Query 004804
Match_columns 729
No_of_seqs 262 out of 1123
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pp5_A BRK1, protein brick1; t 48.7 74 0.0025 25.7 7.6 43 107-149 18-60 (73)
2 3p8c_E Probable protein brick1 44.2 78 0.0027 25.7 7.1 43 107-149 18-60 (75)
3 2akf_A Coronin-1A; coiled coil 33.2 1E+02 0.0035 20.2 4.9 28 113-144 3-30 (32)
4 2l5g_B Putative uncharacterize 30.1 87 0.003 22.4 4.6 29 109-141 9-37 (42)
5 2l2r_A Antimicrobial peptide e 29.1 16 0.00055 24.9 0.7 10 556-565 9-18 (37)
6 4hkr_A Calcium release-activat 26.0 4.6E+02 0.016 25.4 11.3 16 328-343 31-46 (214)
7 2xus_A Breast cancer metastasi 20.0 2.1E+02 0.0073 21.2 5.3 33 116-148 13-46 (49)
8 3t98_B Nucleoporin NUP58/NUP45 19.4 4.1E+02 0.014 22.3 11.4 28 122-149 7-34 (93)
9 2p2u_A HOST-nuclease inhibitor 17.8 2.2E+02 0.0076 26.6 6.5 43 107-149 32-74 (171)
10 4ev6_A Magnesium transport pro 15.8 6.4E+02 0.022 25.8 10.3 32 232-263 198-229 (339)
No 1
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=48.67 E-value=74 Score=25.70 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 107 EQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAF 149 (729)
Q Consensus 107 e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~ 149 (729)
.++|.+.+...+.|+.+|-..=..-+..|+..++.+|+.++..
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~ 60 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQ 60 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999888888888888888777776543
No 2
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=44.16 E-value=78 Score=25.71 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 107 EQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAF 149 (729)
Q Consensus 107 e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~ 149 (729)
.++|.+.+..-+.|+.+|-..=..-+..|+..|+.+|..+++.
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~ 60 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888888888888888777776553
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.21 E-value=1e+02 Score=20.18 Aligned_cols=28 Identities=11% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 113 RLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMD 144 (729)
Q Consensus 113 ~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~ 144 (729)
.|++|+.|.+.-. .|+.+|++.|++.++
T Consensus 3 rlee~~r~l~~iv----q~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIV----QKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 4778888887654 456777777777654
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.07 E-value=87 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004804 109 EYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQ 141 (729)
Q Consensus 109 ~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ 141 (729)
+=+..+|+|++|+. +|.+++..|...|++
T Consensus 9 qkI~kVdrEI~Kte----~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVE----QQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 44567888888875 366666666665554
No 5
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=29.07 E-value=16 Score=24.86 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=8.4
Q ss_pred HHHHHHhhhc
Q 004804 556 LQCLRRLCEE 565 (729)
Q Consensus 556 ~QClrry~dt 565 (729)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 4999999874
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=26.04 E-value=4.6e+02 Score=25.38 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHH
Q 004804 328 FSLGLFVGCSAALILA 343 (729)
Q Consensus 328 f~~G~~~G~~~~l~~~ 343 (729)
...+++.|.+++.++-
T Consensus 31 ~lSALLaGFAMVAmVE 46 (214)
T 4hkr_A 31 KTSALLSGFAMVAMVE 46 (214)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccceeeEEE
Confidence 5678888888766543
No 7
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=20.01 E-value=2.1e+02 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 116 DEFNKVD-KFYRTKVKEVIAEAQSLSQQMDALIA 148 (729)
Q Consensus 116 ~EL~KVn-~FY~~Ke~E~~~r~~~L~~ql~~l~~ 148 (729)
+++..++ .|-.-||+=+.+|+..++.+++++..
T Consensus 13 d~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 13 SEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444 78888899999999999999987643
No 8
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=19.42 E-value=4.1e+02 Score=22.34 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 122 DKFYRTKVKEVIAEAQSLSQQMDALIAF 149 (729)
Q Consensus 122 n~FY~~Ke~E~~~r~~~L~~ql~~l~~~ 149 (729)
..||..+.+++.+|+...+.++++++.+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~ 34 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENH 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888877654
No 9
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=17.75 E-value=2.2e+02 Score=26.64 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 107 EQEYFRRLDDEFNKVDKFYRTKVKEVIAEAQSLSQQMDALIAF 149 (729)
Q Consensus 107 e~~Ff~~Ld~EL~KVn~FY~~Ke~E~~~r~~~L~~ql~~l~~~ 149 (729)
...--..+++|+++|...|....+.+..+++.|+..|..+...
T Consensus 32 ~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 32 VGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455577899999999999999999999999999999999765
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=15.85 E-value=6.4e+02 Score=25.79 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhHHHhhHHHHHHHHHhhhh
Q 004804 232 AFVEFYLKLRHLKSYSFLNILAFSKIMKKYDK 263 (729)
Q Consensus 232 ~~~e~y~~l~~L~~y~~LN~taf~KIlKK~dK 263 (729)
.+.++-+++..|++...-|...+.++.+....
T Consensus 198 ~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~ 229 (339)
T 4ev6_A 198 KILGLRKTLVYFHKSLIANRDVLVLLKRKYLP 229 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBT
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Confidence 34455556666777777777777777665443
Done!