Query 004804
Match_columns 729
No_of_seqs 262 out of 1123
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 4E-137 9E-142 1146.4 52.4 615 1-728 1-617 (617)
2 PF03124 EXS: EXS family; Int 100.0 7.7E-80 1.7E-84 671.3 30.3 335 367-703 2-345 (345)
3 COG5409 EXS domain-containing 100.0 8.6E-65 1.9E-69 519.8 18.4 366 329-715 4-379 (384)
4 PF03105 SPX: SPX domain; Int 100.0 4.7E-31 1E-35 277.6 19.7 260 1-277 1-274 (275)
5 KOG1161 Protein involved in va 100.0 5.8E-31 1.3E-35 271.4 16.5 177 1-308 1-177 (310)
6 COG5036 SPX domain-containing 99.9 1E-22 2.2E-27 213.7 13.7 168 1-307 1-168 (509)
7 COG5408 SPX domain-containing 99.8 1.7E-19 3.7E-24 186.3 15.5 54 224-277 238-291 (296)
8 COG3872 Predicted metal-depend 53.1 1.3E+02 0.0029 31.6 10.4 75 387-490 171-245 (318)
9 TIGR00383 corA magnesium Mg(2+ 32.1 6.5E+02 0.014 26.9 13.6 29 232-260 176-204 (318)
10 KOG4460 Nuclear pore complex, 31.6 5.2E+02 0.011 30.2 11.6 35 114-148 607-644 (741)
11 PF14193 DUF4315: Domain of un 31.6 1.4E+02 0.003 25.9 5.8 34 112-149 4-37 (83)
12 PF05297 Herpes_LMP1: Herpesvi 31.2 16 0.00035 38.5 0.0 15 451-465 168-182 (381)
13 PF11120 DUF2636: Protein of u 28.4 92 0.002 25.5 3.9 34 456-489 9-42 (62)
14 PF10112 Halogen_Hydrol: 5-bro 27.0 6.4E+02 0.014 25.1 12.1 75 227-305 111-186 (199)
15 PRK00068 hypothetical protein; 26.7 5.3E+02 0.011 32.5 11.6 12 553-564 381-392 (970)
16 KOG4466 Component of histone d 23.8 1.3E+02 0.0029 31.8 5.0 43 106-148 14-56 (291)
17 PRK09546 zntB zinc transporter 22.4 9.9E+02 0.022 25.7 13.2 28 232-259 183-210 (324)
18 PF10777 YlaC: Inner membrane 21.9 6.2E+02 0.013 24.5 8.6 11 331-341 37-47 (155)
19 COG0598 CorA Mg2+ and Co2+ tra 20.2 1.1E+03 0.024 25.4 15.2 32 231-262 180-211 (322)
20 PF10267 Tmemb_cc2: Predicted 20.2 1.3E+03 0.028 26.1 16.7 12 381-392 380-391 (395)
21 PF15038 Jiraiya: Jiraiya 20.0 2.6E+02 0.0057 27.7 6.0 57 329-394 110-166 (175)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-137 Score=1146.37 Aligned_cols=615 Identities=56% Similarity=0.951 Sum_probs=548.3
Q ss_pred CCchhhhcccCChhhHHhccCchhHHHHHHHHHHHhhhhcccCccchhhhhhhhccccccCCCCCCCCCCCCcccchhhh
Q 004804 1 MKFGKEYASQMVPEWQEAYMNYDSLKTILKDIQRMKQRSRQNGGLKRAMTLYRAFSGLVQGQEKTPISPSKKDIESQYIL 80 (729)
Q Consensus 1 MKFgk~L~~~~VPEWr~~YIdYk~LKK~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 80 (729)
|||||+|++++||||+++||||+.|||+||++.+...+ + +
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~---------------------------------~--~----- 40 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPS---------------------------------S--E----- 40 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCC---------------------------------c--C-----
Confidence 99999999999999999999999999999998763211 0 0
Q ss_pred hcccCCCCCcchhhhhhhhhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004804 81 VNSVSKNGSESYETTFLKVAEEGGECEQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAFRIKVEKLQGVL 160 (729)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~~~~~~~~~~~~ 160 (729)
+++.....++.++.|..||+.||+||+|||+||.+|++|+.+|.+.|++|++.+.+.|.. ..
T Consensus 41 ------------~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~--~~---- 102 (617)
T KOG1162|consen 41 ------------ETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVK--SR---- 102 (617)
T ss_pred ------------ccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc----
Confidence 112222234456889999999999999999999999999999999999999999887532 00
Q ss_pred ccCCCCCchhhccccccCCCcCcchhhhcccccCCCCCCCCcccccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004804 161 QDSTQSEPVEQKQETTSSGIKSVPLEILGHVKLNKTFETPGSIIQNFVNVAGQTETFSRENLKKVEKQLKMAFVEFYLKL 240 (729)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~e~y~~l 240 (729)
++ ++.+ .+ .++....|+++ +++++++|+.|+.|+|..|
T Consensus 103 --------------~~--------------~~~~------~~-------~~~~~~~f~~~-~~~~e~~lk~af~Efy~~L 140 (617)
T KOG1162|consen 103 --------------SS--------------VDIS------DR-------AARLRGKFTKV-LRKAEEKLKLAFSEFYLKL 140 (617)
T ss_pred --------------cc--------------cccc------cc-------cchhhhhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00 00001135566 7888899999999999999
Q ss_pred HHhhhHHHhhHHHHHHHHHhhhhhcCCcccHHHHHHchhcCCCChHHHHHHHHHHHHHHHHHhcCCChhhhhhhcCCccc
Q 004804 241 RHLKSYSFLNILAFSKIMKKYDKITSRRASTSYMRMVDNSYLSISDEVTKLMERVEDTFIKHFSNSNRRKGMNNLRPKTK 320 (729)
Q Consensus 241 ~~L~~y~~LN~taf~KIlKK~dK~~~~~~~~~y~~~v~~~~f~~~~~l~~l~~~~e~ly~~~f~~g~~~~a~~~Lr~~~~ 320 (729)
.+||+|+.||.|||+||+|||||.++++. ..|++.|+.++|.+++++++|+.+||++|+++|++|||++||+.||++ +
T Consensus 141 ~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~fan~nr~~~m~~lr~~-~ 218 (617)
T KOG1162|consen 141 RLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHFANGNRRKAMKVLRPK-L 218 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhCCChhHhhhhcCCc-c
Confidence 99999999999999999999999999998 889999999999999999999999999999999999999999999999 8
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcCCCccee
Q 004804 321 KERHRISFSLGLFVGCSAALILALILIIHARGLLDKRGKTQYMENMFPLYSLFAFVVLHMLMYASNICFWRQYRVNYPFI 400 (729)
Q Consensus 321 ~~~~~~~f~~G~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~~~~~n~~~w~~~~INy~~I 400 (729)
++.|+.+|.+|+++||++++.++++.+++.++++... +..|+..++|+|+ ++++++++.++|+|+|+|+++||||++|
T Consensus 219 ~e~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy~fI 296 (617)
T KOG1162|consen 219 KEKHRPTFSTGFFVGCGIGLSVALVALIYLRNILQSE-QRFYMETMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNYKFI 296 (617)
T ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCceee
Confidence 8899999999999999999999999998888877765 7789999999998 9999999999999999999999999999
Q ss_pred ecccCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccCccchhhhhhhhhhHHHHHHHHHHHHhcccchhhhhHHHHHHH
Q 004804 401 FGFKQGTELGYREVLLVSFCLAALALTSVLSNLDMEMNPKTKEYEALTELLPLGLVLLVIIVLICPFNIIYRSSRFFFLA 480 (729)
Q Consensus 401 f~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~l~~P~~~~~~~~R~~~l~ 480 (729)
||+++++++++++++++++..++++.++++.++++..++.. ++++|+++++++++++++|++++|+++|+|+++
T Consensus 297 f~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~~~------~~~~Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~ 370 (617)
T KOG1162|consen 297 FEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSGQT------TELSPLILLLLFFFLLVCPFNTFYRSSRFWLLK 370 (617)
T ss_pred ecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCCCC------cccchHHHHHHHHheeeccchhhhHhhHHHHHH
Confidence 99999999999999999999999999999999887765432 478999999999999999999999999999999
Q ss_pred HhHHhhcccccccccchhhHHHhHhhHHHhhhhhhhhheeeecCCCccCCCcccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 004804 481 SLFHCICAPLYKVALQDFFLADQLTSQVQAIRSLEFYICYYGWGDYKQRQNTCKSSGVYNTFYFIVAVIPYWSRFLQCLR 560 (729)
Q Consensus 481 ~l~r~~~~p~~~V~F~df~laD~ltSl~~~l~D~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClr 560 (729)
+++||+.+|+++|.|.|||+|||+||++.+++|+++++|+|++|++..++ .|..++.+..+.++++++|+|+|++||+|
T Consensus 371 ~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~~~~~~~-~~~~~~~~~~~~~iva~lP~~~RfLQClR 449 (617)
T KOG1162|consen 371 RLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTGDFQARR-TCYCKDDYIEFQSIVAVLPYWFRFLQCLR 449 (617)
T ss_pred HHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeeccccccccc-ccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776544 66666667778899999999999999999
Q ss_pred HhhhcCCCchhhhHHHHHHHHHHHHHHHhhhccCCc-hhHHHHHHHHHHhhHHHHHhHhhhhccCcccCCCCcccccccc
Q 004804 561 RLCEEKDPMQGYNGLKYLATIIAITTRTAYSLYMGF-SWKIISGIFSAIATIYGTYWDLVVDWGLLQRQSKNRWLRDKLL 639 (729)
Q Consensus 561 ry~dt~~~~hl~Na~KY~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ins~ys~~WDv~mDW~l~~~~~~~~~LR~~l~ 639 (729)
||.|++..+||+||+||++++++++++++|+..++. .|+++|++++.+||+|+++||++|||||+.++++ ||||++++
T Consensus 450 R~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~~~-~~lRd~l~ 528 (617)
T KOG1162|consen 450 RYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGSSLWFALWILSSKVASLYTTYWDVVMDWGLLNRKSK-PWLRDNLL 528 (617)
T ss_pred HHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHheecccccccCc-hhhHHHhc
Confidence 999998899999999999999999999999998885 9999999999999999999999999999999988 99999999
Q ss_pred cCCCchhhHHHHHhhHHHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHhhhceeeeeehhhhhhccCCceeccccCCCC
Q 004804 640 IPSKSVYFAAIVLNVLLRFAWLQTVLNIQ-FSFLHRQTLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPF 718 (729)
Q Consensus 640 y~~~~~Yy~ai~~n~~lRf~W~~~~~~~~-~~~~~~~~~~~~~~~lEi~RR~~W~~fRvEnEhi~N~~~fra~~~iplp~ 718 (729)
||++++||+||+.|++||++|++.++... .... .+..+++++.+||+||++||||||||||+||||+|||+++||+|+
T Consensus 529 ~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~-~~~~~~i~a~LEIiRRfiWnfFRLEnEhlnN~g~fRa~~~v~l~~ 607 (617)
T KOG1162|consen 529 YPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFL-SDSMVFIMALLEIIRRFIWNFFRLENEHLNNVGKFRAFRDVPLPF 607 (617)
T ss_pred ccchheehhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccccccCCchh
Confidence 99999999999999999999987665322 2222 677889999999999999999999999999999999999999999
Q ss_pred cCCCcccccC
Q 004804 719 TYCEEDEDHN 728 (729)
Q Consensus 719 ~~~~~~~~~~ 728 (729)
+..+++|.|+
T Consensus 608 ~~~~~~d~~~ 617 (617)
T KOG1162|consen 608 SYMDESDKVS 617 (617)
T ss_pred hhcccccCCC
Confidence 9998888774
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=7.7e-80 Score=671.29 Aligned_cols=335 Identities=42% Similarity=0.729 Sum_probs=296.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhcCCCcceeecccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccc-Cccchhhh
Q 004804 367 FPLYSLFAFVVLHMLMYASNICFWRQYRVNYPFIFGFKQGTELGYREVLLVSFCLAALALTSVLSNLDMEM-NPKTKEYE 445 (729)
Q Consensus 367 ~pl~~~~~l~~l~~~~~~~n~~~w~~~~INy~~If~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~ 445 (729)
+|+||+++++++++|+||+|+++|+++||||++|||+|+++++++++++.+++++++++.++++.++.... +.......
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 57899999999999999999999999999999999999999999999999988888777766665543321 11111111
Q ss_pred hhhhhhHHHHHHHHHHHHhcccchhhhhHHHHHHHHhHHhhcccccccccchhhHHHhHhhHHHhhhhhhhhheeeecCC
Q 004804 446 ALTELLPLGLVLLVIIVLICPFNIIYRSSRFFFLASLFHCICAPLYKVALQDFFLADQLTSQVQAIRSLEFYICYYGWGD 525 (729)
Q Consensus 446 ~~~~~~Pl~~~~~~~~~l~~P~~~~~~~~R~~~l~~l~r~~~~p~~~V~F~df~laD~ltSl~~~l~D~~~~~c~~~~~~ 525 (729)
...+++|+++++++++++++|++++++++|+|++++++|++.+|+.+|+|+|||+||||||++++++|+++++|+|..+.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 12358999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CccCCCcccCCCcchhhHHHHHhhhhHHHHHHHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHHhhhccCCch----hHH
Q 004804 526 YKQRQNTCKSSGVYNTFYFIVAVIPYWSRFLQCLRRLCEEKDP-MQGYNGLKYLATIIAITTRTAYSLYMGFS----WKI 600 (729)
Q Consensus 526 ~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClrry~dt~~~-~hl~Na~KY~~~~~~~~~~~~~~~~~~~~----~~~ 600 (729)
..+.+++|++.+.+. .++++++|++||++||+|||+||++. +||+||+||++++++++++..++.+.+.. +..
T Consensus 162 ~~~~~~~c~~~~~~~--~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (345)
T PF03124_consen 162 FTSPSNQCGSSSWYI--DPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLFI 239 (345)
T ss_pred ccCCCCcCccccHhH--HhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 555678999876543 48999999999999999999999999 99999999999999999988877765533 678
Q ss_pred HHHHHHHHhhHHHHHhHhhhhccCcccC--CCCcccccccccCCCchhhHHHHHhhHHHHHHHHHhhhcccc-ccchhHH
Q 004804 601 ISGIFSAIATIYGTYWDLVVDWGLLQRQ--SKNRWLRDKLLIPSKSVYFAAIVLNVLLRFAWLQTVLNIQFS-FLHRQTL 677 (729)
Q Consensus 601 ~~~~~~~ins~ys~~WDv~mDW~l~~~~--~~~~~LR~~l~y~~~~~Yy~ai~~n~~lRf~W~~~~~~~~~~-~~~~~~~ 677 (729)
+|++++++||+||++|||+|||||++++ +++++||++++||+|++||+||+.|+++||+|++++++.+.. ..+.+.+
T Consensus 240 ~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~ 319 (345)
T PF03124_consen 240 LWIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHIDNSEIF 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 8999999999999999999999999987 789999999999999999999999999999999998865533 3467888
Q ss_pred HHHHHHHHHHhhhceeeeeehhhhhh
Q 004804 678 ITIVASLEIIRRGIWNFFRLENEHLN 703 (729)
Q Consensus 678 ~~~~~~lEi~RR~~W~~fRvEnEhi~ 703 (729)
.++++++||+||++||||||||||+|
T Consensus 320 ~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 320 IFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred HHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 99999999999999999999999986
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-65 Score=519.80 Aligned_cols=366 Identities=28% Similarity=0.420 Sum_probs=285.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccccchh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcCCCcceeecccCCC
Q 004804 329 SLGLFVGCSAALILALILIIHARGLLDKRGKTQY-MENMFPLYSLFAFVVLHMLMYASNICFWRQYRVNYPFIFGFKQGT 407 (729)
Q Consensus 329 ~~G~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~pl~~~~~l~~l~~~~~~~n~~~w~~~~INy~~If~~~~~~ 407 (729)
++|+-.|.++++...+..++ +..++..+ ..-++++|.++.+..+...++.+++|+|.|.+|||++||+++..+
T Consensus 4 vv~~~~g~~l~l~~~i~~l~------~~~~~~~~~~~ill~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~ 77 (384)
T COG5409 4 VVGLEKGVSLSLGLYIQNLL------NVGEPQSFIVLILLALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLS 77 (384)
T ss_pred eeeeeccccccHHHHHHHhe------eCCchHHHHHHHHHHHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhh
Confidence 35777777766655444433 32222223 345678888888888888899999999999999999999987754
Q ss_pred c----chhHHHHHHHHHHHHHHHHHHHHhhccc-cCccchhhhhhhhhhHHHHHHHHHHHHhcccchhhhhHHHHHHHHh
Q 004804 408 E----LGYREVLLVSFCLAALALTSVLSNLDME-MNPKTKEYEALTELLPLGLVLLVIIVLICPFNIIYRSSRFFFLASL 482 (729)
Q Consensus 408 ~----l~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~Pl~~~~~~~~~l~~P~~~~~~~~R~~~l~~l 482 (729)
. ...+.... .....++.++++.++... ++... .....++|+++++++..++++|+++.++.+|+|++.++
T Consensus 78 ~~a~~~~~dfh~~--~i~~~~~~~slfiFl~~v~g~~~~---l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sl 152 (384)
T COG5409 78 STARNFNLDFHRI--IIPFHFFTTSLFIFLNAVEGLKFI---LLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESL 152 (384)
T ss_pred hhhcccchhhHHH--hhhHHHHHHHHHHHHHHhhccccc---eehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHH
Confidence 3 33222221 111222222222222111 11101 12346789999999999999999999999999999999
Q ss_pred HHhhcccccccccchhhHHHhHhhHHHhhhhhhhhheeeecCCCccCCCcccCCCcchhhHHHHHhhhhHHHHHHHHHHh
Q 004804 483 FHCICAPLYKVALQDFFLADQLTSQVQAIRSLEFYICYYGWGDYKQRQNTCKSSGVYNTFYFIVAVIPYWSRFLQCLRRL 562 (729)
Q Consensus 483 ~r~~~~p~~~V~F~df~laD~ltSl~~~l~D~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClrry 562 (729)
.|++.+|+.+|+|+||++||++||++++++|+.++.|+|..-. . .+ -|++++.. +.++++++|.++|++||||||
T Consensus 153 iRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~~-~-~p-Lc~sshs~--~~g~~~~lP~ivR~lQCLRry 227 (384)
T COG5409 153 IRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLLF-R-EP-LCKSSHSD--LSGLAALLPVIVRFLQCLRRY 227 (384)
T ss_pred HHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhhc-c-cc-ccccCCcc--hHhHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997421 1 12 58887753 467899999999999999999
Q ss_pred hhcCCC-chhhhHHHHHHHHHHHHHHHhhhccCC-chhHHHHHHHHHHhhHHHHHhHhhhhccCcccCCCC-cccccccc
Q 004804 563 CEEKDP-MQGYNGLKYLATIIAITTRTAYSLYMG-FSWKIISGIFSAIATIYGTYWDLVVDWGLLQRQSKN-RWLRDKLL 639 (729)
Q Consensus 563 ~dt~~~-~hl~Na~KY~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ins~ys~~WDv~mDW~l~~~~~~~-~~LR~~l~ 639 (729)
+|+++. +||.||+||++++++..+..+|+..++ ...+.++++++.+||+||+.|||.|||++..+.++. +-.|++++
T Consensus 228 ~ds~~~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~ 307 (384)
T COG5409 228 RDSLHEFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTL 307 (384)
T ss_pred HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHHHHHHHHHHHHhHHhheeeeecccccchhccccchhH
Confidence 999765 999999999999999999899998874 456678888999999999999999999998776544 56777766
Q ss_pred cCCCchhhHHHHHhhHHHHHHHHHhhhccccccc-hhHHHHHHHHHHHHhhhceeeeeehhhhhhccCCceeccccC
Q 004804 640 IPSKSVYFAAIVLNVLLRFAWLQTVLNIQFSFLH-RQTLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVP 715 (729)
Q Consensus 640 y~~~~~Yy~ai~~n~~lRf~W~~~~~~~~~~~~~-~~~~~~~~~~lEi~RR~~W~~fRvEnEhi~N~~~fra~~~ip 715 (729)
++ |++||++|+++|++|+++..+.+. ..| .+...++++++||+|||+|++||||+||.+|+..+|+.++.+
T Consensus 308 l~----y~~a~~inFllR~~Wi~~~~~~~~-~~~~~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n~~~~~~~~~~~ 379 (384)
T COG5409 308 LK----YHIAMIINFLLRFSWIVYYLPPNH-IQHSADIFIFIMQLLEILRRFVWVFFRVEAEHSINFASFRAAGELK 379 (384)
T ss_pred HH----HHHHHHHHHHHHHHHHHhhcchhh-hhhhhhhHHHHHHHHHHHHhheeeEEEeehHHHhhHHHhhhcccCC
Confidence 54 899999999999999998875442 233 333348999999999999999999999999999999999998
No 4
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.97 E-value=4.7e-31 Score=277.61 Aligned_cols=260 Identities=30% Similarity=0.395 Sum_probs=140.3
Q ss_pred CCchhhhcccCChhhHHhccCchhHHHHHHHHHHHhhhhcccCc-cc-hhhhhhhhccccccCCCCCCCCCCCCcccchh
Q 004804 1 MKFGKEYASQMVPEWQEAYMNYDSLKTILKDIQRMKQRSRQNGG-LK-RAMTLYRAFSGLVQGQEKTPISPSKKDIESQY 78 (729)
Q Consensus 1 MKFgk~L~~~~VPEWr~~YIdYk~LKK~Ik~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 78 (729)
|||||+|+.++||||+++||||+.|||+||+++.........+. .. ........ ..+.......++ ...+ ..
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~-~~ 74 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSS----SSSRSSSNSFES-TSPS-SS 74 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhh----cccccccccccc-cccc-cc
Confidence 99999999999999999999999999999999876544321000 00 00000000 000000000000 0000 00
Q ss_pred hhhcccCCCCCcchhhhhhhhhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h
Q 004804 79 ILVNSVSKNGSESYETTFLKVAEEGGECEQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAFRIKVEKL-Q 157 (729)
Q Consensus 79 l~~~~~~~~g~~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~~~~~~~~-~ 157 (729)
...+...... ........+..|+..|+.||+|||+||.++++|+.++++.|+.|+..+...+...... .
T Consensus 75 -----~~~~~~~~~~-----~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~ 144 (275)
T PF03105_consen 75 -----NTSPSSSNSE-----QNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYN 144 (275)
T ss_pred -----cccccccccc-----hhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 0000000000 0011234788999999999999999999999999999999999999997764321110 0
Q ss_pred c----ccccCCCCC-ch-hhcccccc----CCCcCcchhhhcccccCCCCCCCCcccc-cccccCCcchhhhhHHHHHHH
Q 004804 158 G----VLQDSTQSE-PV-EQKQETTS----SGIKSVPLEILGHVKLNKTFETPGSIIQ-NFVNVAGQTETFSRENLKKVE 226 (729)
Q Consensus 158 ~----~~~~~~~~~-~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 226 (729)
. ....++... +. .....+.. ................+.....+..... ......... ......+..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 223 (275)
T PF03105_consen 145 WNQSSQLSSSSNIFSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFL-SSSQKSLKKAR 223 (275)
T ss_pred cccchhhccccccccCccccccCCccccccccccccchhhhhhccCCCCccccccccccccccccccc-ccchhhHHHHH
Confidence 0 000000000 00 00000000 0000000000000000000000000000 000000000 12233455667
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHhhhhhcCCcccHHHHHHc
Q 004804 227 KQLKMAFVEFYLKLRHLKSYSFLNILAFSKIMKKYDKITSRRASTSYMRMV 277 (729)
Q Consensus 227 ~~L~~~~~e~y~~l~~L~~y~~LN~taf~KIlKK~dK~~~~~~~~~y~~~v 277 (729)
..|++++.++|++|.+|++|+.||+|||+||||||||++++..+..||+.|
T Consensus 224 ~~l~~~~~e~y~~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 224 KQLKKAFIELYRELELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 899999999999999999999999999999999999999999999999864
No 5
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.8e-31 Score=271.40 Aligned_cols=177 Identities=28% Similarity=0.436 Sum_probs=149.0
Q ss_pred CCchhhhcccCChhhHHhccCchhHHHHHHHHHHHhhhhcccCccchhhhhhhhccccccCCCCCCCCCCCCcccchhhh
Q 004804 1 MKFGKEYASQMVPEWQEAYMNYDSLKTILKDIQRMKQRSRQNGGLKRAMTLYRAFSGLVQGQEKTPISPSKKDIESQYIL 80 (729)
Q Consensus 1 MKFgk~L~~~~VPEWr~~YIdYk~LKK~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 80 (729)
|||||+|++...|||+++|||||.|||.||+..... +++ ..
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~-------------------------------~~~--~~------ 41 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQT-------------------------------ADS--SP------ 41 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhcccc-------------------------------ccC--Cc------
Confidence 999999999999999999999999999999863210 000 00
Q ss_pred hcccCCCCCcchhhhhhhhhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004804 81 VNSVSKNGSESYETTFLKVAEEGGECEQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAFRIKVEKLQGVL 160 (729)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~~~~~~~~~~~~ 160 (729)
....|..|++.||+||+||+.||.+|++|+..|+..|++|.+. .. .
T Consensus 42 ----------------------~~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~--~~-----~----- 87 (310)
T KOG1161|consen 42 ----------------------DSRDESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA--LS-----L----- 87 (310)
T ss_pred ----------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc-----c-----
Confidence 0125889999999999999999999999999999999998864 00 0
Q ss_pred ccCCCCCchhhccccccCCCcCcchhhhcccccCCCCCCCCcccccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004804 161 QDSTQSEPVEQKQETTSSGIKSVPLEILGHVKLNKTFETPGSIIQNFVNVAGQTETFSRENLKKVEKQLKMAFVEFYLKL 240 (729)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~e~y~~l 240 (729)
+ . | + ..++ ..|++++.++..++
T Consensus 88 ---------------------------------~-~---~-~-------------------~~~~-~~lr~~l~~~~~em 109 (310)
T KOG1161|consen 88 ---------------------------------E-P---P-S-------------------AEEM-KELREELVDFHGEM 109 (310)
T ss_pred ---------------------------------C-C---c-c-------------------hhHH-HHHHHHHHHHHHHH
Confidence 0 0 0 0 0122 57889999999999
Q ss_pred HHhhhHHHhhHHHHHHHHHhhhhhcCCcccHHHHHHchhcCCCChHHHHHHHHHHHHHHHHHhcCCCh
Q 004804 241 RHLKSYSFLNILAFSKIMKKYDKITSRRASTSYMRMVDNSYLSISDEVTKLMERVEDTFIKHFSNSNR 308 (729)
Q Consensus 241 ~~L~~y~~LN~taf~KIlKK~dK~~~~~~~~~y~~~v~~~~f~~~~~l~~l~~~~e~ly~~~f~~g~~ 308 (729)
.+|.+|++||+|||+||||||||++|......|..++..+||++.+.+.+|+.+++.+|...+..++.
T Consensus 110 ~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~ 177 (310)
T KOG1161|consen 110 VLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLVYEISILLDLLRPSNRN 177 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCchhhhHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999888999999999999999999999999999999999887654
No 6
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1e-22 Score=213.66 Aligned_cols=168 Identities=26% Similarity=0.392 Sum_probs=138.0
Q ss_pred CCchhhhcccCChhhHHhccCchhHHHHHHHHHHHhhhhcccCccchhhhhhhhccccccCCCCCCCCCCCCcccchhhh
Q 004804 1 MKFGKEYASQMVPEWQEAYMNYDSLKTILKDIQRMKQRSRQNGGLKRAMTLYRAFSGLVQGQEKTPISPSKKDIESQYIL 80 (729)
Q Consensus 1 MKFgk~L~~~~VPEWr~~YIdYk~LKK~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 80 (729)
|+||+.|+++..|+|++.||||..|||.||+-.. + +
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~~---~---------------------------------~-------- 36 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESEE---E---------------------------------G-------- 36 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhccc---c---------------------------------C--------
Confidence 9999999999999999999999999999998110 0 0
Q ss_pred hcccCCCCCcchhhhhhhhhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004804 81 VNSVSKNGSESYETTFLKVAEEGGECEQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAFRIKVEKLQGVL 160 (729)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~~~~~~~~~~~~ 160 (729)
.|. +++|..|.+.||+||+||..|...|.+|..+|+..|++|..+-....
T Consensus 37 --------------~w~------e~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~~---------- 86 (509)
T COG5036 37 --------------SWS------ESDESDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQEL---------- 86 (509)
T ss_pred --------------CCc------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhcc----------
Confidence 121 25688999999999999999999999999999999999987322110
Q ss_pred ccCCCCCchhhccccccCCCcCcchhhhcccccCCCCCCCCcccccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004804 161 QDSTQSEPVEQKQETTSSGIKSVPLEILGHVKLNKTFETPGSIIQNFVNVAGQTETFSRENLKKVEKQLKMAFVEFYLKL 240 (729)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~e~y~~l 240 (729)
+ +. .+ .+.+.|...+.
T Consensus 87 ----------------------------d---------------------s~---~~------------~~~LeE~L~~v 102 (509)
T COG5036 87 ----------------------------D---------------------SD---NF------------PKILEEELDTV 102 (509)
T ss_pred ----------------------------c---------------------CC---cc------------hhHHHHHHHHH
Confidence 0 00 00 01233444488
Q ss_pred HHhhhHHHhhHHHHHHHHHhhhhhcCCcccHHHHHHchhcCCCChHHHHHHHHHHHHHHHHHhcCCC
Q 004804 241 RHLKSYSFLNILAFSKIMKKYDKITSRRASTSYMRMVDNSYLSISDEVTKLMERVEDTFIKHFSNSN 307 (729)
Q Consensus 241 ~~L~~y~~LN~taf~KIlKK~dK~~~~~~~~~y~~~v~~~~f~~~~~l~~l~~~~e~ly~~~f~~g~ 307 (729)
..|.+|.+||+|||.||+|||||+++..+.+.|..++...||+ ++..+.|+.+++.||....++|+
T Consensus 103 ~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrLk~~p~~-se~yd~Ll~kis~LY~~lR~~~~ 168 (509)
T COG5036 103 HDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRLKAKPFF-SEQYDPLLYKISSLYNILRSSLS 168 (509)
T ss_pred HHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHhccCCcc-hhhhcHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998899998889999985 58999999999999999988887
No 7
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-19 Score=186.32 Aligned_cols=54 Identities=39% Similarity=0.568 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHhhhhhcCCcccHHHHHHc
Q 004804 224 KVEKQLKMAFVEFYLKLRHLKSYSFLNILAFSKIMKKYDKITSRRASTSYMRMV 277 (729)
Q Consensus 224 ~~~~~L~~~~~e~y~~l~~L~~y~~LN~taf~KIlKK~dK~~~~~~~~~y~~~v 277 (729)
+.+..+++++.++|..|..|++|++||+|||+||+|||||.+++++...||+..
T Consensus 238 q~R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~ 291 (296)
T COG5408 238 QKRSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRS 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999999763
No 8
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=53.08 E-value=1.3e+02 Score=31.55 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=45.1
Q ss_pred HHHHhhcCCCcceeecccCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccCccchhhhhhhhhhHHHHHHHHHHHHhcc
Q 004804 387 ICFWRQYRVNYPFIFGFKQGTELGYREVLLVSFCLAALALTSVLSNLDMEMNPKTKEYEALTELLPLGLVLLVIIVLICP 466 (729)
Q Consensus 387 ~~~w~~~~INy~~If~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~l~~P 466 (729)
-.+++.+|-.++.|+....+-+++...+=.-+. .+|.- -+..+-+.+++.++++++.|
T Consensus 171 kRVFQYHGAEHk~I~~YE~~leLTpenvqk~Sr-----------------lHpRC-----GtsFl~~~~iV~i~v~slv~ 228 (318)
T COG3872 171 KRVFQYHGAEHKVINCYENGLELTPENVQKQSR-----------------LHPRC-----GTSFLLFTMIVGIFVYSLVP 228 (318)
T ss_pred HHHHHhcCccceeEeeeccCCcCChhHhhhhcc-----------------ccccc-----CchhhHHHHHHHHHHHHhcc
Confidence 468999999999999988877776533221110 00000 00111223344456667778
Q ss_pred cchhhhhHHHHHHHHhHHhhcccc
Q 004804 467 FNIIYRSSRFFFLASLFHCICAPL 490 (729)
Q Consensus 467 ~~~~~~~~R~~~l~~l~r~~~~p~ 490 (729)
++ ...+|.+.|+++-|+
T Consensus 229 ~~-------~lw~Rvv~RiiLlPv 245 (318)
T COG3872 229 FD-------NLWLRVVDRIILLPV 245 (318)
T ss_pred cc-------cHHHHHHHHHHHHHH
Confidence 77 234789999988775
No 9
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=32.14 E-value=6.5e+02 Score=26.86 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhHHHhhHHHHHHHHHh
Q 004804 232 AFVEFYLKLRHLKSYSFLNILAFSKIMKK 260 (729)
Q Consensus 232 ~~~e~y~~l~~L~~y~~LN~taf~KIlKK 260 (729)
.+..+-+++..|++...-|...+.++.+.
T Consensus 176 ~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 176 EILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455566667777778888888887653
No 10
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.63 E-value=5.2e+02 Score=30.21 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 114 LDDEFNKV---DKFYRTKVKEVIAEAQSLSQQMDALIA 148 (729)
Q Consensus 114 Ld~EL~KV---n~FY~~Ke~E~~~r~~~L~~ql~~l~~ 148 (729)
+++|.++| ..|-.++.+|+.+|-+.|+..++++..
T Consensus 607 ~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 607 CREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44444444 467778888888888888888877653
No 11
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.57 E-value=1.4e+02 Score=25.94 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 112 RRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAF 149 (729)
Q Consensus 112 ~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~ 149 (729)
..+++|++|.. .|.+|+..|+..|+.|..+..+.
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999986 79999999999999999887665
No 12
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=31.22 E-value=16 Score=38.52 Aligned_cols=15 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhc
Q 004804 451 LPLGLVLLVIIVLIC 465 (729)
Q Consensus 451 ~Pl~~~~~~~~~l~~ 465 (729)
.-+.|+++++.+++|
T Consensus 168 ~dL~WL~LFlaiLIW 182 (381)
T PF05297_consen 168 VDLYWLLLFLAILIW 182 (381)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555554
No 13
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=28.43 E-value=92 Score=25.47 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHhHHhhccc
Q 004804 456 VLLVIIVLICPFNIIYRSSRFFFLASLFHCICAP 489 (729)
Q Consensus 456 ~~~~~~~l~~P~~~~~~~~R~~~l~~l~r~~~~p 489 (729)
++++.++++.|.....+++..+..+++.+.+.+|
T Consensus 9 ii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~P 42 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRWLPRIRRTLRRRLFPP 42 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 3444556777888776666666778888887777
No 14
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.99 E-value=6.4e+02 Score=25.13 Aligned_cols=75 Identities=12% Similarity=0.263 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHhhhhhcCCcccHHHHHH-chhcCCCChHHHHHHHHHHHHHHHHHhcC
Q 004804 227 KQLKMAFVEFYLKLRHLKSYSFLNILAFSKIMKKYDKITSRRASTSYMRM-VDNSYLSISDEVTKLMERVEDTFIKHFSN 305 (729)
Q Consensus 227 ~~L~~~~~e~y~~l~~L~~y~~LN~taf~KIlKK~dK~~~~~~~~~y~~~-v~~~~f~~~~~l~~l~~~~e~ly~~~f~~ 305 (729)
+.+-+.+.+-=..+...++|..-=.-+..|++.||......+....-... .++ ..+.++.+....++.|.+.+.+
T Consensus 111 ~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e----~~~~L~~l~~~f~~~~~~l~~~ 186 (199)
T PF10112_consen 111 RRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEE----IEETLDTLNQAFEKDLDKLLED 186 (199)
T ss_pred HHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556667777888888888999999999886654332221111 111 1345667777777777776653
No 15
>PRK00068 hypothetical protein; Validated
Probab=26.68 E-value=5.3e+02 Score=32.53 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhh
Q 004804 553 SRFLQCLRRLCE 564 (729)
Q Consensus 553 ~R~~QClrry~d 564 (729)
.|=+|-+|.||+
T Consensus 381 ~~QlQq~R~YY~ 392 (970)
T PRK00068 381 FTQVQQIRNFYG 392 (970)
T ss_pred HHHHHhccCcee
Confidence 688899998875
No 16
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=23.78 E-value=1.3e+02 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 106 CEQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIA 148 (729)
Q Consensus 106 ~e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~ 148 (729)
.+..++...+.-.+--+.|+..|++.+.+|+..|+.||+++.+
T Consensus 14 ~drrr~~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~ 56 (291)
T KOG4466|consen 14 KDRRRANEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQ 56 (291)
T ss_pred HHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555444444444779999999999999999999998754
No 17
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.41 E-value=9.9e+02 Score=25.72 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhHHHhhHHHHHHHHH
Q 004804 232 AFVEFYLKLRHLKSYSFLNILAFSKIMK 259 (729)
Q Consensus 232 ~~~e~y~~l~~L~~y~~LN~taf~KIlK 259 (729)
.+.++-+++..|++...-|...+.++.+
T Consensus 183 ~l~~lrr~l~~lrr~l~p~~~~l~~L~~ 210 (324)
T PRK09546 183 ELALLRKQLIVMRRYMAPQRDVFARLAS 210 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677778888888888888875
No 18
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.95 E-value=6.2e+02 Score=24.51 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=7.2
Q ss_pred hHHHHHHHHHH
Q 004804 331 GLFVGCSAALI 341 (729)
Q Consensus 331 G~~~G~~~~l~ 341 (729)
|+++||.++-+
T Consensus 37 ~L~~~M~~~y~ 47 (155)
T PF10777_consen 37 YLCLAMYAAYL 47 (155)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 19
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.23 E-value=1.1e+03 Score=25.43 Aligned_cols=32 Identities=9% Similarity=-0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHHHhhh
Q 004804 231 MAFVEFYLKLRHLKSYSFLNILAFSKIMKKYD 262 (729)
Q Consensus 231 ~~~~e~y~~l~~L~~y~~LN~taf~KIlKK~d 262 (729)
..+.++.+.+..+++...-+..++.++.+...
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~ 211 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPL 211 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCc
Confidence 55667777788888888888888888887764
No 20
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.16 E-value=1.3e+03 Score=26.11 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhh
Q 004804 381 LMYASNICFWRQ 392 (729)
Q Consensus 381 ~~~~~n~~~w~~ 392 (729)
+++++-+++|++
T Consensus 380 ~~v~l~~~~~~~ 391 (395)
T PF10267_consen 380 LLVGLGAILWQN 391 (395)
T ss_pred HHHHHHHHHHhc
Confidence 344555666764
No 21
>PF15038 Jiraiya: Jiraiya
Probab=20.01 E-value=2.6e+02 Score=27.75 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcC
Q 004804 329 SLGLFVGCSAALILALILIIHARGLLDKRGKTQYMENMFPLYSLFAFVVLHMLMYASNICFWRQYR 394 (729)
Q Consensus 329 ~~G~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~~~~~n~~~w~~~~ 394 (729)
..++|+|+.+.+...+++.+..-.. .+ ...-.+..+.+.+++..++ .-|+|.|+|..
T Consensus 110 ~~~ff~sI~vfl~~l~ly~~l~f~~--~~------~~~~s~ilG~g~vfl~~~~-vh~l~~w~r~~ 166 (175)
T PF15038_consen 110 VGLFFCSISVFLAALILYMLLQFHS--EP------GIATSIILGSGAVFLGAAM-VHNLYRWQRET 166 (175)
T ss_pred hhhHHhhhhHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 4677888777654444443211000 00 0112234555665554444 88999999864
Done!