EEEEEecCCCC
Confidence 78999998753
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.57 E-value=2.8e-15 Score=138.39 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=64.8
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccC-------CCCEEEEeee
Q 004801 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtLdGK-T~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIq-------dGSTLhLVlR 90 (730)
|+++|+...++ ++.|+|++++||.+||++|+.++|||+++|||+|+||.|+|+++|++|+|+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34444444454 699999999999999999999999999999999999999999999999999 7999999999
No 62
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=6.7e-15 Score=137.20 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=73.4
Q ss_pred CCCCcEEEEEEecCCcEE-EEEecCCCCHHHHHHHHH-----HhhCCCC--CCeEEEeCCeecCchhhhcccccCCC---
Q 004801 14 SSETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIA-----SVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG--- 82 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~-tLeVdpsdTV~dLKekIe-----ektGIPp--eqQRLIFkGKvLkDdkTLsdYGIqdG--- 82 (730)
..++.|+|+||+++|+.+ .+++++++||.+||++|+ ++.++|+ ++|||||.||+|+|+++|++|+|+++
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 445789999999999988 699999999999999994 5667887 89999999999999999999999998
Q ss_pred ---CEEEEeeecCCC
Q 004801 83 ---HTLHMVVRQPVP 94 (730)
Q Consensus 83 ---STLhLVlRlpgg 94 (730)
.+|||++++.++
T Consensus 92 ~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 92 GAVTTMHVIIQAPVT 106 (126)
T ss_dssp TCCEEEEEEECCCSS
T ss_pred CCcEEEEEEeccCCc
Confidence 789999998864
No 63
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=133.63 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=65.9
Q ss_pred CCCCcEEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHh-hCCC-CCCeEEEeCCeecCchhhhccc--ccCCCCEEEE
Q 004801 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (730)
Q Consensus 14 ~s~~tMqItVKtLdGK--T~tLeVdpsdTV~dLKekIeek-tGIP-peqQRLIFkGKvLkDdkTLsdY--GIqdGSTLhL 87 (730)
.....|+|+||+++++ ++.|+|++++||.+||++|+++ .|+| +++|||+|+||+|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456799999999998 6789999999999999999986 4666 5999999999999999999999 9999999998
Q ss_pred e
Q 004801 88 V 88 (730)
Q Consensus 88 V 88 (730)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.56 E-value=5.5e-15 Score=145.77 Aligned_cols=79 Identities=35% Similarity=0.489 Sum_probs=75.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
.-.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||++++.++
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999999875
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-15 Score=134.90 Aligned_cols=75 Identities=37% Similarity=0.669 Sum_probs=69.5
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
...|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 3568899998 89999999999999999999999999999999999999999999999999999999999999864
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.55 E-value=5.2e-15 Score=136.63 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=67.2
Q ss_pred EEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCC-------CCEEEEeee
Q 004801 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtLdGK-T~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqd-------GSTLhLVlR 90 (730)
|.|+|+...+| ++.++|++++||.+||++|++++|+|+++|||+|.||+|+|++||++|+|++ +++|||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 55666655555 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred c
Q 004801 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=6e-15 Score=140.51 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=71.1
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|++++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.3e-14 Score=130.99 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.5
Q ss_pred CcEEEEEEec----------CCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEE
Q 004801 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtL----------dGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLh 86 (730)
..|+|+|+.. +|+++.|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688999886 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 004801 87 MVVRQPVP 94 (730)
Q Consensus 87 LVlRlpgg 94 (730)
|++++.++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999875
No 69
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.9e-14 Score=130.11 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEEE-ecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 12 AESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 12 s~~s~~tMqItVK-tLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.+..+..|.|+|+ ...++.|+++++++.||.+||++|++++++|+++|||+|+||.|+|+.||.+|||++|.||||+++
T Consensus 9 ~~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 9 ESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp CCCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred hcccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 4456677899988 657889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 004801 91 QPV 93 (730)
Q Consensus 91 lpg 93 (730)
...
T Consensus 89 s~~ 91 (118)
T 2daf_A 89 STN 91 (118)
T ss_dssp ESC
T ss_pred cCC
Confidence 754
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=1.5e-14 Score=132.84 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=74.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
..|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 348999999999999999999999999999999999999999999999999999999999999999999999998764
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.54 E-value=5e-16 Score=142.87 Aligned_cols=77 Identities=36% Similarity=0.538 Sum_probs=0.4
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998763
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.52 E-value=2.7e-14 Score=129.45 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhccccc-CCCCEEEEe
Q 004801 12 AESSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMV 88 (730)
Q Consensus 12 s~~s~~tMqItVKtLdG--KT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGI-qdGSTLhLV 88 (730)
....+-.|+|+|+...+ .+++|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|.+||| ++|++|||+
T Consensus 18 ~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp --CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred CCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 33445569999999875 789999999999999999999999999999999999999999999999999 599999999
Q ss_pred eec
Q 004801 89 VRQ 91 (730)
Q Consensus 89 lRl 91 (730)
+-.
T Consensus 98 l~~ 100 (105)
T 4dbg_A 98 LLS 100 (105)
T ss_dssp ECC
T ss_pred EEe
Confidence 864
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=3.5e-14 Score=122.11 Aligned_cols=74 Identities=31% Similarity=0.503 Sum_probs=67.6
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
..++.+.++ .+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+..
T Consensus 10 ~~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 10 HSTIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CCcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 345666554 48999999999999999999999999999999999999999999999999999999999999874
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.48 E-value=3.1e-15 Score=142.83 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggp 95 (730)
|+|+|++++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998874
No 75
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.47 E-value=3.2e-14 Score=152.57 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=71.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHH---hhCCCCCCeEEEeCCeecCchhhhcccccCCCCEE-EEeeec
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVRQ 91 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIee---ktGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTL-hLVlRl 91 (730)
+.+|+|+||+++|++|.|+|++++||.+||++|++ +++|++++|||+|+||+|+|+++|++|+|++|++| ||++|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 45799999999999999999999999999999999 67799999999999999999999999999999999 666665
Q ss_pred CCC
Q 004801 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
+++
T Consensus 85 ~~~ 87 (368)
T 1oqy_A 85 KAG 87 (368)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=123.62 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=67.8
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEe--CCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF--kGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.|.++++...|++|.|+|++++||.+||++|++++|||+++|||+| .|+ |+|+++|++|+|++|++|||++..-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 4777777778999999999999999999999999999999999996 455 99999999999999999999987544
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3.4e-13 Score=119.33 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC--Ce---ec-CchhhhcccccCCCCE
Q 004801 13 ESSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHT 84 (730)
Q Consensus 13 ~~s~~tMqItVKtLdG--KT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFk--GK---vL-kDdkTLsdYGIqdGST 84 (730)
-.++..|.|+|++..+ +.++++|++++||.+||++|+.++|||+++|||+|. |+ .| +|+++|++|+|++|++
T Consensus 10 ~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred cCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCE
Confidence 3457789999998765 489999999999999999999999999999999998 55 44 8999999999999999
Q ss_pred EEEe
Q 004801 85 LHMV 88 (730)
Q Consensus 85 LhLV 88 (730)
|||+
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 78
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.43 E-value=1.2e-13 Score=120.19 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.5
Q ss_pred cEEEEEEe--cCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEe-------CCeecCchhhhcccccCCCCEEEEe
Q 004801 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 18 tMqItVKt--LdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF-------kGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.++|.|.. .+.+.+++++++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 35566553 45677899999999999999999999999999999997 4789999999999999999999999
Q ss_pred eecC
Q 004801 89 VRQP 92 (730)
Q Consensus 89 lRlp 92 (730)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7643
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=119.81 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCCcEE--EE-EecCCCCHHHHHHHHHHh-hCCCCCCeEEEeC--CeecCchhhhcccccCCCCEEEE
Q 004801 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIASV-TGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~--tL-eVdpsdTV~dLKekIeek-tGIPpeqQRLIFk--GKvLkDdkTLsdYGIqdGSTLhL 87 (730)
-.+|+|+||++.|+++ .| +|++++||.+||++|+++ .++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4469999999988775 58 999999999999999994 8999999999976 99999999999999999999876
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=1.7e-13 Score=143.97 Aligned_cols=81 Identities=36% Similarity=0.541 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+......|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+
T Consensus 227 A~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 227 AAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred ccCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 004801 92 P 92 (730)
Q Consensus 92 p 92 (730)
+
T Consensus 307 r 307 (307)
T 3ai5_A 307 R 307 (307)
T ss_dssp -
T ss_pred C
Confidence 3
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=5.3e-13 Score=119.56 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=68.5
Q ss_pred CcEEEEEEecCCcEEEEEec-CCCCHHHHHHHHHHhhCCCCCCeEEEeCCe-----------e----cCchhhhcccccC
Q 004801 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVd-psdTV~dLKekIeektGIPpeqQRLIFkGK-----------v----LkDdkTLsdYGIq 80 (730)
+.|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|+|+|.|+ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred CCCEEEEeeecC
Q 004801 81 DGHTLHMVVRQP 92 (730)
Q Consensus 81 dGSTLhLVlRlp 92 (730)
+|++|||+....
T Consensus 85 ~G~~L~l~~~~~ 96 (107)
T 1wf9_A 85 HGSMVYLAYEGE 96 (107)
T ss_dssp TTCEEECCCSSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998743
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.2e-12 Score=116.37 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCcEEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCe---e----cCchhhhcccccCCCCEE
Q 004801 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 15 s~~tMqItVKtLdG--KT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGK---v----LkDdkTLsdYGIqdGSTL 85 (730)
.+..+.|+|++... +.++++|++++||.+||++|+.++|||+++|||+|.|+ . ++|+++|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45668888887544 47999999999999999999999999999999999984 3 488999999999999999
Q ss_pred EEeee
Q 004801 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
||+-.
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99853
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.6e-12 Score=113.80 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=66.9
Q ss_pred CCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCC---ee----cCchhhhcccccCCCCEEEE
Q 004801 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~~tMqItVKtLdGK-T~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkG---Kv----LkDdkTLsdYGIqdGSTLhL 87 (730)
...|.|+|++.... .++++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|.+|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 44589999986543 689999999999999999999999999999999987 43 58999999999999999999
Q ss_pred eeec
Q 004801 88 VVRQ 91 (730)
Q Consensus 88 VlRl 91 (730)
+-.-
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.3e-12 Score=115.51 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=75.7
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.....|+|+||+.+|+.+.++|.+++++..||++++++.+++++++||+|.|+.|++++|+++|++++|++|+|++++.+
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 004801 94 P 94 (730)
Q Consensus 94 g 94 (730)
+
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 6
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=3e-12 Score=117.24 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCC---ee----cCchhhhcccccCCCCEEEE
Q 004801 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~~tMqItVKtLdGK-T~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkG---Kv----LkDdkTLsdYGIqdGSTLhL 87 (730)
...|.|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. ++|+++|.+|+|++|++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 34699999986543 688999999999999999999999999999999987 42 48999999999999999999
Q ss_pred eeecC
Q 004801 88 VVRQP 92 (730)
Q Consensus 88 VlRlp 92 (730)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 97543
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.33 E-value=1.1e-13 Score=136.87 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=0.8
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpggps 96 (730)
|+|+||+++|+++.|+|++++||.+||++|++++|||+++|||+|.|++|+|+.+|+ +++||||++++.++..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 899999999999999999999999999999999999999999999999999999998 8999999999987643
No 87
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=2.5e-11 Score=109.37 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.....|.|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|++++|++|+|++++.+
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004801 94 PS 95 (730)
Q Consensus 94 gp 95 (730)
+.
T Consensus 100 G~ 101 (104)
T 1wz0_A 100 GP 101 (104)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.9e-11 Score=107.64 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=75.4
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
...|+|+|++.+|+.+.+.|.+++++..||++++++.|+++..+||+|+|+.|.+++|+++|++++|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999998875
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.25 E-value=1.7e-11 Score=107.84 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
.....|.|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+.+|++++|++|++++++.+
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998765
No 90
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.22 E-value=9.7e-12 Score=131.04 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=68.9
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE---eCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI---FkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
.++|+|+||+ .|++|.|+|++++||.+||++|++++|||+++|||+ |+||.|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 4669999998 799999999999999999999999999999999999 899999999999999999999999996543
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.21 E-value=1.2e-11 Score=106.29 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=64.7
Q ss_pred EEEEEEecCCcEEEEE-ecCCCCHHHHHHHHHHhhCCCCCCeEEEeC--CeecC---chhhhcccccCCCCEEEEeeec
Q 004801 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtLdGKT~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIFk--GKvLk---DdkTLsdYGIqdGSTLhLVlRl 91 (730)
|+|+||+.+|+.. ++ |++++||.+||++|++++++++++|||+|. +|.|+ |+++|++|||.+|++|||....
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 7899999999654 77 999999999999999999999999999987 48874 6899999999999999998664
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.21 E-value=4.5e-11 Score=108.95 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+.....|.|+|++.+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+++|++++|++|+|++.+
T Consensus 20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004801 92 PVP 94 (730)
Q Consensus 92 pgg 94 (730)
.++
T Consensus 100 ~Gg 102 (110)
T 2k8h_A 100 TGG 102 (110)
T ss_dssp CCC
T ss_pred cCc
Confidence 764
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.20 E-value=6e-11 Score=107.51 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 11 ~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
........|.|+|++ +|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|.++|++++|++|+++++
T Consensus 24 ~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 24 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 344456779999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 004801 91 QPV 93 (730)
Q Consensus 91 lpg 93 (730)
+.+
T Consensus 103 q~G 105 (106)
T 2eke_C 103 QIG 105 (106)
T ss_dssp C--
T ss_pred ccc
Confidence 765
No 94
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.19 E-value=6.2e-11 Score=99.20 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=69.3
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
.|+|+|++.+|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|.++|++++|++|++++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999974
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.17 E-value=1.2e-10 Score=99.39 Aligned_cols=74 Identities=11% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEe
Q 004801 15 SETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 15 s~~tMqItVKtLdGK-T~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
....|.|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 446699999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=6.9e-10 Score=97.21 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=66.9
Q ss_pred CCCcEEEEEEe---cCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCC------ee-c-CchhhhcccccCCCC
Q 004801 15 SETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KV-L-KDDQLLSAYHVEDGH 83 (730)
Q Consensus 15 s~~tMqItVKt---LdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkG------Kv-L-kDdkTLsdYGIqdGS 83 (730)
....+.|+|++ .+++.+.+.+.+++||.+||.+|+..+|+|+..|||+|.+ .. | +|.++|.+|+|.+|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 45568898886 4678999999999999999999999999999999999873 22 4 677999999999999
Q ss_pred EEEEeeec
Q 004801 84 TLHMVVRQ 91 (730)
Q Consensus 84 TLhLVlRl 91 (730)
+|||....
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998754
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.78 E-value=2.5e-08 Score=91.79 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
...|.|+|+..+|+.+.+.|.+++++..|++.++++.|+++..+||+|.|+.|.++.|.++|++++|++|++++.+-
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998753
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=8e-08 Score=95.84 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecC
Q 004801 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlp 92 (730)
......|+|+|+. +|+.+.+.|.+++++..||+.++++.|+++.++||+|.|+.|.++.|.++|++++|++|++++.+.
T Consensus 24 ~~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 24 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp -CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCS
T ss_pred CCCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 3456779999985 899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004801 93 VPS 95 (730)
Q Consensus 93 ggp 95 (730)
++.
T Consensus 103 gg~ 105 (200)
T 3pge_A 103 GGG 105 (200)
T ss_dssp CCC
T ss_pred cCc
Confidence 764
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.2e-08 Score=97.00 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
+....|.|+|+. +|+.+.+.|.+++++..||+.++++.|+++..+||+|+|+.|.+++|.++|+++||++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 456779999985 8999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 004801 94 P 94 (730)
Q Consensus 94 g 94 (730)
+
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.37 E-value=4.8e-08 Score=98.34 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=0.6
Q ss_pred CCCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEe
Q 004801 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 9 ~~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.+....+...|.|+| ..+|+.+.++|.+++++..||+.++++.|++++.+|++|+|+.|.+++|.++++++||++|+++
T Consensus 12 ~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 12 VKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEE
Confidence 344555667899999 7789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 004801 89 VRQPVP 94 (730)
Q Consensus 89 lRlpgg 94 (730)
+.+.++
T Consensus 91 leQ~GG 96 (227)
T 3v7o_A 91 REQIGG 96 (227)
T ss_dssp -----C
T ss_pred ecccCC
Confidence 999886
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.22 E-value=5.8e-07 Score=77.20 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=59.8
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCee---c--CchhhhcccccCCCCEEEEe
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKv---L--kDdkTLsdYGIqdGSTLhLV 88 (730)
+.|.|.||+.+| ++.|+|++++||.+||++|+++++++.+.|.|.+.-.. | .++.+|+++||+.|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999876 77788999999999999999999999988877665433 3 47789999999999999874
No 102
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.16 E-value=8.1e-06 Score=73.03 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=70.2
Q ss_pred CCCCCcEEEEEEecCCc-EEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEe
Q 004801 13 ESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGK-T~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLV 88 (730)
.+....|.|+|+..+++ .+.+.|.+++++..|.+..+++.++++...||+|.|+.|.++.|..++++++|++|.++
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34557799999998885 88999999999999999999999999999999999999999999999999999999875
No 103
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.04 E-value=1.1e-05 Score=80.13 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=75.5
Q ss_pred CCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 10 ~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+....+.+.|.|+|+. +++.+.++|..++++..||+..+++.|++++++||+|.|+.+.++++..++.++++++|.++.
T Consensus 13 ~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 13 KPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp -----CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred cceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 3444566789999998 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004801 90 RQPVPS 95 (730)
Q Consensus 90 Rlpggp 95 (730)
++.++.
T Consensus 92 eq~Gg~ 97 (209)
T 3uf8_A 92 EQIGGS 97 (209)
T ss_dssp SCTTCC
T ss_pred cccccc
Confidence 988754
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.03 E-value=2.1e-05 Score=68.36 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCC-CeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
..|.+.++..+...+.+.|.++.+|.+|-+..+.+.+|+++ ..||.|.|..|+.+.++.+|+++||+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45788888888888999999999999999999999999999 99999999999999999999999999999986
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.89 E-value=1.6e-06 Score=93.14 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 10 ~~s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+....+...|.|+|+. +|+.+.+.|..++++..||+.++++.|++++.+|++|+|+.|.++.|.+++++++|++|++++
T Consensus 13 ~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 13 KPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 4444566789999998 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 004801 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
++.++
T Consensus 92 ~Q~g~ 96 (360)
T 3ix6_A 92 EQIGG 96 (360)
T ss_dssp -----
T ss_pred ccCch
Confidence 98774
No 106
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.81 E-value=0.00013 Score=65.26 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
..+....|.|+|+. +|....+.|..++....|.+..+++.|+.+...|++|+|..+.++.|-.+++++++++|.+++-.
T Consensus 15 ~~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 15 LPETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CCSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 34455669999996 78999999999999999999999999999999999999999999999999999999999998753
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.76 E-value=3.6e-06 Score=89.88 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
....|.|+|+. +++.+.+.|..++++..||+..+++.|++..++|++|+|+.|.+++|.+++++++|++|++++.+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 55678888887 78888899999999999999999999999999999999999999999999999999999999998775
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.67 E-value=0.00012 Score=65.40 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=51.6
Q ss_pred EEEEec-CCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeec--Cchhhhccccc-CCCCEEEEee
Q 004801 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHV-EDGHTLHMVV 89 (730)
Q Consensus 21 ItVKtL-dGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvL--kDdkTLsdYGI-qdGSTLhLVl 89 (730)
|+|=.+ .++.+.+.|.+++||..||++|++++|||+++|+|+|.||.| +.++.-..|-- ....-|.|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 444333 467889999999999999999999999999999999999865 44455555533 2334455543
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.31 E-value=0.00044 Score=60.16 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=60.1
Q ss_pred cEEEEEEe--cCCcEEEEEecCCCCHHHHHHHHHHhhCCCC-----CCeEEEeCCeecCchhhhcccccCCCCEEEE
Q 004801 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKt--LdGKT~tLeVdpsdTV~dLKekIeektGIPp-----eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
-|.|+|.. -.++.|.|++....||+.|++.+.+.+++.. ...|+.-++..|.+++.|++|+|.+|+.|.+
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 46777765 3689999999999999999999999998665 2357778899999999999999999999875
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.28 E-value=0.00032 Score=65.76 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=59.3
Q ss_pred EEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCC-------------------------------------CeEEE
Q 004801 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (730)
Q Consensus 20 qItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpe-------------------------------------qQRLI 62 (730)
.|+|+.++|+..++.|+.+.+|.+++..|+.+.||+.. +++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 34443
Q ss_pred eC--CeecCchhhhcccccCCCCEEEEeee
Q 004801 63 CR--GKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 63 Fk--GKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
.. ...|+++++|.++||.++++|.|-.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 31 25678899999999999999766443
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.09 E-value=0.001 Score=59.03 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=70.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
-|.|+|-..+++...+.|.+++++.++-++.++++|+.+++-.|.|++|.|+-+..+.-.||.+|++|.|+.....
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999976543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.97 E-value=0.0033 Score=53.77 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE--eCCeecC---chhhhcccccCCCCEEEEee
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--FkGKvLk---DdkTLsdYGIqdGSTLhLVl 89 (730)
++...+|.||..+|+.+.-.+..++||.+|+.-|.. .+.+....+|+ |-.|.|. .+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 456789999999999999999999999999999988 56777888888 5578883 46899999999999888754
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.70 E-value=0.014 Score=52.62 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE--eCCeecC--c-hhhhcccccCCCCEEEEee
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--D-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--FkGKvLk--D-dkTLsdYGIqdGSTLhLVl 89 (730)
.....+|.||..+|+.+.-.+..++||.+|++-|....+.+.....|+ |--|.|. | +++|+++|+.+..+|++..
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 345689999999999999999999999999999999887777777887 5577785 3 6899999999988887776
Q ss_pred ecC
Q 004801 90 RQP 92 (730)
Q Consensus 90 Rlp 92 (730)
...
T Consensus 90 ~~~ 92 (109)
T 2dzk_A 90 AGR 92 (109)
T ss_dssp CSS
T ss_pred CcC
Confidence 543
No 114
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.69 E-value=3.4e-05 Score=68.81 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=37.5
Q ss_pred CCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++++ .+|+.+.+.|.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 23 qI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 23 EVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 4444 678999999999999999999999 99999999999873
No 115
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.53 E-value=0.00023 Score=64.01 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=33.7
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.++|++++||..||.+|+ ++|+|+++|||||+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 5678899999999999999999 99999999999977
No 116
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.46 E-value=0.00046 Score=68.42 Aligned_cols=42 Identities=5% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 101 sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+|++ +++++++++|++++||.+||.+|+ .+|||+++|||||+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp ---------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 4444 568889999999999999999999 99999999999985
No 117
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.45 E-value=6e-05 Score=63.88 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=38.0
Q ss_pred cCCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 79 IqdGSTLhLVlRlpggpsss~~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.++++++++++.+. .+.+++ ..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 2 ~~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 2 MEPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp -------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 345566666665432 344544 567888899999999999999999 89999999999873
No 118
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.24 E-value=0.00014 Score=65.34 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=35.6
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.++|.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 567889999999999999999999 99999999999977
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.22 E-value=0.014 Score=54.02 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE--eCCeec--Cc-hhhhcccccCCCCEEEEee
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--KD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--FkGKvL--kD-dkTLsdYGIqdGSTLhLVl 89 (730)
.....+|.||..+|+.+.-.+..++||.+|..-|... +.+.....|+ |-.|.| .| +++|.+++|.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3466899999999999999999999999999999887 7777788887 567888 33 6899999999988887764
Q ss_pred e
Q 004801 90 R 90 (730)
Q Consensus 90 R 90 (730)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.00035 Score=61.85 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=36.2
Q ss_pred hhhhcccccCCCCEEEEeeecCCCCCCCCCCCCC-CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 71 dkTLsdYGIqdGSTLhLVlRlpggpsss~~sI~v-~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
...+++|.|. +|.+|.++..- .+.+++ ..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCCC--cceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 3568889884 66666554221 122333 367788899999999999999999 89999999999974
No 121
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.00037 Score=60.68 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=33.5
Q ss_pred CCCCCcccccc--cCCchhhccccc-c-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~Vs--psdTIesVK~~I-q-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|+ +++||..||.+| + .+|+|+++|||||+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 56777778766 999999999999 7 89999999999985
No 122
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.61 E-value=0.058 Score=48.45 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=61.7
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE--eCCeecC--chhhhcccccCCCCEEEEeee
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--FkGKvLk--DdkTLsdYGIqdGSTLhLVlR 90 (730)
....+|.||..+|+.+.-.+..++||.+|..-|..+ +..+...+|+ |-.|.|. .+++|+++||.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 457999999999999999999999999999999965 5556777886 5578885 468999999999888877554
No 123
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.45 E-value=0.037 Score=51.18 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhh-CCCCCCeEEE--eCCeecCc-hhhhcccccCCCCEEE
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTLH 86 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeekt-GIPpeqQRLI--FkGKvLkD-dkTLsdYGIqdGSTLh 86 (730)
.....+|.||..+|+.+.-.+..++||.+|++-|.... +.......|+ |-.|.|+| +++|.++|+.+..+|.
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 44568999999999999999999999999999998864 3455667777 55788865 5899999999855443
No 124
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.043 Score=48.55 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC---CeecCchhhhcccccCC
Q 004801 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVED 81 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFk---GKvLkDdkTLsdYGIqd 81 (730)
..++.++++.|....-+++.++|+|..++.+|--.|++|+.+.++.-.|.-. +..|+-+++|.||||++
T Consensus 5 ~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 5 SSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3567899999999988999999999999999999999999999999988754 46789999999999987
No 125
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.26 E-value=0.0031 Score=51.51 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 456777889999999999999999 89999999999985
No 126
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.11 E-value=0.00054 Score=56.73 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|+
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 457778899999999999999999 89999999999874
No 127
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=95.01 E-value=0.0028 Score=54.88 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.9
Q ss_pred CCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.....+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 334577899999999999999 99999999999963
No 128
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.95 E-value=0.0017 Score=57.24 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=32.4
Q ss_pred CCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 457789999999999999999 99999999999985
No 129
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=94.79 E-value=0.00071 Score=57.46 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+++.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 456778899999999999999999 89999999999985
No 130
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=94.78 E-value=0.001 Score=61.66 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=31.6
Q ss_pred CcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.++|++++||..||.+|+ ++|||+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 56789999999999999999 99999999999974
No 131
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.77 E-value=0.00071 Score=57.90 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.++|++++||+.||.+|+ .+|+|+++|||+|+
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 89999999999975
No 132
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.76 E-value=0.001 Score=61.49 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=31.7
Q ss_pred CcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.++|++++||..||.+|+ ++|||+++|||||+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 47789999999999999999 99999999999965
No 133
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.73 E-value=0.0021 Score=57.06 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 456789999999999999999 99999999999984
No 134
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.71 E-value=0.059 Score=56.88 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=77.5
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhC----CCCCCeEEEe------CCeecCchhhhcccccCCCCEEEE
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektG----IPpeqQRLIF------kGKvLkDdkTLsdYGIqdGSTLhL 87 (730)
.+.++|... +-+.++.+++++||.++..+|.++.. .++++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777665 67788999999999999999988874 3566666665 456788999999999999999888
Q ss_pred eeecCCCCCCCCCCCCCCCCCCcccccccCCchhhcccccc-CCCC
Q 004801 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGV 132 (730)
Q Consensus 88 VlRlpggpsss~~sI~v~tgrtitl~VspsdTIesVK~~Iq-~EGI 132 (730)
..+... ..+.-.+|......|+...++..+-..+. +-|+
T Consensus 82 ~~~~~~------~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L 121 (371)
T 3ivf_A 82 RKKQRP------LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI 121 (371)
T ss_dssp EECEEE------EEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC
T ss_pred cCceeE------EEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 654321 11222566667777887777666555444 3444
No 135
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.71 E-value=0.0055 Score=56.09 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ ..|||+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 467788899999999999999999 89999999999974
No 136
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.49 E-value=0.0015 Score=54.77 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 456778899999999999999999 89999999999874
No 137
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.48 E-value=0.0017 Score=58.13 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIf 141 (730)
..++.+.+.|++++||+.||.+|+ ++||||++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 457788899999999999999999 9999999999853
No 138
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=94.43 E-value=0.0069 Score=57.80 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||..|+ .+|||+++|||+|.
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 457778899999999999999999 89999999999986
No 139
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.43 E-value=0.0014 Score=56.00 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=36.9
Q ss_pred CCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
|.+++ ..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 34444 567888899999999999999999 89999999999974
No 140
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.29 E-value=0.0032 Score=54.89 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.++++|..||.+|+ ++|||+++|||+|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 456778899999999999999999 99999999999986
No 141
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.28 E-value=0.2 Score=46.01 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=52.5
Q ss_pred CcEEEEEEecC--CcEEEEEecCCCCHHHHHHHHHHhh--CCC------CCCeEEEeC----CeecCch-----------
Q 004801 17 TTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD----------- 71 (730)
Q Consensus 17 ~tMqItVKtLd--GKT~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIFk----GKvLkDd----------- 71 (730)
.+|.|+|-..+ +..+.+.|-..+||..+|+||.+.. ++| +++..|-+. |+.|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 45777776543 4568888889999999999997754 333 356667663 3556541
Q ss_pred --hhhcccccCCCCEEEEeee
Q 004801 72 --QLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 72 --kTLsdYGIqdGSTLhLVlR 90 (730)
.||+.|+|.||++|-|+.+
T Consensus 90 rLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEEC
T ss_pred EecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 142
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.0026 Score=56.53 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457778899999999999999999 99999999999975
No 143
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.17 E-value=0.0014 Score=55.95 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 456778899999999999999999 89999999999874
No 144
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.06 E-value=0.17 Score=48.12 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCcEEEEEEecC------CcEEEEEecCCCCHHHHHHHHHHhh--CCCC------CCeEEEe----CCe-ecCch-----
Q 004801 16 ETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC----RGK-VLKDD----- 71 (730)
Q Consensus 16 ~~tMqItVKtLd------GKT~tLeVdpsdTV~dLKekIeekt--GIPp------eqQRLIF----kGK-vLkDd----- 71 (730)
-.+|.|+|-..+ ...+.+.|-..+||..+|+||.+.. ++|- ++.-|-+ .|+ .|.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 356778776543 2468899999999999999998764 3432 3445544 233 35442
Q ss_pred --------hhhcccccCCCCEEEEeeecC
Q 004801 72 --------QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 72 --------kTLsdYGIqdGSTLhLVlRlp 92 (730)
.||+.|+|.||++|-|+.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred ccCCceeecchhccCCCCCCEEEEEECCC
Confidence 289999999999999988754
No 145
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.86 E-value=0.0022 Score=53.86 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346777899999999999999999 89999999999874
No 146
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.79 E-value=0.0032 Score=54.18 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=34.8
Q ss_pred CCCCC-CCCCCccc-ccccCCchhhcccccc-CCCCCcchhHHH
Q 004801 100 THNLP-GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (730)
Q Consensus 100 ~sI~v-~tgrtitl-~VspsdTIesVK~~Iq-~EGIPpdqQRLI 140 (730)
+.+++ ..++.+.+ .|.+++||..||.+|+ .+|||+++|||+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 44444 35667778 9999999999999999 999999999998
No 147
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.49 E-value=0.0047 Score=56.73 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhhcccccc-------CCCC--CcchhHHHHHh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-------~EGI--PpdqQRLIfav 143 (730)
.+|++++++|++++||..||.+|+ ++|+ |+++|||||+-
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G 71 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC
Confidence 567889999999999999999998 3475 69999999863
No 148
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.45 E-value=0.0037 Score=55.56 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=31.6
Q ss_pred CCCCCccc--ccccCCchhhccccc-c-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl--~VspsdTIesVK~~I-q-~EGIPpdqQRLIfa 142 (730)
..|+.+.+ .|.+++||..||.+| + .+|+|+++|||||+
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 44565555 556999999999999 7 78999999999985
No 149
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=93.44 E-value=0.0023 Score=54.56 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 46677889999999999999999 99999999999974
No 150
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.41 E-value=0.34 Score=48.69 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.3
Q ss_pred EEEEEEecCCc--EEEEEecCCCCHHHHHHHHHHhhCCCCC-CeEEEe-CC----eecCc-hhhhcccccCCCCEEEEee
Q 004801 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-RG----KVLKD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtLdGK--T~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIF-kG----KvLkD-dkTLsdYGIqdGSTLhLVl 89 (730)
+.|++...... .+++.++..+||.+||+++++.++|+.+ +.||-. .+ ..|.| +++|.+++|.++..|.|-+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 44555443322 3557789999999999999999999997 688864 32 35665 5899999999999999998
Q ss_pred ecCCC
Q 004801 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
+...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 86654
No 151
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=93.33 E-value=0.0027 Score=52.52 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.++|.++++|..||..++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 456778899999999999999999 89999999999875
No 152
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.26 E-value=0.0023 Score=55.48 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=36.4
Q ss_pred CCCCCCCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~sI~v~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+++.+++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 44444346777889999999999999999 89999999999975
No 153
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.15 E-value=0.4 Score=47.69 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.7
Q ss_pred EEEEEEecCC--cEEEEEecCCCCHHHHHHHHHHhhCCCCC-CeEEE--e-CC--eecCc-hhhhcccccCCCCEEEEee
Q 004801 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtLdG--KT~tLeVdpsdTV~dLKekIeektGIPpe-qQRLI--F-kG--KvLkD-dkTLsdYGIqdGSTLhLVl 89 (730)
+.|++..... ..+++.++..+||.+|++++.+.++|+.+ +.||- | .+ ..|+| +++|.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455544332 23567889999999999999999999997 68875 3 23 35655 5799999999999999988
Q ss_pred ecCCC
Q 004801 90 RQPVP 94 (730)
Q Consensus 90 Rlpgg 94 (730)
+...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 86554
No 154
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=93.01 E-value=0.0027 Score=52.19 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.2
Q ss_pred CCCCCc-ccc-cccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrti-tl~-VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+ .++ |.+++||+.||.+|+ .+|+|+++|||+|.
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346664 788 999999999999999 89999999999874
No 155
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.95 E-value=0.0061 Score=52.38 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.2
Q ss_pred CcccccccCCchhhcccccc-CC--CCCcchhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~E--GIPpdqQRLIfa 142 (730)
.+.+.|.+++||..||.+|+ .. |+|+++|||||.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 34556679999999999999 66 999999999975
No 156
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.91 E-value=0.0044 Score=52.31 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=33.2
Q ss_pred CCC-CCccc-ccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tg-rtitl-~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..+ +.+.+ .|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 345 56788 5999999999999999 89999999999974
No 157
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.90 E-value=0.006 Score=50.47 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.++.+.+.|.+++||..||..|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 12 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45667789999999999999999 89999999999974
No 158
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=92.83 E-value=0.0037 Score=56.70 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=31.9
Q ss_pred CCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 108 rtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..+++.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 567889999999999999999 99999999998754
No 159
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.79 E-value=0.0035 Score=54.95 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=31.8
Q ss_pred CCCc-ccccccCCchhhcccccc-CCCCCcchhHHHH
Q 004801 107 SRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 107 grti-tl~VspsdTIesVK~~Iq-~EGIPpdqQRLIf 141 (730)
++.+ .++|.+++||..||.+|+ .+|||+++|||+|
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 4567 489999999999999999 9999999999996
No 160
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=92.67 E-value=0.0036 Score=53.46 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.0
Q ss_pred CCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 100 ~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
|++++ ..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 44444 567888899999999999999999 89999999999974
No 161
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.004 Score=54.23 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 467778899999999999999999 89999999999974
No 162
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.48 E-value=0.0064 Score=54.04 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=29.0
Q ss_pred CcccccccCCchhhcccccc-C-CCCCc-chhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-G-DGVPS-EISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~-EGIPp-dqQRLIfa 142 (730)
.+.+.|.+++||..||.+|+ + +|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 45788899999999999999 3 67775 99999985
No 163
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.46 E-value=0.0051 Score=51.01 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 12 MGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 45667789999999999999999 89999999999984
No 164
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.39 E-value=0.01 Score=55.40 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCCCc-ccccccCCchhhccccc-----c-CCCCCc--chhHHHHH
Q 004801 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSA 142 (730)
Q Consensus 105 ~tgrti-tl~VspsdTIesVK~~I-----q-~EGIPp--dqQRLIfa 142 (730)
.+|+.+ .+.+++++||++||.+| + ++|+|+ ++|||||+
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 456666 58999999999999999 6 899997 89999986
No 165
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=92.39 E-value=0.0087 Score=55.57 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCchhhcccccc-------CCCCC--cchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-------~EGIP--pdqQRLIfa 142 (730)
.+|++++++|++++||++||.+|+ ++|+| +++|||||+
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 567888999999999999999998 36884 899999986
No 166
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.32 E-value=0.0048 Score=53.76 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.4
Q ss_pred CcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+.|.+++||+.||.+|+ .+|+|+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 56789999999999999999 89999999999874
No 167
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.29 E-value=0.0053 Score=54.34 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 356778899999999999999999 99999999999974
No 168
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.22 E-value=0.006 Score=50.12 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45667789999999999999999 89999999999874
No 169
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=92.20 E-value=0.0044 Score=53.04 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 456777889999999999999999 89999999999974
No 170
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.06 E-value=0.0058 Score=52.89 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCchhhcccccc-C---CCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~---EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 346677889999999999999999 5 8999999999975
No 171
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.93 E-value=0.0095 Score=52.36 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.7
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.++|.+++||+.||.+|+ ..|||+++|||+|.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4677789999999999999999 99999999999874
No 172
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=91.90 E-value=0.0058 Score=50.92 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCchhhcccccc-C---CCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~---EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 346777889999999999999999 4 8999999999874
No 173
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.89 E-value=0.78 Score=40.14 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=54.2
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCe-----ecCchhhhccc--ccCCCCEEEE
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY--HVEDGHTLHM 87 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGK-----vLkDdkTLsdY--GIqdGSTLhL 87 (730)
+...|.|+|.+. .++.|+|.+..+..+|+++|.++.+++++...|.|+.+ ++..+..|.+- .++++ .|.|
T Consensus 2 ~~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL 78 (83)
T 1oey_A 2 SHMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTL 78 (83)
T ss_dssp CSSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEE
T ss_pred CCCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEE
Confidence 344588888885 69999999999999999999999999999999999863 33333333332 23455 5776
Q ss_pred eee
Q 004801 88 VVR 90 (730)
Q Consensus 88 VlR 90 (730)
.++
T Consensus 79 ~C~ 81 (83)
T 1oey_A 79 WCE 81 (83)
T ss_dssp EEC
T ss_pred EEe
Confidence 664
No 174
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.84 E-value=0.0062 Score=53.10 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIf 141 (730)
.++.+.+.|.+++||..||.+|+ ..|||+++|||+|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 35667789999999999999999 9999999999995
No 175
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=91.70 E-value=0.005 Score=49.68 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346677889999999999999999 89999999999874
No 176
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=91.41 E-value=0.007 Score=58.26 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|.+++||..||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 467788899999999999999999 89999999999985
No 177
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.36 E-value=0.012 Score=51.13 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred CcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46688999999999999999 99999999999984
No 178
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.32 E-value=1.5 Score=36.16 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.9
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.|+|+|.-. .....+++....||.+|.+++ +++++...+..+|+.+..+. -|++|+.|.++--.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 388888774 344567788889999999876 56677778889999886554 68899999887543
No 179
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.85 E-value=1.5 Score=38.23 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=50.0
Q ss_pred CcEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHhhC-C----------CCCCeEEEeCCeecCchhhhcccc
Q 004801 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (730)
Q Consensus 17 ~tMqItVKtLd------G-KT~tLeVdpsdTV~dLKekIeektG-I----------PpeqQRLIFkGKvLkDdkTLsdYG 78 (730)
..|+|+||... | +...+++....||.+|++.+..++. + ......+..+|+.+.. ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46999999883 3 4677888778999999999987642 1 1234567778877753 677
Q ss_pred cCCCCEEEEee
Q 004801 79 VEDGHTLHMVV 89 (730)
Q Consensus 79 IqdGSTLhLVl 89 (730)
|++|+.|.++-
T Consensus 83 L~dGDeV~i~p 93 (98)
T 1vjk_A 83 LKDGDVVGVFP 93 (98)
T ss_dssp CCTTCEEEEES
T ss_pred CCCCCEEEEEC
Confidence 89999998874
No 180
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=90.80 E-value=0.0035 Score=55.97 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 45667789999999999999999 89999999999874
No 181
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=90.20 E-value=0.012 Score=50.88 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346667789999999999999999 89999999999974
No 182
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=90.18 E-value=0.74 Score=42.65 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=52.1
Q ss_pred CcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHhh--CCCC------CCeEEEeC-C---e-ecCc---------h
Q 004801 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLICR-G---K-VLKD---------D 71 (730)
Q Consensus 17 ~tMqItVKtLd---GKT~tLeVdpsdTV~dLKekIeekt--GIPp------eqQRLIFk-G---K-vLkD---------d 71 (730)
.+|.|+|-..+ ...+.+.|-..+||..+|+||.+.. ++|. ++..|-+. | + .|.| .
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 45677765543 3457888889999999999997753 3433 45566652 3 3 3443 1
Q ss_pred ----hhhcccccCCCCEEEEeeec
Q 004801 72 ----QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 72 ----kTLsdYGIqdGSTLhLVlRl 91 (730)
.||+.|+|.||++|-|+.+.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 36899999999999998765
No 183
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=90.16 E-value=0.014 Score=52.34 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=43.5
Q ss_pred CEEEEeeecCCCCCCCCCCCCCCCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 83 STLhLVlRlpggpsss~~sI~v~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|.|.++.+..... ...-.+|+.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~---~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDK---TEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSS---CSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCccc---cccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 467777776542110 0111578888899999999999999999 89999999999984
No 184
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=90.10 E-value=0.025 Score=55.84 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ .+|||+++|+|+|.
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 467888899999999999999999 89999999999974
No 185
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=89.78 E-value=0.0096 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456778899999999999999999 89999999999974
No 186
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.77 E-value=1.2 Score=41.92 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=51.5
Q ss_pred cEEEEEEec--CCcEEEEEecCCCCHHHHHHHHHHhh--CCC------CCCeEEEeC-C---e-ecCc---------h--
Q 004801 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D-- 71 (730)
Q Consensus 18 tMqItVKtL--dGKT~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIFk-G---K-vLkD---------d-- 71 (730)
++.|+|-.. ++..+.+.|-..+||..+|+||.+.. ++| +++..|-+. | + .|.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 455554332 34567888889999999999997754 333 356677662 3 3 3543 1
Q ss_pred --hhhcccccCCCCEEEEeeec
Q 004801 72 --QLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 72 --kTLsdYGIqdGSTLhLVlRl 91 (730)
.||..|+|.||++|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 36899999999999998764
No 187
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=89.76 E-value=0.021 Score=50.24 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 3456789999999999999999 89999999999874
No 188
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.73 E-value=0.017 Score=49.68 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=32.7
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5667789999999999999999 89999999999874
No 189
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.20 E-value=0.033 Score=48.23 Aligned_cols=32 Identities=9% Similarity=-0.123 Sum_probs=28.9
Q ss_pred cc-ccccCCchhhcccccc--CCCCCcchhHHHHH
Q 004801 111 GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (730)
Q Consensus 111 tl-~VspsdTIesVK~~Iq--~EGIPpdqQRLIfa 142 (730)
.+ +|.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 36 8999999999999999 48999999999875
No 190
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=89.15 E-value=0.011 Score=47.56 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.++.+.+.|.+++||..+|..|+ ..|+|++.|+|+|.
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 45667789999999999999999 89999999999974
No 191
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.08 E-value=0.014 Score=49.84 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=32.9
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45667789999999999999999 89999999999864
No 192
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.07 E-value=0.027 Score=50.11 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=40.4
Q ss_pred CCCEEEEeeecCCCCCCCCCCCCCCCCCCccccccc-CCchhhcccccc-CCCCCcchhHHHHH
Q 004801 81 DGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 81 dGSTLhLVlRlpggpsss~~sI~v~tgrtitl~Vsp-sdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
....+.|.++.+.. ..++.+.+.|.+ ++||..||.+|+ ..|||+++|+|+|.
T Consensus 24 ~~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 24 HPGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp CCSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 33456666664321 146677889998 999999999999 89999999999973
No 193
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.84 E-value=0.02 Score=48.92 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCCcccccccC-----Cchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~Vsps-----dTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.++ .||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 44566788885 99999999999 89999999999964
No 194
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.63 E-value=0.039 Score=50.27 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=31.0
Q ss_pred CcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 109 titl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+...|.+++||+.||.+|+ .+|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 46678999999999999999 99999999999973
No 195
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.61 E-value=0.029 Score=51.49 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5567789999999999999999 89999999999975
No 196
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=88.55 E-value=0.015 Score=47.32 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4556789999999999999999 89999999999864
No 197
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.022 Score=51.27 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567788899999999999999999 89999999999975
No 198
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=88.03 E-value=1.8 Score=38.28 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCC-eEEEeCCee-----cC-ch---hhhcccccCCCC
Q 004801 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGKV-----LK-DD---QLLSAYHVEDGH 83 (730)
Q Consensus 14 ~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIFkGKv-----Lk-Dd---kTLsdYGIqdGS 83 (730)
++...|+|++.. +|..+.+.|+++.+..+|+++|.+.+++...+ ..|.|.... |. |. ..|.-|.+...+
T Consensus 2 ~~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~ 80 (89)
T 1vd2_A 2 PLGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDS 80 (89)
T ss_dssp CCSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCC
T ss_pred CCCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCC
Confidence 345668999877 57899999999999999999999999987654 678887642 22 22 335556666665
Q ss_pred EEEEee
Q 004801 84 TLHMVV 89 (730)
Q Consensus 84 TLhLVl 89 (730)
.|.+.+
T Consensus 81 ~l~ihv 86 (89)
T 1vd2_A 81 ELLIHV 86 (89)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 544443
No 199
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=88.01 E-value=1.2 Score=37.69 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
|+|+||....+...+++....||.+|-+ +.+++++.-.+..+|+.+..+. +.+|++|.++---
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V 63 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLI 63 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEee
Confidence 7888888755566689999999988764 5789998888888999886554 3358888876543
No 200
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.98 E-value=0.0087 Score=54.07 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=29.1
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQ 137 (730)
.+|+.+.+.|.+++||++||.+|+ ++|+|++.|
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 678889999999999999999999 888888543
No 201
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.55 E-value=0.042 Score=48.38 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.5
Q ss_pred cccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.++|.+++||..||.+|+ ..||++++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999875
No 202
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.39 E-value=1.3 Score=38.76 Aligned_cols=71 Identities=6% Similarity=0.027 Sum_probs=45.6
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCC-CCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdps-dTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+.-...+|+|+| +|+.+. +... .||.+|.+++ +++++...+..+|+.+..+ ...++-|++||.|.++--
T Consensus 14 ~~~~~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 14 SGHIGGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp --------CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE
T ss_pred CCCCCcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc
Confidence 344556677766 566554 5565 8999998876 5667777788999887543 344567999999998864
Q ss_pred cC
Q 004801 91 QP 92 (730)
Q Consensus 91 lp 92 (730)
..
T Consensus 84 V~ 85 (87)
T 1tyg_B 84 VG 85 (87)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 203
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=87.34 E-value=0.018 Score=50.69 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.5
Q ss_pred cccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 110 itl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999874
No 204
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=87.28 E-value=0.034 Score=49.50 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCCCcccccc-cCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~Vs-psdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+|+. .++|. +++||..||.+|+ +.|||+++|||++.
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 3443 57899 9999999999999 99999999999754
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=86.39 E-value=0.025 Score=50.51 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfav 143 (730)
...+.+.+.+.+.++|..||..|+ ++|||+++|+|+|.-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345567799999999999999999 999999999999865
No 206
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=85.79 E-value=2.2 Score=35.22 Aligned_cols=68 Identities=7% Similarity=0.205 Sum_probs=45.5
Q ss_pred EEEEEEecCC-cEEEEEecCCCCHHHHHHHHHHhhCCCC--CCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtLdG-KT~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
|.|+||.... +.-.+++ ...||.+|++++..+.++.. ....+..+|+.+.+ .++-|++|+.|.++-..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 6678877642 1133666 56899999999987543322 44567778877543 35678999999987543
No 207
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.74 E-value=5.2 Score=33.71 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=42.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHhhC-C-----C-----CCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 29 QTYTLRVDKQVPVPALKEQIASVTG-V-----L-----SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 29 KT~tLeVdpsdTV~dLKekIeektG-I-----P-----peqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+...+++....||.+|++.+..++. + . ....++..+|+...+ ++-|++|+.|.++-..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCC
Confidence 5678888878899999999988752 1 0 012567778887764 5678999999987543
No 208
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=85.44 E-value=3.4 Score=38.80 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=48.9
Q ss_pred CcEEEEEEe---cC------CcEEEEEecCCCCHHHHHHHHHHh----hCCCC----CCeEEEeC-C---eecC------
Q 004801 17 TTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVLK------ 69 (730)
Q Consensus 17 ~tMqItVKt---Ld------GKT~tLeVdpsdTV~dLKekIeek----tGIPp----eqQRLIFk-G---KvLk------ 69 (730)
.++.|+|-. .. ...+.+.|-..+||..+|+||.+. .++|- +++.|-+. | +.|.
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456777766 32 246888999999999999999654 36554 34444442 2 2222
Q ss_pred ----ch----hhhcccccCCCCEEEEee
Q 004801 70 ----DD----QLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 70 ----Dd----kTLsdYGIqdGSTLhLVl 89 (730)
+. .||+.|+|.||++|-|+.
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 21 367889999999998875
No 209
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=84.78 E-value=4.6 Score=36.35 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred CCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeE-EE------eCCeecCchhhh----cccccCC
Q 004801 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LI------CRGKVLKDDQLL----SAYHVED 81 (730)
Q Consensus 13 ~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQR-LI------FkGKvLkDdkTL----sdYGIqd 81 (730)
..+...+-|+|-..||....|.|+..+|+.++-+++.+|.++..+.-. |+ +--+.|+|+..| ..+.+..
T Consensus 4 ~~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s 83 (100)
T 1wgr_A 4 GSSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGG 83 (100)
T ss_dssp CCCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSS
T ss_pred cccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCC
Confidence 345556788888899999999999999999999999999987654432 22 123678888654 4455666
Q ss_pred CCEEEEeeecC
Q 004801 82 GHTLHMVVRQP 92 (730)
Q Consensus 82 GSTLhLVlRlp 92 (730)
...|.+..+..
T Consensus 84 ~nr~~F~kr~~ 94 (100)
T 1wgr_A 84 DSRFVFRKNFA 94 (100)
T ss_dssp CCEEEECSCCS
T ss_pred CcEEEEecchh
Confidence 77777765543
No 210
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.25 E-value=4.5 Score=36.78 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=49.8
Q ss_pred CcEEEEEEecC------C--cEEEEEecC---CCCHHHHHHHHHHhhCCCCCCeEEEeC-Ce------ecCch---hhh-
Q 004801 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL- 74 (730)
Q Consensus 17 ~tMqItVKtLd------G--KT~tLeVdp---sdTV~dLKekIeektGIPpeqQRLIFk-GK------vLkDd---kTL- 74 (730)
.+|+|+|+... + +.+.+++.. ..||.+|.+.|.+++ +..+.+|+.. |+ +|-++ +.|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 56999999884 2 466788873 369999999998876 2223333322 32 22222 233
Q ss_pred -cccccCCCCEEEEeeecCCC
Q 004801 75 -SAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 75 -sdYGIqdGSTLhLVlRlpgg 94 (730)
.+|.|++|+.|.++-...++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 35889999999998776665
No 211
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.77 E-value=0.059 Score=46.25 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=29.8
Q ss_pred CCCCCcccccccCCchhhccccccCCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq~EGIPpdqQRLIfa 142 (730)
..++.+.+.|.+++||..||.+|+..- +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST--TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC--cCcEEEEEC
Confidence 346677889999999999999999332 899999974
No 212
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=82.74 E-value=0.075 Score=56.13 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.6
Q ss_pred CCCCCC--CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 99 ~~sI~v--~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+++++ ..++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 344444 467888899999999999999999 89999999999975
No 213
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.43 E-value=0.097 Score=46.36 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.6
Q ss_pred cccC-Cchhhcccccc-CC--CCCcch-hHHHHH
Q 004801 114 VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (730)
Q Consensus 114 Vsps-dTIesVK~~Iq-~E--GIPpdq-QRLIfa 142 (730)
|+++ +||..||.+|+ .. |+|+++ |||+|.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 5565 99999999999 77 999999 999874
No 214
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=80.64 E-value=0.098 Score=56.44 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCchhhccccccC----CCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDRG----DGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq~----EGIPpdqQRLIfa 142 (730)
..|+.+.++|.+++||..||.+|+. +|||+++|||||.
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 4577788999999999999999983 6899999999986
No 215
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=80.45 E-value=3.3 Score=36.66 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=54.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+.-.++-..++..||+.++.+.++..+.-.+...+..|+++++|.+-+|+-.-.+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4446778899999999999999999999999999988999999999999988888887764
No 216
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.40 E-value=5.6 Score=40.13 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=52.1
Q ss_pred cEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCC-eEEEe---CCe--ecCchhhhcccccCCCCEEEEeee
Q 004801 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 18 tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIF---kGK--vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+|.|.|..+|| ++.+.|+.+.|+.+|-++|+++.++...+ .=|.| +|. .|+.++.|.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47899999998 78899999999999999999999987543 23444 232 466677777766555544444443
No 217
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.26 E-value=5.9 Score=40.54 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=54.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCC-eEEEe--CCe--ecCchhhhcccccCCCCEEEEeee
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIF--kGK--vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
...|.+.|..+|| ++.+.|+.+.|+.+|-++|+.+.++...+ .=|.| +|. .|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5678999999998 88899999999999999999999987532 34444 342 477778888876655554444444
No 218
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=80.16 E-value=4.1 Score=46.93 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=52.3
Q ss_pred CCcEEEEEEecCC------cEEEEEecCCCCHHHHHHHHHHhh--CCCC------CCeEEEeC----Ce-ecCch-----
Q 004801 16 ETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLICR----GK-VLKDD----- 71 (730)
Q Consensus 16 ~~tMqItVKtLdG------KT~tLeVdpsdTV~dLKekIeekt--GIPp------eqQRLIFk----GK-vLkDd----- 71 (730)
-.+|.|+|-..+| ..+.+.|-..|||..+|+||.+.. ++|- ++..|-+. |+ .|.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 4557777765432 457889999999999999998643 3333 44555542 33 35442
Q ss_pred --------hhhcccccCCCCEEEEeeecC
Q 004801 72 --------QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 72 --------kTLsdYGIqdGSTLhLVlRlp 92 (730)
.||+.|+|.||++|-|+.+..
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~ 363 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLT 363 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ecCcceeecchhhcCCCCCcEEEEEeccc
Confidence 379999999999999987653
No 219
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=79.76 E-value=6.8 Score=34.54 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE-eCCe----ecCchhhhcccccCCCCEEEE
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK----VLKDDQLLSAYHVEDGHTLHM 87 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-FkGK----vLkDdkTLsdYGIqdGSTLhL 87 (730)
..|+|+|-. ++..|.|.|..+.+..+||.||.++..+ +...|+ |++. .|.++..|. +-|+..++|.|
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~-~aiqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVS-NIIQAKLKISV 82 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHH-HHHHTTCCEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHH-HHHHhcCeeEE
Confidence 558888866 5689999999999999999999999988 344444 4443 344444442 23455555544
No 220
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=78.39 E-value=8 Score=32.92 Aligned_cols=72 Identities=6% Similarity=0.041 Sum_probs=45.5
Q ss_pred EEEEEEecC------CcEEEEEecCCCCHHHHHHHHHHhhCC------C-------CCCeEEEeCCeecCchhhhccccc
Q 004801 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTGV------L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (730)
Q Consensus 19 MqItVKtLd------GKT~tLeVdpsdTV~dLKekIeektGI------P-------peqQRLIFkGKvLkDdkTLsdYGI 79 (730)
|+|+|+... |+...+++ ...||.+|++.+..++.- . ....++..+|+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667777662 33334665 457999999999887520 0 113566777876654222 25678
Q ss_pred CCCCEEEEeeecC
Q 004801 80 EDGHTLHMVVRQP 92 (730)
Q Consensus 80 qdGSTLhLVlRlp 92 (730)
++|+.|.++-...
T Consensus 79 ~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 79 ADGDSVTILPAVA 91 (93)
T ss_dssp CTTCEEEEEECCT
T ss_pred CCCCEEEEECCCC
Confidence 9999998885443
No 221
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=78.22 E-value=5.5 Score=32.16 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 27 dGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
+|+.+ ++....||.+|.+++ +++.+...+..+|+.+..+ ...++-|++|+.|.++--.
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56665 456678999999876 5667777788889887543 2345678999999887543
No 222
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=78.06 E-value=4.6 Score=41.44 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred CCCCCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCC-eEEEeC---C--eecCchhhhcccccCCCCEE
Q 004801 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 12 s~~s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIFk---G--KvLkDdkTLsdYGIqdGSTL 85 (730)
.++....|.+.|..+||....+.|+...|+.+|-++|.++.++...+ .=|.|. | ..|+.++.|.+.......++
T Consensus 11 ~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l 90 (296)
T 3qij_A 11 RENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNF 90 (296)
T ss_dssp ------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEE
T ss_pred CCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEE
Confidence 45666779999999999999999999999999999999999987533 345443 2 24677777777643334455
Q ss_pred EEeee
Q 004801 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
++.++
T Consensus 91 ~frvk 95 (296)
T 3qij_A 91 TFNVK 95 (296)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 55444
No 223
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=78.01 E-value=14 Score=32.03 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=43.4
Q ss_pred cEEEEEEecC-------C-cEEEEEec--CCCCHHHHHHHHHHhhCCCCCC-------------eEEEeCCeecCchhhh
Q 004801 18 TIEIKIKTLD-------S-QTYTLRVD--KQVPVPALKEQIASVTGVLSEQ-------------QRLICRGKVLKDDQLL 74 (730)
Q Consensus 18 tMqItVKtLd-------G-KT~tLeVd--psdTV~dLKekIeektGIPpeq-------------QRLIFkGKvLkDdkTL 74 (730)
+|+|+|+... | +...+++. ...||.+|++.+.+++.-...+ ..+..+++.. ..+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~---~~~ 77 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDW---ELE 77 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEG---GGG
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEc---ccc
Confidence 3788888762 2 45667776 5789999999998876311111 1122333211 122
Q ss_pred --cccccCCCCEEEEeeec
Q 004801 75 --SAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 75 --sdYGIqdGSTLhLVlRl 91 (730)
.++-|++|+.|.++-..
T Consensus 78 ~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 78 GEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp TGGGCBCCTTCEEEEEECT
T ss_pred CCCCcCcCCCCEEEEECCC
Confidence 35779999999887543
No 224
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=77.37 E-value=0.11 Score=44.16 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=29.7
Q ss_pred CCCCCcccc-cccCCchhhcccccc-CCCCCcchhHHHH
Q 004801 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 105 ~tgrtitl~-VspsdTIesVK~~Iq-~EGIPpdqQRLIf 141 (730)
.+|+.+ +. +.+++||..||..|+ +.|||+++|+|+|
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 344433 45 889999999999999 8999999999975
No 225
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=76.18 E-value=6.2 Score=33.05 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=44.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 27 dGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
+|+.+.+ ...||.+|.+. .+++++..-+.++|+.+.. ....++-|++||.|.++--..++
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 5776655 56899888764 5788888888899988743 34566789999999998766554
No 226
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=76.14 E-value=7.2 Score=32.05 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=39.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHhhC-----CCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 29 KT~tLeVdpsdTV~dLKekIeektG-----IPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+.+.++ ....||.+|++.+..++. +......+..+|+.... ++-|++|+.|.++-.
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPP 77 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCC
Confidence 355555 567799999999875531 22334577888887753 567899999988743
No 227
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=76.08 E-value=9.1 Score=40.21 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCC-CCeEEEeCC---------eecCchhhhcccccCCCCEEE
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIFkG---------KvLkDdkTLsdYGIqdGSTLh 86 (730)
..+.+.|..++|....+.|+.+.|+.+|-++|+++.++.. +..-|.+.. +-|+.+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 3477889999999999999999999999999999999765 233455432 234445566665555555555
Q ss_pred Eeee
Q 004801 87 MVVR 90 (730)
Q Consensus 87 LVlR 90 (730)
+.++
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
No 228
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=75.86 E-value=0.17 Score=53.38 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=32.6
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIf 141 (730)
.|+.+.+.|.+++||..||.+|+ ..|||+++|+||+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 35667789999999999999999 9999999999994
No 229
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=73.69 E-value=10 Score=43.61 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=53.4
Q ss_pred CCcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHHhh--CCC------CCCeEEEeC----Ce-ecCc---------
Q 004801 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GK-VLKD--------- 70 (730)
Q Consensus 16 ~~tMqItVKtLd---GKT~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIFk----GK-vLkD--------- 70 (730)
-.+|.|+|-..+ ...+.+.|-..|||..+|+||.+.. ++| +++..|-+. |+ .|.|
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 456778876554 3568889999999999999997753 333 355566542 33 3433
Q ss_pred h----hhhcccccCCCCEEEEeeecC
Q 004801 71 D----QLLSAYHVEDGHTLHMVVRQP 92 (730)
Q Consensus 71 d----kTLsdYGIqdGSTLhLVlRlp 92 (730)
+ .||+.|+|.||++|-|+.+..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 1 378999999999999988763
No 230
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=72.91 E-value=12 Score=32.66 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=44.2
Q ss_pred cEEEEEEecC------C-cEEEEEecCCCCHHHHHHHHHHhhC-CCC---------CCe-------EEEeCCeecCchhh
Q 004801 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (730)
Q Consensus 18 tMqItVKtLd------G-KT~tLeVdpsdTV~dLKekIeektG-IPp---------eqQ-------RLIFkGKvLkDdkT 73 (730)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 5889999874 2 344444 6899999999987742 111 122 5667776553221
Q ss_pred hcccccCCCCEEEEeee
Q 004801 74 LSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 74 LsdYGIqdGSTLhLVlR 90 (730)
-.++-|++|+.|.++-.
T Consensus 79 ~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 79 GLETLLKDSDEIGILPP 95 (99)
T ss_dssp STTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCEEEEECC
Confidence 23456899999988743
No 231
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.64 E-value=8.7 Score=43.50 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=55.9
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCC-CeEEEeC---C--eecCchhhhcccccCCCCEEEEeee
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIFk---G--KvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
..|.|.|..+|| ++.|.|+.++|+.+|-..|+.+.|+.-. ..=|.|. | ..|+.++.|.+.+++.+..+.|.++
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 568999999998 7889999999999999999999998653 3345553 2 3567778888877766655555444
Q ss_pred c
Q 004801 91 Q 91 (730)
Q Consensus 91 l 91 (730)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 3
No 232
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.94 E-value=1.7 Score=39.41 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=46.1
Q ss_pred CcEEEEEEecC------CcEEEEEecC----CCCHHHHHHHHHHhhCCCCCCeEEEeC-C--e------ecCchh---hh
Q 004801 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLICR-G--K------VLKDDQ---LL 74 (730)
Q Consensus 17 ~tMqItVKtLd------GKT~tLeVdp----sdTV~dLKekIeektGIPpeqQRLIFk-G--K------vLkDdk---TL 74 (730)
.+|+|+||... |+...+++.. ..||.+|-+.|.+.+ +..+-+|+.. | + +|-+++ .|
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 35888888874 3555666663 249999888888775 2223333322 3 2 333332 23
Q ss_pred --cccccCCCCEEEEeeecCC
Q 004801 75 --SAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 75 --sdYGIqdGSTLhLVlRlpg 93 (730)
.+|-|++|++|.++-...+
T Consensus 81 ~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCC
T ss_pred CCcccCCCCcCEEEEeCCCcc
Confidence 3588999999888765544
No 233
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=69.93 E-value=3.6 Score=38.23 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC
Q 004801 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR 64 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFk 64 (730)
..+.|-.++|+.+||+.|++.+|+|+++|||-+-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4578899999999999999999999999998643
No 234
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=69.88 E-value=7.5 Score=31.71 Aligned_cols=56 Identities=4% Similarity=0.149 Sum_probs=40.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHhhCCCCCCe--EEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 29 KT~tLeVdpsdTV~dLKekIeektGIPpeqQ--RLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+...+++....||.+|++.+...+. ..... .+..+|+.+.. +.-|++|+.|.++--
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 4566777777899999999877642 01233 67888988764 367899999988743
No 235
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.31 E-value=5.9 Score=33.66 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=47.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCC-CCCeEEEeCCeecCchhhhcccccCCCCEEEEeeecCCC
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIP-peqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRlpgg 94 (730)
|+|+| +|+.+.+......||.+|.+.+ +++ ++..-+.++|+.+..+ ...++-|++||.|.++--..++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 45555 5776554321568999887754 677 7777788999887433 4556779999999998766554
No 236
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=68.86 E-value=15 Score=33.35 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=52.8
Q ss_pred CCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEE---eCCe--ecCchhhhcccccCCCCEEEEeee
Q 004801 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLI---FkGK--vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
...+-..|-..+...+++.+....|+.+|+..++++.+...+.+.|+ ++|. +|+++..--.-.+.-...|++..+
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33455677777878888999999999999999999999876678775 6774 345543322223444566666655
No 237
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=68.71 E-value=23 Score=32.13 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=55.4
Q ss_pred EEEEEEecCC---cEEEEEecCCCCHHHHHHHHHHhhCCCC--CCeEEEeCCe---ecCchhhhcccccCCCCEEEEeee
Q 004801 19 IEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGK---VLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtLdG---KT~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIFkGK---vLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
+.|+|..++. ..++++|..+.-|.-|.-+|-++..++. .+--|-.--| +|+-..+|..|||+.+..|++.-.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 6777777554 5688999999999999999998887654 3444444332 568889999999999999988643
No 238
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=61.81 E-value=15 Score=29.50 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred cCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 26 LdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+|+.+.+ ...||.+|.+++ +++.+...+..+|+.+..+ ...++-|++|+.|.++--.
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 36777654 568999998877 4556667778888877533 3345678999999988543
No 239
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.55 E-value=23 Score=36.58 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCC-eec-Cchhhhccccc
Q 004801 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVL-KDDQLLSAYHV 79 (730)
Q Consensus 28 GKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkG-KvL-kDdkTLsdYGI 79 (730)
-....+.+.+..|+.+||++|++.++++++.|.|+|.+ +.. +..+....|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 45567889999999999999999999999999999998 443 33344445543
No 240
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=60.26 E-value=0.51 Score=41.35 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfavl 144 (730)
.+++.+.+.|+++.++..|+..+. +.|++++++||+|.--
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 55 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 55 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 456778899999999999999988 9999999999998743
No 241
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.10 E-value=0.51 Score=43.81 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=32.3
Q ss_pred CCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 107 grtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
+..+...++++.+|..||..+. ..++|+++|||||+
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 4456788999999999999998 88999999999987
No 242
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=55.74 E-value=16 Score=29.33 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=40.1
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|.|+|...+|+. +++....|+.+|-+.|....+ ....-...+|+..+- ++-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 567787777876 456678999999888733221 111223457776544 366778888887753
No 243
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.66 E-value=11 Score=43.67 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCe-ecCchhhhccc
Q 004801 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (730)
Q Consensus 27 dGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGK-vLkDdkTLsdY 77 (730)
..+.+.+.+.+++|+.+||..|++.++|+++.|.|++... .++.......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 4566778999999999999999999999999999998854 45555555554
No 244
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=53.61 E-value=18 Score=32.57 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=37.6
Q ss_pred cEEEEEEecC-------CcEEEEEecCCCCHHHHHHHHHHhhCCCC-----CCeEEEeCC
Q 004801 18 TIEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRG 65 (730)
Q Consensus 18 tMqItVKtLd-------GKT~tLeVdpsdTV~dLKekIeektGIPp-----eqQRLIFkG 65 (730)
.|+|+|...+ +..+.|-|.++.+..+|..+|.++.+++. ...+|-|+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 3888888753 56789999999999999999999998652 224677765
No 245
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=48.30 E-value=53 Score=27.24 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=38.0
Q ss_pred EEecCCCCHHHHHHHHHHhhC------C-----CCCCeEEEeCCeecCchhhhcccccCCCCEEEEeee
Q 004801 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 33 LeVdpsdTV~dLKekIeektG------I-----PpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
++++...||.+|.+.+..++. + ......+..+|+.+... .-.++-|++|+.|.++-.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCC
Confidence 456556899999999987742 1 11345677888766422 123556899999988743
No 246
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.98 E-value=36 Score=30.19 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCcEEEEEEecC---CcEEEEEecCCCCHHHHHHHHHH--h-hCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIAS--V-TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 16 ~~tMqItVKtLd---GKT~tLeVdpsdTV~dLKekIee--k-tGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
-++|+|.|...- .+.+.+++....||.++-+..-- + ..|......+..+|+..+ .++-+++|+.|.++-
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 356788876542 23466788899999998887643 2 245555678888888876 456688999998875
Q ss_pred ec
Q 004801 90 RQ 91 (730)
Q Consensus 90 Rl 91 (730)
-+
T Consensus 85 pl 86 (97)
T 2hj1_A 85 PL 86 (97)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 247
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=45.90 E-value=46 Score=30.91 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCC------CeEEE---eCCe--ecCchhhhcccccCCCCEE
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGHTL 85 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpe------qQRLI---FkGK--vLkDdkTLsdYGIqdGSTL 85 (730)
..+-..|-..+...+++.+....++.+|+..+++|.+...+ ++.|+ +.|. +|+++..--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 34667777777777889999999999999999999987554 67665 6774 4554433222223345666
Q ss_pred EEeee
Q 004801 86 HMVVR 90 (730)
Q Consensus 86 hLVlR 90 (730)
++..+
T Consensus 88 fvc~k 92 (120)
T 2dhz_A 88 FACTR 92 (120)
T ss_dssp EEECT
T ss_pred EEeeh
Confidence 66655
No 248
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.25 E-value=6.8 Score=33.68 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=31.4
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+......+.++.||..||.+|+ .-|+|+..|+|.+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 34556678899999999999999 89999999999753
No 249
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.02 E-value=29 Score=38.88 Aligned_cols=77 Identities=10% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCCCcEEEEEEecC--CcEEE----EEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC----C--eecC-chhhhccc--c
Q 004801 14 SSETTIEIKIKTLD--SQTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G--KVLK-DDQLLSAY--H 78 (730)
Q Consensus 14 ~s~~tMqItVKtLd--GKT~t----LeVdpsdTV~dLKekIeektGIPpeqQRLIFk----G--KvLk-DdkTLsdY--G 78 (730)
.....+-|++|..| .+++. +-|+.+.+|.+|-..|.++.|+|++.--++|. + ..|+ .+.++.++ .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 34456999999886 34443 57899999999999999999999976655554 2 3567 57899999 9
Q ss_pred cCCCCEEEEeee
Q 004801 79 VEDGHTLHMVVR 90 (730)
Q Consensus 79 IqdGSTLhLVlR 90 (730)
|.+|+.|.+=..
T Consensus 206 L~~GdII~fQ~~ 217 (530)
T 2ylm_A 206 LMDGDIIVFQKD 217 (530)
T ss_dssp CCTTEEEEEEEC
T ss_pred ccCCCEEEEEec
Confidence 999998866554
No 250
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=43.29 E-value=1.1 Score=36.98 Aligned_cols=38 Identities=3% Similarity=-0.082 Sum_probs=33.2
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+|+.+.+.|+++.++..++.... +.|+++.++||+|.
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 456677889999999999999888 89999999999986
No 251
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=42.98 E-value=27 Score=31.15 Aligned_cols=59 Identities=8% Similarity=0.240 Sum_probs=41.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCC-----------CeEEEeCC-eecCc------hhhhcccccCCCCEEEEe
Q 004801 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLKD------DQLLSAYHVEDGHTLHMV 88 (730)
Q Consensus 30 T~tLeVdpsdTV~dLKekIeektGIPpe-----------qQRLIFkG-KvLkD------dkTLsdYGIqdGSTLhLV 88 (730)
...|+|++++|+.+|-+.+.+.-.+-.. ...|++.. ..|+. +++|.++|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4468899999999999999985332111 33444444 34432 477999999999998884
No 252
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=40.96 E-value=45 Score=36.94 Aligned_cols=47 Identities=4% Similarity=0.063 Sum_probs=40.5
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCC--CCeEEEe
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLIC 63 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIF 63 (730)
..|.+.|..++|....+.|+...|+.+|-+.|+++.|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4589999999999999999999999999999999999974 3445554
No 253
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.92 E-value=18 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=29.2
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCCeEEE
Q 004801 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (730)
Q Consensus 32 tLeVdpsdTV~dLKekIeektGIPpeqQRLI 62 (730)
.++|..++|+.+||++|++.+|+++++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 5789999999999999999999999999985
No 254
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=40.68 E-value=2 Score=37.46 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfavl 144 (730)
.+|+.+.+.|+++.++..|+.... +.|++++++||+|.--
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 53 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 53 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 356678899999999999999888 8999999999998633
No 255
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=40.34 E-value=11 Score=31.36 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.7
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeecCchhhhcccccCCCCEEEEee
Q 004801 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
+++....||.+|.+.+ +++.+...+..+|+.+..+ +-|++|+.|.++-
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 4556678999998765 4666777788899988654 5688899887764
No 256
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=39.66 E-value=1.1 Score=37.86 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=33.0
Q ss_pred CCCC-CcccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 004801 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (730)
Q Consensus 105 ~tgr-titl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfa 142 (730)
.+++ .+.+.|+++.++..|+.... +.|++++++||+|.
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 4564 67899999999999999888 89999999999985
No 257
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=39.17 E-value=1.4e+02 Score=26.97 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=41.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCC--CeEE--EeCCeecCchhhhcccccCCCCEEEEeeec
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpe--qQRL--IFkGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
..=-++|+....+. ..-|- -.+..+|+.|..++++++.. ..+| ...|-.++|+.-+.. +. ..|+.+++..
T Consensus 17 ~~kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~t--Lp-~nT~lmvL~~ 90 (100)
T 1f2r_I 17 PLKPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC--LP-SNTKFVALAC 90 (100)
T ss_dssp CCEEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSS--SC-SCCEEEEECS
T ss_pred CCCCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhc--CC-CCCEEEEEcC
Confidence 33445566433333 33332 35799999999999999753 3444 456888877754333 23 4555555543
No 258
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=38.77 E-value=46 Score=31.26 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHhhCCCCCCeEEEe--CCeec-----Cc--hhhhcccccCCCCEEEEee
Q 004801 38 QVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 38 sdTV~dLKekIeektGIPpeqQRLIF--kGKvL-----kD--dkTLsdYGIqdGSTLhLVl 89 (730)
..|+.+|-+.|..++|..- +.-++- +.+.| +| +++|+++||++|+.|.++=
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 5799999888988898763 444441 23444 23 4899999999999887764
No 259
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.07 E-value=74 Score=28.24 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=44.1
Q ss_pred EEEEEEecC-CcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEe--CCeecCchhhhcccccCCCCEEEEeeec
Q 004801 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 19 MqItVKtLd-GKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIF--kGKvLkDdkTLsdYGIqdGSTLhLVlRl 91 (730)
--++|+..+ .+.+-|-+ .+..+|+.|..+++.++....+|+. +|-.++|+.-+..+ +..|+.+++..
T Consensus 10 kpfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 345555544 23344433 4799999999999999766666654 58888887655443 35667676654
No 260
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=37.05 E-value=61 Score=28.54 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=32.1
Q ss_pred CcEEEEEEecCCcEE-EEEec-CCCCHHHHHHHHHHhhCCCCCCeEE
Q 004801 17 TTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (730)
Q Consensus 17 ~tMqItVKtLdGKT~-tLeVd-psdTV~dLKekIeektGIPpeqQRL 61 (730)
.+..|+-|+...+.+ .+.++ ...+|.+||.+|.++.++-..+.-|
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 445677777665554 47777 5689999999999988775544443
No 261
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=35.53 E-value=3.7 Score=37.21 Aligned_cols=39 Identities=3% Similarity=-0.041 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfav 143 (730)
.+++.+.+.|.++.++..|+.... +.|++++++||+|.-
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG 73 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDG 73 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSS
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECC
Confidence 356678899999999999999888 899999999999853
No 262
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=32.56 E-value=2.4e+02 Score=24.83 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=54.2
Q ss_pred EEEEEEecCCcE-EEEEecCCCCHHHHHHHHHHhh-C--CCC--CCeEEEeCCee--cCchhhhcccccCCCCEEEEee
Q 004801 19 IEIKIKTLDSQT-YTLRVDKQVPVPALKEQIASVT-G--VLS--EQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtLdGKT-~tLeVdpsdTV~dLKekIeekt-G--IPp--eqQRLIFkGKv--LkDdkTLsdYGIqdGSTLhLVl 89 (730)
+-|..+..+.-. .-+.|+..+|+.++-+|++... | +.+ .-.|..++|.. |.++.++++-||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 445555544333 3468999999999999998754 3 322 35788899987 9999999999999999988875
No 263
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.74 E-value=4.6 Score=36.09 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 004801 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (730)
Q Consensus 105 ~tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfavl 144 (730)
.+++.+.+.|+++.++..|+.... +.|++++++||+|.--
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~ 72 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 72 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSS
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCE
Confidence 346677899999999999999888 8999999999998633
No 264
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=31.72 E-value=2.7 Score=36.52 Aligned_cols=40 Identities=3% Similarity=-0.124 Sum_probs=33.9
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHhhh
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (730)
+++.+.+.|.++.++..|+.... +.|++++++||+|.--.
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 45667789999999999999888 89999999999987443
No 265
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=31.69 E-value=78 Score=32.93 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC-------CeecCchhhhcc----cccCCCCEE
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA----YHVEDGHTL 85 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFk-------GKvLkDdkTLsd----YGIqdGSTL 85 (730)
..+-|+|-..+|....|.|++++|+.+|-+.+..+.++....-..+|. -+.|+|...|.+ ........|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 446677777889999999999999999999999888765544333322 267788766544 344455555
Q ss_pred EEe
Q 004801 86 HMV 88 (730)
Q Consensus 86 hLV 88 (730)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 266
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=31.13 E-value=18 Score=33.34 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=51.3
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCC--CCeEEEeCC---eecCchhhhcccccCCCCEEEEee
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVV 89 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIFkG---KvLkDdkTLsdYGIqdGSTLhLVl 89 (730)
++|+|..++ ..++++|..+.-|..|.-||-++..++. .+--|-.-- .+|+-..+|..|||+.+..+++.-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 556665544 7788999999999999999998877654 222333222 256788999999999999887653
No 267
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=29.32 E-value=2.9e+02 Score=24.23 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=52.1
Q ss_pred EEEEecCCcE-EEEEecCCCCHHHHHHHHHHhh-C--CCC---CCeEEEeCC--eecCchhhhcccccCCCCEEEEeee
Q 004801 21 IKIKTLDSQT-YTLRVDKQVPVPALKEQIASVT-G--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 21 ItVKtLdGKT-~tLeVdpsdTV~dLKekIeekt-G--IPp---eqQRLIFkG--KvLkDdkTLsdYGIqdGSTLhLVlR 90 (730)
|+-+..+.-. .-+.|+..+|+.++-+|++... | +.+ .-.+..++| +.|..+.|+++-||+.-..|.+...
T Consensus 4 l~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 4 IMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEETTCSBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred eeEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4444433332 3468999999999999998753 3 322 246778999 8999999999999999998887753
No 268
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=28.88 E-value=2.3e+02 Score=24.85 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCcEEEEEEecCCcEEEEEec--CCCCHHHHHHHHHHhhCCCCCCeEEEeCC---eec--Cch-hhhcccccCCCCEEEE
Q 004801 16 ETTIEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDD-QLLSAYHVEDGHTLHM 87 (730)
Q Consensus 16 ~~tMqItVKtLdGKT~tLeVd--psdTV~dLKekIeektGIPpeqQRLIFkG---KvL--kDd-kTLsdYGIqdGSTLhL 87 (730)
...++|+.|. +.....+.++ ...+.++|+.+|+....++.....|.|.. -.| .++ ..-..+..... .+.|
T Consensus 4 ~~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~p-lLRl 81 (86)
T 1wmh_B 4 MSIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP-PLRL 81 (86)
T ss_dssp -CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS-CEEE
T ss_pred CCEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhCCC-cEEE
Confidence 3557777777 5566556665 45899999999999999877778888865 333 333 33333333322 6666
Q ss_pred eee
Q 004801 88 VVR 90 (730)
Q Consensus 88 VlR 90 (730)
++.
T Consensus 82 ~Iq 84 (86)
T 1wmh_B 82 LVQ 84 (86)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 269
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.64 E-value=5.9 Score=35.70 Aligned_cols=40 Identities=5% Similarity=-0.074 Sum_probs=34.0
Q ss_pred CCCCcccccccCCchhhcccccc-CCCCCcchhHHHHHhhh
Q 004801 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (730)
Q Consensus 106 tgrtitl~VspsdTIesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (730)
+++.+.+.|+++.++..|+.... +.|++++++||+|.--.
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~r 79 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 79 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeE
Confidence 45667889999999999999888 89999999999986443
No 270
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=25.23 E-value=77 Score=32.47 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC-------CeecCchhhhcc
Q 004801 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA 76 (730)
Q Consensus 19 MqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFk-------GKvLkDdkTLsd 76 (730)
.-|+|-..+|....|.|++++|+.+|-+.+..+..+..+.-..+|. -+.|+|...+-+
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 4566667789999999999999999999999887765444433332 267788765544
No 271
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.06 E-value=84 Score=36.16 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.7
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCC
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPp 56 (730)
..|.+.|..++|..+.+.|+...|+.+|-+.|+.+.|+..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 4689999999999999999999999999999999998653
No 272
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.05 E-value=1.2e+02 Score=26.71 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHhhCCCCCCeE-EEeCCee
Q 004801 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (730)
Q Consensus 28 GKT~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIFkGKv 67 (730)
...|.|.|++..+=.++|+.|+..+++.+..-+ |+..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 368999999999999999999999999998774 5677764
No 273
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=24.21 E-value=1.4e+02 Score=29.43 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=35.9
Q ss_pred CcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhCCCCCCe
Q 004801 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ 59 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektGIPpeqQ 59 (730)
..+.|.|-..+|....|.|++.+|+.+|-+.+.++.++..+..
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 3456777777899999999999999999999999999876543
No 274
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=23.10 E-value=1.4e+02 Score=27.53 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHhh-CCCCCCeEEEeCCe---e--c-CchhhhcccccCCCCEEEEeee
Q 004801 39 VPVPALKEQIASVT-GVLSEQQRLICRGK---V--L-KDDQLLSAYHVEDGHTLHMVVR 90 (730)
Q Consensus 39 dTV~dLKekIeekt-GIPpeqQRLIFkGK---v--L-kDdkTLsdYGIqdGSTLhLVlR 90 (730)
.+...|+.+|...+ .+......|.|+.. . + .|+............++.|.++
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVk 115 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIK 115 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEE
Confidence 48999999999999 56666778888753 2 3 3444444444444567777765
No 275
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=22.30 E-value=1.3e+02 Score=27.31 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=48.7
Q ss_pred CCCcEEEEEEecCCcEEEEEecCCCCHHHHHHHHHHhhC-CCC-------CCeEEEe---CCe--ecCch-hhhcccccC
Q 004801 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VLS-------EQQRLIC---RGK--VLKDD-QLLSAYHVE 80 (730)
Q Consensus 15 s~~tMqItVKtLdGKT~tLeVdpsdTV~dLKekIeektG-IPp-------eqQRLIF---kGK--vLkDd-kTLsdYGIq 80 (730)
.+..+.|.+=..+|-.+.++|..+.|+.+||+.+-+..+ .|. +.-.+.+ .|. .|.|+ +.|.++...
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 346677888788999999999999999999999866532 221 2222221 122 46454 778777665
Q ss_pred CCCEEEEeee
Q 004801 81 DGHTLHMVVR 90 (730)
Q Consensus 81 dGSTLhLVlR 90 (730)
-..|.|+-|
T Consensus 96 -~piLklver 104 (108)
T 2v1y_A 96 -QPFLKVIEP 104 (108)
T ss_dssp -SSEEEEECC
T ss_pred -ceEEEEEee
Confidence 345555544
No 276
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=22.18 E-value=2.4e+02 Score=24.86 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=51.8
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeC-CeecCchhhhcccccCCCCEEEEeeecCC
Q 004801 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (730)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFk-GKvLkDdkTLsdYGIqdGSTLhLVlRlpg 93 (730)
..|.|........+-+-.++++++|+..--+|.+ |--+...++-...-++.|+.|.|+-|-+-
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 3468888888998888999999999988877766 55567778888888899999999987654
No 277
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=22.17 E-value=2.2e+02 Score=25.57 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHhh-CCCCCCeEEEeCCe-----ec-CchhhhcccccCCCCEEEEeeec
Q 004801 39 VPVPALKEQIASVT-GVLSEQQRLICRGK-----VL-KDDQLLSAYHVEDGHTLHMVVRQ 91 (730)
Q Consensus 39 dTV~dLKekIeekt-GIPpeqQRLIFkGK-----vL-kDdkTLsdYGIqdGSTLhLVlRl 91 (730)
.+..+|+.+|...+ ++......|.|+.. .+ .|+............+|.|.++.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 47999999999997 45556678888753 23 34444444444446688877753
No 278
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=21.25 E-value=3.9e+02 Score=23.34 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCcEEEEEEecCC----cEEEEEecCCCCHHHHHHHHHHhhCCCCCCeEEEeCCeec-Cchhhhcc----cccCCCCEEE
Q 004801 16 ETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL-KDDQLLSA----YHVEDGHTLH 86 (730)
Q Consensus 16 ~~tMqItVKtLdG----KT~tLeVdpsdTV~dLKekIeektGIPpeqQRLIFkGKvL-kDdkTLsd----YGIqdGSTLh 86 (730)
+..+.|.+|..+. +.-.+.|..+.|+.+|...|.++.++ +..-|+.+...+ ..+.++.+ |+ ++..|+
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~Ly 81 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDELI 81 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEEE
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEEE
Confidence 4456677666432 23446789999999999999999998 566666677543 43444443 34 455666
Q ss_pred Eeee
Q 004801 87 MVVR 90 (730)
Q Consensus 87 LVlR 90 (730)
+...
T Consensus 82 v~Ys 85 (91)
T 3w1s_C 82 VSYC 85 (91)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 279
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.81 E-value=67 Score=27.49 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=30.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCC-----CCCeEEEeCC
Q 004801 30 TYTLRVDKQVPVPALKEQIASVTGVL-----SEQQRLICRG 65 (730)
Q Consensus 30 T~tLeVdpsdTV~dLKekIeektGIP-----peqQRLIFkG 65 (730)
.+.|.|.++.+..+|..+|.+++++. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 67889999999999999999999975 3556777765
No 280
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=20.79 E-value=1.4e+02 Score=22.72 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004801 277 LAEVMQSTRQMLIEQSAECLHQLARQLEN 305 (730)
Q Consensus 277 L~~v~~~t~qll~~~a~~~Ls~la~qL~~ 305 (730)
.+..+..-+..++.+ +.+|++|..||.|
T Consensus 11 v~~AL~KiQ~VVN~q-~~aL~~Lt~QL~n 38 (38)
T 2beq_A 11 TSTALGKLQDVVNQN-AQALNTLVKQLSX 38 (38)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhcC
Confidence 345566667777888 8999999999864
No 281
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.42 E-value=4.8e+02 Score=23.61 Aligned_cols=73 Identities=10% Similarity=0.178 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCcEEEEEecC--CCCHHHHHHHHHHhhCCCCCCeEEEeCC---eec---Cchhhhcc--cccCCCCEEE
Q 004801 17 TTIEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVLSEQQRLICRG---KVL---KDDQLLSA--YHVEDGHTLH 86 (730)
Q Consensus 17 ~tMqItVKtLdGKT~tLeVdp--sdTV~dLKekIeektGIPpeqQRLIFkG---KvL---kDdkTLsd--YGIqdGSTLh 86 (730)
-++.|+|.. .|....|.|+. +.|.++|..++...+++. ...|-|.. .++ .+..-=+. ...+.+..|+
T Consensus 13 ~~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k~~n~L~ 89 (101)
T 1wj6_A 13 PQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQ 89 (101)
T ss_dssp SCEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCSHHHHHHHHHHHHHHTSEEE
T ss_pred ccEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEecHHHHHHHHHHhccCCCEEE
Confidence 346677766 68888888865 889999999999999996 33444433 222 22222122 3346788999
Q ss_pred EeeecC
Q 004801 87 MVVRQP 92 (730)
Q Consensus 87 LVlRlp 92 (730)
|.+...
T Consensus 90 m~V~~~ 95 (101)
T 1wj6_A 90 MQVHEG 95 (101)
T ss_dssp EECCBC
T ss_pred EEEeec
Confidence 988664
Done!