BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004802
(729 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 49 IIAQVQPTVVSEERRKAVIDYV-QRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
I + PT RK ++ + Q +++ + ++ FGS K YLP D+DL
Sbjct: 248 FIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPE 307
Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL--VQNIVVDISFNQLG 164
+ D+ + + K A + Q+I A V ++K + + + VDISFNQ G
Sbjct: 308 HHYRGTKKDMFVLAHHLKKLKLAS----EVQVITTANVPIIKFVDPLTKVHVDISFNQPG 363
Query: 165 GLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFH 224
GL T C + V+ + K + +I+IK + + + G +S+YA+ LV+
Sbjct: 364 GLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRA-LNEVFLGGLSSYAIVCLVVSFLQ 419
Query: 225 LFHSSLNGPL-------AVLYKFLDYFSK-FDWDSYCISLNG 258
L G + +L +FL+ + K F +D+ I+++
Sbjct: 420 LHPRLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAVHN 461
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 55/301 (18%)
Query: 63 RKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVL 121
R+ V+ ++ ++++ + +V FGS YLP DIDL FG E + L
Sbjct: 11 RREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFG--KWERPPLQLLEQAL 68
Query: 122 EREDQNKAAEFVVKDAQLIRAEVKLVKCLVQN--IVVDISFNQLGGLSTLCFLEQVDRLI 179
+ + + V D +A V ++K Q + VDISFN G+ F++ +
Sbjct: 69 RKHNVAEPCSIKVLD----KATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKN---YM 121
Query: 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLA---- 235
K L I+++K + + + G IS+Y+L + + L H ++ A
Sbjct: 122 KKYSLLPYLILVLKQFLL-QRDLNEVFTGGISSYSLILMAISFLQL-HPRIDARRADENL 179
Query: 236 --VLYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVE 292
+L +F + + + F++ L +RI GG + E +K
Sbjct: 180 GMLLVEFFELYGRNFNY------LKTGIRI------------KEGGAYIAKEEIMKAMTS 221
Query: 293 QFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352
+ P L I DPL N++GRS S G +++ F Y L H +
Sbjct: 222 GYR--------------PSMLCIEDPLLPGNDVGRS-SYGAM-QVKQVFDYAYIVLSHAV 265
Query: 353 S 353
S
Sbjct: 266 S 266
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 55/301 (18%)
Query: 63 RKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVL 121
R+ V+ ++ ++++ + +V FGS YLP DIDL FG E + L
Sbjct: 11 RREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKW--ERPPLQLLEQAL 68
Query: 122 EREDQNKAAEFVVKDAQLIRAEVKLVKCLVQN--IVVDISFNQLGGLSTLCFLEQVDRLI 179
+ + + V D +A V ++K Q + VDISFN G+ F++ +
Sbjct: 69 RKHNVAEPCSIKVLD----KATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKN---YM 121
Query: 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLA---- 235
K L I+++K + + + G IS+Y+L + + L H ++ A
Sbjct: 122 KKYSLLPYLILVLKQFLL-QRDLNEVFTGGISSYSLILMAISFLQL-HPRIDARRADENL 179
Query: 236 --VLYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVE 292
+L +F + + + F++ L +RI GG + E +K
Sbjct: 180 GMLLVEFFELYGRNFNY------LKTGIRI------------KEGGAYIAKEEIMKAMTS 221
Query: 293 QFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352
+ P L I DPL N++GRS S G +++ F Y L H +
Sbjct: 222 GYR--------------PSMLCIEDPLLPGNDVGRS-SYGAM-QVKQVFDYAYIVLSHAV 265
Query: 353 S 353
S
Sbjct: 266 S 266
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 56/304 (18%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRNY-LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE 111
V P + + RK +++ +Q IR L E+ +GS+ + T L D+D++ V E
Sbjct: 31 VSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSMYIGTTLSISDVDVS-LKSPRVGE 89
Query: 112 ALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCF 171
V VL R+ + A+F A++ R + LV V I VD++F G C
Sbjct: 90 LEKRRVTMVL-RKYLDADADFH-SSARVPR--INLVD--VSGIGVDLTF----GNDKACR 139
Query: 172 LEQVDRLIGKDH-LFKRSIILIKAWCYYESRILGAHHGLISTYALETLVL-YIFHLFH-- 227
++ + ++H +F R ++L+K W + E + HHG I++ AL +++ ++ FH
Sbjct: 140 TAELQKAYNEEHPIFGRLLMLLKHWLF-ERDLENVHHGGIASCALSYMLIGWLEMRFHKK 198
Query: 228 ---SSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSS 284
S + A+L KF YF +W +Y + + P+ +P+ L
Sbjct: 199 GIDSEVQPIRALLQKFF-YFWGVEW-TYELFVLRPLTGQIVPK--------------LQK 242
Query: 285 EFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYG 344
+L E P L+I DP+ NN++G+ + + I++AF
Sbjct: 243 GWLNEV------------------QPNLLSIEDPIDRNNDIGKQSFQISM--IKAAFVAS 282
Query: 345 ARKL 348
A +L
Sbjct: 283 ANEL 286
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 121/317 (38%), Gaps = 67/317 (21%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGG----- 106
+ P E+ R V+ ++ +I+ + +V FGS YLP DIDL FG
Sbjct: 145 MSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 204
Query: 107 -LNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCL--VQNIVVDISFNQL 163
+EEAL + ED K L +A V ++K + VDISFN
Sbjct: 205 LWTLEEALRKHKVA---DEDSVKV---------LDKATVPIIKLTDSFTEVKVDISFNVQ 252
Query: 164 GGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF 223
G+ ++ K + ++L+ + + G I +Y+L + +
Sbjct: 253 NGVRAADLIKD----FTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFL 308
Query: 224 HLFHSSLNGPL------AVLYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENS 276
L H + + +L +F + + + F++ L +RI
Sbjct: 309 QL-HPREDACIPNTNYGVLLIEFFELYGRHFNY------LKTGIRI------------KD 349
Query: 277 GGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYR 336
GG + E K ++ + P L I DPL+ N++GRS S G +
Sbjct: 350 GGSYVAKDEVQKNMLD--------------GYRPSMLYIEDPLQPGNDVGRS-SYGAM-Q 393
Query: 337 IRSAFTYGARKLGHILS 353
++ AF Y L H +S
Sbjct: 394 VKQAFDYAYVVLSHAVS 410
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 122/317 (38%), Gaps = 67/317 (21%)
Query: 53 VQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGG----- 106
+ P E+ R V++ ++ +I+ + +V FGS YLP DIDL FG
Sbjct: 131 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 190
Query: 107 -LNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCL--VQNIVVDISFNQL 163
+EEAL + ED K L +A V ++K + VDISFN
Sbjct: 191 LWTLEEALRKHKVA---DEDSVKV---------LDKATVPIIKLTDSFTEVKVDISFNVQ 238
Query: 164 GGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF 223
G+ ++ K + ++L+ + + G I +Y+L + +
Sbjct: 239 NGVRAADLIKD----FTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFL 294
Query: 224 HLFHSSLNGPL------AVLYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENS 276
L H + + +L +F + + + F++ L +RI
Sbjct: 295 QL-HPREDACIPNTNYGVLLIEFFELYGRHFNY------LKTGIRI------------KD 335
Query: 277 GGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYR 336
GG + E K ++ + P L I DPL+ N++GRS S G +
Sbjct: 336 GGSYVAKDEVQKNMLD--------------GYRPSMLYIEDPLQPGNDVGRS-SYGAM-Q 379
Query: 337 IRSAFTYGARKLGHILS 353
++ AF Y L H +S
Sbjct: 380 VKQAFDYAYVVLSHAVS 396
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 47 QGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFG 105
+ +A + P+ E R I ++ ++ + ++ FGS YLP DID
Sbjct: 184 KDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTS 243
Query: 106 GLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLV--QNIVVDISFNQL 163
L +E+ N + +N A E V + +A V ++K + I +D+SF +
Sbjct: 244 ELGGKESRNNLYSLASHLKKKNLATEVEV----VAKARVPIIKFVEPHSGIHIDVSFERT 299
Query: 164 GGLSTLCFL-EQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYI 222
G+ + E +D G R ++LI + R+ H G + +++ LV
Sbjct: 300 NGIEAAKLIREWLDDTPG-----LRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSF 354
Query: 223 FHL 225
H+
Sbjct: 355 LHM 357
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 40/228 (17%)
Query: 59 SEERRKAVIDYVQRLIRNYL-----------------GCEVFPFGSVPLKTYLPDGDID- 100
+ ++R V+ QRL++ ++ G +VF FGS L Y P DID
Sbjct: 43 ATKKRVEVLTLFQRLVQEFVYTVSKSKNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDT 102
Query: 101 -------------LTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLV 147
+ F + + ++ V + EF LI A + +
Sbjct: 103 LVVVPKHVTRDDFFSVFADIIRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIP 162
Query: 148 KCLV------QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESR 201
+ + +N++ ++ L L+ +++ +L+ K +FK ++ IK W +
Sbjct: 163 RVPLDLTLDDKNLLKNLDEKDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWA-QQRA 221
Query: 202 ILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDW 249
+ G G A LV I L+ ++++ A++ KF + ++K++W
Sbjct: 222 VYGNIFGFPGGVAWAMLVARICQLYPNAVSS--AIVEKFFNIYTKWNW 267
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 116/292 (39%), Gaps = 53/292 (18%)
Query: 98 DIDLTAFGGLNVEEALAN---DVCSVLEREDQNKAA------EFVVKDAQ---LIRAEVK 145
D +L AFG L AL N D+C +++ Q+ E + + + L RA +
Sbjct: 82 DAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGFEGKFLQRARIP 141
Query: 146 LVKC-------LVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYY 198
++K + DI FN + L +L D K ++L+K W
Sbjct: 142 IIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKL---DARLKPMVLLVKHWAK- 197
Query: 199 ESRILGAHHGLISTYALETLVLY-IFHL-----FHSSLNGPLAVLYKFLDYFS-KFD--- 248
+I + G +S+Y +VLY + H+ F + L PL K +D F FD
Sbjct: 198 RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQ-EKIVDGFDVGFDDKL 256
Query: 249 --------WDSYCISLNGPVRISSL---PEVVVETPENSGGDLLLSSEFLKECVEQFSVP 297
+ S L+G R + P V T G +L + + ++
Sbjct: 257 EDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDG-------YLTKQEKGWTSA 309
Query: 298 SRGFDTNSRSFPPKH-LNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL 348
+ + + ++ L I DP + ++N+GR+VS YRIR F +R L
Sbjct: 310 TEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLL 361
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 21/206 (10%)
Query: 63 RKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVL 121
R ID ++R ++ + ++ FGS YLP DID N ++ N + L
Sbjct: 197 RNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGSDIDCVV-NSRNRDKEDRNYIYE-L 254
Query: 122 EREDQNKAAEFVVKDAQLIRAEVKLVKCL--VQNIVVDISFNQLGGLSTLCFLEQVDRLI 179
R +NK ++ +++ V ++K + + +D+SF + GL + + R
Sbjct: 255 ARHLKNKG--LAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREWLR-- 310
Query: 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH--------SSLN 231
D R ++LI + R+ H G + + + LV Y F H L+
Sbjct: 311 --DSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLV-YSFLNMHPRIKSNDIDVLD 367
Query: 232 GPLAVLYKFLDYFSK-FDWDSYCISL 256
+L F + + K F +D IS+
Sbjct: 368 NLGVLLIDFFELYGKNFGYDDVAISI 393
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 127/322 (39%), Gaps = 50/322 (15%)
Query: 55 PTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLT-AFGGLNVEEA 112
PT++ ++ R+ + ++ IR ++ G ++ FGS D+D+ GL E
Sbjct: 1014 PTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAEG 1073
Query: 113 LANDVCSVLEREDQNKAAEFVVKDAQL------IRAEVKLVKC--LVQNIVVDISFNQLG 164
L D +E + A + K + L A+V +VK L + VDIS
Sbjct: 1074 L--DCVRTIE-----ELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTL 1126
Query: 165 GLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFH 224
L L + + ++ + C I A G +S+YA +VLY
Sbjct: 1127 ALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMC----DIGDASRGSLSSYAYTLMVLYFLQ 1182
Query: 225 LFHSSLNGPLAVLYK-------FLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPEN-- 275
+ + L +YK F+D ++ + +D +I LP E +N
Sbjct: 1183 QRNPPVIPVLQEIYKGEKKPEIFVDGWNIYFFD----------QIDELPTYWSECGKNTE 1232
Query: 276 SGGDLLL------SSEF-LKECVEQFSVPSRGFDTN-SRSFPPKHLNIVDPLKENNNLGR 327
S G L L + EF KE V S+ + T + + K++ I DP N+NLG
Sbjct: 1233 SVGQLWLGLLRFYTEEFDFKEHV--ISIRRKSLLTTFKKQWTSKYIVIEDPFDLNHNLGA 1290
Query: 328 SVSKGNFYRIRSAFTYGARKLG 349
+S+ I AF G R G
Sbjct: 1291 GLSRKMTNFIMKAFINGRRVFG 1312
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 37/233 (15%)
Query: 44 EATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTA 103
E ++ ++Q ++ ++ ++ + N G ++F +GS L Y P DID
Sbjct: 45 EKRVKVLDELQQITTEFVKKVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLV 104
Query: 104 FGGLNV-EEALANDVCSVL-EREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISF- 160
+V + D+ +L ERE+ V A + A V ++K I +D+ F
Sbjct: 105 VVPKHVSRDNFFQDLEPMLREREE-------VTDLAAVPDAYVPIIKFKFLGISIDLIFA 157
Query: 161 ----------------NQLGGLSTLCFL--------EQVDRLIGKDHLFKRSIILIKAWC 196
N L G+ C L +Q+ +L+ +FK ++ IK W
Sbjct: 158 RLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWA 217
Query: 197 YYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDW 249
+ I G A +V I L+ ++++ ++ KF +++W
Sbjct: 218 QRRA-IYANVVGFPGGVAWAMMVARICQLYPNAVSS--VIVAKFFRILHQWNW 267
>sp|Q5IS45|NMDE1_PANTR Glutamate receptor ionotropic, NMDA 2A OS=Pan troglodytes GN=GRIN2A
PE=2 SV=1
Length = 1464
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 583 HPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWW 639
HP M + W ++ +F+ GY PR V + + G +E+H +SL H W
Sbjct: 335 HP-FMVNVTWDGKDLSFTEEGYQVHPRLVVIVLNKDREWEKVGKWENHTLSLRHAVW 390
>sp|Q12879|NMDE1_HUMAN Glutamate receptor ionotropic, NMDA 2A OS=Homo sapiens GN=GRIN2A
PE=1 SV=1
Length = 1464
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 583 HPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWW 639
HP M + W ++ +F+ GY PR V + + G +E+H +SL H W
Sbjct: 335 HP-FMVNVTWDGKDLSFTEEGYQVHPRLVVIVLNKDREWEKVGKWENHTLSLRHAVW 390
>sp|O60114|YG65_SCHPO Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15C4.05 PE=3 SV=1
Length = 1428
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 528 SEWKQQLNSGSAEK-NVTSGILP-THYKETGLILLNGQDENQLDVNHGASSPVESNHHPS 585
++W+QQL S SAEK V LP T ++ET +++ + +QL + G + +S P+
Sbjct: 610 NKWRQQLESESAEKFKVFRNQLPATMFRET---IIDAVNNSQLLIISGDTGCGKSTQIPA 666
Query: 586 LMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLS-DLSGDYESHQISLNHVWWWYEHA 644
+ + ST+ + Y PR + + AN +S +L G+ S + +H Y
Sbjct: 667 FL--LENSTKNGK-AVKIYVTEPRRISAISLANRVSQELGGNPPSAR---SHELVGYSVR 720
Query: 645 LNSSYSPMSP 654
L+S +P++P
Sbjct: 721 LDSKCTPLTP 730
>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens
GN=VPS13C PE=1 SV=1
Length = 3753
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 604 YHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSY------------SP 651
+ P+ P + + L Y+ HQIS +H W ++ ++ SP
Sbjct: 3119 WEVKPKQKWKPFSQKQIILLEQSYQKHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSP 3178
Query: 652 MSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEE 711
+ LS Q + QRSL R + + + +P +F + P+ P S ++
Sbjct: 3179 IKRDFLSGIQIEFKQSSHQRSLRAR---LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDS 3235
Query: 712 MPK 714
PK
Sbjct: 3236 EPK 3238
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 29/195 (14%)
Query: 78 LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLE-----REDQNKAA-- 130
+G ++F FGS L Y P DID +V ND V R + + A
Sbjct: 79 VGGKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSR---NDFFEVFYELLKGRSELEEIAPV 135
Query: 131 ----------EFVVKDAQLIRAEVKLVKCLV------QNIVVDISFNQLGGLSTLCFLEQ 174
EF LI A + + + +N++ +I L L+ ++
Sbjct: 136 PDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRVTDE 195
Query: 175 VDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPL 234
+ +L+ K +FK ++ IK W + + G G A LV I L+ ++++
Sbjct: 196 ILQLVPKPTVFKHALRCIKMWA-QQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSA-- 252
Query: 235 AVLYKFLDYFSKFDW 249
++ KF +S++ W
Sbjct: 253 VIVEKFFHIYSQWAW 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,936,471
Number of Sequences: 539616
Number of extensions: 12451934
Number of successful extensions: 29509
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 29479
Number of HSP's gapped (non-prelim): 67
length of query: 729
length of database: 191,569,459
effective HSP length: 125
effective length of query: 604
effective length of database: 124,117,459
effective search space: 74966945236
effective search space used: 74966945236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)