Query 004803
Match_columns 729
No_of_seqs 552 out of 2419
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 8.1E-41 2.8E-45 340.0 16.2 202 155-375 9-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 1.1E-40 3.6E-45 335.8 15.4 196 159-372 6-201 (201)
3 2ee4_A RHO GTPase activating p 100.0 1.4E-40 4.8E-45 337.1 15.3 198 161-377 8-207 (209)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 3.6E-40 1.2E-44 338.7 15.6 208 155-376 11-223 (229)
5 1tx4_A P50-rhogap; complex (GT 100.0 9.4E-40 3.2E-44 328.4 15.0 193 159-372 2-198 (198)
6 1f7c_A Rhogap protein; GTPase 100.0 8E-40 2.7E-44 336.6 14.5 194 164-376 17-220 (231)
7 2osa_A N-chimaerin; RHO-GAP, G 100.0 2.5E-39 8.5E-44 326.3 17.1 192 163-372 6-202 (202)
8 3fk2_A Glucocorticoid receptor 100.0 1.2E-39 4.2E-44 338.2 15.2 196 160-374 48-245 (246)
9 1ow3_A RHO-GTPase-activating p 100.0 1.1E-38 3.6E-43 330.4 15.0 197 159-376 38-238 (242)
10 1pbw_A Rhogap domain, phosphat 100.0 1.7E-38 5.7E-43 323.6 11.5 191 163-376 5-202 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.3E-37 4.6E-42 319.4 16.5 209 161-371 16-228 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.3E-36 4.3E-41 306.4 17.2 190 168-374 4-196 (201)
13 3eap_A RHO GTPase-activating p 100.0 2.1E-36 7.3E-41 318.1 13.8 200 159-376 58-261 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 4.8E-35 1.7E-39 329.6 15.1 192 163-372 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 2.6E-36 9E-41 306.8 3.2 192 162-376 19-213 (214)
16 3qis_A Inositol polyphosphate 100.0 3E-31 1E-35 290.1 15.5 141 179-327 198-338 (366)
17 1wi1_A Calcium-dependent activ 99.7 2.9E-17 1E-21 152.2 10.9 104 15-127 4-112 (126)
18 1x1f_A Signal-transducing adap 99.7 1.1E-16 3.7E-21 153.7 14.6 94 18-125 17-113 (149)
19 1v88_A Oxysterol binding prote 99.7 1.1E-16 3.7E-21 150.2 12.5 103 15-129 4-128 (130)
20 1wgq_A FYVE, rhogef and PH dom 99.7 3.6E-16 1.2E-20 140.6 11.0 102 15-129 4-107 (109)
21 2rsg_A Collagen type IV alpha- 99.7 2.3E-16 7.7E-21 138.3 8.9 92 19-123 1-92 (94)
22 1v5u_A SBF1, SET binding facto 99.6 3.8E-16 1.3E-20 141.6 10.6 102 14-129 3-115 (117)
23 1dyn_A Dynamin; signal transdu 99.6 7.5E-16 2.6E-20 141.6 12.0 100 18-123 11-115 (125)
24 2da0_A 130-kDa phosphatidylino 99.6 1E-15 3.5E-20 139.3 12.8 101 12-128 3-104 (114)
25 1v89_A Hypothetical protein KI 99.6 1.3E-15 4.4E-20 137.9 13.2 104 15-129 4-116 (118)
26 2p0d_A RHO GTPase-activating p 99.6 6.3E-16 2.1E-20 144.4 11.0 112 14-127 7-126 (129)
27 1pls_A Pleckstrin homology dom 99.6 1.2E-15 4.2E-20 137.8 12.5 98 17-127 3-103 (113)
28 2i5f_A Pleckstrin; PH domain, 99.6 2.7E-15 9.3E-20 134.2 13.7 97 15-124 3-108 (109)
29 2cod_A Centaurin-delta 1; ARF 99.6 1.9E-15 6.6E-20 137.1 12.7 98 14-127 3-101 (115)
30 2lul_A Tyrosine-protein kinase 99.6 2.8E-15 9.6E-20 145.8 14.4 105 14-129 10-125 (164)
31 1v5p_A Pleckstrin homology dom 99.6 1.7E-15 5.8E-20 141.2 12.3 106 14-129 10-124 (126)
32 2w2x_D 1-phosphatidylinositol- 99.6 1.5E-16 5.2E-21 147.5 5.1 107 15-127 8-121 (124)
33 2dhk_A TBC1 domain family memb 99.6 1.6E-15 5.4E-20 139.2 11.7 98 15-126 4-105 (119)
34 1fgy_A GRP1; PH domain, signal 99.6 2.9E-15 9.9E-20 137.5 13.0 102 17-129 3-124 (127)
35 1eaz_A Tandem PH domain contai 99.6 1.9E-15 6.4E-20 138.6 11.6 100 14-127 9-113 (125)
36 2d9v_A Pleckstrin homology dom 99.6 2.5E-15 8.7E-20 140.1 12.7 107 14-126 3-115 (130)
37 3cxb_B Pleckstrin homology dom 99.6 2.7E-15 9.1E-20 136.7 12.4 95 20-126 1-102 (112)
38 2yry_A Pleckstrin homology dom 99.6 8.1E-15 2.8E-19 133.9 15.6 99 14-125 17-120 (122)
39 2dn6_A KIAA0640 protein; PH do 99.6 2.6E-15 9E-20 135.6 12.1 99 15-127 4-105 (115)
40 1x1g_A Pleckstrin 2; PH domain 99.6 5.1E-15 1.8E-19 136.7 14.2 99 14-125 13-124 (129)
41 2dkp_A Pleckstrin homology dom 99.6 5.6E-15 1.9E-19 136.1 14.3 99 14-125 16-119 (128)
42 1unq_A RAC-alpha serine/threon 99.6 1.3E-15 4.5E-20 140.2 9.8 108 15-128 4-113 (125)
43 1x05_A Pleckstrin; PH domain, 99.6 7.1E-15 2.4E-19 135.9 14.3 101 14-127 13-122 (129)
44 1fao_A Dual adaptor of phospho 99.6 4E-15 1.4E-19 137.1 12.5 99 14-126 13-113 (126)
45 3a8p_A T-lymphoma invasion and 99.6 8.6E-17 3E-21 168.2 -0.4 109 15-128 7-127 (263)
46 1u5d_A SKAP55, SRC kinase-asso 99.6 7.7E-15 2.6E-19 130.5 12.1 98 18-126 2-106 (108)
47 1upq_A PEPP1; PH domain, phosp 99.6 1.1E-14 3.8E-19 133.2 13.3 102 15-125 7-109 (123)
48 2d9x_A Oxysterol binding prote 99.6 2.9E-15 1E-19 137.3 9.4 101 15-127 4-106 (120)
49 1btk_A Bruton'S tyrosine kinas 99.6 3.7E-15 1.3E-19 145.8 10.6 104 18-129 2-136 (169)
50 2coc_A FYVE, rhogef and PH dom 99.6 6.7E-15 2.3E-19 134.5 11.2 100 17-127 6-108 (112)
51 1wg7_A Dedicator of cytokinesi 99.6 5.7E-15 2E-19 140.4 11.2 100 15-127 14-126 (150)
52 1wjm_A Beta-spectrin III; PH d 99.6 4E-15 1.4E-19 136.9 9.6 110 15-129 4-121 (123)
53 4a6h_A Phosphatidylinositol 4, 99.6 5.4E-15 1.9E-19 136.7 10.4 100 19-124 6-117 (120)
54 2cof_A Protein KIAA1914; PH do 99.6 3.9E-15 1.3E-19 133.7 9.1 98 15-125 4-101 (107)
55 3rcp_A Pleckstrin homology dom 99.6 6.3E-15 2.2E-19 130.9 10.1 96 21-128 1-96 (103)
56 2d9y_A Pleckstrin homology dom 99.6 1.3E-14 4.5E-19 131.4 12.2 102 15-125 7-109 (117)
57 2y7b_A Actin-binding protein a 99.6 3.9E-15 1.3E-19 138.4 8.3 101 16-125 2-128 (134)
58 1u5f_A SRC-associated adaptor 99.6 1.4E-14 4.7E-19 137.7 12.3 101 15-126 13-120 (148)
59 3pp2_A RHO GTPase-activating p 99.6 1.2E-14 4.1E-19 134.8 11.2 109 15-125 4-123 (124)
60 2j59_M RHO-GTPase activating p 99.6 1.3E-14 4.3E-19 140.9 11.2 101 18-128 2-114 (168)
61 2rlo_A Centaurin-gamma 1; spli 99.5 2E-14 6.9E-19 133.4 11.8 104 18-125 3-124 (128)
62 3aj4_A Pleckstrin homology dom 99.5 1.3E-14 4.6E-19 130.8 8.7 103 17-125 3-111 (112)
63 1u5e_A SRC-associated adaptor 99.5 3.6E-14 1.2E-18 143.7 12.4 99 17-126 104-209 (211)
64 1dro_A Beta-spectrin; cytoskel 99.5 1E-14 3.5E-19 134.3 7.6 109 15-126 4-120 (122)
65 1btn_A Beta-spectrin; signal t 99.5 6.9E-14 2.4E-18 124.3 9.1 96 21-123 1-106 (106)
66 4h8s_A DCC-interacting protein 99.5 7.3E-14 2.5E-18 154.5 11.1 103 14-127 296-400 (407)
67 3tfm_A Myosin X; split PH doma 99.5 1.1E-13 3.8E-18 141.5 11.2 99 16-128 55-158 (228)
68 2dtc_A RAL guanine nucleotide 99.4 6.2E-13 2.1E-17 123.7 13.2 103 20-127 2-114 (126)
69 2r09_A Cytohesin-3; autoinhibi 99.4 2.9E-13 9.8E-18 146.9 12.3 102 18-130 212-333 (347)
70 2q13_A DCC-interacting protein 99.4 2.9E-13 9.8E-18 148.7 11.9 99 16-126 275-376 (385)
71 3lju_X ARF-GAP with dual PH do 99.4 5.6E-13 1.9E-17 146.6 12.6 98 15-126 265-373 (386)
72 1qqg_A IRS-1, insulin receptor 99.4 5.9E-13 2E-17 139.2 8.8 101 14-127 5-114 (264)
73 3tca_A Amyloid beta A4 precurs 99.4 1.3E-12 4.5E-17 137.1 10.3 105 18-125 167-276 (291)
74 2rov_A RHO-associated protein 99.3 4E-12 1.4E-16 116.9 7.6 99 21-125 3-115 (117)
75 2fjl_A 1-phosphatidylinositol- 99.3 1.7E-11 6E-16 116.4 12.1 105 20-126 2-149 (150)
76 3lju_X ARF-GAP with dual PH do 99.2 1.4E-11 4.6E-16 135.6 10.4 95 19-124 146-245 (386)
77 2ys3_A UNC-112-related protein 99.2 5.4E-11 1.8E-15 111.2 10.3 99 18-124 8-111 (137)
78 4ejn_A RAC-alpha serine/threon 99.2 4.9E-11 1.7E-15 132.5 10.6 104 17-126 4-109 (446)
79 3a8n_A TIAM-1, T-lymphoma inva 99.2 1.9E-11 6.6E-16 128.1 6.7 106 15-125 7-124 (279)
80 2d9w_A Docking protein 2; PH d 99.1 3.6E-10 1.2E-14 103.7 11.6 103 14-125 7-121 (127)
81 3hk0_A Growth factor receptor- 99.1 5E-10 1.7E-14 116.2 11.7 106 17-125 130-240 (256)
82 4gmv_A RAS-associated and plec 99.0 1.1E-09 3.6E-14 115.1 10.5 106 17-125 156-266 (281)
83 1w1g_A HPDK1, 3-phosphoinositi 99.0 2.4E-09 8.3E-14 101.7 10.3 94 14-126 47-140 (151)
84 4f7h_A Fermitin family homolog 98.9 3.7E-09 1.3E-13 101.2 10.2 102 19-125 47-150 (173)
85 4bbk_A Kindlin-1, fermitin fam 98.9 3.5E-09 1.2E-13 100.3 9.7 102 19-125 26-129 (165)
86 2coa_A Protein kinase C, D2 ty 98.5 2.6E-07 9E-12 84.7 9.5 98 14-125 3-119 (125)
87 2d9z_A Protein kinase C, NU ty 98.5 9E-07 3.1E-11 81.4 12.0 98 14-125 3-123 (129)
88 1v5m_A SH2 and PH domain-conta 97.8 0.00022 7.7E-09 65.8 12.7 106 14-126 13-131 (136)
89 3tfm_A Myosin X; split PH doma 97.4 0.00013 4.4E-09 74.1 5.8 40 16-57 18-57 (228)
90 2lg1_A A-kinase anchor protein 97.3 0.00088 3E-08 66.0 9.9 104 17-128 69-175 (185)
91 3ml4_A Protein DOK-7; tyrosine 97.2 0.00074 2.5E-08 67.7 8.6 98 17-125 7-113 (224)
92 1v61_A RAC/CDC42 guanine nucle 96.8 0.0042 1.4E-07 57.9 9.2 85 38-128 45-129 (132)
93 3p6a_A RHO guanine nucleotide 96.7 0.0092 3.1E-07 64.4 12.4 104 16-127 256-373 (377)
94 3t06_A PDZ-rhogef, RHO guanine 96.6 0.01 3.5E-07 65.1 12.1 106 16-129 292-412 (418)
95 3odw_A RHO guanine nucleotide 96.6 0.0082 2.8E-07 68.4 11.4 107 16-130 409-529 (536)
96 1zc3_B Exocyst complex protein 96.3 0.043 1.5E-06 49.5 11.9 102 15-125 4-107 (113)
97 3mpx_A FYVE, rhogef and PH dom 96.2 0.02 6.9E-07 63.0 11.1 99 15-126 240-338 (434)
98 1xcg_A PDZ-rhogef, RHO guanine 96.1 0.039 1.3E-06 59.3 12.6 103 16-126 250-367 (368)
99 1nty_A Triple functional domai 96.0 0.049 1.7E-06 57.3 12.8 106 18-126 202-309 (311)
100 1txd_A RHO guanine nucleotide 96.0 0.019 6.3E-07 62.4 9.7 109 16-128 254-372 (385)
101 1dbh_A Protein (human SOS 1); 95.8 0.067 2.3E-06 57.2 12.8 102 16-126 244-350 (354)
102 1mai_A Phospholipase C delta-1 95.7 0.079 2.7E-06 48.9 11.1 40 87-127 84-123 (131)
103 2rgn_B RHOA/RAC/CDC42 exchange 95.6 0.073 2.5E-06 57.1 12.3 109 17-126 205-319 (354)
104 3zvr_A Dynamin-1; hydrolase, D 95.5 0.058 2E-06 63.9 12.0 99 19-123 540-643 (772)
105 3qwm_A Iqsec1, IQ motif and SE 95.5 0.18 6.1E-06 47.3 12.9 105 18-126 12-123 (140)
106 2dfk_A Collybistin II; DH doma 95.3 0.15 5.2E-06 55.7 13.7 110 15-127 253-365 (402)
107 2pz1_A RHO guanine nucleotide 95.1 0.14 4.9E-06 56.8 12.9 104 16-127 331-442 (466)
108 1kz7_A Guanine nucleotide exch 95.0 0.25 8.6E-06 52.9 14.2 109 17-127 208-327 (353)
109 2vrw_B P95VAV, VAV1, proto-onc 95.0 0.18 6E-06 55.0 13.1 103 18-126 233-336 (406)
110 3o0z_A RHO-associated protein 94.7 0.9 3.1E-05 43.6 15.3 87 618-704 59-160 (168)
111 3ol1_A Vimentin; structural ge 94.4 0.29 1E-05 44.6 10.8 38 587-624 18-55 (119)
112 2z0q_A XPLN, RHO guanine nucle 94.1 0.25 8.5E-06 52.5 11.4 99 16-124 229-345 (346)
113 2dfs_A Myosin-5A; myosin-V, in 94.0 0.21 7.3E-06 61.4 11.7 100 584-697 923-1047(1080)
114 3ky9_A Proto-oncogene VAV; cal 93.6 0.22 7.5E-06 57.2 10.5 103 18-126 405-508 (587)
115 3jzy_A Intersectin 2; C2 domai 93.0 0.018 6.2E-07 64.5 0.0 99 17-127 251-364 (510)
116 3ksy_A SOS-1, SON of sevenless 92.4 0.36 1.2E-05 59.3 10.3 101 16-127 441-548 (1049)
117 3swk_A Vimentin; cytoskeleton, 91.9 1.4 4.8E-05 37.8 10.5 79 592-698 3-81 (86)
118 3v5w_A G-protein coupled recep 91.8 0.66 2.2E-05 54.3 11.1 97 14-125 554-652 (689)
119 2ke4_A CDC42-interacting prote 91.4 0.65 2.2E-05 40.9 8.0 75 620-694 14-90 (98)
120 2fxo_A Myosin heavy chain, car 90.9 3.5 0.00012 37.8 12.9 31 613-643 33-63 (129)
121 1foe_A T-lymphoma invasion and 89.9 1.9 6.5E-05 46.2 11.9 88 36-125 258-366 (377)
122 3oja_B Anopheles plasmodium-re 86.7 5.9 0.0002 44.8 13.9 33 669-701 533-565 (597)
123 2eqb_B RAB guanine nucleotide 85.0 7.5 0.00026 34.0 10.2 34 618-651 16-49 (97)
124 3mq9_A Bone marrow stromal ant 84.5 2.8 9.6E-05 46.3 9.6 77 618-700 394-470 (471)
125 2v71_A Nuclear distribution pr 79.6 3.5 0.00012 40.4 6.9 34 664-697 135-178 (189)
126 3na7_A HP0958; flagellar bioge 78.5 40 0.0014 34.1 15.0 33 665-697 89-121 (256)
127 3oja_B Anopheles plasmodium-re 72.8 26 0.00088 39.5 12.9 34 584-617 458-491 (597)
128 2w6b_A RHO guanine nucleotide 70.4 9 0.00031 29.7 5.5 35 618-652 14-48 (56)
129 1kd8_B GABH BLL, GCN4 acid bas 69.9 6.9 0.00024 27.7 4.4 28 612-639 6-33 (36)
130 1m1j_C Fibrinogen gamma chain; 69.9 37 0.0013 37.1 12.6 85 608-694 25-112 (409)
131 2fxo_A Myosin heavy chain, car 69.7 65 0.0022 29.2 13.5 84 582-693 41-124 (129)
132 1gmj_A ATPase inhibitor; coile 69.4 36 0.0012 28.8 9.6 55 613-694 23-79 (84)
133 1z87_A Alpha-1-syntrophin; pro 68.9 7.2 0.00024 40.1 6.4 38 86-125 224-262 (263)
134 2ocy_A RAB guanine nucleotide 68.9 48 0.0016 31.3 11.5 34 619-652 49-82 (154)
135 3c3f_A Alpha/beta peptide with 67.7 7 0.00024 27.3 4.0 27 612-638 6-32 (34)
136 1m1j_B Fibrinogen beta chain; 67.6 84 0.0029 34.8 15.0 31 607-637 125-155 (464)
137 1kd8_A GABH AIV, GCN4 acid bas 67.5 8.3 0.00028 27.3 4.4 27 612-638 6-32 (36)
138 3ol1_A Vimentin; structural ge 66.7 50 0.0017 29.6 10.9 29 621-649 62-90 (119)
139 3c3g_A Alpha/beta peptide with 66.5 7.8 0.00027 26.9 4.0 27 612-638 5-31 (33)
140 3m48_A General control protein 66.1 7.4 0.00025 27.1 3.8 28 611-638 4-31 (33)
141 1i84_S Smooth muscle myosin he 65.1 9.2 0.00031 47.5 7.5 35 617-651 916-950 (1184)
142 2oxj_A Hybrid alpha/beta pepti 64.8 11 0.00039 26.3 4.6 28 611-638 5-32 (34)
143 3mq9_A Bone marrow stromal ant 63.9 19 0.00066 39.4 9.2 34 608-641 430-463 (471)
144 3na7_A HP0958; flagellar bioge 63.6 80 0.0027 31.9 13.1 97 581-690 59-167 (256)
145 1uo4_A General control protein 62.8 10 0.00035 26.6 4.1 27 612-638 6-32 (34)
146 2hy6_A General control protein 62.2 12 0.00042 26.1 4.4 26 612-637 6-31 (34)
147 2dfs_A Myosin-5A; myosin-V, in 61.4 79 0.0027 38.8 14.7 16 287-302 409-424 (1080)
148 3he5_A Synzip1; heterodimeric 61.0 28 0.00096 25.3 6.3 16 675-690 33-48 (49)
149 2p22_A Suppressor protein STP2 60.8 1.2E+02 0.0041 29.1 14.0 109 581-689 11-138 (174)
150 4dzn_A Coiled-coil peptide CC- 60.5 17 0.0006 24.4 4.7 24 674-697 3-26 (33)
151 3v6i_B V-type ATP synthase, su 60.1 36 0.0012 29.8 8.0 58 580-637 15-73 (105)
152 2e7s_A RAB guanine nucleotide 59.9 19 0.00065 33.3 6.7 28 624-651 42-69 (135)
153 2wq1_A General control protein 59.1 15 0.00052 25.5 4.4 26 612-637 5-30 (33)
154 3ghg_A Fibrinogen alpha chain; 59.0 13 0.00044 41.5 6.3 57 667-723 125-181 (562)
155 3thf_A Protein shroom; coiled- 58.6 84 0.0029 30.5 11.3 113 583-698 20-187 (190)
156 1kd8_A GABH AIV, GCN4 acid bas 58.3 15 0.00052 26.0 4.3 28 664-691 6-33 (36)
157 1g6u_A Domain swapped dimer; d 57.4 15 0.0005 26.7 4.3 25 673-697 20-44 (48)
158 3ra3_B P2F; coiled coil domain 56.9 8.2 0.00028 25.0 2.6 21 667-687 8-28 (28)
159 1x79_B RAB GTPase binding effe 56.4 1.1E+02 0.0038 27.3 10.9 69 620-694 5-73 (112)
160 2adz_A Alpha-1-syntrophin; pro 55.9 14 0.00048 35.8 5.4 37 87-125 140-177 (178)
161 3o0z_A RHO-associated protein 55.6 33 0.0011 32.8 7.8 32 620-651 40-71 (168)
162 3tnu_A Keratin, type I cytoske 55.4 67 0.0023 29.2 9.8 61 626-699 43-103 (131)
163 3hie_A Protein PSL1, exocyst c 54.7 1.2E+02 0.0041 29.1 11.6 82 37-127 64-150 (171)
164 2bni_A General control protein 54.6 15 0.00052 25.7 3.8 27 612-638 6-32 (34)
165 1ses_A Seryl-tRNA synthetase; 54.4 59 0.002 35.5 10.8 67 625-700 32-98 (421)
166 1f5n_A Interferon-induced guan 52.4 56 0.0019 37.4 10.6 46 599-644 467-517 (592)
167 1wt6_A Myotonin-protein kinase 52.3 45 0.0015 28.0 7.1 50 590-639 11-70 (81)
168 1kd8_B GABH BLL, GCN4 acid bas 52.2 26 0.00088 24.8 4.7 27 665-691 7-33 (36)
169 2wq1_A General control protein 50.9 21 0.00072 24.8 4.0 25 664-688 5-29 (33)
170 3a7p_A Autophagy protein 16; c 50.3 1.7E+02 0.0057 27.5 11.5 113 566-701 18-138 (152)
171 1cxz_B Protein (PKN); protein- 50.2 84 0.0029 26.8 8.6 54 626-697 23-80 (86)
172 1fho_A UNC-89; pleckstrin homo 50.1 23 0.00077 31.9 5.5 99 18-124 9-111 (119)
173 3k29_A Putative uncharacterize 50.0 1.8E+02 0.006 27.7 12.2 73 616-701 22-106 (169)
174 2l5g_B Putative uncharacterize 49.9 31 0.001 25.4 5.0 30 670-699 6-35 (42)
175 3lay_A Zinc resistance-associa 49.5 1.1E+02 0.0036 29.5 10.4 74 613-699 70-143 (175)
176 3m48_A General control protein 49.0 20 0.00068 25.0 3.6 24 664-687 5-28 (33)
177 1cxz_B Protein (PKN); protein- 48.8 40 0.0014 28.7 6.4 26 578-603 14-39 (86)
178 3tnu_B Keratin, type II cytosk 45.7 1.2E+02 0.004 27.4 9.7 61 626-699 41-101 (129)
179 1uii_A Geminin; human, DNA rep 45.5 33 0.0011 29.0 5.3 27 669-695 49-75 (83)
180 3a58_A Exocyst complex compone 45.4 66 0.0023 33.6 8.7 83 35-126 132-219 (320)
181 3he4_A Synzip6; heterodimeric 44.9 8.4 0.00029 28.8 1.4 42 592-637 6-47 (56)
182 1uo4_A General control protein 44.7 25 0.00086 24.6 3.6 24 664-687 6-29 (34)
183 1fmh_A General control protein 44.4 47 0.0016 22.3 4.8 25 669-693 4-28 (33)
184 3ghg_C Fibrinogen gamma chain; 43.7 1.6E+02 0.0056 32.0 12.0 90 608-697 25-115 (411)
185 3c3f_A Alpha/beta peptide with 43.5 27 0.00092 24.4 3.6 25 664-688 6-30 (34)
186 1i84_S Smooth muscle myosin he 43.4 26 0.00087 43.5 6.3 15 288-302 436-450 (1184)
187 3bas_A Myosin heavy chain, str 43.1 61 0.0021 27.5 6.9 25 613-637 62-86 (89)
188 3ibp_A Chromosome partition pr 42.9 1.1E+02 0.0038 31.8 9.8 65 609-673 12-76 (302)
189 3swy_A Cyclic nucleotide-gated 42.5 60 0.002 24.4 5.8 39 578-616 1-39 (46)
190 2dq3_A Seryl-tRNA synthetase; 42.4 96 0.0033 33.9 10.1 70 622-693 31-102 (425)
191 1quu_A Human skeletal muscle a 41.8 2.6E+02 0.0089 27.3 13.8 121 578-698 48-197 (250)
192 2dq0_A Seryl-tRNA synthetase; 41.6 1E+02 0.0035 33.9 10.3 34 667-700 70-103 (455)
193 4etp_A Kinesin-like protein KA 41.3 24 0.00082 38.4 5.0 43 612-654 15-57 (403)
194 2xus_A Breast cancer metastasi 41.2 26 0.00088 26.8 3.6 22 681-702 14-35 (49)
195 3qne_A Seryl-tRNA synthetase, 40.6 55 0.0019 36.6 7.8 34 668-701 73-106 (485)
196 2w83_C C-JUN-amino-terminal ki 40.4 36 0.0012 28.3 4.6 49 586-638 27-75 (77)
197 1c1g_A Tropomyosin; contractIl 40.1 2.5E+02 0.0086 26.7 15.3 14 624-637 93-106 (284)
198 3edu_A Beta-I spectrin, spectr 40.1 1.7E+02 0.0059 28.0 10.8 119 580-701 36-175 (218)
199 1l8d_A DNA double-strand break 39.1 1.8E+02 0.0062 25.1 9.7 23 616-638 19-41 (112)
200 1fxk_A Prefoldin; archaeal pro 38.7 1.2E+02 0.0043 25.8 8.5 84 618-701 12-100 (107)
201 2pnv_A Small conductance calci 37.8 57 0.002 24.2 5.0 31 608-638 10-40 (43)
202 1urf_A Protein kinase C-like 1 37.7 74 0.0025 26.7 6.2 67 627-704 7-74 (81)
203 3lbx_B Beta-I spectrin, spectr 36.5 1.9E+02 0.0066 27.0 10.2 114 580-694 39-171 (185)
204 3oja_A Leucine-rich immune mol 36.0 1.4E+02 0.0048 32.5 10.4 30 613-642 359-388 (487)
205 3ra3_A P1C; coiled coil domain 35.8 17 0.00059 23.6 1.6 20 674-693 8-27 (28)
206 2z5i_A TM, general control pro 35.7 53 0.0018 25.3 4.7 27 676-702 8-34 (52)
207 2zqm_A Prefoldin beta subunit 35.5 1.3E+02 0.0046 26.0 8.2 82 618-699 17-110 (117)
208 4dzn_A Coiled-coil peptide CC- 34.2 73 0.0025 21.4 4.5 28 668-695 4-31 (33)
209 3pk1_B Apoptosis regulator BAX 34.1 18 0.00063 25.2 1.7 16 596-611 17-32 (34)
210 2yy0_A C-MYC-binding protein; 34.1 56 0.0019 25.2 4.7 35 664-698 17-51 (53)
211 3c3g_A Alpha/beta peptide with 34.1 47 0.0016 23.1 3.6 24 665-688 6-29 (33)
212 3s4r_A Vimentin; alpha-helix, 33.6 2.3E+02 0.0077 24.2 9.1 25 671-695 68-92 (93)
213 2r2v_A GCN4 leucine zipper; co 33.6 67 0.0023 22.5 4.4 25 613-637 7-31 (34)
214 4f61_I Stathmin-like domain R4 33.4 92 0.0032 31.4 7.3 50 599-648 127-187 (240)
215 2zkm_X 1-phosphatidylinositol- 32.9 70 0.0024 37.9 7.6 38 89-126 97-136 (799)
216 3mq7_A Bone marrow stromal ant 32.8 2.7E+02 0.0092 24.9 11.5 30 674-703 72-101 (121)
217 3ra3_A P1C; coiled coil domain 32.7 53 0.0018 21.3 3.5 24 674-697 1-24 (28)
218 1joc_A EEA1, early endosomal a 31.6 61 0.0021 29.3 5.3 32 668-699 6-37 (125)
219 3lss_A Seryl-tRNA synthetase; 31.6 1.1E+02 0.0036 34.2 8.3 35 667-701 100-139 (484)
220 2lf0_A Uncharacterized protein 31.3 1.7E+02 0.0057 26.3 7.8 52 625-688 7-58 (123)
221 2wt7_A Proto-oncogene protein 30.6 2E+02 0.0067 22.6 7.7 45 616-691 18-62 (63)
222 2v4h_A NF-kappa-B essential mo 30.6 1.5E+02 0.0052 26.2 7.4 21 618-638 87-107 (110)
223 3ghg_A Fibrinogen alpha chain; 30.4 1.8E+02 0.0062 32.5 9.6 64 623-704 112-193 (562)
224 3he4_A Synzip6; heterodimeric 30.4 43 0.0015 24.9 3.2 13 675-687 40-52 (56)
225 2pnv_A Small conductance calci 29.1 50 0.0017 24.5 3.4 22 676-697 19-40 (43)
226 1ci6_A Transcription factor AT 29.1 1.2E+02 0.004 24.0 6.0 21 618-638 13-33 (63)
227 2wvr_A Geminin; DNA replicatio 28.9 90 0.0031 30.6 6.2 13 674-686 130-142 (209)
228 3ulb_A Target of rapamycin com 28.6 3.3E+02 0.011 24.6 10.3 28 98-125 87-114 (121)
229 4emc_A Monopolin complex subun 28.5 1.6E+02 0.0054 28.6 7.7 14 625-638 24-37 (190)
230 1wle_A Seryl-tRNA synthetase; 28.4 2.9E+02 0.0099 30.8 11.2 35 666-700 116-150 (501)
231 2lw1_A ABC transporter ATP-bin 28.3 54 0.0018 27.7 4.1 25 673-697 22-46 (89)
232 3u06_A Protein claret segregat 28.2 62 0.0021 35.3 5.6 47 612-658 15-61 (412)
233 2jee_A YIIU; FTSZ, septum, coi 27.8 99 0.0034 26.0 5.4 32 664-695 11-42 (81)
234 1t2k_D Cyclic-AMP-dependent tr 27.7 96 0.0033 24.2 5.2 21 669-689 39-59 (61)
235 2bni_A General control protein 27.6 70 0.0024 22.4 3.6 24 664-687 6-29 (34)
236 2oxj_A Hybrid alpha/beta pepti 27.5 70 0.0024 22.4 3.6 24 664-687 6-29 (34)
237 3swf_A CGMP-gated cation chann 27.3 1.1E+02 0.0038 25.3 5.5 34 580-613 5-38 (74)
238 2oqq_A Transcription factor HY 26.8 95 0.0032 22.8 4.4 27 610-636 6-32 (42)
239 4dac_A Computationally designe 26.7 12 0.00043 24.2 -0.2 15 674-688 9-23 (28)
240 3qr0_A Phospholipase C-beta (P 26.5 2E+02 0.0069 34.2 9.9 37 89-125 104-142 (816)
241 2hy6_A General control protein 26.4 89 0.003 21.9 4.0 26 664-689 6-31 (34)
242 3kbt_A Beta-I spectrin, spectr 26.0 5.1E+02 0.017 25.9 12.4 119 580-698 145-281 (326)
243 1wlq_A Geminin; coiled-coil; 2 25.6 1.4E+02 0.0048 25.2 6.0 27 669-695 41-67 (83)
244 2jee_A YIIU; FTSZ, septum, coi 25.4 2.6E+02 0.009 23.4 7.6 61 584-648 15-76 (81)
245 3m0d_C TNF receptor-associated 25.3 2E+02 0.007 22.8 6.8 55 581-635 5-62 (65)
246 3ni0_A Bone marrow stromal ant 25.3 1E+02 0.0035 26.6 5.1 35 607-641 50-87 (99)
247 3hnw_A Uncharacterized protein 24.8 4E+02 0.014 24.3 10.6 21 669-689 113-133 (138)
248 4g2k_A General control protein 24.5 82 0.0028 28.4 4.6 49 662-710 17-65 (125)
249 1s1c_X RHO-associated, coiled- 24.2 2.9E+02 0.0098 22.6 7.4 13 632-644 43-55 (71)
250 1nkp_B MAX protein, MYC proto- 23.9 1E+02 0.0035 25.5 5.0 31 667-697 48-78 (83)
251 1ik9_A DNA repair protein XRCC 23.7 1.9E+02 0.0064 28.6 7.7 42 599-640 168-212 (213)
252 3he5_B Synzip2; heterodimeric 23.4 2.2E+02 0.0076 20.9 6.8 16 671-686 36-51 (52)
253 2r2v_A GCN4 leucine zipper; co 23.4 93 0.0032 21.8 3.6 23 665-687 7-29 (34)
254 2ocy_A RAB guanine nucleotide 23.3 4.7E+02 0.016 24.5 10.8 39 608-646 63-104 (154)
255 1lwu_C Fibrinogen gamma chain; 22.6 1.1E+02 0.0037 32.3 5.9 53 626-695 3-55 (323)
256 3mq7_A Bone marrow stromal ant 21.9 3.8E+02 0.013 24.0 8.3 32 608-639 58-89 (121)
257 3l4f_A RHO guanine nucleotide 21.9 1.8E+02 0.0061 23.1 5.5 35 618-652 11-45 (61)
258 3u1c_A Tropomyosin alpha-1 cha 21.2 3.9E+02 0.013 22.9 11.0 43 603-645 18-62 (101)
259 2dgc_A Protein (GCN4); basic d 21.0 1.1E+02 0.0036 24.4 4.3 24 674-697 38-61 (63)
260 4dyl_A Tyrosine-protein kinase 20.6 3.6E+02 0.012 28.8 9.9 63 626-698 328-391 (406)
261 1ci6_A Transcription factor AT 20.4 1.8E+02 0.0063 22.9 5.5 22 669-690 40-61 (63)
262 2v66_B Nuclear distribution pr 20.2 4.6E+02 0.016 23.2 11.3 83 584-683 12-101 (111)
263 1zme_C Proline utilization tra 20.1 74 0.0025 24.9 3.2 22 675-696 46-67 (70)
264 1g8x_A Myosin II heavy chain f 20.0 1.6E+02 0.0055 35.8 7.5 78 608-690 856-943 (1010)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=8.1e-41 Score=340.03 Aligned_cols=202 Identities=26% Similarity=0.401 Sum_probs=176.3
Q ss_pred ccCCCCCCCcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCC--CCC
Q 004803 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSA--DED 230 (729)
Q Consensus 155 ~k~k~~~~~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~--~~d 230 (729)
++.++..+.++||+||..++.. +..||.+|.+|+.||+++|+.+|||||++|+...|++|+..|++|. ..+.. ..|
T Consensus 9 l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d 88 (214)
T 3byi_A 9 LQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED 88 (214)
T ss_dssp HHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred HHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 4455667788999999999975 5689999999999999999999999999999999999999999985 33322 259
Q ss_pred ccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCC
Q 004803 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMT 310 (729)
Q Consensus 231 ~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt 310 (729)
+|+||++||.|||+||+||||.++|+.|+.+....+..+++..++.+| .+||++|+.+|+||+.||++|+.|++.|||+
T Consensus 89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~ 167 (214)
T 3byi_A 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLMS 167 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHcccCCCCC
Confidence 999999999999999999999999999999999989999999999966 5999999999999999999999999999999
Q ss_pred ccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 004803 311 PSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (729)
Q Consensus 311 ~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~ 375 (729)
+.|||+||||+|+|++.... +. +......+.+|++||+||+.||+++
T Consensus 168 ~~NLa~vf~P~Ll~~~~~~~------------~~------~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 168 TQSLGIVFGPTLLRAENETG------------NM------AIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHHHHHHHHHHHHCCTTSSS------------CH------HHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred HHHhHHHhccccCCCCCccH------------HH------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999873210 10 1123456789999999999999874
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=335.82 Aligned_cols=196 Identities=24% Similarity=0.400 Sum_probs=172.7
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhH
Q 004803 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (729)
.+.++.+||++|..++++ ++||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.|........|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 345678999999999875 5799999999999999999999999999999999999999999975555678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL-DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhh
Confidence 9999999999999999999999999989999999999965 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
||+|||++..... .. .....+.++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~--------------~~--~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSP--------------EL--ENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCH--------------HH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCCh--------------HH--HHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999999842211 11 11234566778999999999998
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.4e-40 Score=337.10 Aligned_cols=198 Identities=22% Similarity=0.391 Sum_probs=174.6
Q ss_pred CCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCcc-CC-CCCCccchhhhH
Q 004803 161 VKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCV 238 (729)
Q Consensus 161 ~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~-~~-~~~d~h~vA~lL 238 (729)
.+..+||+||..++.....||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|++|... +. ...|+|+||++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHH
Confidence 3467999999999988788999999999999999999999999999999999999999998532 21 247999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|+.+++.|||++.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 9999999999999999999999999999899999999855 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (729)
||+|+|++..+...+. + +...+.+|++||+||+.||++++.
T Consensus 167 ~P~L~~~~~~~~~~l~-------~-----------~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 167 WPTLMRPDFENREFLS-------T-----------TKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHSCCCCCSSCCSC-------C-----------CTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred cccccCCCCccHHHHH-------H-----------hHHHHHHHHHHHHhhHHHcCCCCC
Confidence 9999998743221111 1 123568999999999999998663
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=338.66 Aligned_cols=208 Identities=20% Similarity=0.281 Sum_probs=167.0
Q ss_pred ccCCCCCCCcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCC----CC
Q 004803 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA----DE 229 (729)
Q Consensus 155 ~k~k~~~~~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~----~~ 229 (729)
++++...+.++||+||..++.. +..||.+|.+|+.||+++|+ +|||||++|+...+++|++.|+.|...... ..
T Consensus 11 ~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~ 89 (229)
T 3iug_A 11 RENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQ 89 (229)
T ss_dssp -------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTT
T ss_pred cCCCCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCcccccccc
Confidence 4556666788999999998875 56799999999999999999 899999999999999999999998633322 24
Q ss_pred CccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCC
Q 004803 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (729)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (729)
|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.+++.|||
T Consensus 90 dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 168 (229)
T 3iug_A 90 DIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITNM 168 (229)
T ss_dssp CHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred chHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCC
Confidence 9999999999999999999999999999999999999999999999966 699999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
++.|||+||||+|||++..... ... ..+........+.+|++||+||+.||+++.
T Consensus 169 ~~~NLAivf~P~Ll~~~~~~~~------~~~------~~~~~~~~~~~~~vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 169 HAKNLAIVWAPNLLRSKQIESA------CFS------GTAAFMEVRIQSVVVEFILNHVDVLFSGRI 223 (229)
T ss_dssp CHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC---
T ss_pred ChHHHHHHHhccccCCCccccc------ccc------hHHHHHHHHHHHHHHHHHHHhHHHhCCCcH
Confidence 9999999999999998732110 000 011222344567899999999999999876
No 5
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=9.4e-40 Score=328.36 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=169.0
Q ss_pred CCCCCcccccchHHHhhhCC---CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccch
Q 004803 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~---~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~v 234 (729)
++.+.++||+||..++.+.. .||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|.. ++....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 34567899999999998643 799999999999999999999999999999999999999999963 33334689999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004803 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (729)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (729)
|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999997764 4578899999855 69999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 315 AivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HhhhcccccCCCCc---------------c----ccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998721 0 012334567889999999999998
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=8e-40 Score=336.58 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=154.7
Q ss_pred cccccchHHHhhhCC----CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHH-HHhcCC---ccCC--CCCCccc
Q 004803 164 LVVGRPILLALEDID----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHV 233 (729)
Q Consensus 164 ~vFG~pL~~ll~~~~----~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~-~ld~g~---~~~~--~~~d~h~ 233 (729)
+|||+||...+++.. .+|.+|.+|+.||+++|+.+|||||++|+..+|+++++ .++.|. ..+. ...|+|+
T Consensus 17 pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~ 96 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKT 96 (231)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHH
T ss_pred CccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHH
Confidence 389999988887533 36899999999999999999999999999999999987 578763 2332 2479999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccc
Q 004803 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (729)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~N 313 (729)
||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+.|++.|||++.|
T Consensus 97 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 175 (231)
T 1f7c_A 97 ITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN 175 (231)
T ss_dssp HHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999965 6999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 314 LAivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
||+||||+|+|++..+... +......+.+|++||+||+.||++.+
T Consensus 176 LAivf~P~Ll~~~~~~~~~------------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 176 LGVVFGPTLLRPQEETVAA------------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHSCC---CCSG------------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHhccccCCCCcccHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987422111 11234567899999999999999876
No 7
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=326.26 Aligned_cols=192 Identities=18% Similarity=0.333 Sum_probs=170.4
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-C-ccCC--CCCCccchhhh
Q 004803 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (729)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-~-~~~~--~~~d~h~vA~l 237 (729)
.++||+||..++.. +..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++| . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 46999999999976 467999999999999999999999999999999999999999985 3 3333 23699999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhh
Q 004803 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (729)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (729)
||.|||+||+||||.++|+.|+.+....+.++++..++.++ ..||++|+.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 318 fgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
|||+|+|++..+ . ++.+......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987311 1 1223345667899999999999998
No 8
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=338.19 Aligned_cols=196 Identities=23% Similarity=0.449 Sum_probs=174.4
Q ss_pred CCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCC-CCCCccchhhh
Q 004803 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDC 237 (729)
Q Consensus 160 ~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~-~~~d~h~vA~l 237 (729)
..++.+||+||..++...+.||.+|.+|+.||+++|+.+|||||++|+...|+.|++.|+.|.. .+. .++|+|+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred ccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHH
Confidence 3456899999999998878999999999999999999999999999999999999999999863 222 34699999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhh
Q 004803 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (729)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (729)
||.|||+||+||||+++|+.|+.+....+.++++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+||+.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 004803 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (729)
Q Consensus 318 fgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (729)
|||+||||...+. .++..+..++.+|++||+||+.||.+
T Consensus 207 f~P~Llrp~~~~~------------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 207 FWPTLMRPDFSTM------------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHCCCSSSS------------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred hcccccCCCCccH------------------HHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 9999999863211 11234456779999999999999986
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=1.1e-38 Score=330.43 Aligned_cols=197 Identities=24% Similarity=0.367 Sum_probs=169.1
Q ss_pred CCCCCcccccchHHHhhhCC---CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCCCCccch
Q 004803 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~---~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~~d~h~v 234 (729)
...+..+||++|..++.+.. .||.+|.+|+.||+++|+.+|||||++|+...++++++.|++|.. ++....|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45567899999999997643 799999999999999999999999999999999999999999963 33333599999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004803 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (729)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (729)
|++||.|||+||+||||.++|+.|+.+... +.++++..++.+| .+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999997765 4578899999855 69999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 315 AivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||++..
T Consensus 196 Aivf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 196 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhhcchhCCCCCc---------------c----ccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999998721 0 1123345677899999999999998764
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=1.7e-38 Score=323.58 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=158.1
Q ss_pred CcccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC-ccCCCCCCccchhhhH
Q 004803 163 SLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (729)
Q Consensus 163 ~~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~d~h~vA~lL 238 (729)
..+||+||..++++ ...||.+|.+|++||+++|+.+|||||++|+... ++|++.|++|. ......+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 45899999999985 3579999999999999999999999999999999 99999999984 2233567999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHhc--cCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~-~~~~~~ri~~l~~lIl~--~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (729)
|.|||+||+||||.++|+.|+.+.. ..+.++++..++.+| . +||+.|+.+|+||+.||++|+.|++.|||++.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999986 677789999999855 6 89999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 316 ivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
+||||+|||++..+ .. . ....+.+|++||+||+.||+..+
T Consensus 163 ivf~P~Ll~~~~~~--------------~~------~-~~~~~~vve~LI~~~~~iF~~~P 202 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------SD------N-TENLIKVIEILISTEWNERQPAP 202 (216)
T ss_dssp HHHHHHHHTCSSCC--------------HH------H-HHHHHHHHHHHHHTTC-------
T ss_pred HHHhhhcCCCCCCc--------------hh------h-hHHHHHHHHHHHhhhHHhcCCCC
Confidence 99999999987321 00 1 15678899999999999999875
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=319.40 Aligned_cols=209 Identities=22% Similarity=0.338 Sum_probs=167.1
Q ss_pred CCCcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcC-CccCCCCCCccchhhhH
Q 004803 161 VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCV 238 (729)
Q Consensus 161 ~~~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-~~~~~~~~d~h~vA~lL 238 (729)
..++|||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+...|++|++.++.+ ........|+|+||++|
T Consensus 16 ~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 95 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML 95 (228)
T ss_dssp CTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred CCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence 3467999999999875 567999999999999999999999999999999999999999875 34445668999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.+++.|+|++.|||+||
T Consensus 96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 174 (228)
T 3kuq_A 96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI-MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174 (228)
T ss_dssp HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHH
Confidence 9999999999999999999999999888889999999966 599999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCC--CCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004803 319 APLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~--~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~I 371 (729)
||+|||+....... .++..+ ++.........+....-+..+|.+||+||+.|
T Consensus 175 ~P~Ll~~~~~~~~s-~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 175 APSLFHLNTLKREN-SSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhcCCCCCCCCC-CCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999987542111 111100 00000011112333344678999999999875
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=306.41 Aligned_cols=190 Identities=17% Similarity=0.257 Sum_probs=165.0
Q ss_pred cchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCc-cCCCC-CCccchhhhHHHHhhh
Q 004803 168 RPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSAD-EDAHVIGDCVKHVLRE 244 (729)
Q Consensus 168 ~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~-~~~~~-~d~h~vA~lLK~fLRe 244 (729)
..|.+++.. +..||.+|.+|+.||+++|+.+|||||++|+..+|++|++.|++|.. ..... .|+|+||++||.|||+
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flre 83 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRN 83 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHh
Confidence 346666654 56799999999999999999999999999999999999999999853 32334 4999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccC
Q 004803 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (729)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (729)
||+||||.++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+++ +.|||++.|||+||||+|+|
T Consensus 84 LpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 84 LKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAV-GELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp SSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence 9999999999999999999999899999999866 699999999999999999999996 68999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 004803 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (729)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~ 374 (729)
++..+. .. .+.+..+...+.+|++||+||+.||+.
T Consensus 162 ~~~~~~------------~~---~~~~~~~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 162 HAVPNP------------DP---VTMLQDIKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp CSSSSC------------CH---HHHHHHHHHHHHHHHHHHHSCHHHHHG
T ss_pred CCCCCC------------CH---HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 863211 01 223445667889999999999999986
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=318.09 Aligned_cols=200 Identities=22% Similarity=0.294 Sum_probs=157.0
Q ss_pred CCCCCcccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccch
Q 004803 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVI 234 (729)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~v 234 (729)
.+.++++||+||..++.. .+.||.+|.+|+.||++ |+.+|||||++|+...+++|++.|+.|... ....|+|+|
T Consensus 58 ~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~v 135 (271)
T 3eap_A 58 TEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI 135 (271)
T ss_dssp ---CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cccccHHHH
Confidence 445678999999998753 34699999999999975 799999999999999999999999999654 346799999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004803 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (729)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (729)
|++||.|||+||+||||.++|+.|+.+.... .++++..++.+ +..||+.|+.+|+||+.||++|+.+++.|+|++.||
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~l-~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 213 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLL-SCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 9999999999999999999999999998874 46677888764 468999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 315 AivfgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
|+||||+|||++.... .+. .. ..........+|++||+||+.||..+.
T Consensus 214 Aivf~P~Ll~~~~~~~-~~~----------~~---~~~~~~~~~~vve~LI~~~~~IF~vp~ 261 (271)
T 3eap_A 214 AVIFAPNLLQTSEGHE-KMS----------SN---TEKKLRLQAAVVQTLIDYASDIGRVPD 261 (271)
T ss_dssp HHHHHHHHHTCCCCCT-TCC----------HH---HHHHHHHHHHHHHHHHHTGGGTTCCCH
T ss_pred HHHHHhHhccCCCCcc-chh----------hh---HHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 9999999999873211 111 10 112234567899999999999997654
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=4.8e-35 Score=329.60 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=170.1
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCC--ccCC--CCCCccchhhh
Q 004803 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (729)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~--~~~~--~~~d~h~vA~l 237 (729)
.++||++|..++.. ...||.+|.+|+.||+++|+.+|||||++|+...|++|++.||.+. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 57999999999975 5689999999999999999999999999999999999999999853 2332 23699999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhh
Q 004803 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (729)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (729)
||.|||+||+||||.++|+.|+.+....+.++++..++.+| ..||++|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 004803 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (729)
Q Consensus 318 fgP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF 372 (729)
|||+||+++..+.. +.+..+...+.+|++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccHH-----------------HHHHHHHHHHHHHHHHHhchhhcC
Confidence 99999998743211 011223456789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=306.79 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhH
Q 004803 162 KSLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (729)
Q Consensus 162 ~~~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (729)
..++||+||..++++ .+.||.+|.+|+.||+++|+.+|||||++|+. +++ .+........|+|+||++|
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lL 90 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGI 90 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHH
Confidence 356999999999883 35799999999999999999999999999998 333 2222223457999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhc
Q 004803 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (729)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (729)
|.|||+||+||||.++|+.|+.+....+..+++. . ++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||
T Consensus 91 K~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 166 (214)
T 2xs6_A 91 KSFLLALPAPLVTPEASAEARRALREAAGPVGPA---L-EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATF 166 (214)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---G-STTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---H-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHH
Confidence 9999999999999999999999998766554444 3 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004803 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (729)
Q Consensus 319 gP~Llr~~~~~~~~le~~~~~~g~~~~~~~~a~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (729)
||+|||++..... .... + ...+.+..+...+.+|++||+| .||+.++
T Consensus 167 ~P~Ll~~~~~~~~---~~~~--~----~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 167 GPLLLRAPPPPSS---PPPG--G----APDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred hhhhcCCcccccc---cccc--c----chhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999999842100 0000 0 0011123345678999999976 4787654
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=3e-31 Score=290.07 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=129.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHHhcCCccCCCCCCccchhhhHHHHhhhCCCCCCChhhHHHH
Q 004803 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (729)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~ 258 (729)
.||.+|.+|+.||+++|+.+|||||++|+..+++.|++.|+.|..... ..|+|+||++||.|||+||+||||.++|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999964433 3499999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhccccccCCCC
Q 004803 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (729)
Q Consensus 259 l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (729)
+.+... ...++.+| ..||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||++.
T Consensus 277 ~~~~~~------~~~~~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYD------PRICRQVI-SQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTC------HHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhh------HHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 998764 13466645 599999999999999999999999999999999999999999999984
No 17
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.71 E-value=2.9e-17 Score=152.25 Aligned_cols=104 Identities=27% Similarity=0.422 Sum_probs=75.8
Q ss_pred CCCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEe----CCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcc
Q 004803 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFK----NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYK----d~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~ 89 (729)
.+.++.++|||| |+|. .++.|+||||||+++.|+||+ ++.+..|. ..+.|.++.+..+........+++
T Consensus 4 ~p~n~~~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~----G~I~L~g~tV~~~~~~~~~~~~k~ 77 (126)
T 1wi1_A 4 GSSGMKHSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQ----ELLQLDGYTVDYTDPQPGLEGGRA 77 (126)
T ss_dssp CCCCEEEEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCS----EEEECSSCEEEECCCCSSCCSCSS
T ss_pred CCCCCceeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCc----eEEECCCcEEEEecCCcccccCce
Confidence 344789999777 6665 568999999999999999999 77665533 244555555443211111134668
Q ss_pred eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+|.+... +++|+|+|++++||+.||.||..|+.++
T Consensus 78 ~F~~v~~---~~ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 78 FFNAVKE---GDTVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp EEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred EEEEecC---CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 8865543 6789999999999999999999999644
No 18
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.70 E-value=1.1e-16 Score=153.66 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=73.0
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee---ccCCcceEEEe
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVLF 94 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~---~~~Kk~~fvit 94 (729)
.++|+|||+ |+|...+.|++|||||+++.|+||+++.+..+ .+.|+|..++.+.. ...++++|.|.
T Consensus 17 pv~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~---------~g~I~L~~~~~~~~~~~~~~~~~~F~I~ 85 (149)
T 1x1f_A 17 PLYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSIIY---------VDKLDIVDLTCLTEQNSTEKNCAKFTLV 85 (149)
T ss_dssp CEEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSSC---------SEECCCSSCCEEEECCCTTSCCCEEEEE
T ss_pred CccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCcccc---------CcEEECCCceEEeeccCCCCcCcEEEEE
Confidence 399999665 78878899999999999999999999877653 33455555443311 12335677765
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. .++|+|+|+|.+|+++||.||+.++.
T Consensus 86 t~---~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 86 LP---KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp CS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cC---CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 43 68999999999999999999999986
No 19
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.69 E-value=1.1e-16 Score=150.19 Aligned_cols=103 Identities=26% Similarity=0.386 Sum_probs=74.6
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVL 93 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-~~Kk~~fvi 93 (729)
.+..|+++|||+ |+| ..+.|++|||||+++.|+||+++.+.. +++.|.|..+..+... ..++++|.|
T Consensus 4 ~~~~v~k~GwL~--K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~i 71 (130)
T 1v88_A 4 GSSGIVMADWLK--IRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQ---------WVGTVLLNACEIIERPSKKDGFCFKL 71 (130)
T ss_dssp SSSSCCEEEEEE--ECC-SSSSCEEEEEEEETTEEEEESCSSSCC---------CCEEEECSSCEECCCCTTTSSCEEEE
T ss_pred CCCceEEEeEEE--EeC-CCCCceEEEEEEECCEEEEECCCCCCC---------ceEEEEcCCCEEEECCCCCCCeEEEE
Confidence 356789999665 677 788999999999999999999987654 2333444443322111 234488887
Q ss_pred ecCCCc---------------------ceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 94 FPDGRD---------------------GRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 94 t~~~~~---------------------grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
...... .++|+|+|+|++|+++||.||+.|+...|.
T Consensus 72 ~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~~ 128 (130)
T 1v88_A 72 FHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128 (130)
T ss_dssp ECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTTT
T ss_pred EcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 642211 245999999999999999999999976554
No 20
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.65 E-value=3.6e-16 Score=140.55 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=75.3
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTV 92 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--~~Kk~~fv 92 (729)
.+..++++|||+ |+|...+.|++|||||+++.|+||+++.+..| .+.|.|..+..+... ..++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~---------~~~i~L~~~~~~~~~~~~~~~~~F~ 72 (109)
T 1wgq_A 4 GSSGSTMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---------LESQPLLGFTVTLVKDENSESKVFQ 72 (109)
T ss_dssp CCCSCSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSSC---------SEEEECSSEEEEECCCSSCSSSEEE
T ss_pred CCCCCeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCcc---------CceEECCCCEEEECCCCCCCCcEEE
Confidence 345678999776 66777889999999999999999999876542 233444443332222 23447887
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
|.. .++++|+|+|+|++|+.+|+.+|+.++...|+
T Consensus 73 i~~--~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~~~ 107 (109)
T 1wgq_A 73 LLH--KGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107 (109)
T ss_dssp EEE--TTEEEEEEECSSHHHHHHHHHHHHHHHSCCCC
T ss_pred EEe--CCCeEEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 764 24688999999999999999999999875543
No 21
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=138.27 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=70.2
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (729)
|.|+|||+ |+|...++|++|||||+++.|+||+++.+.... +.+.|.+..+..+ .....+++|.+...
T Consensus 1 V~k~G~L~--K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~-------~~~~i~l~~~~~~-~~~~~~~~F~i~~~-- 68 (94)
T 2rsg_A 1 VERCGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-------CRGSICLSKAVIT-PHDFDECRFDISVN-- 68 (94)
T ss_dssp CCEEEEEE--EESSSTTCEEEEEEEEETTEEEEESSTTGGGTC-------CSEEEETTTCEEE-ECSSCSSEEEEEET--
T ss_pred CCEEEEEE--EeCCCCCCceEEEEEEECCEEEEEEeccccccc-------ceeeEecceeeee-cCcccceeEEEEeC--
Confidence 57999666 778888999999999999999999987654321 2334555554332 33445567777653
Q ss_pred cceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 99 DGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 99 ~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
+++|+|+|+|++|+++|+.||+.|
T Consensus 69 -~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 69 -DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp -TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred -CeEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999976
No 22
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.65 E-value=3.8e-16 Score=141.60 Aligned_cols=102 Identities=25% Similarity=0.446 Sum_probs=76.1
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEe--CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee--------
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------- 83 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~--g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-------- 83 (729)
.....++++|||+ |+|...+.|++|||||+ ++.|+||+++.+..|. +.|.|..+..+..
T Consensus 3 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~---------g~i~L~~~~~v~~~~~~~~~~ 71 (117)
T 1v5u_A 3 SGSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECK---------GVIDLAEVEAVAPGTPTIGAP 71 (117)
T ss_dssp SSCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCC---------CEEEGGGEEEEECCCCCTTSC
T ss_pred CCcCCccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCccc---------eEEEccCcEEEeecCcccccc
Confidence 3456789999666 77777889999999999 8899999998765533 3344444333221
Q ss_pred -ccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 84 -~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
...++++|.|.. .+++|+|+|+|.+|+++|+.+|+.++...|+
T Consensus 72 ~~~~~~~~F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 72 KTVDEKAFFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp SSSCTTTCEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCCCeEEEEEC---CCceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 123447787754 3799999999999999999999999876664
No 23
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.64 E-value=7.5e-16 Score=141.55 Aligned_cols=100 Identities=29% Similarity=0.424 Sum_probs=76.1
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
.|+++|||+++..|....+|++|||||++.+|+|||+..+.. +...++|.++.+....+- ...++++|.+.+..
T Consensus 11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke----~~G~IpL~~~~vr~v~~~--~~~rk~~F~l~~~d 84 (125)
T 1dyn_A 11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTE 84 (125)
T ss_dssp CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC----EEEEEECTTEEEEECCSC--SSSSCEEEEEEETT
T ss_pred ceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc----cceEEECCCceEeccCCC--CCCCceEEEEECCC
Confidence 399999776433343333599999999999999999988765 445778888888764431 12577888877532
Q ss_pred -C----cceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 -R----DGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 -~----~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
+ +.++|.|+|+|.+|+++|+++|.+|
T Consensus 85 ~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 85 QRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp SSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 2 4569999999999999999999665
No 24
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=139.28 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=75.1
Q ss_pred CCCCCCceEEEeeeeeeecCCCC-CCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004803 12 RPGASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (729)
Q Consensus 12 ~~~~~~~v~KeG~L~l~Kkg~~~-k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~ 90 (729)
++.....++++|||+ |++... +.|++|||||+++.|+||+++.... .++|.+..+. +.+..+++++
T Consensus 3 ~~~~~~~~~~~G~L~--K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~----------~~~i~l~~~~-v~~~~~~~~~ 69 (114)
T 2da0_A 3 SGSSGYGSEKKGYLL--KKSDGIRKVWQRRKCSVKNGILTISHATSNRQ----------PAKLNLLTCQ-VKPNAEDKKS 69 (114)
T ss_dssp CSCCCCCSCEEEEEE--EECSSSCCCEEEEEEEEETTEEEECCSSCCSC----------CEEEETTTSE-EEECSSSSSC
T ss_pred CCCCCCCccEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEEcCCCCCC----------CCEEEeeeeE-EEECCCCCCE
Confidence 345566789999776 555544 8999999999999999999965422 2334444433 2233456678
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
|.|... +++|+|+|+|++|+.+|+.||+.++..+-
T Consensus 70 F~I~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 70 FDLISH---NRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp EEEEET---TEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 877643 79999999999999999999999997543
No 25
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=1.3e-15 Score=137.88 Aligned_cols=104 Identities=23% Similarity=0.409 Sum_probs=77.0
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcce
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKLL 90 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~----~~~Kk~~ 90 (729)
....++++|||+ |+|...+.|++|||||+++.|+||+++.+..| .+.|.|..+..+.. ...++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~~ 72 (118)
T 1v89_A 4 GSSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---------QGCMYLPGCTIKEIATNPEEAGKFV 72 (118)
T ss_dssp SSSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCSC---------SEEECSTTEEEEEECCCSSCCCCCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCCc---------eEEEECCCCEEEEcCcCcccCCcce
Confidence 345789999666 67777889999999999999999999876542 23344443332211 2334678
Q ss_pred EEEecCC-----CcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 91 TVLFPDG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 91 fvit~~~-----~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
|.|.+.. ..+++|+|+|+|.+|+++|+.+|+.++...|+
T Consensus 73 f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 73 FEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp EEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred EEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 8776521 24799999999999999999999999986664
No 26
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.64 E-value=6.3e-16 Score=144.42 Aligned_cols=112 Identities=25% Similarity=0.426 Sum_probs=73.5
Q ss_pred CCCCceEEEeeeeeee---cCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCC--CceeeeeeCcEEcCCCcceee--cc
Q 004803 14 GASNTVFKSGPLFISS---KGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVVV--RE 85 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~K---kg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~--g~~~~i~L~~I~L~~~~sv~~--~~ 85 (729)
..+..+.|+|||++++ +|. .+++|++|||||+++.|+||+++....... +.....+.+.|+|..+..... ..
T Consensus 7 ~~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~ 86 (129)
T 2p0d_A 7 VGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLS 86 (129)
T ss_dssp --CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSC
T ss_pred CCCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCC
Confidence 3456899999887532 232 248999999999999999999985321100 000111344455655543222 23
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.++++|.|.+ .++++|+|+|++++|+++|+.+|+.+|.+.
T Consensus 87 kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 87 SRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp SSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 4557787753 357899999999999999999999999754
No 27
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=1.2e-15 Score=137.82 Aligned_cols=98 Identities=18% Similarity=0.311 Sum_probs=75.1
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEEE
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~---~~~~Kk~~fvi 93 (729)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+. ....++++|.|
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~~~~~~~~~~~~~~F~i 71 (113)
T 1pls_A 3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---------PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71 (113)
T ss_dssp CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSS---------CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred CCCcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCCC---------cceEEEcCCCEEEEecCCCCCCccEEEE
Confidence 4688999665 7777788999999999999999999986544 23345555554432 12345578877
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
... ++++|+|+|+|.+|+++|+.+|+.++...
T Consensus 72 ~~~--~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 72 TTT--KQQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EET--TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EcC--CCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 642 36999999999999999999999999754
No 28
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.63 E-value=2.7e-15 Score=134.18 Aligned_cols=97 Identities=28% Similarity=0.461 Sum_probs=71.6
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCC--eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------c
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------E 85 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~--~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-------~ 85 (729)
....++++|||+ |+|...+.|++|||||+++ .|+||+++.+..| .+.|.|..+...... .
T Consensus 3 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~ 71 (109)
T 2i5f_A 3 FTGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---------LGAIHLRGCVVTSVESNSNGRKS 71 (109)
T ss_dssp CCCCEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSSC---------SEEEECTTCEEEEECC-------
T ss_pred ccCceeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCc---------cEEEECCCCEEEEccCCcccccC
Confidence 356899999666 6777788999999999986 9999998765442 333555543322111 1
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
.++++|.|... ++++|+|+|+|.+|+++|+.+|+.++
T Consensus 72 ~~~~~F~i~~~--~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 72 EEENLFEIITA--DEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp -CCSEEEEECT--TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeC--CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 25677877653 46789999999999999999999886
No 29
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.63 E-value=1.9e-15 Score=137.11 Aligned_cols=98 Identities=24% Similarity=0.355 Sum_probs=76.3
Q ss_pred CCCCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004803 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fv 92 (729)
.....++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.... +++|.
T Consensus 3 ~~~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~--~~~F~ 69 (115)
T 2cod_A 3 SGSSGKVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRVQG--DNKFE 69 (115)
T ss_dssp CCCSCCCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEEET--TTEEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------cCCEEECCcceEEEeCC--CCEEE
Confidence 3456789999666 6666 678999999999999999999987654 34556666655443332 56777
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
|.. .+++|+|+|++.+|+.+|+.+|+.++...
T Consensus 70 i~~---~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~ 101 (115)
T 2cod_A 70 VVT---TQRTFVFRVEKEEERNDWISILLNALKSQ 101 (115)
T ss_dssp EEE---SSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 753 37999999999999999999999999643
No 30
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=145.81 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=74.2
Q ss_pred CCCCceEEEeeeeeeecC---CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-------
Q 004803 14 GASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------- 83 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg---~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~------- 83 (729)
.-..+++++|||+++.++ ...++|++|||||+++.|+||+++.+... +.+.|.|..+..+..
T Consensus 10 ~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~--------~~G~I~L~~~~~v~~~~~~~~~ 81 (164)
T 2lul_A 10 HMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKY--------RKGFIDVSKIKCVEIVKNDDGV 81 (164)
T ss_dssp CCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCC--------CCCEEEGGGCCEEEECCCCSSS
T ss_pred cCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccc--------cccEEEEeeeEEEEeccccccC
Confidence 345689999988855433 23467999999999999999998755432 122344443332211
Q ss_pred -ccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 84 -~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
....+++|.|... .|+|||+|+|++|+++||.||++++...++
T Consensus 82 ~~~~~~~~f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~ 125 (164)
T 2lul_A 82 IPCQNKYPFQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125 (164)
T ss_dssp CCSSSCSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTCSC
T ss_pred cccccceeEEEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHChh
Confidence 1234466766543 699999999999999999999999986654
No 31
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.62 E-value=1.7e-15 Score=141.23 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCCceEEEeeeeeeecC-CCCCCcEEEEEEEe---CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-----c
Q 004803 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILT---RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----R 84 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg-~~~k~WkkRWfVL~---g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-----~ 84 (729)
.......++|||+ |+| ...+.|+||||||+ +..|+||+++.+. +.. ..+++.|.|..+..|.. .
T Consensus 10 ~~~~~~~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~-~~~----~~~~G~I~L~~~~~V~~~~~~~~ 82 (126)
T 1v5p_A 10 YVDRQNRICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQNL-AVG----AGAVGSLQLTYISKVSIATPKQK 82 (126)
T ss_dssp CCCCCCCEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTTS-CTT----CCCSEEEETTTCCEEEECCTTTS
T ss_pred eecCCCceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCCC-CCC----ceeeEEEECCCccEEecCCcccC
Confidence 4445556899665 666 56889999999999 5677788884221 111 11455566666444432 1
Q ss_pred cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
..+++||+|.. ..|+|||+|+|++|+++||.||+.++...|+
T Consensus 83 ~~~~~~F~i~t---~~r~y~l~A~s~~e~~~Wi~al~~a~~~~~~ 124 (126)
T 1v5p_A 83 PKTPFCFVINA---LSQRYFLQANDQKDLKDWVEALNQASKSGPS 124 (126)
T ss_dssp CSCSSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHTTTTSSS
T ss_pred CCCCEEEEEEC---CCEEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 23457887754 2699999999999999999999998765443
No 32
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.62 E-value=1.5e-16 Score=147.52 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=71.3
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC----CCCCCCceeeeeeCcEEcCCCcceeec---cCC
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS----ALPQRGGEVNLTLGGIDLNNSGSVVVR---EDK 87 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~----~~p~~g~~~~i~L~~I~L~~~~sv~~~---~~K 87 (729)
.-..+.|+|||+ |+|...+.|++|||||+++.|+||++... ..|.+. .+.+.|+|..+...... ..+
T Consensus 8 ~~~~~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~----~~~G~I~L~~~~v~~~~~~~~~k 81 (124)
T 2w2x_D 8 KKDEHKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGS----LCRGILDLNTYNVVKAPQGKNQK 81 (124)
T ss_dssp -----CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCC----SCSEEEEGGGEEEEECTTCBTTB
T ss_pred hhhhcceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccCC----ccccEEECCCCEEEEccCCcCCC
Confidence 345789999666 67777889999999999999999998532 122211 12334555544432222 346
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+++|.|.....+.++|+|+|+|.+|+.+||.||+.++..+
T Consensus 82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 6788886644345789999999999999999999998643
No 33
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=139.17 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=75.9
Q ss_pred CCCceEEEeeeeeeecCC--CCCCcEEEEEEEeCC--eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004803 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~--~~k~WkkRWfVL~g~--~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~ 90 (729)
....+.++|||+ |+|. ..+.|++|||||+++ .|+||+++.+.. +.+.|+|..+..+.....++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~~~~~~~~~~~ 72 (119)
T 2dhk_A 4 GSSGKKLCGYLS--KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---------PLDSIDLSSAVFDCKADAEEGI 72 (119)
T ss_dssp SCSCCCCEEEEE--ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS---------CSEEEEGGGCEEEECTTGGGCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc---------cccEEECCCCEEEecCCCCCCE
Confidence 345678999666 6664 578999999999998 999999987654 3455666665554333345577
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
|.|... +|+|+|+|++.+|+++|+.+|+.++..
T Consensus 73 F~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 73 FEIKTP---SRVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp EEEECS---SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 877653 799999999999999999999999853
No 34
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.62 E-value=2.9e-15 Score=137.53 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=75.7
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEec
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFP 95 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~~Kk~~fvit~ 95 (729)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...++++|.|..
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 3 FNPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp SSCSEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CCCceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCC---------cceEEECCceEEEEccCCCCCceEEEec
Confidence 4678999665 6777788999999999999999999876644 233455555433222 234567887764
Q ss_pred CCC-------------------cceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 96 DGR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 96 ~~~-------------------~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
... ..++|+|+|+|.+|+++|+.+|+.++...|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 124 (127)
T 1fgy_A 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF 124 (127)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCTT
T ss_pred CCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCCc
Confidence 321 2479999999999999999999999986653
No 35
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.62 E-value=1.9e-15 Score=138.60 Aligned_cols=100 Identities=24% Similarity=0.399 Sum_probs=75.7
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCc
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKK 88 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-----~~~Kk 88 (729)
.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...++
T Consensus 9 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~~~~~~~~~ 77 (125)
T 1eaz_A 9 PQDSAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMRD 77 (125)
T ss_dssp ---CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTCS
T ss_pred CCCCCccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc---------ceeEEEcccceEEeeccccccCCcC
Confidence 4467899999666 6677788999999999999999999987654 234455555443322 12456
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
++|.|... +++|+|+|+|++|+.+|+.+|+.++...
T Consensus 78 ~~F~i~~~---~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 78 NLFEIVTT---SRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeC---CcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 78887653 7999999999999999999999999744
No 36
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.5e-15 Score=140.13 Aligned_cols=107 Identities=24% Similarity=0.424 Sum_probs=72.7
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEE-eCCeEEEEeCCCCCCCCCCceeeeeeC--cEEcCC-Ccceee--ccCC
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLG--GIDLNN-SGSVVV--REDK 87 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL-~g~~L~yYKd~~~~~p~~g~~~~i~L~--~I~L~~-~~sv~~--~~~K 87 (729)
+....++++|||+ |+|...+.|++||||| +++.|+||+++.+..+.+ .+.+... .|.+.. |..+.. ...+
T Consensus 3 ~~~~~v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g--~i~l~~~~~~i~~~~~~~~v~~~~~~~~ 78 (130)
T 2d9v_A 3 SGSSGLVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEED--RVVIHFNVRDIKVGQECQDVQPPEGRSR 78 (130)
T ss_dssp TSCCCEEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEE--EEECTTTEEEEEEGGGCSSCCCCSSCCT
T ss_pred CCCCceeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCCcCc--eEecccceeEEeccccccccCCCCCCCc
Confidence 3456799999666 6677788999999999 899999999987653221 1111111 111110 111111 1235
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
+++|.|.. .++|+|+|+|+|++|+++|+.||+.++..
T Consensus 79 ~~~F~I~~--~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 79 DGLLTVNL--REGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp TTEEEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 57887764 23689999999999999999999999863
No 37
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.62 E-value=2.7e-15 Score=136.65 Aligned_cols=95 Identities=21% Similarity=0.374 Sum_probs=69.4
Q ss_pred EEEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcce----eeccCCcceEE
Q 004803 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV----VVREDKKLLTV 92 (729)
Q Consensus 20 ~KeG~L~l~Kkg~---~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv----~~~~~Kk~~fv 92 (729)
.|+|||+++ .|. ..+.|++|||||+++.|+||+++.+..| .+.|+|...... .....++++|.
T Consensus 1 tkeG~L~kK-~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p---------~~~i~l~~~~~~~~~~~~~~~r~~~F~ 70 (112)
T 3cxb_B 1 TKEGMLHYK-AGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP---------LLSVNMGGEQCGGCRRANTTDRPHAFQ 70 (112)
T ss_dssp CEEEEEEEC-CSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSC---------SEEEETTC-CEEEEEECCCSSCTTEEE
T ss_pred CceEEEEEe-CCCCCCCCCCceEEEEEEECCEEEEECCCCCCCc---------cceEEecCCEEEeeeccCCCCCCeEEE
Confidence 389977633 232 5789999999999999999999876543 233555433221 12235668888
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
|.. .++++|+|+|+|++++++||.+|+.++..
T Consensus 71 l~~--~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 71 VIL--SDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp EEE--TTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEc--CCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 764 24789999999999999999999999863
No 38
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.1e-15 Score=133.92 Aligned_cols=99 Identities=28% Similarity=0.444 Sum_probs=72.9
Q ss_pred CCCCceEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCc
Q 004803 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg-~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~----~~~Kk 88 (729)
.+...++++|||+ |+| ...+.|++|||||+++.|+||+++.+..| .+.|.|..+..... ...++
T Consensus 17 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~ 85 (122)
T 2yry_A 17 NPNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI---------LGSIPLLSFRVAAVQPSDNISRK 85 (122)
T ss_dssp CTTCCEEEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCSC---------CEEEESTTCCCEECCTTCSCSSS
T ss_pred CCCCCccEEEEEE--EECCCCCCCcEEEEEEEeCCEEEEECCCCCCCc---------ccEEEcCCCEEEEcCccccCCcc
Confidence 3455799999777 554 35789999999999999999999876542 33344444332111 12456
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
++|.|.. .++++|+|+|+|.+|+++|+.+|+.++.
T Consensus 86 ~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 86 HTFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 7888753 2369999999999999999999999874
No 39
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=135.57 Aligned_cols=99 Identities=24% Similarity=0.424 Sum_probs=77.0
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLT 91 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~---~~Kk~~f 91 (729)
....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..++.+... ..++++|
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~~F 72 (115)
T 2dn6_A 4 GSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKD---------KKGDILLDENCCVESLPDKDGKKCLF 72 (115)
T ss_dssp CCCSCSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCSS---------EEEEECCCTTCEEEEECCCTTCCSEE
T ss_pred CCCCceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCcc---------cCcEEEecCcEEEEECCCCCCCeeEE
Confidence 456789999666 7777788999999999999999999876544 4455666654443221 3455788
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.|... +++|+|+|++.+|+++|+.+|+.++...
T Consensus 73 ~i~~~---~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 73 LVKCF---DKTFEISASDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp EEECS---SCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeC---CCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 87653 6899999999999999999999999743
No 40
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=5.1e-15 Score=136.72 Aligned_cols=99 Identities=24% Similarity=0.410 Sum_probs=73.2
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEe--CCeEEEEeCC-CCCCCCCCceeeeeeCcEEcCCCcceeeccC----
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKND-PSALPQRGGEVNLTLGGIDLNNSGSVVVRED---- 86 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~--g~~L~yYKd~-~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~---- 86 (729)
.....++++|||+ |+|...+.|++|||||+ ++.|+||+++ .... +.+.|.|..+........
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~---------~~g~i~L~~~~v~~~~~~~~p~ 81 (129)
T 1x1g_A 13 ELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR---------PVGGFSLRGSLVSALEDNGVPT 81 (129)
T ss_dssp TTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCSS---------CSCCEESTTCCCEECCSSSSCS
T ss_pred ccCCCEEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCc---------cceEEECcCCEEEEeCCCCCcc
Confidence 4567899999666 67777899999999999 4799999986 3333 344455555433211111
Q ss_pred ------CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 87 ------KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 87 ------Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
++++|.|.. .++++|+|+|+|.+|+++|+.+|+.++.
T Consensus 82 ~~~~~~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 82 GVKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp SCSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred cccCCCCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 457787764 2357899999999999999999999985
No 41
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=136.10 Aligned_cols=99 Identities=23% Similarity=0.434 Sum_probs=73.3
Q ss_pred CCCCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCc
Q 004803 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~----~~~Kk 88 (729)
.+...++++|||+ |++. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++
T Consensus 16 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 84 (128)
T 2dkp_A 16 NPNAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG---------ILGSILLPSFQIALLTSEDHINRK 84 (128)
T ss_dssp CTTSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------EEEEECGGGSEEEECCGGGCCSSC
T ss_pred CCCCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCcc---------cceEEEcCceEEEEcCCcccCCCC
Confidence 3566789999776 5554 578899999999999999999886654 333444443322111 12456
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
++|.|... ++++|+|+|+|++|+++|+.+|+.|+.
T Consensus 85 ~~F~i~~~--~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 85 YAFKAAHP--NMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SEEEEECS--SSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred eEEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 78887642 369999999999999999999999875
No 42
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.61 E-value=1.3e-15 Score=140.25 Aligned_cols=108 Identities=19% Similarity=0.303 Sum_probs=79.8
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeC-CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g-~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
....++++|||+ |+|...+.|++|||||++ +.|+||++..+..+ ...++|..+.+..+........++++|.|
T Consensus 4 ~~~~~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~----~g~i~L~~~~~~~~~~~~~~~~~~~~F~I 77 (125)
T 1unq_A 4 SDVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVD----QREAPLNNFSVAQCQLMKTERPRPNTFII 77 (125)
T ss_dssp GGGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHH----HHTSCSEEEECTTCEEEEECSSSTTEEEE
T ss_pred CCCCeeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCC----CceeEccceeEEeeeecccccCCCCEEEE
Confidence 346799999665 777778999999999996 69999999765432 22345666666554332233456678877
Q ss_pred ec-CCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 94 FP-DGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 94 t~-~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
.. ....+++|+|+|+|.+|+.+|+.||+.++...+
T Consensus 78 ~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 78 RCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp EEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 53 223478999999999999999999999997543
No 43
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.60 E-value=7.1e-15 Score=135.90 Aligned_cols=101 Identities=26% Similarity=0.410 Sum_probs=74.9
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCC--eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR------- 84 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~--~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~------- 84 (729)
.....++++|||+ |+|...+.|++|||||+++ .|+||+++.+.. +.+.|.|..+..+...
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~ 81 (129)
T 1x05_A 13 EFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRK 81 (129)
T ss_dssp TTCSEEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCSS---------CSEEEECTTCEEEECCCCCCSSS
T ss_pred cccCCceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCc---------ceeEEEccCCEEEEccCCccccc
Confidence 4567899999666 7777788999999999976 899999876544 2333555544322111
Q ss_pred cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
..++++|.|... ++++|+|+|++.+|+++|+.+|+.++...
T Consensus 82 ~~~~~~F~i~~~--~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 82 SEEENLFEIITA--DEVHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp CSSCSEEEEECT--TCCCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred cCCCeEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 125678877653 36789999999999999999999998743
No 44
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.60 E-value=4e-15 Score=137.06 Aligned_cols=99 Identities=31% Similarity=0.417 Sum_probs=77.2
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceE
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLT 91 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--~~Kk~~f 91 (729)
.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+... ..++++|
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~F 81 (126)
T 1fao_A 13 TAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNCF 81 (126)
T ss_dssp --CCTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCCC---------ceeEEEccceEEEEecccCCCCCEE
Confidence 4566789999666 6777788999999999999999999887654 3445666666544332 3455788
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.|... +++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 82 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 82 CLVFP---FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEEET---TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 87653 799999999999999999999999975
No 45
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.59 E-value=8.6e-17 Score=168.16 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=74.4
Q ss_pred CCCceEEEeeeee------eecCCC----CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec
Q 004803 15 ASNTVFKSGPLFI------SSKGIG----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR 84 (729)
Q Consensus 15 ~~~~v~KeG~L~l------~Kkg~~----~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~ 84 (729)
....++|+|||++ .|+|.. +++|++|||||+++.|+||+++....... ...+.+.|.|..+......
T Consensus 7 ~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~---~~~p~g~I~L~~~~v~~~~ 83 (263)
T 3a8p_A 7 EQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQ---NSAPRCALFAEDSIVQSVP 83 (263)
T ss_dssp ---CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------CCCSEEEECTTCEEEECT
T ss_pred cCCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccccccc---ccCccceEEcCCcEEEECC
Confidence 3467999998883 245544 78999999999999999999864211000 0113344555544332111
Q ss_pred --cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 85 --~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
..++++|.|.. .++++|+|+|+|.+|+++|+.+|+.++...|
T Consensus 84 ~~~kk~~~F~I~t--~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 84 EHPKKEHVFCLSN--SCGDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp TCSSCSSEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 24568888764 2489999999999999999999999997654
No 46
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.59 E-value=7.7e-15 Score=130.48 Aligned_cols=98 Identities=22% Similarity=0.408 Sum_probs=72.1
Q ss_pred ceEEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCcce
Q 004803 18 TVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKLL 90 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~--~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-----~~~Kk~~ 90 (729)
.++++|||+++.++. ..+.|++|||||+++.|+||+++.+..| .+.|.|..+..+.. ...++++
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~~~ 72 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP---------KGTFLIKGYSVRMAPHLRRDSKKESC 72 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSC---------SEEEECTTCEEEECGGGCSSGGGGGE
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCC---------CEEEEecceEEEeCCccccccCCcce
Confidence 589999887554432 2388999999999999999999876542 33345544443221 2234578
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
|.|... ++++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 73 F~i~~~--~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 73 FELTSQ--DRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp EEEECS--SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcC--CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 877642 3599999999999999999999999863
No 47
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.58 E-value=1.1e-14 Score=133.20 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=72.6
Q ss_pred CCCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
+...++++|||+ |+|. ..+.|++|||||+++.|+||+++.+..+. ..+.|.++.+...... ....++++|.+
T Consensus 7 p~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~----g~i~l~~~~v~~~~~~-~~~~~~~~f~i 79 (123)
T 1upq_A 7 PNLPVHIRGWLH--KQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVL----GSVLLPSYNIRPDGPG-APRGRRFTFTA 79 (123)
T ss_dssp TTSCEEEEEEEE--EECSSSSCCEEEEEEEEETTEEEEESSTTCCSCC----EEEEGGGCEEEECCSS-CTTSSSSEEEE
T ss_pred CCCCceEEEEEE--eeCCCCCCCceeEEEEEeCCEEEEECCCCCcccc----eEEECCCCEEEECCCC-ccCCCcEEEEE
Confidence 345699999777 5553 57899999999999999999998765432 2333444333221110 11235677877
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. .++++|+|+|+|.+|+.+|+.+|+.++.
T Consensus 80 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 80 EH--PGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp EC--TTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EC--CCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 54 2359999999999999999999999986
No 48
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=137.32 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=74.3
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEe--CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~--g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fv 92 (729)
....+.++|||+ |+|...+.|++|||||+ ++.|+||+++.+... . +.+.|.|..+. +.....++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~--~-----~~g~I~L~~~~-v~~~~~~~~~F~ 73 (120)
T 2d9x_A 4 GSSGENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQ--K-----PRGTLQLAGAV-ISPSDEDSHTFT 73 (120)
T ss_dssp CCSCCCCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSS--C-----CSEEEECTTCC-EECCSSSSSCEE
T ss_pred CCCCCcEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCC--C-----ccceEEcceEE-EEecCCCCCEEE
Confidence 344678999666 66667789999999999 479999998765311 1 33446665544 333345567887
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
|... ++++|+|+|+|.+|+++|+.+|+.++...
T Consensus 74 i~~~--~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 74 VNAA--SGEQYKLRATDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp ECCS--SSCCEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEcC--CCCEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 7642 36999999999999999999999998743
No 49
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.58 E-value=3.7e-15 Score=145.79 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=69.9
Q ss_pred ceEEEeeeeeeecC---CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cC----C
Q 004803 18 TVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---ED----K 87 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg---~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~---~~----K 87 (729)
.|+|+|||+++.++ ..++.||+|||||+++.|+||++..+... ...+.+.|.|..+..+... +. +
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~-----~~~~~G~I~L~~~~~ve~~~~~~~~~~~~ 76 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGR-----RGSKKGSIDVEKITCVETVVPEKNPPPER 76 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTE-----EEEEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCC-----CCceeeEEECcceEEEEeccCCCCcchhc
Confidence 57899977754333 23578999999999999999998421100 1124445555544332111 11 1
Q ss_pred c---------------------ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 88 K---------------------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 88 k---------------------~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
+ ++|.|... .++|||+|+|++|+++||.+|+.++...|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 77 QIPRRGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp CC---------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 1 56755442 589999999999999999999999986554
No 50
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=6.7e-15 Score=134.50 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=72.9
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCC---eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~---~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
..+++.|||++ ++. .+.|+||||||+++ .|+||+++.+..|.+ .++|.++.+..... ....+++++|.|
T Consensus 6 ~~~~~~G~L~k--~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g----~I~L~g~~V~~~~~-~~~~~~~~~Fki 77 (112)
T 2coc_A 6 SGSLLCGPLRL--SES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPR----TIPLPSCKLSVPDP-EERLDSGHVWKL 77 (112)
T ss_dssp SSSSSEEEEEE--ESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCS----EECGGGCEEECCCS-SSCCSSSEEEEE
T ss_pred CCceEEEEEEe--cCC-CCCceEEEEEEECCCccEEEEECCCCccCcce----EEEcCCCEEEecCc-ccccCCCCEEEE
Confidence 45567798875 333 67899999999985 799999988765432 45666665553111 112346788887
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
... +++|+|+|+|++++++|+.+|+.|+...
T Consensus 78 ~~~---~~~y~f~A~s~e~~~~Wl~al~~A~~~~ 108 (112)
T 2coc_A 78 QWA---KQSWYLSASSAELQQQWLETLSTAAHSG 108 (112)
T ss_dssp EET---TEEEEEEESSHHHHHHHHHHHHHHHSCC
T ss_pred ecC---CeEEEEEcCCHHHHHHHHHHHHHHhcCC
Confidence 743 6899999999999999999999987643
No 51
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=5.7e-15 Score=140.40 Aligned_cols=100 Identities=26% Similarity=0.405 Sum_probs=75.6
Q ss_pred CCCceEEEeeeeeeecC------CCCCCcEEEEEEEeCC-----eEEEEeCCC-CCCCCCCceeeeeeCcEEcCCCccee
Q 004803 15 ASNTVFKSGPLFISSKG------IGWKSWKKRWFILTRT-----SLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVV 82 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg------~~~k~WkkRWfVL~g~-----~L~yYKd~~-~~~p~~g~~~~i~L~~I~L~~~~sv~ 82 (729)
....++++|||+ |++ ...+.|++|||||+++ .|+||++.. ... +.+.|.|..+..+.
T Consensus 14 ~~~~~~~~G~L~--K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~---------~~g~I~L~~~~~~~ 82 (150)
T 1wg7_A 14 QKGGITKHGWLY--KGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE---------PKGSIFLDSCMGVV 82 (150)
T ss_dssp CSCCCCCEEEEE--ECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC---------CSEEECTTTCCEEC
T ss_pred CCCCeeEEEEEE--EecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCC---------cCcEEecccCEEEe
Confidence 457799999777 555 3467899999999997 999999976 433 34446666655443
Q ss_pred ec-cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 83 VR-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 83 ~~-~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.. ..++++|.|... ++++|+|+|++.+|+.+|+.+|+.++...
T Consensus 83 ~~~~~~~~~F~i~~~--~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 83 QNNKVRRFAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp CCCSSCTTEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 22 346688887653 35899999999999999999999999743
No 52
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=4e-15 Score=136.86 Aligned_cols=110 Identities=23% Similarity=0.345 Sum_probs=74.6
Q ss_pred CCCceEEEeeeeeeec----C--CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccC
Q 004803 15 ASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RED 86 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kk----g--~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~--~~~ 86 (729)
....+.++|||+++.. | ...+.|++|||||+++.|+||+++.+........ ....|++..+..... ...
T Consensus 4 ~~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~---~~~~i~l~~~~~~~~~~~~~ 80 (123)
T 1wjm_A 4 GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYH---GEVPVSLARAQGSVAFDYRK 80 (123)
T ss_dssp CCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSS---SCCCEECTTCEEEECTTCSS
T ss_pred CCCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccC---CCceEEccCcEEeecccccC
Confidence 4567899997774321 1 1278999999999999999999976542100000 112244443322111 134
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
++++|.|.. .++++|+|+|+|++|+++||.+|+.++...|+
T Consensus 81 r~~~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 81 RKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp CSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 667888764 34799999999999999999999999986654
No 53
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.57 E-value=5.4e-15 Score=136.75 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=70.3
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--------Ccce
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--------KKLL 90 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~--------Kk~~ 90 (729)
++++|||+ |+|...++|++|||||+++.|+||+++..... ..+...+.|.++.+.... ..+. +.+.
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d-~~P~gsI~L~~c~v~~~~---~~~~~~~~~~~~~~~~ 79 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKD-LVPVMSLALSECTVTEHS---RKNSTSSPNSTGSDAK 79 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTC-CSCSEEEEGGGEEEEEEC---CCCC---------CCE
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcC-CCceEEEECCCCEEEEcc---cccccccccccCCCcE
Confidence 89999666 77777889999999999999999998753211 113334455544443311 1111 5567
Q ss_pred EEEecCCCc----ceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 91 TVLFPDGRD----GRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 91 fvit~~~~~----grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
|+|...... +++|+|+|+|.+|+++|+.+|+.++
T Consensus 80 F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 80 FVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 877654321 4799999999999999999999875
No 54
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=3.9e-15 Score=133.72 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEe
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (729)
....+.++|||+++ ..+.|++|||||+++.|+||+++... ..+.+.+.+.++.+.. .....++++|.|.
T Consensus 4 ~~~~~~~~G~L~K~----~~k~Wk~RwfvL~~~~L~yyk~~~~~---~~~~~~i~l~~~~v~~----~~~~~~~~~F~i~ 72 (107)
T 2cof_A 4 GSSGLETSSYLNVL----VNSQWKSRWCSVRDNHLHFYQDRNRS---KVAQQPLSLVGCEVVP----DPSPDHLYSFRIL 72 (107)
T ss_dssp CCCCCTTCCEEEEE----ETTEEEEEEEEECSSCEEEECSSTTC---SEEEEEECTTTCEEEC----CCBTTBSCEEEEE
T ss_pred CCCCCcEeEEEEEe----cCCCcceEEEEEECCEEEEEeCCccc---CCCeeEEeccceEEEE----CCCCCCCeEEEEE
Confidence 34567899977744 56789999999999999999987651 1223333333332221 1123456788776
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. ++++|+|+|+|.+|+++|+.+|+.++.
T Consensus 73 ~~--~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 73 HK--GEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp ET--TEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred eC--CCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 52 378999999999999999999998875
No 55
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.57 E-value=6.3e-15 Score=130.90 Aligned_cols=96 Identities=21% Similarity=0.358 Sum_probs=68.6
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcc
Q 004803 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (729)
++|||+ |+|...+.|++|||||+++.|+||+++.+... . +.+.|.|..+.. .....++++|.|.. .++
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~--~-----~~g~i~L~~~~v-~~~~~~~~~F~i~~--~~~ 68 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCK--G-----SKGSIKMAVCEI-KVHSADNTRMELII--PGE 68 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---C--C-----CSCEEEGGGCEE-ECCTTCSSEEEEEE--TTT
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccC--C-----cccEEEeeeeEE-EEcCCCCceEEEEe--CCC
Confidence 479665 77877889999999999999999999875321 1 234455543322 22233456676654 236
Q ss_pred eeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 101 RAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 101 rty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
++|+|+|+|.+|+++|+.+|+.|+...+
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~~ 96 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASLT 96 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998876443
No 56
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=131.35 Aligned_cols=102 Identities=24% Similarity=0.367 Sum_probs=71.9
Q ss_pred CCCceEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg-~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
+...++++|||+ |++ ...+.|++|||||+++.|+||+++.+..+. ..++|..+.+..... .....++++|.|
T Consensus 7 p~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~-~~~~~~~~~F~i 79 (117)
T 2d9y_A 7 GNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESIL----GSIPLLSFRVAAVQP-SDNISRKHTFKA 79 (117)
T ss_dssp SSCCCCEEEEEE--EECTTSSSCEEEEEEEEETTEEEEESSTTCCSCC----EEEECSSCEEEECCT-TTTCCCSSEEEE
T ss_pred CCCCeeEEEEEE--EeCCCCCCCceEEEEEECCCEEEEECCCCCCCcC----CEEEeCCeEEEEcCc-cccCCCccEEEE
Confidence 345789999777 555 357899999999999999999988765422 233343333211100 011245578887
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. .++++|+|+|+|.+|+.+|+.+|+.++.
T Consensus 80 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 80 EH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp EC--SSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred Ec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 53 2369999999999999999999999875
No 57
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=138.43 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=71.3
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC---CCCCCCceeeeeeCcEEcCCCcc--eeec----cC
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDLNNSGS--VVVR----ED 86 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~---~~p~~g~~~~i~L~~I~L~~~~s--v~~~----~~ 86 (729)
...|+++|||+++..|...+.|++|||||+++.|+||+++.+ .. +.+.|+|..+.. +... ..
T Consensus 2 ~~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~---------p~g~I~L~~~~~~~v~~~~~~~~~ 72 (134)
T 2y7b_A 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKN---------PIGRINLANCTSRQIEPANREFCA 72 (134)
T ss_dssp CCCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSC---------CSEEEEGGGBCSSSCEECCTTTCC
T ss_pred CCCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccC---------ceEEEEhhhCccccccccchhhcc
Confidence 356889998775433667789999999999999999995433 22 233455554432 2222 13
Q ss_pred CcceEEEecC--CC---------------cceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 87 KKLLTVLFPD--GR---------------DGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 87 Kk~~fvit~~--~~---------------~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
++++|.|... .. ..++|+|+|+|++|+.+|+.+|+.++.
T Consensus 73 ~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 73 RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp CTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5678877541 11 125899999999999999999999986
No 58
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.56 E-value=1.4e-14 Score=137.71 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=72.5
Q ss_pred CCCceEEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCC
Q 004803 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDK 87 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~--~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-----~~~K 87 (729)
....++++|||+++..+. ..+.|++|||||+++.|+||++..+.. +.+.|.|..+..+.. ...+
T Consensus 13 ~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 83 (148)
T 1u5f_A 13 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKK 83 (148)
T ss_dssp GCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECTTSCSSTTG
T ss_pred hCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcc---------cceEEEcCCcEEEECCCcccCCCC
Confidence 446899999777433221 347899999999999999999987644 233345544432211 2234
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.++|.|... ++++|+|+|+|.+++.+|+.+|+.++..
T Consensus 84 ~~~F~I~~~--~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 84 DCCFEICAP--DKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp GGEEEEECT--TSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred ccEEEEECC--CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 478887652 3599999999999999999999999863
No 59
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=134.78 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=71.8
Q ss_pred CCCceEEEeeeeeeec---C--CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCc---eeeeeeCcEEcCCCcceee---
Q 004803 15 ASNTVFKSGPLFISSK---G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG---EVNLTLGGIDLNNSGSVVV--- 83 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kk---g--~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~---~~~i~L~~I~L~~~~sv~~--- 83 (729)
...+|.|+|||+.++- | ...++|++|||||+++.|+||+++....+.+.. ....+.+.|+|..+.....
T Consensus 4 ~~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d 83 (124)
T 3pp2_A 4 RTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKD 83 (124)
T ss_dssp -----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGG
T ss_pred cCCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccc
Confidence 4568999999985521 2 234689999999999999999998765321100 0011334456655443222
Q ss_pred ccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 84 ~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
...++++|.+.+ .++++|+|+|++.+++++|+.+|+.||+
T Consensus 84 ~~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 84 KSSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 234567787764 4589999999999999999999999985
No 60
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.55 E-value=1.3e-14 Score=140.89 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=65.3
Q ss_pred ceEEEeeeeee--------ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCC--Ccc-eee-cc
Q 004803 18 TVFKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGS-VVV-RE 85 (729)
Q Consensus 18 ~v~KeG~L~l~--------Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~--~~s-v~~-~~ 85 (729)
.++++|||+++ |+|...+.|++|||||+++.|+||+++.+.... +.+.|.|.. +.. +.. ..
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~-------~~g~i~l~~~~~~~~~~~~~~ 74 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTP-------SEEEQPISVNACLIDISYSET 74 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC---------------CEECSSCEEEECSSSC
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccc-------cCCceEecccceEEEeccccC
Confidence 57899988865 556678899999999999999999998652211 112222222 211 111 13
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
.++++|.|... +++|+|+|++++|+++||.+|+.++...+
T Consensus 75 ~~~~~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~~~ 114 (168)
T 2j59_M 75 KRKNVFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLNE 114 (168)
T ss_dssp SCSSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCCH
T ss_pred CCCCEEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence 45678888754 48999999999999999999999987443
No 61
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=133.45 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=66.8
Q ss_pred ceEEEeeeeeeec-CC-CCCCcEEEEEEEeC-CeEEEEeCCCCCC-CCCCc-------eeeeeeCcEEcCCCcce-----
Q 004803 18 TVFKSGPLFISSK-GI-GWKSWKKRWFILTR-TSLVFFKNDPSAL-PQRGG-------EVNLTLGGIDLNNSGSV----- 81 (729)
Q Consensus 18 ~v~KeG~L~l~Kk-g~-~~k~WkkRWfVL~g-~~L~yYKd~~~~~-p~~g~-------~~~i~L~~I~L~~~~sv----- 81 (729)
.++|+|||+ |+ |. ..++|++|||||++ +.|+||++..+.. ...+. ....+.+.|.+..+...
T Consensus 3 ~~~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~ 80 (128)
T 2rlo_A 3 IPIKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG 80 (128)
T ss_dssp CEEEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCC
T ss_pred cceeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccc
Confidence 578999776 55 42 57899999999996 7888886522100 00011 11222233333333211
Q ss_pred -ee-ccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 82 -VV-REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 82 -~~-~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. .+.++++|.|... ++++|+|+|+|++|+++||.||+.++.
T Consensus 81 ~~~~~~~~~~~F~I~t~--~~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 81 SAGQAEEENFEFLIVSS--TGQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CCSSCCCCCCCEEEECT--TSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 00 1245678877542 369999999999999999999999986
No 62
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.53 E-value=1.3e-14 Score=130.76 Aligned_cols=103 Identities=23% Similarity=0.454 Sum_probs=71.2
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEE-eCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCccee---eccC-C-cce
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VRED-K-KLL 90 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL-~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~---~~~~-K-k~~ 90 (729)
..++++|||+ |+|...+.|++||||| .++.|+||+++.+..+.+ .+.+....|.+.....+. .... + +++
T Consensus 3 ~~~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g--~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 3 MAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIED--KVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSCSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEE--EEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred cceeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCc--cccccccceeecccccccccCCCCCCCcCcE
Confidence 3578999666 7777788999999999 889999999987644221 111222224433222211 2222 2 468
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
|.|.. .++++|+|+|+|++|+++|+.||+.|..
T Consensus 79 F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVC--RDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 88753 2379999999999999999999998863
No 63
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.53 E-value=3.6e-14 Score=143.67 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=74.2
Q ss_pred CceEEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCcc
Q 004803 17 NTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~--~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-----~~~Kk~ 89 (729)
..++++|||+++.++. ..+.|++|||||+++.|+||+++.... +.+.|.|..+..+.. ...+++
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~---------p~g~I~L~~~~~v~~~~~~~~~~k~~ 174 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKKDC 174 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc---------ceEEEEeCCcEEEEcCCccccCCCCC
Confidence 4699999887544321 467899999999999999999987654 234455555544332 223457
Q ss_pred eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
+|.|... ++++|+|+|++.+++.+|+.+|+.++..
T Consensus 175 ~F~I~t~--~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 175 CFEICAP--DKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp EEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 8887652 3699999999999999999999999863
No 64
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.53 E-value=1e-14 Score=134.32 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=75.1
Q ss_pred CCCceEEEeeeeeeec----C--CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cC
Q 004803 15 ASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--ED 86 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kk----g--~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--~~ 86 (729)
.+..+.|+|||+.+.. | ...+.|++|||||+++.|+||+++....+.++..+ ...+.|+|..+...... ..
T Consensus 4 ~~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~-~~~~~i~L~~~~v~~~~d~~k 82 (122)
T 1dro_A 4 TGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF-RGEPSYDLQNAAIEIASDYTK 82 (122)
T ss_dssp CCSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCS-SCCCBCCCSSCCCEECCSSSS
T ss_pred CCCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCccc-CCCceEECCCCEEEeCCCCCC
Confidence 3457889998875422 1 14789999999999999999999876543211100 01134555544332221 24
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
++++|.+.+ .++++|+|+|++++|+++|+.+|+.++..
T Consensus 83 r~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 83 KKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp STTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 567887763 34799999999999999999999999874
No 65
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.48 E-value=6.9e-14 Score=124.35 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=64.3
Q ss_pred EEeeeeeeec----C--CCCCCcEEEEEEEeCCeEEEEeCCCCCC--CCCCceeeeeeCcEEcCCCccee--eccCCcce
Q 004803 21 KSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVV--VREDKKLL 90 (729)
Q Consensus 21 KeG~L~l~Kk----g--~~~k~WkkRWfVL~g~~L~yYKd~~~~~--p~~g~~~~i~L~~I~L~~~~sv~--~~~~Kk~~ 90 (729)
++|||+++.. | ...+.|++|||||+++.|+||+++.+.. ....+ ...|++..+.... ....++++
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~-----~~~i~l~~~~~~~~~~~~~~~~~ 75 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHS-----EVPVSLKEAICEVALDYKKKKHV 75 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSS-----CCCEECTTCEEEECSSCCSSSSE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCC-----cceEECCCCEEEEcccccCCccE
Confidence 4797774430 1 4578999999999999999999876311 00011 2224444332211 12345678
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
|.|.+ .++++|+|+|+|.+|+.+|+.+|+.|
T Consensus 76 F~i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 76 FKLRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEEEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEEEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 87764 34799999999999999999999864
No 66
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.48 E-value=7.3e-14 Score=154.50 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=75.4
Q ss_pred CCCCceEEEeeeeeeec-CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCcceE
Q 004803 14 GASNTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLT 91 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kk-g~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s-v~~~~~Kk~~f 91 (729)
...+.+.|+||||++.+ |+.++.|+||||||+++.|+||+...... .+.|+|..|.. .....++++||
T Consensus 296 ~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~----------~~~~~l~~~~v~~~~~~~r~~cF 365 (407)
T 4h8s_A 296 INRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAG----------GLIQDLDNCSVMAVDCEDRRYCF 365 (407)
T ss_dssp CCCSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSC----------CCCBCSSCCEEEEECCTTCSSEE
T ss_pred ccCCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCC----------CeEEECCceEEEECCCCCCCceE
Confidence 44567899999997644 66678999999999999999998654321 11233433332 12235678999
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.|.... ..++|+|+|+|++|+.+||.||+.++.++
T Consensus 366 ~i~~~~-~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 366 QITTPN-GKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp EEECTT-SSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEEecC-CCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 876532 24789999999999999999999999754
No 67
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.47 E-value=1.1e-13 Score=141.54 Aligned_cols=99 Identities=27% Similarity=0.543 Sum_probs=79.6
Q ss_pred CCceEEEeeeeeeecCCC-----CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004803 16 SNTVFKSGPLFISSKGIG-----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~-----~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~ 90 (729)
...++++|||+ |+|.. .+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.....++++
T Consensus 55 ~~~~~k~G~L~--K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~---------~~g~I~L~~~~~v~~~~~k~~~ 123 (228)
T 3tfm_A 55 KQEALKQGWLH--NNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---------LKGTVEVRSAKEIIDNTNKENG 123 (228)
T ss_dssp CCCSSEEEEEE--ECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCS---------EEEEEEGGGCSEEEEETTTTSE
T ss_pred CCCcceEEEEE--EECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcc---------eeEEEEcCCCEEeccCCCCCcE
Confidence 45688999776 55543 38899999999999999999987643 5667888877665555567788
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
|.|... +++|+|+|+|.+|+++|+.+|+.++...|
T Consensus 124 F~I~t~---~r~~~l~A~s~~e~~~Wv~aL~~~i~~~~ 158 (228)
T 3tfm_A 124 IDIIMA---DRTFHLIAESPEDASQWFSVLSQVHSSTD 158 (228)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCCH
T ss_pred EEEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 887653 79999999999999999999999997543
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.45 E-value=6.2e-13 Score=123.69 Aligned_cols=103 Identities=15% Similarity=0.274 Sum_probs=70.7
Q ss_pred EEEeeeeee---ecCCC--CCCcEEEEEEEeCCeEEEEeCCCCCCC-----CCCceeeeeeCcEEcCCCcceeeccCCcc
Q 004803 20 FKSGPLFIS---SKGIG--WKSWKKRWFILTRTSLVFFKNDPSALP-----QRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (729)
Q Consensus 20 ~KeG~L~l~---Kkg~~--~k~WkkRWfVL~g~~L~yYKd~~~~~p-----~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~ 89 (729)
..+|+|... |+|.. +++|++|||||+|+.|+||+....... ...+...++|.++.+... ....+++
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~----e~~~~~~ 77 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLP----DDPEHPD 77 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECC----CCTTSTT
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEec----CCCCCCC
Confidence 468877643 55553 789999999999999999996631100 011223344444443311 1234667
Q ss_pred eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 90 ~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+|.+.. ...|.+|+|+|++.+++..|++||+.|+...
T Consensus 78 ~F~L~~-~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 78 IFQLNN-PDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EEEEEC-TTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred EEEEee-CCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 888873 2358999999999999999999999999743
No 69
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.44 E-value=2.9e-13 Score=146.93 Aligned_cols=102 Identities=25% Similarity=0.418 Sum_probs=76.2
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCccee-eccCCcceEEEecC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPD 96 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~-~~~~Kk~~fvit~~ 96 (729)
.++++|||+ |+|...+.|++|||||+++.|+||+++.+..| .+.|.|..+.... ....++++|.|...
T Consensus 212 ~~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p---------~G~I~L~~~~v~~~~~~~~~~~F~I~~~ 280 (347)
T 2r09_A 212 NPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---------RGIIPLENLSIREVEDPRKPNCFELYNP 280 (347)
T ss_dssp CCCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSSC---------SEEEECTTCEEEEECCSSCSSEEEEECS
T ss_pred ccccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccCC---------cEEEEcCCeEEEEccCCCCCCEEEEEeC
Confidence 468999666 77777899999999999999999999876542 3335555443221 22356678877643
Q ss_pred CC-------------------cceeEEEEeCCHHHHHHHHHHHHHHHhcCCch
Q 004803 97 GR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (729)
Q Consensus 97 ~~-------------------~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~ 130 (729)
.. ..++|+|+|+|++|+.+|+.+|+.++...|..
T Consensus 281 ~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~ 333 (347)
T 2r09_A 281 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFY 333 (347)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHH
T ss_pred CccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCH
Confidence 11 24899999999999999999999999866654
No 70
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.44 E-value=2.9e-13 Score=148.67 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEE
Q 004803 16 SNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVL 93 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~~Kk~~fvi 93 (729)
.+.++|+||||++.+++ .++.|++|||||+++.|+||++. +.. +.+.|+|..|..... ..++++||.|
T Consensus 275 ~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~-~~~---------~~~~i~l~~~~v~~~~~~~r~~~F~i 344 (385)
T 2q13_A 275 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVA---------GGLAMDIDNCSVMAVDCEDRRYCFQI 344 (385)
T ss_dssp CCCSCCEEEEEEC--------CCEEEEEEEETTEEEEECSS-CSS---------CEEEEECTTCEEEEECCTTCSSEEEE
T ss_pred CCCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCC-CcC---------CCceEEccceEEEeccccCCCceEEE
Confidence 35789999888443222 23579999999999999999983 322 123355555543222 2466789988
Q ss_pred ecCCCcc-eeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 94 FPDGRDG-RAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 94 t~~~~~g-rty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.+. ++ ++|+|+|+|++|+++||.||+.++..
T Consensus 345 ~t~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 345 TSF--DGKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp ECT--TSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred EeC--CCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 653 23 89999999999999999999999864
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.42 E-value=5.6e-13 Score=146.60 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCCceEEEeeeeeeecCCCC-CCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcce------eeccC-
Q 004803 15 ASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV------VVRED- 86 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~-k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv------~~~~~- 86 (729)
....++|+|||+ |+|... +.|++|||||+++.|+||+++.+.. ++|.|.|..+..+ .+...
T Consensus 265 l~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---------~~G~I~L~~~~~~~~v~~~~~~~~~ 333 (386)
T 3lju_X 265 LSRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---------ARGEVFIGSKESGYTVLHGFPPSTQ 333 (386)
T ss_dssp SSCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---------CSEEEECCCGGGTCEEEESCCTTCC
T ss_pred cccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc---------cceEEEeecceeeeeecccCCcccc
Confidence 356789999555 787776 8999999999999999999987654 3344555443332 11111
Q ss_pred C---cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 87 K---KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 87 K---k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
+ +++|.|... +|+|+|+|+|++|+++|+.||+.+|.+
T Consensus 334 ~~~~~~~F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 334 GHHWPHGITIVTP---DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCCSCEEEEEECS---SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcEEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1 467776543 699999999999999999999999975
No 72
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.38 E-value=5.9e-13 Score=139.15 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=69.7
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCC-------eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee--c
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--R 84 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~-------~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~--~ 84 (729)
.....++++|||+ |+ +.|++|||||+++ .|+||+++.+.... . ..+.+.|+|..+..+.. .
T Consensus 5 ~~~~~v~k~G~L~--K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~-~---~~p~g~I~L~~~~~V~~~~~ 74 (264)
T 1qqg_A 5 DGFSDVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHK-S---SAPKRSIPLESCFNINKRAD 74 (264)
T ss_dssp ----CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTT-C---SCCSEEEEGGGEEEEEEECC
T ss_pred CCCCCccEEEEEE--EC----CCCEeEEEEEECCCCCCCCCEEEEECCCcccccc-c---cCcceEEEeeceEEEEeccC
Confidence 4566899999776 44 6899999999998 99999987651000 0 00344566666554432 2
Q ss_pred cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
..++++|.|... +|+|+|+|+|++|+++|+.+|+.++...
T Consensus 75 ~~~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 75 SKNKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp SSCSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred CCCCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 345577877653 7999999999999999999999998643
No 73
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.36 E-value=1.3e-12 Score=137.09 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=71.6
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEec
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLFP 95 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s--v~~~~~Kk~~fvit~ 95 (729)
...++|||| |+|...++|++|||||+++.|+||++..+..+.+. .....+..+.+..... ......+++||.|.+
T Consensus 167 ~p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~-i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~ 243 (291)
T 3tca_A 167 VPELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDL-ACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKH 243 (291)
T ss_dssp CCCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTC-EEEEEGGGCEEEEECSHHHHHCCSSSCEEEEEC
T ss_pred CCceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccCc-eeeccceeEEEEecCccccccCCCCCeEEEEEc
Confidence 456899777 67777889999999999999999999877664431 1111222222211110 011234668898865
Q ss_pred CC---CcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 96 DG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 96 ~~---~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.. ...++|+|+|+|++++..||.||+.|..
T Consensus 244 ~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 244 PQIQKESQYIKYLCCDDARTLSQWVMGIRIAKY 276 (291)
T ss_dssp TTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 32 2347899999999999999999997753
No 74
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.28 E-value=4e-12 Score=116.95 Aligned_cols=99 Identities=15% Similarity=0.291 Sum_probs=66.8
Q ss_pred EEeeeeeeecCCCCC-CcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcce--------eec--cCCcc
Q 004803 21 KSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--------VVR--EDKKL 89 (729)
Q Consensus 21 KeG~L~l~Kkg~~~k-~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv--------~~~--~~Kk~ 89 (729)
.+|||.+.|+|+.++ .|++|||||+++.|+||+++.... ...+... |+++....| ... .+.++
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~p~~~-----Idl~~~~~V~~V~~~d~i~~~~~~~p~ 76 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSNPYMV-----LDIDKLFHVRPVTQTDVYRADAKEIPR 76 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTCCSEE-----ECGGGEEEEEECCTTTCSSSCTTTGGG
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCCceEE-----EECcccEEEEEcccccccccccccCCc
Confidence 489777656777777 899999999999999999864320 0011222 333322221 111 22346
Q ss_pred eEEEecCC---CcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 90 LTVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 90 ~fvit~~~---~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+|.|+... ...++|||.|+|.+|+++|+.+|+++|.
T Consensus 77 iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 77 IFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 67775432 3358999999999999999999998875
No 75
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.28 E-value=1.7e-11 Score=116.45 Aligned_cols=105 Identities=13% Similarity=0.260 Sum_probs=74.3
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCC---------CCC----C------------CCC-----------
Q 004803 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---------SAL----P------------QRG----------- 63 (729)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~---------~~~----p------------~~g----------- 63 (729)
+|.|||| +++..-+.|++|||||+++.|+|++... ... + ...
T Consensus 2 ~k~G~L~--~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILY--LEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEE--EEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEE--eecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 6899888 5556678899999999999999998221 110 0 000
Q ss_pred ----ceeeeeeCcEEcCCCcceeec---cCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 64 ----GEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 64 ----~~~~i~L~~I~L~~~~sv~~~---~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
+-..+..|.|+|..|...... ..++++|.|.+...+.++|+|.|+|.+++.+||.+|+.|+..
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 000112456777776654332 346688988876666789999999999999999999999863
No 76
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.24 E-value=1.4e-11 Score=135.57 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=67.9
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEE--eCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEEEe
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLF 94 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL--~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~--~~~Kk~~fvit 94 (729)
.+|+|||| |+|...+.|++||||| +++.|+||+++.+..| .+.|.|..+..+.. ...++++|.|.
T Consensus 146 ~~keG~L~--KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p---------~g~I~L~~~~~~~~~~~~~~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLW--KRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEP---------KAVMKIEHLNATFQPAKIGHPHGLQVT 214 (386)
T ss_dssp SEEEEEEE--EECSSSCCEEEEEEEEETTTTEEEEEC-----CC---------SEEEEGGGEEEEECHHHHTSTTCEEEE
T ss_pred ccccccee--eeccccCCceEEEEEEEcCCCEEEEECCCCccCc---------ccEEEeeccEEEEcccccCCCceEEEE
Confidence 58999777 8888889999999999 8999999999876653 33455554333221 12466777764
Q ss_pred -cCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 95 -~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
......|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 223346999999999999999999999874
No 77
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=5.4e-11 Score=111.16 Aligned_cols=99 Identities=18% Similarity=0.347 Sum_probs=68.7
Q ss_pred ceEEEeeeeee-ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEE
Q 004803 18 TVFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL 93 (729)
Q Consensus 18 ~v~KeG~L~l~-Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~---~~Kk~~fvi 93 (729)
....+|||-+. -++...+.||+|||+|+++.|+|||++.+.. +. +++.|.|..|. |.+. ..+++.|.+
T Consensus 8 ~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~e-----Pig~I~L~gce-V~pd~~~~~~kf~ikl 79 (137)
T 2ys3_A 8 IPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GD-----PIQQLNLKGCE-VVPDVNVSGQKFCIKL 79 (137)
T ss_dssp CCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SC-----CSCCBCTTTCE-EEECCBGGGTBEEEEE
T ss_pred CcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CC-----CceEEECCCCE-EeccccccCCceEEEE
Confidence 34567866433 2344578999999999999999999987752 11 34455555544 2222 245666544
Q ss_pred e-cCCCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 94 F-PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 94 t-~~~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
. +.....++|+|.|+|++++.+||+|++.|-
T Consensus 80 ~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAs 111 (137)
T 2ys3_A 80 LVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111 (137)
T ss_dssp EEECSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EccCCCCceEEEEECCCHHHHHHHHHHHHHhc
Confidence 3 322334899999999999999999999775
No 78
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.17 E-value=4.9e-11 Score=132.47 Aligned_cols=104 Identities=21% Similarity=0.340 Sum_probs=73.9
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEe-
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF- 94 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~-g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit- 94 (729)
..|+|+|||+ |+|...+.||+|||||+ ++.|+||++++...+.+ .+++..+.+..|........++++|.|.
T Consensus 4 ~~v~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 4 VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIRC 77 (446)
T ss_dssp CCEEEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEE
T ss_pred ceEEEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCccC----cccccCccccceeecCCCCCCCceeEEEc
Confidence 4699999555 88888999999999997 89999999987765332 3356666666555444444556677764
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
+........+|++++.+++++|+.||+.++..
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 33222334589999999999999999999753
No 79
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.17 E-value=1.9e-11 Score=128.14 Aligned_cols=106 Identities=26% Similarity=0.382 Sum_probs=68.8
Q ss_pred CCCceEEEeeeeee-----ecC-----CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcce-ee
Q 004803 15 ASNTVFKSGPLFIS-----SKG-----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VV 83 (729)
Q Consensus 15 ~~~~v~KeG~L~l~-----Kkg-----~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv-~~ 83 (729)
....|.|+|||..+ +++ ...+.|+++||||+++.|+||+++....... ...+.+.|.|..+... ..
T Consensus 7 ~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~---~~~p~~~I~L~ga~v~~a~ 83 (279)
T 3a8n_A 7 AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDH---NSVPKHAVWVENSIVQAVP 83 (279)
T ss_dssp ---CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC-----------CCCSSCCBCCSCEECCCT
T ss_pred cCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEeccccccccc---ccCCCceEeccCcEEEecc
Confidence 34568999988643 211 1367899999999999999999976432100 0012223444444332 11
Q ss_pred -ccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 84 -~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
...++++|.+.. .++++|+|+|++.+||+.|+.+|+.++.
T Consensus 84 d~~kKk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 84 EHPKKDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp TSSSSCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 134566777754 3689999999999999999999999886
No 80
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=3.6e-10 Score=103.73 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=72.6
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC-
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED- 86 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~------~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~- 86 (729)
.-...++|+||||++..+...+.|+||||||.+. .|-||..+........ +-+.|.|..|.+|.+...
T Consensus 7 ~m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~-----~rrVIrLsdCisV~~~~~e 81 (127)
T 2d9w_A 7 GMGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEA-----ARKVIRLSDCLRVAEAGGE 81 (127)
T ss_dssp CSCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSC-----CEEEECGGGEEEEEECCSC
T ss_pred cccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCC-----CceEEEhhhCCeEecccCc
Confidence 3456789999999998754455699999999764 8999988765432211 234566777666544322
Q ss_pred -----CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 87 -----KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 87 -----Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
..+.|.+.+. .++|+|.|++ .|+.+|+.+|..++-
T Consensus 82 ~~~pk~~~aF~l~T~---er~~~laAe~-~E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 82 ASSPRDTSAFFLETK---ERLYLLAAPA-AERGDWVQAICLLAF 121 (127)
T ss_dssp SSSCSSCEEEEEEES---SCEEEEEECH-HHHHHHHHHHHHHHT
T ss_pred cCCCCcceEEEEEeC---CcEEEEEeCc-HHHHHHHHHHHHHhc
Confidence 2244544432 6999999996 599999999998764
No 81
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.07 E-value=5e-10 Score=116.16 Aligned_cols=106 Identities=23% Similarity=0.186 Sum_probs=71.5
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEe
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLF 94 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s--v~~~~~Kk~~fvit 94 (729)
.....+|||| +++.+.++|+||||+|+++.|+||+...... .+.....+.+.++++-.... ...+..+++||.|.
T Consensus 130 ~~P~~~G~L~--~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~-~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik 206 (256)
T 3hk0_A 130 SSPEIQGFLH--VKELGKKSWKKLYVCLRRSGLYCSTKGTSAA-PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIK 206 (256)
T ss_dssp SCEEEEEEEE--EECTTSSCEEEEEEEEETTEEEEESSTTCCC-GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEE
T ss_pred CCCcceeEEE--EecCCCCcceEEEEEEeCCEEEEEecCCCCc-cccceEEEEcCCCEEEEecccccccCCCCCCEEEEE
Confidence 4567899888 5554568999999999999999998665322 12112223555555533221 11123456899887
Q ss_pred cCCC---cceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 95 PDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 95 ~~~~---~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+... ...++||+|++++++..|++||+.|..
T Consensus 207 ~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 207 PNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp ETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5322 124799999999999999999998875
No 82
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.99 E-value=1.1e-09 Score=115.06 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=67.1
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEe
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLF 94 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~s--v~~~~~Kk~~fvit 94 (729)
....++|||| +++.+.++|+||||+|+++.|+||+......+ ......+.|.++++-.... ...+..+++||.|.
T Consensus 156 ~~pe~~G~L~--~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~-r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik 232 (281)
T 4gmv_A 156 TVPEIEGVLW--LKDDGKKSWKKRYFLLRASGIYYVPKGKAKVS-RDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLK 232 (281)
T ss_dssp CCCCCEEEEE--EECTTSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEE
T ss_pred CCCccEEEEE--EECCCCCCCeEEEEEEeCCEEEEEeCCCCCcc-ccceEEEEcCCcEEEEecccccccCCCCCcEEEEe
Confidence 3456899887 55555688999999999999998886543222 1122223444444432211 01124567899987
Q ss_pred cCC---CcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 95 PDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 95 ~~~---~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+.. ....++||||++++++..|++||+-|..
T Consensus 233 ~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 233 HPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp CTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 532 1346899999999999999999998875
No 83
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.95 E-value=2.4e-09 Score=101.67 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=71.7
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
.....|++.|||+++ +| . .|++|||+|+.+.++||-++.... ..+.|.++.+..|....+ +.|+|.
T Consensus 47 ~~ge~Ilk~G~v~Kr-kG-l--~~kkR~liLT~~PrL~Yvdp~~~~---------~KGeIpls~~l~ve~k~~-~~F~I~ 112 (151)
T 1w1g_A 47 VENNLILKMGPVDKR-KG-L--FARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKNF-KTFFVH 112 (151)
T ss_dssp TTTCCEEEEEEEEEE-ET-T--EEEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEESSS-SEEEEE
T ss_pred CCCCcEEEEEEEEec-cc-C--cceeEEEEEcCCceEEEEcCcccc---------ccceEecCCCeeEEEcCC-CEEEEE
Confidence 467789999988843 33 2 399999999999888888876433 455678887766655443 345566
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
++ +|+|+|.+. ...+++|+.||+.++..
T Consensus 113 Tp----~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 113 TP----NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ET----TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred CC----CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 66 699999997 88999999999999863
No 84
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.92 E-value=3.7e-09 Score=101.17 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=71.2
Q ss_pred eEEEeeeeee-ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE-ecC
Q 004803 19 VFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPD 96 (729)
Q Consensus 19 v~KeG~L~l~-Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi-t~~ 96 (729)
..-.+||-+. -++...|.||+||||++++.|+|||++.+.. +.+...+.|.||.+.....+ ...|+.+.+ .+.
T Consensus 47 PeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDVnv---a~~Kf~IkL~vP~ 121 (173)
T 4f7h_A 47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDVNI---SGQKFNIKLLIPV 121 (173)
T ss_dssp TCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEE
T ss_pred hhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccccc---cccceeEEEeccC
Confidence 3456877433 3556689999999999999999999987743 44444555666655543221 344554433 332
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 97 ~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
......|+|.|+++..+.+||.|.+-|-.
T Consensus 122 ~~gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 122 AEGMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 33457899999999999999999997753
No 85
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.91 E-value=3.5e-09 Score=100.35 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=66.6
Q ss_pred eEEEeeeeee-ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCC
Q 004803 19 VFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (729)
Q Consensus 19 v~KeG~L~l~-Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (729)
..-.|||-+. -++...|.||+||||++++.|+|||++.+.. +.+...+.|.||.+..... -...++.+.+....
T Consensus 26 PeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDVn---va~~Kf~ikL~ip~ 100 (165)
T 4bbk_A 26 PKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDVN---VSGRKFGIKLLIPV 100 (165)
T ss_dssp CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEEE---TTTTEEEEEEEEEE
T ss_pred hhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEecccc---cccceeeEEEecCC
Confidence 3466877443 3556689999999999999999999988753 4444455555555543211 13456655543333
Q ss_pred Ccc-eeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 98 RDG-RAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 98 ~~g-rty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+| ..++|.|+|+.+..+||.|.+-|-.
T Consensus 101 ~~gm~e~~LrcdsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 101 ADGMNEVYLRCDHEDQYARWMAACILASK 129 (165)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCcceeeeeecCCHHHHHHHHHHhhhccc
Confidence 333 5899999999999999999997653
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.54 E-value=2.6e-07 Score=84.71 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------c
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--------~ 85 (729)
++++.++|+| |+-..+...+.|||+|++|+...+.+|+++.... ....|.|.....|... .
T Consensus 3 ~~~s~vlkeG--W~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~---------~ykeIpL~eIl~v~~~~~~~~l~~~ 71 (125)
T 2coa_A 3 SGSSGTLREG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPPG 71 (125)
T ss_dssp CCCCSCSEEE--EEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCTT
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeeeeehhHeecccccccccccCCC
Confidence 5678999999 6557777788899999999999999999987655 3344555554443332 1
Q ss_pred CCcceEEEecCCCcceeEEEEeC---C--------HHHHHHHHHHHHHHHh
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAE---T--------SEDLYEWKTALELALA 125 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAe---S--------~eE~~eWi~AL~~ai~ 125 (729)
...+||.|.+. ..+||++++ . .+.+..|..||+.|+.
T Consensus 72 ~~~hcFEi~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 72 TNPHCFEIVTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp SCCEEEEEECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCCceEEEEeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 23488988653 789999874 1 2569999999999985
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=9e-07 Score=81.42 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------c
Q 004803 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--------~ 85 (729)
.+++.++|+||+ -.....-+.|||+|++|+...|.+|.++.... ....|.|...-.|... .
T Consensus 3 ~~~s~vlkeGWm--VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------~ykeIpLseIL~v~~~~~~~~~~~~ 71 (129)
T 2d9z_A 3 SGSSGMVKEGWM--VHYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------YYKEIPLSEILRISSPRDFTNISQG 71 (129)
T ss_dssp SCCTTSEEEEEE--EEEESSCCCCEEEEEEEESSCEEEESCSSCCS---------CCCEECTTTCCEECCTTCCCCSSSC
T ss_pred CCCCceeecceE--EEEccCCccccceeeEecCCeEEEEecCCCCc---------eeceeeHHHhcccccccCccccCCC
Confidence 467899999954 45555566799999999999999999976654 2233444433332221 1
Q ss_pred CCcceEEEecCCCcceeEEEEeCC---------------HHHHHHHHHHHHHHHh
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAET---------------SEDLYEWKTALELALA 125 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS---------------~eE~~eWi~AL~~ai~ 125 (729)
...+||.+.+. ..+||+.++. .+.+..|..||+.|+.
T Consensus 72 ~~phcFEi~T~---~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 72 SNPHCFEIITD---TMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp SCCCSEEEECS---SCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEC---CEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 23488988653 6899998753 6899999999999985
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.81 E-value=0.00022 Score=65.78 Aligned_cols=106 Identities=20% Similarity=0.335 Sum_probs=69.5
Q ss_pred CCCCceEEEeee-eeeec-----CCCCCCcEEEEEEEeC------CeEEEEeCCCCCCCCCCceeeeeeCc-EEcCCCcc
Q 004803 14 GASNTVFKSGPL-FISSK-----GIGWKSWKKRWFILTR------TSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS 80 (729)
Q Consensus 14 ~~~~~v~KeG~L-~l~Kk-----g~~~k~WkkRWfVL~g------~~L~yYKd~~~~~p~~g~~~~i~L~~-I~L~~~~s 80 (729)
...-.+.|+|.| |.... ......|.|+|++|+. -.|-||..++..+|+. .+++.. +.+..++.
T Consensus 13 ~~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~----~i~cs~I~EVR~tt~ 88 (136)
T 1v5m_A 13 VELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKV----SIPLSAIIEVRTTMP 88 (136)
T ss_dssp CCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSS----CEETTTCCBCCCCCC
T ss_pred cccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCcc----ccchhhhhhhhhccc
Confidence 445578999977 33221 2346789999999964 2577887776666443 223332 23343333
Q ss_pred eeeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 81 v~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
... .++.+.|++.. .++..|+|.|.+..+++.|++.|+..+..
T Consensus 89 LEm-PD~~nTFVlK~--~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 89 LEM-PEKDNTFVLKV--ENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SSS-CCCTTEECCBC--TTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCccceEEEEe--cCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 211 34556777754 45679999999999999999999988763
No 89
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.42 E-value=0.00013 Score=74.14 Aligned_cols=40 Identities=23% Similarity=0.600 Sum_probs=32.8
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS 57 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~ 57 (729)
...+.+.|||+ |+|+..++|++|||||+++.|.||+....
T Consensus 18 ~~~~~~~g~l~--~~~~~~~~w~~rw~vl~~~~~~~~~~~~~ 57 (228)
T 3tfm_A 18 PGSPYFHSFLY--MNGGLMNSWKRRWCVLKDETFLWFRSKQE 57 (228)
T ss_dssp ---CCEEEEEE--ECCTTTCCCEEEEEEEETTEEEEESSCCC
T ss_pred CCCCceEEEEe--ecCcccccceEEEEEEeCCEEEEeccCCC
Confidence 34678899666 88989999999999999999999997654
No 90
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.29 E-value=0.00088 Score=66.04 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=65.2
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~---g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
..++++|.|.+... .+.|+.+|++|-.+.|.|-.-......-. .....+.|..+.+... ..+++.+|+|
T Consensus 69 R~Ll~eG~L~~k~~---~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~-----a~d~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKNA---AGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREV-----AHEEKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEECT---TCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECC-----SSCSSEEEEE
T ss_pred CceeeeceEEEecc---CCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEecc-----CCCCCeEEEE
Confidence 57999998753221 12589999999998887764321111000 0001122232222221 1345667887
Q ss_pred ecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 94 t~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
.......+.|.|+|.|..+++.|+.+|+.|+...|
T Consensus 141 ~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~ 175 (185)
T 2lg1_A 141 SMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLN 175 (185)
T ss_dssp CCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence 65433457999999999999999999999998654
No 91
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.22 E-value=0.00074 Score=67.74 Aligned_cols=98 Identities=22% Similarity=0.414 Sum_probs=60.6
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCC-------eEEEEeCCCCCCCCCCceeeeeeCcEE-cCCCcceeeccCCc
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGID-LNNSGSVVVREDKK 88 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~-------~L~yYKd~~~~~p~~g~~~~i~L~~I~-L~~~~sv~~~~~Kk 88 (729)
..++.+|+. +-+. .|+||+|||||+.- .|..||+..+.........++.|..|- +.. ...-+.+.
T Consensus 7 ~~~v~eg~v--k~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~---g~~ldk~s 79 (224)
T 3ml4_A 7 EAALVEGQV--KLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEP---ALPYEGLA 79 (224)
T ss_dssp CCCSEEEEE--EEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEE---EEEETTEE
T ss_pred cceeEEEee--eeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccc---cccccCcc
Confidence 456778944 3332 34799999999871 789999987643223334445554432 111 11112233
Q ss_pred c-eEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 L-LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~-~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+ +-+|+. ..++.|.+++.+.+.+|-..|+..+.
T Consensus 80 ~TlAIIc~----d~~~vLAFds~e~l~~W~~~l~~slG 113 (224)
T 3ml4_A 80 HTLAIICL----SQAVMLGFDSHEAMCAWDTRIRYALG 113 (224)
T ss_dssp EEEEEEES----SCEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cEEEEEec----CcEEEEEeCCHHHHHHHHHHHhhccC
Confidence 3 334444 46789999999999999999988664
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.82 E-value=0.0042 Score=57.92 Aligned_cols=85 Identities=15% Similarity=0.292 Sum_probs=61.1
Q ss_pred EEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHH
Q 004803 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (729)
Q Consensus 38 kkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi 117 (729)
+-|||+|=.+.|.|.+-..... .-.-...+++.++.+..... .+..+++|.|+. ....++.|.|.|.+|+++|+
T Consensus 45 ~eR~l~LF~~~Ll~~s~~~~~~-~f~~kgklPL~g~~V~~~ed---~~~~~~aFeI~g--~~~~~i~v~~~s~eE~~~Wl 118 (132)
T 1v61_A 45 EERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLDE---IEGSDCMFEITG--STVERIVVHCNNNQDFQEWM 118 (132)
T ss_dssp CEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTCS---SSSSCCCEEEEC--SSSCEEEECCCCSHHHHHHH
T ss_pred eEEEEEEcCCeEEEEEecCCCc-eEEEEEEEecceeEEEeccc---cccCccEEEEec--CCCceEEEEeCCHHHHHHHH
Confidence 6789999999888887543211 11113356777777765321 134568898874 34578999999999999999
Q ss_pred HHHHHHHhcCC
Q 004803 118 TALELALAQAP 128 (729)
Q Consensus 118 ~AL~~ai~~aP 128 (729)
.+|+.++..+|
T Consensus 119 ~~L~~~i~~~~ 129 (132)
T 1v61_A 119 EQLNRLTKSGP 129 (132)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHhhcc
Confidence 99999998776
No 93
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=96.71 E-value=0.0092 Score=64.42 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCC--------------ceeeeeeCcEEcCCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g--------------~~~~i~L~~I~L~~~~sv 81 (729)
...++++|.|... .. .+.|+.|||.|=.+.|.|.+.......-.. ....+++..+.+..
T Consensus 256 ~r~li~eG~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e---- 328 (377)
T 3p6a_A 256 KKKLVHEGPLTWR--VT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 328 (377)
T ss_dssp TSCEEEEEEEEEE--SS-SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEE----
T ss_pred cceEEEECCcEEE--ec-CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccc----
Confidence 4579999977422 21 236899999999999999885432110000 00123333333322
Q ss_pred eeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
...+.+.+|++.........|.|+|.|.+|.+.|+..|+.++...
T Consensus 329 -~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 329 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CTTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred -cccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 123455677776544456789999999999999999999999743
No 94
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.61 E-value=0.01 Score=65.11 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCC--------C------CceeeeeeCcEEcCCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--------R------GGEVNLTLGGIDLNNSGSV 81 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~--------~------g~~~~i~L~~I~L~~~~sv 81 (729)
...++++|.|.. +.. .+.|+.|||.|=.+.|.|.+.......- + .-...+.+..+.+..
T Consensus 292 ~r~li~eG~l~~--~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~---- 364 (418)
T 3t06_A 292 TRKMIHEGPLTW--RIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRS---- 364 (418)
T ss_dssp GSCEEEEEEEEE--CCB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceeEEeceEEE--EeC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecc----
Confidence 356999997753 221 2358999999999999998864321100 0 001123344444432
Q ss_pred eeccCCcceEEEecCCCc-ceeEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004803 82 VVREDKKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQAPS 129 (729)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~-grty~fqAeS~eE~~eWi~AL~~ai~~aPs 129 (729)
...+.+.|+++...... .+.|.|+|.|.++.+.|+.+|++++..++.
T Consensus 365 -~~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~ 412 (418)
T 3t06_A 365 -VATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHH 412 (418)
T ss_dssp -CSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred -ccccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCcc
Confidence 12344455565532222 279999999999999999999999986543
No 95
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=96.58 E-value=0.0082 Score=68.44 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=66.4
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCC--------------ceeeeeeCcEEcCCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g--------------~~~~i~L~~I~L~~~~sv 81 (729)
...++++|.|.. +.. ...|+.|||.|=.+.|.|.+.......-.. -...+++..+.+..
T Consensus 409 ~R~LI~eG~l~~--~~~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e---- 481 (536)
T 3odw_A 409 KKKLVHEGPLTW--RVT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 481 (536)
T ss_dssp TSCEEEEEEEEE--ESC-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEE----
T ss_pred cceeeeecceEE--Eec-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeec----
Confidence 467999997742 221 235899999999999999885432110000 00123333343332
Q ss_pred eeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCCch
Q 004803 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (729)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aPs~ 130 (729)
...+.+.+|++.........|.|+|.|.+|.+.|+..|+.+|..+..+
T Consensus 482 -~~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~ 529 (536)
T 3odw_A 482 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP 529 (536)
T ss_dssp -CTTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred -ccccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence 123455667776544456899999999999999999999999866543
No 96
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.26 E-value=0.043 Score=49.55 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTV 92 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~--~~Kk~~fv 92 (729)
++-.++++|.|..--.. ..+.=+++||.|=.+.|.|-.-.... .+. ... ...+.+.....+-.. ..-+.+|.
T Consensus 4 pgR~lv~eG~l~el~~~-~~k~~~~v~~FLfND~Ll~a~~~~~~---~~~-~~~-~~~~~L~~~~v~d~~d~~~~~n~f~ 77 (113)
T 1zc3_B 4 PGQYLVYNGDLVEYEAD-HMAQLQRVHGFLMNDCLLVATWLPQR---RGM-YRY-NALYPLDRLAVVNVKDNPPMKDMFK 77 (113)
T ss_dssp -CCCEEEEEEEEEEETT-TCCEEEEEEEEEESSEEEEEEEECCT---TSC-EEE-EEEEETTTCEEEEECCBTTBSSEEE
T ss_pred CCeEEEEeCcEEEEccc-cCCCCccEEEEecCCEEEEEEEeccC---ccc-EEE-EEEEEcccCEEEECCCCcccceEEE
Confidence 45578999966522111 11222567888888888887664321 111 111 112344332221111 22345565
Q ss_pred EecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 93 it~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
|... .+.|.|+|++.+|..+|+.+|++++.
T Consensus 78 i~~~---~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 78 LLMF---PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp EEET---TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEeC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5532 57899999999999999999999985
No 97
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.16 E-value=0.02 Score=62.98 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEe
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (729)
....++++|.|..... +.|+.|||.|-.+.|.|.+-..... -.-...+++.++.+... ..+..++.|.+.
T Consensus 240 ~~r~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~--y~~k~~i~L~~l~v~~~----~~~~~~~~f~i~ 309 (434)
T 3mpx_A 240 PGREFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGK--YRLKNTLAVANMKVSRP----VMEKVPYALKIE 309 (434)
T ss_dssp TTCCEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSC--EEEEEEEEC-----CCC----CCTTSCSEEEEE
T ss_pred CCcceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCe--EEEEEEEEcCCcEEEec----CCCCCCeeEEEe
Confidence 4456899997753322 3489999999999999998543211 00111233444444321 112345667664
Q ss_pred cCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 95 ~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.. ++.|.|+|.|.+++..|+.+|+.+|..
T Consensus 310 ~~---~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 310 TS---ESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp CS---SCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred cC---CeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 32 568999999999999999999999964
No 98
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.06 E-value=0.039 Score=59.27 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=62.6
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCC-----C---CCc------eeeeeeCcEEcCCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-----Q---RGG------EVNLTLGGIDLNNSGSV 81 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p-----~---~g~------~~~i~L~~I~L~~~~sv 81 (729)
...++++|.|. .+. ..+.|+.|||.|=.+.|.|.+....... + +.. ...+++..+.+..
T Consensus 250 ~R~li~~G~l~--~~~-~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~---- 322 (368)
T 1xcg_A 250 TRKMIHEGPLT--WRI-SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRS---- 322 (368)
T ss_dssp GSCEEEEEEEE--ECC-SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceEEeecceE--eee-cCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeec----
Confidence 45789999664 222 2345899999999999988876432100 0 000 1122333333221
Q ss_pred eeccCCcceEEEecCCC-cceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 82 VVREDKKLLTVLFPDGR-DGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 82 ~~~~~Kk~~fvit~~~~-~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
...+++.++++..... ....|.|+|.|.++.+.|+.+|+.|+..
T Consensus 323 -~~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 323 -VATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp -CSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1123444455543211 1378999999999999999999999864
No 99
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=96.02 E-value=0.049 Score=57.25 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=62.4
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecC-
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD- 96 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~- 96 (729)
.++..|.+.........+.++.|||.|=.+.|.|.+...... +.... ...+.|.+.........+..+..|.+...
T Consensus 202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y-~~k~~i~l~~~~v~e~~~~~~~~F~i~~~~ 278 (311)
T 1nty_A 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKY-LYKSKLFTSELGVTEHVEGDPCKFALWVGR 278 (311)
T ss_dssp CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEE-EEEEEEEGGGEEEECCCTTCTTEEEEEESS
T ss_pred CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCcee-EEeeeeeccceeeEEccCCCCceEEEEeCC
Confidence 466777554332222234679999999999999887643211 11111 11122333322111111223455666542
Q ss_pred -CCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 97 -GRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 97 -~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
...+..|.|+|.|.++...|+.+|+.++.+
T Consensus 279 ~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 279 TPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp SCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 123568999999999999999999999874
No 100
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=95.99 E-value=0.019 Score=62.35 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=64.7
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCC----------CCCceeeeeeCcEEcCCCcceeecc
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP----------QRGGEVNLTLGGIDLNNSGSVVVRE 85 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p----------~~g~~~~i~L~~I~L~~~~sv~~~~ 85 (729)
...++++|.|.. +.. ...++.|||.|=.+.|.|.+...+... ...+. ....+.|.+..........
T Consensus 254 ~R~li~eG~l~~--~~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~ 329 (385)
T 1txd_A 254 KRKMIHEGPLVW--KVN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSK-HTFSPVIKLSTVLVRQVAT 329 (385)
T ss_dssp GSCEEEEEEEEE--ESS-SSCBCCEEEEEESSEEEEEEEETTEEECCC--------------CCCSEEEGGGEEEEECCC
T ss_pred cceEEEECcEEE--EcC-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCC-cCCCCceeccccccccccc
Confidence 357899997653 221 245789999999999988775332100 00000 0001123333221111112
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~aP 128 (729)
+.+.+|++.......+.|.|+|.|.++.+.|+.+|+.++....
T Consensus 330 d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~ 372 (385)
T 1txd_A 330 DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK 372 (385)
T ss_dssp -CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 3456677765433467999999999999999999999997553
No 101
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=95.78 E-value=0.067 Score=57.18 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=65.1
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCC---CCceeeeeeCcEEcCCCcceeec--cCCcce
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---RGGEVNLTLGGIDLNNSGSVVVR--EDKKLL 90 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~---~g~~~~i~L~~I~L~~~~sv~~~--~~Kk~~ 90 (729)
....+++|.|. +.| .|+.|||.|=.+.|.|.+-....... .+.... ..+.|.+......... +.-++.
T Consensus 244 ~r~li~eG~l~--~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~-~k~~i~l~~~~v~~~~d~~~~~~~ 316 (354)
T 1dbh_A 244 CNEFIMEGTLT--RVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYR-LKEKFFMRKVQINDKDDTNEYKHA 316 (354)
T ss_dssp CCCEEEEEEEE--ETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEE-EEEEEESCSCEEEECCCSSSCCSE
T ss_pred cceEEEEeeEE--EEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCccee-EEEEEeccceEEEeCCcccccCcc
Confidence 45789999654 443 47889999999999888865321111 111111 2234555543322111 123456
Q ss_pred EEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 91 fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
|.+... ++..|.|+|.|.++...|+.+|+.+..+
T Consensus 317 F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 317 FEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp EEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred EEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 777543 2578999999999999999999998764
No 102
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=95.66 E-value=0.079 Score=48.87 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=31.4
Q ss_pred CcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
...||.|...+. .++..|.|.|.++++.|+..|+..+...
T Consensus 84 ~~~~FsIiy~~~-~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 84 EDRCFSIVFKDQ-RNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGGEEEEEESSS-CCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred ccceEEEEECCC-CceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 346787776532 4799999999999999999999988643
No 103
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.62 E-value=0.073 Score=57.14 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=62.8
Q ss_pred CceEEEeeeeeeec--CC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCc-eeeeeeCcEEcCCCcceeeccCCcceEE
Q 004803 17 NTVFKSGPLFISSK--GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGG-EVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (729)
Q Consensus 17 ~~v~KeG~L~l~Kk--g~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~-~~~i~L~~I~L~~~~sv~~~~~Kk~~fv 92 (729)
..+++.|.+++... |. ..+.++.|||.|=.+.|.|-+-...... ++. ........|.+............+..|.
T Consensus 205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~-~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~F~ 283 (354)
T 2rgn_B 205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVR-GGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFA 283 (354)
T ss_dssp CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC---------CCEEEEEEEEGGGEEEEESGGGCTTEEE
T ss_pred ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCC-CCCCCceEEcceeeccceeeeeccCCCCceEE
Confidence 45888897765432 11 2346799999999999999876543110 110 0011112233332211101122345566
Q ss_pred EecCCC--cceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 93 LFPDGR--DGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 93 it~~~~--~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
+...+. ....|.|+|.|.++...|+.+|+.++..
T Consensus 284 i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 284 LTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp EEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 654332 2478999999999999999999999863
No 104
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.54 E-value=0.058 Score=63.88 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=65.4
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEec-CC
Q 004803 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (729)
Q Consensus 19 v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~-~~ 97 (729)
|+..|||-+...+..+.+=+.+||||+..+|.|||++.... ....+++.+..+.....- -..+++.|.++- ..
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 613 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTEQ 613 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETTS
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhhc--cccccccccccCCcc
Confidence 99999776655555455568999999999999999975543 445677777776543221 013445565543 22
Q ss_pred C----cceeEEEEeCCHHHHHHHHHHHHHH
Q 004803 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (729)
Q Consensus 98 ~----~grty~fqAeS~eE~~eWi~AL~~a 123 (729)
+ +-+..-|.|+|.++.+.|+..+-+|
T Consensus 614 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 614 RNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp SCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhccccccchhhHHhhhhc
Confidence 2 3467889999999999999887443
No 105
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=95.53 E-value=0.18 Score=47.29 Aligned_cols=105 Identities=13% Similarity=-0.019 Sum_probs=63.3
Q ss_pred ceEEEeeeeeee--cCCCCCCcEEEEEEEeCCeEEEEeCCCCCC--CCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004803 18 TVFKSGPLFISS--KGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (729)
Q Consensus 18 ~v~KeG~L~l~K--kg~~~k~WkkRWfVL~g~~L~yYKd~~~~~--p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (729)
..+..+-||--- -...+++-+.|+|.|=++.|.|-|--+... ..-.-...+++.|+.+..... ..-+++|.+
T Consensus 12 rlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~----e~~p~~~~l 87 (140)
T 3qwm_A 12 RLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN----QYYPNGIRL 87 (140)
T ss_dssp CEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC----SSCTTEEEE
T ss_pred eEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC----CCCceEEEE
Confidence 467777665221 111234458999999999998887322111 000112344556655543322 234556665
Q ss_pred ecCCC---cceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 94 FPDGR---DGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 94 t~~~~---~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
..... ..+++.|+|.|..|+..|+.+|+.+|..
T Consensus 88 ~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e 123 (140)
T 3qwm_A 88 TSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAE 123 (140)
T ss_dssp EECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 53211 2378999999999999999999999963
No 106
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.30 E-value=0.15 Score=55.65 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=64.7
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceE
Q 004803 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLT 91 (729)
Q Consensus 15 ~~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~---~~Kk~~f 91 (729)
+....+++|.|.... ...+.++.|||.|=.+.|.|.+........-.-...+++..+.+......... ..-++.|
T Consensus 253 ~~r~Li~~G~l~~~~--~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 330 (402)
T 2dfk_A 253 RSSELIYTGEMAWIY--QPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF 330 (402)
T ss_dssp TCCCEEEEEEEEEES--STTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred cccceEEeceEEEEe--ccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeE
Confidence 345799999765332 22235799999999999999886432110000111233333333221110000 0112456
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.+.... .+..|.|+|.|.++...|+.+|+.++...
T Consensus 331 ~i~~~~-~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~ 365 (402)
T 2dfk_A 331 KLHNKE-TEEVHLFFAKKLEEKIRWLRAFREERKMV 365 (402)
T ss_dssp EEEESS-SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-CCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 665422 35789999999999999999999988754
No 107
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.09 E-value=0.14 Score=56.78 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=64.3
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--------CC
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--------DK 87 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~--------~K 87 (729)
....+++|.|.... .....++.|||.|=.+.|.|.+...... ... ...+.|.+.........+ .-
T Consensus 331 ~r~li~~G~l~~~~--~~~~~~~~r~~fLF~d~Ll~~k~~~~~~----~~~-~~k~~i~l~~~~v~~~~d~~~~~~~~~~ 403 (466)
T 2pz1_A 331 SSELIYSGELTRVT--QPQAKSQQRMFFLFDHQLIYCKKDLLRR----DVL-YYKGRLDMDGLEVVDLEDGKDRDLHVSI 403 (466)
T ss_dssp CSCEEEEEEEEEEC--TTTCCEEEEEEEEETTEEEEEEECSSCT----TCE-EEEEEEETTTCEEEECCSBSCCSSCCCB
T ss_pred cceeEEeeeEEEEe--cCCCCeeEEEEEEECCEEEEEEeccccC----Cce-EEeeeeeccceEEEeCCCCccccccccc
Confidence 44689999765332 2223578999999999999988643211 111 112234443322211111 11
Q ss_pred cceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 88 k~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+++|.+... ..+..|.|+|.|.++...|+.+|+.++...
T Consensus 404 ~~~F~i~~~-~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~ 442 (466)
T 2pz1_A 404 KNAFRLHRG-ATGDSHLLCTRKPEQKQRWLKAFAREREQV 442 (466)
T ss_dssp CEEEEEECS-SSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 345666542 235789999999999999999999998743
No 108
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.03 E-value=0.25 Score=52.87 Aligned_cols=109 Identities=14% Similarity=0.205 Sum_probs=64.5
Q ss_pred CceEEEeeeeee---ecCC------CCCCcEEEEEEEeCCeEEEEeCCCCCCC--CCCceeeeeeCcEEcCCCcceeecc
Q 004803 17 NTVFKSGPLFIS---SKGI------GWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVRE 85 (729)
Q Consensus 17 ~~v~KeG~L~l~---Kkg~------~~k~WkkRWfVL~g~~L~yYKd~~~~~p--~~g~~~~i~L~~I~L~~~~sv~~~~ 85 (729)
...+++|.|... ++|. .+..++.|||.|=.+.|.|.+....... ..+.... ....|.+..........
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~-~k~~i~l~~~~v~e~~~ 286 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYS-YKQSLNMTAVGITENVK 286 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEE-EEEEEEGGGEEEECCBT
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEE-EEEEeEcccceeeEcCC
Confidence 358899977532 2331 0235799999999999999886542110 0111111 11223333221111112
Q ss_pred CCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+.+..|.+...+. ...|.|+|.|.++...|+.+|+.++...
T Consensus 287 ~~~~~F~i~~~~~-~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 327 (353)
T 1kz7_A 287 GDTKKFEIWYNAR-EEVYIIQAPTPEIKAAWVNAIRKVLTSQ 327 (353)
T ss_dssp TBTTEEEEEETTT-TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCC-CcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 2345576655332 4789999999999999999999998643
No 109
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=95.01 E-value=0.18 Score=55.01 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=62.0
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCccee-eccCCcceEEEecC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPD 96 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~-~~~~Kk~~fvit~~ 96 (729)
..+++|.|.... ...+.++.||+.|=.+.|.|.+...... .-...+++..+.+....... ....-++.|.+...
T Consensus 233 rli~~G~l~~~~--~~~~~~~~~~~fLF~d~Ll~~k~k~~~y---~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~ 307 (406)
T 2vrw_B 233 RPKIDGELKITS--VERRSKTDRYAFLLDKALLICKRRGDSY---DLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIED 307 (406)
T ss_dssp SEEEEEEEEEEC--SSCCSCEEEEEEEESSEEEEEEEETTEE---EEEEEEETTTEEEEC--------CTTCEEEEEEET
T ss_pred cccccccEEEEe--cCCCccceEEEEecCCEEEEEEecCCce---EEEEEecccceeeeecCCCCccCCccceeeEEEec
Confidence 478999665432 2234589999999999998887642111 00112334444433221100 00011355655532
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 97 GRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 97 ~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
...+.|.|+|.|.++.+.|+.+|+.++..
T Consensus 308 -~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 336 (406)
T 2vrw_B 308 -QGAQGYELFFKTRELKKKWMEQFEMAISN 336 (406)
T ss_dssp -TCSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 23568999999999999999999999975
No 110
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.71 E-value=0.9 Score=43.63 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCCCC-------CCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL---SMSSGQF-------SSS-RGMDSKTRAELEEIALAEADVARLK 686 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l---~~~~~~~-------~~~-~~~~~~~~~ll~eia~~E~~v~~le 686 (729)
.+...|.+||+||..||.+|..|+.-|.--..-. +.....| ... ..+-...+.|-+-|..||-+-+++|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555688899999999999999986554332211 0000000 000 1122344566777777888888888
Q ss_pred ----HHHHHHHHHHHHHHhhhc
Q 004803 687 ----QKVAELHHQLNQQRQHHY 704 (729)
Q Consensus 687 ----~~~~~l~~~l~~~~~~~~ 704 (729)
=++..|+..+.||..+|-
T Consensus 139 id~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877664
No 111
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.40 E-value=0.29 Score=44.58 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 004803 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRL 624 (729)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~ 624 (729)
.|..-.+||.+|..-.+.||.|+..+.+-+.+..+.|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566799999999999999999988876666555443
No 112
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=94.12 E-value=0.25 Score=52.53 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCcee-----eeeeCcEEcCCCcc--eee-----
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV-----NLTLGGIDLNNSGS--VVV----- 83 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~-----~i~L~~I~L~~~~s--v~~----- 83 (729)
....+++|.|. +++ .+.|||.|=.+.|.|.+..... ++... .+++..+.+..... +..
T Consensus 229 ~r~li~~G~l~--~~~-----~~~~~~fLF~d~Ll~~k~~~~~---~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~ 298 (346)
T 2z0q_A 229 SRVLCCHGELK--NNR-----GVKLHVFLFQEVLVITRAVTHN---EQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLR 298 (346)
T ss_dssp CCCEEEEEEEE--ETT-----SCEEEEEEESSEEEEEEEEEET---TEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC-
T ss_pred CeEEEEeceeE--ECC-----CcEEEEEECCCcEEEEEEeccC---CceeeeeecCCcchhhceeeecCCCccccCcccc
Confidence 34578999664 321 2789999999999888753211 01111 12333333222110 000
Q ss_pred -----ccCCcceEEEecC-CCcceeEEEEeCCHHHHHHHHHHHHHHH
Q 004803 84 -----REDKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELAL 124 (729)
Q Consensus 84 -----~~~Kk~~fvit~~-~~~grty~fqAeS~eE~~eWi~AL~~ai 124 (729)
.+..+++|.+... +..+..|.|+|.|.++...|+.+|+.|+
T Consensus 299 g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 299 GAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp -CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 0112456776542 2346899999999999999999999986
No 113
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.96 E-value=0.21 Score=61.36 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=44.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ------------------------ALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~------------------------~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
..+||..-.+||.|+..+.+.|+.||..+..-+. .+...-..|+.+++.|++++++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888999998888888887765321111 1123344577777777777777
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 640 ERDLRAALEVGLSMSSGQFSSSRGMDSKT-RAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 640 e~~~~~~Le~~l~~~~~~~~~~~~~~~~~-~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
...-...||..+. ++ .+|=+.|+-||.+...|+|++.+|...+-
T Consensus 1003 ~~ke~~~lee~~~--------------~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1003 TQTEKKTIEEWAD--------------KYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666677776654 12 24446677888888888888888885443
No 114
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.65 E-value=0.22 Score=57.15 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=61.1
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEecC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPD 96 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~-~~~Kk~~fvit~~ 96 (729)
.++++|.|.+. ....+.++.||+.|=.+.|.|.+...... .-...+++..+.+........ ...-++.|.+...
T Consensus 405 rll~~G~l~~~--~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y---~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~ 479 (587)
T 3ky9_A 405 RPKIDGELKIT--SVERRSKMDRYAFLLDKALLICKRRGDSY---DLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIED 479 (587)
T ss_dssp CEEEEEEEEEE--CSSCCSCEEEEEEEETTEEEEEEEETTEE---EEEEEEEGGGEEEEEC-----CCCTTCEEEEEEET
T ss_pred ceEEEeeEEEE--eccCCCcceEEEEEECCEEEEEEecCCEE---EeeeeechhhceeeecCCCCcccccccceeEEEEc
Confidence 37899966533 23345689999999999999987652111 111223344444332211000 0112245655542
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 97 GRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 97 ~~~grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
...+.|.|+|.|.+++..|+.+|+.++..
T Consensus 480 -~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 480 -QGAQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp -TC---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 12378999999999999999999999964
No 115
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=92.97 E-value=0.018 Score=64.52 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCc----------ee-----eeeeCcEEcCCCcce
Q 004803 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG----------EV-----NLTLGGIDLNNSGSV 81 (729)
Q Consensus 17 ~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~----------~~-----~i~L~~I~L~~~~sv 81 (729)
..++++|.|+. . ++++.|||.|=.+.|.|.+-.+......|. .+ .+++.++.+....
T Consensus 251 r~li~eG~l~~--~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~-- 322 (510)
T 3jzy_A 251 RKLLHSGKLYK--T----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPT-- 322 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEEE--c----CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccC--
Confidence 45778886652 2 347899999999999888754332110110 11 1233333333211
Q ss_pred eeccCCcceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
.....+++|.+... .++|+|+|.|.+++..|+.+|+.++...
T Consensus 323 -d~~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 323 -DPSSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp ----------------------------------------------
T ss_pred -CCCccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 11234466777543 5789999999999999999999998754
No 116
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=92.35 E-value=0.36 Score=59.33 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=63.1
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCC---c----eeeeeeCcEEcCCCcceeeccCCc
Q 004803 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG---G----EVNLTLGGIDLNNSGSVVVREDKK 88 (729)
Q Consensus 16 ~~~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g---~----~~~i~L~~I~L~~~~sv~~~~~Kk 88 (729)
....+++|.|. +.+.+ +.|||.|=.+.|.|.+.........| . ...+++..+.+.... ....-+
T Consensus 441 ~r~Li~eG~l~--~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~---d~~~~~ 511 (1049)
T 3ksy_A 441 CNEFIMEGTLT--RVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKD---DTNEYK 511 (1049)
T ss_dssp CSCCCCEEEEE--ETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCC---CSSSCC
T ss_pred cceEEEeceEE--EEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECC---CCcccc
Confidence 45688999665 44322 78999999999999987643211111 1 112233333332211 112234
Q ss_pred ceEEEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004803 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (729)
Q Consensus 89 ~~fvit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~~a 127 (729)
+.|.+.. .++..|.|+|.|.+++..|+.+|+.+..++
T Consensus 512 ~~F~I~~--~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~ 548 (1049)
T 3ksy_A 512 HAFEIIL--KDENSVIFSAKSAEEKNNWMAALISLQYRS 548 (1049)
T ss_dssp SEEEECC--TTSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 5677654 335799999999999999999999887644
No 117
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.89 E-value=1.4 Score=37.75 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHH
Q 004803 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAE 671 (729)
Q Consensus 592 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~l 671 (729)
.+||.+|..-.-.||.|+.-+.+ +...|..++.+.+.|..+|..+|+-+. ..+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn-----------~~~~~edfk~KyE~E~~~R~~~E~d~~--------------~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDN-----------LAEDIMRLREKLQEEMLQREEAENTLQ--------------SFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhh
Confidence 46888887777777777766443 567788889999999999999998775 33556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 672 LEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
+.+..+.=.+ ||.+|.+|...|.=
T Consensus 58 vD~a~l~r~d---LE~kvesL~eEl~f 81 (86)
T 3swk_A 58 VDNASLARLD---LERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6666655444 78888887777653
No 118
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=91.80 E-value=0.66 Score=54.30 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=59.2
Q ss_pred CCCCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceE
Q 004803 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLT 91 (729)
Q Consensus 14 ~~~~~v~KeG~L~l~Kkg~-~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~-~~Kk~~f 91 (729)
.....+++.|++. |.++ ....|++|++.|..+.+.+...... +.. . +.+.....+... .....++
T Consensus 554 ~~~~~~i~~G~~~--k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~-----~~~-l-----~~~~~v~~v~k~~i~~~~~l 620 (689)
T 3v5w_A 554 ALGKDCIMHGYMS--KMGNPFLTQWQRRYFYLFPNRLEWRGEGEA-----PQS-L-----LTMEEIQSVEETQIKERKCL 620 (689)
T ss_dssp TSSSCCCEEEEEE--EC-------CEEEEEEEETTEEEEECTTSC-----CCE-E-----EEGGGEEEEEEEESSSCEEE
T ss_pred ccCCcceeecccc--cCCCcccchhhhhccccCCCcccccccCCC-----Ccc-e-----eeeccccccccCcCCCCcce
Confidence 4567789999554 5543 3568999999999999888754221 111 1 222221111111 1222344
Q ss_pred EEecCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 92 vit~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+. .+++++|++++.+..++.+|..+|+.+-.
T Consensus 621 ~~~--~k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 621 LLK--IRGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEE--ETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eee--ecCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 444 35689999999999999999999998765
No 119
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=91.36 E-value=0.65 Score=40.87 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~--~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
..||..|++.|.+|++.+++|..=|.+|++-..- ....+..|..+-.+.-+.-..|..|.+++-+++..+.++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999976532 12344456666666666667788888898888888888743
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.86 E-value=3.5 Score=37.80 Aligned_cols=31 Identities=42% Similarity=0.534 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (729)
+.+++.+.+....|.++...|+.||+.|++.
T Consensus 33 e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~ 63 (129)
T 2fxo_A 33 EARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555444
No 121
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=89.89 E-value=1.9 Score=46.24 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=50.4
Q ss_pred CcEEEEEEEeCCeEEE-EeCCCCCCCC-C----------Cc----eeeeeeCcEEcCCCcceeeccCCcceEEEec-C--
Q 004803 36 SWKKRWFILTRTSLVF-FKNDPSALPQ-R----------GG----EVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D-- 96 (729)
Q Consensus 36 ~WkkRWfVL~g~~L~y-YKd~~~~~p~-~----------g~----~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~-~-- 96 (729)
..+.|++.|=.+.|.+ .+.......+ + +. ...+++..+.+..... .....+.+|.+.. .
T Consensus 258 k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~~~~--~~~~~~~~f~i~~~~~~ 335 (377)
T 1foe_A 258 KEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPS--ADAEANAVCEIVHVKSE 335 (377)
T ss_dssp SSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCC--TTTTSCCEEEEEECCBT
T ss_pred ccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEecCC--CccchhhHHHHHhcccc
Confidence 4578888888887665 4532111100 0 01 1223444444433211 0112234455432 1
Q ss_pred --CCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 97 --GRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 97 --~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
+...+.|.|+|.|.++...|+.+|.+++.
T Consensus 336 ~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 336 SEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp GGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 23357899999999999999999999996
No 122
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.69 E-value=5.9 Score=44.82 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
++.-++...+|.++.+||+++...+.++.+.++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 444555566666666666655555555544333
No 123
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.98 E-value=7.5 Score=33.95 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
.++......+-++.+|+.+|.+|+..|...|...
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 49 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445577788888888888888888666544
No 124
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.49 E-value=2.8 Score=46.25 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+.+..+..|+|.+.++|+-|.+=+.--..-..- .+.+...|..+.-.-++-|.-+|.+|..|++++.+++.++-
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHT------VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999887643321110000 00011223333333557888899999999999999999988
Q ss_pred HHH
Q 004803 698 QQR 700 (729)
Q Consensus 698 ~~~ 700 (729)
++|
T Consensus 468 ~~~ 470 (471)
T 3mq9_A 468 RLR 470 (471)
T ss_dssp HHH
T ss_pred Hhc
Confidence 776
No 125
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.62 E-value=3.5 Score=40.42 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVA----------RLKQKVAELHHQLN 697 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~----------~le~~~~~l~~~l~ 697 (729)
+-.+--..|+.+|+||.|+- +|...+.+|+..|.
T Consensus 135 ~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 135 FEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888865 34455555555543
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.53 E-value=40 Score=34.13 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+....+|..||..++..+..||.++.++..++-
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777766654
No 127
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.78 E-value=26 Score=39.49 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=15.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 617 (729)
+..++.....|+.++...-+.-+.++..++.+++
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334444444444444444444444444444443
No 128
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=70.42 E-value=9 Score=29.72 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
++++.=.+|.||..+|++-|++|+.-|.-||..+-
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999998653
No 129
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.89 E-value=6.9 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
||-+=..|-.+...||++|.||++-|-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4556667888889999999999987753
No 130
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.88 E-value=37 Score=37.09 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG---MDSKTRAELEEIALAEADVAR 684 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~---~~~~~~~ll~eia~~E~~v~~ 684 (729)
||-.|-+....+...=..||.-|.+|+..-..=..|..++....+. ++-+.|.. +-.+.+.+++||..+|..|.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555566666667777777777666666777777777553 32233322 245777899999998886665
Q ss_pred HHHHHHHHHH
Q 004803 685 LKQKVAELHH 694 (729)
Q Consensus 685 le~~~~~l~~ 694 (729)
-+..+..|+.
T Consensus 103 ~~~~i~~l~~ 112 (409)
T 1m1j_C 103 HENTIQQLTD 112 (409)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555554
No 131
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.66 E-value=65 Score=29.19 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=58.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004803 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (729)
....+|..-|++|+..+.-| ++| + +..+-|...+..++..||..|..|+.+|..|.+....|.
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E-~~~--l-~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~------------- 103 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAE-QDN--L-ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELT------------- 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 33455666666666666654 222 2 244778889999999999999999999999988776544
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
++---+|.+|..|++++.++.
T Consensus 104 -----------~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 104 -----------AKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777666653
No 132
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=69.37 E-value=36 Score=28.84 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=35.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHER--RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (729)
Q Consensus 613 ~~~~~~~~~~--r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~ 690 (729)
.+|-.|..++ |..=.+.+..|++.|.+|.+-|. .||.-+|.+|.++.+.|.
T Consensus 23 gKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~---------------------------~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 23 GKREQAEEERYFRARAKEQLAALKKHKENEISHHA---------------------------KEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 4455555444 33333445667777777666654 677888888888888888
Q ss_pred HHHH
Q 004803 691 ELHH 694 (729)
Q Consensus 691 ~l~~ 694 (729)
.|..
T Consensus 76 ~l~~ 79 (84)
T 1gmj_A 76 KLKQ 79 (84)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7764
No 133
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=68.90 E-value=7.2 Score=40.14 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCcceEEEecCCCcc-eeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 86 DKKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 86 ~Kk~~fvit~~~~~g-rty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.++++|.+.. .+| .+++|+|++..++.+|+.+|+.+|.
T Consensus 224 ~~~~~fev~s--~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 224 PEPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp SSSCEEEEEE--TTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEEC--CCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 3566776653 234 5689999999999999999999874
No 134
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.90 E-value=48 Score=31.29 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
+...+...+.++.+|+.+|.+|+..|...|....
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999999998877654
No 135
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.67 E-value=7 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
||-+=..+-.+..+||.||.||+.-|.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 555666777788999999999998764
No 136
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.63 E-value=84 Score=34.82 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 607 ILQASLERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
.||++++.+.....+....+.+--..|+++.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4788887777766665555544444444433
No 137
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.51 E-value=8.3 Score=27.30 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
||-+=..+-.+...||++|.||++-|-
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 455556777888999999999998764
No 138
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.69 E-value=50 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 621 ERRLALEQDVSRLQEQLQAERDLRAALEV 649 (729)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (729)
..|..+|.|+..|++.+..+.-.|.-||.
T Consensus 62 ~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 62 LQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 34666777777777777666666665554
No 139
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=66.47 E-value=7.8 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
||-+=..+-.+..+||.||+||+.-|.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 555666777888999999999998764
No 140
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.07 E-value=7.4 Score=27.10 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.||.+=..+-.+...||+||.||+.-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3667777888889999999999987653
No 141
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.08 E-value=9.2 Score=47.50 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
..+...+..|++++..|+.+|+++..-...|+..+
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777777777766666555554443
No 142
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.79 E-value=11 Score=26.28 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.||.|=..+-.+..+||.+|.||+.-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3566677788888999999999987663
No 143
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.92 E-value=19 Score=39.44 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAER 641 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~ 641 (729)
||+||++.+.+-..|-.+||-+|.+|..+|++-+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766666778888888888887643
No 144
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.64 E-value=80 Score=31.85 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=43.6
Q ss_pred HHHHHHhhhhhHHHHHHHH------HHhhhhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 581 ELAIQRLEITKNDLRHRIA------KEARGNAILQAS------LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~------~~~~~n~~~~~~------~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
+..|.++|..-.+++.||. ..|+.|--+++- +++|...+.+.-.++...++.++..+..-......++
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555553 234444444432 2333444444444444444444444444444444444
Q ss_pred HhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 649 VGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (729)
Q Consensus 649 ~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~ 690 (729)
..|. ....++=++++-+++++..|..+-.
T Consensus 139 ~~l~-------------~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 139 KLAL-------------ELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 2233444445555555554444443
No 145
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.84 E-value=10 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
||-+=..+-.+...||+||.||++-|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 566666777888999999999998664
No 146
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=62.21 E-value=12 Score=26.12 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
|+-+=..|-.+...||++|.||++-|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45556677778889999999998865
No 147
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.43 E-value=79 Score=38.83 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhccc
Q 004803 287 RRLLQRILRMMHTISS 302 (729)
Q Consensus 287 ~~lL~~Ll~~L~~V~~ 302 (729)
-.++.||+..++.-..
T Consensus 409 ~~LF~wlV~~iN~~l~ 424 (1080)
T 2dfs_A 409 ANLFNWIVDHVNKALH 424 (1080)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3677788777766444
No 148
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.97 E-value=28 Score=25.30 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004803 675 IALAEADVARLKQKVA 690 (729)
Q Consensus 675 ia~~E~~v~~le~~~~ 690 (729)
||-||.+|++|-+++.
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6778888888877763
No 149
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=60.83 E-value=1.2e+02 Score=29.13 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhHHH----HHHHHHHhhhh-hhhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 581 ELAIQRLEITKNDL----RHRIAKEARGN-AILQASLERRKQAL-------HERRLALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 581 ~~~~~~~~~~~~~~----~~~~~~~~~~n-~~~~~~~~~~~~~~-------~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
-..+++|-.+=+.| +.++....-.+ +.||.++.+|+..+ ..-+.+||++...|+..+..=..-..-++
T Consensus 11 ~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 11 HEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655544443 44444444444 45889989888874 44455566666666665332111111222
Q ss_pred HhhCCCC-CCCC------CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004803 649 VGLSMSS-GQFS------SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 649 ~~l~~~~-~~~~------~~~~~~~~~~~ll~eia~~E~~v~~le~~~ 689 (729)
.-...++ +... .+.-+-.+.-++.+|...+|..|-.|.+=+
T Consensus 91 e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al 138 (174)
T 2p22_A 91 QFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRML 138 (174)
T ss_dssp HHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2121121 2211 223344678999999999999998877543
No 150
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.51 E-value=17 Score=24.37 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
|||.|-.||+-|++++..|++.+-
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665544
No 151
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=60.06 E-value=36 Score=29.76 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 580 EELAIQRLEITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
+-.+-+|||.+|.+-+..| .-|++..+||...=.+-|.-..+||..+..+|.+.+.+-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999 568999999999867767777899999999999887654
No 152
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.90 E-value=19 Score=33.27 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 624 LALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
...+.++.+|+.+|.+|+..|...|...
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 69 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEA 69 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999998766544
No 153
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=59.12 E-value=15 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
||-+=..+-.+...||+||.||++-|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45556677778889999999998765
No 154
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.95 E-value=13 Score=41.53 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccc
Q 004803 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQ 723 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~ 723 (729)
++..-|..|++|+.-|.++=.+|.-|...+--|+..+-||-.-+......+..|+.+
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~ 181 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQ 181 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHH
Confidence 333333444444444444444444444444444444444433333333334444333
No 155
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=58.59 E-value=84 Score=30.54 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=68.4
Q ss_pred HHHHhhhhhHHH---HHHHHHHhhhhhhhhhhHHHHHH----------------------------------------HH
Q 004803 583 AIQRLEITKNDL---RHRIAKEARGNAILQASLERRKQ----------------------------------------AL 619 (729)
Q Consensus 583 ~~~~~~~~~~~~---~~~~~~~~~~n~~~~~~~~~~~~----------------------------------------~~ 619 (729)
+|..|...=.+| |..|..|++.|+.|.+.++..=+ ..
T Consensus 20 Li~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~ 99 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETR 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccC
Confidence 444444433333 56788999999998877753322 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQAE-----------RDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e-----------~~~~~~Le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
++-|..|.+--..|+.|+.+= +.++.+|.+.|+. ..+. .-.++-.| -+||.|-.-|++-|--.|+
T Consensus 100 ~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~--eql~DY~~fv~mK-a~Ll~eqReLddkIklgeE 176 (190)
T 3thf_A 100 QQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA--DMCADYDYFINMK-AKLIADARDLAVRIKGSEE 176 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHH
Confidence 455777888888888888764 4455555555431 1111 00112222 3688888888888888888
Q ss_pred HHHHHHHHHHH
Q 004803 688 KVAELHHQLNQ 698 (729)
Q Consensus 688 ~~~~l~~~l~~ 698 (729)
|+..|+.-|-|
T Consensus 177 QL~~L~~sL~q 187 (190)
T 3thf_A 177 QLSSLSDALVQ 187 (190)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHHhhcc
Confidence 88888765543
No 156
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.27 E-value=15 Score=25.98 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAE 691 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (729)
|-.++.+||.+-.-||.+|.+|+.-+.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3457888888888899999888876543
No 157
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=57.44 E-value=15 Score=26.66 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 673 EEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+|+|.||.++.-||+++..|+..|.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998887764
No 158
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.87 E-value=8.2 Score=25.04 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~ 687 (729)
+.-.|-.|||.||-+|+-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 344567788999988888875
No 159
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.40 E-value=1.1e+02 Score=27.30 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
|..=-.|.-++.+|+++|.++...|.-||..++...- -=-.++.+|.+-+.-.|..+..|-+.+..++.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E------~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE------DSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444568888899999999999999999998753211 00123444444444444444444444444433
No 160
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=55.89 E-value=14 Score=35.77 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=28.0
Q ss_pred CcceEEEe-cCCCcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 87 KKLLTVLF-PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 87 Kk~~fvit-~~~~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+.+|.+. +++ ..+.+|+|.+..++..|+.+|+..|.
T Consensus 140 e~r~fEv~s~DG--~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 140 EPRYLEICAADG--QDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp SSCEEEEEETTT--TEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEcCCC--CeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 34455553 332 35899999999999999999998774
No 161
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.62 E-value=33 Score=32.82 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (729)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (729)
+-.-.+||+-+..||..+..-..-+..|+.-+
T Consensus 40 ~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 40 SKSISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345577777777777777777777777654
No 162
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.43 E-value=67 Score=29.16 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
|-.-|..|+-+|+.-+..+..||+.|.-. . ...=.++..+...|..||..+..++..+-++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~------------e-~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET------------K-GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888889999887411 1 1112245555556666666666666655544
No 163
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=54.72 E-value=1.2e+02 Score=29.05 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=50.3
Q ss_pred cEEEEEEEe-----CCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCCHH
Q 004803 37 WKKRWFILT-----RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSE 111 (729)
Q Consensus 37 WkkRWfVL~-----g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS~e 111 (729)
=|.||.+|. .+.++.||.+.... + .+.+ -..-+|..-..+........-|+++. +++||.+|.+..
T Consensus 64 KK~R~L~lav~~~~sgrV~lhK~K~N~n--g--sfsi-GkTW~L~ELk~Ie~~~~~~~gF~ltl----~K~Y~W~a~s~~ 134 (171)
T 3hie_A 64 KKKRLLILSAKPNNAKLIQIHKARENSD--G--SFQI-GRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNSAK 134 (171)
T ss_dssp EEEEEEEEEECTTCTTCEEEEEEEECTT--S--CEEE-EEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEECSSHH
T ss_pred ccceEEEEEEecCCCceEEEEEEEECCC--C--cEEe-eeeeecccceeeeccCCCCCcEEEEe----CCeEEEecCCHH
Confidence 477887763 23567777654432 1 1110 11122333222222122355688988 799999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 004803 112 DLYEWKTALELALAQA 127 (729)
Q Consensus 112 E~~eWi~AL~~ai~~a 127 (729)
|+..++..|-+...+.
T Consensus 135 Er~~FI~sL~K~y~ky 150 (171)
T 3hie_A 135 ERTVFIKSLITLYIQT 150 (171)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887643
No 164
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=54.56 E-value=15 Score=25.69 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
||-+=..+-.+..+|+.||+||++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 455556677778899999999998664
No 165
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.35 E-value=59 Score=35.52 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
+|.++-..|+.+++.=+.-|..+...+....| ..+.+|++++..+-++|..||+++..+..+|...-
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPP---------EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445666666653211 46788999999999999999999999998887544
No 166
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.38 E-value=56 Score=37.39 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=24.5
Q ss_pred HHHhhhhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 599 AKEARGNAILQASL-----ERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (729)
Q Consensus 599 ~~~~~~n~~~~~~~-----~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~ 644 (729)
.++..+++||||-- ++....-+.++.+.|++...|+++..+...+.
T Consensus 467 ~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777642 33444445555556665555555544443333
No 167
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=52.26 E-value=45 Score=28.01 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 004803 590 TKNDLRHRIAKEARGNAILQASLERRKQA----------LHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 590 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----------~~~~r~~Le~~V~~L~~~L~~ 639 (729)
+.-+||+....|++.=..+|--|.+=|.+ ...+-..|+.|+.+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888888888888877777544443 345566799999999999987
No 168
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.24 E-value=26 Score=24.84 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=22.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 665 DSKTRAELEEIALAEADVARLKQKVAE 691 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (729)
-.++.+||.+-.-||.+|.+|...+.+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 457889999999999999999887654
No 169
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.93 E-value=21 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQK 688 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~ 688 (729)
|-.|+.+||.+..-||.+|.+|..-
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3468899999999999999999754
No 170
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.30 E-value=1.7e+02 Score=27.52 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=45.7
Q ss_pred cCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 566 RKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQAS--------LERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--------~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
|-++-+.++|.. .+.|| ..|..+..+...=.+....+++. ....-..+...+..|++.+..|.+.|
T Consensus 18 ~~~~~~~~md~~-----l~~rL-~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 18 RSNPQTDSMDDL-----LIRRL-TDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHH-----HHHHH-HHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777766 55555 34555555553322222222221 11223355666677777787777777
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 638 QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 638 ~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
++=...-.+|... ...|=.+..++|..+.+|+++=..|=.++-+...
T Consensus 92 ~eK~K~~e~l~DE-----------------l~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 92 ALKNKNTERLNAA-----------------LISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555554443 3456677778888888888777666555554443
No 171
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=50.23 E-value=84 Score=26.75 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~e----ia~~E~~v~~le~~~~~l~~~l~ 697 (729)
||+..+.|++++++|..++.--|+-+ +-+.+ .+-|+.++.....++.+||.+|.
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLR------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666777777777766555422 22222 45677888888888888888875
No 172
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=50.11 E-value=23 Score=31.94 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=56.9
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-CCcceEEEecC
Q 004803 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVLFPD 96 (729)
Q Consensus 18 ~v~KeG~L~l~Kkg~~~k~WkkRWfVL~g~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~-~Kk~~fvit~~ 96 (729)
..+..|++...... +.=+.|++-|=...|.|.|-... .+......-..|.++......... +.+..|.+...
T Consensus 9 ~Ll~q~~f~V~~~~---~k~~eR~vFLFe~~ilf~K~~~~----~~~~~Y~~K~~ikl~~~~lte~~~~~d~~kFeiw~~ 81 (119)
T 1fho_A 9 RIIRHDAFQVWEGD---EPPKLRYVFLFRNKIMFTEQDAS----TSPPSYTHYSSIRLDKYNIRQHTTDEDTIVLQPQEP 81 (119)
T ss_dssp CSSEEEEEEECSTT---CSCEEEEEEEETTEEEEEEECCS----SSSCCCSSCCEEESSSCEEEEECTTCCEEEEECCST
T ss_pred CccccCceEEEeCC---CCcceEEEEEecCcEEEEEEecC----CCCCcEEEeeEEeeceeEEEecCCCCCCcEEEEccC
Confidence 35566644433221 22378999999999999987621 111111122234444433211112 33345776543
Q ss_pred CCcceeEEE--EeCCHH-HHHHHHHHHHHHH
Q 004803 97 GRDGRAFTL--KAETSE-DLYEWKTALELAL 124 (729)
Q Consensus 97 ~~~grty~f--qAeS~e-E~~eWi~AL~~ai 124 (729)
+. ...|.+ +|.|.+ ..+.|+..|+.++
T Consensus 82 ~~-~~~~il~~qA~s~e~~K~~Wv~~I~~~~ 111 (119)
T 1fho_A 82 GL-PSFRIKPKDFETSEYVRKAWLRDIAEEQ 111 (119)
T ss_dssp TC-CCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred CC-CceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence 32 256778 999999 9999999999743
No 173
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=49.96 E-value=1.8e+02 Score=27.74 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 004803 616 KQALHERRLALEQDVSRLQEQLQAERD------------LRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (729)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~L~~e~~------------~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~ 683 (729)
.+...+.+.+||+|-++|++ +..|++ ||..|-.|-+ .+++.-.=.=|++|++..+
T Consensus 22 ek~~~~k~~~le~ek~~l~~-~e~~r~k~~~h~~~k~~qlre~~d~gtt------------~~~i~~m~~yI~llrErea 88 (169)
T 3k29_A 22 EKVVKEKRRLLELEQEKLRE-RESERDKVKNHYMQKIRQLREQLDDGTT------------SDAILKMKAYIKVVAIQLS 88 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHHHHH
Confidence 34557778888888888764 334433 3334443222 2355555566888888888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004803 684 RLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 684 ~le~~~~~l~~~l~~~~~ 701 (729)
.||++|.+...++-.++.
T Consensus 89 ~lEqkVaeq~e~Ve~e~q 106 (169)
T 3k29_A 89 EEEEKVNKQKENVLAASK 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777765554
No 174
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.88 E-value=31 Score=25.43 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 670 AELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
+||.-|.-+-.||++-|+++.+|+.+|-+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888899999999999988877643
No 175
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.50 E-value=1.1e+02 Score=29.51 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
+.+++++++-|.+...++..|+++|...+ .-|...+.. +..=+.++++|..||+.|..+ |..+-.++
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr---~EL~aL~~a-------~~~DeakI~aL~~Ei~~Lr~q---L~~~R~k~ 136 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKR---YEYNALLTA-------SSPDTAKINAVAKEMESLGQK---LDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTS-------SSCCHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44455555556666666666666554332 233322220 222346788888888877776 55555666
Q ss_pred HHHHHHH
Q 004803 693 HHQLNQQ 699 (729)
Q Consensus 693 ~~~l~~~ 699 (729)
+.++..+
T Consensus 137 ~~em~Ke 143 (175)
T 3lay_A 137 DVAMAQA 143 (175)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666544
No 176
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.98 E-value=20 Score=25.00 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
|-.++.+||.|-.-||.||.+|..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 446888999999999999999875
No 177
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=48.77 E-value=40 Score=28.71 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhh
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEAR 603 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (729)
+.|-..-++||..|..|+..|.||.|
T Consensus 14 ~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 14 LAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456779999999999999999988
No 178
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.72 E-value=1.2e+02 Score=27.45 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
|-.-|..|+-+|+.=+..+..||+.|.-. .. ..=.++..+...|..||..+..++..+-++
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~------------e~-~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADA------------EQ-RGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456778888888888899999887411 11 111244555555666666666665555444
No 179
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.53 E-value=33 Score=29.01 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
+.|-.+|..++++|+.|++....|+.-
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777888888888888777653
No 180
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=45.45 E-value=66 Score=33.56 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=50.8
Q ss_pred CCcEEEEEEEeC-----CeEEEEeCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEecCCCcceeEEEEeCC
Q 004803 35 KSWKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAET 109 (729)
Q Consensus 35 k~WkkRWfVL~g-----~~L~yYKd~~~~~p~~g~~~~i~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAeS 109 (729)
+.-|.||.+|.- +.++.||-+.... +.+.+ -..-+|.....+...-....-|+++. +++||.+|.+
T Consensus 132 kkKK~R~LcLaV~~d~sGRV~LhKaKeN~n----gsFsI-GKTW~L~ELk~Id~~~~~~~gF~LTl----~K~YyW~A~s 202 (320)
T 3a58_A 132 ENKKKRLLILSAKPNNAKLIQIHKARENSD----GSFQI-GRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNS 202 (320)
T ss_dssp GGEEEEEEEEEECSSCTTCEEEEEEEECGG----GCEEE-EEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEEESS
T ss_pred cccCceEEEEEEecCCCceEEEEEEEecCC----CceEe-cceechhhhhhhhcccCCCCceEEEe----CCceEEecCC
Confidence 445888887743 3577777654321 11111 11122332222211013346689988 7999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 004803 110 SEDLYEWKTALELALAQ 126 (729)
Q Consensus 110 ~eE~~eWi~AL~~ai~~ 126 (729)
..|++.++..|-+...+
T Consensus 203 ~kER~~FI~sLvKiy~K 219 (320)
T 3a58_A 203 AKERTVFIKSLITLYIQ 219 (320)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888753
No 181
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.93 E-value=8.4 Score=28.75 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 592 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
..|.+|+|-..|+||.|..-+.| +..--.-||.|++.|.+-.
T Consensus 6 aqlknrvayklkenaklenivar----lendnanlekdianlekdi 47 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVAR----LENDNANLEKDIANLEKDI 47 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHH----HhcccchHHHHHHHHHHHH
Confidence 35777888888999998766542 3333445666666665543
No 182
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.71 E-value=25 Score=24.62 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
|-.++.+||.+-.-||.||++|..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446888999999999999999975
No 183
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=44.37 E-value=47 Score=22.31 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
-.|-.|+|.+|++--.|||+|..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456788888888888888887654
No 184
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=43.69 E-value=1.6e+02 Score=31.98 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS-RGMDSKTRAELEEIALAEADVARLK 686 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~-~~~~~~~~~ll~eia~~E~~v~~le 686 (729)
||..|-+....-+.-=.+||..|.++-..=..=..+=.+|...+....-+.+.- ..+-.+.+..|+||..+|.-|.+.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455555555555555566777777776666666666677776665332111110 2244566778999988888887766
Q ss_pred HHHHHHHHHHH
Q 004803 687 QKVAELHHQLN 697 (729)
Q Consensus 687 ~~~~~l~~~l~ 697 (729)
.++..|+..+.
T Consensus 105 ~~i~~l~~~~~ 115 (411)
T 3ghg_C 105 SSIRYLQEIYN 115 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 185
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.54 E-value=27 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQK 688 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~ 688 (729)
|-.|+.+||.+-..||.+|++|..-
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3467889999999999999998753
No 186
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.41 E-value=26 Score=43.54 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhccc
Q 004803 288 RLLQRILRMMHTISS 302 (729)
Q Consensus 288 ~lL~~Ll~~L~~V~~ 302 (729)
.++.||+..++....
T Consensus 436 ~lF~wlv~~iN~~l~ 450 (1184)
T 1i84_S 436 RLFRWILTRVNKALD 450 (1184)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhhC
Confidence 566777766655443
No 187
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.06 E-value=61 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
+-|...|-..+..||..|..|+.+|
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666666555
No 188
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=42.88 E-value=1.1e+02 Score=31.81 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHH
Q 004803 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELE 673 (729)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~ 673 (729)
|+.+-.++..++..+.+|.+++.+|..+-..=.....+|++--....-.|..+..+-..++..|+
T Consensus 12 ~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le 76 (302)
T 3ibp_A 12 VSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLE 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHH
Confidence 34455677888888999999999999888877777777777655544455544445555655554
No 189
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=42.49 E-value=60 Score=24.44 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=31.5
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHH
Q 004803 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRK 616 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 616 (729)
++=|.-|+|||.+=.-||.|.|+=.-+...-|..|..|=
T Consensus 1 ~dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 1 GALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999987777777777766553
No 190
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.37 E-value=96 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (729)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~--~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (729)
.=.+|.++-..|+.++++=+.-|..+...+.. ..| .-...|=.+++++=++|+.+|+++..+|+++..+-
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455666665543 122 11123344555555555555555555555554443
No 191
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=41.81 E-value=2.6e+02 Score=27.35 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=72.5
Q ss_pred chHHHHHHHhhhhhHHHHHHHH---------HHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 578 GEEELAIQRLEITKNDLRHRIA---------KEARGNAILQ-ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~n~~~~-~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~L 647 (729)
..=+.++.|.++-..+|..+-. .+.....--. ..+..|...+.++-..|.+-+..=+.+|++...++..+
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~ 127 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI 127 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899988888876542 2221111111 24566777777777777777777777777776666433
Q ss_pred HHh--------------hCCCCCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 004803 648 EVG--------------LSMSSGQFS--SSRGMDSKTRAELEEIALAEADVARLKQKVAEL---HHQLNQ 698 (729)
Q Consensus 648 e~~--------------l~~~~~~~~--~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l---~~~l~~ 698 (729)
+.+ |...-..+. ....-+..+++||..+..++.++..++.++..+ +.++.+
T Consensus 128 d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~ 197 (250)
T 1quu_A 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111001111 122335589999999999998888888555444 555544
No 192
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.62 E-value=1e+02 Score=33.94 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
.+.+|++++..|-++|..||+++.++..+|...-
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998888886554
No 193
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.27 E-value=24 Score=38.45 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~ 654 (729)
|++++.++.+.-..|++++.+|+++|.+|..+|+-|.+-+...
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555677777888899999999999999999999998877443
No 194
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=41.16 E-value=26 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004803 681 DVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 681 ~v~~le~~~~~l~~~l~~~~~~ 702 (729)
+++.||++-.+|+-|||++|-.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888899999988853
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.56 E-value=55 Score=36.56 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
+.+|++|+..|-++|..||+++..+..+|.+.--
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998888876543
No 196
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=40.35 E-value=36 Score=28.28 Aligned_cols=49 Identities=35% Similarity=0.499 Sum_probs=30.7
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.|...|+||=.|+.+=.-++.+||--++..+ +-|..|++-|..|.+.|+
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~----~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVK----QAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4778899999999988889999998876544 344455555555555443
No 197
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=40.15 E-value=2.5e+02 Score=26.74 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 004803 624 LALEQDVSRLQEQL 637 (729)
Q Consensus 624 ~~Le~~V~~L~~~L 637 (729)
..|+.++.+++.++
T Consensus 93 ~~~~~~~~~~~~~~ 106 (284)
T 1c1g_A 93 QLFEEELDRAQERL 106 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 198
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=40.08 E-value=1.7e+02 Score=27.96 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhhHHHHH----HHHHHhhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 580 EELAIQRLEITKNDLRH----RIAKEARGNAIL----------QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~----~~~~~~~~n~~~----------~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~ 645 (729)
=+..+.+.+.-+.+|.. ||. .-|..- -..+..|...++.+-..|.+-+..=+.+|+.-..++.
T Consensus 36 v~~l~~k~~~f~~el~~~~~~~v~---~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~ 112 (218)
T 3edu_A 36 VTLLRDKFRDFARETGAIGQERVD---NVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR 112 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888754 232 111111 1345667777777777777777766666665554444
Q ss_pred HHHHhhC------CCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 646 ALEVGLS------MSSGQFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 646 ~Le~~l~------~~~~~~~~~-~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
....+-. .....++.+ ..=+..+++++.....+|.++..++.+|..|...-.+-..
T Consensus 113 F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~ 175 (218)
T 3edu_A 113 YFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQT 175 (218)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222110 000111111 2224567788888888888888888888888765544433
No 199
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.06 E-value=1.8e+02 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004803 616 KQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
-..++..+..|+..+..|++.|.
T Consensus 19 l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 19 RNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566667777776666664
No 200
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.66 E-value=1.2e+02 Score=25.80 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM-----SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~-----~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (729)
.++.+...|.+....|+.++++=..+-..|+..=.- .-|.+-+....+.-...|=..+..++.+|..|+.+...+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666544444455543211 123222223333333444445556666666666666666
Q ss_pred HHHHHHHHh
Q 004803 693 HHQLNQQRQ 701 (729)
Q Consensus 693 ~~~l~~~~~ 701 (729)
+.++..-+.
T Consensus 92 ~~~l~~lk~ 100 (107)
T 1fxk_A 92 MKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554443
No 201
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=37.77 E-value=57 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (729)
|++-+..|...+.+|-.+||.-+..|+.+|+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777765
No 202
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=37.70 E-value=74 Score=26.73 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004803 627 EQDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (729)
Q Consensus 627 e~~V~~L~~~L~~e~~~~~~Le~~l~~-~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~ 704 (729)
++-+..|++||.-|..++.=.|+.+.. ..| +.+-+.||+|--.+=.| =..||.-||.|+.+-.+.+.
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~g--------~~~drKlLaeAQqmL~D---Sk~KIe~lRmqI~k~~q~~~ 74 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNG--------STKDRKLLLTAQQMLQD---SKTKIDIIRMQLRRALQADQ 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999998753 222 23457788776554333 56788899999877444443
No 203
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=36.52 E-value=1.9e+02 Score=27.02 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=67.6
Q ss_pred HHHHHHHhhhhhHHHHHH---HH-HHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004803 580 EELAIQRLEITKNDLRHR---IA-KEARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE- 648 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~---~~-~~~~~n~~~~------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le- 648 (729)
=+.++++-+.-+.++..+ +. -...|+..++ ..+..|-..+++++.+|.+-...=+.+|+.=..++....
T Consensus 39 ~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d 118 (185)
T 3lbx_B 39 VELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRD 118 (185)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666433 31 1112344333 346777778888888877777666666654433332111
Q ss_pred -----HhhCCCCCCC---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 649 -----VGLSMSSGQF---SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (729)
Q Consensus 649 -----~~l~~~~~~~---~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (729)
.-|...-..| .++ .-...+.+||.+-..+|.++..-+.+|..|..
T Consensus 119 ~~~~~~Wl~~~e~~L~~~~~g-~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~~ 171 (185)
T 3lbx_B 119 ASVAEAWLIAQEPYLASGDFG-HTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS
T ss_pred HHHHHHHHHHhHhhhccCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 1111100111 122 23457999999999999999999999999875
No 204
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.05 E-value=1.4e+02 Score=32.53 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQLQAERD 642 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (729)
++.+..+.+.+.+|||.|.++|+.+++++.
T Consensus 359 ~~~~~~l~~~~~~le~~~~~~~~~~~~~~~ 388 (487)
T 3oja_A 359 KQAKITLEQKKKALDEQVSNGRRAHAELDG 388 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444556777788888888888888876553
No 205
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.85 E-value=17 Score=23.56 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQKVAELH 693 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~ 693 (729)
|-..||..|+-|+|++.+|+
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555543
No 206
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.70 E-value=53 Score=25.26 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004803 676 ALAEADVARLKQKVAELHHQLNQQRQH 702 (729)
Q Consensus 676 a~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (729)
.-+|-.|.+||+.|++|...|..+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456888999999999999988887654
No 207
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.48 E-value=1.3e+02 Score=26.02 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCCCCCCCCCC-------hhHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM-----SSGQFSSSRGMD-------SKTRAELEEIALAEADVARL 685 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~-----~~~~~~~~~~~~-------~~~~~ll~eia~~E~~v~~l 685 (729)
.++.+...|.+....|+.++++=...-..|+..=.- .-|.+-+....+ .....+=.+|..||..+.++
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l 96 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKL 96 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555655555544444444432211 112111112222 22233333455555555555
Q ss_pred HHHHHHHHHHHHHH
Q 004803 686 KQKVAELHHQLNQQ 699 (729)
Q Consensus 686 e~~~~~l~~~l~~~ 699 (729)
+.++.+|+.+|++-
T Consensus 97 ~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 97 NEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 208
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.17 E-value=73 Score=21.39 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 668 TRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
+-+|-.|||.|-.||+-|+-++..|++.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566778888888888888888877654
No 209
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=34.14 E-value=18 Score=25.25 Aligned_cols=16 Identities=38% Similarity=0.374 Sum_probs=14.3
Q ss_pred HHHHHHhhhhhhhhhh
Q 004803 596 HRIAKEARGNAILQAS 611 (729)
Q Consensus 596 ~~~~~~~~~n~~~~~~ 611 (729)
.||+.|.-+|+-||-.
T Consensus 17 ~~IgDEld~N~ELQrm 32 (34)
T 3pk1_B 17 KRIGDELDSNMELQRM 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcccHHHHHh
Confidence 5899999999999964
No 210
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.14 E-value=56 Score=25.22 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
-+..+-+|..|++-|-..|..|.+++.+|+.+|.|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999999988863
No 211
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.08 E-value=47 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 004803 665 DSKTRAELEEIALAEADVARLKQK 688 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~ 688 (729)
-.|+.+||.+=..||.+|++|..-
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457889999999999999998753
No 212
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.60 E-value=2.3e+02 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 671 ELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 671 ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
+-.|-+-||.++.+|...+.+|+..
T Consensus 68 ~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 68 LTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455556666666666555544
No 213
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.56 E-value=67 Score=22.51 Aligned_cols=25 Identities=8% Similarity=0.217 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 613 ERRKQALHERRLALEQDVSRLQEQL 637 (729)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L 637 (729)
+-.=..+-.+...|+.||.||++-|
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3334456667788999999998866
No 214
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=33.43 E-value=92 Score=31.36 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=30.3
Q ss_pred HHHhhhhhhhhhh---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHH
Q 004803 599 AKEARGNAILQAS---------LERRKQALHERRLALEQDV-SRLQEQLQAERDL-RAALE 648 (729)
Q Consensus 599 ~~~~~~n~~~~~~---------~~~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~-~~~Le 648 (729)
++||+-|+..++. +.++=.+-.+||..-|.+| ..|.+...+|+.+ +.|++
T Consensus 127 aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 127 AEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888776665 2333345566666655555 4566666777666 55554
No 215
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=32.89 E-value=70 Score=37.94 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=28.5
Q ss_pred ceEEEecCCCc--ceeEEEEeCCHHHHHHHHHHHHHHHhc
Q 004803 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (729)
Q Consensus 89 ~~fvit~~~~~--grty~fqAeS~eE~~eWi~AL~~ai~~ 126 (729)
.||.|...... -+.+.|.|.+.++++.|+..|+..+..
T Consensus 97 ~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~ 136 (799)
T 2zkm_X 97 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH 136 (799)
T ss_dssp TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 46666553221 246899999999999999999988863
No 216
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.84 E-value=2.7e+02 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004803 674 EIALAEADVARLKQKVAELHHQLNQQRQHH 703 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~~~~ 703 (729)
.|.-|+.+|..|.+++.+.-..+-+.|.++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555566666555555555555443
No 217
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.75 E-value=53 Score=21.30 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
||..||-+---|||++..|++.+-
T Consensus 1 eidalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHH
Confidence 456788888999999999998764
No 218
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.60 E-value=61 Score=29.28 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (729)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (729)
-+++|+...-.|.||..|..++.+|+..|..+
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788888888889999999999998888643
No 219
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.56 E-value=1.1e+02 Score=34.23 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=23.5
Q ss_pred hHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004803 667 KTRAE----LEE-IALAEADVARLKQKVAELHHQLNQQRQ 701 (729)
Q Consensus 667 ~~~~l----l~e-ia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (729)
.+.+| ++| ...|-++|..||+++..+..+|.+.--
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667 788 888888888888888888887775443
No 220
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.35 E-value=1.7e+02 Score=26.34 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004803 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (729)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~ 688 (729)
.|.+|+.+|..+|.. +|+=|..|..+. =...+.++..||+.|+.+|.+|..+
T Consensus 7 ~~K~Eiq~L~drLD~---~~rKlaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDA---IRHQQADLSLVE---------AADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHSCTTT---------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999875 566666666532 2345566777777777777776654
No 221
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.59 E-value=2e+02 Score=22.64 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (729)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (729)
++.-.++=..|+++|..|+.+- .+|-.+|+.|..++..|++.+..
T Consensus 18 R~rKk~~~~~Le~~v~~L~~~n-------------------------------~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 18 RNRRRELTDTLQAETDQLEDEK-------------------------------SALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHh
No 222
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.57 E-value=1.5e+02 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~ 638 (729)
.+++...+|+++|..||.|++
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345666677777777777764
No 223
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.41 E-value=1.8e+02 Score=32.54 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH------------------H
Q 004803 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA------------------R 684 (729)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~------------------~ 684 (729)
=.+|++-+..|+..++.....-++|+..| ++++.+|--||.+|. .
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnL-----------------edq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd 174 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNV-----------------RAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVD 174 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhccccccchheeecc
Confidence 34688888888888888887778888755 578999999999984 2
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 004803 685 LKQKVAELHHQLNQQRQHHY 704 (729)
Q Consensus 685 le~~~~~l~~~l~~~~~~~~ 704 (729)
|+-+ ++++.||.|---.+.
T Consensus 175 ~~sY-~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 175 LKDY-EDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHH-HHHHHHHHHHHTTCC
T ss_pred hHHH-HHHHHHHHHHhhccc
Confidence 3333 456777776554443
No 224
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.40 E-value=43 Score=24.94 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004803 675 IALAEADVARLKQ 687 (729)
Q Consensus 675 ia~~E~~v~~le~ 687 (729)
||-||.+|++||.
T Consensus 40 ianlekdianler 52 (56)
T 3he4_A 40 IANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 225
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.14 E-value=50 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 676 ALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 676 a~~E~~v~~le~~~~~l~~~l~ 697 (729)
..||.-|..||.|+.+|+.+|.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998874
No 226
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.06 E-value=1.2e+02 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 618 ALHERRLALEQDVSRLQEQLQ 638 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~ 638 (729)
|-..||.-=.+....|+.+.+
T Consensus 13 AA~R~R~KKk~~~~~le~~~~ 33 (63)
T 1ci6_A 13 AATRYRQKKRAEQEALTGECK 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 227
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.93 E-value=90 Score=30.61 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLK 686 (729)
Q Consensus 674 eia~~E~~v~~le 686 (729)
||+.|..+...|.
T Consensus 130 Ei~~LkeEn~eLk 142 (209)
T 2wvr_A 130 EIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 228
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=28.64 E-value=3.3e+02 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=25.2
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 98 ~~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
...+.|+|-|.+.+|+.+=+..|+..++
T Consensus 87 ~e~KrYdfEA~s~~ea~EIV~~ik~~~~ 114 (121)
T 3ulb_A 87 DDIKRYYFEAVSGQECTEIVTRLQNLLS 114 (121)
T ss_dssp SSCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcceeEEEeCCHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999885
No 229
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.52 E-value=1.6e+02 Score=28.65 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 004803 625 ALEQDVSRLQEQLQ 638 (729)
Q Consensus 625 ~Le~~V~~L~~~L~ 638 (729)
.|.+|+..|-.||+
T Consensus 24 ~L~~En~~L~~ql~ 37 (190)
T 4emc_A 24 NLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 230
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.39 E-value=2.9e+02 Score=30.81 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (729)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (729)
..+.+|++|+..|-++|..||+++.++..+|...-
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999988888887654
No 231
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.34 E-value=54 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 673 EEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
.|+..||..|..||.++..|..+|.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788888888888888888875
No 232
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.16 E-value=62 Score=35.28 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 004803 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (729)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~ 658 (729)
+..|++.+.++..+++.+++.+++||.+|...|+-|.+.+....|.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 35556677777777888888999999999999999988875544543
No 233
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.78 E-value=99 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
|-.|++..+..|++|.-+|.-|+++-..|..+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999998887775543
No 234
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.74 E-value=96 Score=24.25 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~ 689 (729)
.+|-.+|..|+.+|..|++.+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777665
No 235
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.55 E-value=70 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
|-.|+.+||.+=..||.+|++|..
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 346788999999999999999875
No 236
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.52 E-value=70 Score=22.38 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (729)
|-.++.+||.+=..||.+|.+|..
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345778899999999999888865
No 237
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.27 E-value=1.1e+02 Score=25.30 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH
Q 004803 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLE 613 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 613 (729)
=|.-|+|||.+=.-||.|.|+=.-+...-|..|+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999976666666666544
No 238
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.75 E-value=95 Score=22.81 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 610 ASLERRKQALHERRLALEQDVSRLQEQ 636 (729)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~ 636 (729)
..||.|.+.++.+-.+||+-|.-||..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888999999999999988764
No 239
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=26.67 E-value=12 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQK 688 (729)
Q Consensus 674 eia~~E~~v~~le~~ 688 (729)
++.-||.+|-+||-+
T Consensus 9 nvkrlekevgklege 23 (28)
T 4dac_A 9 NVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhh
Confidence 333444444444433
No 240
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=26.47 E-value=2e+02 Score=34.16 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=26.9
Q ss_pred ceEEEecCCC--cceeEEEEeCCHHHHHHHHHHHHHHHh
Q 004803 89 LLTVLFPDGR--DGRAFTLKAETSEDLYEWKTALELALA 125 (729)
Q Consensus 89 ~~fvit~~~~--~grty~fqAeS~eE~~eWi~AL~~ai~ 125 (729)
.+|.|..... +-+.+.|.|.+.++++.|+..|+..+.
T Consensus 104 r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~ 142 (816)
T 3qr0_A 104 KCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAY 142 (816)
T ss_dssp HEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 4555544322 123458999999999999999998875
No 241
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.42 E-value=89 Score=21.87 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 004803 664 MDSKTRAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~ 689 (729)
|-.++.+||.+=.-||.+|.+|..-+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34678899999999999999987644
No 242
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=26.03 E-value=5.1e+02 Score=25.94 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhhHHHHH-H---HHH-Hhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 580 EELAIQRLEITKNDLRH-R---IAK-EARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~---~~~-~~~~n~~~~------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (729)
=+..+.+.+.-+.++.. + |.. -..|+..++ ..+..+...++.+-..|.+-+..-+.+|+....++....
T Consensus 145 v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~ 224 (326)
T 3kbt_A 145 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 224 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778777777654 2 211 011111122 235666777888877888888777777777665555332
Q ss_pred Hh------hCCCCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 649 VG------LSMSSGQFSS-SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 649 ~~------l~~~~~~~~~-~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
.+ +......++. ...=+..++++|.....+|.+|..++.+|..|...-.+
T Consensus 225 ~~~e~~~Wl~ek~~~L~~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~ 281 (326)
T 3kbt_A 225 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATR 281 (326)
T ss_dssp HHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0000001111 12223467888999999999999999999888654333
No 243
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.63 E-value=1.4e+02 Score=25.16 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
..|-.+|..++++|+.|++....|+--
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777766643
No 244
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.38 E-value=2.6e+02 Score=23.42 Aligned_cols=61 Identities=26% Similarity=0.236 Sum_probs=34.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAALE 648 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~-~e~~~~~~Le 648 (729)
|+.+=.+=.-||-.|.+-=-.|+.|... .+.++..|.+|.++..+|+.+.. -+..++..|-
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e----~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQE----VQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555554444445555443 44567778889999988876554 3445555553
No 245
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=25.28 E-value=2e+02 Score=22.77 Aligned_cols=55 Identities=27% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Q 004803 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQE 635 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~---~~~~~~~~~r~~Le~~V~~L~~ 635 (729)
|-.|--||....++++-++-..++=+-+...++ +|-..-++.=..||+.|.+|+.
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 556777899999999988754443333333333 2222222223336666666654
No 246
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.25 E-value=1e+02 Score=26.60 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004803 607 ILQASLERRKQALH---ERRLALEQDVSRLQEQLQAER 641 (729)
Q Consensus 607 ~~~~~~~~~~~~~~---~~r~~Le~~V~~L~~~L~~e~ 641 (729)
.|.+||++-|..-+ .+-.+|+-|+..|..+||+=.
T Consensus 50 tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 50 TLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889887776654 445668999999999888643
No 247
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.82 E-value=4e+02 Score=24.33 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKV 689 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~ 689 (729)
.+|-.++..|+..+.+||.++
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 248
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.54 E-value=82 Score=28.39 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 004803 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDA 710 (729)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~ 710 (729)
-.|..++.|+|.-|--+|.||++|++-|-.|-.+|.+.-|+...++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L 65 (125)
T 4g2k_A 17 KQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELL 65 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999999999999999998888776665443
No 249
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=24.16 E-value=2.9e+02 Score=22.64 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 004803 632 RLQEQLQAERDLR 644 (729)
Q Consensus 632 ~L~~~L~~e~~~~ 644 (729)
.|.++|+.|+-|.
T Consensus 43 ~lek~L~~E~~LK 55 (71)
T 1s1c_X 43 AFEKNINTERTLK 55 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777554
No 250
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.91 E-value=1e+02 Score=25.47 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 667 KTRAELEEIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
.++.|-.++..|+.++..|+++...|..+|.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777888888888777777774
No 251
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.66 E-value=1.9e+02 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=24.7
Q ss_pred HHHhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 599 AKEARGNAILQ---ASLERRKQALHERRLALEQDVSRLQEQLQAE 640 (729)
Q Consensus 599 ~~~~~~n~~~~---~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e 640 (729)
+|+..+++.++ .-|...|...++.+..|.+++..+++.+..|
T Consensus 168 ~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~~~~ 212 (213)
T 1ik9_A 168 AKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIKQE 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 44444444443 2335566666777777777777777766544
No 252
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.43 E-value=2.2e+02 Score=20.86 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004803 671 ELEEIALAEADVARLK 686 (729)
Q Consensus 671 ll~eia~~E~~v~~le 686 (729)
|-.|||-||.+|+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3345666666555433
No 253
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.35 E-value=93 Score=21.80 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 004803 665 DSKTRAELEEIALAEADVARLKQ 687 (729)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~ 687 (729)
-.|+.+||.+-.-+|.+|.+|..
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 45788888888888888888865
No 254
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.26 E-value=4.7e+02 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=26.2
Q ss_pred hhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 608 LQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (729)
Q Consensus 608 ~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~ 646 (729)
|+..+ ..+|......+..+++||+.|=..|=+|-+--.+
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa 104 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVA 104 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 2333444566788999999999888888765544
No 255
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.56 E-value=1.1e+02 Score=32.35 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (729)
..+.+.+|++++.+-.. .|.+ .+.+++.|-+.|..++..|.+|+++|..|..+
T Consensus 3 ~~~~~~~~~~~~~~~e~---~i~~--------------~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQ---IGVS--------------HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHH---HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHhc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777666321 1111 13344455555555555555555555555443
No 256
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.91 E-value=3.8e+02 Score=23.99 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (729)
|.++|++-|..-+.+-.+|+-|+..|..+||+
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555566666666555543
No 257
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.89 E-value=1.8e+02 Score=23.12 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004803 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (729)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (729)
+++..=..|.||..++++=|.+|...|.-||..+-
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667889999999999999999999998764
No 258
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.25 E-value=3.9e+02 Score=22.93 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=28.7
Q ss_pred hhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004803 603 RGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQ-AERDLRA 645 (729)
Q Consensus 603 ~~n~~~~~~-~~~~~~~~~~~r~~Le~~V~~L~~~L~-~e~~~~~ 645 (729)
+.||+=.+. ++...+...+++..+|+||..|+++++ -|.+|-.
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445543332 245566778889999999999999986 3444443
No 259
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.02 E-value=1.1e+02 Score=24.38 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 674 EIALAEADVARLKQKVAELHHQLN 697 (729)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~ 697 (729)
+++.|+.+-..|+.+|..|+.+|.
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555555443
No 260
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.58 E-value=3.6e+02 Score=28.83 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004803 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSS-GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (729)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~-~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (729)
-+++|..|+..++.++.- .-.+.. +.++ -....++++-+|..+.-..++|+.++.-|+.-|.+
T Consensus 328 k~~~v~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 391 (406)
T 4dyl_A 328 RQEMVTQLQQELRNEEEN------THPRERVQLLG----KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH------SCTTCGGGGHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhc------CCcchHHHHHh----HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 457888888888877421 001000 0010 11234677788888888888888888888877764
No 261
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.40 E-value=1.8e+02 Score=22.91 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 669 RAELEEIALAEADVARLKQKVA 690 (729)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~ 690 (729)
.+|-.+|+.|+.||.+|.+-+.
T Consensus 40 ~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 40 EALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666665544
No 262
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.18 E-value=4.6e+02 Score=23.24 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=43.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 004803 584 IQRLEITKNDLRHRIAKEARGNAILQASLER-------RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~-------~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~ 656 (729)
..||..-...++.+...--+.....|++|.+ .+..++.|--.|||.=.-|..+- |..-..|+.
T Consensus 12 ~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~---R~t~~SLeD------- 81 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK---RATIVSLED------- 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH---HHHHhhHHH-------
Confidence 4455555555555554433333333333322 23344555555666555555432 223333332
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHH
Q 004803 657 QFSSSRGMDSKTRAELEEIALAEADVA 683 (729)
Q Consensus 657 ~~~~~~~~~~~~~~ll~eia~~E~~v~ 683 (729)
+-.+--..|+..|+||.|+.
T Consensus 82 -------~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 82 -------FEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999975
No 263
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.14 E-value=74 Score=24.92 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004803 675 IALAEADVARLKQKVAELHHQL 696 (729)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l 696 (729)
|..||..|..||+.+..|+..|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777666544
No 264
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.02 E-value=1.6e+02 Score=35.84 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------HHhhCCCCCCCCCCCCCChhHHHHHHHHHH
Q 004803 608 LQASLERRKQALHERRLALEQDVSRLQE--QLQAERDLRAAL--------EVGLSMSSGQFSSSRGMDSKTRAELEEIAL 677 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~--~L~~e~~~~~~L--------e~~l~~~~~~~~~~~~~~~~~~~ll~eia~ 677 (729)
|+..-..=.++.++|..+|.+++.||++ +|.+...-.+.. +..|.. +. ....| ..+++++.....
T Consensus 856 L~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~s--~d--~g~dL-~~Vqal~KKhea 930 (1010)
T 1g8x_A 856 IDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGS--NE--TGDSI-TAVQAKLKNLEA 930 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSS--CC--SCCST-TTTGGGTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc--ccccH-HHHHHHHHHHHH
Confidence 3333344455677888888888777544 222222221111 122211 11 11222 345666666666
Q ss_pred HHHHHHHHHHHHH
Q 004803 678 AEADVARLKQKVA 690 (729)
Q Consensus 678 ~E~~v~~le~~~~ 690 (729)
+|++|..+|..|.
T Consensus 931 ~e~dl~a~e~ri~ 943 (1010)
T 1g8x_A 931 FDGECQSLEGQSN 943 (1010)
T ss_dssp HTTTTTHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666555
Done!