Query 004802
Match_columns 729
No_of_seqs 268 out of 1242
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nyb_A Poly(A) RNA polymerase 100.0 4.6E-50 1.6E-54 427.4 24.1 273 35-352 14-300 (323)
2 4e8f_A Poly(A) RNA polymerase 100.0 2.7E-49 9.1E-54 433.3 27.1 287 30-352 32-365 (405)
3 4fh3_A Poly(A) RNA polymerase 100.0 1.9E-49 6.6E-54 423.5 23.9 278 39-352 13-337 (349)
4 3hj4_A Minor editosome-associa 100.0 2.1E-47 7.2E-52 413.8 22.4 291 40-350 5-366 (384)
5 2ikf_A RNA uridylyl transferas 100.0 8.1E-48 2.8E-52 414.1 17.8 283 20-348 14-348 (353)
6 2b4v_A RNA editing complex pro 100.0 3.7E-44 1.3E-48 398.5 25.1 288 25-353 3-442 (468)
7 3pq1_A Poly(A) RNA polymerase; 100.0 1.5E-42 5E-47 384.4 26.3 241 42-353 134-440 (464)
8 2hhp_A Poly(A) polymerase; tem 100.0 1.5E-41 5.2E-46 382.3 30.2 269 42-353 25-340 (530)
9 1q79_A Poly(A) polymerase alph 100.0 1.6E-41 5.6E-46 380.9 28.2 270 42-354 38-354 (514)
10 1r89_A TRNA nucleotidyltransfe 99.6 2.1E-14 7.3E-19 158.3 26.2 241 42-352 3-253 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.5 7.7E-13 2.6E-17 141.8 22.2 250 44-338 9-320 (349)
12 4at7_A Interleukin enhancer-bi 97.5 0.023 7.9E-07 61.4 25.0 190 44-244 29-249 (364)
13 1no5_A Hypothetical protein HI 97.5 0.00021 7.1E-09 64.7 7.9 43 66-108 13-56 (114)
14 1wot_A Putative minimal nucleo 97.4 0.00033 1.1E-08 61.9 7.7 39 69-107 15-53 (98)
15 1ylq_A Putative nucleotidyltra 97.3 0.00032 1.1E-08 61.8 6.2 42 66-107 3-46 (96)
16 2rff_A Putative nucleotidyltra 96.5 0.0023 7.7E-08 58.1 4.7 46 62-107 11-61 (111)
17 4at7_B NF90, interleukin enhan 96.2 0.14 5E-06 55.6 17.4 72 51-122 21-135 (383)
18 1kny_A Kntase, kanamycin nucle 94.8 0.013 4.3E-07 60.1 2.9 43 65-107 14-59 (253)
19 4ebj_A Aminoglycoside nucleoti 94.6 0.025 8.5E-07 58.6 4.5 46 62-107 18-68 (272)
20 3jz0_A Lincosamide nucleotidyl 88.7 0.73 2.5E-05 48.4 7.2 47 61-107 22-69 (287)
21 2fmp_A DNA polymerase beta; nu 74.6 28 0.00095 37.0 12.8 119 67-203 159-292 (335)
22 2fcl_A Hypothetical protein TM 59.1 57 0.002 31.3 10.3 84 63-160 15-106 (169)
23 2bcq_A DNA polymerase lambda; 53.8 82 0.0028 33.4 11.4 120 66-203 155-286 (335)
24 2ihm_A POL MU, DNA polymerase 37.1 32 0.0011 37.0 5.0 56 67-123 163-220 (360)
25 1jms_A Terminal deoxynucleotid 32.8 56 0.0019 35.4 6.1 56 67-123 183-242 (381)
26 3er9_B Poly(A) polymerase cata 30.6 30 0.001 37.9 3.5 70 35-104 130-208 (479)
27 2pbe_A AAD6, aminoglycoside 6- 27.5 39 0.0013 35.2 3.7 43 65-107 8-53 (294)
No 1
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-50 Score=427.37 Aligned_cols=273 Identities=19% Similarity=0.338 Sum_probs=224.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCcc--h
Q 004802 35 GAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE--E 111 (729)
Q Consensus 35 ~~e~w~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~~--~ 111 (729)
..+.-..|++||.+|+++++||++|.++|++++++|+++++. ||+++|++|||+++|+++|+||||++|..+.... .
T Consensus 14 ~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~ 93 (323)
T 3nyb_A 14 QKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESR 93 (323)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHH
Confidence 356778899999999999999999999999999999999996 7999999999999999999999999999886532 2
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEee--CCeEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHH
Q 004802 112 ALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS 188 (729)
Q Consensus 112 ~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~--~gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~fr~L 188 (729)
..+..+.++|++. -.+.+|++| +||||||||++ .||+|||||++..|+.++.++ ..++..+|++|+|
T Consensus 94 ~~l~~l~~~L~~~-------~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li---~~~~~~~~~~r~l 163 (323)
T 3nyb_A 94 NNLYSLASHLKKK-------NLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI---REWLDDTPGLREL 163 (323)
T ss_dssp HHHHHHHHHHHHT-------TSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH---HHHHHSCTTHHHH
T ss_pred HHHHHHHHHHhhC-------CCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHH---HHHHHhhhhHHHH
Confidence 3556677777542 123467778 89999999997 499999999999999999987 4557789999999
Q ss_pred HHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCC------CCchH-HHHHHhhccc-ccccccceEEccCCc
Q 004802 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSL------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPV 260 (729)
Q Consensus 189 vlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl------~~pLg-LL~~FFeyYs-~FDw~~~~ISI~GPV 260 (729)
+++||+||+ +++|++++.||||||+|++||++|||++++.+ ..+|+ +|++||+||+ +|||++++|+|+...
T Consensus 164 v~~iK~wak-~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 164 VLIVKQFLH-ARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGY 242 (323)
T ss_dssp HHHHHHHHH-HTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSC
T ss_pred HHHHHHHHH-HcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCC
Confidence 999999998 89999999999999999999999999854211 13465 7899999999 999999999998210
Q ss_pred ccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHH
Q 004802 261 RISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSA 340 (729)
Q Consensus 261 ~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~a 340 (729)
+ ..+.++.++. + . .......||||||++++||+||+++ ++..||++
T Consensus 243 ~------------------~~~~k~~~~~----~-------~---~~~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~~ 288 (323)
T 3nyb_A 243 P------------------VYFPKSTWSA----I-------Q---PIKNPFSLAIQDPGDESNNISRGSF--NIRDIKKA 288 (323)
T ss_dssp E------------------EEEEGGGCGG----G-------C---SCSCSSSCCBEETTEEEEETTTTCT--THHHHHHH
T ss_pred c------------------ceeeHHhccc----c-------c---ccCCCceEEEeCCCCCCcccccchH--HHHHHHHH
Confidence 0 0111110000 0 0 0112457999999999999999986 69999999
Q ss_pred HHHHHHHHHhhh
Q 004802 341 FTYGARKLGHIL 352 (729)
Q Consensus 341 F~~Aa~~L~~il 352 (729)
|++|++.|.+.+
T Consensus 289 F~~A~~~L~~~~ 300 (323)
T 3nyb_A 289 FAGAFDLLTNRC 300 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 2
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=2.7e-49 Score=433.33 Aligned_cols=287 Identities=21% Similarity=0.322 Sum_probs=223.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCC
Q 004802 30 NQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (729)
Q Consensus 30 ~p~~i~~e~w~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~ 108 (729)
.++.+.++.|+++++++.+|+++++||++|.++|++++++|+++|+. ||+++|++|||+++|+++|+|||||+|..+..
T Consensus 32 ~~~~~~~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~ 111 (405)
T 4e8f_A 32 CSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSR 111 (405)
T ss_dssp ------CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC-
T ss_pred CccccCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCC
Confidence 45667789999999999999999999999999999999999999995 89999999999999999999999999998763
Q ss_pred c-chHHHHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEe-e--C----CeEEEEeeecCCcchhhHHHHHHHHHh
Q 004802 109 V-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL-V--Q----NIVVDISFNQLGGLSTLCFLEQVDRLI 179 (729)
Q Consensus 109 ~-~~~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~-~--~----gI~VDISfNn~~Gi~ns~fLe~v~~~i 179 (729)
. .++++.++.+.|++. ..+|+.| +||||||||+ + . ||+|||||||..|+.++.|++.| +
T Consensus 112 ~~~~~~l~~l~~~L~~~---------~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y---~ 179 (405)
T 4e8f_A 112 VQSDTIALQFYEELIAE---------GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSY---T 179 (405)
T ss_dssp --CTTHHHHHHHHHHHT---------TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHH---H
T ss_pred CCHHHHHHHHHHHHHhc---------CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHH---H
Confidence 2 234566677776541 1345556 9999999999 5 3 89999999999999999998655 5
Q ss_pred cCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHH-HhcCCCC----------------------------
Q 004802 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF-HLFHSSL---------------------------- 230 (729)
Q Consensus 180 ~kdp~fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fL-Q~~~psl---------------------------- 230 (729)
..+|++|+|+++||+||+ +++|++++.||||||+|++|||+|| |..+|.+
T Consensus 180 ~~~p~~r~Lv~~lK~wak-~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~ 258 (405)
T 4e8f_A 180 KLDARLKPMVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED 258 (405)
T ss_dssp HHCTTHHHHHHHHHHHHH-HTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGG
T ss_pred hhCHHHHHHHHHHHHHHH-HcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhh
Confidence 569999999999999998 8999999999999999999999999 6544321
Q ss_pred ------CCchH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCC
Q 004802 231 ------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFD 302 (729)
Q Consensus 231 ------~~pLg-LL~~FFeyYs-~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e 302 (729)
..+|+ ||++||+||+ +|||++++|||+.+ |+ +++|+...+. ... ...|..
T Consensus 259 ~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~-----------------g~--~~~K~~k~w~-~~~--~~~g~~ 316 (405)
T 4e8f_A 259 IPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP-----------------DG--YLTKQEKGWT-SAT--EHTGSA 316 (405)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSST-----------------TC--CCBHHHHTCC-C----------
T ss_pred hccccccccHHHHHHHHHHHHhcccCCCCcEEEEecC-----------------Cc--cccccccccc-ccc--cccccc
Confidence 12456 6799999999 89999999999832 11 2333211000 000 000000
Q ss_pred CCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhh
Q 004802 303 TNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (729)
Q Consensus 303 ~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~il 352 (729)
.. .......|||||||++++|+||+|+..++.+||++|++|++.|.+..
T Consensus 317 ~~-~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~ 365 (405)
T 4e8f_A 317 DQ-IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 365 (405)
T ss_dssp ------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cc-cccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 00124579999999999999999998899999999999999998864
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.9e-49 Score=423.47 Aligned_cols=278 Identities=20% Similarity=0.309 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCcch-HHHHH
Q 004802 39 WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE-ALAND 116 (729)
Q Consensus 39 w~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~~~-~l~~~ 116 (729)
...++..+.+++++++||++|.++|++++++|+++|+. ||+++|++|||+++|+++|+||||+||+.+..... .+...
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~ 92 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQ 92 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHH
Confidence 45677777888999999999999999999999999995 89999999999999999999999999998765433 33323
Q ss_pred HHHHHHHHhhccccccceEEEEEE-ecceeeEEEeeC-------CeEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHH
Q 004802 117 VCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ-------NIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS 188 (729)
Q Consensus 117 V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~~-------gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~fr~L 188 (729)
+...+.+ .. .+++.| +||||||||+++ ++.||||||+..|++++.+|+. ++..+|+||+|
T Consensus 93 ~~~~~~~------~~---~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~---~~~~~~~~r~l 160 (349)
T 4fh3_A 93 FYEELIA------EG---FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSS---YTKLDARLKPM 160 (349)
T ss_dssp HHHHHHH------TT---EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHH---HHHHCTTHHHH
T ss_pred HHHHHHh------hc---ccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHH---HhhcCHHHHHH
Confidence 3332222 11 244556 999999999973 7999999999999999999854 46679999999
Q ss_pred HHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcC-CCC----------------------------------CCc
Q 004802 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH-SSL----------------------------------NGP 233 (729)
Q Consensus 189 vlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~-psl----------------------------------~~p 233 (729)
+++||+||+ +++|++++.||||||+|++|||+|||+.. +.+ ..+
T Consensus 161 ~~~iK~wak-~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~s 239 (349)
T 4fh3_A 161 VLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSS 239 (349)
T ss_dssp HHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCC
T ss_pred HHHHHHHHH-HcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCccc
Confidence 999999998 88999999999999999999999999632 111 123
Q ss_pred hH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCCCCCCc
Q 004802 234 LA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPK 311 (729)
Q Consensus 234 Lg-LL~~FFeyYs-~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~~ 311 (729)
++ ||++||+||| +|||.+.+||++.+.. +++++...+.. ...............+
T Consensus 240 lg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~-------------------~~~k~~k~~~~----~~~~~~~~~~~~~~~~ 296 (349)
T 4fh3_A 240 LGSLLHGFFRFYAYKFEPREKVVTFRRPDG-------------------YLTKQEKGWTS----ATEHTGSADQIIKDRY 296 (349)
T ss_dssp HHHHHHHHHHHHHHTCCTTTBCBCSSSTTC-------------------CCBHHHHTCC-------------------CC
T ss_pred HHHHHHHHHHHhhhccCCCCceEEecCCCC-------------------ccchHHhcccc----cccccCcccccCCCCc
Confidence 55 7799999999 7999999999985411 22222111000 0000000001122346
Q ss_pred ceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhh
Q 004802 312 HLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (729)
Q Consensus 312 ~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~il 352 (729)
.|||||||+++||+||+|+..++.+||+||++|++.|.+..
T Consensus 297 ~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~ 337 (349)
T 4fh3_A 297 ILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 337 (349)
T ss_dssp SSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred eEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence 79999999999999999999999999999999999998644
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=2.1e-47 Score=413.77 Aligned_cols=291 Identities=19% Similarity=0.234 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCcc-----hHH
Q 004802 40 QRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE-----EAL 113 (729)
Q Consensus 40 ~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~~-----~~l 113 (729)
+++++||.+|+++|+||++|.++|.+++++|+++|+. ||+++|++|||+++|+++|+|||||||..+.... +..
T Consensus 5 ~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~ 84 (384)
T 3hj4_A 5 REFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERV 84 (384)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchh
Confidence 6789999999999999999999999999999999985 8999999999999999999999999999865311 111
Q ss_pred -HHHHHHHHHHHhhccccccceEEEEEEecceeeEEEeeC--CeEEEEeeecCCcchhhHHHHHHHHHhcCCc-hhHHHH
Q 004802 114 -ANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQVDRLIGKDH-LFKRSI 189 (729)
Q Consensus 114 -~~~V~~iL~~~~~n~~~~f~Vk~Vq~I~ARVPIIKf~~~--gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp-~fr~Lv 189 (729)
...+...++- ++......++.|.+++||||||||++. |+.|||||||..|+.++.||+.| ...+| ++|+|+
T Consensus 85 ~~~~~lrll~L--~k~~~~~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y---~~~~p~rlr~Lv 159 (384)
T 3hj4_A 85 DEQNNKRMTRF--GKEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAI---RQVFPDFYGAYI 159 (384)
T ss_dssp HHHHHHHHHHH--HHHHHHHTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHH---HHTSHHHHHHHH
T ss_pred hHHHHHHHHHH--HhhcccCCeeEEeecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHH---HhcCcHHHHHHH
Confidence 1111111110 011112346777778999999999985 99999999999999999998655 45544 699999
Q ss_pred HHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcC--CCCCC----------------------------------c
Q 004802 190 ILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH--SSLNG----------------------------------P 233 (729)
Q Consensus 190 lLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~--psl~~----------------------------------p 233 (729)
++||+||+ +++|++++.||||||+|++|||+|||+++ |.++. .
T Consensus 160 llvK~Wak-~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~s 238 (384)
T 3hj4_A 160 HLVKAWGK-AREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEK 238 (384)
T ss_dssp HHHHHHHH-HTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHH
T ss_pred HHHHHHHH-HcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCccc
Confidence 99999998 89999999999999999999999999853 22210 1
Q ss_pred hH-H----HHHHhhcccccccccceEEccCCcccCCCCcccccc--------------------CCCCCCCcccCHHHHH
Q 004802 234 LA-V----LYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVET--------------------PENSGGDLLLSSEFLK 288 (729)
Q Consensus 234 Lg-L----L~~FFeyYs~FDw~~~~ISI~GPV~lssLp~~~~e~--------------------p~~gg~~~ll~ke~lr 288 (729)
|| | |++||+||++|||++++|||+.|..+.+++..++.+ .+. | .+++.-..
T Consensus 239 LgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~---~~~~~~~~ 314 (384)
T 3hj4_A 239 LGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKED-G---PLDENDFS 314 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG-C---SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccC-C---CCCCCccc
Confidence 54 4 789999999999999999999998877766554321 111 1 11111111
Q ss_pred HHhhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHh
Q 004802 289 ECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGH 350 (729)
Q Consensus 289 ~~~~~fs~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~ 350 (729)
..+.. +.. ..-....+.||| |...+|+||.|+......||++|++|++.|+.
T Consensus 315 ~~~~~--------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (384)
T 3hj4_A 315 ASMQN--------ETT-QRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLID 366 (384)
T ss_dssp HHHHH--------HHH-TSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTT
T ss_pred cccCc--------ccc-ccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhc
Confidence 10000 000 011145689999 99999999999999999999999999999976
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=8.1e-48 Score=414.11 Aligned_cols=283 Identities=19% Similarity=0.249 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccc-cCCCCCCC
Q 004802 20 PSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVP-LKTYLPDG 97 (729)
Q Consensus 20 ~~~~~~~~~p~p~~i~~e~w~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~-tGL~LP~S 97 (729)
+.|....++|.+.. +.+++.++++...++.+|.++|++++++|+++|+. ||+++|++|||++ +|+++|+|
T Consensus 14 ~~~~~~~~~P~~~~--------l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~S 85 (353)
T 2ikf_A 14 LVPRGSHMPPSPAV--------VGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGS 85 (353)
T ss_dssp ---------CCHHH--------HHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTC
T ss_pred ceecccCCCCCHHH--------HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCc
Confidence 55545555665533 34555566667788999999999999999999995 8999999999997 99999999
Q ss_pred CceEEEecCCCcc----------------hHHHHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEeeC-CeEEEEe
Q 004802 98 DIDLTAFGGLNVE----------------EALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ-NIVVDIS 159 (729)
Q Consensus 98 DIDLvV~~~~~~~----------------~~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~~-gI~VDIS 159 (729)
|||++|+.+..+. .+++.++.++|++. . .+.+|+.| +||||||||++. +|+||||
T Consensus 86 DIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~-----~--~~~~v~~i~~ArVPIiK~~~~~~i~~Dis 158 (353)
T 2ikf_A 86 DVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQK-----H--LSWNVEEVRRTRVPVVRVKGGGAVDFDIT 158 (353)
T ss_dssp CEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHH-----C--TTSEEEEECSSSSCEEEEECSSSCEEEEE
T ss_pred ceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhc-----C--CCCceEEecccceeEEEEEcCCCcEEEEE
Confidence 9999998753210 22344455555431 1 12466666 999999999994 9999999
Q ss_pred eecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCC-CCCChHHHHHHHHHHHHhcC--CCC------
Q 004802 160 FNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHH-GLISTYALETLVLYIFHLFH--SSL------ 230 (729)
Q Consensus 160 fNn~~Gi~ns~fLe~v~~~i~kdp~fr~LvlLIK~Wak~er~Ln~a~~-GgLSSYaL~LMVI~fLQ~~~--psl------ 230 (729)
|++..|+.++++++.+ +..+|+||+|+++||+||+ +++|++++. ||||||+|++|||+|||+.. |.+
T Consensus 159 ~~n~~g~~~t~ll~~~---~~~~p~~r~l~~~iK~wa~-~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~ 234 (353)
T 2ikf_A 159 AYRRNGVRNSALLRAY---FEQNPPCRWLSMSIKRWSK-QTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTID 234 (353)
T ss_dssp ESCCHHHHHHHHHHHH---HHHSTTHHHHHHHHHHHHH-HTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCC
T ss_pred ecCccHHHHHHHHHHH---HHhCccHHHHHHHHHHHHH-HcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccC
Confidence 9999999999998554 5669999999999999998 899999999 99999999999999998742 211
Q ss_pred -------------------CCchH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHH
Q 004802 231 -------------------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKE 289 (729)
Q Consensus 231 -------------------~~pLg-LL~~FFeyYs-~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~ 289 (729)
..+++ +|++||+||+ +|||++++|||+.+. ++.++..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--------------------~~~k~~~~w 294 (353)
T 2ikf_A 235 VSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPG--------------------ITTKEELDW 294 (353)
T ss_dssp GGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSS--------------------CEEHHHHTC
T ss_pred hhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCc--------------------ceechhhcc
Confidence 11244 7899999999 899999999997431 222222111
Q ss_pred Hh--hhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHH
Q 004802 290 CV--EQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL 348 (729)
Q Consensus 290 ~~--~~fs~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L 348 (729)
.. ..+ +..+ .......|||||||+++||+||+|+..++.+||++|++|++++
T Consensus 295 ~~~~~~~--~~~~-----~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 295 TKSAEDF--ARMN-----GEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SHHHHTT--CEET-----TEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccccc--cccc-----CCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 000 0000 0123467999999999999999999989999999999999875
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=3.7e-44 Score=398.49 Aligned_cols=288 Identities=17% Similarity=0.226 Sum_probs=216.3
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeecc-ccCCCCCCCCceEE
Q 004802 25 SSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSV-PLKTYLPDGDIDLT 102 (729)
Q Consensus 25 ~~~~p~p~~i~~e~w~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~-~tGL~LP~SDIDLv 102 (729)
.+.++....-..+.|..+...|.+......+++++.+.|..++++|+.+|+. ||+++|++|||+ .+|+++|+||||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~ 82 (468)
T 2b4v_A 3 LSLPSTKLNPSPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLA 82 (468)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEE
T ss_pred CCCCCccCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEE
Confidence 3456666777889999999999999888899999999999999999999996 899999999999 69999999999999
Q ss_pred EecCCCcchH---H--HHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEe----e---------------------
Q 004802 103 AFGGLNVEEA---L--ANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL----V--------------------- 151 (729)
Q Consensus 103 V~~~~~~~~~---l--~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~----~--------------------- 151 (729)
++........ . ..+|.++|++.. ..+.+.+|+.| +||||||||+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~ 158 (468)
T 2b4v_A 83 CMFDDPYPSHEVQAKRTDKLRTVIKRYV----PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTA 158 (468)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHHHTTS----CHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEE
T ss_pred EecCCCCccchhhHHHHHHHHHHHHHhc----cccccceeEeccCCCcceEEEEeccccccccccccccccccccccccc
Confidence 9987432111 1 123556665420 12223567778 9999999997 1
Q ss_pred --------------------------------------------------------------------------------
Q 004802 152 -------------------------------------------------------------------------------- 151 (729)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (729)
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf 238 (468)
T 2b4v_A 159 LLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRF 238 (468)
T ss_dssp EEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTS
T ss_pred cccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccc
Confidence
Q ss_pred ----CCeEEEEeeecCCcchhhHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhc
Q 004802 152 ----QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHL-FKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLF 226 (729)
Q Consensus 152 ----~gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~-fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~ 226 (729)
.||+|||||| ..|+.|+.||+.| +..+|+ +|+|+++||+||| +++|++++.||||||+|++|||+|||+.
T Consensus 239 ~~~~~gi~~DISfn-~~gi~nS~ll~~y---~~~dpr~~r~Lvl~vK~Wak-~r~Ln~~~~G~LsSYal~lMVI~fLQ~~ 313 (468)
T 2b4v_A 239 VPEMFMYRWDISFV-GYGVKNSYLIRHY---LHNGPVAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFIYYLLVT 313 (468)
T ss_dssp CCGGGSSCEEEESC-SHHHHHHHHHHHH---HHHSCTTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHHHHHHHT
T ss_pred cccccceEEEEecc-hhHHHHHHHHHHH---HhhChHHHHHHHHHHHHHHH-HcCCCCccCCCccHHHHHHHHHHHHHhc
Confidence 1578999998 9999999998655 556999 9999999999998 8999999999999999999999999975
Q ss_pred C--CCCC------------------------CchH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCC
Q 004802 227 H--SSLN------------------------GPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGG 278 (729)
Q Consensus 227 ~--psl~------------------------~pLg-LL~~FFeyYs-~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~ 278 (729)
. |.+. .+|+ ||++||+||+ +|||++.+|||+.+.
T Consensus 314 ~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~------------------ 375 (468)
T 2b4v_A 314 RQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNR------------------ 375 (468)
T ss_dssp TSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSS------------------
T ss_pred CcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCc------------------
Confidence 3 1110 1355 7799999999 899999999998321
Q ss_pred CcccCHHHHHHHhhhccCCCCCCCC--CCCCCCCcceEEeCCCCC----CCCcccCcCHHHHHHHHHHHHHHHHHHHhhh
Q 004802 279 DLLLSSEFLKECVEQFSVPSRGFDT--NSRSFPPKHLNIVDPLKE----NNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (729)
Q Consensus 279 ~~ll~ke~lr~~~~~fs~~~rg~e~--~~~~f~~~~L~IeDPfdp----snNlGRSVs~~~~~rIr~aF~~Aa~~L~~il 352 (729)
++.++.. +|.. +...-....|||||||++ ++|+||+|+..++.+|+++|++|++.|.+..
T Consensus 376 --~~~K~~~------------~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 376 --RSYRSDI------------GWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp --CEEHHHH------------TCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --ceecccc------------cccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 2223211 1110 000011236999999999 9999999998889999999999999998765
Q ss_pred c
Q 004802 353 S 353 (729)
Q Consensus 353 ~ 353 (729)
.
T Consensus 442 ~ 442 (468)
T 2b4v_A 442 P 442 (468)
T ss_dssp T
T ss_pred c
Confidence 3
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=384.38 Aligned_cols=241 Identities=17% Similarity=0.198 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCcc----------
Q 004802 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE---------- 110 (729)
Q Consensus 42 lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~~---------- 110 (729)
++++|.+|+++++||++|.++|..++++|+++|+. ||+++|++|||++|||++|+|||||||..+....
T Consensus 134 l~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~ 213 (464)
T 3pq1_A 134 IDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNF 213 (464)
T ss_dssp HHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccch
Confidence 79999999999999999999999999999999995 9999999999999999999999999997643100
Q ss_pred -----------hHH-HHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEeeC--CeEEEEeeecCCcchhhHHHHHH
Q 004802 111 -----------EAL-ANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQV 175 (729)
Q Consensus 111 -----------~~l-~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~~--gI~VDISfNn~~Gi~ns~fLe~v 175 (729)
+.. .+.+...+.+..++. ...+.+|+.| +||||||||++. ||.|||||||..|+.++.||+
T Consensus 214 ~le~~~k~l~seR~~~~~iL~~la~~L~~~--~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~-- 289 (464)
T 3pq1_A 214 LMEFQVKNVPSERIATQKILSVLGECLDHF--GPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLY-- 289 (464)
T ss_dssp --EECCCCCSCHHHHHHHHHHHHHHHHHHS--STTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHH--
T ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHhc--CCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHH--
Confidence 111 112222222211111 1134677777 999999999996 999999999999999999984
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCC-CChHHHHHHHHHHHHhcCCCCC-----------------------
Q 004802 176 DRLIGKDHLFKRSIILIKAWCYYESRILGAHHGL-ISTYALETLVLYIFHLFHSSLN----------------------- 231 (729)
Q Consensus 176 ~~~i~kdp~fr~LvlLIK~Wak~er~Ln~a~~Gg-LSSYaL~LMVI~fLQ~~~psl~----------------------- 231 (729)
.++..+|++|+|+++||+||+ +++|++++.|| ||||+|++|||+|||++.|.+.
T Consensus 290 -~y~~~dprlr~Lvl~vK~Wak-~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~ 367 (464)
T 3pq1_A 290 -IYGALDSRVRALVFSVRCWAR-AHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNC 367 (464)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHH-HTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC----------
T ss_pred -HHHHhCccHHHHHHHHHHHHH-HhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccc
Confidence 456789999999999999998 89999999998 9999999999999998753220
Q ss_pred ---------------CchH-HHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHhhhcc
Q 004802 232 ---------------GPLA-VLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFS 295 (729)
Q Consensus 232 ---------------~pLg-LL~~FFeyYs~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs 295 (729)
..++ ||++||+||++|||++++|||
T Consensus 368 ~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIsI--------------------------------------- 408 (464)
T 3pq1_A 368 TFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXXX--------------------------------------- 408 (464)
T ss_dssp -----------CCCCCCHHHHHHHHHHHGGGCCCCCCCCCC---------------------------------------
T ss_pred cccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCccccccc---------------------------------------
Confidence 1234 679999999999998766643
Q ss_pred CCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 004802 296 VPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (729)
Q Consensus 296 ~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~il~ 353 (729)
..|++|+|+...+.+++.+++.|+..|.+-..
T Consensus 409 --------------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~ 440 (464)
T 3pq1_A 409 --------------------------XXXXXXXVSQSQLQKFVDLARESAWILQQEDT 440 (464)
T ss_dssp --------------------------C-------CHHHHHHHHHHHHHHHHHHHCC--
T ss_pred --------------------------ccccccccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 46899999999999999999999999875443
No 8
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.5e-41 Score=382.35 Aligned_cols=269 Identities=19% Similarity=0.287 Sum_probs=211.9
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhc-----------------CCCceEeeccccCCCCCCCCceEE
Q 004802 42 AEEATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNYL-----------------GCEVFPFGSVPLKTYLPDGDIDLT 102 (729)
Q Consensus 42 lE~ei~efv~~--I~PT~eE~~~R~~Vv~~Lq~iI~~~p-----------------~a~V~~FGS~~tGL~LP~SDIDLv 102 (729)
...++.++++. +.||+||.++|++|+++|+++|+.|+ +++|++|||+++|+++|+||||++
T Consensus 25 ~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID~~ 104 (530)
T 2hhp_A 25 LNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTL 104 (530)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEEE
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCceeEE
Confidence 34445555544 89999999999999999999999874 699999999999999999999999
Q ss_pred EecCCCc-chHHHHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEeeCCeEEEEeeecCCc--------c------
Q 004802 103 AFGGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGG--------L------ 166 (729)
Q Consensus 103 V~~~~~~-~~~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~~gI~VDISfNn~~G--------i------ 166 (729)
++.+... .++++..+.++|++ ...+++|+.| +|+||||||+..||+|||+|++..+ +
T Consensus 105 v~~p~~~~~~dff~~l~~~L~~-------~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~~l~l~~~~~L 177 (530)
T 2hhp_A 105 VVVPKHVTREDFFTVFDSLLRE-------RKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLL 177 (530)
T ss_dssp EEECTTCCHHHHHHHHHHHHHT-------CTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCTTCCSCCGGGG
T ss_pred EecCCcCCHHHHHHHHHHHHhc-------CCCCceEEEecCCcccEEEEEECCEeeEEEEeccccccCCcccCCCchhhh
Confidence 9998754 34667777777754 2246889999 8999999999999999999987631 1
Q ss_pred -----------hhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCCCchH
Q 004802 167 -----------STLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLA 235 (729)
Q Consensus 167 -----------~ns~fLe~v~~~i~kdp~fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl~~pLg 235 (729)
......+.+.+++...+.||.++++||+||| +|+|++++.|+||||+|++||+++||+++. ..+..
T Consensus 178 ~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak-~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~--~s~~~ 254 (530)
T 2hhp_A 178 RNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQ-RRAVYANIFGFPGGVAWAMLVARICQLYPN--ACSAV 254 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHSTT--CCHHH
T ss_pred hccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCcccccCCcHHHHHHHHHHHHhcCCC--CCHHH
Confidence 0112234567788888999999999999998 899999999999999999999999998543 23456
Q ss_pred HHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCC-CCCCCcceE
Q 004802 236 VLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNS-RSFPPKHLN 314 (729)
Q Consensus 236 LL~~FFeyYs~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~-~~f~~~~L~ 314 (729)
+|.+||+||++|||.+ .|.+..+ + +|. +- .+.|.... .......|+
T Consensus 255 LL~~FF~~y~~~dw~~-pV~l~~~--------------~-~g~-~~----------------~~~w~p~~~~~d~~~~m~ 301 (530)
T 2hhp_A 255 ILNRFFIILSEWNWPQ-PVILKPI--------------E-DGP-LQ----------------VRVWNPKIYAQDRSHRMP 301 (530)
T ss_dssp HHHHHHHHHHHCCTTS-CEESSCC--------------C-CCS-SC----------------SCCCCTTTCHHHHTCSSC
T ss_pred HHHHHHHHHhcCCCCC-ceEeccc--------------C-CCC-cc----------------ccccCcccCCCCCcccee
Confidence 8899999999999985 5554311 0 110 00 01121000 000135799
Q ss_pred EeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 004802 315 IVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (729)
Q Consensus 315 IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~il~ 353 (729)
|+||++|.+|++++|++.++.+|++||++|++.|.+++.
T Consensus 302 Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~ 340 (530)
T 2hhp_A 302 VITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFS 340 (530)
T ss_dssp EECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998765
No 9
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.6e-41 Score=380.89 Aligned_cols=270 Identities=21% Similarity=0.279 Sum_probs=211.3
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh-----------------cCCCceEeeccccCCCCCCCCceEE
Q 004802 42 AEEATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNY-----------------LGCEVFPFGSVPLKTYLPDGDIDLT 102 (729)
Q Consensus 42 lE~ei~efv~~--I~PT~eE~~~R~~Vv~~Lq~iI~~~-----------------p~a~V~~FGS~~tGL~LP~SDIDLv 102 (729)
...++.++++. +.||+||.++|++|+++|+++|+.| ++++|++|||+++|+++|+||||++
T Consensus 38 ~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~ 117 (514)
T 1q79_A 38 LTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDAL 117 (514)
T ss_dssp HHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEE
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCceeEE
Confidence 33445555543 8999999999999999999999976 3699999999999999999999999
Q ss_pred EecCCCc-chHHHHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEeeCCeEEEEeeecCCcch-------------
Q 004802 103 AFGGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGGLS------------- 167 (729)
Q Consensus 103 V~~~~~~-~~~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~~gI~VDISfNn~~Gi~------------- 167 (729)
++.+... .++++..+.++|++ ...+++|+.| +|+||||||++.||+|||+|++..+..
T Consensus 118 ~v~p~~~~~~dff~~l~~~L~~-------~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~~p~~l~l~~~~~L 190 (514)
T 1q79_A 118 CVAPRHVDRSDFFTSFYDKLKL-------QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLL 190 (514)
T ss_dssp EEECTTSCHHHHTTHHHHHHHT-------CTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCTTCCTTCGGGG
T ss_pred EecCCcCCHHHHHHHHHHHHhc-------CccCceEEEecCCcccEEEEEECCeeEEEEEecCCcccCcccccCCchhhh
Confidence 9998765 35666777777764 1246889999 899999999999999999999854211
Q ss_pred ------------hhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCCCchH
Q 004802 168 ------------TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLA 235 (729)
Q Consensus 168 ------------ns~fLe~v~~~i~kdp~fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl~~pLg 235 (729)
.....+.+.+++..++.||.++++||+||| +|+|++++.||||||+|++||+++||+++. ..+..
T Consensus 191 ~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak-~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~--~s~~~ 267 (514)
T 1q79_A 191 KNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAK-RHNIYSNILGFLGGVSWAMLVARTCQLYPN--AIAST 267 (514)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCBCTTTTSBCHHHHHHHHHHHHHHSTT--CCHHH
T ss_pred cccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCccccCCccHHHHHHHHHHHHHhCCC--CCHHH
Confidence 112234556777788999999999999998 899999999999999999999999998643 23455
Q ss_pred HHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCC-CCCCcceE
Q 004802 236 VLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR-SFPPKHLN 314 (729)
Q Consensus 236 LL~~FFeyYs~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~-~f~~~~L~ 314 (729)
+|.+||+||++|||.+ .|.+..+ +. |. + ..+.|..... ..+.+.|+
T Consensus 268 LL~~FF~~y~~~dw~~-pV~l~~~--------------~~-~~-l----------------~~~~w~p~~~~~dr~~~m~ 314 (514)
T 1q79_A 268 LVHKFFLVFSKWEWPN-PVLLKQP--------------EE-CN-L----------------NLPVWDPRVNPSDRYHLMP 314 (514)
T ss_dssp HHHHHHHHHHSCCTTS-CBCSSCC--------------CC-CS-S----------------CCCCCCTTTCGGGGGCSSC
T ss_pred HHHHHHHHHhcCCCCC-CeEeccc--------------CC-CC-C----------------CCcccCCccCCcCccccee
Confidence 8899999999999986 3323211 01 10 0 0012211100 01134699
Q ss_pred EeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhhcC
Q 004802 315 IVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQ 354 (729)
Q Consensus 315 IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~il~~ 354 (729)
|+||++|.+|+|++|++.++.+|++||++|++.|.+++..
T Consensus 315 IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~ 354 (514)
T 1q79_A 315 IITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLS 354 (514)
T ss_dssp BBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987753
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.65 E-value=2.1e-14 Score=158.29 Aligned_cols=241 Identities=18% Similarity=0.186 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEeeccccCCCCCC-CCceEEEecCCCcc-hHHHHHHHH
Q 004802 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPD-GDIDLTAFGGLNVE-EALANDVCS 119 (729)
Q Consensus 42 lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~~p~a~V~~FGS~~tGL~LP~-SDIDLvV~~~~~~~-~~l~~~V~~ 119 (729)
+|+.+++|+++|.|+++|.+.-..+++.|...|+. .++++...||++.||+|++ |||||+|..+.... +++...-..
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e~l~~~~l~ 81 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CCCeEEEeccccCCCcCCCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56778899999999999999999999999999988 5689999999999999994 99999999986543 222222122
Q ss_pred HHHHHhhccccccceEEEEEEecceeeEEEeeCCeEEEEe--eecCCc--chh-hHHHHHHHHHhcCCch-hHHHHHHHH
Q 004802 120 VLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDIS--FNQLGG--LST-LCFLEQVDRLIGKDHL-FKRSIILIK 193 (729)
Q Consensus 120 iL~~~~~n~~~~f~Vk~Vq~I~ARVPIIKf~~~gI~VDIS--fNn~~G--i~n-s~fLe~v~~~i~kdp~-fr~LvlLIK 193 (729)
+++... .. ...-.|..|-|.....|++|||. +....| +.+ .+....-..++.+... ++.+|++||
T Consensus 82 ~~~e~l----~~-----~~~~ya~hpyV~~~f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK 152 (437)
T 1r89_A 82 IGKAVL----DS-----YEIRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLK 152 (437)
T ss_dssp HHHHHS----SS-----EEEEESSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHH----HH-----hhhhccCCceEEEEecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHHH
Confidence 232211 11 11226888999888899999995 433322 322 2222222345544222 889999999
Q ss_pred HHHHHhhCccCC--CCCCCChHHHHHHHHHHHHhcCCCCCCchHHHHHHhhcccccccccceEEccCCcccCCCCccccc
Q 004802 194 AWCYYESRILGA--HHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVE 271 (729)
Q Consensus 194 ~Wak~er~Ln~a--~~GgLSSYaL~LMVI~fLQ~~~psl~~pLgLL~~FFeyYs~FDw~~~~ISI~GPV~lssLp~~~~e 271 (729)
+|+| ..+++++ ..+|++||++.||+++| .++ ..+|..+. +|.. ++.|.
T Consensus 153 ~f~k-~~~~ygse~k~~gfSsYllELLv~~y-----G~f---~~vl~~~~------~w~~-~~~Id-------------- 202 (437)
T 1r89_A 153 GFLK-ANGIYGAEYKVRGFSGYLCELLIVFY-----GSF---LETVKNAR------RWTR-RTVID-------------- 202 (437)
T ss_dssp HHHH-HTTCBCCSTTTCCBCHHHHHHHHHHH-----SSH---HHHHHHHT------TCCT-TEEEE--------------
T ss_pred HHHH-hCCcCCCcccCCCCCHHHHHHHHHHH-----cCH---HHHHHHHH------HhCC-CeEEe--------------
Confidence 9998 7788865 67899999999999993 111 12343333 3332 22221
Q ss_pred cCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhh
Q 004802 272 TPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHI 351 (729)
Q Consensus 272 ~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~L~~i 351 (729)
+ + + +. ..| ..+|.|.||.+|+||+|++++..++.++..+-+...+.-+..
T Consensus 203 ----------~--~--------~-----~~----~~~-~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~ps~~ 252 (437)
T 1r89_A 203 ----------V--A--------K-----GE----VRK-GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFMEAPSLG 252 (437)
T ss_dssp ----------G--G--------G-----TE----EEE-CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHHSCCGG
T ss_pred ----------c--C--------C-----Cc----ccC-CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHhCccHH
Confidence 0 0 0 00 011 456899999999999999999888877776655444433333
Q ss_pred h
Q 004802 352 L 352 (729)
Q Consensus 352 l 352 (729)
+
T Consensus 253 ~ 253 (437)
T 1r89_A 253 F 253 (437)
T ss_dssp G
T ss_pred h
Confidence 3
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.51 E-value=7.7e-13 Score=141.84 Aligned_cols=250 Identities=22% Similarity=0.324 Sum_probs=140.0
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhh-c-C-------CCceEeeccccCCCCC-CCCceEEEecCCCc--c
Q 004802 44 EATQGII-AQVQPTVVSEERRKAVIDYVQRLIRNY-L-G-------CEVFPFGSVPLKTYLP-DGDIDLTAFGGLNV--E 110 (729)
Q Consensus 44 ~ei~efv-~~I~PT~eE~~~R~~Vv~~Lq~iI~~~-p-~-------a~V~~FGS~~tGL~LP-~SDIDLvV~~~~~~--~ 110 (729)
.++++|+ +.|+|+.++...-..+++.|...|+.. . + .++...||++.||+++ .|||||+|+.+... +
T Consensus 9 ~~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~ 88 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE 88 (349)
T ss_dssp GGHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh
Confidence 3567788 899999999988888899999999852 1 1 2677889999999999 59999999987531 1
Q ss_pred h------HHHHHHHHHHHHHhhccccccceEEEEEE--ecceee-EEEee------CCeEEEEe--eecCCcc-------
Q 004802 111 E------ALANDVCSVLEREDQNKAAEFVVKDAQLI--RAEVKL-VKCLV------QNIVVDIS--FNQLGGL------- 166 (729)
Q Consensus 111 ~------~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I--~ARVPI-IKf~~------~gI~VDIS--fNn~~Gi------- 166 (729)
+ .+++.|.+.|+...+. ..+.+ .+++. .-+.|- |.+.. .++.|||. |++...+
T Consensus 89 ~~~~~~~~~l~~i~~~L~~~~~~--~~~~~-~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~ 165 (349)
T 1px5_A 89 DQLRRRGEFIQEIRRQLEACQRE--QKFKV-TFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPN 165 (349)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH--CCCSS-EEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCC
T ss_pred hHHhhHHHHHHHHHHHHHHhhhh--hcccc-ceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCC
Confidence 1 2344555556543221 11211 12222 123552 45543 37999975 3432111
Q ss_pred --------h-----------hhHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhc
Q 004802 167 --------S-----------TLCFLEQVDRLI-GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLF 226 (729)
Q Consensus 167 --------~-----------ns~fLe~v~~~i-~kdp~fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~ 226 (729)
. ..++.+.-.+++ .+...+|.+|++||+|.+ .... +....+++||+|.+|+++.+...
T Consensus 166 ~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~-~~~~-~~~~~~~ssy~lELL~~~a~e~~ 243 (349)
T 1px5_A 166 PEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQ-TCKK-THGNKLPPQYALELLTVYAWEQG 243 (349)
T ss_dssp HHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHHT-TCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHH-Hhhh-cccCCCCChHHHHHHHHHHHHhC
Confidence 0 112211111223 234568999999999986 3322 23357899999999999988764
Q ss_pred CCCCCCc-hHHHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCH----HHHHHHhhhccCCCCCC
Q 004802 227 HSSLNGP-LAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSS----EFLKECVEQFSVPSRGF 301 (729)
Q Consensus 227 ~psl~~p-LgLL~~FFeyYs~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~k----e~lr~~~~~fs~~~rg~ 301 (729)
...-.-+ .+-+..+|++-.+ |...+|-... + +-+.. .|++..
T Consensus 244 ~~~~~~~~~~~f~~vle~l~~--~~~~~i~w~~----------------~----y~~~~~~~~~fl~~~----------- 290 (349)
T 1px5_A 244 SRKTDFSTAQGFQTVLELVLK--HQKLCIFWEA----------------Y----YDFTNPVVGRCMLQQ----------- 290 (349)
T ss_dssp TCCSSCCHHHHHHHHHHHHHT--GGGCEECCCS----------------S----CCSSSHHHHHHHHHH-----------
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCccceeeec----------------c----ccccchhHHhhhhhh-----------
Confidence 3221112 3456667766654 4444543220 0 00111 222211
Q ss_pred CCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHH
Q 004802 302 DTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIR 338 (729)
Q Consensus 302 e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr 338 (729)
+......|.||.+|+||||.+ +...+..+.
T Consensus 291 ------l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~ 320 (349)
T 1px5_A 291 ------LKKPRPVILDPADPTGNVGGG-DTHSWQRLA 320 (349)
T ss_dssp ------HTSSSCEEBCTTCTTCBTTCS-CHHHHHHHH
T ss_pred ------hcCCCCeeeCCCCCCCcccCC-chhhHHHHH
Confidence 112336899999999999988 655566554
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.52 E-value=0.023 Score=61.38 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=106.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh---hcCC------CceEeeccccCCCCC-CCCceEEEecCCCcchH-
Q 004802 44 EATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN---YLGC------EVFPFGSVPLKTYLP-DGDIDLTAFGGLNVEEA- 112 (729)
Q Consensus 44 ~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~---~p~a------~V~~FGS~~tGL~LP-~SDIDLvV~~~~~~~~~- 112 (729)
+.|.+=-+.|.|+++|...-..++.+|+++|.. .|+. .|...||++.|+++. +-|+|+||+....-...
T Consensus 29 ~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lPT~e~ 108 (364)
T 4at7_A 29 EALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEA 108 (364)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCCBHHH
T ss_pred HHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCCCHHH
Confidence 333333457899999999999999999999985 2443 588899999999999 58899999886532222
Q ss_pred ---HHHHHHHHHHHHhhccccccc--eE--EEEEE--ecceeeEEEee--------CCeEEEE--eeecCCcchhhHHHH
Q 004802 113 ---LANDVCSVLEREDQNKAAEFV--VK--DAQLI--RAEVKLVKCLV--------QNIVVDI--SFNQLGGLSTLCFLE 173 (729)
Q Consensus 113 ---l~~~V~~iL~~~~~n~~~~f~--Vk--~Vq~I--~ARVPIIKf~~--------~gI~VDI--SfNn~~Gi~ns~fLe 173 (729)
+.++|...|.... ...... +. .+.+. .+.|-|+--.. .....|. +.....+++.+++.
T Consensus 109 v~~L~~kV~e~L~~q~--~~e~~~~~~~e~~~~I~~~~~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhAkWf- 185 (364)
T 4at7_A 109 VAALGNKVVESLRAQD--PSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWF- 185 (364)
T ss_dssp HHHHHHHHHHHHHHHC--TTSCCEEEEETTEEEEECSSCEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhc--cccceeeccCcceEEEecCCCcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhhHHH-
Confidence 3455555554321 101010 00 11111 12222221110 0122221 11222233333332
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCchHHHHHHhhcc
Q 004802 174 QVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSL-NGPLAVLYKFLDYF 244 (729)
Q Consensus 174 ~v~~~i~kdp~fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl-~~pLgLL~~FFeyY 244 (729)
.... .+..++.+++++|..++ |. ..-+.|+.|+|.||+.+-+-..+.+- .++-..|.++|+.-
T Consensus 186 --q~na-~~s~v~~lIRIlkDlc~--R~---~~w~pL~~waLELL~~~Ai~s~~~~~~l~~~~afRRVLElL 249 (364)
T 4at7_A 186 --EENA-SQSTVKVLIRLLKDLRI--RF---PGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQIL 249 (364)
T ss_dssp --HHHC-CCHHHHHHHHHHHHHHH--HC---GGGTTCCHHHHHHHHHHHHHSSTTSSCCCHHHHHHHHHHHH
T ss_pred --Hhhc-cccccceeehhhHHHHH--hc---CCcCCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 2222 24556789999999875 22 12267999999999999776422110 11223566666654
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.51 E-value=0.00021 Score=64.74 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhc-CCCceEeeccccCCCCCCCCceEEEecCCC
Q 004802 66 VIDYVQRLIRNYL-GCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (729)
Q Consensus 66 Vv~~Lq~iI~~~p-~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~ 108 (729)
.++.|.+++++.+ ..+|.+|||++.|-+.++|||||+|+....
T Consensus 13 ~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 13 ELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEP 56 (114)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSC
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCC
Confidence 4556677777654 578999999999999999999999998653
No 14
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.41 E-value=0.00033 Score=61.93 Aligned_cols=39 Identities=28% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCceEeeccccCCCCCCCCceEEEecCC
Q 004802 69 YVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (729)
Q Consensus 69 ~Lq~iI~~~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~ 107 (729)
.++.+++++.-..+.+|||++.|.+.++|||||+|....
T Consensus 15 ~i~~l~~~~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 15 AVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 344444455557899999999999999999999998754
No 15
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.30 E-value=0.00032 Score=61.75 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=35.3
Q ss_pred HHHHHHHHHHh-hcCCCceEeeccccCCCCCC-CCceEEEecCC
Q 004802 66 VIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPD-GDIDLTAFGGL 107 (729)
Q Consensus 66 Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~-SDIDLvV~~~~ 107 (729)
+++.+.+.+++ ++..+|.+|||++.|-+.++ |||||+|+.+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 45667777775 45689999999999999999 99999998764
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.48 E-value=0.0023 Score=58.13 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHH----hhcC-CCceEeeccccCCCCCCCCceEEEecCC
Q 004802 62 RRKAVIDYVQRLIR----NYLG-CEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (729)
Q Consensus 62 ~R~~Vv~~Lq~iI~----~~p~-a~V~~FGS~~tGL~LP~SDIDLvV~~~~ 107 (729)
.+.++++.+++++. .+++ .+|.+|||++.|-+.++|||||+|+...
T Consensus 11 ~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 11 SQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34555555555554 3545 5799999999999999999999998764
No 17
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.19 E-value=0.14 Score=55.64 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=54.4
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHh---hc----C-----------------------------------CCceEeecc
Q 004802 51 AQVQPTVVSEERRKAVIDYVQRLIRN---YL----G-----------------------------------CEVFPFGSV 88 (729)
Q Consensus 51 ~~I~PT~eE~~~R~~Vv~~Lq~iI~~---~p----~-----------------------------------a~V~~FGS~ 88 (729)
..|-|+++|.+.-+.+|..+++.++. |. . .-|.-.|++
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 45889999999999999999998873 31 0 015568999
Q ss_pred ccCCCCC-CCCceEEEecCCCcchHHHHHHHHHHH
Q 004802 89 PLKTYLP-DGDIDLTAFGGLNVEEALANDVCSVLE 122 (729)
Q Consensus 89 ~tGL~LP-~SDIDLvV~~~~~~~~~l~~~V~~iL~ 122 (729)
+-||.|. +-++||||+....-...+++.|...|-
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~~ll~~va~~L~ 135 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLA 135 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBHHHHHHHHHHHH
T ss_pred cccceECCCCceeEEEEeCCCCcHHHHHHHHHHHH
Confidence 9999997 689999999876444455566665554
No 18
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.77 E-value=0.013 Score=60.08 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH-hhc--CCCceEeeccccCCCCCCCCceEEEecCC
Q 004802 65 AVIDYVQRLIR-NYL--GCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (729)
Q Consensus 65 ~Vv~~Lq~iI~-~~p--~a~V~~FGS~~tGL~LP~SDIDLvV~~~~ 107 (729)
.+++.+...++ .+. -..|.+|||++.|-+.++|||||.|+...
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 34444444444 344 36799999999999999999999998764
No 19
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.59 E-value=0.025 Score=58.59 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHH----hhcC-CCceEeeccccCCCCCCCCceEEEecCC
Q 004802 62 RRKAVIDYVQRLIR----NYLG-CEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (729)
Q Consensus 62 ~R~~Vv~~Lq~iI~----~~p~-a~V~~FGS~~tGL~LP~SDIDLvV~~~~ 107 (729)
.|+.+.+.|+++++ .+++ .+|.+|||++.|-+.++|||||+|+...
T Consensus 18 ~~q~Vq~eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 34444444444433 2343 5899999999999999999999999765
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=88.67 E-value=0.73 Score=48.42 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhcCC-CceEeeccccCCCCCCCCceEEEecCC
Q 004802 61 ERRKAVIDYVQRLIRNYLGC-EVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (729)
Q Consensus 61 ~~R~~Vv~~Lq~iI~~~p~a-~V~~FGS~~tGL~LP~SDIDLvV~~~~ 107 (729)
...+++++.|.++++.-+.+ .|.++||+++|..-..|||||+++...
T Consensus 22 ~~~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 22 LKQKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 44456777777777765553 689999999998888899999999765
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=74.60 E-value=28 Score=37.03 Aligned_cols=119 Identities=16% Similarity=0.083 Sum_probs=66.7
Q ss_pred HHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCc-----chHHHHHHHHHHHHHhhccccccceEEEEEE
Q 004802 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-----EEALANDVCSVLEREDQNKAAEFVVKDAQLI 140 (729)
Q Consensus 67 v~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~-----~~~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I 140 (729)
.+.|.+.++. -+.++|.+-|||.-|--+ .+||||+|..+... .+.+...|...|... .+ +..+...
T Consensus 159 a~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~------~~-v~~~l~~ 230 (335)
T 2fmp_A 159 QDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKV------HF-ITDTLSK 230 (335)
T ss_dssp HHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHT------TS-EEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhC------Cc-ceeeeec
Confidence 3444444444 367999999999988766 68999999977321 123455666666542 12 3332222
Q ss_pred -ecceeeE-EEee-------CCeEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCcc
Q 004802 141 -RAEVKLV-KCLV-------QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRIL 203 (729)
Q Consensus 141 -~ARVPII-Kf~~-------~gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~fr~LvlLIK~Wak~er~Ln 203 (729)
..+.-+| ++.. .++.|||-+-......++ ++ .+-+. +..-+-|..||+ ++++.
T Consensus 231 g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~~a-Ll----~fTGS----~~fnr~lR~~A~-~kG~k 292 (335)
T 2fmp_A 231 GETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCG-VL----YFTGS----DIFNKNMRAHAL-EKGFT 292 (335)
T ss_dssp CSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGGHHHH-HH----HHHCC----HHHHHHHHHHHH-HTTEE
T ss_pred CCceEEEEEEeCCcccccCCCceEEEEEEECHHHHHHH-HH----HhhCC----HHHHHHHHHHHH-HcCCc
Confidence 3333332 2222 179999988655444333 21 11121 122355778886 66654
No 22
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=59.09 E-value=57 Score=31.26 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhh--cCCCceEeeccc---cCCCCCCCCceEEEecCCCcchHHHHHHHHHHHHHhhccccccceEEE
Q 004802 63 RKAVIDYVQRLIRNY--LGCEVFPFGSVP---LKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDA 137 (729)
Q Consensus 63 R~~Vv~~Lq~iI~~~--p~a~V~~FGS~~---tGL~LP~SDIDLvV~~~~~~~~~l~~~V~~iL~~~~~n~~~~f~Vk~V 137 (729)
|+.+...+++++..+ -++.-.+.||++ .|.-.+.-||||.+.. .-+..+.++|.. +..+..
T Consensus 15 ~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~------~da~~~~~~L~~--------~g~~~~ 80 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTDE------EGAYEIERIFSE--------FVSXXV 80 (169)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEECH------HHHHHHHHHTGG--------GEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEecc------cCHHHHHHHHHH--------Hhhccc
Confidence 455566666666643 478889999986 5777889999999932 223455556643 222222
Q ss_pred EEE-ecce--eeEEEeeCCeEEEEee
Q 004802 138 QLI-RAEV--KLVKCLVQNIVVDISF 160 (729)
Q Consensus 138 q~I-~ARV--PIIKf~~~gI~VDISf 160 (729)
... .... =...+...++.|||..
T Consensus 81 ~~~~~~~~~~~f~~~~i~~v~VDlm~ 106 (169)
T 2fcl_A 81 RFSSTEXICSHFGELIIDGIXVEIMG 106 (169)
T ss_dssp EEEECSSEEEEEEEEEETTEEEEEEE
T ss_pred CCCccccccceeeEEeeCCEEEEeee
Confidence 111 1111 1334555788888873
No 23
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=53.76 E-value=82 Score=33.43 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCc-chHHHHHHHHHHHHHhhccccccceEEEEEEe--
Q 004802 66 VIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLIR-- 141 (729)
Q Consensus 66 Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~-~~~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I~-- 141 (729)
+.+.|.+.++. -+.++|.+-|||.-|--+ .+||||+|..+... ...++..|...|... .+ +..+...+
T Consensus 155 ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~~------~~-i~~~l~~~~~ 226 (335)
T 2bcq_A 155 IEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQE------GF-LTDDLVSQEE 226 (335)
T ss_dssp HHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHHT------TC-EEEEEECCTT
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHhC------Cc-hHHHhhcccc
Confidence 33444455554 367899999999988766 68999999976532 233445666666542 11 22211110
Q ss_pred -c-ceee---EEEee---CCeEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCcc
Q 004802 142 -A-EVKL---VKCLV---QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRIL 203 (729)
Q Consensus 142 -A-RVPI---IKf~~---~gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~fr~LvlLIK~Wak~er~Ln 203 (729)
. .-.. .++.. .++.|||-+-......++ ++ .+-+. +..-+-|+.||+ ++++.
T Consensus 227 ~g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~g~A-Ll----~fTGS----~~fnr~lR~~A~-~~G~k 286 (335)
T 2bcq_A 227 NGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACA-LL----YFTGS----AHFNRSMRALAK-TKGMS 286 (335)
T ss_dssp STTCCEEEEEECCSSTTCCCEEEEEEECCGGGHHHH-HH----HHHCC----HHHHHHHHHHHH-HTTCE
T ss_pred CCCCceEEEEEEccCCCCCceEEEEEEECHHHHHHH-HH----HhhCC----HHHHHHHHHHHH-HcCCC
Confidence 1 1111 12221 589999988655444333 21 11121 122356788886 55653
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=37.06 E-value=32 Score=36.98 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCC-cchHHHHHHHHHHHH
Q 004802 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN-VEEALANDVCSVLER 123 (729)
Q Consensus 67 v~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~-~~~~l~~~V~~iL~~ 123 (729)
.+.|.+.++. -|.++|.+-|||.-|--. .+||||+|..+.. ....++..|...|..
T Consensus 163 ~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~ 220 (360)
T 2ihm_A 163 QQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQS 220 (360)
T ss_dssp HHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHh
Confidence 3444444544 468999999999998766 6899999997653 233455666666654
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=32.81 E-value=56 Score=35.38 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCcc-hH--HHHHHHHHHHH
Q 004802 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE-EA--LANDVCSVLER 123 (729)
Q Consensus 67 v~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~~-~~--l~~~V~~iL~~ 123 (729)
.+.|.+.++. -+.++|.+-|||.-|--. .+||||+|..+.... .. ++..|...|..
T Consensus 183 a~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~ 242 (381)
T 1jms_A 183 SMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQ 242 (381)
T ss_dssp HHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHh
Confidence 3344444443 478999999999988776 679999999875431 11 44455555544
No 26
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=30.61 E-value=30 Score=37.93 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHhh---cCCCceEeeccccCCCCCC---CCceEEEe
Q 004802 35 GAEYWQRAEEATQGIIAQVQPTVVSEERRKA---VIDYVQRLIRNY---LGCEVFPFGSVPLKTYLPD---GDIDLTAF 104 (729)
Q Consensus 35 ~~e~w~~lE~ei~efv~~I~PT~eE~~~R~~---Vv~~Lq~iI~~~---p~a~V~~FGS~~tGL~LP~---SDIDLvV~ 104 (729)
+.+...++-+++-+-+.-.+|.+.+...|.. ++..|.++++++ .+-.+.+||||..-+--|. +|||+.=.
T Consensus 130 d~~s~~~la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqT 208 (479)
T 3er9_B 130 NVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQT 208 (479)
T ss_dssp CGGGGHHHHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEES
T ss_pred chHHHHHHHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeee
Confidence 3333333333333333345666545556655 366777777654 4788999999998886664 99998765
No 27
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=27.54 E-value=39 Score=35.18 Aligned_cols=43 Identities=19% Similarity=-0.024 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCC-CceEeeccccCC--CCCCCCceEEEecCC
Q 004802 65 AVIDYVQRLIRNYLGC-EVFPFGSVPLKT--YLPDGDIDLTAFGGL 107 (729)
Q Consensus 65 ~Vv~~Lq~iI~~~p~a-~V~~FGS~~tGL--~LP~SDIDLvV~~~~ 107 (729)
++++.|.++.+.-..+ .|.+.||.+++- .=.-||+||+++...
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 5677777777655543 588899999966 555699999999864
Done!