Query 004804
Match_columns 729
No_of_seqs 262 out of 1123
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 06:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004804.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004804hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1khba1 c.91.1.1 (A:260-622) C 8.8 1.2E+02 0.009 29.5 4.3 34 112-145 324-362 (363)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 7.7 2.1E+02 0.016 16.4 3.2 17 378-394 10-26 (27)
3 d1dq3a2 d.50.3.1 (A:336-414) P 6.7 30 0.0022 25.3 -1.2 18 2-19 2-19 (79)
4 d1wlza1 a.39.1.7 (A:229-311) D 6.6 2.4E+02 0.018 20.2 4.4 37 241-277 9-46 (83)
5 d1tuba2 d.79.2.1 (A:246-440) T 5.9 1.2E+02 0.0084 26.7 2.2 29 254-282 143-173 (195)
6 d1sfka_ a.190.1.1 (A:) Flavivi 5.8 1.3E+02 0.0092 22.3 1.9 27 240-266 39-65 (73)
7 d1koha2 d.58.7.2 (A:105-200) m 5.6 1E+02 0.0074 24.2 1.4 22 475-496 28-49 (96)
8 d2q66a1 a.160.1.1 (A:202-351) 5.4 1.1E+02 0.0077 26.2 1.5 18 329-346 26-43 (150)
9 d1nu9c1 a.8.6.1 (C:1-145) Stap 5.2 4.5E+02 0.033 21.6 5.3 30 216-245 112-141 (145)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 4.8 4.7E+02 0.034 20.5 5.5 27 122-148 90-116 (133)
No 1
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=1.2e+02 Score=29.45 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 004804 112 RRLDDEFNKVDKFYRTKVK-----EVIAEAQSLSQQMDA 145 (729)
Q Consensus 112 ~~Ld~EL~KVn~FY~~Ke~-----E~~~r~~~L~~ql~~ 145 (729)
+...+|++.+.++|.++.. |+.++++.|+++|++
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 5567899999999977653 777777777776653
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.65 E-value=2.1e+02 Score=16.39 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhcC
Q 004804 378 LHMLMYASNICFWRQYR 394 (729)
Q Consensus 378 l~~~~~~~n~~~w~~~~ 394 (729)
|.++-|++.+-+|-+.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 34556788888898876
No 3
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=6.65 E-value=30 Score=25.26 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=14.4
Q ss_pred CchhhhcccCChhhHHhc
Q 004804 2 KFGKEYASQMVPEWQEAY 19 (729)
Q Consensus 2 KFgk~L~~~~VPEWr~~Y 19 (729)
-||-.|.+++..||.++|
T Consensus 2 ~fgl~lnf~afk~was~y 19 (79)
T d1dq3a2 2 NFGLPLNFNAFKEWASEY 19 (79)
T ss_dssp CCEECCCHHHHHHHHHTT
T ss_pred CcCccccHHHHHHHHHHh
Confidence 377788888888888876
No 4
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.63 E-value=2.4e+02 Score=20.22 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=22.3
Q ss_pred HHhhhHHHhhHHHHHHHHHhhhhhcC-CcccHHHHHHc
Q 004804 241 RHLKSYSFLNILAFSKIMKKYDKITS-RRASTSYMRMV 277 (729)
Q Consensus 241 ~~L~~y~~LN~taf~KIlKK~dK~~~-~~~~~~y~~~v 277 (729)
..|++...-+...++++.+.+|+.-. .-....+.+.+
T Consensus 9 ~~l~~~i~~~~~~l~~~F~~~D~~~~G~i~~~ef~~~l 46 (83)
T d1wlza1 9 ARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAIC 46 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHCTTCSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCceEChhHHHHHH
Confidence 34455555667778888999988543 33344444433
No 5
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.89 E-value=1.2e+02 Score=26.69 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=19.5
Q ss_pred HHHHHHhhhhhcCCc-ccHHHHHH-chhcCC
Q 004804 254 FSKIMKKYDKITSRR-ASTSYMRM-VDNSYL 282 (729)
Q Consensus 254 f~KIlKK~dK~~~~~-~~~~y~~~-v~~~~f 282 (729)
|.+|++||||....+ --..|.+. ++..-|
T Consensus 143 f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF 173 (195)
T d1tuba2 143 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 173 (195)
T ss_dssp HHHHHHHHHHHTTTTCCTTTGGGGSCCSSSS
T ss_pred HHHHHHHHHHHHhhchHHHHhcccCCcHHHH
Confidence 678899999988664 34566643 555444
No 6
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=5.77 E-value=1.3e+02 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=23.6
Q ss_pred HHHhhhHHHhhHHHHHHHHHhhhhhcC
Q 004804 240 LRHLKSYSFLNILAFSKIMKKYDKITS 266 (729)
Q Consensus 240 l~~L~~y~~LN~taf~KIlKK~dK~~~ 266 (729)
..+|+++..+|...-.|+||.|.|-.+
T Consensus 39 ~~ll~RW~~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 39 RAVLDRWRSVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998654
No 7
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=1e+02 Score=24.23 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=17.2
Q ss_pred HHHHHHHhHHhhcccccccccc
Q 004804 475 RFFFLASLFHCICAPLYKVALQ 496 (729)
Q Consensus 475 R~~~l~~l~r~~~~p~~~V~F~ 496 (729)
.-|+++.+..+..-||.||.|.
T Consensus 28 K~wLl~~iq~~~pv~F~Pv~fh 49 (96)
T d1koha2 28 KAWLLSMIQSKSSVPFTPIEFH 49 (96)
T ss_dssp HHHHHHHHHHTCSSCCCCBSCC
T ss_pred HHHHHHHHHhcCCCCceeEEEE
Confidence 4588888877667789999885
No 8
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.39 E-value=1.1e+02 Score=26.15 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 004804 329 SLGLFVGCSAALILALIL 346 (729)
Q Consensus 329 ~~G~~~G~~~~l~~~~~~ 346 (729)
..|++.|++++++++-+.
T Consensus 26 ~~GylGGI~waILvArvC 43 (150)
T d2q66a1 26 IFGFPGGVAWAMLVARIC 43 (150)
T ss_dssp GGTSCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 579999999877666433
No 9
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=5.16 E-value=4.5e+02 Score=21.57 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004804 216 TFSRENLKKVEKQLKMAFVEFYLKLRHLKS 245 (729)
Q Consensus 216 ~~~~~~l~~~~~~L~~~~~e~y~~l~~L~~ 245 (729)
+++..++.++...|+.|+.+|..+...+++
T Consensus 112 ~LTm~EyN~I~~sLk~Ave~F~kEVk~Iq~ 141 (145)
T d1nu9c1 112 DLTMREYNELTESLKSAVKDFEKDVEIIEN 141 (145)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778889999999999999887764
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.76 E-value=4.7e+02 Score=20.54 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004804 122 DKFYRTKVKEVIAEAQSLSQQMDALIA 148 (729)
Q Consensus 122 n~FY~~Ke~E~~~r~~~L~~ql~~l~~ 148 (729)
-+|+..+.+++.+.++.++.++..+.+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~ 116 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554433
Done!