Query 004803
Match_columns 729
No_of_seqs 552 out of 2419
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 13:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 7.9E-46 1.7E-50 419.4 20.5 611 97-725 286-940 (1100)
2 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 3.6E-40 7.9E-45 331.5 17.2 192 165-376 1-192 (192)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 9.6E-40 2.1E-44 328.9 18.9 189 166-372 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.2E-39 2.6E-44 330.4 19.2 198 163-376 2-203 (203)
5 KOG1451 Oligophrenin-1 and rel 100.0 4.6E-38 1E-42 342.1 30.6 304 14-376 260-571 (812)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 3.1E-39 6.8E-44 326.4 18.5 191 164-372 1-199 (199)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 5.8E-39 1.3E-43 321.0 18.7 185 166-367 1-186 (186)
8 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 6.5E-39 1.4E-43 328.1 19.2 200 165-376 1-209 (216)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1E-38 2.2E-43 327.2 18.5 210 163-376 2-218 (220)
10 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 7.2E-39 1.6E-43 319.4 16.4 176 166-374 1-181 (182)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.8E-38 3.8E-43 319.8 17.2 190 164-367 1-195 (195)
12 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.1E-38 4.4E-43 323.7 17.6 192 166-376 1-211 (213)
13 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 3.6E-38 7.9E-43 315.9 18.0 184 164-367 1-188 (188)
14 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 5.4E-38 1.2E-42 316.7 18.9 190 165-372 1-196 (196)
15 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 4.1E-38 9E-43 315.3 17.7 183 166-367 1-187 (187)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 6.8E-38 1.5E-42 315.7 19.2 190 162-372 2-195 (195)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1E-37 2.2E-42 315.5 18.1 186 166-367 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 9.2E-38 2E-42 312.4 17.3 184 166-366 1-185 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.5E-37 3.2E-42 314.8 18.8 195 165-376 1-199 (202)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.1E-37 4.6E-42 314.3 18.3 187 177-376 6-204 (206)
21 cd04377 RhoGAP_myosin_IX RhoGA 100.0 3.9E-37 8.4E-42 308.0 17.9 185 166-367 1-186 (186)
22 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.2E-37 9.2E-42 316.4 18.6 188 165-372 1-225 (225)
23 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.3E-37 7.2E-42 312.6 17.4 187 166-367 1-203 (203)
24 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 2.7E-37 5.9E-42 310.1 16.4 177 165-374 1-189 (190)
25 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 3.6E-37 7.8E-42 309.6 17.0 185 166-372 1-192 (192)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 6.6E-37 1.4E-41 306.1 18.1 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 6.9E-37 1.5E-41 311.9 18.1 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 2.2E-36 4.8E-41 304.7 18.3 163 166-329 1-167 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2E-36 4.4E-41 303.6 17.8 184 164-367 1-189 (189)
30 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.1E-36 9E-41 304.9 19.0 195 166-368 1-206 (207)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.7E-36 5.9E-41 306.7 17.4 186 166-376 1-200 (208)
32 KOG4407 Predicted Rho GTPase-a 100.0 3.4E-37 7.3E-42 354.8 9.4 339 18-376 922-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 2.6E-35 5.7E-40 294.3 17.9 180 167-368 2-184 (184)
34 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 4.3E-35 9.3E-40 294.6 18.3 178 177-371 14-192 (193)
35 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 3.6E-35 7.8E-40 299.3 16.6 189 166-374 1-210 (212)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 6.5E-35 1.4E-39 292.1 16.6 178 166-367 1-187 (187)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.1E-34 2.4E-39 293.6 16.7 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 3.1E-34 6.7E-39 288.4 16.8 177 170-368 5-184 (200)
39 KOG1117 Rho- and Arf-GTPase ac 100.0 2E-32 4.4E-37 307.7 16.0 323 17-376 490-900 (1186)
40 KOG1450 Predicted Rho GTPase-a 100.0 1.3E-31 2.9E-36 301.7 18.4 321 34-373 270-649 (650)
41 smart00324 RhoGAP GTPase-activ 100.0 3.8E-31 8.3E-36 261.0 16.9 170 179-367 2-173 (174)
42 KOG4270 GTPase-activator prote 100.0 4.2E-29 9.2E-34 281.0 27.0 203 159-377 140-348 (577)
43 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 7.5E-30 1.6E-34 261.9 14.9 158 163-327 10-195 (220)
44 KOG2200 Tumour suppressor prot 100.0 5.2E-30 1.1E-34 281.2 14.4 209 163-376 298-514 (674)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 5.1E-29 1.1E-33 243.3 17.5 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 7.6E-30 1.6E-34 288.6 11.6 185 159-376 893-1087(1112)
47 PF00620 RhoGAP: RhoGAP domain 100.0 2.4E-28 5.1E-33 235.1 10.4 145 181-326 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 1E-27 2.3E-32 255.2 14.5 201 157-377 245-450 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.7E-26 3.6E-31 251.2 15.0 204 162-376 63-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 2E-26 4.3E-31 255.8 7.8 241 159-422 76-316 (741)
51 PF14389 Lzipper-MIP1: Leucine 99.9 1.4E-24 3E-29 190.9 10.3 87 614-700 1-88 (88)
52 KOG1453 Chimaerin and related 99.9 3.1E-24 6.7E-29 258.5 10.7 162 165-327 602-771 (918)
53 KOG3564 GTPase-activating prot 99.9 4.1E-23 8.8E-28 222.1 15.2 149 177-327 359-508 (604)
54 KOG1452 Predicted Rho GTPase-a 99.8 3.7E-18 7.9E-23 176.3 11.1 164 163-327 182-353 (442)
55 KOG4271 Rho-GTPase activating 99.7 3E-18 6.5E-23 196.3 8.2 161 162-323 914-1076(1100)
56 cd01233 Unc104 Unc-104 pleckst 99.6 9.8E-16 2.1E-20 138.5 11.8 92 19-124 2-98 (100)
57 cd04405 RhoGAP_BRCC3-like RhoG 99.6 9.7E-16 2.1E-20 155.4 12.5 185 164-376 20-232 (235)
58 cd01251 PH_centaurin_alpha Cen 99.6 1E-15 2.2E-20 139.2 11.1 91 21-125 1-101 (103)
59 cd01264 PH_melted Melted pleck 99.6 2.6E-15 5.7E-20 135.4 10.0 91 21-124 2-101 (101)
60 cd01260 PH_CNK Connector enhan 99.6 7.5E-15 1.6E-19 131.3 11.1 92 21-123 2-96 (96)
61 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 9.1E-15 2E-19 131.0 10.9 88 22-123 2-93 (95)
62 cd01238 PH_Tec Tec pleckstrin 99.6 8.5E-15 1.9E-19 133.8 10.2 94 20-123 1-106 (106)
63 cd01235 PH_SETbf Set binding f 99.5 3E-14 6.5E-19 128.1 10.5 89 22-124 2-101 (101)
64 cd01252 PH_cytohesin Cytohesin 99.5 4.4E-14 9.5E-19 132.7 12.0 99 20-129 1-118 (125)
65 cd01247 PH_GPBP Goodpasture an 99.5 4.3E-14 9.3E-19 125.7 10.9 89 22-122 2-90 (91)
66 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 3.8E-14 8.3E-19 142.4 11.0 144 182-327 8-166 (198)
67 cd01236 PH_outspread Outspread 99.5 4.9E-14 1.1E-18 128.1 9.5 89 21-121 1-101 (104)
68 cd01241 PH_Akt Akt pleckstrin 99.5 2E-13 4.4E-18 123.9 11.1 97 19-123 1-101 (102)
69 cd01257 PH_IRS Insulin recepto 99.5 2.4E-13 5.3E-18 123.0 10.2 92 18-122 1-100 (101)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.4 3.8E-13 8.3E-18 123.3 10.2 88 22-123 2-107 (108)
71 cd01250 PH_centaurin Centaurin 99.4 5.5E-13 1.2E-17 117.6 9.6 90 21-122 1-93 (94)
72 cd01246 PH_oxysterol_bp Oxyste 99.4 7.7E-13 1.7E-17 115.9 10.0 91 21-123 1-91 (91)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 3.1E-12 6.6E-17 115.3 9.6 77 34-123 18-98 (98)
74 cd01263 PH_anillin Anillin Ple 99.3 4.1E-12 9E-17 118.6 9.8 98 20-123 2-122 (122)
75 cd01245 PH_RasGAP_CG5898 RAS G 99.3 3.2E-12 6.9E-17 114.9 8.5 87 22-122 2-97 (98)
76 PF00169 PH: PH domain; Inter 99.3 1.5E-11 3.3E-16 108.5 12.5 101 19-124 1-103 (104)
77 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 2.9E-11 6.3E-16 112.3 11.0 101 21-125 2-112 (117)
78 cd01253 PH_beta_spectrin Beta- 99.2 3.2E-11 6.8E-16 109.4 9.7 83 33-122 19-103 (104)
79 KOG0930 Guanine nucleotide exc 99.2 2.7E-11 5.8E-16 124.2 9.6 101 19-129 260-380 (395)
80 KOG4370 Ral-GTPase effector RL 99.2 1.9E-11 4.2E-16 131.2 6.8 170 179-381 70-280 (514)
81 PF15413 PH_11: Pleckstrin hom 99.2 1.2E-10 2.5E-15 107.7 9.4 97 21-123 1-112 (112)
82 cd01237 Unc112 Unc-112 pleckst 99.1 2.7E-10 6E-15 103.0 10.2 91 29-124 12-103 (106)
83 KOG3565 Cdc42-interacting prot 99.1 1.4E-10 3.1E-15 134.7 8.0 147 178-326 216-366 (640)
84 cd01219 PH_FGD FGD (faciogenit 99.1 9.5E-10 2.1E-14 99.7 11.5 98 19-125 2-100 (101)
85 PF15409 PH_8: Pleckstrin homo 99.0 1.2E-09 2.7E-14 96.2 10.0 86 23-123 1-88 (89)
86 PF15410 PH_9: Pleckstrin homo 99.0 7.1E-10 1.5E-14 103.5 8.5 103 20-124 1-118 (119)
87 cd01254 PH_PLD Phospholipase D 99.0 1.3E-09 2.8E-14 102.1 10.1 76 36-123 32-121 (121)
88 smart00233 PH Pleckstrin homol 99.0 6.6E-09 1.4E-13 90.0 12.0 97 19-124 1-101 (102)
89 cd01249 PH_oligophrenin Oligop 98.8 3.1E-08 6.7E-13 89.5 10.2 97 21-121 1-102 (104)
90 cd01256 PH_dynamin Dynamin ple 98.8 2.9E-08 6.3E-13 87.7 9.5 99 19-123 1-104 (110)
91 KOG0690 Serine/threonine prote 98.8 9.1E-09 2E-13 108.7 5.8 108 14-127 10-119 (516)
92 cd00821 PH Pleckstrin homology 98.7 4.5E-08 9.9E-13 83.9 8.3 93 21-122 1-95 (96)
93 cd00900 PH-like Pleckstrin hom 98.7 1.5E-07 3.3E-12 81.2 11.2 96 22-123 2-99 (99)
94 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 1.5E-08 3.4E-13 90.2 4.4 98 20-127 3-113 (117)
95 KOG4724 Predicted Rho GTPase-a 98.5 9.2E-08 2E-12 108.3 5.8 167 160-326 411-589 (741)
96 cd01220 PH_CDEP Chondrocyte-de 98.5 9.1E-07 2E-11 80.1 11.1 97 19-125 2-98 (99)
97 cd01243 PH_MRCK MRCK (myotonic 98.5 1.3E-06 2.8E-11 80.5 11.7 104 20-123 3-118 (122)
98 KOG1090 Predicted dual-specifi 98.5 6.6E-08 1.4E-12 112.5 2.5 95 16-124 1631-1731(1732)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 98.5 4.3E-07 9.3E-12 82.6 7.2 95 21-124 2-108 (114)
100 KOG3640 Actin binding protein 98.4 4.6E-07 1E-11 105.9 6.5 104 16-125 987-1107(1116)
101 cd01242 PH_ROK Rok (Rho- assoc 98.3 6.6E-06 1.4E-10 74.9 11.6 103 21-125 2-111 (112)
102 PF08101 DUF1708: Domain of un 98.2 8.1E-06 1.8E-10 91.1 10.9 146 181-328 9-169 (420)
103 PF14593 PH_3: PH domain; PDB: 98.1 2E-05 4.4E-10 71.8 10.1 90 16-125 10-100 (104)
104 KOG2059 Ras GTPase-activating 97.9 2E-05 4.3E-10 90.5 8.0 114 16-144 562-683 (800)
105 KOG0932 Guanine nucleotide exc 97.8 9.5E-06 2.1E-10 90.7 2.0 121 7-135 494-630 (774)
106 KOG3751 Growth factor receptor 97.7 7.1E-05 1.5E-09 83.5 7.2 104 16-125 314-425 (622)
107 PLN00188 enhanced disease resi 97.6 0.00021 4.5E-09 83.6 10.4 104 17-127 2-112 (719)
108 cd01258 PH_syntrophin Syntroph 97.6 0.00019 4.2E-09 65.8 7.4 87 33-122 15-107 (108)
109 cd01218 PH_phafin2 Phafin2 Pl 97.6 0.00077 1.7E-08 61.6 10.8 98 18-126 3-100 (104)
110 cd01261 PH_SOS Son of Sevenles 97.5 0.00086 1.9E-08 62.1 10.6 103 17-126 2-111 (112)
111 PTZ00267 NIMA-related protein 97.5 0.00022 4.8E-09 81.7 8.3 102 15-125 373-477 (478)
112 cd01239 PH_PKD Protein kinase 97.5 0.00033 7.2E-09 64.4 7.7 90 20-123 1-117 (117)
113 KOG0521 Putative GTPase activa 97.3 0.00011 2.4E-09 88.3 2.8 99 17-127 272-371 (785)
114 cd01262 PH_PDK1 3-Phosphoinosi 96.7 0.0094 2E-07 52.7 8.4 86 19-123 1-87 (89)
115 PF12814 Mcp5_PH: Meiotic cell 96.6 0.032 6.8E-07 52.6 11.7 99 24-125 14-122 (123)
116 PF15408 PH_7: Pleckstrin homo 96.5 0.00093 2E-08 58.0 0.8 87 22-122 1-95 (104)
117 PTZ00283 serine/threonine prot 96.5 0.0084 1.8E-07 69.3 8.7 37 87-125 454-490 (496)
118 KOG0248 Cytoplasmic protein Ma 96.4 0.0023 5E-08 73.6 3.4 95 17-125 247-342 (936)
119 KOG3543 Ca2+-dependent activat 96.3 0.00078 1.7E-08 76.4 -0.7 102 16-127 461-568 (1218)
120 cd01222 PH_clg Clg (common-sit 96.3 0.056 1.2E-06 48.9 11.0 93 18-124 3-95 (97)
121 KOG3723 PH domain protein Melt 96.2 0.0022 4.8E-08 72.4 2.1 96 20-127 736-839 (851)
122 KOG3531 Rho guanine nucleotide 96.2 0.0019 4.1E-08 75.8 1.2 83 34-124 937-1019(1036)
123 cd01240 PH_beta-ARK Beta adren 96.1 0.0073 1.6E-07 55.0 4.3 94 18-125 2-99 (116)
124 KOG1453 Chimaerin and related 95.9 0.004 8.7E-08 76.8 2.6 161 165-326 462-668 (918)
125 PLN02866 phospholipase D 95.9 0.06 1.3E-06 66.0 12.3 88 35-128 216-311 (1068)
126 KOG1739 Serine/threonine prote 95.1 0.021 4.7E-07 63.7 4.5 94 19-125 24-117 (611)
127 PF15406 PH_6: Pleckstrin homo 94.9 0.052 1.1E-06 49.6 5.5 69 40-121 42-110 (112)
128 cd01221 PH_ephexin Ephexin Ple 94.9 0.31 6.7E-06 46.1 10.8 79 37-121 27-119 (125)
129 cd01224 PH_Collybistin Collybi 94.2 0.62 1.3E-05 43.0 10.9 100 19-122 2-105 (109)
130 KOG1449 Predicted Rho GTPase-a 94.0 0.011 2.5E-07 67.1 -1.0 175 163-376 207-390 (670)
131 KOG1449 Predicted Rho GTPase-a 93.7 0.015 3.3E-07 66.2 -0.7 74 294-376 1-74 (670)
132 cd01228 PH_BCR-related BCR (br 93.6 0.3 6.4E-06 43.8 7.4 89 18-123 2-93 (96)
133 cd01232 PH_TRIO Trio pleckstri 93.6 1.6 3.4E-05 40.8 12.6 87 38-125 25-113 (114)
134 KOG0804 Cytoplasmic Zn-finger 93.4 0.6 1.3E-05 52.3 10.9 111 585-702 347-457 (493)
135 PF15404 PH_4: Pleckstrin homo 93.1 0.45 9.8E-06 48.0 8.7 34 21-56 1-34 (185)
136 KOG4424 Predicted Rho/Rac guan 92.8 0.12 2.7E-06 59.2 4.7 105 14-127 267-372 (623)
137 cd01231 PH_Lnk LNK-family Plec 92.1 0.75 1.6E-05 41.7 7.7 82 34-122 18-106 (107)
138 COG1579 Zn-ribbon protein, pos 91.8 4.8 0.0001 42.3 14.6 70 582-651 10-82 (239)
139 PF10186 Atg14: UV radiation r 91.3 2 4.4E-05 45.7 11.9 123 579-702 24-155 (302)
140 KOG1117 Rho- and Arf-GTPase ac 91.2 0.14 3.1E-06 60.8 3.0 93 17-125 85-178 (1186)
141 KOG3549 Syntrophins (type gamm 91.2 0.34 7.4E-06 52.4 5.5 104 14-125 276-387 (505)
142 PF12240 Angiomotin_C: Angiomo 90.8 1.6 3.5E-05 44.3 9.5 72 606-690 13-88 (205)
143 cd01226 PH_exo84 Exocyst compl 90.3 2.6 5.7E-05 38.4 9.6 77 39-124 21-98 (100)
144 cd01227 PH_Dbs Dbs (DBL's big 89.3 3.8 8.3E-05 39.3 10.4 87 38-125 30-116 (133)
145 PF09726 Macoilin: Transmembra 88.9 64 0.0014 39.3 28.4 31 666-696 545-575 (697)
146 KOG0995 Centromere-associated 88.4 7.6 0.00016 45.2 13.6 103 580-699 219-327 (581)
147 KOG2391 Vacuolar sorting prote 88.3 5.9 0.00013 43.3 12.0 99 587-687 212-324 (365)
148 cd01223 PH_Vav Vav pleckstrin 88.1 2.5 5.5E-05 39.5 8.0 86 37-125 20-112 (116)
149 KOG1737 Oxysterol-binding prot 87.9 0.37 8.1E-06 58.0 3.1 90 20-123 78-167 (799)
150 KOG1738 Membrane-associated gu 86.5 0.1 2.3E-06 60.4 -2.4 58 19-80 562-620 (638)
151 PF15405 PH_5: Pleckstrin homo 86.4 2 4.3E-05 41.2 6.6 35 89-123 100-134 (135)
152 cd00089 HR1 Protein kinase C-r 86.0 2 4.4E-05 36.4 5.8 67 622-700 3-69 (72)
153 PF00038 Filament: Intermediat 83.7 7.9 0.00017 41.9 10.6 65 585-649 50-124 (312)
154 KOG4047 Docking protein 1 (p62 83.6 0.56 1.2E-05 52.9 1.6 103 17-124 6-117 (429)
155 cd01225 PH_Cool_Pix Cool (clon 81.9 8.9 0.00019 35.6 8.4 81 38-124 29-109 (111)
156 KOG3551 Syntrophins (type beta 79.8 1.3 2.8E-05 48.9 2.7 104 18-125 291-402 (506)
157 PRK10884 SH3 domain-containing 79.8 22 0.00049 36.6 11.6 71 607-701 104-174 (206)
158 PF00038 Filament: Intermediat 79.0 64 0.0014 34.8 15.6 113 581-693 74-193 (312)
159 KOG0517 Beta-spectrin [Cytoske 78.2 0.048 1E-06 69.0 -9.7 104 16-125 2296-2410(2473)
160 PF09755 DUF2046: Uncharacteri 75.9 81 0.0017 34.5 14.7 34 624-657 170-207 (310)
161 PF15619 Lebercilin: Ciliary p 75.1 22 0.00047 36.3 9.9 68 623-690 120-188 (194)
162 KOG4807 F-actin binding protei 75.0 0.045 9.7E-07 59.6 -9.9 119 583-704 419-544 (593)
163 PF09726 Macoilin: Transmembra 73.3 2.3E+02 0.005 34.7 21.0 19 631-649 491-509 (697)
164 PF07106 TBPIP: Tat binding pr 73.1 16 0.00034 36.2 8.1 66 621-694 72-137 (169)
165 PF00769 ERM: Ezrin/radixin/mo 73.1 97 0.0021 32.8 14.5 112 586-701 2-117 (246)
166 PRK11637 AmiB activator; Provi 72.4 26 0.00056 39.9 10.8 36 670-705 100-135 (428)
167 PF14197 Cep57_CLD_2: Centroso 71.7 19 0.00042 30.6 7.1 55 585-639 1-65 (69)
168 PF08317 Spc7: Spc7 kinetochor 71.6 59 0.0013 35.7 12.9 21 618-638 181-201 (325)
169 PF15411 PH_10: Pleckstrin hom 70.2 56 0.0012 30.5 10.6 86 35-120 19-116 (116)
170 KOG4674 Uncharacterized conser 70.1 21 0.00045 47.2 10.0 98 609-706 793-893 (1822)
171 KOG0996 Structural maintenance 69.4 1.9E+02 0.0041 37.0 17.3 71 618-696 817-894 (1293)
172 TIGR03185 DNA_S_dndD DNA sulfu 68.9 63 0.0014 38.9 13.5 69 584-653 184-255 (650)
173 KOG4236 Serine/threonine prote 68.8 3.9 8.5E-05 47.2 3.0 100 14-124 408-523 (888)
174 cd01255 PH_TIAM TIAM Pleckstri 68.3 33 0.00072 33.3 8.6 86 39-126 51-156 (160)
175 PF10168 Nup88: Nuclear pore c 68.3 69 0.0015 39.2 13.6 109 583-701 552-667 (717)
176 TIGR01843 type_I_hlyD type I s 68.3 84 0.0018 35.0 13.7 23 673-695 210-232 (423)
177 PF10186 Atg14: UV radiation r 67.6 1.3E+02 0.0028 31.9 14.4 45 583-627 64-108 (302)
178 KOG0161 Myosin class II heavy 67.2 97 0.0021 41.9 15.2 79 618-696 1010-1092(1930)
179 COG1579 Zn-ribbon protein, pos 67.1 1.2E+02 0.0026 32.1 13.3 39 611-649 93-131 (239)
180 PF03148 Tektin: Tektin family 66.8 45 0.00098 37.6 11.0 105 587-698 231-349 (384)
181 PRK11637 AmiB activator; Provi 66.0 1.6E+02 0.0035 33.5 15.4 87 580-694 168-254 (428)
182 KOG1264 Phospholipase C [Lipid 65.9 6.4 0.00014 47.3 4.1 41 87-127 873-913 (1267)
183 PF12761 End3: Actin cytoskele 65.6 84 0.0018 32.1 11.4 115 560-700 74-194 (195)
184 cd01248 PH_PLC Phospholipase C 65.0 58 0.0013 29.9 9.6 34 89-122 80-114 (115)
185 PF07888 CALCOCO1: Calcium bin 64.7 32 0.0007 40.3 9.4 51 594-648 141-191 (546)
186 PF05911 DUF869: Plant protein 64.0 50 0.0011 40.5 11.2 98 583-701 597-694 (769)
187 KOG2129 Uncharacterized conser 63.7 37 0.00079 38.2 9.0 69 584-652 210-316 (552)
188 PF08614 ATG16: Autophagy prot 63.4 88 0.0019 31.6 11.4 98 586-700 85-185 (194)
189 COG5185 HEC1 Protein involved 62.0 1.2E+02 0.0026 34.9 12.7 40 662-701 326-365 (622)
190 PHA02562 46 endonuclease subun 61.7 1.7E+02 0.0038 34.1 15.2 32 665-696 298-329 (562)
191 PF02185 HR1: Hr1 repeat; Int 61.7 23 0.00051 29.7 5.8 60 628-701 1-61 (70)
192 PF08826 DMPK_coil: DMPK coile 61.5 43 0.00094 27.8 7.1 27 613-639 31-57 (61)
193 KOG0977 Nuclear envelope prote 61.2 1.1E+02 0.0025 36.0 12.9 85 579-680 110-218 (546)
194 PF06637 PV-1: PV-1 protein (P 60.2 1.1E+02 0.0024 34.2 11.8 60 580-639 302-374 (442)
195 KOG4807 F-actin binding protei 60.2 2.1E+02 0.0046 32.1 14.0 81 36-125 34-115 (593)
196 KOG0705 GTPase-activating prot 60.1 7 0.00015 45.4 2.9 35 89-125 446-480 (749)
197 TIGR01000 bacteriocin_acc bact 59.5 1.6E+02 0.0035 33.8 14.1 42 610-651 161-202 (457)
198 PF12240 Angiomotin_C: Angiomo 58.5 1.7E+02 0.0038 30.1 12.1 116 582-697 17-153 (205)
199 PF12128 DUF3584: Protein of u 58.4 1E+02 0.0022 40.1 13.3 108 580-697 382-493 (1201)
200 PF05508 Ran-binding: RanGTP-b 57.7 69 0.0015 34.9 9.7 81 585-691 45-136 (302)
201 PF02403 Seryl_tRNA_N: Seryl-t 56.9 83 0.0018 28.5 9.0 70 623-699 31-100 (108)
202 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.0 1.9E+02 0.004 27.5 14.8 59 580-638 19-83 (132)
203 PHA02562 46 endonuclease subun 55.8 1.5E+02 0.0032 34.8 13.2 38 675-715 257-294 (562)
204 PF08317 Spc7: Spc7 kinetochor 55.8 2.9E+02 0.0064 30.3 14.7 29 666-694 209-237 (325)
205 TIGR02231 conserved hypothetic 55.8 31 0.00068 40.3 7.6 37 663-699 135-171 (525)
206 KOG0161 Myosin class II heavy 55.3 2E+02 0.0043 39.1 15.0 65 587-651 857-931 (1930)
207 PRK09039 hypothetical protein; 55.0 2.1E+02 0.0046 31.8 13.4 18 583-600 47-64 (343)
208 KOG3727 Mitogen inducible gene 54.9 1.6 3.4E-05 50.3 -3.2 87 34-124 372-458 (664)
209 PRK00409 recombination and DNA 54.4 1.8E+02 0.0039 36.1 13.9 79 579-677 517-595 (782)
210 PRK09039 hypothetical protein; 54.4 1.7E+02 0.0037 32.5 12.6 31 582-612 53-83 (343)
211 KOG1656 Protein involved in gl 53.8 2.4E+02 0.0053 29.1 12.2 46 559-607 7-53 (221)
212 PF13851 GAS: Growth-arrest sp 53.7 1.8E+02 0.0039 29.8 11.8 103 583-696 28-130 (201)
213 KOG4424 Predicted Rho/Rac guan 53.3 18 0.0004 42.2 4.8 84 34-125 510-596 (623)
214 PF03962 Mnd1: Mnd1 family; I 53.1 76 0.0017 32.2 8.8 28 666-693 103-130 (188)
215 PF07798 DUF1640: Protein of u 52.5 2.3E+02 0.005 28.3 12.1 35 608-642 67-101 (177)
216 PLN02372 violaxanthin de-epoxi 51.9 46 0.00099 37.6 7.4 26 576-601 355-380 (455)
217 PF06637 PV-1: PV-1 protein (P 50.8 3.1E+02 0.0068 30.9 13.4 104 586-712 282-390 (442)
218 PRK10884 SH3 domain-containing 50.5 1.9E+02 0.004 29.9 11.2 15 673-687 153-167 (206)
219 COG1196 Smc Chromosome segrega 50.2 2.7E+02 0.0059 36.1 15.2 7 102-108 111-117 (1163)
220 PF15188 CCDC-167: Coiled-coil 50.0 96 0.0021 27.6 7.7 41 662-708 31-71 (85)
221 PF11083 Streptin-Immun: Lanti 49.2 80 0.0017 28.8 7.2 59 584-642 1-73 (99)
222 KOG3520 Predicted guanine nucl 48.6 28 0.00062 43.9 5.8 46 85-130 682-727 (1167)
223 PF02841 GBP_C: Guanylate-bind 48.0 2.9E+02 0.0064 29.8 13.0 32 611-642 226-257 (297)
224 PF03938 OmpH: Outer membrane 47.9 2E+02 0.0044 27.6 10.7 74 607-702 36-109 (158)
225 KOG1853 LIS1-interacting prote 47.8 3.5E+02 0.0075 28.8 12.5 21 677-697 161-181 (333)
226 PF11559 ADIP: Afadin- and alp 47.5 2.7E+02 0.0058 26.8 11.8 21 677-697 130-150 (151)
227 KOG4460 Nuclear pore complex, 46.3 2.6E+02 0.0057 32.9 12.3 123 581-713 573-702 (741)
228 KOG3523 Putative guanine nucle 46.2 46 0.001 39.3 6.6 82 35-121 497-591 (695)
229 KOG0977 Nuclear envelope prote 46.0 1.7E+02 0.0036 34.6 11.1 78 620-700 105-189 (546)
230 PF09304 Cortex-I_coil: Cortex 46.0 1.5E+02 0.0033 27.4 8.6 16 584-599 4-19 (107)
231 KOG4674 Uncharacterized conser 45.8 1.9E+02 0.0041 38.9 12.5 113 581-699 1256-1379(1822)
232 PF07798 DUF1640: Protein of u 45.7 3.2E+02 0.0069 27.2 12.9 81 606-698 76-156 (177)
233 PF09486 HrpB7: Bacterial type 45.7 3.2E+02 0.0068 27.1 12.5 99 601-700 13-113 (158)
234 KOG0996 Structural maintenance 45.6 2.9E+02 0.0062 35.5 13.4 43 612-654 396-438 (1293)
235 KOG0018 Structural maintenance 45.4 3.9E+02 0.0085 34.0 14.4 109 580-699 650-758 (1141)
236 PF06248 Zw10: Centromere/kine 45.3 2.7E+02 0.0058 33.2 13.3 102 579-697 11-113 (593)
237 PF12128 DUF3584: Protein of u 45.0 3.4E+02 0.0074 35.4 15.0 42 558-601 582-623 (1201)
238 TIGR02168 SMC_prok_B chromosom 44.5 4E+02 0.0086 33.9 15.5 26 672-697 914-939 (1179)
239 COG2433 Uncharacterized conser 44.4 1.3E+02 0.0028 35.8 9.8 102 582-683 429-541 (652)
240 PRK04863 mukB cell division pr 44.1 1.9E+02 0.004 38.6 12.3 31 622-652 514-544 (1486)
241 TIGR01837 PHA_granule_1 poly(h 44.1 94 0.002 29.1 7.3 20 674-693 97-116 (118)
242 TIGR03185 DNA_S_dndD DNA sulfu 43.8 2.8E+02 0.0061 33.4 13.2 99 582-699 421-521 (650)
243 PRK02224 chromosome segregatio 43.7 3E+02 0.0065 34.3 13.9 14 107-120 108-121 (880)
244 smart00787 Spc7 Spc7 kinetocho 43.3 4.9E+02 0.011 28.6 14.1 32 580-611 146-177 (312)
245 PF06785 UPF0242: Uncharacteri 43.3 3.6E+02 0.0077 29.9 12.2 82 602-700 140-221 (401)
246 KOG0612 Rho-associated, coiled 43.2 1.7E+02 0.0037 37.5 11.1 72 619-705 747-818 (1317)
247 PF08581 Tup_N: Tup N-terminal 43.0 1.3E+02 0.0027 26.4 7.3 52 588-639 24-75 (79)
248 KOG0976 Rho/Rac1-interacting s 42.9 2.6E+02 0.0056 34.4 12.0 87 578-694 312-407 (1265)
249 PRK05431 seryl-tRNA synthetase 42.7 1.3E+02 0.0029 34.3 9.8 72 624-702 31-102 (425)
250 KOG0837 Transcriptional activa 42.6 1.7E+02 0.0037 31.2 9.5 59 614-703 213-271 (279)
251 PLN02678 seryl-tRNA synthetase 42.4 71 0.0015 36.8 7.5 73 622-701 34-106 (448)
252 COG2433 Uncharacterized conser 42.3 3.6E+02 0.0078 32.3 12.9 88 581-700 421-508 (652)
253 PRK12704 phosphodiesterase; Pr 42.1 5E+02 0.011 30.7 14.5 35 673-707 117-151 (520)
254 PF07106 TBPIP: Tat binding pr 41.9 96 0.0021 30.6 7.5 57 583-639 73-134 (169)
255 PF15397 DUF4618: Domain of un 41.5 2.2E+02 0.0049 30.4 10.4 29 673-701 200-228 (258)
256 TIGR03007 pepcterm_ChnLen poly 41.5 6.1E+02 0.013 29.2 15.6 34 668-701 312-345 (498)
257 PF13094 CENP-Q: CENP-Q, a CEN 41.3 3.5E+02 0.0075 26.4 11.3 73 578-650 16-92 (160)
258 PF08172 CASP_C: CASP C termin 41.1 1.5E+02 0.0032 31.5 9.1 27 625-651 3-29 (248)
259 PF12325 TMF_TATA_bd: TATA ele 40.7 3.2E+02 0.0069 25.8 11.0 47 583-637 38-84 (120)
260 PF04156 IncA: IncA protein; 40.7 3.8E+02 0.0082 26.6 15.4 39 581-619 80-118 (191)
261 PRK03918 chromosome segregatio 40.7 4.9E+02 0.011 32.3 15.1 11 312-322 15-25 (880)
262 PRK10929 putative mechanosensi 40.5 5.7E+02 0.012 33.1 15.4 111 580-694 171-286 (1109)
263 COG4026 Uncharacterized protei 40.5 4.3E+02 0.0093 27.7 11.7 29 669-697 173-201 (290)
264 KOG2077 JNK/SAPK-associated pr 40.4 69 0.0015 37.5 6.7 54 586-639 319-375 (832)
265 cd07596 BAR_SNX The Bin/Amphip 40.3 2.3E+02 0.005 28.2 10.2 39 663-701 142-180 (218)
266 TIGR01010 BexC_CtrB_KpsE polys 40.3 2.8E+02 0.006 30.7 11.7 22 618-639 167-188 (362)
267 PF14992 TMCO5: TMCO5 family 40.2 1.7E+02 0.0037 31.7 9.3 32 662-693 112-143 (280)
268 PF09744 Jnk-SapK_ap_N: JNK_SA 40.2 1.4E+02 0.0029 29.6 8.0 66 625-696 54-119 (158)
269 KOG4270 GTPase-activator prote 40.1 23 0.0005 41.8 3.1 153 158-324 32-195 (577)
270 PRK02224 chromosome segregatio 39.9 3.4E+02 0.0074 33.8 13.5 56 583-638 280-338 (880)
271 PF07820 TraC: TraC-like prote 39.9 96 0.0021 27.9 6.2 30 623-652 4-39 (92)
272 KOG3915 Transcription regulato 39.8 1.3E+02 0.0029 34.4 8.7 64 587-652 501-566 (641)
273 PRK11519 tyrosine kinase; Prov 39.6 4.1E+02 0.0088 32.6 13.8 80 604-692 250-330 (719)
274 TIGR01005 eps_transp_fam exopo 39.5 2.2E+02 0.0047 34.9 11.6 66 580-649 286-355 (754)
275 PF06005 DUF904: Protein of un 39.2 1E+02 0.0022 26.5 6.1 28 666-693 11-38 (72)
276 KOG0248 Cytoplasmic protein Ma 39.2 23 0.00049 42.2 2.8 102 19-125 358-466 (936)
277 KOG2070 Guanine nucleotide exc 39.1 41 0.00089 38.7 4.7 59 598-656 597-658 (661)
278 PF09730 BicD: Microtubule-ass 38.9 3.2E+02 0.0068 33.6 12.3 25 575-599 13-37 (717)
279 PF10805 DUF2730: Protein of u 38.9 3.1E+02 0.0067 25.1 9.8 73 607-697 22-96 (106)
280 KOG0612 Rho-associated, coiled 38.6 3.4E+02 0.0074 35.0 12.6 43 605-647 489-534 (1317)
281 PRK03918 chromosome segregatio 38.5 4.7E+02 0.01 32.5 14.4 25 624-648 348-372 (880)
282 KOG1937 Uncharacterized conser 38.5 3E+02 0.0064 31.7 11.1 127 572-699 283-422 (521)
283 COG3937 Uncharacterized conser 38.3 94 0.002 28.7 6.0 22 675-696 85-106 (108)
284 KOG4643 Uncharacterized coiled 38.2 8.1E+02 0.017 31.3 15.3 120 577-696 59-200 (1195)
285 KOG0250 DNA repair protein RAD 38.1 3.9E+02 0.0084 34.1 13.0 21 580-600 286-306 (1074)
286 TIGR03752 conj_TIGR03752 integ 38.0 2.6E+02 0.0055 32.5 10.8 30 669-698 112-141 (472)
287 KOG4593 Mitotic checkpoint pro 37.8 6.4E+02 0.014 30.7 14.2 114 582-696 248-393 (716)
288 cd00890 Prefoldin Prefoldin is 37.8 2.9E+02 0.0063 25.4 9.7 39 613-651 5-43 (129)
289 PF08232 Striatin: Striatin fa 37.7 1E+02 0.0022 29.6 6.6 53 587-650 23-75 (134)
290 PRK04863 mukB cell division pr 37.5 4.4E+02 0.0095 35.3 14.1 29 674-702 450-478 (1486)
291 TIGR02169 SMC_prok_A chromosom 37.5 5.8E+02 0.013 32.5 15.4 17 181-197 116-132 (1164)
292 PF04111 APG6: Autophagy prote 37.5 4.1E+02 0.0088 29.2 12.1 26 613-638 70-95 (314)
293 TIGR03319 YmdA_YtgF conserved 37.4 6.8E+02 0.015 29.5 14.6 21 617-637 58-78 (514)
294 PF13514 AAA_27: AAA domain 37.3 6.7E+02 0.014 32.4 15.8 131 571-702 231-382 (1111)
295 PF10458 Val_tRNA-synt_C: Valy 37.2 1.3E+02 0.0027 25.1 6.3 64 626-692 2-65 (66)
296 TIGR02169 SMC_prok_A chromosom 37.1 6E+02 0.013 32.4 15.4 19 201-219 109-127 (1164)
297 TIGR01843 type_I_hlyD type I s 37.1 4.8E+02 0.01 28.9 13.1 27 671-697 244-270 (423)
298 PF14362 DUF4407: Domain of un 36.8 5.7E+02 0.012 27.5 15.5 83 610-697 131-213 (301)
299 PRK11281 hypothetical protein; 36.7 4.1E+02 0.0088 34.4 13.4 41 599-639 212-252 (1113)
300 PRK13729 conjugal transfer pil 36.7 98 0.0021 35.8 7.3 62 572-637 56-120 (475)
301 PLN02320 seryl-tRNA synthetase 36.6 1.9E+02 0.004 34.0 9.7 36 666-701 130-165 (502)
302 PF09787 Golgin_A5: Golgin sub 36.6 5.6E+02 0.012 30.0 13.8 99 603-705 214-313 (511)
303 TIGR03007 pepcterm_ChnLen poly 36.5 3.5E+02 0.0076 31.2 12.2 85 604-698 140-229 (498)
304 COG1842 PspA Phage shock prote 36.5 5.2E+02 0.011 27.0 13.6 22 615-636 53-74 (225)
305 PF05557 MAD: Mitotic checkpoi 36.5 37 0.00081 41.4 4.3 79 620-698 453-535 (722)
306 PF04714 BCL_N: BCL7, N-termin 36.2 17 0.00036 29.0 0.8 22 34-55 27-48 (52)
307 PF07246 Phlebovirus_NSM: Phle 36.1 4.3E+02 0.0092 28.4 11.3 85 596-706 155-242 (264)
308 PF10267 Tmemb_cc2: Predicted 36.0 7.1E+02 0.015 28.4 16.9 69 622-703 238-306 (395)
309 TIGR01005 eps_transp_fam exopo 35.8 8.8E+02 0.019 29.7 16.0 43 664-706 286-342 (754)
310 smart00787 Spc7 Spc7 kinetocho 35.8 6.3E+02 0.014 27.8 14.0 21 616-636 174-194 (312)
311 PF05667 DUF812: Protein of un 35.8 4.4E+02 0.0096 31.6 12.8 23 667-689 441-463 (594)
312 PF10146 zf-C4H2: Zinc finger- 35.6 4.6E+02 0.01 27.6 11.6 65 623-697 41-106 (230)
313 KOG4673 Transcription factor T 35.6 4.4E+02 0.0096 32.0 12.2 112 554-701 654-767 (961)
314 PF11932 DUF3450: Protein of u 35.6 1.6E+02 0.0035 30.9 8.5 94 584-681 44-139 (251)
315 PF08687 ASD2: Apx/Shroom doma 35.3 4.3E+02 0.0093 28.4 11.4 97 594-693 108-261 (264)
316 PRK14127 cell division protein 35.3 63 0.0014 30.0 4.5 32 669-700 40-71 (109)
317 PRK11239 hypothetical protein; 35.1 58 0.0013 33.6 4.7 28 669-696 186-213 (215)
318 PRK13182 racA polar chromosome 34.8 2E+02 0.0044 28.9 8.4 29 611-639 82-110 (175)
319 COG1196 Smc Chromosome segrega 34.6 6.7E+02 0.015 32.6 15.2 63 583-645 296-368 (1163)
320 KOG1899 LAR transmembrane tyro 34.3 3.6E+02 0.0077 32.4 11.2 20 667-686 175-194 (861)
321 PF07321 YscO: Type III secret 34.0 4.7E+02 0.01 25.7 13.8 96 583-701 7-102 (152)
322 PF05700 BCAS2: Breast carcino 33.9 5.5E+02 0.012 26.6 16.1 36 664-699 180-215 (221)
323 PF10211 Ax_dynein_light: Axon 33.9 5.2E+02 0.011 26.2 13.5 67 615-697 121-187 (189)
324 PF06698 DUF1192: Protein of u 33.8 1.2E+02 0.0026 25.1 5.4 33 618-650 25-57 (59)
325 KOG0993 Rab5 GTPase effector R 33.7 3.4E+02 0.0074 30.8 10.5 53 626-695 439-491 (542)
326 PF08647 BRE1: BRE1 E3 ubiquit 33.7 3.5E+02 0.0075 24.3 9.0 68 582-649 3-80 (96)
327 KOG1029 Endocytic adaptor prot 33.6 7.8E+02 0.017 30.5 13.9 20 598-617 363-382 (1118)
328 TIGR00606 rad50 rad50. This fa 33.5 7.1E+02 0.015 32.9 15.3 38 664-701 968-1005(1311)
329 PF14389 Lzipper-MIP1: Leucine 33.5 1E+02 0.0022 27.4 5.4 54 584-637 10-77 (88)
330 PF05483 SCP-1: Synaptonemal c 33.4 4.6E+02 0.01 31.8 12.0 78 626-703 673-769 (786)
331 PRK15178 Vi polysaccharide exp 33.4 7E+02 0.015 28.8 13.4 72 581-652 222-310 (434)
332 KOG1118 Lysophosphatidic acid 33.2 7E+02 0.015 27.5 13.1 111 570-697 96-219 (366)
333 PF13514 AAA_27: AAA domain 33.0 6E+02 0.013 32.9 14.4 38 660-697 236-273 (1111)
334 PF03962 Mnd1: Mnd1 family; I 33.0 1.4E+02 0.003 30.3 7.0 18 621-638 110-127 (188)
335 PF12761 End3: Actin cytoskele 32.9 1.7E+02 0.0037 30.0 7.5 27 674-700 161-187 (195)
336 TIGR00606 rad50 rad50. This fa 32.8 5.8E+02 0.013 33.6 14.4 120 570-696 780-918 (1311)
337 PF05565 Sipho_Gp157: Siphovir 32.8 2.9E+02 0.0064 27.2 9.2 66 578-643 22-90 (162)
338 TIGR00414 serS seryl-tRNA synt 32.7 2.9E+02 0.0062 31.6 10.3 35 668-702 71-105 (418)
339 PF12709 Kinetocho_Slk19: Cent 32.5 1.1E+02 0.0024 27.3 5.3 34 610-643 45-78 (87)
340 PF14282 FlxA: FlxA-like prote 32.4 2.9E+02 0.0062 25.3 8.4 60 624-703 22-81 (106)
341 PF07888 CALCOCO1: Calcium bin 32.0 9.4E+02 0.02 28.6 14.8 38 582-619 143-180 (546)
342 KOG0933 Structural maintenance 31.9 6.1E+02 0.013 32.3 13.0 31 667-697 844-874 (1174)
343 PF06705 SF-assemblin: SF-asse 31.9 6.2E+02 0.013 26.5 12.2 97 585-707 30-126 (247)
344 PRK11546 zraP zinc resistance 31.8 1.6E+02 0.0035 28.7 6.9 57 588-649 60-118 (143)
345 PF07957 DUF3294: Protein of u 31.8 1.1E+02 0.0023 31.9 5.9 34 625-658 74-109 (216)
346 PF03148 Tektin: Tektin family 31.8 4.4E+02 0.0095 29.7 11.5 87 612-698 48-148 (384)
347 KOG0993 Rab5 GTPase effector R 31.7 2.6E+02 0.0056 31.8 9.2 86 612-712 105-197 (542)
348 KOG3156 Uncharacterized membra 31.7 6.1E+02 0.013 26.4 12.0 74 625-701 127-202 (220)
349 cd00632 Prefoldin_beta Prefold 31.4 3.7E+02 0.008 24.3 9.0 78 623-700 15-97 (105)
350 COG0419 SbcC ATPase involved i 30.9 3.9E+02 0.0085 33.6 12.1 50 664-713 408-465 (908)
351 TIGR02473 flagell_FliJ flagell 30.8 4.4E+02 0.0096 24.5 10.1 92 608-700 4-102 (141)
352 PRK11020 hypothetical protein; 30.7 1.9E+02 0.0041 27.1 6.7 62 625-701 2-63 (118)
353 KOG2072 Translation initiation 30.7 7.3E+02 0.016 30.9 13.2 62 623-703 672-733 (988)
354 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.7 4.1E+02 0.0088 25.2 9.5 67 583-649 60-126 (132)
355 KOG4095 Uncharacterized conser 30.1 20 0.00043 34.8 0.4 26 34-59 28-53 (165)
356 PF15175 SPATA24: Spermatogene 30.0 5.4E+02 0.012 25.2 11.3 85 629-716 39-130 (153)
357 TIGR03755 conj_TIGR03755 integ 29.8 97 0.0021 35.3 5.8 65 629-694 308-377 (418)
358 PF01920 Prefoldin_2: Prefoldi 29.8 3.8E+02 0.0082 23.6 8.8 86 618-703 9-99 (106)
359 PF07439 DUF1515: Protein of u 29.6 3.6E+02 0.0077 25.1 8.2 63 619-694 6-68 (112)
360 PRK11239 hypothetical protein; 29.4 73 0.0016 32.9 4.3 29 673-701 183-211 (215)
361 PRK10929 putative mechanosensi 28.8 3E+02 0.0065 35.5 10.4 23 665-687 172-194 (1109)
362 KOG1760 Molecular chaperone Pr 28.8 4.3E+02 0.0092 25.2 8.7 80 617-699 26-121 (131)
363 PF04880 NUDE_C: NUDE protein, 28.6 89 0.0019 31.2 4.7 28 670-697 21-48 (166)
364 TIGR01069 mutS2 MutS2 family p 28.6 6.9E+02 0.015 31.0 13.3 58 579-640 512-569 (771)
365 PF11180 DUF2968: Protein of u 28.6 6.6E+02 0.014 25.8 10.9 76 578-653 101-186 (192)
366 PRK12787 fliX flagellar assemb 28.5 2.7E+02 0.0058 27.0 7.7 26 662-687 111-137 (138)
367 PF04880 NUDE_C: NUDE protein, 28.4 61 0.0013 32.4 3.5 23 592-614 3-25 (166)
368 PF15030 DUF4527: Protein of u 27.8 1.4E+02 0.003 31.6 6.0 82 616-701 11-92 (277)
369 TIGR03752 conj_TIGR03752 integ 27.8 3.2E+02 0.0069 31.7 9.4 29 620-648 108-136 (472)
370 KOG0250 DNA repair protein RAD 27.5 6.4E+02 0.014 32.3 12.4 31 667-697 742-772 (1074)
371 KOG2685 Cystoskeletal protein 27.5 9.8E+02 0.021 27.4 13.1 108 582-697 253-375 (421)
372 PF14817 HAUS5: HAUS augmin-li 27.3 1.5E+02 0.0033 35.7 7.1 41 599-639 52-97 (632)
373 PF10234 Cluap1: Clusterin-ass 27.2 2.5E+02 0.0053 30.3 8.0 74 624-697 127-207 (267)
374 PTZ00186 heat shock 70 kDa pre 27.2 2.9E+02 0.0063 33.5 9.6 39 679-717 606-645 (657)
375 PRK12704 phosphodiesterase; Pr 27.1 6E+02 0.013 30.0 11.9 21 617-637 64-84 (520)
376 PRK09841 cryptic autophosphory 27.0 6.2E+02 0.013 31.1 12.5 74 611-693 257-331 (726)
377 KOG4403 Cell surface glycoprot 27.0 9.9E+02 0.021 27.5 12.7 108 580-699 250-366 (575)
378 KOG1029 Endocytic adaptor prot 26.1 9.1E+02 0.02 30.0 12.8 20 620-639 436-455 (1118)
379 PF05837 CENP-H: Centromere pr 25.8 4.9E+02 0.011 23.8 8.8 70 583-652 4-82 (106)
380 PF11285 DUF3086: Protein of u 25.8 90 0.002 33.2 4.3 25 617-641 7-34 (283)
381 PRK13848 conjugal transfer pro 25.8 2.1E+02 0.0046 25.8 5.9 29 624-652 6-40 (98)
382 PF08112 ATP-synt_E_2: ATP syn 25.7 1.4E+02 0.0031 24.0 4.3 32 584-621 17-48 (56)
383 PF05266 DUF724: Protein of un 25.7 7.2E+02 0.016 25.3 12.2 28 669-696 155-182 (190)
384 KOG3156 Uncharacterized membra 25.6 1.4E+02 0.0029 31.0 5.4 60 579-639 124-192 (220)
385 COG3750 Uncharacterized protei 25.6 1.5E+02 0.0032 25.9 4.8 40 583-622 22-68 (85)
386 COG4717 Uncharacterized conser 25.4 6.6E+02 0.014 31.4 11.8 32 584-616 184-215 (984)
387 KOG3433 Protein involved in me 25.3 7.4E+02 0.016 25.3 11.5 64 583-649 75-141 (203)
388 KOG1060 Vesicle coat complex A 25.0 1.4E+03 0.031 28.5 17.5 134 164-301 321-479 (968)
389 PF08458 PH_2: Plant pleckstri 24.7 4.9E+02 0.011 24.3 8.4 38 87-127 69-106 (110)
390 KOG0249 LAR-interacting protei 24.5 7.9E+02 0.017 30.1 11.9 21 671-691 214-234 (916)
391 PF05597 Phasin: Poly(hydroxya 24.2 4.6E+02 0.01 25.2 8.5 31 604-634 37-67 (132)
392 PF10073 DUF2312: Uncharacteri 23.8 2.6E+02 0.0056 24.3 5.9 24 583-606 12-38 (74)
393 PRK11281 hypothetical protein; 23.8 8.9E+02 0.019 31.5 13.2 36 578-614 56-91 (1113)
394 PRK12705 hypothetical protein; 23.7 7E+02 0.015 29.4 11.5 22 618-639 60-81 (508)
395 PRK10361 DNA recombination pro 23.6 1.2E+03 0.027 27.2 15.5 42 593-634 71-112 (475)
396 PF06698 DUF1192: Protein of u 23.4 1.2E+02 0.0027 25.0 3.8 26 668-693 23-48 (59)
397 KOG4348 Adaptor protein CMS/SE 23.2 1.7E+02 0.0037 33.4 6.0 21 628-648 594-614 (627)
398 PRK13729 conjugal transfer pil 23.1 1.9E+02 0.0041 33.5 6.6 23 673-695 104-126 (475)
399 COG5509 Uncharacterized small 22.8 1.8E+02 0.0039 24.2 4.5 35 618-652 29-63 (65)
400 KOG0642 Cell-cycle nuclear pro 22.8 1.2E+02 0.0025 35.6 4.9 101 581-692 33-133 (577)
401 PRK06231 F0F1 ATP synthase sub 22.7 3.5E+02 0.0076 27.7 8.0 26 617-642 144-169 (205)
402 PF02841 GBP_C: Guanylate-bind 22.7 5.9E+02 0.013 27.5 10.2 20 232-251 8-27 (297)
403 PF13166 AAA_13: AAA domain 22.7 1.4E+03 0.03 27.5 14.5 68 623-694 324-391 (712)
404 KOG4673 Transcription factor T 22.2 5.3E+02 0.012 31.3 9.9 88 593-683 541-654 (961)
405 PF10828 DUF2570: Protein of u 22.2 4.4E+02 0.0094 24.2 7.7 31 584-614 27-57 (110)
406 TIGR02338 gimC_beta prefoldin, 22.1 6.1E+02 0.013 23.1 9.2 40 662-701 63-102 (110)
407 PF05529 Bap31: B-cell recepto 22.1 6.4E+02 0.014 25.2 9.7 29 669-697 157-185 (192)
408 KOG0689 Guanine nucleotide exc 21.9 71 0.0015 36.8 2.9 40 86-125 321-361 (448)
409 PF04156 IncA: IncA protein; 21.8 7.9E+02 0.017 24.3 13.8 23 619-641 100-122 (191)
410 PF07544 Med9: RNA polymerase 21.7 4.3E+02 0.0092 23.1 7.2 57 625-695 25-81 (83)
411 PF14197 Cep57_CLD_2: Centroso 21.6 5.1E+02 0.011 22.0 9.0 63 625-700 2-67 (69)
412 PF11853 DUF3373: Protein of u 21.5 1.1E+02 0.0025 35.5 4.4 29 669-697 27-55 (489)
413 PF09727 CortBP2: Cortactin-bi 21.4 4E+02 0.0087 27.3 7.9 47 626-692 139-185 (192)
414 PRK13411 molecular chaperone D 21.3 6.5E+02 0.014 30.5 11.1 26 613-638 521-546 (653)
415 PF15277 Sec3-PIP2_bind: Exocy 21.2 2E+02 0.0044 25.6 5.1 33 89-125 57-89 (91)
416 KOG1832 HIV-1 Vpr-binding prot 21.2 1.2E+02 0.0026 37.7 4.6 8 200-207 1272-1279(1516)
417 COG0172 SerS Seryl-tRNA synthe 21.1 5.3E+02 0.012 29.7 9.6 87 607-699 13-101 (429)
418 KOG4140 Nuclear protein Ataxin 21.1 5.2E+02 0.011 30.1 9.2 31 623-653 290-320 (659)
419 PF04111 APG6: Autophagy prote 21.0 6.8E+02 0.015 27.5 10.2 6 675-680 80-85 (314)
420 PF14282 FlxA: FlxA-like prote 20.9 6.2E+02 0.013 23.1 8.4 59 581-640 18-77 (106)
421 PF00769 ERM: Ezrin/radixin/mo 20.3 4.5E+02 0.0097 27.8 8.4 64 587-650 59-126 (246)
422 PF05667 DUF812: Protein of un 20.3 1.2E+03 0.027 27.9 12.9 32 580-611 326-357 (594)
423 smart00338 BRLZ basic region l 20.2 2.2E+02 0.0047 23.4 4.8 31 670-700 30-60 (65)
424 PF05529 Bap31: B-cell recepto 20.1 8.2E+02 0.018 24.4 10.0 31 664-694 159-189 (192)
425 KOG0971 Microtubule-associated 20.1 9E+02 0.019 30.5 11.4 116 583-706 425-551 (1243)
426 PF10481 CENP-F_N: Cenp-F N-te 20.1 4.5E+02 0.0097 28.4 8.0 84 612-696 27-111 (307)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-46 Score=419.38 Aligned_cols=611 Identities=31% Similarity=0.356 Sum_probs=494.1
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCch-hhhccCcccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 004803 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (729)
Q Consensus 97 ~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~-a~~~g~~~~f~~~~~~~~e~~-~~~~k~k~~~~~~vFG~pL~~ll 174 (729)
..+++.|...+++-.++.+|-.++..+..+||++ +.++||+|+|+.....+..+. .-.+++-.++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4567889999999999999999999999999998 889999999999998877654 56667778889999999998888
Q ss_pred hhCCCCcHHHHHHHHHHHhcCCCcCC---ccccCC-CHHHHHHHHHHHh-cCCccCC--CCCCcc--chhhhHH--HHhh
Q 004803 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEFS--ADEDAH--VIGDCVK--HVLR 243 (729)
Q Consensus 175 ~~~~~VP~il~~~i~~L~~~Gl~~EG---IFR~sg-~~~~i~~L~~~ld-~g~~~~~--~~~d~h--~vA~lLK--~fLR 243 (729)
+..++-|.+..+.+.+|..+|+..|| |-|.++ ++..|+.-...|+ .|...+. ...+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 88899999999999999999999999 999999 7777777777775 5654433 334899 5888888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHhcc--CChhHHH----HHHHHHHHHhhccccccccCCCcc-ch
Q 004803 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~--~~~~~~~~ri~~l~~lIl~~--LP~~n~~----lL~~Ll~~L~~V~~~s~~NkMt~~-NL 314 (729)
.++..+.|..+|..+..+ +...-.+.|+..+...|++. .|.+|+. ++.+|+.++..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999988888777 66666678999999889888 8998887 888899999999999999999999 99
Q ss_pred hhhccc-cccC-CCCCCCCccccc-cCCCCCchHH----HHHHHHHHH-HHHHHHHHHHhhccccCCCCCcccCCCCCCC
Q 004803 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (729)
Q Consensus 315 AivfgP-~Llr-~~~~~~~~le~~-~~~~g~~~~~----~~~a~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~ 386 (729)
+.|++| .|++ |-..+.|.++.. |+..++...+ ++.|...++ .++.+|-.+++.|..||.+.....+..+-.+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 666888988886 9999999999 888877777 5999999999999999999987777665554
Q ss_pred CCCCCC--CCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccCCCCccCCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 004803 387 HVDNSG--SEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (729)
Q Consensus 387 s~~~s~--~e~ssd~~~~~~~d~~~~s~e~e~~~~~d~~~e~~~s~~~s~~s~~~~~d~~~~~~~~~~~s~~~~~~~~~~ 464 (729)
.+..+. +.++.+.+.+...-..-.+-.+..+-..+.++.........+.+..+.+|++.|.+.+.++++.++++.-..
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 444222 133333222222222112222222222222223334466666777788899999999999999998876555
Q ss_pred ccccCCCCCCCCCCCCCCchhHHhhhccccCCCCccccccccccCCCCCCcCccccccccCCCCCCCC-CCCCCCccccc
Q 004803 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (729)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (729)
+.+...++..+...|..... ......+.....+.+++...|+....|+.+.+ +++....+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~d----------------~g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSMD----------------LGGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCcccccccccc----------------ccCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 56666665544333322211 12223355566677788888888888887776 45556777888
Q ss_pred -CCCCCCCCCCCCcccccccCcccCCCCcccCCCCchHHHHHHH-----hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 004803 544 -VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (729)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 617 (729)
.+.+..+...++|...|||+.+.|++.+|++|.+++|.+.||| ++.+|.|+|+||+||+|+|+.+||++++|++
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 4456667778899999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--hCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 618 ~~~~~r~~Le-~~V~~L~~~L~~e~~~~~~Le~~--l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
+++++|.+|| +++.+||.++|.++..|.+...+ +....|.. ...-.|.++++-|++++..|.+ ++|++++.+...
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD-a~lktk~~n~pa 907 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD-AKLKTKTKNTPA 907 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc-ccccccccCCcc
Confidence 9999999999 99999999999999999999987 55555533 3466899999999999999999 999999999999
Q ss_pred HHH--HHHhhhcCCccccccccccccccccccc
Q 004803 695 QLN--QQRQHHYGSLSDACDRYQNVQNHNSQHT 725 (729)
Q Consensus 695 ~l~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 725 (729)
+.+ ++++.+..++.+.....+++++|..|-.
T Consensus 908 ~~stt~~s~~~~~~l~~~~t~~k~ip~~~ekc~ 940 (1100)
T KOG4271|consen 908 RRSTTWESNYFLTPLQDAVTSEKPIPIFLEKCK 940 (1100)
T ss_pred cccchhhhhccCCcccccccCCcccchHHHHHH
Confidence 999 9999999999999999999999866544
No 2
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-40 Score=331.46 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=175.3
Q ss_pred ccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhHHHHhhh
Q 004803 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (729)
Q Consensus 165 vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLRe 244 (729)
+||+||..++. +..||.+|.+|+.||+++|+.+|||||++|+..++++++..++.|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999998 67899999999999999999999999999999999999999999976556788999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccC
Q 004803 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (729)
||+||+|.+.|+.|+.++...+.+.++..++.++ .+||..|+.+|.||+.||++|+.+++.|+||++|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888899999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
++..+ ..+......+..+|++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 98321 01133446678999999999999999863
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=9.6e-40 Score=328.94 Aligned_cols=189 Identities=20% Similarity=0.377 Sum_probs=167.7
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-C-ccCC--CCCCccchhhhHHH
Q 004803 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (729)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-~-~~~~--~~~d~h~vA~lLK~ 240 (729)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+|+++++.|+++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999974 3 2332 23589999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccc
Q 004803 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (729)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (729)
|||+||+||||.++|+.|+.+....+..+++..++.++ .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999999888889999999966 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
+|+|++... . .+.+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~--------------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS--------------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc--------------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999987311 0 1223344567889999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-39 Score=330.44 Aligned_cols=198 Identities=22% Similarity=0.345 Sum_probs=174.7
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC---CCCCCccchhhhH
Q 004803 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (729)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~---~~~~d~h~vA~lL 238 (729)
+++||+||..+++. +..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.++.|.... ....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 46999999999976 4679999999999999999999999999999999999999999996432 3356999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888888999999865 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
||+|+|++..+. . .+.+.....+.+.+|++||+||+.||+++.
T Consensus 161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~~ 203 (203)
T cd04386 161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGEV 203 (203)
T ss_pred ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCCC
Confidence 999999874211 0 111223345688999999999999999863
No 5
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-38 Score=342.13 Aligned_cols=304 Identities=23% Similarity=0.333 Sum_probs=239.3
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCC--CCCceeeeeeCcEEcCCCcceeeccCCcceE
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p--~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~f 91 (729)
.++...+++||||.+.|....++|.|+||++.+.+-.|-.-+-+.++ +.|...++.+..|.-....+ -+|+|||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCF 335 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCF 335 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceee
Confidence 34567899999999999888889999999998864444443333222 23444444455444443322 4789999
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCchhhhccCcccccCCCCccccCccccccCCCCCCCcccccchH
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPIL 171 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~a~~~g~~~~f~~~~~~~~e~~~~~~k~k~~~~~~vFG~pL~ 171 (729)
.+....+. .+.++||-+++++..||.|+..+ .+++.....-...+ -..|.
T Consensus 336 Dve~~erp-gviTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~----------------~~qLd 385 (812)
T KOG1451|consen 336 DVEVEERP-GVITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYK----------------QTQLD 385 (812)
T ss_pred eeeecccC-CeeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhh----------------hhhhh
Confidence 99876555 47999999999999999998643 22332221100000 00111
Q ss_pred HHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC----Cc--cCCCCCCccchhhhHHHHhhhC
Q 004803 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----KT--EFSADEDAHVIGDCVKHVLREL 245 (729)
Q Consensus 172 ~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g----~~--~~~~~~d~h~vA~lLK~fLReL 245 (729)
++ -=.||.+||..|+..|++++|+||..|...+|++|...+-.- +. .....+|+-+|.+.||.|||.|
T Consensus 386 ~i------GF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnL 459 (812)
T KOG1451|consen 386 DI------GFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNL 459 (812)
T ss_pred hh------hHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhC
Confidence 11 235899999999999999999999999999999998765332 22 2235789999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCC
Q 004803 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (729)
Q Consensus 246 PePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~ 325 (729)
|+||+++.++..|+.+++..+.+.|+.+|+.++ .+||..||.+|..|++||.+|+.|+..|.||+.||++||||+|+|+
T Consensus 460 pEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRp 538 (812)
T KOG1451|consen 460 PEPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRP 538 (812)
T ss_pred CchhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCc
Confidence 999999999999999999999999999999966 5999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 326 ~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
.. ..+||+|.++.++-||++||+||+.||...+
T Consensus 539 QE------------------ETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 539 QE------------------ETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred hH------------------HHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 72 2578888888888899999999999998766
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=3.1e-39 Score=326.43 Aligned_cols=191 Identities=23% Similarity=0.425 Sum_probs=168.3
Q ss_pred cccccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchhhh
Q 004803 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (729)
Q Consensus 164 ~vFG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~vA~l 237 (729)
.|||+||++++... ..||.+|.+|++||+++|+.+|||||++|+...++++++.|+.|.. .+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 3599999999999999999999999999999999999999999963 44567899999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004803 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (729)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~--~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (729)
||.|||+||+||+|.+.|+.|+.+... .+...++..++.+| ..||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788888855 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 316 ivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
+||||+|||++.. + + .+++..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~~------~--------~---~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVE------D--------P---ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCC------C--------H---HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999998732 1 1 2234556778899999999999998
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=5.8e-39 Score=321.04 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=166.7
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhh
Q 004803 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (729)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (729)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999885 3334568999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccC
Q 004803 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (729)
||+||||+++|+.|+.+....+..+++..++.+| ..||+.|+.+|++|+.||++|+.+++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888888999999865 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
++... + .+..+....+...+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 123455677888999999973
No 8
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.5e-39 Score=328.05 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=174.9
Q ss_pred ccccchHHHhhhC------CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC---ccCCCCCCccchh
Q 004803 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (729)
Q Consensus 165 vFG~pL~~ll~~~------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~---~~~~~~~d~h~vA 235 (729)
|||+||+.++.+. ..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999763 469999999999999999999999999999999999999999863 2234567999999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004803 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (729)
Q Consensus 236 ~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (729)
++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999865 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 316 ivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
+||||+||++...+... .......+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSKD-----------NESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCCc-----------chhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 99999999987432211 122334455667788999999999999999865
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-38 Score=327.17 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=173.8
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHH
Q 004803 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (729)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~ 240 (729)
++|||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+..+|+.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988876 4679999999999999999999999999999999999999999863 444556799999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccc
Q 004803 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (729)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (729)
|||+||+||||.++|+.|+.+.+..+.++++.+++.++ ..||++|+.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988888889999999866 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccc---ccC--CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 321 LLLRPLLAGECELED---DFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 321 ~Llr~~~~~~~~le~---~~~--~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
+||+........+.. .+. ..|.. .+ ..+.....+..+|.+||+||+.||..+.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~e~~~~~~~v~~lI~~~~~lf~vp~ 218 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKP-DQ--KELSENKAAHQCLAYMIEECNTLFMVPK 218 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCC-cH--HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999986432111000 000 00111 11 1123334467889999999999998643
No 10
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=7.2e-39 Score=319.44 Aligned_cols=176 Identities=21% Similarity=0.348 Sum_probs=164.7
Q ss_pred cccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhHHH
Q 004803 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (729)
Q Consensus 166 FG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lLK~ 240 (729)
||+||..++++. ..||.+|.+|+.||+++|+++|||||++|+..+++++++.|++|......++|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999998763 359999999999999999999999999999999999999999997655667899999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccc
Q 004803 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (729)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (729)
|||+||+||||.++|+.|+.+....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888899999999865 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 004803 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (729)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (729)
+|+.+. .++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 998643 6799999999999986
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-38 Score=319.82 Aligned_cols=190 Identities=22% Similarity=0.305 Sum_probs=165.3
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCC----CCCCccchhhhH
Q 004803 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (729)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~----~~~d~h~vA~lL 238 (729)
++||+||..++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.||+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999863221 346999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
||+|||++..... .+. -.++.+.....+.+|+|||.|
T Consensus 159 ~P~L~~~~~~~~~------~~~------~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------CFS------GTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------cch------HHHHHHHHhhhhhheehhhcC
Confidence 9999999742110 011 123445566677899999986
No 12
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=323.67 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=167.2
Q ss_pred cccchHHHhhhCC------------CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc--CCCCCCc
Q 004803 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (729)
Q Consensus 166 FG~pL~~ll~~~~------------~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~--~~~~~d~ 231 (729)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998742 4999999999999999999999999999999999999999998532 3446799
Q ss_pred cchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccc-----c
Q 004803 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (729)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~-----~ 306 (729)
|+||++||.|||+||+||||.++|+.|+.+....+.+.++..++.++ ..||+.|+.+|+||+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888888888888754 69999999999999999999998764 5
Q ss_pred cCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 307 NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
|||++.|||+||||+|||++..... .+........+|++||+||+.||..+.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~------------------~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPN------------------TGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcc------------------hHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 9999999999999999998742210 112223466899999999999998754
No 13
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=3.6e-38 Score=315.88 Aligned_cols=184 Identities=20% Similarity=0.374 Sum_probs=165.1
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc---CCCCCCccchhhhHH
Q 004803 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVK 239 (729)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~---~~~~~d~h~vA~lLK 239 (729)
++||++|+.+++. +..||.+|.+|++||+++|+.+|||||++|+..+++.+++.|++|... .....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999976 467999999999999999999999999999999999999999998633 234679999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcc
Q 004803 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (729)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfg 319 (729)
.|||+||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.||||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888889999999966 6999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 320 P~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
|+|+|.+... +.+....+++++++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999976311 1234456788999999865
No 14
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.4e-38 Score=316.71 Aligned_cols=190 Identities=21% Similarity=0.353 Sum_probs=168.5
Q ss_pred ccccchHHHhhhC--CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC----CCCCCccchhhhH
Q 004803 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (729)
Q Consensus 165 vFG~pL~~ll~~~--~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~----~~~~d~h~vA~lL 238 (729)
+||+||+..+... ..||.+|.+|+.+|+++|+++|||||++|+..+++++++.+++|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887653 579999999999999999999999999999999999999999986432 2346899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||||.+.|+.|+.+....+..+++..++.++ .+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
||+|+|++..+. ..........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~~-----------------~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDNM-----------------ETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCCH-----------------HHHHHhHHHHHHHHHHHHHhCcccC
Confidence 999999873210 1123345567799999999999998
No 15
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-38 Score=315.31 Aligned_cols=183 Identities=28% Similarity=0.421 Sum_probs=162.9
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc-C--CCCCCccchhhhHHHH
Q 004803 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV 241 (729)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~-~--~~~~d~h~vA~lLK~f 241 (729)
||+||..++++ +..||.+|.+|++||+.+|+++|||||++|+...+++++..+|.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999986 457999999999999999999999999999999999999999998532 2 3456999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcccc
Q 004803 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (729)
Q Consensus 242 LReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~ 321 (729)
||+||+||||+++|+.|+.+....+..+++..++.++ .+||++|+.+|+||+.||++|+.+++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999888899999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 322 Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
|||++... + ..+....+.+.+|++||+|
T Consensus 160 ll~~~~~~-----------~-------~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET-----------G-------NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc-----------h-------HHHHHhHHHHHHHHHHhhC
Confidence 99987321 0 1122344678999999985
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.8e-38 Score=315.68 Aligned_cols=190 Identities=25% Similarity=0.417 Sum_probs=168.3
Q ss_pred CCcccccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCC-CCccchhhh
Q 004803 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGDC 237 (729)
Q Consensus 162 ~~~vFG~pL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~-~d~h~vA~l 237 (729)
++.+||+||+.++++. ..||.+|.+|+.||+++|+++|||||++|+..+++++++.+++|....... .|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5679999999998763 579999999999999999999999999999999999999999996433333 499999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhh
Q 004803 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (729)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (729)
||.|||+||+||+|.+.|+.|+.+.... ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 677889999866 58999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 318 fgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
|||+|+|++... . .+...+.++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~~-~------------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS-M------------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc-c------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987321 0 12345667889999999999999
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-37 Score=315.50 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=162.8
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchhhhHHHHhh
Q 004803 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (729)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (729)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999986 56899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCc
Q 004803 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~------------~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~ 311 (729)
+||+||||+++|+.|+.+.+.. ...+++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2357899999966 69999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
.|||+||||+|||++..+.. .+..+..+.+.+.+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~---------------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDV---------------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCch---------------HHHHHhccchHHHHHHHHhhC
Confidence 99999999999999843221 123344567778999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=9.2e-38 Score=312.39 Aligned_cols=184 Identities=21% Similarity=0.327 Sum_probs=163.9
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhh
Q 004803 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (729)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (729)
||+||+.++..++.||.+|.+|++||+++|+.+|||||++|+..+|+.+++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877899999999999999999999999999999999999999999875 3345578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccC
Q 004803 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (729)
||+||||.++|+.|+.+....+..+++..++.+| ..||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888888999999855 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 004803 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (729)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIe 366 (729)
++... + + +..++...+...+|++||-
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 87321 1 1 2234555667788998873
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-37 Score=314.84 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=167.7
Q ss_pred ccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhHHH
Q 004803 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (729)
Q Consensus 165 vFG~pL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lLK~ 240 (729)
|||+||..++.. ...||.+|.+|+.||++ |+.+|||||++|+..+++.+++.|++|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 46799999999999986 5999999999999999999999999986443 45789999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccc
Q 004803 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (729)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (729)
|||+||+||||.++|+.|+.+....+..+++.+++.+ +.+||+.|+.+|+||+.||++|+.|++.|||++.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLL-TCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 9999999999999999999998888778888888874 469999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
+||++...+. .|... +......++.+|++||+||+.||-.++
T Consensus 158 ~L~~~~~~~~-------~~s~~-------~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-------KMSSS-------TEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-------ccchh-------HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999873211 11100 112234567999999999999998754
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-37 Score=314.34 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=163.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhhCCCCCCChhhH
Q 004803 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (729)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (729)
.+.||.+|.+|++||+++|+++|||||++|+..+++++++.|+.|. ..+....|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4579999999999999999999999999999999999999999996 344556899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccc-----------ccCCCccchhhhccccccC
Q 004803 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 256 ~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~-----------~NkMt~~NLAivfgP~Llr 324 (729)
+.|+.+.... .++++..++.+| .+||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999988765 678899999865 69999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
++..+...+++ ..+.+.....+..+|++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98543322221 122344556678899999999999999865
No 21
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3.9e-37 Score=308.02 Aligned_cols=185 Identities=25% Similarity=0.380 Sum_probs=167.3
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhh
Q 004803 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (729)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (729)
||+||..++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.+++|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3334668999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccC
Q 004803 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (729)
||+||||+++|+.|+.+....+..+++..++.+| ..||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999999888888999999865 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
++.... + +.+++...+...+|++||+.
T Consensus 160 ~~~~~~-------------~---~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTAD-------------P---LQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCCC-------------H---HHHHHHHHHHHHHHHHHhhC
Confidence 873211 1 23456677888999999974
No 22
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.2e-37 Score=316.37 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=161.0
Q ss_pred ccccchHHHhhhC----------------CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC----cc
Q 004803 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (729)
Q Consensus 165 vFG~pL~~ll~~~----------------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~----~~ 224 (729)
|||++|++.++.. +.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999888642 358999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHhccCChhHH
Q 004803 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (729)
Q Consensus 225 ~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~-----------------~~~~~ri~~l~~lIl~~LP~~n~ 287 (729)
....+++|+||++||.|||+||+||||.++|+.|+.+... .+..+++..++.+| .+||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 2356799999999999999999999999999999887642 34578889999865 69999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 288 ~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
.+|+||+.||++|++|++.|||++.|||+||||+||+++... |. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---------~~----------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---------MD----------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---------cC----------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999986311 10 01123456899999999
Q ss_pred ccccC
Q 004803 368 YENIF 372 (729)
Q Consensus 368 ~~~IF 372 (729)
++.+.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 23
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.3e-37 Score=312.57 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=161.8
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchhhhHHHHhh
Q 004803 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (729)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (729)
||+||..++.+ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 57899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCC
Q 004803 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~--------------~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (729)
+||+||||+++|+.|+.+.... +...++..++.+| ..||+.|+.+|+||+.||++|++|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999886531 2245788899855 699999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
++.|||+||||+|||++.... ...++.+....+...+|++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 00123344567788899999986
No 24
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-37 Score=310.14 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=161.4
Q ss_pred ccccchHHHhhh------CCCCcHHHHHHHHHHHhcC-CCcCCccccCCCHHHHHHHHHHHhcCC-ccC---CCCCCccc
Q 004803 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV 233 (729)
Q Consensus 165 vFG~pL~~ll~~------~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~---~~~~d~h~ 233 (729)
|||+||..+++. +..||.+|.+|+.||+++| +.+|||||++|+...++++++.++.|. ..+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999875 3479999999999999987 799999999999999999999999984 222 23579999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCcc
Q 004803 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (729)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~ 312 (729)
||++||.|||+||+||+|.++|+.|..+.... +..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988776 7788999999865 699999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 004803 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (729)
Q Consensus 313 NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (729)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999875 5799999999999986
No 25
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-37 Score=309.60 Aligned_cols=185 Identities=24% Similarity=0.403 Sum_probs=165.7
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc--cC----CCCCCccchhhhH
Q 004803 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EF----SADEDAHVIGDCV 238 (729)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~--~~----~~~~d~h~vA~lL 238 (729)
||+||..++.. +..||.+|.+|++||+++|+.+|||||++|+..+++++++.+++|.. .+ ....|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999999875 45799999999999999999999999999999999999999999852 22 1246999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.++ ++||+.|+.+|+||+.||++|+.+++.|+|++.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999999888888999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
||+|||++..+ +........++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987320 1123445789999999999998
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.6e-37 Score=306.06 Aligned_cols=161 Identities=27% Similarity=0.506 Sum_probs=151.4
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccC-CCCCCccchhhhHHHHhh
Q 004803 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEF-SADEDAHVIGDCVKHVLR 243 (729)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~-~~~~d~h~vA~lLK~fLR 243 (729)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|. ..+ ..+.|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 999999999988899999999999999999999999999999999999999999975 333 245789999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcccccc
Q 004803 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Ll 323 (729)
+||+||+|+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888889999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004803 324 RPLL 327 (729)
Q Consensus 324 r~~~ 327 (729)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.9e-37 Score=311.88 Aligned_cols=187 Identities=21% Similarity=0.312 Sum_probs=158.4
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchhhhHHHHhh
Q 004803 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (729)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (729)
||+||..++.+ .++||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999876 46899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcc
Q 004803 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~---~-------------------~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~ 301 (729)
+||+||||.++|+.|+.+.... + ...++..++.+| ++||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876421 0 012356788855 6999999999999999999999
Q ss_pred ccccccCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 302 ~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
+|++.|+|++.|||+||||+||||...+. ..-++.+........+|++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873211 00122344556778999999974
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=2.2e-36 Score=304.69 Aligned_cols=163 Identities=19% Similarity=0.309 Sum_probs=151.0
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc---CCCCCCccchhhhHHHH
Q 004803 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (729)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~---~~~~~d~h~vA~lLK~f 241 (729)
||+||..++.+. ..||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999997532 24568999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcccc
Q 004803 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (729)
Q Consensus 242 LReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~ 321 (729)
||+||+||||+++|+.|+.+....+...++..++.++ .+||+.|+.+|.||+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999998888888999999865 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004803 322 LLRPLLAG 329 (729)
Q Consensus 322 Llr~~~~~ 329 (729)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2e-36 Score=303.59 Aligned_cols=184 Identities=26% Similarity=0.425 Sum_probs=162.4
Q ss_pred cccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccchhhhHH
Q 004803 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK 239 (729)
Q Consensus 164 ~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~vA~lLK 239 (729)
++||+||..++.+ .++||.+|.+|++||+++|+.+|||||++|+...++++++.++.|.. .+....|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 35799999999999999999999999999999999999999999974 3445689999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
.|||+||+||||.++|+.|+.+++.. +..+++..++.+| +.||+.|+.+|.+|+.||++|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987644 5677888999865 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
||+||+.+.. .+ .+.....++.++++||+|
T Consensus 160 ~P~l~~~~~~----~~---------------~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VE---------------DMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----cc---------------cHHHHHHHHHHHHHHhcC
Confidence 9999998731 11 122345677899999987
No 30
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-36 Score=304.92 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=159.6
Q ss_pred cccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC--ccCC--CCCCccchhhhH
Q 004803 166 VGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV 238 (729)
Q Consensus 166 FG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~--~~~~--~~~d~h~vA~lL 238 (729)
||+||..++.+ ...||.+|.+|++||+.+|+.+|||||++|+..+++.+++.|+++. ..+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 99999999987 3469999999999999999999999999999999999999999874 2222 234899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~---~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (729)
|.|||+||+||||.++|+.|+.+..... ...++..++.+| ++||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 233456677755 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCC-ccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 004803 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (729)
Q Consensus 316 ivfgP~Llr~~~~~~~-~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~ 368 (729)
+||||+||+++..+.. .+....+|....+. ...+...++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVSTV-------DFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccchh-------hHHHHHHHHHHHHHhc
Confidence 9999999999864432 11112223322222 2345668899999865
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-36 Score=306.68 Aligned_cols=186 Identities=23% Similarity=0.381 Sum_probs=156.8
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCC-CCCCccchhhhHHHHhh
Q 004803 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCVKHVLR 243 (729)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~-~~~d~h~vA~lLK~fLR 243 (729)
||.||.+ ++++ +|.+|++||++ |+.+|||||++|+..+++.+++.|++|.. .+. ..+|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888843 3444 78899999998 99999999999999999999999999963 332 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCc
Q 004803 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~------------~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~ 311 (729)
+||+||||.++|+.|+.+.+ ..+.+.++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 234566788888855 69999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
.|||+||||+|+||+..+ ...+ ......++.+|++||+||+.||+.+.
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999986311 1111 12335678999999999999999875
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=354.79 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=244.5
Q ss_pred ceEEEeeeeee----ecC----CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeee-----eeCcEEcCCCcceee-
Q 004803 18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL-----TLGGIDLNNSGSVVV- 83 (729)
Q Consensus 18 ~v~KeG~L~l~----Kkg----~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i-----~L~~I~L~~~~sv~~- 83 (729)
...|+||||+. |+| ...+.|+..|.+|.++.|+.|++.....++......- .-..+.++.|...+.
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 46789999954 443 4477899999999999999999976633322110000 000122222222111
Q ss_pred -ccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCchhhhccC-------------ccc----------
Q 004803 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGI---------- 139 (729)
Q Consensus 84 -~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~a~~~g~-------------~~~---------- 139 (729)
....+.+|.++. .+...+.|+|++.++|-.|+..+++......-...|++. +++
T Consensus 1002 setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~~s 1079 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTVPS 1079 (1973)
T ss_pred hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCCcc
Confidence 122334455543 234679999999999999999997765432222222221 000
Q ss_pred -----------ccCCCCc------------cccCccccccCCCCC-----------------------------CCcccc
Q 004803 140 -----------FRNDTND------------TIEGSFHQWRDKRPV-----------------------------KSLVVG 167 (729)
Q Consensus 140 -----------f~~~~~~------------~~e~~~~~~k~k~~~-----------------------------~~~vFG 167 (729)
|.-.... ....+..++|+|+.- +-.+||
T Consensus 1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence 0000000 001111222222111 124999
Q ss_pred cchHHHhhh--CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc------cCCCCCCccchhhhHH
Q 004803 168 RPILLALED--IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVK 239 (729)
Q Consensus 168 ~pL~~ll~~--~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~------~~~~~~d~h~vA~lLK 239 (729)
|+|...--. .+.||.+|..|+..++.+||.+.||||+|||...|..|.+.++.+.+ .++.+.|+++|.+|||
T Consensus 1160 Vrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK 1239 (1973)
T KOG4407|consen 1160 VRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLK 1239 (1973)
T ss_pred cccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHH
Confidence 999554321 45699999999999999999999999999999999999999999842 2345679999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcc
Q 004803 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (729)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfg 319 (729)
.|||.||+||||..+|..||++-+..+.-+|+..|+.+| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||+||
T Consensus 1240 ~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FG 1318 (1973)
T KOG4407|consen 1240 MFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFG 1318 (1973)
T ss_pred HHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999999999999899999999955 7999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 320 P~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
|+|+|++. |+.. .+...+...++||+.||.+|+++|.+.-
T Consensus 1319 PsiVRts~--------------Dnm~---tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1319 PSIVRTSD--------------DNMA---TMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred cceeccCC--------------ccHH---HHhhcchhhhhHHHHHHhhhhheeccCC
Confidence 99999872 2323 3345667789999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-35 Score=294.33 Aligned_cols=180 Identities=21% Similarity=0.392 Sum_probs=161.7
Q ss_pred ccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc---CCCCCCccchhhhHHHHhh
Q 004803 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR 243 (729)
Q Consensus 167 G~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~---~~~~~d~h~vA~lLK~fLR 243 (729)
|.+|+...-...+||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.+... .....|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7788887777889999999999999999999999999999999999999999886422 2456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcccccc
Q 004803 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (729)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Ll 323 (729)
+||+||||.++|+.|+.+....+...++..++.+| .+||++|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999888899999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 004803 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (729)
Q Consensus 324 r~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~ 368 (729)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0122345778999999998
No 34
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=4.3e-35 Score=294.64 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=157.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhhCCCCCCChhhH
Q 004803 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (729)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (729)
...||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|. .......|+|+||++||.|||+||+||||.++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 4579999999999999999999999999999999999999999885 334456699999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCCCCCCcccc
Q 004803 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (729)
Q Consensus 256 ~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~ 335 (729)
+.|+++.+..+.+.++..++.+| ..||+.|+.+|+||+.||++|+. ++.|||++.|||+||||+||+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999888889999999866 69999999999999999999999 999999999999999999999873211
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004803 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (729)
Q Consensus 336 ~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~I 371 (729)
..++++..+...+.+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 01345566677889999999987653
No 35
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-35 Score=299.30 Aligned_cols=189 Identities=16% Similarity=0.236 Sum_probs=161.0
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcC--CCcC----CccccCCCHHHHHHHHHHHhcCCccC-----CCCCCccc
Q 004803 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (729)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~G--l~~E----GIFR~sg~~~~i~~L~~~ld~g~~~~-----~~~~d~h~ 233 (729)
||+||..++... ..||.+|.+|+.||+++| +..+ ||||++|+...+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999864 579999999999999975 3333 99999999999999999999985332 34689999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHh------cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccccc
Q 004803 234 IGDCVKHVLRELPSSPVPASCCTALLEAYK------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (729)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~l~~~~------~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~N 307 (729)
||++||.|||+||+||+|+++|+.|+.+.. ..+.++|+..++.++ .+||.+|+.+|++|+.||++|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988753 245789999999965 6999999999999999999999887665
Q ss_pred ---CCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 004803 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (729)
Q Consensus 308 ---kMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (729)
||++.|||+||||+|+||....... ....+...+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987432110 11245678999999999999986
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.5e-35 Score=292.11 Aligned_cols=178 Identities=21% Similarity=0.250 Sum_probs=151.9
Q ss_pred cccchHHHhhhC------CCCcHHHHHHHHHHHh-cCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhH
Q 004803 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (729)
Q Consensus 166 FG~pL~~ll~~~------~~VP~il~~~i~~L~~-~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (729)
||+||++++.+. ..||.+|..|+++|.+ +|+.+|||||++|+...++++++.+++|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 899999999999999999999999999987666678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccc--ccccCCCccchhh
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH--AHENRMTPSAVAA 316 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~--s~~NkMt~~NLAi 316 (729)
|.|||+||+||+|.++|+.++.+... ...++.+| .+||+.|+.+|.||+.||+.|+++ ++.|||++.|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886532 23456644 699999999999999999999975 4789999999999
Q ss_pred hccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 317 vfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
||||+|||++..+ +. ..+..+.+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~--------------~~---~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDD--------------PR---VIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCC--------------HH---HHHHccHHHHHHHHHHhcC
Confidence 9999999987321 11 2234556788999999987
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-34 Score=293.64 Aligned_cols=171 Identities=24% Similarity=0.403 Sum_probs=149.5
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHH-HhcC-----CccCCC-CCCccchhhhHHHHhhhCCCCCC
Q 004803 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (729)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~-ld~g-----~~~~~~-~~d~h~vA~lLK~fLReLPePLl 250 (729)
+..|.||.+|++||+++|+.+|||||++|+..+|++++.. ++.+ ..++.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456789999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCCCCC
Q 004803 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (729)
Q Consensus 251 p~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~ 330 (729)
|+++|+.|+.+....+.+.++..++.+| ..||++|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++..+
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 9999999999999988899999999866 69999999999999999999999999999999999999999999987211
Q ss_pred CccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 331 ~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
.+++......+.+|++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 12344566778899999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=3.1e-34 Score=288.36 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=149.8
Q ss_pred hHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhhCCCC
Q 004803 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (729)
Q Consensus 170 L~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPeP 248 (729)
|.+.+...+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 4444444578999999999999999999999999999875 788999999853 23345689999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh-ccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCC
Q 004803 249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (729)
Q Consensus 249 Llp~~l~~~~l~~~~-~~~~~~ri~~l~~lIl-~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (729)
|||+++|+.|+.+.. ..+.++++..++.+|. ..||+.|+.+|+||+.||++|++|+..|+|++.|||+||||+|||++
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 999999999999874 5567788899998552 27999999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 004803 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (729)
Q Consensus 327 ~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~ 368 (729)
.... ....+...+|++||.++
T Consensus 164 ~~~~---------------------~~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 164 PASS---------------------DSPEFHIRIIEVLITSE 184 (200)
T ss_pred cccc---------------------cchhhHHHHHHHHHHHH
Confidence 4311 01234678999999864
No 39
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.98 E-value=2e-32 Score=307.66 Aligned_cols=323 Identities=18% Similarity=0.315 Sum_probs=238.0
Q ss_pred CceEEEeeeeeeecCC--------CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcce--eeccC
Q 004803 17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VVRED 86 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~--------~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv--~~~~~ 86 (729)
+.+...|+||..-... .+..-.++||||.|+.|+||.+.....|.+ .|.+....++ .+.+.
T Consensus 490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd~ 560 (1186)
T KOG1117|consen 490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPDT 560 (1186)
T ss_pred ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCCC
Confidence 4566669999653211 134467899999999999999988776443 3444333221 11121
Q ss_pred ---CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCchhh--------hc-------------cCcccccC
Q 004803 87 ---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL--------VM-------------GHNGIFRN 142 (729)
Q Consensus 87 ---Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~a~--------~~-------------g~~~~f~~ 142 (729)
..++|++..-...+|.|+|-+++.+++..|..+|.++.. |.-+. .. .++++|..
T Consensus 561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhfv--p~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl 638 (1186)
T KOG1117|consen 561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHFV--PLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL 638 (1186)
T ss_pred CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhcC--chHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence 135555554455689999999999999999999988753 32111 11 13577765
Q ss_pred CCCcc--------cc---------------CccccccCCCCCCCcccccc----------------------------hH
Q 004803 143 DTNDT--------IE---------------GSFHQWRDKRPVKSLVVGRP----------------------------IL 171 (729)
Q Consensus 143 ~~~~~--------~e---------------~~~~~~k~k~~~~~~vFG~p----------------------------L~ 171 (729)
+.... .+ ++..+.-++...--..=|+. |.
T Consensus 639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq 718 (1186)
T KOG1117|consen 639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ 718 (1186)
T ss_pred CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence 54321 11 11111111111000011222 22
Q ss_pred HHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC---CCCCCccchhhhHHHHhhhCCCC
Q 004803 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS 248 (729)
Q Consensus 172 ~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~---~~~~d~h~vA~lLK~fLReLPeP 248 (729)
+..-..+.||.||..||.|+.++|+..|||||.+|...++.+|...|-+....+ ..+.-+.+|+++||+|||+|++|
T Consensus 719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp 798 (1186)
T KOG1117|consen 719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP 798 (1186)
T ss_pred hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence 222225679999999999999999999999999999999999999998764322 24467889999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCCC
Q 004803 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA 328 (729)
Q Consensus 249 Llp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~ 328 (729)
|+|.++|..|+++....+.++++..+..+| ..||..||.||+.||.||++|..+++.|+|+++|||+||||+||...-.
T Consensus 799 Lft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgq 877 (1186)
T KOG1117|consen 799 LFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQ 877 (1186)
T ss_pred ccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCC
Confidence 999999999999999999999999999976 5999999999999999999999999999999999999999999986511
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 329 ~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
+.+..+||+.||.+|..||.-++
T Consensus 878 -------------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 878 -------------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred -------------------------chhhhhHHHHHhcCceEEEEecH
Confidence 13566899999999999998665
No 40
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-31 Score=301.67 Aligned_cols=321 Identities=18% Similarity=0.287 Sum_probs=233.1
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCH
Q 004803 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (729)
Q Consensus 34 ~k~WkkRWfVL~g~~L~yYKd~~~~~p~~---g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~ 110 (729)
...|...|..+.++.++||.+...+..-+ ............+..............-+.+......+..|+++..++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 34599999999999999998866543221 111111111122222111101111111233333334467899999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhccCccc------ccCCC---------------------Cc---cccC----------
Q 004803 111 EDLYEWKTALELALAQAPSAALVMGHNGI------FRNDT---------------------ND---TIEG---------- 150 (729)
Q Consensus 111 eE~~eWi~AL~~ai~~aPs~a~~~g~~~~------f~~~~---------------------~~---~~e~---------- 150 (729)
.....|..++..++...|+.+....++.+ -.... .. ++.+
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~ 429 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQ 429 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccchH
Confidence 99999999999999866553322111100 00000 00 0000
Q ss_pred -----------ccccccCCCCC-CCcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHH
Q 004803 151 -----------SFHQWRDKRPV-KSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE 217 (729)
Q Consensus 151 -----------~~~~~k~k~~~-~~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ 217 (729)
.....+.++.. ..++||++|+.+|++. +.||.+|.+|+..|+..|++.+||||++|+...|.+|+..
T Consensus 430 ~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~ 509 (650)
T KOG1450|consen 430 KKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQ 509 (650)
T ss_pred HHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHh
Confidence 00011222222 3789999999999874 5699999999999999999999999999999999999999
Q ss_pred HhcCC-ccC--CCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 004803 218 YEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294 (729)
Q Consensus 218 ld~g~-~~~--~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll 294 (729)
+|... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||..|+.||+||+
T Consensus 510 ~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~lv 588 (650)
T KOG1450|consen 510 SDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYLV 588 (650)
T ss_pred cCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHHH
Confidence 99543 333 33479999999999999999999999999999999999998899999999976 599999999999999
Q ss_pred HHHhhccccccccCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 004803 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (729)
Q Consensus 295 ~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~ 373 (729)
.||++|..|++.|||+.+||||||||+|+.+.... ++ .+..+.....||+.||+++..+|+
T Consensus 589 ~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~~-------~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 589 RHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------SS-------EAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHhccccccccccceEEEeccccccccccc-----------cc-------hhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999976321 01 123456678999999999999996
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=3.8e-31 Score=260.98 Aligned_cols=170 Identities=29% Similarity=0.480 Sum_probs=154.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC--CCCCCccchhhhHHHHhhhCCCCCCChhhHH
Q 004803 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (729)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~--~~~~d~h~vA~lLK~fLReLPePLlp~~l~~ 256 (729)
.||.+|..|+.||+++|+++|||||++|+..+++++++.++.|.... ...+|+|++|++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999987543 6779999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCCCCCCccccc
Q 004803 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (729)
Q Consensus 257 ~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~ 336 (729)
.|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~------ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV------ 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH------
Confidence 9999998888889999999866 699999999999999999999999999999999999999999999873211
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 337 ~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
.......+...+|++||+|
T Consensus 155 ------------~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 155 ------------ASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred ------------HHHHHHHHHHHHHHHHHhc
Confidence 1234556788999999987
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.2e-29 Score=281.04 Aligned_cols=203 Identities=21% Similarity=0.272 Sum_probs=172.5
Q ss_pred CCCCCcccccchHHHhhh----CCCCcHHHHHHHH-HHH-hcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCcc
Q 004803 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAH 232 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~----~~~VP~il~~~i~-~L~-~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h 232 (729)
......|||+++..+... .+.||.++.-+.. +|+ ++|++.|||||++|...+++.+++.||.|.+......|||
T Consensus 140 ls~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH 219 (577)
T KOG4270|consen 140 LSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVH 219 (577)
T ss_pred ccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHH
Confidence 334567999999777653 3447999988888 665 4899999999999999999999999999964433378999
Q ss_pred chhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCcc
Q 004803 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (729)
Q Consensus 233 ~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~ 312 (729)
+||++||.|||+||+|++++.+|++|+.+....+.+++...++.++ .+||+.|+.+|+|+|.||+.|+++++.|||+++
T Consensus 220 ~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~ 298 (577)
T KOG4270|consen 220 CLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR 298 (577)
T ss_pred HHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 9999999999999999999999999999999999999999999854 699999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 004803 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (729)
Q Consensus 313 NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (729)
||||||||+|+|+.. -...++.+....+.+..+|+..|++++..|+....
T Consensus 299 NlAiV~gPNl~~~~~---------------p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 299 NLAIVFGPNLLWMKD---------------PLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELE 348 (577)
T ss_pred hceeEecCCccccCC---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 999999999999873 12333444455556667788888888888887663
No 43
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=7.5e-30 Score=261.91 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=137.7
Q ss_pred CcccccchHHHhhh-----------------------CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHH----HHHHH
Q 004803 163 SLVVGRPILLALED-----------------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRV 215 (729)
Q Consensus 163 ~~vFG~pL~~ll~~-----------------------~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~----i~~L~ 215 (729)
.++||.+|..+..- ...||.+|.+|++||+++|+.+|||||++|+... ++.++
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~ 89 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIR 89 (220)
T ss_pred cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHH
Confidence 45788888776541 1248999999999999999999999999999999 99999
Q ss_pred HHHhcCCccCCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhc-cCChhHHHHHHHHH
Q 004803 216 QEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRIL 294 (729)
Q Consensus 216 ~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~-~LP~~n~~lL~~Ll 294 (729)
+.+|+|.... ...|+|+||++||.|||+||+||||+++|+.|+.+... + . ..++. +++ .||+.|+.+|.||+
T Consensus 90 ~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-~-~---~~~~~-ll~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 90 DALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-N-E---EDKRQ-VIRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-c-H---HHHHH-HHHhhCCHHHHHHHHHHH
Confidence 9999985433 67899999999999999999999999999999998622 2 1 23444 446 89999999999999
Q ss_pred HHHhhccccccccCCCccchhhhccccccCCCC
Q 004803 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (729)
Q Consensus 295 ~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (729)
.||++|+.+++.|+|++.|||+||||+|+|++.
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 999999999999999999999999999999984
No 44
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-30 Score=281.17 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=172.7
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc---cCCCCCCccchhhhH
Q 004803 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDCV 238 (729)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~---~~~~~~d~h~vA~lL 238 (729)
+.||||||..++++. -.||.+|.+++.||+++|++++||||++|...+|+.|++.++..-. ........|+||.+|
T Consensus 298 ~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlL 377 (674)
T KOG2200|consen 298 GGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLL 377 (674)
T ss_pred CceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHH
Confidence 579999999999874 4699999999999999999999999999999999999999887421 224456789999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|+|||+||+|||+.++.+.|+.++......+++++++.+|+ .||.+||.+|+.|+.||++|+.+++.|+||+.|||+||
T Consensus 378 KqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvcm 456 (674)
T KOG2200|consen 378 KQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCM 456 (674)
T ss_pred HHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhh
Confidence 99999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCC----ccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 319 APLLLRPLLAGEC----ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 319 gP~Llr~~~~~~~----~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
||+||........ -+..-. ..|- +.+ ..+....-+..++..||.+++.+|..+.
T Consensus 457 APsLF~l~~~~~d~spr~~~~k~-~~g~-p~~--kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 457 APSLFHLNALKLDSSPRVRQKKS-ETGK-PDQ--KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred cchHHhhccCCCCCCcccccccc-ccCC-Cch--HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999975532111 000000 0000 001 0122233356789999999999998865
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=5.1e-29 Score=243.30 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=151.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc-CCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHH
Q 004803 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (729)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~-~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~l 259 (729)
|.+|..|+.||+++|+.++||||++|+..+++.+++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999754 56778999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCCCCCCccccccCC
Q 004803 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (729)
Q Consensus 260 ~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~ 339 (729)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998888889999999966 59999999999999999999999999999999999999999999987321
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (729)
Q Consensus 340 ~g~~~~~~~~a~~~~~~~~~iVe~LIen 367 (729)
............+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11233455677899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=7.6e-30 Score=288.61 Aligned_cols=185 Identities=21% Similarity=0.384 Sum_probs=163.5
Q ss_pred CCCCCcccccchHHHhh-----hCCCCcHHHHHHHHHHH-hcCCCcCCccccCCCHHHHHHHHHHHhcC-CccC---CCC
Q 004803 159 RPVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF---SAD 228 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~-----~~~~VP~il~~~i~~L~-~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-~~~~---~~~ 228 (729)
..+++.|||.||..-+. +.-++|.+|.+|++||+ .+|+..|||||++|.+..|+.|++.||.+ +.++ ..+
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 34468899987744432 23479999999999999 59999999999999999999999999998 4332 356
Q ss_pred CCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccC
Q 004803 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (729)
Q Consensus 229 ~d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~Nk 308 (729)
.|||+|||+||+|||+||+|||+.++|..|.......+...+...+..+| ..||++|+.+|.+|+.||++|+.++.+||
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li-~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLI-SSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHH-HhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 79999999999999999999999999999999999999999999999977 48999999999999999999999999999
Q ss_pred CCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 309 Mt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
|+++||||||+|+|.+|. .+...+|.||+.||.+..
T Consensus 1052 MnlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred ccccceeeeecccccCcH--------------------------------Hhhhhhccchhhhhccch
Confidence 999999999999999986 335567788999998865
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.4e-28 Score=235.10 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=135.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc--CCCCCCccchhhhHHHHhhhCCCCCCChhhHHHH
Q 004803 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (729)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~--~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~ 258 (729)
|.+|..|++||+++|+.++||||++|+...++++++.++.|... .....|+|+||++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 6778999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCC
Q 004803 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (729)
Q Consensus 259 l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (729)
+.+....+..+++..++.++ ..||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888888899999999965 69999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1e-27 Score=255.19 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=174.4
Q ss_pred CCCCCCCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcC-CCcCCccccCCCHHHHHHHHHHHhcCCccCCCC-CCc
Q 004803 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDA 231 (729)
Q Consensus 157 ~k~~~~~~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~-~d~ 231 (729)
.+.++.+..||+||..+.+. +..+|.+|..|+.+|..+| +.+|||||++++...+.++.+.+++|..+.... -|+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35677899999999888765 4679999999999999999 999999999999999999999999998554444 459
Q ss_pred cchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCc
Q 004803 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (729)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~ 311 (729)
|..|.++|.|||+||+||++.++|..+...... +...+...+++++-.+||+.|+.++++++.||.+|++|+..|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~-~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNV-DKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccc-hHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 999999999999999999999999987776554 3467888888877666999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 004803 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (729)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (729)
.|||+||||+|+|+..... -+...+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 9999999999999873211 1233467889999999999999998763
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1.7e-26 Score=251.23 Aligned_cols=204 Identities=22% Similarity=0.376 Sum_probs=167.9
Q ss_pred CCcccccchHHHhhh-------------CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-----Cc
Q 004803 162 KSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----KT 223 (729)
Q Consensus 162 ~~~vFG~pL~~ll~~-------------~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-----~~ 223 (729)
...+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..++++|++.|+.+ +.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~ 142 (412)
T KOG2710|consen 63 DGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDV 142 (412)
T ss_pred ceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccc
Confidence 355667666555322 234899999999999999999999999999999999999999997 34
Q ss_pred cCCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccc
Q 004803 224 EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH 303 (729)
Q Consensus 224 ~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~ 303 (729)
..+.++++|+||++||.|||+||+||||.++|+.|+..+....+++++..++.++ ..||..|+.+|.+|+.||+.|+.|
T Consensus 143 ~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~-~llp~~nr~~l~~ll~fL~~~a~~ 221 (412)
T KOG2710|consen 143 NDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLI-YLLPKCNRDTLEVLLGFLSVVASH 221 (412)
T ss_pred cccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHH-HhcCccchhHHHHHHhhhhhhhcc
Confidence 5567889999999999999999999999999999999999998889999999866 499999999999999999999999
Q ss_pred cccc-----------CCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 304 AHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 304 s~~N-----------kMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
++.| +|++.|||+||+|+++........ ..++.+-. -......+..++.+||+||+.+|
T Consensus 222 s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~~----~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~~f 291 (412)
T KOG2710|consen 222 AEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSHK----ELSVTGVA------NESESEAIVNFAQMMIENLEALF 291 (412)
T ss_pred cccccccccccccCcccchhhhhhhhcchhhhcccCCCc----cccccccc------chhhHHHHHHHHHHhhhhHHHhh
Confidence 9999 999999999999999995321111 11111111 01112346689999999999999
Q ss_pred CCCC
Q 004803 373 DDES 376 (729)
Q Consensus 373 ~~~~ 376 (729)
..++
T Consensus 292 ~ip~ 295 (412)
T KOG2710|consen 292 QIPP 295 (412)
T ss_pred cCCc
Confidence 9444
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.93 E-value=2e-26 Score=255.83 Aligned_cols=241 Identities=18% Similarity=0.184 Sum_probs=213.8
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhH
Q 004803 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (729)
.+.++.+||.||..+|.+.+ +|..+..++-+|...|.-++||||..++...++++++.++.|..+......+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 34567899999999999877 99999999999999999999999999999999999999999976667778999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||.+|..+|...+|+.|+-.....+.++++..|++ +.++||..|..+|+||+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r-~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIER-QGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHH-HHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 99999999999999999999999999999999999999 45799999999999999999 89999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~s~~~s~~e~ssd 398 (729)
+|+++|+......+++.+++ +++..+++|||+||-.||+++++.. +..++..+...|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhh
Confidence 99999998655544444322 3456789999999999999999655 4555556777788888
Q ss_pred cccccccCCCCCCCCCCCCCCCCC
Q 004803 399 EENLDMKNNGYHDAQNEVDPESDD 422 (729)
Q Consensus 399 ~~~~~~~d~~~~s~e~e~~~~~d~ 422 (729)
-+.++. |+.||+.+++++...|-
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 888887 99999999998886654
No 51
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.91 E-value=1.4e-24 Score=190.90 Aligned_cols=87 Identities=61% Similarity=0.747 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~-~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
+||.+.+++|.+|||||.+||+||++|+++|.|||+||++++|++ ++|++||+++++||+|||+||+||++||++|++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999988 5889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004803 693 HHQLNQQR 700 (729)
Q Consensus 693 ~~~l~~~~ 700 (729)
+++|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 52
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-24 Score=258.54 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=149.6
Q ss_pred ccccchHHHhh-hCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHh
Q 004803 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (729)
Q Consensus 165 vFG~pL~~ll~-~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fL 242 (729)
.||..|..++. ....||.++.+|+.||+.+|+.++||||++|...+++.|...|+.|. .......|+|+++++||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999987 56789999999999999999999999999999999999999999986 45567889999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhh
Q 004803 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (729)
Q Consensus 243 ReLPePLlp~~l~~~~l~~~~~~~~~------~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAi 316 (729)
|.||+|||++..|+.|+.+.+..... +++..+..++ ..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999998873333 4788888854 6999999999999999999999999999999999999
Q ss_pred hccccccCCCC
Q 004803 317 CMAPLLLRPLL 327 (729)
Q Consensus 317 vfgP~Llr~~~ 327 (729)
||||+|+|++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 53
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=4.1e-23 Score=222.08 Aligned_cols=149 Identities=23% Similarity=0.355 Sum_probs=137.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhHHHHhhhCCCCCCChhhH
Q 004803 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (729)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (729)
...||.+|..|+..|+.+|+..+||||++|....+++|++.|-+|+ .......|+|+||++||.|||+|.+||||....
T Consensus 359 aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~ 438 (604)
T KOG3564|consen 359 APMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR 438 (604)
T ss_pred cccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence 3458999999999999999999999999999999999999999997 444567899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCC
Q 004803 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (729)
Q Consensus 256 ~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (729)
.+|+++....+....+.++-..|. .||..||.||.|||-|+++|++ +..|||+..|||.+|||+++.-+.
T Consensus 439 rdf~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v 508 (604)
T KOG3564|consen 439 RDFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV 508 (604)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence 999999999888888888887776 8999999999999999999988 779999999999999999998653
No 54
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=3.7e-18 Score=176.33 Aligned_cols=164 Identities=21% Similarity=0.278 Sum_probs=138.5
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccC--C--CCCCccchhhh
Q 004803 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDC 237 (729)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~--~--~~~d~h~vA~l 237 (729)
..+||.+|+.++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+-|++.|+...-.+ . ...|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 349999999999874 567899999999999999999999999999999999999998864222 1 23588999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc--C-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004803 238 VKHVLRELPSSPVPASCCTALLEAYKI--D-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (729)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~--~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (729)
+|.||||||+||++...|...+++... . +.+.-...+-. |++.||..++.+|..++.||..|..+++.|+|++..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999888887542 2 22223333444 5579999999999999999999999999999999999
Q ss_pred hhhccccccCCCC
Q 004803 315 AACMAPLLLRPLL 327 (729)
Q Consensus 315 AivfgP~Llr~~~ 327 (729)
|.||||.||....
T Consensus 341 s~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 341 SLIFAPLLFFCLD 353 (442)
T ss_pred HHHhhhhHHHhhc
Confidence 9999999987653
No 55
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.73 E-value=3e-18 Score=196.28 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=147.5
Q ss_pred CCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-CccC-CCCCCccchhhhHH
Q 004803 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK 239 (729)
Q Consensus 162 ~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-~~~~-~~~~d~h~vA~lLK 239 (729)
....||.||..+......+|.++.+|+.||+..|+.+|||||++|+......+++.|.+. +.+. ..+..+|++|+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 356999999888887889999999999999999999999999999999999999999873 3333 33567999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhcc
Q 004803 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (729)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfg 319 (729)
.||..||+||+|+.+...|.+++.+.+...++..++..+ ..||+.|+.+|+|++.||.+|+....+|.||..||.|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999855 6999999999999999999999999999999999999998
Q ss_pred cccc
Q 004803 320 PLLL 323 (729)
Q Consensus 320 P~Ll 323 (729)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 56
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.65 E-value=9.8e-16 Score=138.49 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=69.9
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-----CCcceEEE
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLTVL 93 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~-----~Kk~~fvi 93 (729)
|+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|+|..+......+ .++++|.|
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I 70 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTARVEHSEDQAAMVKGPNTFAV 70 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccEEEEccchhhhcCCCcEEEE
Confidence 68999665 7787889999999999999999999987654 34556666432211111 24567776
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
... .|+|+|+|+|++|+.+||.||+..+
T Consensus 71 ~t~---~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 71 CTK---HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred ECC---CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 442 7999999999999999999998765
No 57
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.64 E-value=9.7e-16 Score=155.40 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=143.8
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHH--HHHHhcCCCc--CCccccCCCHHHHHHHHHHHhcCCcc--CCCCCCcc----
Q 004803 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAH---- 232 (729)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i--~~L~~~Gl~~--EGIFR~sg~~~~i~~L~~~ld~g~~~--~~~~~d~h---- 232 (729)
++||+|+.+-+.+ +...|..+.... +++..+.++. -|+||.++-..-+...++.++..... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899998555544 445677776555 5555555544 69999999888898888888775311 11111112
Q ss_pred -------chhhhHHHHhhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccc
Q 004803 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (729)
Q Consensus 233 -------~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~---~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~ 302 (729)
+|+.+++.||++||+||+|..+|+.|+.++.. ...+..+++++.+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999988888773 347889999998776 9999999999999999999999
Q ss_pred cc-------cccCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 004803 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (729)
Q Consensus 303 ~s-------~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~ 375 (729)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||..+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 84 26777 899999999999872 11 1235689999999999999875
Q ss_pred C
Q 004803 376 S 376 (729)
Q Consensus 376 ~ 376 (729)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 58
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.64 E-value=1e-15 Score=139.24 Aligned_cols=91 Identities=29% Similarity=0.482 Sum_probs=65.9
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCc---cee---e---ccCCcce
Q 004803 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG---SVV---V---REDKKLL 90 (729)
Q Consensus 21 KeG~L~l~Kkg~~-~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~---sv~---~---~~~Kk~~ 90 (729)
|+| |+.|+|+. .++|++|||||+++.|+||+++.+..|.| .|+|..+. .|. + .....++
T Consensus 1 KeG--~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G---------~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEG--FMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKG---------EVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred Cce--eEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCc---------EEEeeccccceeEeccCCccccccccce
Confidence 689 55588875 68999999999999999999987765433 34433221 111 1 1112235
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
|.+... +|+|+|+|+|++|+.+||.||++++.
T Consensus 70 F~i~t~---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVTP---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEeC---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 655432 79999999999999999999999986
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.61 E-value=2.6e-15 Score=135.35 Aligned_cols=91 Identities=27% Similarity=0.402 Sum_probs=72.0
Q ss_pred EEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CcceE
Q 004803 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (729)
Q Consensus 21 KeG~L~l~Kkg~---~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~------Kk~~f 91 (729)
.+| |+.|+|+ .+++|++|||+|+++.|+||++.....| ..+.|+|+.+.+|....+ +++||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------~~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------DDCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------CCceEEcccceEEeeccccccccccCcEE
Confidence 479 7778887 7899999999999999999998765442 125688888877655432 23688
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
.+... .|+|||+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 77543 6999999999999999999998763
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.59 E-value=7.5e-15 Score=131.26 Aligned_cols=92 Identities=26% Similarity=0.340 Sum_probs=66.3
Q ss_pred EEeeeeeeecC-C-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEecCC
Q 004803 21 KSGPLFISSKG-I-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (729)
Q Consensus 21 KeG~L~l~Kkg-~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~ 97 (729)
++|||+++.+. + ..+.|++|||||+++.|+||+++.+..+ .+.|.|..+..... ...++++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~---------~~~I~L~~~~v~~~~~~~k~~~F~I~~-- 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKA---------EGLIFLSGFTIESAKEVKKKYAFKVCH-- 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCcc---------ceEEEccCCEEEEchhcCCceEEEECC--
Confidence 68988855332 2 4668999999999999999999876553 23344444332211 234567777764
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
.+.++|+|+|+|++++++||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 23499999999999999999999864
No 61
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.58 E-value=9.1e-15 Score=130.99 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=65.4
Q ss_pred EeeeeeeecCC--CCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 22 SGPLFISSKGI--GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 22 eG~L~l~Kkg~--~~k~WkkRWfVL~g--~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
+|||+ |.|. ..++|++|||||++ +.|+||+++.+.. +++.|+|..+..+.....++..|.+.+
T Consensus 2 ~GyL~--K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t-- 68 (95)
T cd01265 2 CGYLH--KIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS-- 68 (95)
T ss_pred cccEE--EecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc--
Confidence 59666 5543 47899999999984 5899999987655 556677776544333333355666543
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
.+|+|+|+|+|++|+++||.||+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 2799999999999999999999865
No 62
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.58 E-value=8.5e-15 Score=133.81 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=66.7
Q ss_pred EEEeeeeeeecC---CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c------CC
Q 004803 20 FKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (729)
Q Consensus 20 ~KeG~L~l~Kkg---~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~---~------~K 87 (729)
+|+||||++.+| .++++|++|||||+++.|+||+++.+.. .. +.|.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~-----~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GS-----KKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cC-----cceeEECCcceEEEEecCCcCccccccc
Confidence 589988855433 2356999999999999999999876531 11 3455666655443211 1 23
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
+++|.+.+. +++|||+|+|++|+++||.||+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 567766543 689999999999999999999863
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.54 E-value=3e-14 Score=128.09 Aligned_cols=89 Identities=27% Similarity=0.520 Sum_probs=65.1
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec---------cCCcce
Q 004803 22 SGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKLL 90 (729)
Q Consensus 22 eG~L~l~Kkg~~~k~WkkRWfVL~g--~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~---------~~Kk~~ 90 (729)
+|||+ |+|...+.|++|||||.+ +.|+||+++.+..|. +.|+|..++.+... ....++
T Consensus 2 ~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~---------g~I~L~~~~~v~~~~~~~~~~~~~~~~~~ 70 (101)
T cd01235 2 EGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK---------GCIDLAEVKSVNLAQPGMGAPKHTSRKGF 70 (101)
T ss_pred eEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCccc---------eEEEcceeEEEeecCCCCCCCCCCCCceE
Confidence 79555 888889999999999994 599999998766533 34555554433211 123345
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
|.+.. ..|+|+|+|++.+|+.+|+.||+.+|
T Consensus 71 f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 71 FDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 55543 37999999999999999999999764
No 64
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=4.4e-14 Score=132.73 Aligned_cols=99 Identities=27% Similarity=0.491 Sum_probs=72.1
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEecCCC
Q 004803 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR 98 (729)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~~ 98 (729)
.|+|||+ |+|...+.|++|||||.++.|+||+++.+.. +.+.|.|..+..... ...++++|.|.....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVSIREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence 3789666 7877789999999999999999999877654 344455554332221 234567776644322
Q ss_pred ------------------cceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 99 ------------------~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
..++|+|+|+|.+|+.+|+.||+.++...|.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 2368999999999999999999999975543
No 65
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.54 E-value=4.3e-14 Score=125.70 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=67.8
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcce
Q 004803 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (729)
Q Consensus 22 eG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr 101 (729)
+| |+.|.|...++|++|||||+++.|.||+++.+..+ + +.|.|+|..+..+.. +.++..|.|... .++
T Consensus 2 ~G--~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~-----~~G~I~L~~~~i~~~-~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NG--VLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH--G-----CRGSIFLKKAIIAAH-EFDENRFDISVN--ENV 69 (91)
T ss_pred ce--EEEEeccccCCCceEEEEEECCEEEEEecCccCcC--C-----CcEEEECcccEEEcC-CCCCCEEEEEeC--CCe
Confidence 69 55589989999999999999999999999876432 1 345566766544332 334566777432 259
Q ss_pred eEEEEeCCHHHHHHHHHHHHH
Q 004803 102 AFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 102 ty~fqAeS~eE~~eWi~AL~~ 122 (729)
+|+|.|++++|+++|+.||+.
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999974
No 66
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.53 E-value=3.8e-14 Score=142.41 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhcCCCcCCc---cccCCCHHHHHHHHH-HHhcCC--ccC-------CCCCCccchhhhHHHHhhhCCCC
Q 004803 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS 248 (729)
Q Consensus 182 ~il~~~i~~L~~~Gl~~EGI---FR~sg~~~~i~~L~~-~ld~g~--~~~-------~~~~d~h~vA~lLK~fLReLPeP 248 (729)
.+|..|.+.|+.+|+++++| ||..++...++.+.. .|+.+. ... ....|||+++++||.|||.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999 999999999998854 555542 111 23469999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHhccC-ChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCC
Q 004803 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (729)
Q Consensus 249 Llp~-~l~~~~l~~~~~~~~~~ri~~l~~lIl~~L-P~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (729)
+|+. +.|..|...-+..+ ....+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999998643322 22337777664344 78899999999999999999999999999999999999999987
Q ss_pred C
Q 004803 327 L 327 (729)
Q Consensus 327 ~ 327 (729)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 4
No 67
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.51 E-value=4.9e-14 Score=128.10 Aligned_cols=89 Identities=30% Similarity=0.531 Sum_probs=64.8
Q ss_pred EEeeeeeeecC-------CCCCCcEEEEEEEe-CCeEEEEeCCC-CCCCCCCceeeeeeCcEEcCCCcceeecc---CCc
Q 004803 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (729)
Q Consensus 21 KeG~L~l~Kkg-------~~~k~WkkRWfVL~-g~~L~yYKd~~-~~~p~~g~~~~i~L~~I~L~~~~sv~~~~---~Kk 88 (729)
++|||++.--| ..+++|+||||||+ ++.|+||++.. ... +.|.|+|+.|..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47977755333 24789999999998 57888887763 444 45668888877765432 233
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHH
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~ 121 (729)
++|.|.+. .|+|||.|+|++|+++|+.+|.
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 56665443 7999999999999999999986
No 68
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.48 E-value=2e-13 Score=123.88 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=69.3
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~-g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
|+|+| |+.|+|...+.|++|||+|+ ++.|+||++++..... ..++++++.+..|..+.....+.+.|.+....
T Consensus 1 v~k~G--~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEG--WLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEE--EEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999 55588989999999999999 7889999887643321 24467778777655433334455667765211
Q ss_pred ---CcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 ---~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
...| +|+|+|++|+++|+.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 55799999999999999876
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.47 E-value=2.4e-13 Score=123.01 Aligned_cols=92 Identities=28% Similarity=0.395 Sum_probs=67.3
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--Ccc
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKL 89 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~------~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~--Kk~ 89 (729)
.|+|+|||. |. +.|+||||||+++ .|.||++++.....+ ..+.+.|.|..|..+....+ +++
T Consensus 1 ~v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~ 70 (101)
T cd01257 1 DVRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRH 70 (101)
T ss_pred CccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCe
Confidence 478999665 44 6799999999987 799999986532110 11566688888777644322 346
Q ss_pred eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHH
Q 004803 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
+|.|.+. .++|+|.|+|++|+++|+.+|..
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 6666442 58999999999999999999863
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.45 E-value=3.8e-13 Score=123.25 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=61.4
Q ss_pred EeeeeeeecCC----CCCCcEEEEEEEeCCe-------EEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 004803 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (729)
Q Consensus 22 eG~L~l~Kkg~----~~k~WkkRWfVL~g~~-------L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-----~~ 85 (729)
+|||. |+|. ..++|++|||||+++. |.||+++.+.. +.+.|+|..+..+.. ..
T Consensus 2 eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence 69554 6665 3459999999999876 59999987665 344566665443311 11
Q ss_pred --CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 86 --~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
...+.|.+.. ..|+|||.|+|++|+++||.+|+++
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 1223455543 3699999999999999999999864
No 71
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.43 E-value=5.5e-13 Score=117.58 Aligned_cols=90 Identities=22% Similarity=0.445 Sum_probs=61.8
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--CCcceEEEecCC
Q 004803 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPDG 97 (729)
Q Consensus 21 KeG~L~l~Kkg~~-~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~--~Kk~~fvit~~~ 97 (729)
|+|||+ |++.. .+.|++|||+|+++.|+||+++.... ..+ .+.|++..+....... .++++|.|...
T Consensus 1 k~G~L~--kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~-----~~~i~l~~~~v~~~~~~~~~~~~f~i~~~- 70 (94)
T cd01250 1 KQGYLY--KRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYD--NAH-----VKEIDLRRCTVRHNGKQPDRRFCFEVISP- 70 (94)
T ss_pred CcceEE--EECCCcCCCceEEEEEEeCCeEEEEcCCcccc--ccc-----ceEEeccceEEecCccccCCceEEEEEcC-
Confidence 589776 44433 67899999999999999999976531 111 2224443322211112 25677777643
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHH
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
.++|+|+|+|.+++.+|+.||+.
T Consensus 71 --~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 --TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred --CcEEEEECCCHHHHHHHHHHHhc
Confidence 38999999999999999999975
No 72
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=7.7e-13 Score=115.92 Aligned_cols=91 Identities=27% Similarity=0.407 Sum_probs=64.9
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcc
Q 004803 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (729)
++|||+ |++...+.|++|||+|+++.|+||+++.... .. +.+.|.|..+.. .....++++|.+.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~--~~-----~~~~i~l~~~~~-~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR--GK-----PRGTILLSGAVI-SEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCC--CC-----ceEEEEeceEEE-EECCCCCcEEEEEc--CCC
Confidence 479665 6666678999999999999999999987541 01 233444544322 22233356666653 346
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHH
Q 004803 101 RAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 101 rty~fqAeS~eE~~eWi~AL~~a 123 (729)
++|+|+|+|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.36 E-value=3.1e-12 Score=115.25 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=56.6
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEecCCCcceeEEEEeCC
Q 004803 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLKAET 109 (729)
Q Consensus 34 ~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~----~Kk~~fvit~~~~~grty~fqAeS 109 (729)
.++||+|||+|+++.|+||+++.. . +.+.|+|..+..+..-. ...++|.+... .++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECCC
Confidence 478999999999999999997652 2 45567776665543222 12245544332 5899999999
Q ss_pred HHHHHHHHHHHHHH
Q 004803 110 SEDLYEWKTALELA 123 (729)
Q Consensus 110 ~eE~~eWi~AL~~a 123 (729)
+.|+++|+.||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
No 74
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=4.1e-12 Score=118.58 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=67.3
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee------ccCCcceEEE
Q 004803 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (729)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~------~~~Kk~~fvi 93 (729)
...|||.+....++.++|++|||||+|+.|+||+.+.+.. .. .+++.|+|..|..... .-.+++.|.+
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~-----~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RK-----GPTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cC-----CceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 4579888766666789999999999999999999877632 11 2566677776655322 1234455655
Q ss_pred ecC-C---------------Ccce-eEEEEeCCHHHHHHHHHHHHHH
Q 004803 94 FPD-G---------------RDGR-AFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 94 t~~-~---------------~~gr-ty~fqAeS~eE~~eWi~AL~~a 123 (729)
... . ...+ -|+|.|+|.+|+++|+.||+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 321 0 0112 2679999999999999999753
No 75
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=3.2e-12 Score=114.94 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=65.2
Q ss_pred EeeeeeeecCCC-CCCcEEEEEEEeC----CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-cc---CCcceEE
Q 004803 22 SGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-RE---DKKLLTV 92 (729)
Q Consensus 22 eG~L~l~Kkg~~-~k~WkkRWfVL~g----~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~---~Kk~~fv 92 (729)
-|||. |+|+. .+.||+|||+|.+ +.|+||++..+.. +++.|++..+ .|.+ .+ .+++||.
T Consensus 2 ~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~-~V~~v~ds~~~r~~cFe 69 (98)
T cd01245 2 KGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDA-YLYPVHDSLFGRPNCFQ 69 (98)
T ss_pred CCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeecccc-EEEEccccccCCCeEEE
Confidence 58554 77777 8999999999987 8999999988776 4455666665 3222 12 4568888
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHH
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
+..... ..+||++|++ +|+++||.+|+.
T Consensus 70 l~~~~~-~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 70 IVERAL-PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EecCCC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence 865321 2689999999 999999999975
No 76
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.33 E-value=1.5e-11 Score=108.52 Aligned_cols=101 Identities=23% Similarity=0.412 Sum_probs=70.5
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCccee--eccCCcceEEEecC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~--~~~~Kk~~fvit~~ 96 (729)
++++|||+. ++...+.|++|||+|.++.|+||++..... ...+...++|.++.+....... .....+++|.+...
T Consensus 1 ~~~~G~L~~--~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLK--KSSSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEE--EESSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEE--ECCCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 589997774 446678899999999999999999987411 1123334455555443322210 11235577777654
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 97 ~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
.+.+|+|+|+|.+++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24699999999999999999999886
No 77
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.27 E-value=2.9e-11 Score=112.29 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=67.3
Q ss_pred EEeeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc-eeec-cCCcce
Q 004803 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVR-EDKKLL 90 (729)
Q Consensus 21 KeG~L~l~-------Kkg-~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s-v~~~-~~Kk~~ 90 (729)
|+|+|..+ ||. .+.+.|+++||||+|+.|++|||+...... .. ..-.-..|.|..+.. +... ..+++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~-~~-~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS-LS-ETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc-cc-cccccceEEeccceeEeeccccCCCcE
Confidence 68877743 111 125789999999999999999998642211 00 000123466666553 2222 334455
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
|.++ ..+|+.|+|||.+.+||+.|+.+|+.+++
T Consensus 80 F~L~--~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRLR--TADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEE--cCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5554 45689999999999999999999998875
No 78
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=3.2e-11 Score=109.44 Aligned_cols=83 Identities=29% Similarity=0.441 Sum_probs=56.8
Q ss_pred CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEEEecCCCcceeEEEEeCCH
Q 004803 33 GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVLFPDGRDGRAFTLKAETS 110 (729)
Q Consensus 33 ~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--~~Kk~~fvit~~~~~grty~fqAeS~ 110 (729)
..+.|++|||+|+++.|+||+++........... .|++..+...... ..++++|.+.. .++++|+|+|++.
T Consensus 19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l~~--~~~~~~~f~a~s~ 91 (104)
T cd01253 19 SNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRLRL--PDGAEFLFQAPDE 91 (104)
T ss_pred CCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEEEe--cCCCEEEEECCCH
Confidence 3678999999999999999998764321111111 2344332222221 23456677653 4689999999999
Q ss_pred HHHHHHHHHHHH
Q 004803 111 EDLYEWKTALEL 122 (729)
Q Consensus 111 eE~~eWi~AL~~ 122 (729)
+++..|+.+|+.
T Consensus 92 e~~~~Wi~aL~~ 103 (104)
T cd01253 92 EEMSSWVRALKS 103 (104)
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 79
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.7e-11 Score=124.18 Aligned_cols=101 Identities=28% Similarity=0.505 Sum_probs=74.4
Q ss_pred eEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 19 v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
..++|||+ |.|+ +.++||+|||+|+.++||||..-.+..|.| .++|..+.+... ....+++||.+....
T Consensus 260 pdREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~V----edP~kP~cfEly~ps 329 (395)
T KOG0930|consen 260 PDREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREV----EDPKKPNCFELYIPS 329 (395)
T ss_pred ccccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeec----cCCCCCCeEEEecCC
Confidence 45789776 4444 688999999999999999998877776544 335555554442 224567888765322
Q ss_pred C------------cce-------eEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 98 R------------DGR-------AFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 98 ~------------~gr-------ty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
. +|| +|-++|.+.+|+.+|+.+|+.++...|-
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 1 333 6999999999999999999999986664
No 80
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.20 E-value=1.9e-11 Score=131.22 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=140.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC------------------------------------
Q 004803 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK------------------------------------ 222 (729)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~------------------------------------ 222 (729)
..|.++...+.+.+.+|+.++|++|.++.....+++++.-..|+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 46899999999999999999999999988766655554332221
Q ss_pred -----ccCCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 004803 223 -----TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297 (729)
Q Consensus 223 -----~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L 297 (729)
.....++.|.+||++||.|||+||+||++.++-..|..++.........+.++.++ ..||..||.++.+|+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~ll-k~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLL-KILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHH-HhccccchHHHHHHHHHH
Confidence 00012457889999999999999999999999999999998877778888888854 799999999999999999
Q ss_pred hhccccccccCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 004803 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (729)
Q Consensus 298 ~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (729)
-.|....-.|||+..||+|+..|++--+ +.++..|..|+..||++..+
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHHHHH--------------------------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999998876532 25577788899999998876
Q ss_pred ccCC
Q 004803 378 HRCS 381 (729)
Q Consensus 378 ~~~~ 381 (729)
..|.
T Consensus 277 ~~~~ 280 (514)
T KOG4370|consen 277 MVCF 280 (514)
T ss_pred eeee
Confidence 6654
No 81
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.16 E-value=1.2e-10 Score=107.70 Aligned_cols=97 Identities=33% Similarity=0.572 Sum_probs=49.2
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEe-CCeEEEEeCCCCCCCCC--C--ceeeeeeCcEEcCCCcc-ee--------ecc
Q 004803 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNNSGS-VV--------VRE 85 (729)
Q Consensus 21 KeG~L~l~Kkg~~-~k~WkkRWfVL~-g~~L~yYKd~~~~~p~~--g--~~~~i~L~~I~L~~~~s-v~--------~~~ 85 (729)
|+|||| |++.. .+.|++|||+|. ++.|.|||.+....... + ....+..+.+....... .. ...
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689666 77776 889999999999 99999999932211000 0 00000001111111000 00 001
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
..+.+.+.++ .++|+|.|++.+|+.+|+.||+.|
T Consensus 79 ~~~~~~i~T~----~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP----TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S----S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC----CcEEEEEECCHHHHHHHHHHHHhC
Confidence 1112223343 589999999999999999999865
No 82
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.13 E-value=2.7e-10 Score=103.00 Aligned_cols=91 Identities=22% Similarity=0.400 Sum_probs=66.4
Q ss_pred ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEe-cCCCcceeEEEEe
Q 004803 29 SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDGRDGRAFTLKA 107 (729)
Q Consensus 29 Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit-~~~~~grty~fqA 107 (729)
-+...+++||+|||+|+++.|+|||++.+.. +.+.+.+.+.++.+.....+ ..+++++.+. +.....++|+|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence 3445578899999999999999999987643 44555566666666654322 2445655543 4334458999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004803 108 ETSEDLYEWKTALELAL 124 (729)
Q Consensus 108 eS~eE~~eWi~AL~~ai 124 (729)
+|++++.+||.|++.|-
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998763
No 83
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.09 E-value=1.4e-10 Score=134.67 Aligned_cols=147 Identities=22% Similarity=0.294 Sum_probs=129.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccc-cCCCHHHHHHHHHHHhcCCccC--CCCCCccchhhhHHHHhhhCCCC-CCChh
Q 004803 178 DGGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPAS 253 (729)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR-~sg~~~~i~~L~~~ld~g~~~~--~~~~d~h~vA~lLK~fLReLPeP-Llp~~ 253 (729)
..||.++..|+.+++.+|+..+|||| +++....+..++.++.+|.... ..+.+... |+++|.|+|.|.+| +|+++
T Consensus 216 q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e 294 (640)
T KOG3565|consen 216 QFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFE 294 (640)
T ss_pred ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccc
Confidence 35899999999999999999999999 8999999999999999984221 22334445 99999999999999 99999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCC
Q 004803 254 CCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (729)
Q Consensus 254 l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (729)
.|..++.+....+.-+++..++.++. .+|..+..++.+++.|+...+..+..|.|++.|+|+||||.++..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 295 DFGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred cccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 99999999888777777788887664 8999999999999999999999999999999999999999997654
No 84
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=9.5e-10 Score=99.71 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=68.3
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEecCC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~ 97 (729)
.+|+| |+.|.+...+.|+.|||.|-++.|.|++..... .+.. ....+.|++........ ....++.|.|...
T Consensus 2 ~ikeG--~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~---~~~~-y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEG--SVLKISSTTEKTEERYLFLFNDLLLYCVPRKMI---GGSK-FKVRARIDVSGMQVCEGDNLERPHSFLVSGK- 74 (101)
T ss_pred cccce--EEEEEecCCCCceeEEEEEeCCEEEEEEccccc---CCCc-EEEEEEEecccEEEEeCCCCCcCceEEEecC-
Confidence 57999 556888778899999999999999999864321 1111 11233344444222111 1234577877543
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.++|+|+|+|++|+++|+.||+.+|.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 49999999999999999999999985
No 85
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.04 E-value=1.2e-09 Score=96.21 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=59.8
Q ss_pred eeeeeeecCCCCCCcEEEEEEE--eCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcc
Q 004803 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (729)
Q Consensus 23 G~L~l~Kkg~~~k~WkkRWfVL--~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (729)
|||.+ |+....++|++|||+| ..+.|.||+++.+.. .-+.|+|..+. +.... +...+.|.. ..
T Consensus 1 G~llK-krr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a~-is~~~-~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLK-KRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLAV-ISANK-KSRRIDIDS---GD 65 (89)
T ss_pred Cccee-eccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccceE-EEecC-CCCEEEEEc---CC
Confidence 76653 3334578899999999 899999999876542 23456665542 22222 333344432 26
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHH
Q 004803 101 RAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 101 rty~fqAeS~eE~~eWi~AL~~a 123 (729)
.+|+|.|.++++.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999865
No 86
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.03 E-value=7.1e-10 Score=103.51 Aligned_cols=103 Identities=24% Similarity=0.408 Sum_probs=59.1
Q ss_pred EEEeeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCC-----CceeeeeeCcEEcCCCcceeecc-
Q 004803 20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVRE- 85 (729)
Q Consensus 20 ~KeG~L~l~-------Kk-g~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~-----g~~~~i~L~~I~L~~~~sv~~~~- 85 (729)
.|+|||..+ |+ +.+.++|+..|+||+|+.|++|++........ ..+..-+...|.|..+......+
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 379988743 11 12467899999999999999999943211100 01112234457777765543333
Q ss_pred -CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 86 -DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 86 -~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
.++++|.+.+ .+|..|+|||.|.+||.+||.+|..+.
T Consensus 81 ~Kr~~VFrL~~--~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLRT--ADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEEe--CCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 3446666653 569999999999999999999998764
No 87
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.03 E-value=1.3e-09 Score=102.10 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=55.3
Q ss_pred CcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------------cCCcceEEEecCCCcce
Q 004803 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (729)
Q Consensus 36 ~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--------------~~Kk~~fvit~~~~~gr 101 (729)
.|++|||+|+++.|.||+++.+.. +++.|.+.....+... ..+++.|.+... .|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcC---Cc
Confidence 699999999999999999987755 3333444333322211 234566666543 79
Q ss_pred eEEEEeCCHHHHHHHHHHHHHH
Q 004803 102 AFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 102 ty~fqAeS~eE~~eWi~AL~~a 123 (729)
+|.|.|+|+.++.+|+.+|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 88
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.98 E-value=6.6e-09 Score=89.98 Aligned_cols=97 Identities=33% Similarity=0.512 Sum_probs=66.6
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEe
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~----~Kk~~fvit 94 (729)
++++|||+....+ ....|++|||+|.++.|.||++...... .. ....|.|..+....... ..+++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~-----~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YK-----PKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CC-----CceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689977754442 4567999999999999999998765321 11 22335555542221112 245677776
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
.. ++.+|+|+|+|.+++..|+.+|+.++
T Consensus 74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TA--DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 53 23599999999999999999999875
No 89
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.81 E-value=3.1e-08 Score=89.50 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=62.7
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCC--eEE--EEeCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCcceEEEec
Q 004803 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLV--FFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP 95 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k~WkkRWfVL~g~--~L~--yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s-v~~~~~Kk~~fvit~ 95 (729)
|+||||++.++.....|.++||.+.+. .+. -+..... .+.++. ...-..|.|..|.. .....+++|||.++.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~-~~~~g~--v~~~e~~~l~sc~~r~~~~~dRRFCFei~~ 77 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTK-TDMKGA--VAQDETLTLKSCSRRKTESIDKRFCFDVEV 77 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccc-cccCcc--cccceEEeeeeccccccCCccceeeEeeee
Confidence 589999998877777899999999875 321 2222110 011111 00111234444333 223468899999976
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHH
Q 004803 96 DGRDGRAFTLKAETSEDLYEWKTALE 121 (729)
Q Consensus 96 ~~~~grty~fqAeS~eE~~eWi~AL~ 121 (729)
..+. .+++|||+++.++..||.|+.
T Consensus 78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 6544 479999999999999999985
No 90
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.80 E-value=2.9e-08 Score=87.74 Aligned_cols=99 Identities=32% Similarity=0.458 Sum_probs=73.4
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEec-CC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~-~~ 97 (729)
|++.|||-+..-|..+..=|.|||||+..+|+||++..+..++ ..++|.++.+.....- -..+++||.+.. ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~k----yilpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKK----YMLPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeeccccccccc----ceeeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 5788988776665545556999999999999999998776643 4668888877764431 135668887763 22
Q ss_pred ----CcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 ----RDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 ----~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
++-++.-|+|+|.++++.|...+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 23468889999999999999887544
No 91
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.75 E-value=9.1e-09 Score=108.70 Aligned_cols=108 Identities=18% Similarity=0.321 Sum_probs=84.1
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~-g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fv 92 (729)
.....|+|+| |++|+|...++|+.|||+|. ++.|.-|+.++... +.. -.+|..+.+..|..+.....++..|+
T Consensus 10 ~~~~~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~-~~~---p~pLNnF~v~~cq~m~~erPrPntFi 83 (516)
T KOG0690|consen 10 MSQEDVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV-QPT---PEPLNNFMVRDCQTMKTERPRPNTFI 83 (516)
T ss_pred cchhhhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccC-CCC---cccccchhhhhhhhhhccCCCCceEE
Confidence 4566899999 66699999999999999996 57899998875432 111 23788888888877666666777776
Q ss_pred E-ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 93 L-FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 93 i-t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
| +..+..-...+|.+++.+++++|+.||+.+....
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 6 4555556778899999999999999999887644
No 92
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.72 E-value=4.5e-08 Score=83.86 Aligned_cols=93 Identities=31% Similarity=0.538 Sum_probs=61.8
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--CcceEEEecCCC
Q 004803 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~--Kk~~fvit~~~~ 98 (729)
++|||+....+. ...|++|||+|.++.|.+|+...... ... +.+.|.+..+........ ..++|.+...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468666433332 36799999999999999998876531 011 223344444222222222 4567777654
Q ss_pred cceeEEEEeCCHHHHHHHHHHHHH
Q 004803 99 DGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 99 ~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
+++.|+|+|+|..++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 248999999999999999999975
No 93
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.70 E-value=1.5e-07 Score=81.21 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=62.6
Q ss_pred EeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCc
Q 004803 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (729)
Q Consensus 22 eG~L~l~Kkg~--~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (729)
+|||....... ....|++|||+|.++.|+||+.+....+.. ..+++..+.+..... ....+++|.+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 57665433332 247899999999999999999987654221 123343333222110 0124567777653213
Q ss_pred ceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 100 GRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 100 grty~fqAeS~eE~~eWi~AL~~a 123 (729)
.+.|+|+|+|.+++..|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999853
No 94
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.69 E-value=1.5e-08 Score=90.16 Aligned_cols=98 Identities=19% Similarity=0.385 Sum_probs=67.6
Q ss_pred EEEeeeeeeecCC-CCCCcEEEEEEEeCCe-----EEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccC
Q 004803 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (729)
Q Consensus 20 ~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~-----L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-------~~~ 86 (729)
.++|||| +.|+ .++.||||||+|.+-+ +.-|+.++. .+.-.+-|.|+.+.-+..... -..
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899777 7766 6999999999999753 334444332 233455788888877654321 123
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.+++|-.. +.|-...|..+++.|+.-|+.||-+|..++
T Consensus 76 g~~ff~av---kegd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAV---KEGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhhee---ccCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 44555433 237889999999999999999999887543
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.52 E-value=9.2e-08 Score=108.35 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=139.0
Q ss_pred CCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHH----HH-HHHhcCCccCCCCCCccch
Q 004803 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR----RV-QEYEQGKTEFSADEDAHVI 234 (729)
Q Consensus 160 ~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~----L~-~~ld~g~~~~~~~~d~h~v 234 (729)
......||+||+..|.+.+.+|..+......|...+..++++||..-...-+.+ .. +....|.........+|.+
T Consensus 411 ~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ta 490 (741)
T KOG4724|consen 411 ELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTA 490 (741)
T ss_pred hhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHH
Confidence 345678999999999999999999988888899999999999998544333322 22 2223366666667799999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHhccCChhHHHHHHHHHHHHhhcccccccc
Q 004803 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (729)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~-------lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~N 307 (729)
++++|.|+|.+|..++..+++.+++++.....++++.++++. .+....|..+..+....+.-.+.+..++..+
T Consensus 491 asv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~ 570 (741)
T KOG4724|consen 491 ASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEET 570 (741)
T ss_pred HHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccc
Confidence 999999999999999999999999999999998899999986 1346889998888888888888889999999
Q ss_pred CCCccchhhhccccccCCC
Q 004803 308 RMTPSAVAACMAPLLLRPL 326 (729)
Q Consensus 308 kMt~~NLAivfgP~Llr~~ 326 (729)
.|+..|++.|..|+++...
T Consensus 571 s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 571 SNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccccCCCCCccccchh
Confidence 9999999999999998754
No 96
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.52 E-value=9.1e-07 Score=80.06 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=58.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (729)
++++|+|. |.+. ...|.|+||...+..||+.+...... +-.....++|.++.+..... ....+++|.|...
T Consensus 2 ~ikEG~L~--K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~~-~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLL--KLSK-KGLQQRMFFLFSDLLLYTSKSPTDQN-SFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEE--EEeC-CCCceEEEEEccceEEEEEeecCCCc-eEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 68999665 4433 23577666666665555544321110 00112233444444332111 1134578887643
Q ss_pred cceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 99 ~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+.|.|+|.|++|+.+|+.+|+.+|.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999985
No 97
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.50 E-value=1.3e-06 Score=80.54 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=71.8
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCC--CCceeeeee--CcEEcCCCcc--ee--eccCCcceE
Q 004803 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTL--GGIDLNNSGS--VV--VREDKKLLT 91 (729)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~--~g~~~~i~L--~~I~L~~~~s--v~--~~~~Kk~~f 91 (729)
..+|||.+.+.++..++|+++|+||.+..|++|..+.+...+ ......+++ +.+.+...+. +. ...+-+++|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 368988888887767799999999999999999976654332 233344455 3455543322 11 122334667
Q ss_pred EEec----CCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 92 vit~----~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
.|+. ....+.+.||-|++..|.+.|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 6654 2234689999999999999999999864
No 98
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.46 E-value=6.6e-08 Score=112.49 Aligned_cols=95 Identities=26% Similarity=0.506 Sum_probs=73.2
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee---c-cCCcc
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R-EDKKL 89 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g--~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~---~-~~Kk~ 89 (729)
..+-+.+|||| |+|...|.||.|||||.. ..|+||.+-.++.|+ |.|+|....+|.. + .+.|-
T Consensus 1631 teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pk---------G~IdLaevesv~~~~~k~vdekg 1699 (1732)
T KOG1090|consen 1631 TENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPK---------GCIDLAEVESVALIGPKTVDEKG 1699 (1732)
T ss_pred ccccCcccchh--hcchhhcccccceeEecCCccceeeeccccccccc---------chhhhhhhhhhcccCccccCccc
Confidence 34456699887 999999999999999986 699999998887744 4466666555433 1 23445
Q ss_pred eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
+|.+... .|+|-|+|.+....++|+..|+.++
T Consensus 1700 ffdlktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1700 FFDLKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeeeehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 5666443 6999999999999999999999876
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.45 E-value=4.3e-07 Score=82.62 Aligned_cols=95 Identities=25% Similarity=0.373 Sum_probs=59.6
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCc-EEcCCC--cce-----eeccCCcceEE
Q 004803 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNS--GSV-----VVREDKKLLTV 92 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~-I~L~~~--~sv-----~~~~~Kk~~fv 92 (729)
.+|+||++.-| .++|||+||+|++.-|+|+-..+...+. +|.. +.+... ... .-.....++|+
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~sr-------dL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~ 72 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTR-------DLACLNLLHGHNVYTGLGWRKKYKSPTDYCFG 72 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHH-------HHHHHHhcccCcEEEEechhhccCCCCCceEE
Confidence 37999976655 5789999999999999887544322211 1111 111111 111 11123447888
Q ss_pred EecCC-Cc---ceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 93 LFPDG-RD---GRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 93 it~~~-~~---grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
+.+.. .. .-..+|||+++..+..|+.|||=+.
T Consensus 73 ~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 73 FKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred EeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 86532 11 2368999999999999999998654
No 100
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.37 E-value=4.6e-07 Score=105.88 Aligned_cols=104 Identities=25% Similarity=0.418 Sum_probs=77.3
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-------CCc
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------DKK 88 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~-------~Kk 88 (729)
.-.|.--|||++..-+.++..|+||||+|.|+.+.|+|.+.+...+. +++.|+|+.|++-.... ..+
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~------Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKV------PIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccC------cceeeehhhhhccccccchhhhccCCc
Confidence 34577789999888888888999999999999999999988765332 78889999988732221 122
Q ss_pred ceEEEec----CCC-----cce-eEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 LLTVLFP----DGR-----DGR-AFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~~fvit~----~~~-----~gr-ty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.|++.+. .++ -.| ...|.|+|.++++.|+.+|..++.
T Consensus 1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 3344321 011 112 688999999999999999999875
No 101
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.32 E-value=6.6e-06 Score=74.87 Aligned_cols=103 Identities=13% Similarity=0.279 Sum_probs=69.0
Q ss_pred EEeeeeeeecCCC--CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCc-EEcCCCcc--ee--eccCCcceEEE
Q 004803 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS--VV--VREDKKLLTVL 93 (729)
Q Consensus 21 KeG~L~l~Kkg~~--~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~-I~L~~~~s--v~--~~~~Kk~~fvi 93 (729)
.+|||-+.+.+.. .++|++.|+||.+..|++|..+.+...+ .+...++++. +.++..+. +. ...+-+++|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~-~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENS-TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCC-CcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 4897766666544 4689999999999999999987654321 2333344332 33333222 21 12334467777
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+.. ..+++.||-|++..|.+.|+.+|.+-|.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 653 3469999999999999999999988763
No 102
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.18 E-value=8.1e-06 Score=91.15 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=117.1
Q ss_pred cHHHHHHHHHHHhcCCCcCCcc---ccCCCHHHHHHHHHHH-hcCCcc----------CCCCCCccchhhhHHHHhhhCC
Q 004803 181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP 246 (729)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIF---R~sg~~~~i~~L~~~l-d~g~~~----------~~~~~d~h~vA~lLK~fLReLP 246 (729)
=.+|..|...|..+|+++++|| |..-+...++.+...| ..+... .....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478899999999999999998 6777788887777654 433311 1234699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCC
Q 004803 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (729)
Q Consensus 247 ePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP-~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~ 325 (729)
..+|+++.|..|...-...+ -...++..+|-..|| +.+..++..++.+|..|+.|+..|+|+..-|+-.+|+-+|..
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999987643322 234556666666775 666789999999999999999999999999999999999987
Q ss_pred CCC
Q 004803 326 LLA 328 (729)
Q Consensus 326 ~~~ 328 (729)
...
T Consensus 167 ~~~ 169 (420)
T PF08101_consen 167 PDF 169 (420)
T ss_pred CCc
Confidence 743
No 103
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.11 E-value=2e-05 Score=71.80 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=59.0
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCC-eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEe
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~-~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (729)
...++++|++. |+.+.. +++|||+|+++ .|+|+...... .-|.|.++....+.... .+.|++.+
T Consensus 10 ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~-~~~F~I~t 74 (104)
T PF14593_consen 10 GELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKS-FKTFFIHT 74 (104)
T ss_dssp T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECS-SSEEEEEE
T ss_pred CCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEcc-CCEEEEEC
Confidence 67899999666 444333 89999999987 66666443221 23568888766655543 34567777
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+ +|+|+|... ...+..|+.+|+.+..
T Consensus 75 p----~RtY~l~d~-~~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 75 P----KRTYYLEDP-EGNAQQWVEAIEEVKK 100 (104)
T ss_dssp T----TEEEEEE-T-TS-HHHHHHHHHHHHH
T ss_pred C----CcEEEEECC-CCCHHHHHHHHHHHHH
Confidence 6 799999984 5668889999999875
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.93 E-value=2e-05 Score=90.53 Aligned_cols=114 Identities=27% Similarity=0.402 Sum_probs=74.6
Q ss_pred CCceEEEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-----cCC
Q 004803 16 SNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDK 87 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~---~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-----~~K 87 (729)
...|.|+|.+..+.+|. +.+.+|||||-|+...|.|.|++... +...|.+.+...|..- ..+
T Consensus 562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~k 631 (800)
T KOG2059|consen 562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMK 631 (800)
T ss_pred CCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCC
Confidence 34566666555443332 24678999999999999999997653 2444666655443211 123
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCchhhhccCcccccCCC
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~a~~~g~~~~f~~~~ 144 (729)
+.+.||.. .|+.||||.+-.|.++|+.+|+++-..+++ ....-+.+.|+.+.
T Consensus 632 nv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~-rLas~HPgaF~s~~ 683 (800)
T KOG2059|consen 632 NVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQN-RLASYHPGAFRSDS 683 (800)
T ss_pred ceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcc-hhhhcCCcccccCc
Confidence 34455554 389999999999999999999998754332 11123456677664
No 105
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=9.5e-06 Score=90.70 Aligned_cols=121 Identities=28% Similarity=0.381 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCceEEEeeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCC
Q 004803 7 PFERPRPGASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78 (729)
Q Consensus 7 ~~~~~~~~~~~~v~KeG~L~l~-------Kk-g~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~ 78 (729)
|.-...+-++-.+.|.|+|-.+ || -.++++||..|.+|+|..|||-|++-.. + . .+-.-+|.+.
T Consensus 494 pfldv~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p---~-k----alse~~lkna 565 (774)
T KOG0932|consen 494 PFLDVPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKP---G-K----ALSESDLKNA 565 (774)
T ss_pred ccccCCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCc---c-c----chhhhhhhhh
Confidence 3444445567778999966532 11 2347789999999999999999875321 1 1 1222222222
Q ss_pred cce------eeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh--cCCchhhhcc
Q 004803 79 GSV------VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA--QAPSAALVMG 135 (729)
Q Consensus 79 ~sv------~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~--~aPs~a~~~g 135 (729)
.+| ...+..|..||+.+++-+.|+|+|||.+.+||+.|+..|.-+.+ .+|.-++..|
T Consensus 566 vsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfPaaV~ 630 (774)
T KOG0932|consen 566 VSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFPAAVG 630 (774)
T ss_pred hhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 221 11233333455555667799999999999999999999987654 4454333333
No 106
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.69 E-value=7.1e-05 Score=83.52 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=62.2
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-----cCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDKKLL 90 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-----~~Kk~~ 90 (729)
.+...+.|+||++..| +|+|||.||||+..-|||+-..+...|+.-. .+..+.-.+......+ ....++
T Consensus 314 ~~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq----~l~~~~~snVYt~i~~rKkyksPTd~~ 387 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQ----CLADLHSSNVYTGIGGRKKYKSPTDYG 387 (622)
T ss_pred CCCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhH----HHHhcccCceEEeecchhccCCCCCce
Confidence 3446788999865554 6889999999999999888554443332110 1111111111111111 122356
Q ss_pred EEEecCC-Ccc--eeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 91 TVLFPDG-RDG--RAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 91 fvit~~~-~~g--rty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
|-|.+.. ++. -.-+|||+++.-+..|+.||+-+..
T Consensus 388 f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 388 FCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred EEeeeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 6665421 122 2468999999999999999986543
No 107
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.64 E-value=0.00021 Score=83.60 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=72.9
Q ss_pred CceEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceE
Q 004803 17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLT 91 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg-~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~----~Kk~~f 91 (729)
..+.++||||.-... .++.--++|||||.+..|.|||.++... .++++...+..++-|.... ..+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 457899999965443 3344569999999999999999975432 2345544455444443322 233456
Q ss_pred EEecC--CCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 92 VLFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 92 vit~~--~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
++... ....+...|.|-|.+|...|+.||+.|+.+.
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 66543 2345678999999999999999999999865
No 108
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.59 E-value=0.00019 Score=65.75 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=56.2
Q ss_pred CCCCcEEEEEEEeCCeEEEEeCCCCCCC-CCCceeeeeeC-----cEEcCCCcceeeccCCcceEEEecCCCcceeEEEE
Q 004803 33 GWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLG-----GIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLK 106 (729)
Q Consensus 33 ~~k~WkkRWfVL~g~~L~yYKd~~~~~p-~~g~~~~i~L~-----~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fq 106 (729)
..+.|+.+|++|++..|++|+..+.... ...+....+|. .+........ ...+.+||.+..... -..+||.
T Consensus 15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~--~~~~~~~F~irtg~~-vesh~fs 91 (108)
T cd01258 15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL--NDQRDNCFLIRTGTQ-VENHYLR 91 (108)
T ss_pred cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc--CCCCceEEEEEcCCc-eeeEEEE
Confidence 4688999999999999999998765321 11122122222 1111111100 124557888876432 3899999
Q ss_pred eCCHHHHHHHHHHHHH
Q 004803 107 AETSEDLYEWKTALEL 122 (729)
Q Consensus 107 AeS~eE~~eWi~AL~~ 122 (729)
.++..|+..|..||..
T Consensus 92 VEt~~dL~~W~raiv~ 107 (108)
T cd01258 92 VETHRDLASWERALVR 107 (108)
T ss_pred ecCHHHHHHHHHHHhc
Confidence 9999999999999863
No 109
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.56 E-value=0.00077 Score=61.64 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=62.2
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
.++++|-|. |.. ++.-+.|||.|=.+.|.|-+-..... +-.....++|.++.+.+... ....+..|.|...
T Consensus 3 ~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~~-~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISKK-KYNKQHILPLEGVQVESIED---DGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCCc-eeeEeeEEEccceEEEecCC---cccccceEEEecC-
Confidence 578899665 332 45568899999999998854311100 00112234555555443221 1122345555432
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.+.|.++|+|++|..+|+.+|..|+.+
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999864
No 110
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.52 E-value=0.00086 Score=62.10 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=65.5
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCC-CC--Ccee----eeeeCcEEcCCCcceeeccCCcc
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-QR--GGEV----NLTLGGIDLNNSGSVVVREDKKL 89 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p-~~--g~~~----~i~L~~I~L~~~~sv~~~~~Kk~ 89 (729)
+..+++|-| .|-....+.++.|+|.|=++.|.|.+....... .| +..+ .+++..+.+..... .+.-++
T Consensus 2 ~elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kn 76 (112)
T cd01261 2 NEFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKN 76 (112)
T ss_pred ccccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCc
Confidence 356889955 454444567899999999999999986543111 11 1111 12333444432211 112245
Q ss_pred eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.|.|... +++.|.|+|.|+++..+|+.+|..++.+
T Consensus 77 aF~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 77 AFEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred eEEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 6666542 2578999999999999999999988753
No 111
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.51 E-value=0.00022 Score=81.66 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeC-CCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKN-DPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLT 91 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd-~~~~~p~~g~~~~i~L~~I~L~~~~sv~~--~~~Kk~~f 91 (729)
....+.+.|||+ +.+... .|++|||.+.++.+..... .+........ .+...++..+..+.. ...+.++|
T Consensus 373 v~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~ 445 (478)
T PTZ00267 373 VTSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQL 445 (478)
T ss_pred ecCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceE
Confidence 345688999665 555544 4999999999876655433 2221100001 111223333333311 12345677
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+. .+.++.++|.|++.+++++|+.+|+.++.
T Consensus 446 ~i~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 446 VLW--FNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEE--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 773 34588999999999999999999999874
No 112
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.51 E-value=0.00033 Score=64.37 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=58.6
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccCCcceEE
Q 004803 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLLTV 92 (729)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-------~~~Kk~~fv 92 (729)
+|+|||- ---..-+.|||+|++|+...|.+|+++...+ ..+.|.|....+|.. .....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4789663 1111235699999999999999999987655 233344443333321 124568998
Q ss_pred EecCCCcceeEEEEeC--------------------CHHHHHHHHHHHHHH
Q 004803 93 LFPDGRDGRAFTLKAE--------------------TSEDLYEWKTALELA 123 (729)
Q Consensus 93 it~~~~~grty~fqAe--------------------S~eE~~eWi~AL~~a 123 (729)
|.+. ..+||...+ .....+-|-.||+.|
T Consensus 70 i~T~---~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTT---TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEec---CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 8763 688998774 234568899888754
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.32 E-value=0.00011 Score=88.26 Aligned_cols=99 Identities=21% Similarity=0.360 Sum_probs=69.9
Q ss_pred CceEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEec
Q 004803 17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg-~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~ 95 (729)
......|||| ++. ...+.|+||||-..++.+.|+..-..... .+...|..|.+..+.. ..++++||.|+.
T Consensus 272 ~~~~~~~~l~--~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS 342 (785)
T KOG0521|consen 272 LGYRMEGYLR--KKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS 342 (785)
T ss_pred chhhhhhhhh--hhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec
Confidence 3455566555 443 24789999999999999988877544321 2233444455444322 236888998765
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 96 ~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
..++|.|||+++.+...|+.+|++.+..+
T Consensus 343 ---~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 ---PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred ---CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998743
No 114
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.69 E-value=0.0094 Score=52.73 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=55.1
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCC-CcceeeccCCcceEEEecCC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~-~~sv~~~~~Kk~~fvit~~~ 97 (729)
+++.|.++ |+.+. .+++|=++|++.--.+|-|..... .-+.|.++. +..+... ..+.|++.++
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~-~~~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVK-NSSHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEe-cCccEEEECC--
Confidence 46788554 44433 479999999986555555543222 234466665 3333333 3345677776
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
+|+|+|. +-......|+.+|..+
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHH
Confidence 8999995 4458899999999876
No 115
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.55 E-value=0.032 Score=52.56 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=56.0
Q ss_pred eeeeeecCC---CCCCcEEEEEEEeC--CeEEEEeCCCCCCC-CCCceeeeeeCcEEcCCCcceeeccC----CcceEEE
Q 004803 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALP-QRGGEVNLTLGGIDLNNSGSVVVRED----KKLLTVL 93 (729)
Q Consensus 24 ~L~l~Kkg~---~~k~WkkRWfVL~g--~~L~yYKd~~~~~p-~~g~~~~i~L~~I~L~~~~sv~~~~~----Kk~~fvi 93 (729)
|||+-.++. .....++|||.|.. .+|+|+..++.... ..+....+.+..+..-......+... ..+++++
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i 93 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII 93 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence 676543332 23578999999987 57777765432211 11111122333322211111111111 2234444
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. .+|+.-|-|.+.++.+-|+.+|+..++
T Consensus 94 ~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 94 VT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred Ec---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 33 379999999999999999999998764
No 116
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.48 E-value=0.00093 Score=57.97 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=57.3
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec----c-CCc---ceEEE
Q 004803 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----E-DKK---LLTVL 93 (729)
Q Consensus 22 eG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~----~-~Kk---~~fvi 93 (729)
+||||...++. -+|||.+|++..|.+|.++.. ++ |+.+.+.......+- . ..+ ..|-|
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG------~~----L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGG------QY----LCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCC------ce----eeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 69999888875 478999999999999987643 32 333433332111110 0 111 22333
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHH
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
-..+.+++..-+.|++.+.++.|++++.+
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 33456788888999999999999999864
No 117
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.46 E-value=0.0084 Score=69.25 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=30.8
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.++.|.+.. ++|+.+.|+|.+.++++.||.+|+.++.
T Consensus 454 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 455665543 4699999999999999999999999875
No 118
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.39 E-value=0.0023 Score=73.62 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=64.4
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceE-EEec
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT-VLFP 95 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~f-vit~ 95 (729)
....|+| |..+-+...+.|+|||||++.+.+.||+.+.+..... -+.+++...+.. ........| .++.
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p-------~s~~d~~s~~~~-~~~~~s~~fqli~~ 316 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEP-------ASKIDIRSVTKL-EQQGAAYAFQLITS 316 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccc-------cCccccccccee-eccchhHHhhhhhh
Confidence 6678899 5446666788899999999999999999876643222 122333332221 111222223 3332
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 96 ~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
..+|+|-+++.--..+|++.|+.+|.
T Consensus 317 ----t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 ----TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ----ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 47899999999999999999998886
No 119
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.33 E-value=0.00078 Score=76.37 Aligned_cols=102 Identities=21% Similarity=0.382 Sum_probs=65.5
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeE-----EEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSL-----VFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L-----~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~ 90 (729)
+.+.-.+||||.-.+. .|+.||||||+|-.-.- .-|+.++. .+.-.+-|.|+.+........-..+++|
T Consensus 461 p~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekka-----epqel~qldgytvdytdp~pglqgg~~f 534 (1218)
T KOG3543|consen 461 PPNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKA-----EPQELIQLDGYTVDYTDPSPGLQGGKHF 534 (1218)
T ss_pred CCccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhccc-----ChHHHhhccCeeeccCCCCCccccchHH
Confidence 3456678999954433 38899999999976433 33433322 2223445677766553221111233443
Q ss_pred E-EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 91 T-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 91 f-vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
| .+. .|-+..|..+++.++.-|++|+-+|..++
T Consensus 535 fnavk----egdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 535 FNAVK----EGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred HHHhc----cCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 4 333 37899999999999999999999998765
No 120
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.28 E-value=0.056 Score=48.90 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=58.3
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
..+++|.|...+.+ +-|++.|=...|.|.|-..+.. .-.-.+.+..+.+.... ...++.|.+....
T Consensus 3 eLlleg~l~~~~~~------~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~~-----~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFREHGGG------KPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEHL-----PGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEEeecCC------CceEEEEecccEEEEEecCCee---EEEEEEEecceEEecCC-----CCCCcEEEEEecC
Confidence 46788866522221 3588888888888887644321 01111233333333321 1235778776654
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
...+.|.|+|.|.++...|+++|+.++
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 444799999999999999999999886
No 121
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=96.22 E-value=0.0022 Score=72.44 Aligned_cols=96 Identities=29% Similarity=0.430 Sum_probs=63.9
Q ss_pred EEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---C-C--cceE
Q 004803 20 FKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---D-K--KLLT 91 (729)
Q Consensus 20 ~KeG~L~l~Kkg~--~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~---~-K--k~~f 91 (729)
+.+|-| +.|||. ..+.|+.|||+|.|..|.|-+....... .-..|+++...+|..-. . + +..|
T Consensus 736 ~iEGQL-KEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKAF 806 (851)
T KOG3723|consen 736 LIEGQL-KEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKAF 806 (851)
T ss_pred hhcchh-hhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchhh
Confidence 567733 224443 2678999999999999999776533221 11346666666543111 1 1 1346
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.|++. ..+|.|.|.++.-.++|+..|.=|++.+
T Consensus 807 EIFTA---D~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 807 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred heeec---CceEEeecccccCHHHHHHHHHHHHHHH
Confidence 66543 5789999999999999999999888754
No 122
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.15 E-value=0.0019 Score=75.81 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=62.4
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHHHH
Q 004803 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (729)
Q Consensus 34 ~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~ 113 (729)
...|.|-|.|.+.-+|+|||+..+..+. ..++|-|+.+..-.. .....|.+.|.+..+ ..+|+|.|++.--.
T Consensus 937 ssgwqkLwvvft~fcl~fyKS~qD~~~l----aslPlLgysvs~P~~-~d~i~K~~vfkl~fk---~hvyffraes~yt~ 1008 (1036)
T KOG3531|consen 937 SSGWQKLWVVFTNFCLFFYKSHQDSEPL----ASLPLLGYSVSIPAE-PDPIQKDYVFKLKFK---SHVYFFRAESYYTF 1008 (1036)
T ss_pred cccceeeeeeecceeeEeeccccccccc----ccccccccccCCCCC-CCCcchhheeeeehh---hhHHHHhhhhhhhh
Confidence 4479999999999999999998887643 345677776665322 122345567776654 57999999999999
Q ss_pred HHHHHHHHHHH
Q 004803 114 YEWKTALELAL 124 (729)
Q Consensus 114 ~eWi~AL~~ai 124 (729)
++|+..|+.+-
T Consensus 1009 ~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 1009 ERWMEVITDAP 1019 (1036)
T ss_pred hhHHHHhhcCC
Confidence 99999998653
No 123
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.09 E-value=0.0073 Score=55.02 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=62.3
Q ss_pred ceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEEE
Q 004803 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~---~~~~Kk~~fvi 93 (729)
.++..||+ .|-|+ ....|++|||-|=.+.|-+|...... ++++ |.+.....|. ..-....|.++
T Consensus 2 DcIvhGyi--~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~----~~eL------i~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHGYI--KKLGGPFLSQWQTRYFKLYPNRLELYGESEAN----KPEL------ITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEeeeh--hhhCCHHHHHHHHHHheeCcceeeeccccccc----CCcE------EEeehhhhcchhheeeccCceEEE
Confidence 57889954 46554 46679999999999999997543332 2222 2222222111 11123346666
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
..+ +++.|++.++++.+..+|..-|+.+..
T Consensus 70 k~k--~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 70 KIR--DEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEc--CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 554 478899999999999999999998875
No 124
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=95.91 E-value=0.004 Score=76.79 Aligned_cols=161 Identities=15% Similarity=0.230 Sum_probs=122.0
Q ss_pred ccccchHHH---hhhCCCCcHHHHH-HHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc---cC----CCCCCccc
Q 004803 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV 233 (729)
Q Consensus 165 vFG~pL~~l---l~~~~~VP~il~~-~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~---~~----~~~~d~h~ 233 (729)
++|.++..+ .......|.++.+ |.......|....|+||.++....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 788888666 2223457888888 7777778899999999999998888888888876321 11 11235567
Q ss_pred hhhhHHHHhhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHhc----cCCh
Q 004803 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (729)
Q Consensus 234 vA~lLK~fLReL--PePLlp~~l~~~~l----------------~~~~~~~~~~ri-------~~l~~lIl~----~LP~ 284 (729)
+.+.++.|+|.+ |.+...+..|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 778999999999 99988888888777 333344444555 55665 445 8999
Q ss_pred hHHHHHHHHHHHHhhcccccccc-CCCc-cchhhhccc----cccCCC
Q 004803 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (729)
Q Consensus 285 ~n~~lL~~Ll~~L~~V~~~s~~N-kMt~-~NLAivfgP----~Llr~~ 326 (729)
....+|.++..|+.+|......| -|+. .||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999988888 8888 999999999 555543
No 125
>PLN02866 phospholipase D
Probab=95.91 E-value=0.06 Score=66.04 Aligned_cols=88 Identities=19% Similarity=0.358 Sum_probs=55.6
Q ss_pred CCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCC--cceee------ccCCcceEEEecCCCcceeEEEE
Q 004803 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS--GSVVV------REDKKLLTVLFPDGRDGRAFTLK 106 (729)
Q Consensus 35 k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~--~sv~~------~~~Kk~~fvit~~~~~grty~fq 106 (729)
..|.||||||+.+.|.|.+++.+..+. .-+.++.. ...+.. ..+.. ...-++.|.++.. +|.+.|.
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~--~v~lfD~~-~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~ 289 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPL--DIIVFDVL-PASNGNGEGQISLAKEIKERNPLRFGFKVTCG---NRSIRLR 289 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCcee--EEEEEecc-cccccCCCcceeecccccccCCCcceEEEecC---ceEEEEE
Confidence 469999999999999999887654421 11111110 001111 11110 1123456666543 6899999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCC
Q 004803 107 AETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 107 AeS~eE~~eWi~AL~~ai~~aP 128 (729)
|.+...+..|+.+|+.+..+.|
T Consensus 290 ~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred ECCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999976444
No 126
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=95.14 E-value=0.021 Score=63.73 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=60.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (729)
+...| ++.|.-.....|+-||++|..+.|.||+++.... .|+... |.+.....-....+-. .|.|...
T Consensus 24 ~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~--hGcRgs-----i~l~ka~i~ahEfDe~-rfdIsvn-- 91 (611)
T KOG1739|consen 24 VERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETE--HGCRGS-----ICLSKAVITAHEFDEC-RFDISVN-- 91 (611)
T ss_pred hhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhh--ccccee-----eEeccCCcccccchhh-eeeeEec--
Confidence 44445 3334444455799999999999999999986654 344433 4444322211112222 3444332
Q ss_pred cceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 99 ~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
..+.++.|.+...++.|+.+|.---.
T Consensus 92 -~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 -DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 57899999999999999999986544
No 127
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.89 E-value=0.052 Score=49.58 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=46.2
Q ss_pred EEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHH
Q 004803 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119 (729)
Q Consensus 40 RWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~A 119 (729)
-|..-+|.-|.||....+.. .+-|.|.|...+.+......+| .+... |..+.|+|.+..|++.|+.+
T Consensus 42 AwAsqTGKGLLF~~K~~dka--------~P~GiinLadase~~~~g~~kF--~f~~~---G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKA--------SPSGIINLADASEPEKDGSNKF--HFKIK---GHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhhccCceEEEEecccccc--------CCcceEehhhccccccCCCceE--EEEeC---CceeeeecCCHHHhccHHHH
Confidence 46666786666665322221 1445677777666555444554 44333 89999999999999999999
Q ss_pred HH
Q 004803 120 LE 121 (729)
Q Consensus 120 L~ 121 (729)
|.
T Consensus 109 lk 110 (112)
T PF15406_consen 109 LK 110 (112)
T ss_pred hh
Confidence 86
No 128
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.88 E-value=0.31 Score=46.11 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=48.4
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCceeee----eeCcEEcCCCcceee-------ccCCcceEEEec-CCCcc--ee
Q 004803 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV-------REDKKLLTVLFP-DGRDG--RA 102 (729)
Q Consensus 37 WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i----~L~~I~L~~~~sv~~-------~~~Kk~~fvit~-~~~~g--rt 102 (729)
-+.+|+.|=.+.|.|-|-+. +..+.+ +...+.+..+..... ....++.|.++. ....| +.
T Consensus 27 ~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~e 100 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAE 100 (125)
T ss_pred CCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEE
Confidence 46789999999999987542 222222 233444443222100 012345676653 22234 57
Q ss_pred EEEEeCCHHHHHHHHHHHH
Q 004803 103 FTLKAETSEDLYEWKTALE 121 (729)
Q Consensus 103 y~fqAeS~eE~~eWi~AL~ 121 (729)
+.|+|+|+.|+.+||.||.
T Consensus 101 l~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 101 LLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEECCCHHHHHHHHHhcC
Confidence 9999999999999999984
No 129
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.21 E-value=0.62 Score=43.01 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=54.4
Q ss_pred eEEEeeeeeeecCCCCCCc-EEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-C--CcceEEEe
Q 004803 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-D--KKLLTVLF 94 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~W-kkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~-~--Kk~~fvit 94 (729)
.+.+|-|...... +.| +.|+|.|=++.|+|.|...-....-.-...+.+..+.+.+...-.... . -+..|.|.
T Consensus 2 li~~Gel~~~s~~---~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQN---KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEecc---cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 4677855433321 223 578999999999999864321100000112233333333221100000 0 12455555
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHH
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
.. ..+..|.|+|.|+++...|+.||..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 43 2357799999999999999999864
No 130
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.99 E-value=0.011 Score=67.12 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=110.9
Q ss_pred CcccccchHHHh-hhCCCCcH-HHHHHHHHHHh---cC--CCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchh
Q 004803 163 SLVVGRPILLAL-EDIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (729)
Q Consensus 163 ~~vFG~pL~~ll-~~~~~VP~-il~~~i~~L~~---~G--l~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA 235 (729)
...||.-|..+. .-++.||. .+.+||..+.. ++ +...|.|+++.+.... .+...|....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 345555553332 22567888 77788776665 22 3344666665432211 1223344457899999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcCC-HHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004803 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDR-KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (729)
Q Consensus 236 ~lLK~fLReLPePLlp~~l~~~~l~~~~~~~-~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (729)
.+++.|.|.+|.|+.. .++...| ..+.+...+- -....++.|+.+-.+|..||...+.-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999544 2222222 2333444443 346899999999999999998877633 899
Q ss_pred hhhccccccCCCCCCCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 315 AACMAPLLLRPLLAGECELED-DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 315 AivfgP~Llr~~~~~~~~le~-~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
+|++.|+++|++.. ++. ++-..++. +....+..+.|++....|..+.
T Consensus 343 ~I~~~~~~~r~ppt----L~~~~~h~~~~~-----------~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 343 AIVWSPNLFRPPPT----LNGADTHLLSGL-----------NVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eeecCCCCCCCCCC----CCchhhhhcccC-----------Ccceeecccchhhhhhhhhccc
Confidence 99999999999852 221 11111111 1233567788999999988766
No 131
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.69 E-value=0.015 Score=66.16 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHhhccccccccCCCccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 004803 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (729)
Q Consensus 294 l~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~ 373 (729)
++||..|+.++....|.+.|||+||+|+|+|.+.......+ -.-|+ +++.+.....-+++|++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs---~~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCS---HLWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhc---ccccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 36889999999999999999999999999997732111011 01122 2223333334578999999999998
Q ss_pred CCC
Q 004803 374 DES 376 (729)
Q Consensus 374 ~~~ 376 (729)
...
T Consensus 72 ~~a 74 (670)
T KOG1449|consen 72 PTA 74 (670)
T ss_pred CcC
Confidence 654
No 132
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.64 E-value=0.3 Score=43.80 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=55.4
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCC---CCCCceeeeeeCcEEcCCCcceeeccCCcceEEEe
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL---PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~---p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (729)
..+++|+|.....|. =|.|=|.|=++.|+|-+-..... .+-.....++|..+.+.... |.+
T Consensus 2 ~Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~- 65 (96)
T cd01228 2 QLVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRI- 65 (96)
T ss_pred cccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhc-
Confidence 357889776433332 36777778888887776542111 11122334555555544320 222
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
..+.+++|+|.|.|..|+.+|+.+|+..
T Consensus 66 -~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 66 -HNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -cccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 1345899999999999999999999865
No 133
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.63 E-value=1.6 Score=40.76 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=51.9
Q ss_pred EEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCc--ceeEEEEeCCHHHHHH
Q 004803 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLYE 115 (729)
Q Consensus 38 kkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~--grty~fqAeS~eE~~e 115 (729)
+.|-+.|=...|.|-+-..... ..+......-..|.++...-....++....|.+...++. ..+|.+||.|.++.+.
T Consensus 25 ~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~ 103 (114)
T cd01232 25 RERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQE 103 (114)
T ss_pred ceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHH
Confidence 5666667777787877643321 111111222233444332221112334456777655443 4799999999999999
Q ss_pred HHHHHHHHHh
Q 004803 116 WKTALELALA 125 (729)
Q Consensus 116 Wi~AL~~ai~ 125 (729)
|+..|+.++.
T Consensus 104 W~~~I~~il~ 113 (114)
T cd01232 104 WVKKIREILQ 113 (114)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.36 E-value=0.6 Score=52.26 Aligned_cols=111 Identities=20% Similarity=0.268 Sum_probs=84.4
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Q 004803 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (729)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~ 664 (729)
..||+.|..+..+|. ||+.=+-.|..++.+|+....+-.+|.--|++++++|++|+++...|-..+.--.+. +
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k------l 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK------L 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------H
Confidence 478888888877774 677767888889999999999999999999999999999999999998766432221 2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
-.....+=+.+...++.|..|++||.+|-+.|--|..-
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 22223333456677888888888888888877654443
No 135
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.10 E-value=0.45 Score=47.99 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=26.8
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCC
Q 004803 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP 56 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~ 56 (729)
++|+||.+++ ....|+++|+||..|.|+.|..-.
T Consensus 1 ~sG~LY~K~~--khs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKPR--KHSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecCC--CCCCceEEEEEEeCCEEEEEEEEe
Confidence 4699995444 345699999999999999998843
No 136
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=92.81 E-value=0.12 Score=59.19 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcce-eeccCCcceEE
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTV 92 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv-~~~~~Kk~~fv 92 (729)
.+++.++|+|.|+ |.......-..||++|-++.+.|.+-.. .. .+..+.. -..+++..+... .......+.|+
T Consensus 267 ~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~--~~~k~~~-r~~~s~~~~~v~~~~~~~~~~tF~ 340 (623)
T KOG4424|consen 267 SPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RL--PGSKYEV-RARCSISHMQVQEDDNEELPHTFI 340 (623)
T ss_pred CcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hc--ccceecc-ceeeccCcchhcccccccCCceEE
Confidence 5677899999666 5555556689999999998888876654 22 1221111 111222222111 11223346677
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
++-+ .|..-|+|.|.++..+|+++|+.+|..+
T Consensus 341 ~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 341 LTGK---KRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred Eecc---cceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 7642 5889999999999999999999999743
No 137
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=92.05 E-value=0.75 Score=41.68 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCCcEEEEEEEeC----CeEEEEeC--CCCCCCCCCceeeeeeCc-EEcCCCcceeeccCCcceEEEecCCCcceeEEEE
Q 004803 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGG-IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLK 106 (729)
Q Consensus 34 ~k~WkkRWfVL~g----~~L~yYKd--~~~~~p~~g~~~~i~L~~-I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fq 106 (729)
...|.|.-.+|+. ..|.||.- ++..+|+.+ +.... ..+..++.... .++...|++.. .++..|.|.
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~----v~C~~I~EvR~tt~LEm-PD~~nTFvLK~--~~~~eyI~E 90 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQ----VACSSISEVRECTRLEM-PDNLYTFVLKV--DDNTDIIFE 90 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccc----cchhhhhhhhhcccccc-cCcccEEEEEe--cCCceEEEE
Confidence 4569887777753 24555544 344433321 12111 23333333222 34556788765 346789999
Q ss_pred eCCHHHHHHHHHHHHH
Q 004803 107 AETSEDLYEWKTALEL 122 (729)
Q Consensus 107 AeS~eE~~eWi~AL~~ 122 (729)
|.+..+++.|+..|+.
T Consensus 91 a~d~~q~~SWla~Ir~ 106 (107)
T cd01231 91 VGDEQQLNSWLAELRY 106 (107)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999974
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.78 E-value=4.8 Score=42.28 Aligned_cols=70 Identities=33% Similarity=0.376 Sum_probs=54.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~---~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
.+||.|...+..|..+|...-|.=..+|+-+++-+.++ ...-..|++.|.+++..|++.+.-..-++..|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999866666666777666555544 44445588999999999999888888888777
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.33 E-value=2 Score=45.72 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=67.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004803 579 EEELAIQRLEITKNDLRHRIAKEAR-----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (729)
+-...|+++-..+..|+.+|.+... .....+.. ......++++-..|++.+.+++++++..+.--..+...+..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQL-KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888999999987665 22222211 23334445555667777777777777777766666666654
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 654 SSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 654 ~~~~~~----~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
....+. .-........++..++...+..+..|+.++..-+.++.++-..
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 0011122233344444444445445555555555555555443
No 140
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=91.23 E-value=0.14 Score=60.85 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=65.2
Q ss_pred CceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEec
Q 004803 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~ 95 (729)
..+++.||| .|-.. +...+.|||..+.+..+.||...++..+++ .|.+...+.|.. .....+-+++.
T Consensus 85 sp~~~~gwl--dk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~---------~i~va~is~v~~-~gd~kfevitn 152 (1186)
T KOG1117|consen 85 SPVIKSGWL--DKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKG---------PIPVAAISAVRN-FGDNKFEVITN 152 (1186)
T ss_pred Cchhhcchh--hccCcCcccccCccceecCCCCccccCCCCCCCCCC---------ceeeehhhhhhh-ccCceEEEEec
Confidence 349999955 44432 234579999999999999999988776443 244444333222 22233345543
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 96 ~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.|+|.|.++++.++..|+..++.++.
T Consensus 153 ----~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 153 ----QRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred ----ceEEEEecCCcccceeeechhhhcch
Confidence 79999999999999999999998874
No 141
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=91.22 E-value=0.34 Score=52.43 Aligned_cols=104 Identities=15% Similarity=0.292 Sum_probs=68.2
Q ss_pred CCCCceEEEeeeeeeecC---CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc-----eeecc
Q 004803 14 GASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-----VVVRE 85 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg---~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s-----v~~~~ 85 (729)
+.+..++.-| |.-.+- ..+..++.||..|+|..+|.|..++-.. ..++.....+.+-..-. ....+
T Consensus 276 ~v~~qivyMG--Wvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t----~dw~rAe~ty~vye~mfki~Kdsd~~D 349 (505)
T KOG3549|consen 276 AVGEQIVYMG--WVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNT----ADWSRAEVTYKVYETMFKIVKDSDTVD 349 (505)
T ss_pred CccceEEEee--eccccccCcccccccCceeEEecCcEEEEEcCCCcch----hhhhhhhhhHHHHHHHHHHhccccccc
Confidence 4567899999 544442 3366779999999999999998764321 11111111111111000 00124
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+++||.+... .|...||..+...|+-+|-.+.+.|+-
T Consensus 350 ~R~~CF~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 350 SRQHCFLLQSS--GGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred cccceEEEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 57789998754 478999999999999999999988763
No 142
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=90.80 E-value=1.6 Score=44.30 Aligned_cols=72 Identities=32% Similarity=0.333 Sum_probs=50.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH----HHHHHHH
Q 004803 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEAD 681 (729)
Q Consensus 606 ~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~e----ia~~E~~ 681 (729)
+.||+.-++|.+--+.-|..||+|++.|+-|=.. -+.+.+. .+.+=.+..+++|.| |-.||+|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~-----------~~~~~~~--~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ-----------GNSSGSS--SPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5799998999888888899999999988766321 1111111 223334455666655 7789999
Q ss_pred HHHHHHHHH
Q 004803 682 VARLKQKVA 690 (729)
Q Consensus 682 v~~le~~~~ 690 (729)
+++.||+-.
T Consensus 80 ~~kWEqkYL 88 (205)
T PF12240_consen 80 MTKWEQKYL 88 (205)
T ss_pred HHHHHHHHH
Confidence 999998863
No 143
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.33 E-value=2.6 Score=38.37 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=44.5
Q ss_pred EEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE-EecCCCcceeEEEEeCCHHHHHHHH
Q 004803 39 KRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV-LFPDGRDGRAFTLKAETSEDLYEWK 117 (729)
Q Consensus 39 kRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fv-it~~~~~grty~fqAeS~eE~~eWi 117 (729)
+..|.|=.+.|.|-.-..... -.-....+|..+.+.+... ...-+.+|. +++ .+.+.+||+|+++..+|+
T Consensus 21 rv~~FLfND~Lvva~~~~~~k--y~~~~~~~L~~i~V~ni~D---~~~~kNafki~t~----~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 21 RVMLFLLNDRLIVGNINAAGK--YVMESTYSLNSVAVVNVKD---RENAKKVLKLLIF----PESRIYQCESARIKTEWF 91 (100)
T ss_pred eEEEEEeccEEEEEEecccce--EEEEEEEehHHeEEEecCC---CcCcCceEEEEeC----CccEEEEeCCHHHHHHHH
Confidence 344566666666654322111 1122334555554433211 112233454 444 588999999999999999
Q ss_pred HHHHHHH
Q 004803 118 TALELAL 124 (729)
Q Consensus 118 ~AL~~ai 124 (729)
..|++|.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999886
No 144
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.31 E-value=3.8 Score=39.27 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=50.9
Q ss_pred EEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHH
Q 004803 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (729)
Q Consensus 38 kkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi 117 (729)
+.|.+-|=...+.|.|-........+......-..|.++...-.....+....|.+....+ ..+|.++|.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 5677778788888887653221111111112223343333221111122244576665443 469999999999999999
Q ss_pred HHHHHHHh
Q 004803 118 TALELALA 125 (729)
Q Consensus 118 ~AL~~ai~ 125 (729)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999985
No 145
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.93 E-value=64 Score=39.31 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 666 SKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
...++|=.||-.|..|+...|+++..|..++
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444444444444444444444
No 146
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.38 E-value=7.6 Score=45.17 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=75.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLER------RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~------~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (729)
++..--||+.-.+.+-..|+-=-+.|+.|=..+.. |.+.+++++..|+-||-++|.=+..=...-.+
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~------- 291 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH------- 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH-------
Confidence 34445677777777777776666666666555543 44578889999999999888665544444444
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 654 ~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
++.+...+=.||+..|+|+..|.+++.+|+.++--|
T Consensus 292 ----------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ----------MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566788999999999999999999999988755
No 147
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.34 E-value=5.9 Score=43.27 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=64.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhCCCCCCC
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--------RDLRAALEVGLSMSSGQF 658 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e--------~~~~~~Le~~l~~~~~~~ 658 (729)
.++....|+.|..+|+-.+-.+|++|+||.+.+.+=...|+.++.+|+.|++.= ...+.||+.+=+ .-.+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n--~~~~ 289 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN--LEAL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--CcCC
Confidence 566677899999999999999999999999988766666555555555554421 223446666544 1112
Q ss_pred C----C-C-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 004803 659 S----S-S-RGMDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 659 ~----~-~-~~~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
+ + + ..|=.+..+.++.=...|..|-.|++
T Consensus 290 ~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~ 324 (365)
T KOG2391|consen 290 DIDEAIECTAPLYKQILECYALDLAIEDAIYSLGK 324 (365)
T ss_pred CchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 1 1 22334555556666667777777776
No 148
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.06 E-value=2.5 Score=39.46 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=50.6
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCceee----eeeCcEEcCCCcceeec-cCCc--ceEEEecCCCcceeEEEEeCC
Q 004803 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNSGSVVVR-EDKK--LLTVLFPDGRDGRAFTLKAET 109 (729)
Q Consensus 37 WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~----i~L~~I~L~~~~sv~~~-~~Kk--~~fvit~~~~~grty~fqAeS 109 (729)
=+.||.-|=+..+.+.|...... +.+... +.+..+.|......-.. ..++ +.|.+... .....|.|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 36889888888888998654421 111111 12233333322110000 1222 45555543 223679999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 004803 110 SEDLYEWKTALELALA 125 (729)
Q Consensus 110 ~eE~~eWi~AL~~ai~ 125 (729)
+++...||.||..|+.
T Consensus 97 ee~K~kWm~al~~a~s 112 (116)
T cd01223 97 EHLRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999986
No 149
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=87.87 E-value=0.37 Score=58.05 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=56.4
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCc
Q 004803 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (729)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (729)
-.+|||+ |.....++|.+|||+|.++.|.||++....... +.+.+.+.... .......-+.. ..+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~-------~~~~~~~~~a~---i~~~~~~~~~~-~~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTT-------CGGGINLVTAW---IQNGERMDICS-VDGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccC-------CCCcccccccc---cccCCCcccch-hhcc-
Confidence 3568554 777778899999999999999999887554321 11223222110 01111111222 2122
Q ss_pred ceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 100 GRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 100 grty~fqAeS~eE~~eWi~AL~~a 123 (729)
...|+..+-+......|+.+++-+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 467889999999999999999865
No 150
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=86.54 E-value=0.1 Score=60.39 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=41.4
Q ss_pred eEEEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc
Q 004803 19 VFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~-~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s 80 (729)
-..+||||+.|.... ...|+|.||||.+..|++|....... .+.++.|..+.|.....
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~e 620 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAEE 620 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHHH
Confidence 456788887776632 55699999999999999999987655 34455565555555444
No 151
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=86.37 E-value=2 Score=41.23 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.7
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
+.|.|..-++.|..|+|.|+|..++++|+.+|..+
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 55666666777888999999999999999999864
No 152
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=86.02 E-value=2 Score=36.43 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
++.-+++-+..|+++|+.|..++..+|+.+..-.. -|. + .-++.+|.....-.+++.-|+.+|....
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~---~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSD---EKK------K---KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999988752111 010 1 3455677788888899999999886543
No 153
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.73 E-value=7.9 Score=41.86 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=41.7
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE----------RRLALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~----------~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
..+|..-.+|+..|..-++.||.|+.-+.+-+..+.+ .|..|+.++..|++.|+.+.-.|..|+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 3455666677777777777777777766554444433 2445666666777777777666666665
No 154
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=83.60 E-value=0.56 Score=52.94 Aligned_cols=103 Identities=15% Similarity=-0.011 Sum_probs=60.5
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---C
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~------~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~---K 87 (729)
...+|.|+++++....+.+.|.++|++|..+ .|.+|.+++... ...+ ..+.-+.+.++++.++..... .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~-~~~~rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWP-YRCLRRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccc-hhcceeeEeeccceeeecccccccC
Confidence 5678999999888888889999999999875 334444332211 1111 111125577777776543211 1
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
...++++..... . +|-+...-+...|+++|...+
T Consensus 84 ~~i~~~f~~~a~-e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRAE-E--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecchH-H--HHHHHHHHHhhhhhhhhhhcc
Confidence 112222221111 1 666677778888999987644
No 155
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.90 E-value=8.9 Score=35.56 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=54.5
Q ss_pred EEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHH
Q 004803 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (729)
Q Consensus 38 kkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi 117 (729)
..||++|=.+.|++..-.+... .---...++|.++.++.-.. .+..++.|.|+- ..--+..+.|.+.+|+.+|+
T Consensus 29 ~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~Wl 102 (111)
T cd01225 29 RERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQEWV 102 (111)
T ss_pred ceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHHHH
Confidence 5789999999998887644321 00113346777787775322 234456787763 33356888899999999999
Q ss_pred HHHHHHH
Q 004803 118 TALELAL 124 (729)
Q Consensus 118 ~AL~~ai 124 (729)
..|++.+
T Consensus 103 ~hL~~~~ 109 (111)
T cd01225 103 ELLNANN 109 (111)
T ss_pred HHHHhhc
Confidence 9998653
No 156
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=79.84 E-value=1.3 Score=48.87 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=62.3
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------cCCcce
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLL 90 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-------~~Kk~~ 90 (729)
.|-+-|||--+-.+.+...|+..+++|+...|.+|.+-+.+. ..+..+.....|--..-|... ..-...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~k----eaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~ls 366 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTK----EAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLS 366 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhH----HHhcChhhhhhhhhhhheecCCCCCCCcCCceEE
Confidence 566779665444566678899999999999999998865443 111112222221111101000 011123
Q ss_pred EEEecCCCcc-eeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 91 TVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 91 fvit~~~~~g-rty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
|-..+.++.| .+|+|.++|-.|+-.|...|-.-..
T Consensus 367 Fa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch 402 (506)
T KOG3551|consen 367 FATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCH 402 (506)
T ss_pred EEEecccccceEEEEEEeccHHHHHHHHHHHHHHHH
Confidence 4444433333 6999999999999999988854433
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.81 E-value=22 Score=36.58 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=43.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004803 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le 686 (729)
.|++.|..-.....++...|++.|+.+..+..+ |-.+-++|-+|++.+..++..|+
T Consensus 104 ~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 104 TLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING------------------------LKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444556666666666665555333 22344667777778888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 004803 687 QKVAELHHQLNQQRQ 701 (729)
Q Consensus 687 ~~~~~l~~~l~~~~~ 701 (729)
.+..+++.....+..
T Consensus 160 ~~~~~~~~~~~~~wf 174 (206)
T PRK10884 160 LQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888776665554
No 158
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.96 E-value=64 Score=34.78 Aligned_cols=113 Identities=25% Similarity=0.273 Sum_probs=71.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE---RRLALEQDVSRLQEQLQAERDLRAALEVGLSM-SSG 656 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~-~~~ 656 (729)
+..+..|...-.+++.|+.++.+.+..++.-+..-|+.+.+ .|..||..|..|+++|.--+.+|..=-..|.. ..+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 45567777777899999999999999999998888877654 47789999999999999888888762233422 212
Q ss_pred CCCCC--CCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004803 657 QFSSS--RGMDSKTRAELEEI-ALAEADVARLKQKVAELH 693 (729)
Q Consensus 657 ~~~~~--~~~~~~~~~ll~ei-a~~E~~v~~le~~~~~l~ 693 (729)
..+.. .+........|.+| +-.|..+.+-.+.+...+
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y 193 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWY 193 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhc
Confidence 22221 22233445556666 345555555554444433
No 159
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=78.23 E-value=0.048 Score=68.96 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=65.5
Q ss_pred CCceEEEeeeeeeec------CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCc---EEcCCCcc-ee-ec
Q 004803 16 SNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG---IDLNNSGS-VV-VR 84 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kk------g~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~---I~L~~~~s-v~-~~ 84 (729)
....-.+|+||.+.- ...-++|...||++..+.+.||+|.+.... +.+ +.+++ +.+..+.. +. ..
T Consensus 2296 ~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a--~ve--~~~r~e~~lel~~a~i~~a~dy 2371 (2473)
T KOG0517|consen 2296 SAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLA--SVE--LLVRGEPPLELDMAAIEVASDY 2371 (2473)
T ss_pred cHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccc--cch--hhccCCcchhcchhHHHHHHHH
Confidence 333567898873311 123568999999999999999999765331 100 11111 11222111 11 11
Q ss_pred cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+|++.|.+. ..+|..|.|+|..++++..|+.++....+
T Consensus 2372 ~kkk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2372 HKKKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HHHhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 2455556654 45799999999999999999998887765
No 160
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.90 E-value=81 Score=34.49 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004803 624 LALEQD----VSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (729)
Q Consensus 624 ~~Le~~----V~~L~~~L~~e~~~~~~Le~~l~~~~~~ 657 (729)
-+|||| |-+|++|..+=..=.+.|+.-|..+.+.
T Consensus 170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~ 207 (310)
T PF09755_consen 170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSA 207 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 345555 6677777666555566777777665443
No 161
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.12 E-value=22 Score=36.30 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~ 690 (729)
|..|.+.|..++..|+....--..|+.=+......+. --..--.++.++-.++..++.+|..|.+++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444443332222221 0011122344444444444444444444443
No 162
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.03 E-value=0.045 Score=59.65 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=78.0
Q ss_pred HHHHhhhhhHHHHH---HHHHHhhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 004803 583 AIQRLEITKNDLRH---RIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (729)
Q Consensus 583 ~~~~~~~~~~~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~r~~---Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~ 656 (729)
..+-|++.+.+|+- +-....=+||.|--.++.++++|+.|..+ |----.+|..+|-.|+.--+.|-.+=++-.|
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 34556677777664 45667789999988889999999988654 5555667888999998755544443332222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhc
Q 004803 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN-QQRQHHY 704 (729)
Q Consensus 657 ~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~-~~~~~~~ 704 (729)
-+....-+..-.+.| +-+-|.+|-+|+|+|..|+..|. -+|..-+
T Consensus 499 -splaqgkdayELEVL--LRVKEsEiQYLKqEissLkDELQtalrDKky 544 (593)
T KOG4807|consen 499 -SPLAQGKDAYELEVL--LRVKESEIQYLKQEISSLKDELQTALRDKKY 544 (593)
T ss_pred -CccccCcchhhHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 111222233333333 45679999999999999999886 3444333
No 163
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.26 E-value=2.3e+02 Score=34.69 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004803 631 SRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 631 ~~L~~~L~~e~~~~~~Le~ 649 (729)
..|+++|.+|+..|..||.
T Consensus 491 ~~LEkrL~eE~~~R~~lEk 509 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEK 509 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 164
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.12 E-value=16 Score=36.18 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
+--.+|..++..|+++|..-..-...|+.-|..-.. -+.+.+|..+|+.|+.++..|+.++..|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~--------~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS--------EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777666666666655531111 112467899999999999999999988875
No 165
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.10 E-value=97 Score=32.76 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=63.8
Q ss_pred HhhhhhHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004803 586 RLEITKNDLRHRIA----KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (729)
Q Consensus 586 ~~~~~~~~~~~~~~----~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (729)
+.|..+.+|..|+- +-.+.+..|..+ +.+-..|.+.+..+|.+-.+|+..-.+=......|+.--.+... -=
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~e---Ek 77 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEE---EK 77 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 34556666666652 222444555544 34444555555555555555555443333333333332211100 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
..|..++.+.-.+|+.|+.++...+..+..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477789999999999999999999999999999886554
No 166
>PRK11637 AmiB activator; Provisional
Probab=72.37 E-value=26 Score=39.90 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004803 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (729)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~ 705 (729)
++=.+|+.++.+|..++.++..++..|.+.....|.
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666655554444
No 167
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.74 E-value=19 Score=30.57 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=40.6
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 004803 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~----------~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
++||+.+..||.|+.-=.+-|++-|.....=.. ..++.=..|..+|..|+++|++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998888888888876533222 1133334588999999998765
No 168
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.56 E-value=59 Score=35.74 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.+++++.+|+.++.+|+....
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666665555433
No 169
>PF15411 PH_10: Pleckstrin homology domain
Probab=70.18 E-value=56 Score=30.55 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCcEEEEEEEeCCeEEEEeCCCCCCCC---------CCceeeeee-CcEEcCCCcceeecc-CCcceEEEecC-CCccee
Q 004803 35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTL-GGIDLNNSGSVVVRE-DKKLLTVLFPD-GRDGRA 102 (729)
Q Consensus 35 k~WkkRWfVL~g~~L~yYKd~~~~~p~---------~g~~~~i~L-~~I~L~~~~sv~~~~-~Kk~~fvit~~-~~~grt 102 (729)
..|+-+.|-|=...|.+++........ +.....+.| |.|-+.+.+.+.... ...+...|... ...--.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~ 98 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN 98 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence 459999999999999999887654431 112223334 457777766654433 23344444442 223458
Q ss_pred EEEEeCCHHHHHHHHHHH
Q 004803 103 FTLKAETSEDLYEWKTAL 120 (729)
Q Consensus 103 y~fqAeS~eE~~eWi~AL 120 (729)
|+|...+++.++.|..+|
T Consensus 99 F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 99 FTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EEEEeCCHHHHHHHHhhC
Confidence 999999999999999875
No 170
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.11 E-value=21 Score=47.19 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004803 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~-~~~~~~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
+-+...+|..+..+-..|+.++.+|++.|+++..=.+-|..-++...-.. ..=-.+=.....++++++.++.++..||.
T Consensus 793 e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~ 872 (1822)
T KOG4674|consen 793 EESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI 872 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677788888999999999999999877766666554321111 11122334567888999999999999999
Q ss_pred HHHHHHHHHH--HHHhhhcCC
Q 004803 688 KVAELHHQLN--QQRQHHYGS 706 (729)
Q Consensus 688 ~~~~l~~~l~--~~~~~~~~s 706 (729)
++.+|-.+|- ..|..+.++
T Consensus 873 k~~eL~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 873 KLSELEKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHHHHHHhHHHHhhccc
Confidence 9999988776 334444443
No 171
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.44 E-value=1.9e+02 Score=37.00 Aligned_cols=71 Identities=31% Similarity=0.398 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHHH------HHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-IALAEADVARL------KQKVA 690 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~e-ia~~E~~v~~l------e~~~~ 690 (729)
.+.-++..|+-+|.++-.+++....-=+.+|.++. +...+.+.+..+.+ |+-++-+|-.| ++++.
T Consensus 817 ~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~--------k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~ 888 (1293)
T KOG0996|consen 817 ELENRLEKLTASVKRLAELIEYLESQIAELEAAVL--------KKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIK 888 (1293)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33334444444555554444444433444555432 34456677777777 77787777777 36666
Q ss_pred HHHHHH
Q 004803 691 ELHHQL 696 (729)
Q Consensus 691 ~l~~~l 696 (729)
.|+..+
T Consensus 889 ~lq~~i 894 (1293)
T KOG0996|consen 889 ELQNKI 894 (1293)
T ss_pred HHHHHH
Confidence 666544
No 172
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.94 E-value=63 Score=38.95 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=34.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (729)
+++|...-.++..+-.++...+..+ ..+ +++...+......++++.+.++.++..-..-...|+..+..
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444445555555555443332 222 23333344445556666666666665555555555555543
No 173
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=68.81 E-value=3.9 Score=47.24 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=58.2
Q ss_pred CCCCceEEEeeee-eeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcE---EcCCCcceeeccCCcc
Q 004803 14 GASNTVFKSGPLF-ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGI---DLNNSGSVVVREDKKL 89 (729)
Q Consensus 14 ~~~~~v~KeG~L~-l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I---~L~~~~sv~~~~~Kk~ 89 (729)
..+++..|+||+- ...+... -||.|..|+...+..|.+.....- ...++|..| ...+..+.++.....+
T Consensus 408 Rksst~~kEGWmvHyt~~d~l---RkrHYWrldsk~itlfqn~s~~ry----YkeIPLsEIl~v~~~~~~~~vp~~~~ph 480 (888)
T KOG4236|consen 408 RKSSTKLKEGWMVHYTSKDNL---RKRHYWRLDSKCITLFQNESTNRY----YKEIPLSEILSVSSNNGFSLVPAGTNPH 480 (888)
T ss_pred ccchhhhhcceEEEEechhhh---hhhhhheeccceeEeeecCCCcee----EEeecHHHhheeeccCCcccCCCCCCCc
Confidence 4466788999663 1112222 256666788888888877654320 011222221 1122111223345668
Q ss_pred eEEEecCCCcceeEEEEeCC------------HHHHHHHHHHHHHHH
Q 004803 90 LTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELAL 124 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS------------~eE~~eWi~AL~~ai 124 (729)
||.|.+ +.+.||-.++ ......|-.||+.++
T Consensus 481 cFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 481 CFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred eEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 999987 4577777777 556899999999876
No 174
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=68.34 E-value=33 Score=33.27 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=53.6
Q ss_pred EEEEEEeCCeEEEEeCCCCCCCCCCc---------------eeeeeeCcEEcCCCcceeeccCCcceEEEec-----CCC
Q 004803 39 KRWFILTRTSLVFFKNDPSALPQRGG---------------EVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-----DGR 98 (729)
Q Consensus 39 kRWfVL~g~~L~yYKd~~~~~p~~g~---------------~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~-----~~~ 98 (729)
-.-||.+.....+|++....+.+-++ ...++.....+..... ...+.++.+.++. .++
T Consensus 51 ~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~--ad~e~~~vwEliH~kSe~egR 128 (160)
T cd01255 51 LMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSA--ADMESNFLWELIHLKSELEGR 128 (160)
T ss_pred EEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCC--cCcccceEEEEEeecccccCC
Confidence 45688888888899886544322211 1122222223322211 2234556665543 344
Q ss_pred cceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 99 DGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 99 ~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
..++|.||+.+.+-.+..+..|+..+..
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998863
No 175
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.28 E-value=69 Score=39.20 Aligned_cols=109 Identities=19% Similarity=0.373 Sum_probs=64.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCC
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEV----GLSMSS 655 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~----~l~~~~ 655 (729)
-|+|++.++.++|.|+. .|+...+++-+ .+.++|..|.+.-++|.+++++=.+.+..|.. .|+...
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677777777777764 22332222222 23444555555555555555544444444432 222221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 656 ~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.. .|. +-..-++.-.|+..+...+-.|..-+..++.++..|+.
T Consensus 625 ~~--~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQ--LPV-LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred cc--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 44455888899999999999999999999999976554
No 176
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.27 E-value=84 Score=35.02 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 673 EEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~ 695 (729)
.+++.++.++..++.++..++.+
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 177
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.59 E-value=1.3e+02 Score=31.89 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le 627 (729)
.+++++..-..|+.+|.+--+.....+..+..++..++.+|..|.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555544
No 178
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.15 E-value=97 Score=41.86 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC---C-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS---S-RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~---~-~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
.+...+..||++|..|+..|.+|...|.=+|++...-.|.+.. + .-+-.+..+|-.+++..|.++..|..++.++.
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456678899999999999999999999999554433344421 1 11334444555556666666666666666555
Q ss_pred HHH
Q 004803 694 HQL 696 (729)
Q Consensus 694 ~~l 696 (729)
..+
T Consensus 1090 ~~~ 1092 (1930)
T KOG0161|consen 1090 AEV 1092 (1930)
T ss_pred HHH
Confidence 433
No 179
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.06 E-value=1.2e+02 Score=32.08 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
.|.+......+++.+|+-++..|...+++=.+....|..
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666666655554443333333333
No 180
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=66.76 E-value=45 Score=37.58 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-------
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------- 659 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~------- 659 (729)
|+.+.++|+.+-. +.|+.|.- |=....+.+..||....+..+++..-...-..|+.|+....|++.
T Consensus 231 l~~~~~dl~~Q~~---~vn~al~~----Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 231 LEQTANDLRAQAD---AVNAALRK----RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3444555554443 45555443 334455555556666655555555555555566666655444432
Q ss_pred ----CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 660 ----SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 660 ----~~---~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
=| -+-++.-..|+.||..|.+.|..|.+++...+..|..
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~ 349 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQK 349 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 3456667788899999999999999999888776654
No 181
>PRK11637 AmiB activator; Provisional
Probab=66.02 E-value=1.6e+02 Score=33.52 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (729)
+-..|+.+...+.+|...+ +.++..+..+...+.+++++..+|+.+..+-..+...|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k-----------~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~---------- 226 (428)
T PRK11637 168 RQETIAELKQTREELAAQK-----------AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES---------- 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4455666665555554333 2333333444444444444444444444443333333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 660 ~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
..++.-++|+.++.+..+|+..+..+..
T Consensus 227 -------~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 227 -------SLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444455555555556666555544
No 182
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=65.87 E-value=6.4 Score=47.34 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=34.2
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+.+.|++.+.+...-.|.|.|++.+++.+|+++|+.+...+
T Consensus 873 ~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 873 KSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 34778888777767789999999999999999999987643
No 183
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=65.57 E-value=84 Score=32.15 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=68.2
Q ss_pred cccCcccCCCCcccCCCCc--hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHH
Q 004803 560 WGRSNARKTSSVESIDSSG--EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR----KQALHERRLALEQDVSRL 633 (729)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~----~~~~~~~r~~Le~~V~~L 633 (729)
.|+++. +......||+. +.+-++-||+.-=.+|-.+|++--++ .++| .....=-|.+|||=.+=-
T Consensus 74 lG~~~~--s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~-------~~~~~~~~~~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 74 LGRGGK--SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQA-------AESRRSDTDSKPALVKREFEQLLDYK 144 (195)
T ss_pred hccccC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-------HHhcccCCcchHHHHHHHHHHHHHHH
Confidence 555544 44555667754 45677888988888888888642221 1221 111122244555555544
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 634 QEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 634 ~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
++||+ ..-+ ++ ...+...+.+=++|..+|..|.-||.++..=+..|.+-+
T Consensus 145 ~~ql~------~~~~---~~--------~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 145 ERQLR------ELEE---GR--------SKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHH------hhhc---cC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444 3222 22 123556677778888888888888888887777776644
No 184
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.05 E-value=58 Score=29.92 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.7
Q ss_pred ceEEEecCC-CcceeEEEEeCCHHHHHHHHHHHHH
Q 004803 89 LLTVLFPDG-RDGRAFTLKAETSEDLYEWKTALEL 122 (729)
Q Consensus 89 ~~fvit~~~-~~grty~fqAeS~eE~~eWi~AL~~ 122 (729)
.||.|.... .+-+++.|-|++.++++.|+..|+.
T Consensus 80 ~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 456555422 1257899999999999999999863
No 185
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=64.69 E-value=32 Score=40.33 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 594 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
||.++-+--|++.-|+.. ...|.+....|+.+|.+|+.+|+.++.-..-|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~----~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKE----NEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444555444432 233334445555555555555555444444443
No 186
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=63.97 E-value=50 Score=40.54 Aligned_cols=98 Identities=22% Similarity=0.361 Sum_probs=54.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (729)
..++|+..|.+|...+++--. .++ .++-+=.++|+.+..||.+|.-=.....++|..|.......
T Consensus 597 elE~le~eK~~Le~~L~~~~d-------~lE----~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~---- 661 (769)
T PF05911_consen 597 ELEKLESEKEELEMELASCQD-------QLE----SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESY---- 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 445555555555555543222 222 22222356899999999999999999999998886332211
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
+.+-.-+..+|+++..|-.+|..|..+|-.+|.
T Consensus 662 ------e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~ 694 (769)
T PF05911_consen 662 ------ESLETRLKDLEAEAEELQSKISSLEEELEKERA 694 (769)
T ss_pred ------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122223455555555555555555555544
No 187
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.68 E-value=37 Score=38.21 Aligned_cols=69 Identities=30% Similarity=0.330 Sum_probs=45.5
Q ss_pred HHHhhhhhHHHHHHHHHHhh------------------------hhhhhhhhHHHHHHHHHH-----------HHH---H
Q 004803 584 IQRLEITKNDLRHRIAKEAR------------------------GNAILQASLERRKQALHE-----------RRL---A 625 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~------------------------~n~~~~~~~~~~~~~~~~-----------~r~---~ 625 (729)
|++||..|.-||.+...+|- -=-+||+-++|-|..+.. ||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999889888733321 112478888877764421 221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
.+.+-++||+.|+.|..-|.||=+-|.
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667888888888888887766554
No 188
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.41 E-value=88 Score=31.65 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=50.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004803 586 RLEITKNDLRHRIAKEARGNAILQASLER---RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~---~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (729)
.+--.+.+|+.++...--.+..+++.+.. +-..+...+..|+..+..|...|.+-......|..-+
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~----------- 153 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL----------- 153 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34456777888876655555556655533 3345566677788888888888888777777666533
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
..|-.+..++|+.+.+|+++=.+|=.++-+..
T Consensus 154 ------~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 154 ------QALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888899999999888888776665443
No 189
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.01 E-value=1.2e+02 Score=34.95 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
..-|.++..|=.||...|++|.-|..+..+||+||..|+.
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 3457788999999999999999999999999999987654
No 190
>PHA02562 46 endonuclease subunit; Provisional
Probab=61.74 E-value=1.7e+02 Score=34.11 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 665 DSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
|.....|-.+|+-++.++..|+..+.++....
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~ 329 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666444433
No 191
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=61.66 E-value=23 Score=29.73 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 628 QDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 628 ~~V~~L~~~L~~e~~~~~~Le~~l~~-~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
|-++.|+++|+.|..++...|+.+.. ... .+ . =.+.++..+..-++++..|+.+|..-..
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~---------~~---~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTD---------KK---K--VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------cH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998887752 111 00 0 2344555666666666666666665443
No 192
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.54 E-value=43 Score=27.83 Aligned_cols=27 Identities=30% Similarity=0.542 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
+.|=+....+..+|+++|.+|++++.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788899999999999999865
No 193
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.17 E-value=1.1e+02 Score=35.98 Aligned_cols=85 Identities=29% Similarity=0.445 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhh--------------hhhh---HHHHHHHHHHHHH-------HHHHHHHHHH
Q 004803 579 EEELAIQRLEITKNDLRHRIAKEARGNAI--------------LQAS---LERRKQALHERRL-------ALEQDVSRLQ 634 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~--------------~~~~---~~~~~~~~~~~r~-------~Le~~V~~L~ 634 (729)
.=+..|-||+.-=.+|..+..|-.|+=+. |||. +.+|.+.+.+--. .|.-++.+++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35667788888888888887665433222 3332 2455555543322 2555666677
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 004803 635 EQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEA 680 (729)
Q Consensus 635 ~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~ 680 (729)
++|+.|+.+|.-++. ++|.||+||+-+..
T Consensus 190 ~~ld~Etllr~d~~n-----------------~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQN-----------------RVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHh
Confidence 788888888887765 56788888887763
No 194
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=60.25 E-value=1.1e+02 Score=34.23 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhH-----HHHHHHHHHhhhh-hhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERRK-------QALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~n-~~~~~~~~~~~-------~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
.++..|+||+.+. +...+..|||-+- |.|||---|+. .+++..|-.|+.+.+..+++|+.
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665 5555666665543 34666543332 45666666677766666665543
No 195
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.20 E-value=2.1e+02 Score=32.15 Aligned_cols=81 Identities=27% Similarity=0.462 Sum_probs=58.9
Q ss_pred CcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEEecCCCcceeEEEEeCCHHHHH
Q 004803 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRDGRAFTLKAETSEDLY 114 (729)
Q Consensus 36 ~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-~~Kk~~fvit~~~~~grty~fqAeS~eE~~ 114 (729)
.|++.|||++...+.||.+........ --+.|++..|+.+... ...++-|.|-.. +.+|.|.|-+..-+.
T Consensus 34 ~~~k~~~~~~~~~~~~~~d~~A~~~~~------L~~~~~LR~C~~v~e~a~q~nY~~~i~~~---~~~~tL~~~~s~Ir~ 104 (593)
T KOG4807|consen 34 QWKKHWFVLTDSSLKYYRDSTAEEADE------LDGEIDLRSCTDVTEYAVQRNYGFQIHTK---DAVYTLSAMTSGIRR 104 (593)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccc------CCccccHHHHHHHHHHHHHhccceeeccc---chhhhhHHHHHHHHH
Confidence 499999999999999999865432111 2345888888764322 234455555432 789999999999999
Q ss_pred HHHHHHHHHHh
Q 004803 115 EWKTALELALA 125 (729)
Q Consensus 115 eWi~AL~~ai~ 125 (729)
.|+.|+++...
T Consensus 105 ~~~~A~~kT~~ 115 (593)
T KOG4807|consen 105 NWIEALRKTVR 115 (593)
T ss_pred HHHHHHHhccC
Confidence 99999997763
No 196
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=60.10 E-value=7 Score=45.41 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.7
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
++|+|..- .|.++.|.|.+.+|++.|++||+..|-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 47877643 388999999999999999999998774
No 197
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=59.48 E-value=1.6e+02 Score=33.76 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
+.+..|+..++..+..+++.+..++.+++.=+.+..+++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666777777777777777777777666666666653
No 198
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=58.45 E-value=1.7e+02 Score=30.05 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=76.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~---------------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~ 646 (729)
++-+|=|.+..-|+.|+-+|++.=-+-| ..|.++-+...++-++||-||.+.+.+--+|-.||.+
T Consensus 17 aa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~ 96 (205)
T PF12240_consen 17 AACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQF 96 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888885321111 2255666677788999999999999999999999865
Q ss_pred HHHhhCCCCC-----CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 647 LEVGLSMSSG-----QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 647 Le~~l~~~~~-----~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
=-.|-..+.. .+. .|..=+..-....++|.+...-+..||..|..||.+|-
T Consensus 97 a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 97 AMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3322221111 111 12111111114578888888889999999999998765
No 199
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.41 E-value=1e+02 Score=40.07 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCC
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVS----RLQEQLQAERDLRAALEVGLSMSS 655 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~----~L~~~L~~e~~~~~~Le~~l~~~~ 655 (729)
-+..+++|+......+.++.++ .+.++.....++...++.-.+|++++. .+..+++.++. .|..++..-.
T Consensus 382 y~~~~~~l~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~ 455 (1201)
T PF12128_consen 382 YNKLKQKLEEAFNRQQERLQAQ---QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQRE---QLKSELAELK 455 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3456677776666655555433 233344444444444333333333333 23333333222 2222221111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 656 ~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
..+.. |..+.++.++++.++.++....+++.....++.
T Consensus 456 ~~~~~----~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (1201)
T PF12128_consen 456 QQLKN----PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVE 493 (1201)
T ss_pred HHHhC----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 334567777777777777666665555544443
No 200
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=57.67 E-value=69 Score=34.91 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=50.4
Q ss_pred HHhhhhhHHHHHHHH-----------HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004803 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (729)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (729)
.+||..+..|++||. .-|+||..|++.+.= =..|..|+.+|.++|.+-...-.. +
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L--------~~~L~~eI~~f~~~l~~~~~~~e~---~--- 110 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL--------TKDLRREIDSFDERLEEAAEKEEL---S--- 110 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh---c---
Confidence 899999999999992 568999999998752 224556666666665543322111 1
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (729)
Q Consensus 654 ~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (729)
..-+.--++|..+|.++..|=..+.+
T Consensus 111 ------------~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 111 ------------KSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred ------------cCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 11123335566667776666555554
No 201
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.95 E-value=83 Score=28.49 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
=.+|-++...|+.+++.=+.-|..+...+...... . ..+.+|++++..+=.++..||.++..+..+|...
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~----~---~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKA----G---EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT----T---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555554321110 0 4567888888888888888888888887777654
No 202
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.02 E-value=1.9e+02 Score=27.49 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhHHH--HHHHHHHhhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 580 EELAIQRLEITKNDL--RHRIAKEARGN----AILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~--~~~~~~~~~~n----~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.+....++...+.|| |.+|+++|-.| -+++|..-..=..+++.-..++.++..|+..++
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666655 34556666666 233333332222333333344444444444443
No 203
>PHA02562 46 endonuclease subunit; Provisional
Probab=55.83 E-value=1.5e+02 Score=34.77 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccc
Q 004803 675 IALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQ 715 (729)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~ 715 (729)
|..++.++..++.++..+...+..-. ....|..|.+.-
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~Cp~C~~~~ 294 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYE---KGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCCcC
Confidence 33444444455555544444433322 245677776644
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.82 E-value=2.9e+02 Score=30.29 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 666 SKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
.+..++=++|+.++++|..+.+++.+|+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~ 237 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQE 237 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333333
No 205
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.80 E-value=31 Score=40.33 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
++-.+..++..++.-++.++..|++++..|+.+|..-
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667777888888888888888888888887544
No 206
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.26 E-value=2e+02 Score=39.07 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASLER----------RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~----------~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
.|..+.+|...-.+..-.=..||..+.. +...+...+..||.++..++.++..|...-..|+.-.
T Consensus 857 ~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~ 931 (1930)
T KOG0161|consen 857 SESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKK 931 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555433 3345677788999999999999999988888887644
No 207
>PRK09039 hypothetical protein; Validated
Probab=54.95 E-value=2.1e+02 Score=31.80 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=11.7
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAK 600 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~ 600 (729)
.|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 456666666677777754
No 208
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.93 E-value=1.6 Score=50.30 Aligned_cols=87 Identities=17% Similarity=0.355 Sum_probs=49.0
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHHHH
Q 004803 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (729)
Q Consensus 34 ~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~ 113 (729)
.|..+|.||..+.-.+.+|++..+.. +.+-..+.+.+|.++.....+. .+-..|.+.+....-..+|+.|+++...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~--~k~~i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQ--QKYAIKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCcccccc--ccceEEEEeecCCccceeEEecCCHHHH
Confidence 56677777776654444444332221 1122233455565555433222 2223344443333357899999999999
Q ss_pred HHHHHHHHHHH
Q 004803 114 YEWKTALELAL 124 (729)
Q Consensus 114 ~eWi~AL~~ai 124 (729)
-+||.|-+-|-
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999987553
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.40 E-value=1.8e+02 Score=36.09 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=55.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 004803 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~ 658 (729)
+=|..|++||..+.+++.+..+= +.+...+++.+..+.+.+..|+++-.++.+++++| .+.+|+.|-.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~a~~------ 584 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEA----EALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKEAKK------ 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------
Confidence 56778999999888888765422 23455557777778888888888888887777766 4466666543
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 004803 659 SSSRGMDSKTRAELEEIAL 677 (729)
Q Consensus 659 ~~~~~~~~~~~~ll~eia~ 677 (729)
.++++|.++-.
T Consensus 585 --------~~~~~i~~lk~ 595 (782)
T PRK00409 585 --------EADEIIKELRQ 595 (782)
T ss_pred --------HHHHHHHHHHH
Confidence 55777777753
No 210
>PRK09039 hypothetical protein; Validated
Probab=54.36 E-value=1.7e+02 Score=32.54 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=15.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhH
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASL 612 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 612 (729)
.++.+|+.-=.+|-.-+.-|--.++-||..+
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l 83 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSV 83 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444555544555555555555555555544
No 211
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.79 E-value=2.4e+02 Score=29.06 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=25.0
Q ss_pred ccccCcccCCCCc-ccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 004803 559 FWGRSNARKTSSV-ESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAI 607 (729)
Q Consensus 559 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 607 (729)
++|.+..++..+. |.|+---|-| +=|+-...-|..||..|++-||.
T Consensus 7 ~FG~~k~~~~~t~~eaI~kLrEte---emL~KKqe~Le~ki~~e~e~~A~ 53 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQEAIQKLRETE---EMLEKKQEFLEKKIEQEVENNAR 53 (221)
T ss_pred HhCcccccCCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655554 3332222211 11233345688899999887765
No 212
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.65 E-value=1.8e+02 Score=29.77 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=56.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (729)
.|..|-.--.+++.+...--|.=+.+++- -+.+.+==..++++|..|+++|..-..-..+|..+-.+- .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl-------~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL-------K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 45555554555554443332322222222 222333334578899999999998877777777654321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
.+-.+.+.|=-|-.+|+..+.+|+++-.+|+...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555556666666666666666665443
No 213
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=53.32 E-value=18 Score=42.17 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCCcEEEEEEEeC---CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCH
Q 004803 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (729)
Q Consensus 34 ~k~WkkRWfVL~g---~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~ 110 (729)
.+.|+.-|+++-. ..++.|..+.+... ...+++.++.+..-+.+ ...+..++|.++.. ...++|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a----~~~iPl~~~~v~~pe~~-~~~D~~~~~k~~~s---~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRA----QATIPLPGVEVTIPEFV-RREDLFHVFKLVQS---HLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCcccccc----ccccccCccccCCCccc-ccchhcchhhhhhh---cceeeeccCCH
Confidence 4579999998743 47777877666432 23456777776643322 12233344555543 46899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004803 111 EDLYEWKTALELALA 125 (729)
Q Consensus 111 eE~~eWi~AL~~ai~ 125 (729)
+-.+.|+..|..|+.
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988764
No 214
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.08 E-value=76 Score=32.18 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
..-.++|+++..|+.++..|+.++..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999888888887553
No 215
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.54 E-value=2.3e+02 Score=28.26 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (729)
+|..-+..-..++..+..|+.||++|+.+|++|..
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333334445666677788888888888888765
No 216
>PLN02372 violaxanthin de-epoxidase
Probab=51.93 E-value=46 Score=37.57 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCchHHHHHHHhhhhhHHHHHHHHHH
Q 004803 576 SSGEEELAIQRLEITKNDLRHRIAKE 601 (729)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (729)
.|+-+--+++|||.+-.+....|.||
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e 380 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKE 380 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 45556667999999999999999888
No 217
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=50.76 E-value=3.1e+02 Score=30.85 Aligned_cols=104 Identities=27% Similarity=0.281 Sum_probs=63.7
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004803 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (729)
|.|..-..|+..|..-+++|+-||..-..-.+ +-.+.+..-++|-..-..|||.|-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec--------------------- 340 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC--------------------- 340 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 44555567888999999999998854221111 112222222222222222333332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCcccccc
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY--GSLSDACD 712 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~--~s~~~~~~ 712 (729)
..+++-.|+|=|.|..+--.|++++.+.+.+|-|.+.+-. .|.-|.|.
T Consensus 341 --~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCi 390 (442)
T PF06637_consen 341 --ARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCI 390 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 2356778899999999999999999999998888776543 34444443
No 218
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.45 E-value=1.9e+02 Score=29.93 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 004803 673 EEIALAEADVARLKQ 687 (729)
Q Consensus 673 ~eia~~E~~v~~le~ 687 (729)
.|+..||+++..++.
T Consensus 153 ~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 153 KKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555444443
No 219
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.23 E-value=2.7e+02 Score=36.12 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=3.3
Q ss_pred eEEEEeC
Q 004803 102 AFTLKAE 108 (729)
Q Consensus 102 ty~fqAe 108 (729)
.||+-..
T Consensus 111 ~Y~INg~ 117 (1163)
T COG1196 111 EYYINGE 117 (1163)
T ss_pred EEEECCc
Confidence 4555443
No 220
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=49.99 E-value=96 Score=27.56 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLS 708 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~ 708 (729)
..|++..++.|+ .|..-|..++.....+|.+-|.+|..+|-
T Consensus 31 ~eLs~e~R~~lE------~E~~~l~~~l~~~E~eL~~LrkENrK~~~ 71 (85)
T PF15188_consen 31 RELSPEARRSLE------KELNELKEKLENNEKELKLLRKENRKSML 71 (85)
T ss_pred cCCChHHHHHHH------HHHHHHHHHhhccHHHHHHHHHhhhhhHH
Confidence 567888887765 67777888888888888888888887763
No 221
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=49.21 E-value=80 Score=28.76 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=43.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhh----hhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHER----------RLALEQDVSRLQEQLQAERD 642 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~----~~~~~~~~~~~~~----------r~~Le~~V~~L~~~L~~e~~ 642 (729)
|.-++..=+++|.|||.==|-=++|= ...+.||-+..+. =-++|.|+..||.||..+.+
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ld 73 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLD 73 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999987666656655 5668888777665 23588999999999987654
No 222
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=48.60 E-value=28 Score=43.93 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=37.8
Q ss_pred cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCch
Q 004803 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (729)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~ 130 (729)
.+++-||+|......-..|-+.|.|..|++.|+..|+.++...|..
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4677789888754445789999999999999999999999876643
No 223
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=47.99 E-value=2.9e+02 Score=29.80 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 611 SLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (729)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (729)
..+...+.+.+....++..+..|+++|+.|+.
T Consensus 226 ~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 226 KQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666666666654
No 224
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=47.89 E-value=2e+02 Score=27.56 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004803 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le 686 (729)
.+++.++...++.......+++++..++++|+.+.. .++ +...++.-.|+...+.+ |.
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------~ls-----~~~~~~~~~~l~~~~~~---l~ 93 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------TLS-----EEERQKRQQELQQKEQE---LQ 93 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------S-----SHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccc-----hhHHHHHHHHHHHHHHH---HH
Confidence 344455555555555555556666666666655533 111 33334444444444444 55
Q ss_pred HHHHHHHHHHHHHHhh
Q 004803 687 QKVAELHHQLNQQRQH 702 (729)
Q Consensus 687 ~~~~~l~~~l~~~~~~ 702 (729)
+....+..++.++++.
T Consensus 94 ~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 94 QFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555566555554
No 225
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.79 E-value=3.5e+02 Score=28.85 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 677 LAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 677 ~~E~~v~~le~~~~~l~~~l~ 697 (729)
+|=+.|-+|+.+..+|++.|.
T Consensus 161 ~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333567899999999999886
No 226
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.47 E-value=2.7e+02 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 677 LAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 677 ~~E~~v~~le~~~~~l~~~l~ 697 (729)
..+.|+-+.|.++..|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456666777777777776664
No 227
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.33 E-value=2.6e+02 Score=32.90 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=75.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~ 657 (729)
|--|.|-.-.|.++|+-|. .||-..+.+-+ ..++.|.-++.--.+|.++.++=..-+..|++-+++-
T Consensus 573 EqYi~~~dlV~~e~qrH~~-------~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L--- 642 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVK-------LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL--- 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Confidence 4445555555555555543 12222222222 2345566677777778888888777888888766421
Q ss_pred CCCC-CCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccc
Q 004803 658 FSSS-RGMDSKTRAEL---EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDR 713 (729)
Q Consensus 658 ~~~~-~~~~~~~~~ll---~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~ 713 (729)
+..+ +++|+-+.+.+ .|+-.+-.++--|---+..++.....||.+...+..++-+.
T Consensus 643 ~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~ 702 (741)
T KOG4460|consen 643 LHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKP 702 (741)
T ss_pred HhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 1222 55666666555 46666666677777777777888888888887777766544
No 228
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=46.24 E-value=46 Score=39.27 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=46.3
Q ss_pred CCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeee---eCcEEcCCCcc--eee-----ccCCcceEEEecC-CCcc--e
Q 004803 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLT---LGGIDLNNSGS--VVV-----REDKKLLTVLFPD-GRDG--R 101 (729)
Q Consensus 35 k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~---L~~I~L~~~~s--v~~-----~~~Kk~~fvit~~-~~~g--r 101 (729)
...+..|+.|-.+.|.+-+-+.... ..+++ ...+.+..+.. ..+ ....++.|.++.- ...+ .
T Consensus 497 ~~~~~vylfLFnD~Llitk~k~~~~-----f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~ 571 (695)
T KOG3523|consen 497 RLSKTVYLFLFNDLLLITKKKSEGS-----FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQT 571 (695)
T ss_pred cccceeeeeeecceeeEeeecCCCc-----eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCce
Confidence 3456778888888777776543321 11111 11223322221 000 1123466777652 2223 4
Q ss_pred eEEEEeCCHHHHHHHHHHHH
Q 004803 102 AFTLKAETSEDLYEWKTALE 121 (729)
Q Consensus 102 ty~fqAeS~eE~~eWi~AL~ 121 (729)
.|+|+|++..|+.+|+.|+.
T Consensus 572 e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 572 ELLLSAESQSDRQRWISALR 591 (695)
T ss_pred eeeecCCchHHHHHHHHhcC
Confidence 79999999999999999996
No 229
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.05 E-value=1.7e+02 Score=34.63 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~-------~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
...|..||+|+.+|+.++.+ ++.-++.+.....| .+...+.+-.+..=+...|+.+|.++..|..+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55688899999999988864 33334433322111 122345566666666777777777777777776666
Q ss_pred HHHHHHHH
Q 004803 693 HHQLNQQR 700 (729)
Q Consensus 693 ~~~l~~~~ 700 (729)
+.+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 66665444
No 230
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.04 E-value=1.5e+02 Score=27.40 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=4.7
Q ss_pred HHHhhhhhHHHHHHHH
Q 004803 584 IQRLEITKNDLRHRIA 599 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (729)
-.+||+.+++||++.+
T Consensus 4 ~~~l~as~~el~n~La 19 (107)
T PF09304_consen 4 KEALEASQNELQNRLA 19 (107)
T ss_dssp ----------HHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3578899999998874
No 231
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.81 E-value=1.9e+02 Score=38.88 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=78.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA-----------LEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~-----------Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
+..|.+|+...++|+..|.+....+-.|+...++.|+...+-+.. |.-++.+|++.|..=.++-.=|+.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888889999999999999998888876555444 777999999999877777776776
Q ss_pred hhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 650 GLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 650 ~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
-|++-. ..+-.+..++-.+++.+...|..|+..-..|-..+...
T Consensus 1336 ~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1336 ELNRLQ------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 22334445555666666666666665555555544433
No 232
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.73 E-value=3.2e+02 Score=27.22 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=50.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 004803 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (729)
Q Consensus 606 ~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~l 685 (729)
+.|++..++=+..+..-|..|.+|+.+|+.-++-+.++++.=-+... ..+..+++++= .-++.+|..|
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~---------~~~~~ki~e~~---~ki~~ei~~l 143 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQ---------AKQELKIQELN---NKIDTEIANL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHH---HHHHHHHHHH
Confidence 44667777777778888889999999999988888777663111111 01112222222 2245566677
Q ss_pred HHHHHHHHHHHHH
Q 004803 686 KQKVAELHHQLNQ 698 (729)
Q Consensus 686 e~~~~~l~~~l~~ 698 (729)
..++..+++++-+
T Consensus 144 r~~iE~~K~~~lr 156 (177)
T PF07798_consen 144 RTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777664
No 233
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=45.69 E-value=3.2e+02 Score=27.14 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=55.1
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC--ChhHHHHHHHHHHH
Q 004803 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM--DSKTRAELEEIALA 678 (729)
Q Consensus 601 ~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~--~~~~~~ll~eia~~ 678 (729)
-.+-+..||+.|...+.++.+.=.+|.+-..+.....+.-...+..|..-+. ..++|++-.++ -...=.+..+++.+
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~-gg~~f~i~~~~~~~~~r~~l~~~~~~~ 91 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT-GGAPFSIDEYLALRRYRDVLEERVRAA 91 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777776666655555555544444444444444444444444333 22233322222 22334566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 679 EADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~~~ 700 (729)
|.++..|.+.|..-+.+|...+
T Consensus 92 e~~~a~l~~~l~~~~~~ia~~~ 113 (158)
T PF09486_consen 92 EAELAALRQALRAAEDEIAATR 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777776443
No 234
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.57 E-value=2.9e+02 Score=35.50 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~ 654 (729)
++++....++.+--|.+..++|.+++++.+.-...++.+...+
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 3555556677777788889999999999888888888776543
No 235
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.41 E-value=3.9e+02 Score=34.01 Aligned_cols=109 Identities=13% Similarity=0.195 Sum_probs=65.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (729)
||-+++.|-..|..|...|.+=.+.-- -=++++.....+..++.-+.-|+..++..|.....=-.-++..+.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~~~-e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~------- 721 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKRRK-EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID------- 721 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 688899999999999999975443100 112223333334444444444444444444322211111222221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 660 ~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
-++++.-++..+|-..|.+.-.|+.++..+...++..
T Consensus 722 ---~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~ 758 (1141)
T KOG0018|consen 722 ---EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKG 758 (1141)
T ss_pred ---hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999998888877754
No 236
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.30 E-value=2.7e+02 Score=33.18 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=61.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004803 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLSMSSGQ 657 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~~~~Le~~l~~~~~~ 657 (729)
+=+..|.||+....+++.+|..-+..|..==...-.+-+.+.++-.+|..|+ .-|+... +..++..|..+..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~--~~~i~~~l~~a~~----- 83 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEI--ENEIQPQLRDAAE----- 83 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHH-----
Confidence 3467899999999999999988877776633333455667777778888888 3333323 2334444444433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 658 ~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+.+.|-.|++..+.-+.-|| ++..++.+|.
T Consensus 84 ---------e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~ 113 (593)
T PF06248_consen 84 ---------ELQELKRELEENEQLLEVLE-QLQEIDELLE 113 (593)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33445555555544444444 4555555554
No 237
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.04 E-value=3.4e+02 Score=35.38 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred cccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHH
Q 004803 558 AFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKE 601 (729)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (729)
++||=.=.-..+. .-||.-+++.+-++|+.....|+.-.++.
T Consensus 582 slyGl~LdL~~I~--~pd~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 582 SLYGLSLDLSAID--VPDYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred ccceeEeehhhcC--CchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 7788653222222 22455677777788887777776655443
No 238
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=44.46 E-value=4e+02 Score=33.87 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 672 LEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
-.++..++.++..++.++..+..+|.
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 239
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.41 E-value=1.3e+02 Score=35.75 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=62.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE-----R-RLALEQDVSRLQEQLQAERDLRAALEVGLSMSS 655 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-----~-r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~ 655 (729)
.-++||+.--.+|+..|-.-=|.+..|-+.|++=+...+. + =.+++.++.+|++.|+++......|++=|..-.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777666777777666556666676666544433321 1 124888999999999999998888887764321
Q ss_pred --CCC-CCCCCCChhHHHHH--HHHHHHHHHHH
Q 004803 656 --GQF-SSSRGMDSKTRAEL--EEIALAEADVA 683 (729)
Q Consensus 656 --~~~-~~~~~~~~~~~~ll--~eia~~E~~v~ 683 (729)
-.+ .+.-..|-+.-+.+ +.|+.+|++..
T Consensus 509 k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~g 541 (652)
T COG2433 509 KMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541 (652)
T ss_pred HHHhhhhcCCCcceehhhhhhHHHHHhHHHhhc
Confidence 111 12344666555544 36666666543
No 240
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.10 E-value=1.9e+02 Score=38.56 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
+-..|++....|+..|+.++...++|..+-.
T Consensus 514 ~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~ 544 (1486)
T PRK04863 514 QLQQLRMRLSELEQRLRQQQRAERLLAEFCK 544 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888999999999999999999998755
No 241
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=44.09 E-value=94 Score=29.11 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQKVAELH 693 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~ 693 (729)
||..|+..|..||.++..|.
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777776664
No 242
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=43.82 E-value=2.8e+02 Score=33.42 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=57.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (729)
..|+.|+....+++.+|++--..=..++ .+-..+.+....|+.++.+++++..+-..+..+++.|
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 485 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELL----RQLETLKEAIEALRKTLDEKTKQKINAFELERAITIA----------- 485 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------
Confidence 3778888888888877763222222222 2223344444556666666666665555555555442
Q ss_pred CCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 662 RGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 662 ~~~~~~~~~ll~eia--~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
.+++++|.++. +.+.-+..||..+.+.-.+|.+.
T Consensus 486 ----~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 486 ----DKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24466666553 34455677888888888888764
No 243
>PRK02224 chromosome segregation protein; Provisional
Probab=43.65 E-value=3e+02 Score=34.29 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=9.0
Q ss_pred eCCHHHHHHHHHHH
Q 004803 107 AETSEDLYEWKTAL 120 (729)
Q Consensus 107 AeS~eE~~eWi~AL 120 (729)
+....+...|+..|
T Consensus 108 ~~~~~~~~~~i~~l 121 (880)
T PRK02224 108 IDGARDVREEVTEL 121 (880)
T ss_pred ccChHHHHHHHHHH
Confidence 34556777777665
No 244
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.34 E-value=4.9e+02 Score=28.64 Aligned_cols=32 Identities=22% Similarity=0.050 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQAS 611 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 611 (729)
.+.+...++.++.|.+.-..++.+-|.++...
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l 177 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKL 177 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777666666666665544
No 245
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.27 E-value=3.6e+02 Score=29.93 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=51.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 004803 602 ARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (729)
Q Consensus 602 ~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~ 681 (729)
--+|+-||..|+.-++. .-+-|.|...|-+.|.+++....+|..--. .++..++.+=.+-| +-
T Consensus 140 ~EEn~~lqlqL~~l~~e----~~Ekeeesq~LnrELaE~layqq~L~~eyQ---atf~eq~~ml~kRQ----------~y 202 (401)
T PF06785_consen 140 REENQCLQLQLDALQQE----CGEKEEESQTLNRELAEALAYQQELNDEYQ---ATFVEQHSMLDKRQ----------AY 202 (401)
T ss_pred HHHHHHHHHhHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccchhhhHHHH----------HH
Confidence 35688888887633322 334567788888888888877777765433 44554544333333 45
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004803 682 VARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 682 v~~le~~~~~l~~~l~~~~ 700 (729)
|.+||.||.||-+.+..--
T Consensus 203 I~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 203 IGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888777665433
No 246
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.21 E-value=1.7e+02 Score=37.49 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
++..-..+.-+|.+||.+|+.|.+-|..+.+-|. + ++-.-+--++|.....++..+..++.++.-
T Consensus 747 l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-s--------------q~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~ 811 (1317)
T KOG0612|consen 747 LRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-S--------------QEQEVNTKMLEKQLKKLLDELAELKKQLEE 811 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-h--------------HHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456888999999999999999999999876 2 222222255666666666666666666665
Q ss_pred HHhhhcC
Q 004803 699 QRQHHYG 705 (729)
Q Consensus 699 ~~~~~~~ 705 (729)
+..+-.|
T Consensus 812 ~~~q~~~ 818 (1317)
T KOG0612|consen 812 ENAQLRG 818 (1317)
T ss_pred HHHHhhc
Confidence 5554444
No 247
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.05 E-value=1.3e+02 Score=26.42 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 588 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
...+.++.++|+--+-+...++-.+..=-.+-..-+..-|.|+.+|+.+|+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477788888888888888888877666666666677788888888888853
No 248
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.91 E-value=2.6e+02 Score=34.39 Aligned_cols=87 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---------~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
++-|-+-+-|+..--.|...|+ +|=|+-+|.|++ .|...|..++.||.++|+.+..++.+-
T Consensus 312 gdseqatkylh~enmkltrqka------dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~el---- 381 (1265)
T KOG0976|consen 312 GDSEQATKYLHLENMKLTRQKA------DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL---- 381 (1265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----
Q ss_pred HhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 649 VGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 649 ~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
|.||++-|-+++.|--|+.+|-.|-+
T Consensus 382 --------------------qsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 382 --------------------QSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHhhhhhhh
No 249
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.73 E-value=1.3e+02 Score=34.33 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
.+|.++-.+|+.+++.=+.-|..+...+..... -...+.+|++++..|-+++..||+++..+..++.+....
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQAKR-------KGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444445555544432000 012456788888889999999999998888888876653
No 250
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=42.57 E-value=1.7e+02 Score=31.23 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
|+|.+...+|.-+=+-++||+++- +.|..+..-|+.++.+|..+|.+++
T Consensus 213 rnreaa~Kcr~rkLdrisrLEdkv-------------------------------~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 213 RNREAASKCRKRKLDRISRLEDKV-------------------------------KTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------------------------------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 456666777776666677766543 3344455566777888888888777
Q ss_pred HHHHHHHhhh
Q 004803 694 HQLNQQRQHH 703 (729)
Q Consensus 694 ~~l~~~~~~~ 703 (729)
+++-......
T Consensus 262 ~~V~~hi~ng 271 (279)
T KOG0837|consen 262 QKVMEHIHNG 271 (279)
T ss_pred HHHHHHHhcc
Confidence 6665544433
No 251
>PLN02678 seryl-tRNA synthetase
Probab=42.39 E-value=71 Score=36.84 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
+-.+|.++-.+|+.+++.=+.-|..+...+... . .-...+.+|++++..|-+++..||.++..+..+|.+...
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~----k---~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKL----K---IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555544210 0 001345677788888888888888888888777776543
No 252
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.31 E-value=3.6e+02 Score=32.28 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=50.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~ 660 (729)
+-.|.+++.+=..|+ .+|..|++.++.-|......+..|++=-.+....++..+.+
T Consensus 421 ~~~i~~~~~~ve~l~-------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei----------------- 476 (652)
T COG2433 421 EKRIKKLEETVERLE-------EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI----------------- 476 (652)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------------
Confidence 334455555544444 56778888888777666655555554444444444444433
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 661 ~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
+++-.+|..||-++.+=+..|..|...|.+-+
T Consensus 477 --------~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 --------RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555556666666665554
No 253
>PRK12704 phosphodiesterase; Provisional
Probab=42.12 E-value=5e+02 Score=30.65 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004803 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~ 707 (729)
.+|...+.++..+++++..+..+..++-+.-+|-+
T Consensus 117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555555666666666665555555444433
No 254
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.88 E-value=96 Score=30.57 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=44.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-----~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
.+..|+..-.+|+.++..--+.+..|.+.|..-.. .+...-.+|++++..|+.+|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888888888888888766555 4577777889999999888874
No 255
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.52 E-value=2.2e+02 Score=30.41 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
++|..+|++|..|+..|..|+.+...=|+
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 46777788888888888877777664443
No 256
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.46 E-value=6.1e+02 Score=29.24 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.++|...++.++.++.-|+.++..|..++.+.+.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666554443
No 257
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.34 E-value=3.5e+02 Score=26.37 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=58.1
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDL-RAALEVG 650 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~---~~~r~~Le~~V~~L~~~L~~e~~~-~~~Le~~ 650 (729)
-++...++.|=..+..|...++-+.++-+-||+.+++-...+ .++-..||+.+..++.+..++..- |-+|.-+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 456677888888889999999999999999999886555443 556778999999999998877665 7777654
No 258
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.12 E-value=1.5e+02 Score=31.52 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
.|+.+|..|+.+|++.+.|-.-||.-|
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL 29 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDL 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777766554
No 259
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.71 E-value=3.2e+02 Score=25.80 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=24.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
.|.+|+..|..|...|.+=.+.|..+++. ..+-..|++++..|+.+.
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~--------~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRAL--------KKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 34555555666665555555555554333 223334555555555543
No 260
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.68 E-value=3.8e+02 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 619 (729)
+..+..++..-+.|+..+..+-+-++.+++.++.-+...
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666555555555555554444433
No 261
>PRK03918 chromosome segregation protein; Provisional
Probab=40.65 E-value=4.9e+02 Score=32.30 Aligned_cols=11 Identities=0% Similarity=-0.106 Sum_probs=5.5
Q ss_pred cchhhhccccc
Q 004803 312 SAVAACMAPLL 322 (729)
Q Consensus 312 ~NLAivfgP~L 322 (729)
.+..+.|.|.+
T Consensus 15 ~~~~i~f~~g~ 25 (880)
T PRK03918 15 KSSVVEFDDGI 25 (880)
T ss_pred cCceEecCCCc
Confidence 33445666533
No 262
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.49 E-value=5.7e+02 Score=33.13 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred HHHHHHHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCC
Q 004803 580 EELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAER--DLRAALEVGLSMS 654 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~---~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~--~~~~~Le~~l~~~ 654 (729)
.++....|++-..-|..++ ..|.-+|..+|.-+..|+.-...+-..||+.|..||.++..-+ .-..+++.+-...
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~ 250 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA 250 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555444444444 3466788888888887777777778889999999998886522 2233444443210
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 655 SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 655 ~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
.-...+|+.++++++.-..|=.++...-++++.|..
T Consensus 251 ----~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~ 286 (1109)
T PRK10929 251 ----EQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIAS 286 (1109)
T ss_pred ----HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234555666665555555555555444444433
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.47 E-value=4.3e+02 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+.|=-|.+.||+..-+|..+|.+|+.++.
T Consensus 173 k~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 173 KRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 44445556666666666666666666544
No 264
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=40.37 E-value=69 Score=37.53 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=45.0
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004803 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~---~~~~r~~Le~~V~~L~~~L~~ 639 (729)
-|-+.||||-.++.+=--+|-|||.-++.+|++ |.++-.+||.|+++++..+..
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999998889999999999999885 577778888888888776643
No 265
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.29 E-value=2.3e+02 Score=28.23 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.=|.++..+-.+|..+|..+..++.++......+..|..
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988888887776654
No 266
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.28 E-value=2.8e+02 Score=30.68 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
...+.+.-|+++|.+++++|.+
T Consensus 167 ~~~~a~~fl~~ql~~~~~~l~~ 188 (362)
T TIGR01010 167 ARKDTIAFAENEVKEAEQRLNA 188 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888864
No 267
>PF14992 TMCO5: TMCO5 family
Probab=40.24 E-value=1.7e+02 Score=31.65 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
...-.+.+-+++++|-+|.++++++......+
T Consensus 112 q~sk~~lqql~~~~~~qE~ei~kve~d~~~v~ 143 (280)
T PF14992_consen 112 QFSKNKLQQLLESCASQEKEIAKVEDDYQQVH 143 (280)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346778888999999999988876554443
No 268
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.17 E-value=1.4e+02 Score=29.65 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
.|..|+.+|..|.+.|+.+|...|.-+..- --.+-..+++|..=|+.||+++-.|+.++..+..+.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 466677788888888888887766432100 012345667888888888888888887777766654
No 269
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=40.12 E-value=23 Score=41.80 Aligned_cols=153 Identities=14% Similarity=-0.004 Sum_probs=92.4
Q ss_pred CCCCCCcccccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHH-hcC-CccCCCCCC
Q 004803 158 KRPVKSLVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY-EQG-KTEFSADED 230 (729)
Q Consensus 158 k~~~~~~vFG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~l-d~g-~~~~~~~~d 230 (729)
..+.+..+|+ .|..+.... .-.+.-..+|..+....+....|.|+.+|. .+..++..- +.+ ++.+..+..
T Consensus 32 ~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~e~e~~~~kie~~~d~~ 108 (577)
T KOG4270|consen 32 VFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPGA--KIDTLKEEEEECGMKIEQPTDQR 108 (577)
T ss_pred cCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCcc--hhhhhhchHHhhcCccccCcchh
Confidence 4555566777 554444321 123555688888888899999999999993 344444433 333 366677778
Q ss_pred ccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccc
Q 004803 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHE 306 (729)
Q Consensus 231 ~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~----ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~ 306 (729)
.+++.++.+.+++.+ ++.++.-|...+.......... ...+++. ...|..|+ +-+++.|+... ..
T Consensus 109 ~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~l 177 (577)
T KOG4270|consen 109 HADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----RL 177 (577)
T ss_pred hhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----hh
Confidence 899999999999998 6776665554444322221111 2233442 35677777 66666666654 34
Q ss_pred cCCCccchhhhccccccC
Q 004803 307 NRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 307 NkMt~~NLAivfgP~Llr 324 (729)
+.|.--+...+|.++--.
T Consensus 178 ~~e~Gl~eEGlFRi~~~~ 195 (577)
T KOG4270|consen 178 LLEGGLKEEGLFRINGEA 195 (577)
T ss_pred hhhcCccccceeccCCCc
Confidence 445555555666655443
No 270
>PRK02224 chromosome segregation protein; Provisional
Probab=39.88 E-value=3.4e+02 Score=33.80 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.|..++..+..|+..| .+++...+...+.++.++..+..+...|++....++.+|.
T Consensus 280 ~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~ 338 (880)
T PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 2222222333344455555555555556655555554444
No 271
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=39.85 E-value=96 Score=27.91 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhC
Q 004803 623 RLALEQDVSRLQEQLQA------ERDLRAALEVGLS 652 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~------e~~~~~~Le~~l~ 652 (729)
...|+.++++||+||.. |+==|.||+.+|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 46788899999998864 6667788887774
No 272
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=39.84 E-value=1.3e+02 Score=34.37 Aligned_cols=64 Identities=30% Similarity=0.344 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhC
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASL-ERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
.|.-+++.|.-+ |-|-.||-+|..- .--|.+|+--++. |+|| +.|++||+.|+.+|.+++.-|.
T Consensus 501 ~eTll~niq~ll-kva~dnar~qekQiq~Ek~ELkmd~lr-erelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQEKQIQLEKTELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666544 4466788877542 1112222211111 2232 4588888889999888887665
No 273
>PRK11519 tyrosine kinase; Provisional
Probab=39.56 E-value=4.1e+02 Score=32.57 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=45.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 004803 604 GNAILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADV 682 (729)
Q Consensus 604 ~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v 682 (729)
.++-++..+++|.+....-..-|++.+.+|+++|+. |..+...-. ..+.+. ++..++.+|..++.++..+
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~-----~~~~vd----~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ-----DKDSVD----LPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCC----chHHHHHHHHHHHHHHHHH
Confidence 344455555656566666666777777777777764 333322211 112221 3466677777777666666
Q ss_pred HHHHHHHHHH
Q 004803 683 ARLKQKVAEL 692 (729)
Q Consensus 683 ~~le~~~~~l 692 (729)
..|+.+..+|
T Consensus 321 ~~l~~~~~~l 330 (719)
T PRK11519 321 NELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 274
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.45 E-value=2.2e+02 Score=34.93 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 580 EELAIQRLEITKNDLRHRIAKEAR----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~----~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
.+..|+.|.....+|+.+++.... .+-.+++. +.++.+-+.++++++.++...++.|...-.+-+.
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l----~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~ 355 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAA----KSSLADLDAQIRSELQKITKSLLMQADAAQARES 355 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888877764322 11222222 3344444445556666655555544443333333
No 275
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.18 E-value=1e+02 Score=26.50 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
.+++.++.-|++|..+|..|+++...|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788999999999999999999855554
No 276
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=39.15 E-value=23 Score=42.18 Aligned_cols=102 Identities=23% Similarity=0.198 Sum_probs=58.8
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceee-eeeCcEEcCCCccee------eccCCcceE
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN-LTLGGIDLNNSGSVV------VREDKKLLT 91 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~-i~L~~I~L~~~~sv~------~~~~Kk~~f 91 (729)
..-+| |+.+++.+. =++.||.|.+-.++|||...+..|++-..+. ...+..+-..+.+.. ..-.++++.
T Consensus 358 ~~~~G--wlT~vk~g~--skkv~~alv~~~~~~~k~~~d~rp~g~l~~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~ 433 (936)
T KOG0248|consen 358 ASISG--WLTRVKCGL--SKKVFAALVNQKLMFFKNSNDLVPNGFLCLQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDS 433 (936)
T ss_pred CCcCc--ceeeecccc--ceeeeeeeeeeeeEEeecccccccccccchhhhhcceeeccCCchhhhhhhcCccccccCce
Confidence 34579 444555433 3789999999999999998877765511100 000111111111100 001233555
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
++.+. ..+-+|||-..+.++-+-|.--+..|..
T Consensus 434 l~~~~-~~~~p~yLi~~t~e~k~~wly~l~~A~g 466 (936)
T KOG0248|consen 434 LCVQI-ANEDPVYLILRTSEDKEKWLYYLKSASG 466 (936)
T ss_pred EEecc-CCCCCEEEEeeeccccceeeeeehhhcc
Confidence 55543 3467888888888999999888876654
No 277
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=39.09 E-value=41 Score=38.67 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=42.4
Q ss_pred HHHHhhhhh--hhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 004803 598 IAKEARGNA--ILQA-SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (729)
Q Consensus 598 ~~~~~~~n~--~~~~-~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~ 656 (729)
|-+|+++|- +||. ++---=-++.+.-.+|+||-++++++|.+|+..|+-||.-|-...+
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l~ 658 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKMLK 658 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677763 3332 1222233777888899999999999999999999999987754433
No 278
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.90 E-value=3.2e+02 Score=33.57 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=16.2
Q ss_pred CCCchHHHHHHHhhhhhHHHHHHHH
Q 004803 575 DSSGEEELAIQRLEITKNDLRHRIA 599 (729)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (729)
|....+|.+++-=-+....|+.||.
T Consensus 13 ~g~~~Ee~Ll~esa~~E~~~~~~i~ 37 (717)
T PF09730_consen 13 DGEEREESLLQESASKEAYLQQRIL 37 (717)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777766666677777775
No 279
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.89 E-value=3.1e+02 Score=25.11 Aligned_cols=73 Identities=26% Similarity=0.309 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHHH
Q 004803 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDS--KTRAELEEIALAEADVAR 684 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~--~~~~ll~eia~~E~~v~~ 684 (729)
+++..+.+ +.+.++.-.+|++.+.+...+|+. ||.-+.+ +|. .+.+|=-+|+-++.++..
T Consensus 22 ~~~~~l~~-~~a~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~----------LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 22 IFWLWLRR-TYAKREDIEKLEERLDEHDRRLQA-------LETKLEH----------LPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----------CCCHHHHHHHHHHHHHHHhHHHH
Confidence 45555544 456677777788888877777753 5555532 333 345666677777777777
Q ss_pred HHHHHHHHHHHHH
Q 004803 685 LKQKVAELHHQLN 697 (729)
Q Consensus 685 le~~~~~l~~~l~ 697 (729)
|+.++..+..++.
T Consensus 84 l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 84 LSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
No 280
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=38.60 E-value=3.4e+02 Score=34.99 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=25.7
Q ss_pred hhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 605 NAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (729)
Q Consensus 605 n~~~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~L 647 (729)
=|++|-+. +.+=....+.+..|+.+|.+|+++|...+.....+
T Consensus 489 ~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 489 KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555443 22333445667778888888888877665554444
No 281
>PRK03918 chromosome segregation protein; Provisional
Probab=38.50 E-value=4.7e+02 Score=32.50 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 624 LALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
..++..+.+|+..++....++..++
T Consensus 348 ~~~~~~~~~l~~~~~~l~~~~~~~~ 372 (880)
T PRK03918 348 KELEKRLEELEERHELYEEAKAKKE 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666655554
No 282
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.49 E-value=3e+02 Score=31.72 Aligned_cols=127 Identities=19% Similarity=0.290 Sum_probs=79.4
Q ss_pred ccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhh-----hhhhhhhHHHHHH-------HHH-HHHHHHHHHHHHHHHHHH
Q 004803 572 ESIDSSGEEELAIQRLEITKNDLRHRIAKEARG-----NAILQASLERRKQ-------ALH-ERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~-------~~~-~~r~~Le~~V~~L~~~L~ 638 (729)
+.++--.+-|+-.++|+..-..++.+|-.=.+- =+-||..+.=|+. +.+ .+-.+|||||.-+-++.+
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777888887777777766322110 1223333222221 011 223569999999988888
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 639 AERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 639 ~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
.-..+++-|-++|..-+-.++ --..-.-++|+..+|--.+++|.+.=..-.+|+.|++..
T Consensus 363 ~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888864221111 011223568899999999999999888888888887744
No 283
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=38.26 E-value=94 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 675 IALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l 696 (729)
...+.++|-.||++|.+|..++
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888888888887765
No 284
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.23 E-value=8.1e+02 Score=31.25 Aligned_cols=120 Identities=22% Similarity=0.188 Sum_probs=71.0
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhH-------HHHHHHH--HHHHHHHHHHHHHH--HH--HHHHHHHH
Q 004803 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL-------ERRKQAL--HERRLALEQDVSRL--QE--QLQAERDL 643 (729)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~-------~~~~~~~--~~~r~~Le~~V~~L--~~--~L~~e~~~ 643 (729)
|-.-|+-|+|+-..--+-+.+|..+.+.+.--+..+ .-.+... |.+++--..++.-| =. |+.-|..+
T Consensus 59 cp~kelfi~riq~ldlete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~ 138 (1195)
T KOG4643|consen 59 CPTKELFIQRIQILDLETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIA 138 (1195)
T ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899998888888888877666665544433 1122233 55555444443322 22 33444444
Q ss_pred HHHHH-HhhCCCCC-------CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 644 RAALE-VGLSMSSG-------QFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 644 ~~~Le-~~l~~~~~-------~~~~~-~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
-.-|+ +|++...- ....| ...-.+-.+|=.|||.+|+-|..|++++.+=--+|
T Consensus 139 e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enl 200 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENL 200 (1195)
T ss_pred HHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454 56655321 22233 33445677888999999999999988876543333
No 285
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.06 E-value=3.9e+02 Score=34.07 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHH
Q 004803 580 EELAIQRLEITKNDLRHRIAK 600 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~ 600 (729)
-+-.|.+.+.....||.+|.+
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~ 306 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEE 306 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777743
No 286
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.99 E-value=2.6e+02 Score=32.50 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
+++-.|+..|..++..|...+.+|..||..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677778888888999999999999888853
No 287
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.83 E-value=6.4e+02 Score=30.69 Aligned_cols=114 Identities=24% Similarity=0.227 Sum_probs=72.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh---h----hhhhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004803 582 LAIQRLEITKNDLRHRIAKEAR---G----NAILQASLERRK------QALHERRLALEQDVSRLQEQLQAERDLRAAL- 647 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~---~----n~~~~~~~~~~~------~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~L- 647 (729)
..||.|+-.+..+-.++. |++ . +.+||.-+++=. ..+..+-.-||-++.+|+.+|+....++.-+
T Consensus 248 dqlqel~~l~~a~~q~~e-e~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~ 326 (716)
T KOG4593|consen 248 DQLQELEELERALSQLRE-ELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMG 326 (716)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 356666666655555543 333 2 344555554333 3455666779999999999999988776652
Q ss_pred ------------------HHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 648 ------------------EVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 648 ------------------e~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
...|+....++..|..+|..+..+|.|.-.==+.+.-.+.++..||-.|
T Consensus 327 ~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl 393 (716)
T KOG4593|consen 327 SLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETL 393 (716)
T ss_pred ccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1234444567778899999999888876544445555566666666553
No 288
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.82 E-value=2.9e+02 Score=25.37 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
..+.+.++++-..|.+...+|+.++.+=..+...|+..-
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556677777777777888888877777777777765
No 289
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=37.74 E-value=1e+02 Score=29.58 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (729)
-|+-|.+||.|||. ||.- ++.+..-...|-.-|+-|+..|..|+.--.-|..+
T Consensus 23 WeiERaEmkarIa~-------LEGE----~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 23 WEIERAEMKARIAF-------LEGE----RRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred hHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 35668899999973 3332 44444555566777888888888888765554443
No 290
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.49 E-value=4.4e+02 Score=35.29 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 674 EIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
.++.++.++..||+++..+...+.+-++.
T Consensus 450 klee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 450 KEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777776666555443
No 291
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=37.48 E-value=5.8e+02 Score=32.51 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=8.0
Q ss_pred cHHHHHHHHHHHhcCCC
Q 004803 181 PSFLEKALRFLEKFGTK 197 (729)
Q Consensus 181 P~il~~~i~~L~~~Gl~ 197 (729)
|.-...+..++...|+.
T Consensus 116 ~~~~~~~~~~l~~~~~~ 132 (1164)
T TIGR02169 116 RVRLSEIHDFLAAAGIY 132 (1164)
T ss_pred cccHHHHHHHHHHcCCC
Confidence 33344445555555543
No 292
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.48 E-value=4.1e+02 Score=29.20 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
++.+..+.....+||.+..+|+++-.
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555556666666554433
No 293
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.41 E-value=6.8e+02 Score=29.50 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 617 QALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L 637 (729)
+...++|.++++++...+.+|
T Consensus 58 eE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766555555
No 294
>PF13514 AAA_27: AAA domain
Probab=37.29 E-value=6.7e+02 Score=32.41 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=79.3
Q ss_pred cccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhH------------HHHHHHHHHHHHH---HHHHHHHHHH
Q 004803 571 VESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL------------ERRKQALHERRLA---LEQDVSRLQE 635 (729)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~------------~~~~~~~~~~r~~---Le~~V~~L~~ 635 (729)
.+.++++.+....+++++.....++.+|..-...-+.|+..+ ..+=.+|++.+.. .++|+.+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888877788777777777777754333333333332 1112244444433 4556666666
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 636 QLQAERDLRAALEVGLSMSSGQF------SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 636 ~L~~e~~~~~~Le~~l~~~~~~~------~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
++..-..--..|..-|+ +.... .+|......+++|+.+-..++..+..++.++.+...++.+-+.+
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433334444566 22111 13334445778888888999999999988888888888765554
No 295
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.17 E-value=1.3e+02 Score=25.09 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
++.|+.||+++|.+=..--..++.-|+++.-.-.-|..+= ...-+-++-++.++..|++.+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVv---e~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVV---EKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777655555555555553311111233222 333344555677777777777665
No 296
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=37.07 E-value=6e+02 Score=32.42 Aligned_cols=19 Identities=0% Similarity=-0.193 Sum_probs=10.2
Q ss_pred ccccCCCHHHHHHHHHHHh
Q 004803 201 ILRQAADVEEVDRRVQEYE 219 (729)
Q Consensus 201 IFR~sg~~~~i~~L~~~ld 219 (729)
.|++.|.......+...+.
T Consensus 109 ~~~~n~~~~~~~~~~~~l~ 127 (1164)
T TIGR02169 109 YYYLNGQRVRLSEIHDFLA 127 (1164)
T ss_pred eEEECCccccHHHHHHHHH
Confidence 4666665544555555443
No 297
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.06 E-value=4.8e+02 Score=28.91 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 671 ELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 671 ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
...+++.+++++..++.++..++.+|.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666666665555555543
No 298
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.75 E-value=5.7e+02 Score=27.51 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004803 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~ 689 (729)
+....+.+++...+.+|+.++..+++++..-...-..=..+- .-+-...--+..++.-+.+..+++++..+..+.
T Consensus 131 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~ 205 (301)
T PF14362_consen 131 ASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQI 205 (301)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334445555555566666666666666554443322222211 111112334566777777777777777777777
Q ss_pred HHHHHHHH
Q 004803 690 AELHHQLN 697 (729)
Q Consensus 690 ~~l~~~l~ 697 (729)
.....+|.
T Consensus 206 ~~~~~~l~ 213 (301)
T PF14362_consen 206 DAAIAALD 213 (301)
T ss_pred HHHHHHHH
Confidence 66666665
No 299
>PRK11281 hypothetical protein; Provisional
Probab=36.74 E-value=4.1e+02 Score=34.44 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=35.7
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 599 ~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
..|..+|..+|.-+..|+.-+..+-..+|+.|..||.++.+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999998888888888888899999999998876
No 300
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.67 E-value=98 Score=35.83 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=41.6
Q ss_pred ccCCCCchHHHHHHHhhhhh---HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
.-|+-..++-+..-+|+... .+|+.+|+++-++...+. ++++.+.++=.+||.|+.+|+.|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~s----aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLN----KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666554 788888887732222222 555566666668999999999998
No 301
>PLN02320 seryl-tRNA synthetase
Probab=36.62 E-value=1.9e+02 Score=33.99 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
..+.+|++|+..|-.++..||+++..+..+|.+.-.
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888887776554
No 302
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.56 E-value=5.6e+02 Score=30.04 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=51.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHH
Q 004803 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEAD 681 (729)
Q Consensus 603 ~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~ 681 (729)
+..-.+|-.++--|..++..+.+|.+==.+-++-||.-..+..-|..+... +.+. .+.. ...-+|=.|-..+.++
T Consensus 214 ~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~--~el~~l~~E~~~~~ee 289 (511)
T PF09787_consen 214 RESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNS--IELEELKQERDHLQEE 289 (511)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccch--hcchhhHHHHHHHHHH
Confidence 333333333333344444444444444444555555555555556652211 1111 0000 2223555777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 004803 682 VARLKQKVAELHHQLNQQRQHHYG 705 (729)
Q Consensus 682 v~~le~~~~~l~~~l~~~~~~~~~ 705 (729)
+..|+.++..|+.++.+......+
T Consensus 290 ~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 290 IQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888877655554433
No 303
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.52 E-value=3.5e+02 Score=31.21 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=46.1
Q ss_pred hhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 004803 604 GNAILQASLER----RKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (729)
Q Consensus 604 ~n~~~~~~~~~----~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~ 678 (729)
.|++.++.++. |+.....-+.-|++++.+++++|.+ |..+...... .|.+ +|.....+...|+.+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~-----~~~~-----~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE-----NGGI-----LPDQEGDYYSEISEA 209 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Cccc-----CccchhhHHHHHHHH
Confidence 46766666653 4455566777899999999999874 4444443221 1211 222333344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004803 679 EADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~ 698 (729)
+..+..++.++..+..++..
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~ 229 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDA 229 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444433
No 304
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.49 E-value=5.2e+02 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 615 RKQALHERRLALEQDVSRLQEQ 636 (729)
Q Consensus 615 ~~~~~~~~r~~Le~~V~~L~~~ 636 (729)
+++.++.+.-.++.++++|+.+
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555543
No 305
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.48 E-value=37 Score=41.41 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~----~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
+.++.+|+..|..|.+.|..-......++..+........ ....+......|-.+|..||.++.+|++++..|..+
T Consensus 453 ~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 453 DEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666665555555555554432211111 113344566678889999999999999999999999
Q ss_pred HHH
Q 004803 696 LNQ 698 (729)
Q Consensus 696 l~~ 698 (729)
|.+
T Consensus 533 l~~ 535 (722)
T PF05557_consen 533 LEK 535 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 306
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=36.18 E-value=17 Score=28.98 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.3
Q ss_pred CCCcEEEEEEEeCCeEEEEeCC
Q 004803 34 WKSWKKRWFILTRTSLVFFKND 55 (729)
Q Consensus 34 ~k~WkkRWfVL~g~~L~yYKd~ 55 (729)
.+.|.|.|.++.+.+|.+||--
T Consensus 27 Vr~wEKKWVtv~dtslriyKWV 48 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKWV 48 (52)
T ss_pred HHHHhhceEEeccceEEEEEEE
Confidence 4679999999999999999853
No 307
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=36.15 E-value=4.3e+02 Score=28.40 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=47.7
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHH
Q 004803 596 HRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE---QLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAEL 672 (729)
Q Consensus 596 ~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~---~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll 672 (729)
..|+++.+.++- .+|.+.++.+-..|+.+..+|+. .+|...+++.. .+++.
T Consensus 155 ~~i~~~~~~~e~-----d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~---------------------~~e~~ 208 (264)
T PF07246_consen 155 QLIKEKTQEREN-----DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKIL---------------------HEELE 208 (264)
T ss_pred HHHHHHhhchhh-----hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHH---------------------HHHHH
Confidence 334444444443 55555665555556666666655 33333333221 24556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004803 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGS 706 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s 706 (729)
+.++-+..+..+|+.+..+.+.....+|+...-+
T Consensus 209 ~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 209 ARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 6666666677777777777777777677665443
No 308
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.99 E-value=7.1e+02 Score=28.41 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
-+..+.+|+.-+-+.||+|+--..-||.-++ .-++--..||.-|=.+++..|++|.-..+.-.+.-+
T Consensus 238 Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN-------------d~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~ 304 (395)
T PF10267_consen 238 LKEQYQREYQFILEALQEERYRYERLEEQLN-------------DLTELHQNEIYNLKQELASMEEKMAYQSYERARDIW 304 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Confidence 3444667777777788888877777776654 334555667777777777777777666655544444
Q ss_pred hh
Q 004803 702 HH 703 (729)
Q Consensus 702 ~~ 703 (729)
+.
T Consensus 305 E~ 306 (395)
T PF10267_consen 305 EV 306 (395)
T ss_pred HH
Confidence 43
No 309
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.79 E-value=8.8e+02 Score=29.71 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=31.7
Q ss_pred CChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhcCC
Q 004803 664 MDSKTRAELEEIALAEAD--------------VARLKQKVAELHHQLNQQRQHHYGS 706 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~--------------v~~le~~~~~l~~~l~~~~~~~~~s 706 (729)
+.+..++|..+++.++.+ |..|+.++.+|+.++.+|...-..+
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~ 342 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKS 342 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888864 5677888888888888777654443
No 310
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.77 E-value=6.3e+02 Score=27.77 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 616 KQALHERRLALEQDVSRLQEQ 636 (729)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~ 636 (729)
...++++..+|+.+|..|++.
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777777776643
No 311
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=35.76 E-value=4.4e+02 Score=31.64 Aligned_cols=23 Identities=13% Similarity=0.458 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~ 689 (729)
.++..+.+|..+..++-.++..+
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 312
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.65 E-value=4.6e+02 Score=27.56 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ-LN 697 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~-l~ 697 (729)
+.+|.+|-..+-++|+.=-.=...||+.+..+ =..-......|..+.+++..|+.+|+.++.. |+
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa----------~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQA----------ESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44466665555555533211122355554311 1133457788889999999999999999988 55
No 313
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=35.59 E-value=4.4e+02 Score=31.98 Aligned_cols=112 Identities=25% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCcccccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH--HHHHHHHHHHHHHH
Q 004803 554 AKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ--ALHERRLALEQDVS 631 (729)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~~r~~Le~~V~ 631 (729)
+++++.|-| ++--+-+||--..+-|+.-.-.| +| .-|--|-.|=+ ...-.-.-|++|-.
T Consensus 654 ~~~~tawer----------------eE~~l~~rL~dSQtllr~~v~~e-qg--ekqElL~~~~~l~s~~~q~sllraE~~ 714 (961)
T KOG4673|consen 654 SKAATAWER----------------EERSLNERLSDSQTLLRINVLEE-QG--EKQELLSLNFSLPSSPIQLSLLRAEQG 714 (961)
T ss_pred hhhhhHHHH----------------HHHHHHHhhhhHHHHHHHHHHHH-hh--hHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 466777866 34456678877776666555444 11 11111111100 00111234788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 632 RLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 632 ~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
+|+++|.+|++--+-++.-+ ..+=+||..++..++.||+.+..++..+.|+.+
T Consensus 715 ~l~~~le~e~nr~~~~~~e~-----------------~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq 767 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEY-----------------LAAQEEADTLEGRANQLEVEIRELKRKHKQELQ 767 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988666555422 244567788888888888888887777776654
No 314
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.59 E-value=1.6e+02 Score=30.92 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CC
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS--SS 661 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~--~~ 661 (729)
|.++...+.+|..+|..--+.-+.|+. ..+.+..+-..+++++++|++|+..-...+.-|.--|......|. +-
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEV----YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444333333333333 233444555567788888888888777777766665544433332 12
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 004803 662 RGMDSKTRAELEEIALAEAD 681 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~ 681 (729)
..+|-...+=.+-|+-|.+.
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~ 139 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAM 139 (251)
T ss_pred cCCCCChHHHHHHHHHHHHh
Confidence 33344444444444444443
No 315
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=35.26 E-value=4.3e+02 Score=28.41 Aligned_cols=97 Identities=25% Similarity=0.208 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHH---------------------------------------------HHHHHHHHH
Q 004803 594 LRHRIAKEARGNAILQASLERRKQAL---------------------------------------------HERRLALEQ 628 (729)
Q Consensus 594 ~~~~~~~~~~~n~~~~~~~~~~~~~~---------------------------------------------~~~r~~Le~ 628 (729)
.|..|..|++.|+.|.+.++..=++. ++-|..|++
T Consensus 108 eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~ 187 (264)
T PF08687_consen 108 EQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLE 187 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHH
Confidence 35678899999999888875433311 345788888
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 629 DVSRLQEQLQA-----------ERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 629 ~V~~L~~~L~~-----------e~~~~~~Le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
--..|+.|+.. |+.++.+|.+.|+.. ++. .-.|+-.| -+||.|---||+-|--.|+|+..|+
T Consensus 188 k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~e--q~~dy~~fv~mK-a~Ll~eqreLddkiklgeEQL~~L~ 261 (264)
T PF08687_consen 188 KRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEE--QLADYRHFVKMK-AALLIEQRELDDKIKLGEEQLEALR 261 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 88889988865 455555555555310 010 00112222 2578888888888888888887765
No 316
>PRK14127 cell division protein GpsB; Provisional
Probab=35.25 E-value=63 Score=30.04 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
.++..|++.|++++.+|++++.+++.++..-+
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45556666788888888888888888777543
No 317
>PRK11239 hypothetical protein; Provisional
Probab=35.13 E-value=58 Score=33.65 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
-+|-++|+.||++|+.|+.++..|..||
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555443
No 318
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.81 E-value=2e+02 Score=28.91 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
.++.|..-+.+++..|++.+++|+++|..
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888877753
No 319
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.56 E-value=6.7e+02 Score=32.61 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=31.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhh-------hhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAIL-------QASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRA 645 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~-------~~~~~~~~~~~~~~---r~~Le~~V~~L~~~L~~e~~~~~ 645 (729)
.|++||.....++.++..-.+....+ +..++.++..+..+ ..+|++.+..+.+...+....+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665444443333 33344444444443 44445555555554444444444
No 320
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=34.29 E-value=3.6e+02 Score=32.36 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLK 686 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le 686 (729)
+-..|++||.-|-.-.+-||
T Consensus 175 qKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 175 QKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHhHHHHHHHHhHHHHHHHH
Confidence 44567777766655555555
No 321
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=34.02 E-value=4.7e+02 Score=25.74 Aligned_cols=96 Identities=25% Similarity=0.258 Sum_probs=64.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (729)
.|.++...+.+.+-+-.+-.=. ...+.+.....++..||.-..++..+|=..++.-.-...-|+.
T Consensus 7 ~IK~~R~drAe~a~~~q~~~l~--~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~------------- 71 (152)
T PF07321_consen 7 RIKHLREDRAERALRRQERRLQ--EARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK------------- 71 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH-------------
Confidence 3444444444444333322111 1233446667788999999999988888888887777776665
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
...+|+.|-+-+..||+.+.+...++.++++
T Consensus 72 --------~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~ 102 (152)
T PF07321_consen 72 --------WQQQVASLREREAELEQQLAEAEEQLEQERQ 102 (152)
T ss_pred --------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888888888888877765
No 322
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.95 E-value=5.5e+02 Score=26.55 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
|-.+-++++.-...+|.++..||++|..|+.+..++
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999998876543
No 323
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=33.91 E-value=5.2e+02 Score=26.20 Aligned_cols=67 Identities=27% Similarity=0.286 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 615 ~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
.+..+...-..|+.+...|+.++.+=+.-...++.... ...-.+......+|.+|++.-..|..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~----------------e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE----------------ELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777888888888888777776666666443 33445567778888888888887777
Q ss_pred HHH
Q 004803 695 QLN 697 (729)
Q Consensus 695 ~l~ 697 (729)
+|-
T Consensus 185 ~l~ 187 (189)
T PF10211_consen 185 QLE 187 (189)
T ss_pred HHh
Confidence 764
No 324
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.75 E-value=1.2e+02 Score=25.08 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (729)
.|.+|-..|+.|+.|++..+.+=...|.|=+.-
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999998888877776553
No 325
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.70 E-value=3.4e+02 Score=30.83 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
|-.++.-||+||++|+-.+.-||--|. -.+++-...++-++.|+-++.-+|+|
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~-----------------~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLD-----------------DDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 666788899999999999999987553 33445555555555555555555533
No 326
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=33.67 E-value=3.5e+02 Score=24.29 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=49.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~----------~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
.+|.++|.+..+++..+.+-++.=++++..+-|-.. +....+-+|..|+..|..++.+...+-.-|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 368899999999999998888888887766532211 23344667888999998888887777666554
No 327
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.63 E-value=7.8e+02 Score=30.49 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=10.8
Q ss_pred HHHHhhhhhhhhhhHHHHHH
Q 004803 598 IAKEARGNAILQASLERRKQ 617 (729)
Q Consensus 598 ~~~~~~~n~~~~~~~~~~~~ 617 (729)
--+|-|.---|+..|+|+|.
T Consensus 363 qEqErk~qlElekqLerQRe 382 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQRE 382 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666665543
No 328
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.51 E-value=7.1e+02 Score=32.87 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.|.+..++-.++..++.++..|+.++..+..++...+.
T Consensus 968 ~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~k 1005 (1311)
T TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666665554443
No 329
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=33.47 E-value=1e+02 Score=27.43 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=40.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL--------------HERRLALEQDVSRLQEQL 637 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--------------~~~r~~Le~~V~~L~~~L 637 (729)
...||..-..||.++.+|..-+++|...+.+....+ =.-=..||-||.+|++++
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKV 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999999999999999987765433 222344666766666665
No 330
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.40 E-value=4.6e+02 Score=31.83 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=51.4
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHH----Hhh-CCCCCCCC------CC--CCCChhHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQE------QLQAERDLRAALE----VGL-SMSSGQFS------SS--RGMDSKTRAELEEIALAEADVARLK 686 (729)
Q Consensus 626 Le~~V~~L~~------~L~~e~~~~~~Le----~~l-~~~~~~~~------~~--~~~~~~~~~ll~eia~~E~~v~~le 686 (729)
|..+|.+++. .+++|++||+-=. .|| ....+++- .. ..--.+-++.++==+.||.++++|+
T Consensus 673 L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk 752 (786)
T PF05483_consen 673 LLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLK 752 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666654 5788888875322 233 32333221 00 1123455677777889999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004803 687 QKVAELHHQLNQQRQHH 703 (729)
Q Consensus 687 ~~~~~l~~~l~~~~~~~ 703 (729)
-.+..|+.||-.+|.+-
T Consensus 753 ~el~slK~QLk~e~~eK 769 (786)
T PF05483_consen 753 NELSSLKKQLKTERTEK 769 (786)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 331
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.40 E-value=7e+02 Score=28.78 Aligned_cols=72 Identities=19% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhh-----hhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAI-----LQASLERRKQALHERRLA------------LEQDVSRLQEQLQAERDL 643 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~-----~~~~~~~~~~~~~~~r~~------------Le~~V~~L~~~L~~e~~~ 643 (729)
+..+..=|..=|+|-+|++++.=.-|. .+..+..-+.+|.++|.. +-+-|.+||.||-+.+.=
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666544332222 112222333344444422 446788999999888777
Q ss_pred HHHHHHhhC
Q 004803 644 RAALEVGLS 652 (729)
Q Consensus 644 ~~~Le~~l~ 652 (729)
..+|...+.
T Consensus 302 L~~L~~~~~ 310 (434)
T PRK15178 302 YAQLMVNGL 310 (434)
T ss_pred HHHHHhhcC
Confidence 776766543
No 332
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=33.21 E-value=7e+02 Score=27.51 Aligned_cols=111 Identities=26% Similarity=0.255 Sum_probs=72.3
Q ss_pred CcccCCCCchHHHHHHHhhhhh--HHHHHHHHHHhhhhhh--hhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 570 SVESIDSSGEEELAIQRLEITK--NDLRHRIAKEARGNAI--LQASLE-------RRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~--~~~~~~-------~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.-|.-|.|.---++|+-=|+++ .++|..++.+||-|=+ ||..-. .-++.|..||++ -.-+.++-+
T Consensus 96 gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRld----yD~kkkk~~ 171 (366)
T KOG1118|consen 96 GKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLD----YDYKKKKQG 171 (366)
T ss_pred HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhH----HHHHHHHhc
Confidence 4456677777788888888877 5889999999999965 776622 223344455544 445555666
Q ss_pred H--HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 639 A--ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 639 ~--e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+ |.+||.|||.-=+ ++-.+.-.=++++|.||...+|=+.-+..||.
T Consensus 172 K~~dEelrqA~eKfEE-------------SkE~aE~sM~nlle~d~eqvsqL~~Li~aqLd 219 (366)
T KOG1118|consen 172 KIKDEELRQALEKFEE-------------SKELAEDSMFNLLENDVEQVSQLSALIQAQLD 219 (366)
T ss_pred cCChHHHHHHHHHHHH-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 6 8999999987322 11122222367778887777776666666655
No 333
>PF13514 AAA_27: AAA domain
Probab=33.05 E-value=6e+02 Score=32.86 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=28.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 660 ~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+|.........+..+++.++..+..++.++..|..++.
T Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 236 FPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777788888888888888888887776654
No 334
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.95 E-value=1.4e+02 Score=30.34 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004803 621 ERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~ 638 (729)
++..+|++++++|+++|+
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666666655
No 335
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.87 E-value=1.7e+02 Score=29.97 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
.+..+.++|..+|+||.-|..-|..-.
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999886443
No 336
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.81 E-value=5.8e+02 Score=33.61 Aligned_cols=120 Identities=11% Similarity=0.178 Sum_probs=63.3
Q ss_pred CcccCCCCchHHHHHHHhhhhhHHHHHHHHH---Hhhhh------hhhhhhHHHHHH----------HHHHHHHHHHHHH
Q 004803 570 SVESIDSSGEEELAIQRLEITKNDLRHRIAK---EARGN------AILQASLERRKQ----------ALHERRLALEQDV 630 (729)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n------~~~~~~~~~~~~----------~~~~~r~~Le~~V 630 (729)
..++++....+...|.|+...-.+|+.+|.. ++.+. .-||..+..-+. .+.+.+..++.++
T Consensus 780 ~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI 859 (1311)
T TIGR00606 780 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666677777777777777642 22211 223433322222 2244566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 631 SRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 631 ~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
.+||.++.+-.+.+..|..++... ..|=+...+|-++++.+.++|..+++++..|+..+
T Consensus 860 ~~Lq~ki~el~~~klkl~~~l~~r-------~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRR-------QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 777777666666666666655421 12333445555555555555555555555554433
No 337
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=32.77 E-value=2.9e+02 Score=27.17 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=48.6
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (729)
.++|+...-||.-..++..++.-=|+-=-.++|-+ ....+++.+++.+++.-+.+|+.-|......
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899988888888744333333344443 5666788999999999999999998876554
No 338
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.67 E-value=2.9e+02 Score=31.59 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
+.+|++++..+-+++..||+++..+..++.+....
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888889889899999999998888888876543
No 339
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=32.55 E-value=1.1e+02 Score=27.34 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (729)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (729)
+.-++|-..++..-.+|.+||.+|+.+|..|+.=
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677778888889999999999999988753
No 340
>PF14282 FlxA: FlxA-like protein
Probab=32.44 E-value=2.9e+02 Score=25.34 Aligned_cols=60 Identities=28% Similarity=0.499 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004803 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (729)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~ 703 (729)
..|++.+..|+++|++-.+ ...+|++++. .-+.+|.+.|.-|+.++..|+.+..++....
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQ------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHc------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777777777764221 1345666554 4566677777777777777777776665443
No 341
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.02 E-value=9.4e+02 Score=28.63 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=17.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 619 (729)
..+++.+--+.+|+.....=-+.++.|+..+++-+..|
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566665444333333344444444333333
No 342
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.95 E-value=6.1e+02 Score=32.27 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
++..|-.||..+++.|...|..+..+..+|.
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 3344555555555555555555555544444
No 343
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=31.92 E-value=6.2e+02 Score=26.50 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Q 004803 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (729)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~ 664 (729)
+..|..=..++..|. |-...||+-..+|-...+.-+..+++.+..++..++.+..-+.
T Consensus 30 ~~ee~r~~~i~e~i~---~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~------------------- 87 (247)
T PF06705_consen 30 EQEEQRFQDIKEQIQ---KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQ------------------- 87 (247)
T ss_pred HhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004803 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~ 707 (729)
..+=.-+..|...+..|+..|...+.++.+.-.....++
T Consensus 88 ----~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l 126 (247)
T PF06705_consen 88 ----EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQEL 126 (247)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 344
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.84 E-value=1.6e+02 Score=28.71 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=36.2
Q ss_pred hhhhHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004803 588 EITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALEV 649 (729)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~-~~~Le~ 649 (729)
-..-.+|+.+| +|..-=||.+++. .+=.++-.+|-+|+..|+.+|.+++.. +..++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~-----~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTAN-----PPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444565555 6666666666554 223445568999999999999988753 333443
No 345
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=31.80 E-value=1.1e+02 Score=31.86 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhCCCCCCC
Q 004803 625 ALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQF 658 (729)
Q Consensus 625 ~Le~~V~~L~~~L~--~e~~~~~~Le~~l~~~~~~~ 658 (729)
.|-|.|.+||.||. +||++|++.-+-.......+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 48899999999996 79999999988776655433
No 346
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=31.79 E-value=4.4e+02 Score=29.74 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC------------C-C-CCCChhHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------------S-S-RGMDSKTRAELEEIAL 677 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~------------~-~-~~~~~~~~~ll~eia~ 677 (729)
|..|=...+-.|..|+....++......=...+..||.||..-.+++. . + -.-+.--.+|+.|+.+
T Consensus 48 L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~l 127 (384)
T PF03148_consen 48 LRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVEL 127 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHH
Confidence 344555556667777777776666665556667778887755444443 1 1 3456677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 678 AEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 678 ~E~~v~~le~~~~~l~~~l~~ 698 (729)
++.--..|++.+.....||..
T Consensus 128 i~~~~~lL~~~l~~~~eQl~~ 148 (384)
T PF03148_consen 128 IENIKRLLQRTLEQAEEQLRL 148 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888777776654
No 347
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=2.6e+02 Score=31.77 Aligned_cols=86 Identities=26% Similarity=0.329 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQA---ERDLRAALEVGLSMSSGQFSSSRGMDSKTRA----ELEEIALAEADVAR 684 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~---e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~----ll~eia~~E~~v~~ 684 (729)
++.-+.++.+++-.+|.||+.|.+.|.. +.+|-.-.+.|-. .-.|.++ .+.||+.|-...++
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~E-----------d~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKE-----------DEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----------hHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3445566777788888888888776654 3333333333222 1122222 34677777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccccc
Q 004803 685 LKQKVAELHHQLNQQRQHHYGSLSDACD 712 (729)
Q Consensus 685 le~~~~~l~~~l~~~~~~~~~s~~~~~~ 712 (729)
-|+++.+|...+++- .-|+|..+.
T Consensus 174 aE~~i~El~k~~~h~----a~slh~~t~ 197 (542)
T KOG0993|consen 174 AEQRIDELSKAKHHK----AESLHVFTD 197 (542)
T ss_pred HHHHHHHHHhhhccc----chHHHHHHH
Confidence 788888887544432 235555443
No 348
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=31.66 E-value=6.1e+02 Score=26.39 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVG-LSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~-l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.|..|+++|+.+|++|.+--.|=-+- |+--.|... .+.+=+.+.+|. . +-++.||.+|..++.+.+.|-.|-..
T Consensus 127 klkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~-s--~kId~Ev~~lk~qi~s~K~qt~qw~~ 202 (220)
T KOG3156|consen 127 KLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEI-S--TKIDQEVTNLKTQIESVKTQTIQWLI 202 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhhhcchhHhHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999998744331110 122223221 122222222321 1 67788899999999998888877543
No 349
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.41 E-value=3.7e+02 Score=24.30 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGL-----SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l-----~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
...|-+....|..++.+=..+...|+..= -+.-|..-+....+.-...|=..+..++.+|.+|+.++..+..++.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444444321 1112222223333333344444567777777777777777777766
Q ss_pred HHH
Q 004803 698 QQR 700 (729)
Q Consensus 698 ~~~ 700 (729)
.-+
T Consensus 95 elk 97 (105)
T cd00632 95 ELQ 97 (105)
T ss_pred HHH
Confidence 544
No 350
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.92 E-value=3.9e+02 Score=33.63 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcCCccccccc
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ--------HHYGSLSDACDR 713 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~--------~~~~s~~~~~~~ 713 (729)
+.....++..+++-++.++..++..+..+..++.+.+. ...|-.|-.|.+
T Consensus 408 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg~ 465 (908)
T COG0419 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQ 465 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 34444555556667777777777777777777777543 124678999983
No 351
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=30.79 E-value=4.4e+02 Score=24.49 Aligned_cols=92 Identities=25% Similarity=0.277 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCCCC--CCCChhHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALE---QDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSS--RGMDSKTRAELEEIALAEA 680 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le---~~V~~L~~~L~~e~~~~~~Le~~l~~--~~~~~~~~--~~~~~~~~~ll~eia~~E~ 680 (729)
||.-++-|+......+.+|- +.+...+.+|+.-...+.-+...+.. ..| ++++ .....-...|-..|...+.
T Consensus 4 L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~f~~~l~~~i~~q~~ 82 (141)
T TIGR02473 4 LQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAG-TSALELSNYQRFIRQLDQRIQQQQQ 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332 33344445555544444444443321 112 2222 2234445666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004803 681 DVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 681 ~v~~le~~~~~l~~~l~~~~ 700 (729)
.|..++..|...+..|-+.+
T Consensus 83 ~l~~~~~~~e~~r~~l~~a~ 102 (141)
T TIGR02473 83 ELALLQQEVEAKRERLLEAR 102 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665443
No 352
>PRK11020 hypothetical protein; Provisional
Probab=30.73 E-value=1.9e+02 Score=27.07 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.|.+|+.+|-.+|.. +|+=|..|..+. =+..+.++..||+.|+.+|.+|+.+-. +.|+.|++
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~~~---~~lske~~ 63 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRG---------DAEKYAQFEKEKATLEAEIARLKEVQS---QKLSKEAQ 63 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 367888999999875 455555554422 234556666666666666666654432 34555554
No 353
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=30.66 E-value=7.3e+02 Score=30.92 Aligned_cols=62 Identities=29% Similarity=0.265 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
+.+|+.+-+.||++|+....-=--+|+|+. |+||.++|+++..+-.+--+|+..--++|..
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R-------------------~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~ 732 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKR-------------------LEEIPLIEKAYDERQEEDRELYEAREKQRIE 732 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444566666666666655554455555554 6677777777776666666666655555554
Q ss_pred h
Q 004803 703 H 703 (729)
Q Consensus 703 ~ 703 (729)
.
T Consensus 733 ~ 733 (988)
T KOG2072|consen 733 A 733 (988)
T ss_pred H
Confidence 3
No 354
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.66 E-value=4.1e+02 Score=25.15 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=42.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
.|+.|..--.+++..|+.=-..-...++.|+.-+....++|..|+.++..++.++.+=..=..+|-.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666544344444566666667777888888999999888888765555555543
No 355
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=30.12 E-value=20 Score=34.80 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=22.0
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCC
Q 004803 34 WKSWKKRWFILTRTSLVFFKNDPSAL 59 (729)
Q Consensus 34 ~k~WkkRWfVL~g~~L~yYKd~~~~~ 59 (729)
++.|.|+|+++.+..|.+||--+-+.
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVPVt~ 53 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVPVTD 53 (165)
T ss_pred HHHHhhheEeecccceEEEEeeeccc
Confidence 56799999999999999999865444
No 356
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=29.96 E-value=5.4e+02 Score=25.25 Aligned_cols=85 Identities=26% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCC-CC---CCCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 629 DVSRLQEQLQAERDLRAALEVGLSMSSG-QF---SSSRGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 629 ~V~~L~~~L~~e~~~~~~Le~~l~~~~~-~~---~~~~~~~~~~~~ll~eia--~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
||+-|-+||+.|.. |.|.||..-.. .+ +-...|-.+--+.=++|+ .-|.-+.-=|.++.+|+..|.+|+..
T Consensus 39 eieiL~kQl~rek~---afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~eLk~~l~sQK~~ 115 (153)
T PF15175_consen 39 EIEILSKQLEREKL---AFEKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQEDILNGKENEIKELKQRLASQKQN 115 (153)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchHHHHhhhHHHHHH
Confidence 68888999998875 34444431100 00 000112222222223444 44444445577899999999999999
Q ss_pred -hcCCcccccccccc
Q 004803 703 -HYGSLSDACDRYQN 716 (729)
Q Consensus 703 -~~~s~~~~~~~~~~ 716 (729)
+...+.|...+.++
T Consensus 116 ~Hk~qlsdl~Iqk~Q 130 (153)
T PF15175_consen 116 FHKRQLSDLRIQKQQ 130 (153)
T ss_pred HhhccchhhHHhhHH
Confidence 89999988876554
No 357
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=29.82 E-value=97 Score=35.28 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 629 DVSRLQEQLQAERDLRAALEVGLSMSSGQ---FSSS--RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 629 ~V~~L~~~L~~e~~~~~~Le~~l~~~~~~---~~~~--~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
|..-|-.+|-.|..|..+||.||-+..-- ...| ...+.-..++=..|+.|.-||.+|+-++ +||.
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~-~lRk 377 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTEL-ELRK 377 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66678899999999999999998544322 2344 3345555666667777777777777665 3444
No 358
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.79 E-value=3.8e+02 Score=23.65 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-CCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS-RGMD----SKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~-~~~~----~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
.++.....+.+....|..++++=......|+..=.-...-..+. .++. .-...|=+.++.++.+|..|+.+...+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777643333344443211100011122 3333 333444455677888888888888888
Q ss_pred HHHHHHHHhhh
Q 004803 693 HHQLNQQRQHH 703 (729)
Q Consensus 693 ~~~l~~~~~~~ 703 (729)
..++.......
T Consensus 89 ~~~l~~~~~~l 99 (106)
T PF01920_consen 89 EKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777655543
No 359
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.61 E-value=3.6e+02 Score=25.13 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
+|+.=-.|.++|.+|++-+. +...++=. +-+.+-..+-||...|+-||..+..|+..|.+++-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r------~SEdrsa~-------SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR------RSEDRSAA-------SRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 45555678888888877665 22222111 01334557789999999999999999999988753
No 360
>PRK11239 hypothetical protein; Provisional
Probab=29.40 E-value=73 Score=32.94 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
..++.||++|..||++|..|+.+|.+-+.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999887665
No 361
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.82 E-value=3e+02 Score=35.54 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 004803 665 DSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~ 687 (729)
+.....|-+|.+.+++.+..||+
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~ 194 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELEL 194 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677766666554443
No 362
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=4.3e+02 Score=25.22 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--CC-CCCCCCCC-----C-------CCChhHHHHHHHHHHHHH
Q 004803 617 QALHERRLALEQDVSRLQEQLQAERDLRAALE-VGL--SM-SSGQFSSS-----R-------GMDSKTRAELEEIALAEA 680 (729)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le-~~l--~~-~~~~~~~~-----~-------~~~~~~~~ll~eia~~E~ 680 (729)
..++.|..+|++||+..+.+++. |..|.. .-| .- ..-++.+. . .|-.....+..+|+.||.
T Consensus 26 srl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999874 333332 222 11 11122211 1 122233445667888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004803 681 DVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 681 ~v~~le~~~~~l~~~l~~~ 699 (729)
++-..+..+.+|+..||+-
T Consensus 103 ~~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 103 ELESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888863
No 363
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.64 E-value=89 Score=31.19 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
..|.|-..|.++|-||+.++.||++.|.
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl~ 48 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQELI 48 (166)
T ss_dssp HHHHHHHHHHHCH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888899999999999999999883
No 364
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.60 E-value=6.9e+02 Score=31.04 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=28.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE 640 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e 640 (729)
+-|..|++||..+.+++.+..+= +.+...+++.++.+.+.+.+|+++-.++.+++++|
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~e 569 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHL----EKLLKEQEKLKKELEQEMEELKERERNKKLELEKE 569 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766654311 12223334444444444444444444444444433
No 365
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.57 E-value=6.6e+02 Score=25.76 Aligned_cols=76 Identities=25% Similarity=0.233 Sum_probs=46.8
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~----------~~~r~~Le~~V~~L~~~L~~e~~~~~~L 647 (729)
.+.|.---+||+-|.-+...|+.--.-=+-||+-|..++... +.-=.+|+.+-..+|.||.+=..==..|
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778999999999999765555556888776555422 2222345555556666665433333456
Q ss_pred HHhhCC
Q 004803 648 EVGLSM 653 (729)
Q Consensus 648 e~~l~~ 653 (729)
+...+.
T Consensus 181 q~q~~~ 186 (192)
T PF11180_consen 181 QRQANE 186 (192)
T ss_pred HHHhcC
Confidence 655553
No 366
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=28.51 E-value=2.7e+02 Score=27.03 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHHH
Q 004803 662 RGMDSKTRAELEEIAL-AEADVARLKQ 687 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~-~E~~v~~le~ 687 (729)
..-++...++|.||.+ +|.|++||++
T Consensus 111 ~s~DP~L~~vL~EIElRa~VELAKl~~ 137 (138)
T PRK12787 111 ASGDPGLDAVLDEIELRVEVELAKLGQ 137 (138)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcc
Confidence 4568888999999986 7888999875
No 367
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.42 E-value=61 Score=32.35 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHH
Q 004803 592 NDLRHRIAKEARGNAILQASLER 614 (729)
Q Consensus 592 ~~~~~~~~~~~~~n~~~~~~~~~ 614 (729)
.|+..|....+--||.|..-|..
T Consensus 3 eD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 36778888888899999998844
No 368
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=27.82 E-value=1.4e+02 Score=31.56 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
++.++=+-..|--.|-.||-||+..-..|+-|..+++ -+.-+-..|-.|.-||...--.+.-+|+=|+.|| .--.+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~d---Ea~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~-AslV~ 86 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRD---EATRLQDELQGKLEELQKKQHEANLAVTPLKAKL-ASLVQ 86 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHH-HHHHH
Q ss_pred HHHHHh
Q 004803 696 LNQQRQ 701 (729)
Q Consensus 696 l~~~~~ 701 (729)
-+++||
T Consensus 87 kc~eRn 92 (277)
T PF15030_consen 87 KCRERN 92 (277)
T ss_pred HHHHHH
No 369
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.78 E-value=3.2e+02 Score=31.74 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
...|.+|+++..+|+.++++=+.+-.-|.
T Consensus 108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 108 QSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444433343
No 370
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.50 E-value=6.4e+02 Score=32.28 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
..+..+.||+..|+.+..|..++..++....
T Consensus 742 ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~ 772 (1074)
T KOG0250|consen 742 EIKKKEKEIEEKEAPLEKLKEELEHIELEAQ 772 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554443
No 371
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=27.47 E-value=9.8e+02 Score=27.40 Aligned_cols=108 Identities=25% Similarity=0.316 Sum_probs=68.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCCCC
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL-QAERDLRAALEVGLSMSSGQFSS 660 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L-~~e~~~~~~Le~~l~~~~~~~~~ 660 (729)
+.-+=|+.+.++|+.+-. ..|. .+.+|=....+-|..|+-.+.+--+.. +.|-++ ++||.|+....|+|.+
T Consensus 253 ~l~~~l~~tan~lr~Q~~---~ve~----af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I-~~le~airdK~~pLKV 324 (421)
T KOG2685|consen 253 ALDQTLRETANDLRTQAD---AVEL----AFKKRIRETQDARNKLEWQLAKTLEEIADAENNI-EALERAIRDKEGPLKV 324 (421)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhcccccHHH
Confidence 344456666677766543 2333 345566677777777776665543333 334444 4678888766676631
Q ss_pred -----------C---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 661 -----------S---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 661 -----------~---~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
| -+-+.--..|+.||-.|...|..|++++.+-+.-|.
T Consensus 325 AqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~ 375 (421)
T KOG2685|consen 325 AQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLK 375 (421)
T ss_pred HHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234555578999999999999999999887665443
No 372
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.29 E-value=1.5e+02 Score=35.73 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=26.7
Q ss_pred HHHhhhhhhhhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 599 AKEARGNAILQASLERR-----KQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 599 ~~~~~~n~~~~~~~~~~-----~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
-+-+|||-.+-...... +...-.+|.+|+++|++|+..+++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578887754443322 233344788999999999877654
No 373
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.21 E-value=2.5e+02 Score=30.28 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 004803 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIA-------LAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia-------~~E~~v~~le~~~~~l~~~l 696 (729)
++|-+-=+.|-..|.+|..+|.+...|+.++.-.-.+-..|=.-++++..+|+ -++.+.++|+.|+.--+..|
T Consensus 127 seit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888999999999999888887553322222333344444455544 44445555555555555444
Q ss_pred H
Q 004803 697 N 697 (729)
Q Consensus 697 ~ 697 (729)
-
T Consensus 207 E 207 (267)
T PF10234_consen 207 E 207 (267)
T ss_pred H
Confidence 3
No 374
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=27.17 E-value=2.9e+02 Score=33.51 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhcCCccccccccccc
Q 004803 679 EADVARLKQKVAELHHQLNQ-QRQHHYGSLSDACDRYQNV 717 (729)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~-~~~~~~~s~~~~~~~~~~~ 717 (729)
+.....|++.+..+...+++ ..-.|+||.+++..+.|+.
T Consensus 606 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (657)
T PTZ00186 606 AAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQ 645 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHH
Confidence 33344455555555555544 4566788888777765543
No 375
>PRK12704 phosphodiesterase; Provisional
Probab=27.06 E-value=6e+02 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 617 QALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L 637 (729)
+...++|.++++++...+.+|
T Consensus 64 eE~~~~R~Ele~e~~~~e~~L 84 (520)
T PRK12704 64 EEIHKLRNEFEKELRERRNEL 84 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776665555444
No 376
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.03 E-value=6.2e+02 Score=31.06 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004803 611 SLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~ 689 (729)
+++.|......-..-|++.+.+|+++|.. |..|..--.. .+.+ .+...++.+|.+|+-++..+..|+.+.
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~~~----d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RDSV----DLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566677777777777754 3333222221 1222 134667778888777777776666655
Q ss_pred HHHH
Q 004803 690 AELH 693 (729)
Q Consensus 690 ~~l~ 693 (729)
.+|.
T Consensus 328 ~~l~ 331 (726)
T PRK09841 328 AEIS 331 (726)
T ss_pred HHHH
Confidence 5543
No 377
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.03 E-value=9.9e+02 Score=27.53 Aligned_cols=108 Identities=28% Similarity=0.321 Sum_probs=65.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhh---hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAIL---QASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVG--- 650 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~--- 650 (729)
|=...||.|..--|||.|+.|+--+|..+ --.|+++-. .|++-|.-+|.+-.+ + +=..||.+|++|
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--k---elE~lR~~L~kAEke 324 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--K---ELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--H---HHHHHHHHHHHHHHH
Confidence 33457889999999999997665554332 222333322 345555566655554 2 334688888887
Q ss_pred hCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 651 LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 651 l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
|... ++-+-|...|..|.= .-|.||.+++.|-.+-..||-..
T Consensus 325 le~n-----S~wsaP~aLQ~wLq~--T~E~E~q~~~kkrqnaekql~~A 366 (575)
T KOG4403|consen 325 LEAN-----SSWSAPLALQKWLQL--THEVEVQYYNKKRQNAEKQLKEA 366 (575)
T ss_pred HHhc-----cCCCCcHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHH
Confidence 3322 245667788888863 45667777777766666665543
No 378
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=9.1e+02 Score=29.96 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~ 639 (729)
..+...|+++.+-|+.+||+
T Consensus 436 nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666553
No 379
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=25.81 E-value=4.9e+02 Score=23.77 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhh-------hHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQA-------SLERRKQAL-HER-RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~-------~~~~~~~~~-~~~-r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
+|.++-..-.+++.+|...-+.|-.+.. .+..-++.. ..+ ...+.+.+.+++..|+.++..-.++.+.+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777655554433211 111111111 112 357889999999999999999999998775
No 380
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.79 E-value=90 Score=33.15 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHH
Q 004803 617 QALHERRLALEQDVSRLQE---QLQAER 641 (729)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~---~L~~e~ 641 (729)
+.|.+||.+|+.+|++|.. ++++|.
T Consensus 7 ~eL~qrk~~Lq~eIe~LerR~~ri~~Em 34 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLERRRERIEKEM 34 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888853 444443
No 381
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=25.78 E-value=2.1e+02 Score=25.79 Aligned_cols=29 Identities=45% Similarity=0.640 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhC
Q 004803 624 LALEQDVSRLQEQLQ------AERDLRAALEVGLS 652 (729)
Q Consensus 624 ~~Le~~V~~L~~~L~------~e~~~~~~Le~~l~ 652 (729)
+.+..++++||+||+ .||=-|.||..+|.
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLg 40 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGLG 40 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 345667778887775 47778888888874
No 382
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=25.74 E-value=1.4e+02 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=22.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE 621 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 621 (729)
--+||..|.+++.+|.+|- |.-|+.|+..+.+
T Consensus 17 k~kLd~Kk~Eil~~ln~EY------~kiLk~r~~~lEe 48 (56)
T PF08112_consen 17 KSKLDEKKSEILSNLNMEY------EKILKQRRKELEE 48 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3578999999999998874 4445555555543
No 383
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.67 E-value=7.2e+02 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (729)
.+.-.||+-++.++..+++.+.+...+-
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344888889999988988888877654
No 384
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=25.64 E-value=1.4e+02 Score=31.02 Aligned_cols=60 Identities=30% Similarity=0.438 Sum_probs=42.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 004803 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---------~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
|.|-.+--||..|+.|++.|.+- ..-+.|+-+||+-+. ..+|-=..+.+||..|+.||.-
T Consensus 124 e~EklkndlEk~ks~lr~ei~~~-~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~s 192 (220)
T KOG3156|consen 124 ENEKLKNDLEKLKSSLRHEISKT-TAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIES 192 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-chhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHHH
Confidence 56777788889999999998752 333458888876554 2234445688888888888753
No 385
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.64 E-value=1.5e+02 Score=25.95 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=28.0
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh----hhhhhHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~n~----~~~~~~~~~~~~~~~~ 622 (729)
-|+|||.-|.++...| -.|+||+. ++-.-+.-||+..++|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899885 3444455555554443
No 386
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=25.44 E-value=6.6e+02 Score=31.44 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=25.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRK 616 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 616 (729)
-|-||..| ++++.|....|.+|.+.--|+.|+
T Consensus 184 Nq~l~klk-q~~~ei~e~eke~a~yh~lLe~r~ 215 (984)
T COG4717 184 NQLLEKLK-QERNEIDEAEKEYATYHKLLESRR 215 (984)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666 999999999999999988876554
No 387
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.30 E-value=7.4e+02 Score=25.27 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=48.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--r~-~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
+|+..+..+.+|+...+.=-+--|-|+-+.++||..+++. |. +|+++..-|+++ +..+|.-|..
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~---~e~lr~el~k 141 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI---LESLRWELAK 141 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6778888888888888766666778888999999877543 55 888888888884 3455655554
No 388
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=1.4e+03 Score=28.49 Aligned_cols=134 Identities=10% Similarity=0.180 Sum_probs=79.5
Q ss_pred cccccchHHHhhhCCCCcHHHHHHHHHHHhc--C---CCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhH
Q 004803 164 LVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (729)
Q Consensus 164 ~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~--G---l~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (729)
..|-.+|-.++.....+-.++..+|.++... + .+.+-.|-.+-+...++.++-.+-.. +....+++.|--=|
T Consensus 321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHH
Confidence 3445556556655667777888888777642 2 44556667888888888887665432 11112333333333
Q ss_pred HHHhhhCCCC-----------------CCChhhHHHHHHHHhcCCH---HHHHHHHHHHHhccCChhHHHHHHHHHHHHh
Q 004803 239 KHVLRELPSS-----------------PVPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMMH 298 (729)
Q Consensus 239 K~fLReLPeP-----------------Llp~~l~~~~l~~~~~~~~---~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~ 298 (729)
+.|.+.-+.. =++..+..-++......+. .+.+..|+.+| +.=|..|..+|.+|.++|.
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLLD 476 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHhh
Confidence 3333333321 1333455555555554442 34567778744 7889999999999999886
Q ss_pred hcc
Q 004803 299 TIS 301 (729)
Q Consensus 299 ~V~ 301 (729)
.+.
T Consensus 477 ti~ 479 (968)
T KOG1060|consen 477 TIL 479 (968)
T ss_pred hhh
Confidence 553
No 389
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=24.74 E-value=4.9e+02 Score=24.32 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=30.7
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
..+.|.+.+. ....-|.+++..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4466777653 5789999999999999999999988643
No 390
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=24.47 E-value=7.9e+02 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 671 ELEEIALAEADVARLKQKVAE 691 (729)
Q Consensus 671 ll~eia~~E~~v~~le~~~~~ 691 (729)
-|+.+..|+.++.-+++++..
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEE 234 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
No 391
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.25 E-value=4.6e+02 Score=25.17 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=13.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 604 GNAILQASLERRKQALHERRLALEQDVSRLQ 634 (729)
Q Consensus 604 ~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~ 634 (729)
|+..+.+-+++-.......|..++.-|..+.
T Consensus 37 G~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~ 67 (132)
T PF05597_consen 37 GSKVFEALVKEGEKLEKKTRKKAEEQVEEAR 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444433333334443333333
No 392
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.82 E-value=2.6e+02 Score=24.29 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=20.0
Q ss_pred HHHHhhhhhHHHHHHHH---HHhhhhh
Q 004803 583 AIQRLEITKNDLRHRIA---KEARGNA 606 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~n~ 606 (729)
-|+|||.-|..+...|. .|||+|-
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~G 38 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNG 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 48899999999998884 5888875
No 393
>PRK11281 hypothetical protein; Provisional
Probab=23.80 E-value=8.9e+02 Score=31.48 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=21.7
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLER 614 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 614 (729)
.++-+.|+-||.+..-|+ +|.+.-+.++.||..+..
T Consensus 56 ~~~k~~~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~ 91 (1113)
T PRK11281 56 AEDKLVQQDLEQTLALLD-KIDRQKEETEQLKQQLAQ 91 (1113)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345566788877766554 455555566666665543
No 394
>PRK12705 hypothetical protein; Provisional
Probab=23.66 E-value=7e+02 Score=29.40 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
..+.+|.++|+|+...+..++.
T Consensus 60 ~~~~~~~~~e~e~~~~~~~~~~ 81 (508)
T PRK12705 60 LLLRERNQQRQEARREREELQR 81 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666555555533
No 395
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.59 E-value=1.2e+03 Score=27.21 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 593 DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQ 634 (729)
Q Consensus 593 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~ 634 (729)
.++.++..-.-.++.|++.++..+++..+++..|++-=.+|.
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~ 112 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLS 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444455555555555555555544444433333
No 396
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.36 E-value=1.2e+02 Score=25.03 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 668 TRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
+-+|=+=||+||+||.++|..+..=.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455559999999999999876543
No 397
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=23.20 E-value=1.7e+02 Score=33.36 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 628 QDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 628 ~~V~~L~~~L~~e~~~~~~Le 648 (729)
.|+++|.+.|.+|+.||.-||
T Consensus 594 kel~kl~~dleeek~mr~~le 614 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLE 614 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 456677777777777777555
No 398
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.06 E-value=1.9e+02 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 673 EEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~ 695 (729)
+.|..+|+|+..|+.++..+..+
T Consensus 104 ~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 104 RRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 44556777777777777444433
No 399
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.84 E-value=1.8e+02 Score=24.17 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
.+.+|-..|+-|++||+.+|-+-.+-|.|-|.-+.
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLFr 63 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEALFR 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 45666667888888899888888888887776543
No 400
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=22.84 E-value=1.2e+02 Score=35.61 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=65.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~ 660 (729)
|.+--+-|+-+.+||.||| -||.- ++-+...+..|..-.+-|..-|.+|+.-+..|.-+-..+.+-..+
T Consensus 33 E~dr~~WElERaElqariA-------fLqgE----rk~qenlk~dl~rR~kmlE~~lkeerak~~~lq~gte~~~~d~~~ 101 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIA-------FLQGE----RKGQENLKMDLVRRIKMLEFALKEERAKYNKLQPGTELPQLDEKP 101 (577)
T ss_pred hhhhhheehhhhhHHHHHH-------HHhcc----hhhhHHHHHHHHHHHhcccchhHHhhhhhhccccccccccccccc
Confidence 6667778999999999997 34422 222333445555555666677778888888887744445555555
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 661 SRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 661 ~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
+...-+.+...++.+..+|+...-..+--.-|
T Consensus 102 ~~~~s~~t~~~~~~~~~~~~~~~~w~~~r~~l 133 (577)
T KOG0642|consen 102 VADNSEVTGNTLAAANTLENAILLWKQGRLLL 133 (577)
T ss_pred chhcCccccccccccccccchHHHHHHHHHHH
Confidence 56666677778888888876655544433333
No 401
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.74 E-value=3.5e+02 Score=27.75 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 617 QALHERRLALEQDVSRLQEQLQAERD 642 (729)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (729)
+-..+-|.+++++..+...+|+.|..
T Consensus 144 ~ii~~A~~~Ie~Ek~~a~~~Lk~ei~ 169 (205)
T PRK06231 144 LIIFQARQEIEKERRELKEQLQKESV 169 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777777777777654
No 402
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.73 E-value=5.9e+02 Score=27.47 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=12.0
Q ss_pred cchhhhHHHHhhhCCCCCCC
Q 004803 232 HVIGDCVKHVLRELPSSPVP 251 (729)
Q Consensus 232 h~vA~lLK~fLReLPePLlp 251 (729)
..++++++.|+..+-.+=||
T Consensus 8 ~~L~~L~~~Yv~aIn~G~vP 27 (297)
T PF02841_consen 8 PMLAELVKSYVDAINSGSVP 27 (297)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 44667777777766666555
No 403
>PF13166 AAA_13: AAA domain
Probab=22.66 E-value=1.4e+03 Score=27.55 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
..+++..+..|...|.. ++.+|+.-+..+...+... .+......+...|..+++.|....+++..+..
T Consensus 324 ~~~~~~~~~~l~~~l~~---l~~~L~~K~~~~~~~~~~~-~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~ 391 (712)
T PF13166_consen 324 KEELKSAIEALKEELEE---LKKALEKKIKNPSSPIELE-EINEDIDELNSIIDELNELIEEHNEKIDNLKK 391 (712)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555532 5666666554444434332 22333344545555555555444444444433
No 404
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.23 E-value=5.3e+02 Score=31.34 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------H-HHHHHH
Q 004803 593 DLRHRIAKEARGNAILQASLERRKQAL-----------HERRLALEQDVSRLQEQLQA--------------E-RDLRAA 646 (729)
Q Consensus 593 ~~~~~~~~~~~~n~~~~~~~~~~~~~~-----------~~~r~~Le~~V~~L~~~L~~--------------e-~~~~~~ 646 (729)
.+|.+|+.----|+.+||++..-+..+ +++...|=|.|..|+..|+. | .+|.+-
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR 620 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666544445778888875544433 44455566777777666643 2 133344
Q ss_pred HHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 004803 647 LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (729)
Q Consensus 647 Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~ 683 (729)
|+.|=.|.- .+...+|.-|+-||--|..|-++..
T Consensus 621 lqaaE~R~e---el~q~v~~TTrPLlRQIE~lQ~tl~ 654 (961)
T KOG4673|consen 621 LQAAERRCE---ELIQQVPETTRPLLRQIEALQETLS 654 (961)
T ss_pred HHHHHHHHH---HHHhhccccccHHHHHHHHHHHHHh
Confidence 444433221 1345577778888888888877653
No 405
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.21 E-value=4.4e+02 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=22.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLER 614 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 614 (729)
|.+|.+....+..-|......|..|++.+..
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~ 57 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQ 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666677787777888888877653
No 406
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.08 E-value=6.1e+02 Score=23.13 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
...+.-...|=..|..+|+.|..|+++...|+.++...+.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566778888888888888888888775543
No 407
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.08 E-value=6.4e+02 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
..+-+||+.++.++...|..+..|+.|.-
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 408
>KOG0689 consensus Guanine nucleotide exchange factor for Rho and Rac GTPases [Signal transduction mechanisms]
Probab=21.85 E-value=71 Score=36.79 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCcceEEEecCCCcce-eEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 86 DKKLLTVLFPDGRDGR-AFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 86 ~Kk~~fvit~~~~~gr-ty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.....|.+..+.+..+ +|.++|-+.++.+.|+.+|...+-
T Consensus 321 ~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~ 361 (448)
T KOG0689|consen 321 NSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLW 361 (448)
T ss_pred CCCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHH
Confidence 3445677766544433 799999999999999999987763
No 409
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.78 E-value=7.9e+02 Score=24.32 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 619 LHERRLALEQDVSRLQEQLQAER 641 (729)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~ 641 (729)
+.++-.+++.+...+++.++...
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333344444444444444443
No 410
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.70 E-value=4.3e+02 Score=23.10 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
.|.+.+..|+.+||+=+ .+++. -+| |.....+-..+|+.||+.+.+..+-+..++.+
T Consensus 25 d~~~~~~~lk~Klq~ar---~~i~~----lpg-------i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKAR---AAIRE----LPG-------IDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHh----CCC-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999998644 33332 111 45555677778888888877777766666543
No 411
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.59 E-value=5.1e+02 Score=22.02 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 625 ALEQDVSRLQEQLQ---AERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 625 ~Le~~V~~L~~~L~---~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
.||++|..||.+|. .....+-+.-..|..- --..+.-|..+=.++.+|..++..|+.+|-..|
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E-------------Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRE-------------RDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47777777777662 2333333333333210 011223344444555566666666666654433
No 412
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.48 E-value=1.1e+02 Score=35.51 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
..++.+|+.|+.+|..||+|+.+|..++.
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 34566788888888888888777776664
No 413
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.43 E-value=4e+02 Score=27.27 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
||+|-.+|+++|..|+.-+..+|.-.. .-++.|++|..++++=|.-|
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~--------------------K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHK--------------------KLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887544 34677888888888766544
No 414
>PRK13411 molecular chaperone DnaK; Provisional
Probab=21.28 E-value=6.5e+02 Score=30.47 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.++++++.+.|-+||.-+-+++..|+
T Consensus 521 D~~~~~~~eakN~lEs~iy~~r~~l~ 546 (653)
T PRK13411 521 DRRRKQLIELKNQADSLLYSYESTLK 546 (653)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777775
No 415
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=21.24 E-value=2e+02 Score=25.63 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=28.5
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
..|.++. +++|+..|.+..|+..++..|-+...
T Consensus 57 ~~F~l~~----~k~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 57 PEFDLTF----DKPYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp TEEEEES----SSEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCEEEEE----CCCcEEEeCCHHHHHHHHHHHHHHhc
Confidence 4688887 68999999999999999999977643
No 416
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.23 E-value=1.2e+02 Score=37.66 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.4
Q ss_pred CccccCCC
Q 004803 200 GILRQAAD 207 (729)
Q Consensus 200 GIFR~sg~ 207 (729)
|.|.-+|+
T Consensus 1272 G~FHP~g~ 1279 (1516)
T KOG1832|consen 1272 GGFHPSGN 1279 (1516)
T ss_pred ccccCCCc
Confidence 44444443
No 417
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=5.3e+02 Score=29.69 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=49.9
Q ss_pred hhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 004803 607 ILQASLERRK--QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (729)
Q Consensus 607 ~~~~~~~~~~--~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~ 684 (729)
+++.++.+|+ ...-+.=.+|+.+..+|+.+++.=+..|..|-..+.+... .... .+.+|++|+..+=.++..
T Consensus 13 ~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~-----~~~~-~~~~l~~e~~~l~~~l~~ 86 (429)
T COG0172 13 AVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALK-----RGED-DAEELIAEVKELKEKLKE 86 (429)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccch-hHHHHHHHHHHHHHHHHh
Confidence 3555555553 2223334445555555555554444555555555542111 1122 567888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 004803 685 LKQKVAELHHQLNQQ 699 (729)
Q Consensus 685 le~~~~~l~~~l~~~ 699 (729)
+|.++.++..+|.+-
T Consensus 87 ~e~~~~~~~~~l~~~ 101 (429)
T COG0172 87 LEAALDELEAELDTL 101 (429)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887777654
No 418
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=21.10 E-value=5.2e+02 Score=30.12 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (729)
|.++++|...++.|||.|..-++-+.+-.+.
T Consensus 290 ~r~~~~~~~~~~~Q~Q~~~~~~~~~~~~~~~ 320 (659)
T KOG4140|consen 290 EREFDPDIHCGVIQLQTKKPCTRSLTCKTHS 320 (659)
T ss_pred HhhhhhhhhhhhHhhccCCCcchhHHHhhhH
Confidence 3478999999999999999988888766543
No 419
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.98 E-value=6.8e+02 Score=27.47 Aligned_cols=6 Identities=17% Similarity=0.136 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004803 675 IALAEA 680 (729)
Q Consensus 675 ia~~E~ 680 (729)
|+.+|+
T Consensus 80 l~~le~ 85 (314)
T PF04111_consen 80 LEELEE 85 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 420
>PF14282 FlxA: FlxA-like protein
Probab=20.90 E-value=6.2e+02 Score=23.13 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASL-ERRKQALHERRLALEQDVSRLQEQLQAE 640 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~r~~Le~~V~~L~~~L~~e 640 (729)
.-.|++|+.-...|+.+|. +++.+.-+=+.- ..+.+.+...-..|+..+.+|+.+..++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999996 566654332111 2222333444444444444444444333
No 421
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=20.34 E-value=4.5e+02 Score=27.78 Aligned_cols=64 Identities=23% Similarity=0.237 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQLQAERD-LRAALEVG 650 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~---~~~~~~~~~r~~Le~~V~~L~~~L~~e~~-~~~~Le~~ 650 (729)
+|..+..|+....+..+.+..|.+.+. .....+.+-+..-+.++.+||.+|..=+. +..+-+..
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666552 23335566677778888888888875444 44444443
No 422
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.32 E-value=1.2e+03 Score=27.94 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQAS 611 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 611 (729)
.+.+++-|...-.+|..+|.+=...-.-|+++
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~ 357 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSS 357 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433333334433
No 423
>smart00338 BRLZ basic region leucin zipper.
Probab=20.17 E-value=2.2e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 670 AELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
+|=.+|..|+.+...|..+|..|..++..-+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 424
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.14 E-value=8.2e+02 Score=24.44 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
...+.++|-.||+..|.++..|++|...|..
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888888888888888887764
No 425
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.09 E-value=9e+02 Score=30.55 Aligned_cols=116 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHHHhh
Q 004803 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL------QEQLQA-----ERDLRAALEVGL 651 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L------~~~L~~-----e~~~~~~Le~~l 651 (729)
.|.-+|.+-.|||.+|. -|=|-...=..|--++=.|.++=..||.+|..| ++||++ |.+||.-|+-+=
T Consensus 425 ~~d~aEs~iadlkEQVD-AAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 425 ELDQAESTIADLKEQVD-AALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-HhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004803 652 SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGS 706 (729)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s 706 (729)
++. .-+-....+-.+-|.-.--+|.+.-+-|..|+.||..++.++.+|
T Consensus 504 g~~-------kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 504 GAR-------KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred hHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 426
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.07 E-value=4.5e+02 Score=28.41 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~ 690 (729)
|++-|+....|.+.|+---+-||+|=|+..+-+.-. .+|.+-...|. ....+...-+.|-.|+.+=|.-|..||-++.
T Consensus 27 ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~-s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~ 105 (307)
T PF10481_consen 27 LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY-SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN 105 (307)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 445555555555555555555555544433222100 11111111121 1222334444555566665666655555555
Q ss_pred HHHHHH
Q 004803 691 ELHHQL 696 (729)
Q Consensus 691 ~l~~~l 696 (729)
..+.+|
T Consensus 106 s~Kkqi 111 (307)
T PF10481_consen 106 SCKKQI 111 (307)
T ss_pred HHHHHH
Confidence 555444
Done!