BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004805
(729 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/779 (60%), Positives = 556/779 (71%), Gaps = 56/779 (7%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVA+P+SS ARIIAH+D+DCFYVQVEQRKQP LRGLPTAVVQYN WKGGGLIAV YEAR
Sbjct: 1 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK+VCPQI+LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASID
Sbjct: 61 KFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAEAMLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADH
Sbjct: 121 EVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADH 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLLACG LIV ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+G
Sbjct: 180 RDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRG 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGI
Sbjct: 240 LLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV++RLL KSHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHT
Sbjct: 300 SGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A+KS+DSDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ +
Sbjct: 360 LTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQ 419
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSPSGSE 479
SGW ITALSVSASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS SGSE
Sbjct: 420 CSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSE 479
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGL------------DPSCSIS 527
SY LN E Q + PGE+ I + M +L Q E K W +P+ S+S
Sbjct: 480 SYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLS 539
Query: 528 KQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFF 587
+Q + SSSS ++ ++ +P + E + +A +D A+ + +
Sbjct: 540 EQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGY 599
Query: 588 KSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERL------------------ 629
K D+ CS + + + S + QV +PKE +
Sbjct: 600 KIDDIDCSVMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRN 656
Query: 630 --------DNSTGDCLSESNQ-----------NQVNIPKERLAEAATTSTSTDRCGSDQI 670
D S D LS Q NQV +PKE + AA T + RC
Sbjct: 657 DGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGG 714
Query: 671 QQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 729
+R E+W +I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 715 AERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 773
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/785 (60%), Positives = 556/785 (70%), Gaps = 62/785 (7%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVA+P+SS ARIIAH+D+DCFYVQVEQRKQP LRGLPTAVVQYN WKGGGLIAV YEAR
Sbjct: 1 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK+VCPQI+LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASID
Sbjct: 61 KFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAEAMLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADH
Sbjct: 121 EVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADH 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLLACG LIV ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+G
Sbjct: 180 RDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRG 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGI
Sbjct: 240 LLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV++RLL KSHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHT
Sbjct: 300 SGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A+KS+DSDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ +
Sbjct: 360 LTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQ 419
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSP---- 475
SGW ITALSVSASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS
Sbjct: 420 CSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSDWG 479
Query: 476 --SGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGL------------D 521
SGSESY LN E Q + PGE+ I + M +L Q E K W +
Sbjct: 480 VYSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHN 539
Query: 522 PSCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGAS 581
P+ S+S+Q + SSSS ++ ++ +P + E + +A +D A+
Sbjct: 540 PTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAA 599
Query: 582 SILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERL------------ 629
+ +K D+ CS + + + S + QV +PKE +
Sbjct: 600 KRNDGYKIDDIDCSVMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDS 656
Query: 630 --------------DNSTGDCLSESNQ-----------NQVNIPKERLAEAATTSTSTDR 664
D S D LS Q NQV +PKE + AA T + R
Sbjct: 657 SAAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRR 714
Query: 665 CGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFS 724
C +R E+W +I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFS
Sbjct: 715 CSLGGGAERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFS 774
Query: 725 PSKNR 729
P KN+
Sbjct: 775 PMKNK 779
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/739 (59%), Positives = 522/739 (70%), Gaps = 46/739 (6%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVAR ++ R+IAHVD+DCFYVQVEQRKQP LRGLP+AV+QYN +KGG LIAV YEAR
Sbjct: 1 MPVARRETCDGRVIAHVDMDCFYVQVEQRKQPNLRGLPSAVIQYNSYKGGALIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAKE CPQI+LVQVPVARGKADL+SYRNAGSEVVS+L++KGRCERASID
Sbjct: 61 RCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLT AAE ML ETP +S+ + ++E LKSH+LGLE KDG+D+K V++WLCR DA +
Sbjct: 121 EVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASY 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLLACG LIV +LRM+VLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+G
Sbjct: 181 QDKLLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEG 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMK LGGKLG+SLQ++LGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGI
Sbjct: 241 LLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHGSGK+FPGP+ALKTV SVQHWLNQLCEEL+ERL SDL+QNKRIA T
Sbjct: 301 SGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQT 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A+K+ DSDS +KFPSKSCPLRYGT KIQED LFQAGLR+FLG + K G+
Sbjct: 361 LTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNE 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSE 479
+ W +T+LSVSASK+V + SGT SI+KYF G STS Q D ID AAP SPSGS
Sbjct: 421 NNNWGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSG 480
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGT 539
+ S L E + E P E ++ S A L Q DP C +S + G S
Sbjct: 481 NCSGLVPNEFELEYP-EDTGMKDSKACLDQ----------QDPLCHLSCKADGLTEESSL 529
Query: 540 ESSSS----LDQNKPQN----RDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGD 591
S S + N+P D R+ ++ + K + K +G SI++FF +
Sbjct: 530 VSPSGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYH 589
Query: 592 LSCSSGNHDTEHAETLLPLGDCLSESNKK-QVNIPKERLDNSTGDCLSESNQNQVNIPKE 650
S SS L + N K ++ DNS C+ QV +P E
Sbjct: 590 NSQSS-----------------LEQKNVKISSSLGSHSADNSHSTCI------QVEMPAE 626
Query: 651 RLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRP 710
E T+ S RC + Q + W I EIDPS+I+ELP EIQ E Q WLRP KRP
Sbjct: 627 HPHEEFDTNKS--RCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRP 684
Query: 711 HRVKQGFTIADYFSPSKNR 729
+ K+G +I YFSP K+R
Sbjct: 685 NVAKRGSSITHYFSPDKSR 703
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/730 (58%), Positives = 514/730 (70%), Gaps = 66/730 (9%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVAR ++S AR+IAHVD+DCFYVQVEQRKQP+LRGLPTAVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARAETSDARVIAHVDMDCFYVQVEQRKQPELRGLPTAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK VCPQI+LVQVPVARGKADL+ YR AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAVCPQIQLVQVPVARGKADLNLYRGAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K V++W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMSREDGDDFKENVRDWICRKDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
R+KLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+S+V+
Sbjct: 181 REKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYSAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LG+ TVGDLL++SE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGIDTVGDLLQYSETKLQEHYGINTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLSSDLEQNKRIAST 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHASAFKS DS+S KKFPSKSCPLRYG KIQED FNLFQA RE++G FG K +G+
Sbjct: 361 LTLHASAFKSRDSNSHKKFPSKSCPLRYGVTKIQEDAFNLFQAAFREYMGPFGSKPRGNK 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSES 480
WRIT LS+SASKIV + SGT SIM+YF S S + D ++PS SE
Sbjct: 421 QETWRITGLSISASKIVDIPSGTSSIMRYFQSESTVPSRS--VDGCVQDHVTITPSASEG 478
Query: 481 YSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTE 540
S STE Q +P E+ + +++ + N G+DP K + T+
Sbjct: 479 CSEQRSTETQAAMPEEETGVTYTLHNF------ENPDKGIDPVS--EKDVVSCPSNEATD 530
Query: 541 SSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHD 600
S+ + NK ++ + + K N S K+ G SI++ FK+ + + S
Sbjct: 531 VSTQSESNK-----GTQTKRIGRKMNN-----SKEKNWGMPSIVDIFKNYNATPPSKQET 580
Query: 601 TEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTST 660
E + +S ++KK + NS S+ +QVN E
Sbjct: 581 QEDS--------TVSSTSKKA------KFSNS-------SHNSQVNQEVE---------- 609
Query: 661 STDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGF 717
++R + W + +EID SV DELP EIQ E++++LRP+K+ + K G
Sbjct: 610 ----------ERREKDWGYKTDEIDQSVFDELPVEIQRELRSFLRPNKQFNAGKSKGDGS 659
Query: 718 T--IADYFSP 725
T IA YF P
Sbjct: 660 TSSIAHYFPP 669
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana]
gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/731 (57%), Positives = 508/731 (69%), Gaps = 68/731 (9%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNK 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSE 479
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE
Sbjct: 421 LETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASE 477
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGT 539
S STE Q +P + +++ + + + + D S + T
Sbjct: 478 GCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--------AT 529
Query: 540 ESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNH 599
+ S+ + NK ++ + + K N + K++G SI++ FK+ + + S
Sbjct: 530 DVSTQSESNK-----GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQE 579
Query: 600 DTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTS 659
E D S K+ + S S+ +QVN E
Sbjct: 580 TQE---------DSTVSSASKRAKLS------------SSSHNSQVNQEVE--------- 609
Query: 660 TSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QG 716
+ R W + +EID SV DELP EIQ E++++LR +K+ + K G
Sbjct: 610 -----------ESRETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDG 658
Query: 717 FT--IADYFSP 725
T IA YF P
Sbjct: 659 STSSIAHYFPP 669
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis
thaliana]
Length = 672
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/731 (57%), Positives = 506/731 (69%), Gaps = 68/731 (9%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLL+CG++IV ELR QVLKETE TCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETELTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GS G+K QG+
Sbjct: 361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSVGIKPQGNK 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSE 479
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE
Sbjct: 421 LETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASE 477
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGT 539
S STE Q +P + +++ + + + + D S + T
Sbjct: 478 GCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--------AT 529
Query: 540 ESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNH 599
+ S+ + NK ++ + + K N + K++G SI++ FK+ + + S
Sbjct: 530 DVSTQSESNK-----GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQE 579
Query: 600 DTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTS 659
E D S K+ + S S+ +QVN E
Sbjct: 580 TQE---------DSTVSSASKRAKLS------------SSSHNSQVNQEVE--------- 609
Query: 660 TSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QG 716
+ R W + +EID SV DELP EIQ E++++LR +K+ + K G
Sbjct: 610 -----------ESRETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDG 658
Query: 717 FT--IADYFSP 725
T IA YF P
Sbjct: 659 STSSIAHYFPP 669
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana]
Length = 689
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/748 (56%), Positives = 508/748 (67%), Gaps = 85/748 (11%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEV------------VSIL 108
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEV VSIL
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVDGSGSYYYTVCVVSIL 120
Query: 109 ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 168
A+ G+CERASIDEVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +
Sbjct: 121 AKSGKCERASIDEVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKES 180
Query: 169 VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 228
V+ W+CR DAD RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPA
Sbjct: 181 VRNWICREDADRRDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 240
Query: 229 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 288
QQT VP+++V+ LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG N
Sbjct: 241 QQTVVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVN 300
Query: 289 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 348
TGTWLWNIARGISGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL
Sbjct: 301 TGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLG 360
Query: 349 SDLEQNKRIAHTLTLHASAFK-----SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 403
SDLEQNKRIA TLTLHASAF+ S DSDS KKFPSKSCP+RYG KIQED FNLFQA
Sbjct: 361 SDLEQNKRIASTLTLHASAFRVPTSLSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQA 420
Query: 404 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQL 463
LRE++GSFG+K QG+ WRIT LSVSASKIV + SGT SIM+YF S S
Sbjct: 421 ALREYMGSFGIKPQGNKLETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS--- 477
Query: 464 PDNFIDA-APLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP 522
D + ++ S SE S STE Q +P + +++ + + + + D
Sbjct: 478 ADGCVQGNVAMTASASEGCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDV 537
Query: 523 SCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASS 582
S + T+ S+ + NK ++ + + K N + K++G S
Sbjct: 538 VSCPSNE--------ATDVSTQSESNK-----GTQTKKIGRKMNNSKE-----KNRGMPS 579
Query: 583 ILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQ 642
I++ FK+ + + S E D S K+ + S S+
Sbjct: 580 IVDIFKNYNATPPSKQETQE---------DSTVSSASKRAKLS------------SSSHN 618
Query: 643 NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQA 702
+QVN E + R W + +EID SV DELP EIQ E+++
Sbjct: 619 SQVNQEVE--------------------ESRETDWGYKTDEIDQSVFDELPVEIQRELRS 658
Query: 703 WLRPSKRPHRVK---QGFT--IADYFSP 725
+LR +K+ + K G T IA YF P
Sbjct: 659 FLRTNKQFNTGKSKGDGSTSSIAHYFPP 686
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 557
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/523 (71%), Positives = 431/523 (82%), Gaps = 1/523 (0%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVA+P+SS RIIAHVD+DCFYVQVEQRKQP LRGLPTAVVQYN WKGGGLIAVGYEAR
Sbjct: 1 MPVAKPESSDVRIIAHVDMDCFYVQVEQRKQPCLRGLPTAVVQYNSWKGGGLIAVGYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK+VCPQI+L+QVPVARGKADL +YR+AGSEVV +L++KGRCERASID
Sbjct: 61 KFGVKRSMRGDEAKKVCPQIQLIQVPVARGKADLKTYRDAGSEVVRVLSKKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAEAML ETPPES++ +D EALKSH+LGL+ ++ +D + V++WL +CD+D+
Sbjct: 121 EVYLDLTDAAEAMLVETPPESMEAIDVEALKSHVLGLDQEEQSDGQECVRKWLTKCDSDY 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLLACG LIV ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKG
Sbjct: 181 RDKLLACGTLIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKG 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LLDSLPIKKMKQLGGKLG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG
Sbjct: 241 LLDSLPIKKMKQLGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGS 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLP SHGSGKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHT
Sbjct: 301 SGEEVQCRLLPNSHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHT 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LT HA+A++ SDSDS KKFPSKSCPLRYG AKIQED NLF+AGLR++LGS+ G
Sbjct: 361 LTFHATAYRLSDSDSHKKFPSKSCPLRYGAAKIQEDALNLFKAGLRDYLGSYRANILGDS 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSES 480
+GWRIT+LSVSASKI+ + SG CSI KY + ++SEQ DN I L SG +
Sbjct: 421 NNGWRITSLSVSASKIMTIPSGMCSITKYLHVQHSSCTSSEQPQDNDIQETALH-SGCTN 479
Query: 481 YSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPS 523
YS ++S E +E GE++ IE LG + + D S
Sbjct: 480 YSVMDSNEAHDERTGEEMKIEDEHDRLGCTDYSVDLCEAFDKS 522
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula]
gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula]
Length = 543
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/521 (73%), Positives = 433/521 (83%), Gaps = 4/521 (0%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
M V R +S R+IAHVD+DCFYVQVEQRKQP LRGLPTAVVQYN +KGGGLIAV YEAR
Sbjct: 1 MRVGRRESCDGRVIAHVDMDCFYVQVEQRKQPSLRGLPTAVVQYNSYKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAKE CPQI+LVQVPVARGKA+L++YRNAGSEVVSIL+RKGRCERASID
Sbjct: 61 KSGVKRSMRGDEAKEACPQIQLVQVPVARGKANLNTYRNAGSEVVSILSRKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ ML ETPPE ++ V+EE LKSH+LGL+ KDG+D+K V++W+CR DA +
Sbjct: 121 EVYLDLTDAAQTMLMETPPECVEHVEEEVLKSHVLGLQIKDGDDAKEEVRKWICRSDASY 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
++KLLACG IV ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+G
Sbjct: 181 QEKLLACGAFIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSVEG 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL+S PIKKMKQLGGKLGTSLQ++LG+ TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGI
Sbjct: 241 LLESFPIKKMKQLGGKLGTSLQSDLGINTVGDLLQFSEEKLQQRYGINTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHGSGK+FPGP+ALKT+ASVQHWLN+L EELSERL SD++QNKRIAHT
Sbjct: 301 SGEEVEGRLLPKSHGSGKTFPGPQALKTIASVQHWLNELGEELSERLDSDMDQNKRIAHT 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A+K DSDS KKFPSKSCPLRYGT KIQED LFQ+GLR+FLG + KT GS
Sbjct: 361 LTLHARAYKKGDSDSHKKFPSKSCPLRYGTTKIQEDALTLFQSGLRDFLGLYNSKTNGSE 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSE 479
+ W ITALSVSASKIVP+ SGT SI KYF+ GS+S Q DN ID AP SPSGSE
Sbjct: 421 -NKWGITALSVSASKIVPIPSGTHSITKYFSETFPHGSSSNQSVDNVIDEVAPSSPSGSE 479
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGL 520
+ + ELQ E P E + H A L Q +K +NGL
Sbjct: 480 NCMGVIPNELQLECPEEDTGVNHPKACLDQQILKG--FNGL 518
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis]
gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis]
Length = 560
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/590 (66%), Positives = 446/590 (75%), Gaps = 38/590 (6%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+SS +RIIAHVD+DCFYVQVEQRKQP+LRGLPTAVVQYNEWKGGGLIAV YEAR
Sbjct: 1 MPVARPESSDSRIIAHVDMDCFYVQVEQRKQPQLRGLPTAVVQYNEWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAKEVCPQI LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASID
Sbjct: 61 KFGVKRSMRGDEAKEVCPQILLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTD+AEAML +TPP SLD +D+E LKSH+LGL++++GND+K V+EWLCR DADH
Sbjct: 121 EVYLDLTDSAEAMLKDTPPNSLDVIDDEVLKSHVLGLKNENGNDAKEDVREWLCRNDADH 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLLACG +IV ELRMQVLKETEFTCSAGIAHNKM +
Sbjct: 181 RDKLLACGAIIVAELRMQVLKETEFTCSAGIAHNKMDCNI-------------------- 220
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L D KQLGGKLG+SLQNELGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGI
Sbjct: 221 LFDC-----RKQLGGKLGSSLQNELGVDTVGDLLQFSEEKLQDRYGINTGTWLWNIARGI 275
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
+GEEVQ RLLPKSHGSGKSFPGP+ALKT+ASVQHWLNQLCEELSERLCSDLEQNKR+AHT
Sbjct: 276 NGEEVQGRLLPKSHGSGKSFPGPQALKTIASVQHWLNQLCEELSERLCSDLEQNKRMAHT 335
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHASA+KSSDSDS KKFPSKS PLRYGTAKIQED FNLFQAGLRE+LG+ GVK GSH
Sbjct: 336 LTLHASAYKSSDSDSHKKFPSKSGPLRYGTAKIQEDAFNLFQAGLREYLGAHGVKVLGSH 395
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSES 480
++GW IT LSVSA+KI+ + SGT SIMKYFNG F S+Q PD+FI AP S S
Sbjct: 396 HNGWGITGLSVSANKIIDLPSGTSSIMKYFNGQSSFHCPSKQTPDSFIHDAPPSSPSGSS 455
Query: 481 Y---STLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHS 537
+ S + L EL + E ++ +LG+ + A D W +
Sbjct: 456 FWVVSFMLVLILNEEL---NLGSEVNLVELGKESLLAEHRANYDRHNLTQNAERESWNYK 512
Query: 538 GTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFF 587
E S+ P D +++ Q HK++ + KGA +I ++F
Sbjct: 513 IDEIDPSVINELPPEIQDE------VRAWLQPHKRARIVKKGA-TIAHYF 555
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 640 SNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDE 699
S N V + KE L A + DR Q +R ESW +I+EIDPSVI+ELP EIQDE
Sbjct: 475 SEVNLVELGKESLL--AEHRANYDRHNLTQNAER-ESWNYKIDEIDPSVINELPPEIQDE 531
Query: 700 IQAWLRPSKRPHRVKQGFTIADYFSPSK 727
++AWL+P KR VK+G TIA YFSP K
Sbjct: 532 VRAWLQPHKRARIVKKGATIAHYFSPPK 559
>gi|145281849|gb|ABP49609.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 442
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/441 (79%), Positives = 395/441 (89%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNK 420
Query: 421 YSGWRITALSVSASKIVPVLS 441
WRIT LSVSASKIV + S
Sbjct: 421 LETWRITGLSVSASKIVDIPS 441
>gi|242054469|ref|XP_002456380.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
gi|241928355|gb|EES01500.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
Length = 636
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/737 (52%), Positives = 477/737 (64%), Gaps = 110/737 (14%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQVEQR+ P LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPALRGQPTAVVQYNDWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVARGKADL+ YR+AGSEVV+ILA KG+CERASID
Sbjct: 61 GFGVKRSMRGDEAKSVCPGINLVQVPVARGKADLNLYRSAGSEVVAILASKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ ML + PP+S +E+ EA KS+ILGL S D + + V+ WLCR DAD+
Sbjct: 121 EVYLDLTDAAKEMLLQAPPDSQEEIFMEAAKSNILGLLS-DAGEKEKNVRAWLCRSDADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+
Sbjct: 180 QDKLLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQD 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+EDKLQE YG NTGTWLW ARGI
Sbjct: 240 FLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEDKLQEQYGVNTGTWLWKTARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA T
Sbjct: 300 SGEEVEDRLLPKSHGCGKTFPGPRALKNSASVKGWLDQLCEELSERIQSDLNQNKRIAQT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A K ++ DS KKFPSKSCPLRYGT KIQED LF++GL EFL S
Sbjct: 360 LTLHARASKENERDSTKKFPSKSCPLRYGTRKIQEDAMKLFESGLHEFL--------ESQ 411
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSES 480
+GW IT+LSV+ASKI + SGT SI++Y GP+ AAP P+ +S
Sbjct: 412 NTGWSITSLSVTASKIFDIPSGTSSILRYIKGPN--------------SAAP--PAIPDS 455
Query: 481 YSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTE 540
S L N++ + + E + E + T
Sbjct: 456 SSVPEDPSLDNDVFVKPIHEEQCQPSTSEKE------------------------DNNTH 491
Query: 541 SSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHD 600
S S++ + Q + R+ K + KG SSIL F G S H+
Sbjct: 492 SVSTISAKQCQANKEKRI------------SKKLPEVKGTSSILKFLSRGQ----STFHE 535
Query: 601 TEHAETLLPLGDC-------LSESNK-KQVNIPKERLD-NSTGDCLSESNQNQVNIPKER 651
++ L+ C SE+NK ++ N+P + D N T C S N
Sbjct: 536 KRKSDGLI----CSHQGPGSSSEANKAEENNVPADAEDRNHTNSCAEPSGSN-------- 583
Query: 652 LAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPH 711
+W I++IDP+V++ELP EIQ EIQ W+RPSK P
Sbjct: 584 ------------------------TWMFNIQDIDPAVVEELPPEIQREIQGWVRPSKHPS 619
Query: 712 RVKQGFTIADYFSPSKN 728
++G TI+ YF P+++
Sbjct: 620 TKRRGSTISSYFPPARS 636
>gi|57900369|dbj|BAD87579.1| putative DNA polymerase [Oryza sativa Japonica Group]
Length = 634
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/454 (70%), Positives = 377/454 (83%), Gaps = 9/454 (1%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQVEQR+ P+LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASID
Sbjct: 61 KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD+
Sbjct: 121 EVYLDLTDAAKEMLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+
Sbjct: 180 QDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQD 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGI
Sbjct: 240 FLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA T
Sbjct: 300 SGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTL+A A K + SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K
Sbjct: 360 LTLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK----- 414
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
W IT+LSVSASKI + GT SI++Y GP+
Sbjct: 415 ---WSITSLSVSASKIFDIPIGTSSILRYIKGPN 445
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 674 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 727
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 631
>gi|115440035|ref|NP_001044297.1| Os01g0757800 [Oryza sativa Japonica Group]
gi|57900368|dbj|BAD87578.1| putative DNA polymerase [Oryza sativa Japonica Group]
gi|113533828|dbj|BAF06211.1| Os01g0757800 [Oryza sativa Japonica Group]
Length = 642
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/454 (70%), Positives = 377/454 (83%), Gaps = 9/454 (1%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQVEQR+ P+LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASID
Sbjct: 61 KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD+
Sbjct: 121 EVYLDLTDAAKEMLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+
Sbjct: 180 QDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQD 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGI
Sbjct: 240 FLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA T
Sbjct: 300 SGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTL+A A K + SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K
Sbjct: 360 LTLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK----- 414
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
W IT+LSVSASKI + GT SI++Y GP+
Sbjct: 415 ---WSITSLSVSASKIFDIPIGTSSILRYIKGPN 445
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 674 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 728
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K+
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAKS 632
>gi|414880431|tpg|DAA57562.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 480
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/474 (68%), Positives = 383/474 (80%), Gaps = 11/474 (2%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQVEQR+ P LRG PTAVVQYN WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPALRGQPTAVVQYNGWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASID
Sbjct: 61 GFGVKRSMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD+
Sbjct: 121 EVYLDLTDAANEMVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+
Sbjct: 180 QDKLLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQD 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGI
Sbjct: 240 LLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA T
Sbjct: 300 SGEEVEDRLLPKSHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA AFK ++ DS KKFPSKSCPLRYGT KIQED LF++GL EFL S
Sbjct: 360 LTLHARAFKKNEHDSMKKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQ 411
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS 474
+GW IT+LSV+ASKI + SGT SI++Y GP + + +PD+ AA L+
Sbjct: 412 NTGWGITSLSVTASKIFDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALA 463
>gi|326524061|dbj|BAJ97041.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/452 (69%), Positives = 368/452 (81%), Gaps = 9/452 (1%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAH+DLDCFYVQVEQR+ P LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHLDLDCFYVQVEQRRNPALRGQPTAVVQYNDWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPV+R KADL+ YRNAGSEVV+IL+ KG+CERASID
Sbjct: 61 KFGVKRSMRGDEAKNVCPGINLVQVPVSRDKADLNVYRNAGSEVVAILSTKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ ML E+PPES + EEA KS+IL L S D D + VK WLCR DAD+
Sbjct: 121 EVYLDLTDAAKEMLLESPPESSGSIFEEATKSNILDLPS-DAGDREENVKAWLCRADADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLLACG ++V +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+
Sbjct: 180 QDKLLACGAILVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQD 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L SLP+KKMKQLGGKLG+SLQ++LGV TVGDLL F+E+KLQE YG NTGTWLW ARGI
Sbjct: 240 FLASLPVKKMKQLGGKLGSSLQDDLGVETVGDLLGFTEEKLQEYYGVNTGTWLWKTARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGP+ALK +SV+ WL++LCEELSER+ SDL NKR+A T
Sbjct: 300 SGEEVEDRLLPKSHGCGKTFPGPKALKNNSSVKSWLDKLCEELSERIQSDLSCNKRVAQT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTL A A K ++ +S KKFPSKSCPLRYGT KIQED LF++GL +F GS
Sbjct: 360 LTLQARASKENEGNSMKKFPSKSCPLRYGTGKIQEDAMKLFESGLHDFW--------GSQ 411
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNG 452
+GW IT+LSV+ASKI + SGT SI+KY G
Sbjct: 412 NAGWSITSLSVTASKIFDIPSGTNSILKYIKG 443
>gi|357136514|ref|XP_003569849.1| PREDICTED: DNA polymerase eta-like [Brachypodium distachyon]
Length = 632
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/450 (68%), Positives = 365/450 (81%), Gaps = 9/450 (2%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAH+DLDCFYVQVEQR+ P LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHLDLDCFYVQVEQRRNPALRGQPTAVVQYNDWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASID
Sbjct: 61 KFGVKRSMRGDEAKHVCPGINLVQVPVAREKADLNIYRSAGSEVVAILSTKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ L E+PPES + + EEA KS+IL L S D ++ + V+ WLCR DAD+
Sbjct: 121 EVYLDLTDAAKERLLESPPESSEIIFEEATKSNILDLSS-DVSNREENVRAWLCRADADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+
Sbjct: 180 QDKLLACGAIIVAQLRIKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQD 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L SLP+KKMKQLGGKLG+SLQ++LGV TVGDLL F+E+KLQ+ YG NTGTWLW ARGI
Sbjct: 240 FLASLPVKKMKQLGGKLGSSLQDDLGVKTVGDLLTFTEEKLQDYYGVNTGTWLWKTARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ R+LPKSHG GK+FPG +ALK ASV+ WL++LCEELSER+ SDL NKR+A T
Sbjct: 300 SGEEVEDRILPKSHGCGKTFPGSKALKNNASVKSWLDKLCEELSERIQSDLNSNKRVAQT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A K ++ + KKFPSKSCPLRYGT KIQED LF++ L +F GS
Sbjct: 360 LTLHARACKENECNLMKKFPSKSCPLRYGTGKIQEDAMKLFESALHDFW--------GSR 411
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+GW IT+LSV+ASKI SGT SI++Y
Sbjct: 412 NTGWSITSLSVTASKIFDDTSGTNSILRYI 441
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 677 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 728
W +E+IDP+V+ ELP EIQ EIQ W RPSK+ +G TI+ YF P+++
Sbjct: 581 WMFNVEDIDPAVVGELPLEIQREIQGWTRPSKQASTKPRGHTISSYFPPARS 632
>gi|222619273|gb|EEE55405.1| hypothetical protein OsJ_03511 [Oryza sativa Japonica Group]
Length = 621
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 312/454 (68%), Positives = 366/454 (80%), Gaps = 22/454 (4%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ +GA VEQR+ P+LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPAGA-------------AVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 47
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASID
Sbjct: 48 KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID 107
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD+
Sbjct: 108 EVYLDLTDAAKEMLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADY 166
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+
Sbjct: 167 QDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQD 226
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGI
Sbjct: 227 FLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGI 286
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA T
Sbjct: 287 SGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQT 346
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTL+A A K + SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K
Sbjct: 347 LTLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK----- 401
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
W IT+LSVSASKI + GT SI++Y GP+
Sbjct: 402 ---WSITSLSVSASKIFDIPIGTSSILRYIKGPN 432
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 674 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 727
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 565 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 618
>gi|414880429|tpg|DAA57560.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 623
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 356/737 (48%), Positives = 447/737 (60%), Gaps = 123/737 (16%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQ G
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQGRN--------------------------FGRNGC 34
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
Y V RSMRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASID
Sbjct: 35 AYSVFRSMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASID 94
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD+
Sbjct: 95 EVYLDLTDAANEMVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADY 153
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+DKLLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+
Sbjct: 154 QDKLLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQD 213
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGI
Sbjct: 214 LLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGI 273
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV+ RLLPKSHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA T
Sbjct: 274 SGEEVEDRLLPKSHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQT 333
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA AFK ++ DS KKFPSKSCPLRYGT KIQED LF++GL EFL S
Sbjct: 334 LTLHARAFKKNEHDSMKKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQ 385
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSES 480
+GW IT+LSV+ASKI + SGT SI++Y GP + + +PD+ AA L+ +S
Sbjct: 386 NTGWGITSLSVTASKIFDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALAI--PDS 441
Query: 481 YSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGQWFHSGTE 540
L N++ E + E + E NT HS +
Sbjct: 442 SFVPEDPSLDNDVFVEPIHEEECQPSTSEKEDDNNT-------------------HSASA 482
Query: 541 SSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHD 600
S+ + + R ++ V +G SSIL F G S H+
Sbjct: 483 FSAKKCRANEEKRISKKLPGV----------------QGTSSILKFLSRGQ----STLHE 522
Query: 601 TEHAETLLPLGDC-------LSESNKKQV-NIPKERLD-NSTGDCLSESNQNQVNIPKER 651
++ L+ C SE+ K N+P E D N+T C S N
Sbjct: 523 KRKSDGLI----CSHQGPGSSSEAYKAGAHNVPAEAEDRNNTNSCAEPSGSN-------- 570
Query: 652 LAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPH 711
+W +++IDP+V++ELP EIQ EIQ W+RPSK P
Sbjct: 571 ------------------------TWTFNLQDIDPAVVEELPPEIQREIQGWVRPSKHPI 606
Query: 712 RVKQGFTIADYFSPSKN 728
++G TI+ YF P+++
Sbjct: 607 TKRRGSTISSYFPPARS 623
>gi|449434198|ref|XP_004134883.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 506
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 281/351 (80%), Positives = 319/351 (90%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCFYVQVEQRKQP LRGLPTAVVQYN WKGGGLIAVGYEAR +GVKRSMRGDEAK+VCP
Sbjct: 24 MDCFYVQVEQRKQPCLRGLPTAVVQYNSWKGGGLIAVGYEARKFGVKRSMRGDEAKKVCP 83
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETP 138
QI+L+QVPVARGKADL +YR+AGSEVV +L++KGRCERASIDEVYLDLTDAAEAML ETP
Sbjct: 84 QIQLIQVPVARGKADLKTYRDAGSEVVRVLSKKGRCERASIDEVYLDLTDAAEAMLVETP 143
Query: 139 PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQ 198
PES++ +D EALKSH+LGL+ ++ +D + V++WL +CD+D+RDKLLACG LIV ELRMQ
Sbjct: 144 PESMEAIDVEALKSHVLGLDQEEQSDGQECVRKWLTKCDSDYRDKLLACGTLIVAELRMQ 203
Query: 199 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 258
VLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLDSLPIKKMKQLGGKLG
Sbjct: 204 VLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLDSLPIKKMKQLGGKLG 263
Query: 259 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 318
+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGEEVQ RLLP SHGSGK
Sbjct: 264 SSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGEEVQCRLLPNSHGSGK 323
Query: 319 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
SFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT HA+A++
Sbjct: 324 SFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTFHATAYR 374
>gi|30694597|ref|NP_851130.1| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|13430742|gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|21280927|gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|332007771|gb|AED95154.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 588
Score = 603 bits (1555), Expect = e-169, Method: Compositional matrix adjust.
Identities = 336/628 (53%), Positives = 412/628 (65%), Gaps = 68/628 (10%)
Query: 104 VVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 163
VVSILA+ G+CERASIDEVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+
Sbjct: 20 VVSILAKSGKCERASIDEVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGD 79
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D K +V+ W+CR DAD RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASG
Sbjct: 80 DFKESVRNWICREDADRRDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASG 139
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
MNKPAQQT VP+++V+ LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE
Sbjct: 140 MNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQE 199
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
YG NTGTWLWNIARGISGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EEL
Sbjct: 200 HYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEEL 259
Query: 344 SERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 403
SERL SDLEQNKRIA TLTLHASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA
Sbjct: 260 SERLGSDLEQNKRIASTLTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQA 319
Query: 404 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQL 463
LRE++GSFG+K QG+ WRIT LSVSASKIV + SGT SIM+YF S S
Sbjct: 320 ALREYMGSFGIKPQGNKLETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS--- 376
Query: 464 PDNFIDA-APLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP 522
D + ++ S SE S STE Q +P + +++ + + + + D
Sbjct: 377 ADGCVQGNVAMTASASEGCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDV 436
Query: 523 SCSISKQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASS 582
S + T+ S+ + NK ++ + + K N + K++G S
Sbjct: 437 VSCPSNE--------ATDVSTQSESNK-----GTQTKKIGRKMNNSKE-----KNRGMPS 478
Query: 583 ILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQ 642
I++ FK+ + + S E D S K+ + S S+
Sbjct: 479 IVDIFKNYNATPPSKQETQE---------DSTVSSASKRAKLS------------SSSHN 517
Query: 643 NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQA 702
+QVN E + R W + +EID SV DELP EIQ E+++
Sbjct: 518 SQVNQEVE--------------------ESRETDWGYKTDEIDQSVFDELPVEIQRELRS 557
Query: 703 WLRPSKRPHRVK---QGFT--IADYFSP 725
+LR +K+ + K G T IA YF P
Sbjct: 558 FLRTNKQFNTGKSKGDGSTSSIAHYFPP 585
>gi|224075345|ref|XP_002304597.1| predicted protein [Populus trichocarpa]
gi|222842029|gb|EEE79576.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/350 (79%), Positives = 320/350 (91%)
Query: 103 EVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG 162
+VVSILARKGRCERASIDEVYLDLTD+AEAML ETPPESL+ ++EE+ KSHILGL+S+D
Sbjct: 2 QVVSILARKGRCERASIDEVYLDLTDSAEAMLRETPPESLESINEESRKSHILGLKSEDA 61
Query: 163 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
ND++ V +WL R DA+H+DKLLACG LIV+ELRM+VLKET+FTCSAGIAHNKMLAKL S
Sbjct: 62 NDAQENVSKWLRRSDANHQDKLLACGALIVSELRMEVLKETQFTCSAGIAHNKMLAKLVS 121
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282
GMNKPAQQT VP SSVKGLL+SLPIKKMKQLGGKLGTSLQ +LGV+TVGDLL+FSE+KLQ
Sbjct: 122 GMNKPAQQTVVPSSSVKGLLESLPIKKMKQLGGKLGTSLQTDLGVSTVGDLLQFSEEKLQ 181
Query: 283 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
E +G NTGTWLW+IARGI+GEEVQ RLLPKSHG+GKSFPGPRALKT+ASVQHWLNQLC+E
Sbjct: 182 ERFGINTGTWLWSIARGINGEEVQGRLLPKSHGAGKSFPGPRALKTIASVQHWLNQLCDE 241
Query: 343 LSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ 402
L+ER+C DL+QNK+IAHT T++ASA+KS DS+S KKFPSKSCPLRYGTAKIQED FNLFQ
Sbjct: 242 LNERICCDLDQNKQIAHTFTVYASAYKSCDSESYKKFPSKSCPLRYGTAKIQEDAFNLFQ 301
Query: 403 AGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNG 452
AGLRE++GS GVKT G H++GW IT+LSVSASKIV + SGT SI KYF+G
Sbjct: 302 AGLREYIGSHGVKTLGHHHNGWGITSLSVSASKIVAIPSGTGSITKYFHG 351
>gi|145281847|gb|ABP49608.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 350
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/333 (80%), Positives = 304/333 (91%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
SGEEVQ RLLPKSHGSGK+FPGPRALK++++V+
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVR 333
>gi|302770725|ref|XP_002968781.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
gi|300163286|gb|EFJ29897.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
Length = 444
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/441 (62%), Positives = 325/441 (73%), Gaps = 8/441 (1%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MP+AR +S R+IAHVDLDCFYVQVEQR+QP+LRG PTAV+QYN WKGG IAVGYEAR
Sbjct: 1 MPLARRPASRIRVIAHVDLDCFYVQVEQRRQPQLRGKPTAVIQYNSWKGGACIAVGYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGD AK VCP + LVQVPV KADLS YR+AGSEVV++L+R G+CERASID
Sbjct: 61 KCGVKRSMRGDAAKAVCPDLNLVQVPVLHEKADLSIYRDAGSEVVAVLSRVGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV--KEWLCRCDA 178
EVYLD+T+AAE + + + V EEA SHI+GL +S A + KEW CR DA
Sbjct: 121 EVYLDVTEAAERL---SSKDLSTLVSEEASTSHIVGLPQVRWLESSAKLGTKEWFCRPDA 177
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
D LLACG +I+ ++R+ VL ETEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V
Sbjct: 178 SREDHLLACGAIIIADIRLAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAV 237
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
+ LL +LPI K+ +LGGKLG L+ ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN AR
Sbjct: 238 ESLLATLPISKIGKLGGKLGQELEGELGVKTVGDLLQFSELKLQDMYGPNTGTWLWNTAR 297
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
GI+G+EVQ R LPKSH SGK+FPGPRALKT+ +V +WL +L E L RL DL QN R A
Sbjct: 298 GINGDEVQDRTLPKSHSSGKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTA 357
Query: 359 HTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKT 416
H LT+HAS S + KF SKS PLRYG KI ED+ LF+ L EF S G K
Sbjct: 358 HLLTIHASCHIVSRATEAPKFSSKSRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KE 416
Query: 417 QGSHYSGWRITALSVSASKIV 437
Q S W +T LS++AS I+
Sbjct: 417 QSEITSSWAVTGLSLTASNIM 437
>gi|302822456|ref|XP_002992886.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
gi|300139334|gb|EFJ06077.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
Length = 436
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/439 (61%), Positives = 322/439 (73%), Gaps = 12/439 (2%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MP+AR +S R+IAHVDLDCFYVQVEQR+QP+LRG PTAV+QYN WKGG IAVGYEAR
Sbjct: 1 MPLARRPASRIRVIAHVDLDCFYVQVEQRRQPQLRGKPTAVIQYNSWKGGACIAVGYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGD AK VCP + LVQVPV KADLS YR+AGSEVV++L+R G+CERASID
Sbjct: 61 KCGVKRSMRGDAAKAVCPDLNLVQVPVLHEKADLSIYRDAGSEVVAVLSRVGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLD+T+AA+ + + + V EEA SHI+GL + G KEW CR DA
Sbjct: 121 EVYLDVTEAAKRL---SSKDLSTLVSEEASTSHIVGLPQELGT------KEWFCRPDASR 171
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D LLACG +IV ++R+ VL ETEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+
Sbjct: 172 EDHLLACGAIIVADIRLAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVES 231
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL +LPI K+ +LGGKLG L+ ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI
Sbjct: 232 LLATLPISKIGKLGGKLGQELEGELGVKTVGDLLQFSEVKLQDMYGPNTGTWLWNTARGI 291
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
+G+EVQ R LPKSH SGK+FPGPRALKT+ +V +WL +L E L RL DL QN R AH
Sbjct: 292 NGDEVQDRTLPKSHSSGKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHL 351
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQG 418
LT+HAS + KF SKS PLRYG KI ED+ LF+ L EF S G K Q
Sbjct: 352 LTIHASCHIEGRATEAPKFSSKSRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQS 410
Query: 419 SHYSGWRITALSVSASKIV 437
S W +T LS++AS I+
Sbjct: 411 EITSSWAVTGLSLTASNIM 429
>gi|125527765|gb|EAY75879.1| hypothetical protein OsI_03798 [Oryza sativa Indica Group]
Length = 498
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/361 (68%), Positives = 290/361 (80%), Gaps = 26/361 (7%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQVEQR+ P+LRG PTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASID
Sbjct: 61 KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVAILSTKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES--------------------- 159
EVYLDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S
Sbjct: 121 EVYLDLTDAAKEMLLESPPELLELIFEEATKSNILGLPSVIFVLHDLIVVSLQFDMNVTN 180
Query: 160 -----KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 214
+D + + +V+ WLCR DAD++DKLL+CG +IV +LR++VL+ET+FTCSAGIAHN
Sbjct: 181 RASYVQDVINREDSVRAWLCRADADYQDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHN 240
Query: 215 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 274
KMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL
Sbjct: 241 KMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLL 300
Query: 275 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 334
F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPKSHG GK+FPGP+ALK ASV+
Sbjct: 301 SFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKE 360
Query: 335 W 335
+
Sbjct: 361 F 361
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 674 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 727
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 442 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 495
>gi|168033798|ref|XP_001769401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679321|gb|EDQ65770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/441 (58%), Positives = 316/441 (71%), Gaps = 8/441 (1%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARPDS R+IAH+DLDCFYVQVEQRK+P+LRG P AVVQ+N WKGGGLIAV YEAR
Sbjct: 1 MPVARPDSGETRVIAHLDLDCFYVQVEQRKRPELRGKPVAVVQFNPWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GV R MRGD+AK++CP IELVQVP A G A+++ YR+AG+EVV +L+R G CERASID
Sbjct: 61 KCGVLRCMRGDDAKKMCPDIELVQVPTAHGHANVNYYRDAGTEVVEVLSRGGICERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLD+T+AA A L + P SL + EEA K+HILGLE +DG ++ T EWLC+ +
Sbjct: 121 EVYLDITEAAAARLIKGLP-SLGTLSEEARKTHILGLE-EDGENA-MTAGEWLCQSNVPR 177
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D LLACG LIV ELR VL ET+FTCSAGI HNKMLAKL S M+KPAQQT +P S V
Sbjct: 178 CDALLACGALIVAELRAAVLAETQFTCSAGIGHNKMLAKLTSSMHKPAQQTLIPSSYVPT 237
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL ++P+KK+ LGGKLG SL +LGV T GDL++FS+ KLQE YG NTG WLW++ARG
Sbjct: 238 LLATIPLKKIGHLGGKLGKSLTEDLGVKTPGDLIQFSKLKLQELYGVNTGNWLWDVARGK 297
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
+G+EV+A++LPKS GK+F G AL + SV +WL ++C+EL E+L DLE + R A
Sbjct: 298 NGDEVKAKVLPKSISCGKTFAGRTALTNMTSVMYWLGEMCDELQEKLDIDLEVHNRKAKL 357
Query: 361 LTLHASA-FKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL----GSFGVK 415
L HA+ + + KKFPSKSCP+RYG KI D LF+ GLR+F VK
Sbjct: 358 LVFHAAVQLRGGNPQPGKKFPSKSCPIRYGKEKILADARILFERGLRDFCPVNKSLSPVK 417
Query: 416 TQGSHYSGWRITALSVSASKI 436
+ W +TALS+ A I
Sbjct: 418 GSSNSKCEWAVTALSIGAGGI 438
>gi|156387566|ref|XP_001634274.1| predicted protein [Nematostella vectensis]
gi|156221355|gb|EDO42211.1| predicted protein [Nematostella vectensis]
Length = 345
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 182/344 (52%), Positives = 236/344 (68%), Gaps = 7/344 (2%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IA VD+DCFYVQVEQR+ P+L+G P AVVQYN WKGGG+IAV YEAR GV R+
Sbjct: 2 ASDERVIALVDMDCFYVQVEQRRCPELKGKPCAVVQYNAWKGGGIIAVSYEARACGVTRN 61
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 126
MRGDEAK+ CP I LVQVPV RGKA+L+ YR+AG+EV+ +L CERAS+DE YLDL
Sbjct: 62 MRGDEAKQKCPDIALVQVPVLRGKANLAHYRDAGAEVLEVLTTYCDNCERASVDEAYLDL 121
Query: 127 TDAAEAMLA-ETPPESLDEVDEEALKSHILGLESK--DGNDSKATVKEWLCRCDADHRDK 183
T++A+ L+ T PE +EV + I GL SK D S KEWL + +A +
Sbjct: 122 TNSAQKKLSVMTVPEIAEEVWR---TTAIEGLSSKGSDTTISDELQKEWLSQLEASPYLR 178
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
LA G +I E+R VL++T FTCSAG+A NK+LAKL G+NKP +QT +P S+V L
Sbjct: 179 NLAAGAVIAAEMRHAVLEKTGFTCSAGVATNKVLAKLCCGLNKPDKQTLLPHSAVTNLFK 238
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
++P++K++ LGGKLG+ L +EL V +GDLL+F + L+ +G G L+N+ RGI E
Sbjct: 239 TMPLRKVRHLGGKLGSQLHSELNVEFMGDLLQFKINDLKAQFGSKNGELLYNLCRGIDNE 298
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
V+AR LPKS GK+FPG L T V+ W+ QL EEL ERL
Sbjct: 299 PVRARQLPKSVSCGKNFPGKTKLSTCQQVKFWMEQLVEELHERL 342
>gi|94158209|ref|NP_001035337.1| DNA polymerase eta [Danio rerio]
gi|92098322|gb|AAI15308.1| Zgc:136881 [Danio rerio]
Length = 743
Score = 345 bits (884), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 193/465 (41%), Positives = 274/465 (58%), Gaps = 32/465 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCFYVQVEQR +P+L+ P V QY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGRNMFAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A+++CP +++ +VP A GKADL+ YR A EV+ +++R ERASIDE Y+DLT + +
Sbjct: 67 DARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFAVIERASIDEAYMDLTASVQ 126
Query: 132 AMLAETPPESLDEVDEEALK-SHILGLESKDGN-------DSKATVKEWL----CRCDAD 179
L T S+ ++ + LK +HI G ++ N A +++WL ++
Sbjct: 127 ERLKNT---SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSSSTESS 183
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
D LA G LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P SSV
Sbjct: 184 PADLHLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLSSVP 243
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
L +LPI K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG WL+++ RG
Sbjct: 244 QLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRG 303
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I E V+ R LPKS G K+F G L+T VQ+WL+QL EL ERL D + N R+A
Sbjct: 304 IEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVNGRVAR 363
Query: 360 TLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 418
LT+ S S S+ C L RY K+ D+ + ++ + T G
Sbjct: 364 QLTVGVRQAGGQRSGSF----SRCCALVRYDAMKMTNDSLTIIKS----------LNTAG 409
Query: 419 SHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 461
+H W +T L +SASK S + + + F D S S+
Sbjct: 410 AHQEAWSPALTLLHLSASKFSDAPSSSSAGITGFLSSDAASSPSQ 454
>gi|53134355|emb|CAG32324.1| hypothetical protein RCJMB04_23b13 [Gallus gallus]
Length = 693
Score = 341 bits (875), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 260/439 (59%), Gaps = 34/439 (7%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF++QVEQR P+LRG P AVVQYN+W+GGG+IAV YEAR +GV R M
Sbjct: 7 RVVALVDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWAT 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASIDE YLDLT +A
Sbjct: 67 EARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIDEAYLDLTGSAR 126
Query: 132 AMLAETPPESLDEVDEEALKSHIL-------GLESKDGND-SKATVKEWLCRCDADH--- 180
L E L+ E L + + GL+ D + + ++EWL D+
Sbjct: 127 ERLRELRGRPLEA---ELLPTTFVQGLPAEPGLQPADKEELRRRGLQEWLASLSFDNVNC 183
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D LA G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV
Sbjct: 184 PDLQLAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQ 243
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L +P+ ++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RGI
Sbjct: 244 LFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGI 303
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
E V+ R LP+S G K+FPG AL T VQHWL QL EL RL D QN R+A
Sbjct: 304 DDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQ 363
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
L + D+R S+ C + RY KI D F L Q G+
Sbjct: 364 LMV----VIRMQGDTRL---SRFCAVTRYDAQKIFNDAFALIQ----------NCNMAGA 406
Query: 420 HYSGWRITALSV--SASKI 436
H + W +SV +ASK
Sbjct: 407 HQAAWSPPLISVHLAASKF 425
>gi|50838832|ref|NP_001001304.1| DNA polymerase eta [Gallus gallus]
gi|31442180|dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 341 bits (875), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 260/439 (59%), Gaps = 34/439 (7%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF++QVEQR P+LRG P AVVQYN+W+GGG+IAV YEAR +GV R M
Sbjct: 7 RVVALVDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWAT 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASIDE YLDLT +A
Sbjct: 67 EARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIDEAYLDLTGSAR 126
Query: 132 AMLAETPPESLDEVDEEALKSHIL-------GLESKDGND-SKATVKEWLCRCDADH--- 180
L E L+ E L + + GL+ D + + ++EWL D+
Sbjct: 127 ERLRELRGRPLEA---ELLPTTFVQGLPAEPGLQPADKEELRRRGLQEWLASLSFDNVNC 183
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D LA G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV
Sbjct: 184 PDLQLAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQ 243
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L +P+ ++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RGI
Sbjct: 244 LFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGI 303
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
E V+ R LP+S G K+FPG AL T VQHWL QL EL RL D QN R+A
Sbjct: 304 DDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQ 363
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
L + D+R S+ C + RY KI D F L Q G+
Sbjct: 364 LMV----VIRMQGDTRL---SRFCAVTRYDAQKIFNDAFALIQ----------NCNMAGA 406
Query: 420 HYSGWRITALSV--SASKI 436
H + W +SV +ASK
Sbjct: 407 HQAAWSPPLISVHLAASKF 425
>gi|260803774|ref|XP_002596764.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
gi|229282024|gb|EEN52776.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
Length = 354
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/352 (52%), Positives = 227/352 (64%), Gaps = 16/352 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA VD+DCFYVQVEQR+ P LRG P AVVQY +W+GGG+IAVGYEAR GV R MRGD
Sbjct: 5 RVIALVDMDCFYVQVEQRRDPSLRGKPCAVVQYKKWQGGGIIAVGYEARAKGVTRQMRGD 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK+ CP+I LV+VP +RGKADL+ YR+AG EV+ +L + RC ERASIDE Y+DLT+
Sbjct: 65 EAKKKCPEITLVRVPESRGKADLTRYRDAGREVIEVLCKFSRCVERASIDEAYIDLTEEV 124
Query: 131 EAMLAETPPESLDEVDEEALKS-HILGLESKDGNDSKAT--------VKEWLCRC---DA 178
L E P D V + L S H+ G ++ S + V +WL DA
Sbjct: 125 MKRLEERGP---DSVTVDMLSSTHVAGWQTDTAGQSSESEEINLAVGVYQWLDSLRMRDA 181
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
D+ LA G I E+R V +ET F CSAGI HNK+LAKL G++KP QQT +P +SV
Sbjct: 182 SMYDRRLAVGAAIAEEMRAAVERETGFHCSAGIGHNKVLAKLCCGLHKPKQQTVLPHASV 241
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L +LPIKK++ GGKLG SL ELGV +G L FSE +LQ G GTWL+N+ R
Sbjct: 242 PQLYSTLPIKKVRGCGGKLGASLTEELGVEYMGQLAAFSEKELQAKCGDKCGTWLYNLCR 301
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
GI E V+ R + +S G GK+FPG L T V HWL QL EL+ERL D
Sbjct: 302 GIDYEAVKDRQVAQSIGCGKNFPGRECLDTKEKVLHWLTQLTSELAERLQKD 353
>gi|348501702|ref|XP_003438408.1| PREDICTED: DNA polymerase eta [Oreochromis niloticus]
Length = 685
Score = 338 bits (866), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 198/492 (40%), Positives = 274/492 (55%), Gaps = 48/492 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCFYVQVEQR P LR P V QY WKGG +IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALRNTPCVVAQYKTWKGGSIIAVSYEARAHGVTRNMWVD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP +++ +V + GKADL++YR A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTNYREASVEVIEVMSRFAVIERASIDEAYMDLTAAVQ 126
Query: 132 AMLAETPPESLDE----------------VDEEALKSHILGLESKDGNDSKATVKEWL-- 173
L + ++ EE+ + +L E + +++WL
Sbjct: 127 QRLKNMTDKQIEPSLLRTTYIQGYPQSSPAAEESAEDTVLDKEEQRSRG----LQQWLES 182
Query: 174 ----CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 229
+ + L G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +
Sbjct: 183 LTFPSVGEQSSAELQLTVGALIVEEMRAAVEKHTGFRCSAGISHNKVLAKLACGLNKPNR 242
Query: 230 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 289
QT +P SV L SLP+ K++ LGGKLGTS+ LG+ +GDL +FS+ +L++ +G T
Sbjct: 243 QTVLPLDSVTELFSSLPVGKIRNLGGKLGTSITETLGIENMGDLTRFSKAQLEQHFGEKT 302
Query: 290 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 349
G WL+++ RGI E V+ R LPKS G K+FPG +L T VQ+WL+QL EL ERL
Sbjct: 303 GQWLYDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTK 362
Query: 350 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREF 408
D E N R+A LT+ D R S+ C L RY KI DTF + ++
Sbjct: 363 DREVNGRVAKMLTVGVRQL----GDKRMSSFSRCCALVRYEATKISSDTFAIIKS----- 413
Query: 409 LGSFGVKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDN 466
+ T G+H + W ++ L +SASK V S I + + STS Q P
Sbjct: 414 -----LNTAGNHQAAWTPPLSMLYLSASKFSDV-SSAGGIAGFLSS----DSTSTQPPRE 463
Query: 467 FIDAAPLSPSGS 478
+P +GS
Sbjct: 464 PKHVSPCKQTGS 475
>gi|443700616|gb|ELT99496.1| hypothetical protein CAPTEDRAFT_172544 [Capitella teleta]
Length = 620
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 193/464 (41%), Positives = 267/464 (57%), Gaps = 28/464 (6%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+IA VD+DCFYVQVEQR +P+ +G P AVVQY +KGGG+IAVGYEAR GV R M G
Sbjct: 2 GRVIALVDMDCFYVQVEQRLKPEFKGHPCAVVQYRTYKGGGIIAVGYEARALGVTRGMMG 61
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDA 129
+A+E CP I L +VP GKADL+ YR AG+EV+ +L +C ERASIDE Y+DLTD
Sbjct: 62 QDAQEKCPNIHLFRVPETEGKADLTLYREAGAEVIEVLTGFSKCVERASIDEAYVDLTDE 121
Query: 130 AEAMLAETPPESLDEVDEEAL-KSHILGLESKDGNDSKATVKE-----WL-CRCDA---D 179
LA E E+ + L +++LG E ++ K+ +E WL + DA +
Sbjct: 122 VHKRLAGM--EENQEISPDWLPNTYVLGCEEEEKCTDKSVQRERGLITWLRSQSDAHTVN 179
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
+K LA G +IV E+R +V T F CSAGIA NKMLAKL G+NKP +QT +PFS++
Sbjct: 180 EHEKQLAVGAVIVEEMRARVHTVTGFRCSAGIASNKMLAKLVCGINKPNKQTLLPFSNIL 239
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
+ +KK++ GGK G S+ +L V T+GD+ +FS ++LQE +G TG+WL++ RG
Sbjct: 240 HFFGGVKVKKVRGFGGKFGESVCEQLQVETMGDIRRFSRNQLQECFGDKTGSWLYDTCRG 299
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
E+V R L KS G K+F GP L T V+ WL+++ +E+ ERL D N R+A
Sbjct: 300 QETEDVIDRQLTKSVGCSKNFRGPEMLVTKEQVKLWLSRMSKEIEERLLKDRASNNRVAK 359
Query: 360 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
+L +H + S + S +RY K+ +D + L R L
Sbjct: 360 SLHVHIQYVVNKKVTSASRCASL---VRYNAQKLADDAYLLLSKFNRSLL---------- 406
Query: 420 HYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 461
H S W IT + +SASK + + I + P F S S+
Sbjct: 407 HQSSWSPPITCMGISASKFSDLSNTGRDIKSFLQDPSAFPSVSQ 450
>gi|432904760|ref|XP_004077403.1| PREDICTED: DNA polymerase eta-like [Oryzias latipes]
Length = 708
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 187/452 (41%), Positives = 259/452 (57%), Gaps = 44/452 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCFYVQVEQR P LR P V QY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALRNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP +++ +V + GKADL+ YR+A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTHYRDASVEVIEVMSRFAVIERASIDEAYMDLTAAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT------------------VKEWL 173
L T E + LK+ + + G D + +++W+
Sbjct: 127 QRLKTTTEEQMSPC---LLKTTYIQGYPQSGLDPPSADASPEEMILYKEELRSKGLQQWM 183
Query: 174 CRCDADHRDKL------LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
+L L G LIV E+R V K+T F CSAGI+HNK+LAKLA G+NKP
Sbjct: 184 ESLPTPSSGELNCAELQLTMGALIVEEMRAAVEKQTGFRCSAGISHNKVLAKLACGLNKP 243
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
+QT +P SV L +SLPI K++ LGGK+G S+ L V +GDL +FS+ +L + +G
Sbjct: 244 NRQTVLPLESVTELFNSLPIGKIRNLGGKMGASIIETLKVENMGDLTRFSQSQLVQHFGE 303
Query: 288 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
TG WL+++ RG+ E V+ R LPKS G K+FPG +L T VQ+WL+QL EL ERL
Sbjct: 304 KTGQWLYDLCRGVESEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERL 363
Query: 348 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLR 406
D E N R+A LT+ D R S+ C L Y AK+ D+F + ++
Sbjct: 364 NKDKETNGRVAKLLTVGVRQL----GDKRPSSFSRCCALVHYEAAKLSSDSFAIIKS--- 416
Query: 407 EFLGSFGVKTQGSHYSGWR--ITALSVSASKI 436
+ T G+H + W +T L +SASK
Sbjct: 417 -------LNTAGNHQAAWTPPLTLLHLSASKF 441
>gi|60686908|gb|AAX35543.1| DNA polymerase eta [Xenopus laevis]
Length = 684
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 196/445 (44%), Positives = 255/445 (57%), Gaps = 32/445 (7%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+S R++A VD+DCFYVQVEQR P L+ P VVQY WKGGG+IAV YEAR +GV R
Sbjct: 2 ESGQERVVALVDMDCFYVQVEQRMNPALKNKPVVVVQYKTWKGGGIIAVSYEARAFGVTR 61
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M D+AK++C ++L +V A GKADL+ YR A EV+ +++R ERASIDE Y+DL
Sbjct: 62 NMFADDAKKLCADLQLARVREAHGKADLTHYREASVEVMEVMSRFAVVERASIDEAYIDL 121
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCR----------- 175
TD+ + L E + + E LK+ + + G D + KE L R
Sbjct: 122 TDSVQKRLREM---GVAPISGELLKNTYVQGFPQCGMDRDSLSKEELRRHGLEQWLESLP 178
Query: 176 -CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
D D LA G +IV E+R V +ET F CSAGIAHNK+LAKLA G+NKP +QT +
Sbjct: 179 VGDPHSADVKLAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILC 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SV GL LPI K++ LGGKLGTS++ L V +G L +F+ LQ +G TG+WL+
Sbjct: 239 QGSVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ RGI E V+ R LPKS G K+FPG +L T VQ+WL QL EL RL D + N
Sbjct: 299 SLCRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDAN 358
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 413
R+A LT+ + S S+ C L RY KI D F L L SF
Sbjct: 359 NRVAKLLTVGLNQMGKRLYGSM----SRCCALTRYDAQKISSDAFVL--------LKSFN 406
Query: 414 VKTQGSHYSGWR--ITALSVSASKI 436
G H + W +T L +SASK
Sbjct: 407 AA--GMHQAAWSPPLTLLQLSASKF 429
>gi|148227394|ref|NP_001087074.1| DNA-directed DNA polymerase eta [Xenopus laevis]
gi|50417752|gb|AAH77989.1| Polh-prov protein [Xenopus laevis]
Length = 684
Score = 331 bits (849), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 196/445 (44%), Positives = 255/445 (57%), Gaps = 32/445 (7%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+S R++A VD+DCFYVQVEQR P L+ P VVQY WKGGG+IAV YEAR +GV R
Sbjct: 2 ESGQERVVALVDMDCFYVQVEQRMNPALKNKPVVVVQYKTWKGGGIIAVSYEARAFGVTR 61
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M D+AK++C ++L +V A GKADL+ YR A EV+ +++R ERASIDE Y+DL
Sbjct: 62 NMFADDAKKLCADLQLARVREAHGKADLTHYREASVEVMEVMSRFAVVERASIDEAYIDL 121
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCR----------- 175
TD+ + L E + + E LK+ + + G D + KE L R
Sbjct: 122 TDSVQKRLREM---GVAPISGELLKNTYVQGFPQCGMDRDSLSKEELRRHGLEQWLESLP 178
Query: 176 -CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
D D LA G +IV E+R V +ET F CSAGIAHNK+LAKLA G+NKP +QT +
Sbjct: 179 VGDPHSADVKLAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILC 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SV GL LPI K++ LGGKLGTS++ L V +G L +F+ LQ +G TG+WL+
Sbjct: 239 QGSVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ RGI E V+ R LPKS G K+FPG +L T VQ+WL QL EL RL D + N
Sbjct: 299 SLCRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDAN 358
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 413
R+A LT+ + S S+ C L RY KI D F L L SF
Sbjct: 359 NRVAKLLTVGLNQMGKRLYGSM----SRCCALTRYDAQKISSDAFVL--------LKSFN 406
Query: 414 VKTQGSHYSGWR--ITALSVSASKI 436
G H + W +T L +SASK
Sbjct: 407 AA--GMHQAAWSPPLTLLQLSASKF 429
>gi|410901122|ref|XP_003964045.1| PREDICTED: DNA polymerase eta-like [Takifugu rubripes]
Length = 707
Score = 331 bits (849), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 189/446 (42%), Positives = 262/446 (58%), Gaps = 41/446 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCFYVQVEQR P L+ P V QY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALKNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP +++ +V + GKADL+ YR A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTFYREASVEVIEVMSRFAVIERASIDEAYMDLTAAVQ 126
Query: 132 AMLAETPPESLDE--VDEEALK-SHILGL---------ESKDGNDSKATVKEWLCRC--- 176
L ++L++ +D LK ++I G ++D S+ V++WL
Sbjct: 127 QRL-----KNLNDSPIDAHLLKATYIQGYPQTTPERPAAAEDEQRSRG-VQQWLAMLPLP 180
Query: 177 ---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
+ + L G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +QT +
Sbjct: 181 AVGEQSSAELQLTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLL 240
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
P SV+ L SLP+ K++ LGGKLG S+ LGV +G+L +FS +L + +G TG WL
Sbjct: 241 PLDSVRDLFSSLPVGKIRNLGGKLGASITETLGVENMGELTRFSLAQLGQHFGEKTGQWL 300
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+++ RGI E V+ R LPKS G K+FPG +L T VQ+WL+QL EL ERL D E
Sbjct: 301 YDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTKDREV 360
Query: 354 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 412
N R+A LT+ D R S+ C L RY K+ D+F + ++
Sbjct: 361 NGRVAKLLTVGVRQL----GDKRANSFSRCCALVRYEAPKLATDSFAIIRS--------- 407
Query: 413 GVKTQGSHYSGWR--ITALSVSASKI 436
+ T G+H W + L +SASK
Sbjct: 408 -LNTAGAHQETWTPPLAMLHLSASKF 432
>gi|321458271|gb|EFX69342.1| hypothetical protein DAPPUDRAFT_228708 [Daphnia pulex]
Length = 695
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 189/457 (41%), Positives = 263/457 (57%), Gaps = 17/457 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A +D+DCFYVQVE+R+ P +G P VVQY +WKGGG+I+V YEAR GV + MRGD
Sbjct: 8 RVVALIDMDCFYVQVEERENPGNKGKPACVVQYKKWKGGGIISVNYEARAQGVTKQMRGD 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EA+E CP L +VP RGKADL+ YR+ G EV+ ++ G ERASIDE Y+D+T
Sbjct: 68 EAREKCPDCILYRVPEQRGKADLTRYRDGGKEVIDVMCSFGVVVERASIDEAYIDMTVVI 127
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWL---CRCDADHRDKLLAC 187
+ ML+++ ++D EE ++ +G D +D K V WL + + D L
Sbjct: 128 DKMLSDSTATAIDL--EELPNTYFVGW-GNDTDDVKG-VHGWLQALSEGNYNDNDWKLTY 183
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
G ++V ++R V ++T F CSAGI++NKMLAKLA G+NKP +QT +PF SV+ + P+
Sbjct: 184 GAILVEKMRAAVYEKTGFRCSAGISNNKMLAKLACGINKPNKQTVLPFRSVEEFFTTFPL 243
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
KK++ LGGKLG L+ E TT+ D++K E LQE + T TWL+ ARG+ E V +
Sbjct: 244 KKVRNLGGKLGLVLREEFHCTTMADIVKIPERVLQERFDSKTATWLFWYARGVDHESVSS 303
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
R LPKS G K+F G AL + + HWL +LC E+SERL D E N R A LTL
Sbjct: 304 RRLPKSIGCNKNFTGLAALDSREKISHWLEELCAEVSERLEKDRETNNRTAKLLTLTVRL 363
Query: 368 FKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 427
+ D R ++S PL K+ ++ A L QG+ +T
Sbjct: 364 ----EGDIRPYSYTRSIPLTSSYEKM-----HMANACLAVISKENPCFKQGNTRVPVVVT 414
Query: 428 ALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP 464
L VSASK V L I ++F + + E+ P
Sbjct: 415 CLGVSASKFVDQLENNSRIDRFFVTKNSAETNKEKEP 451
>gi|73973002|ref|XP_532150.2| PREDICTED: DNA polymerase eta [Canis lupus familiaris]
Length = 712
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 190/454 (41%), Positives = 258/454 (56%), Gaps = 24/454 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ IL+R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G D K + +WL D+
Sbjct: 127 ERLQNLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNNTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPISKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F + + + G+KT S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKN-----CNTSGIKTDWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K +C+ + F D
Sbjct: 418 ----PLTMLFLCATKFSAPAPSSCTDITTFLSSD 447
>gi|340368085|ref|XP_003382583.1| PREDICTED: DNA polymerase eta-like [Amphimedon queenslandica]
Length = 583
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 186/441 (42%), Positives = 263/441 (59%), Gaps = 26/441 (5%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D +++ VD+DCFYVQVE+R P+L+ P A+VQYN+W+GG +IAV YEAR YGVKR
Sbjct: 3 DGGSGKVVVLVDMDCFYVQVEKRLHPELKDKPCAIVQYNKWQGGSIIAVDYEARKYGVKR 62
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLD 125
S++G EAKE CP I LVQVP R KADLS+YR A EV+ +L+ ERASIDE +LD
Sbjct: 63 SLKGKEAKEKCPGIHLVQVPEKRRKADLSNYRKASGEVMKVLSGFTSVIERASIDEAFLD 122
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS-----KATVKEWL-CRCDAD 179
LT+ + + +SL E + +H+ G D + + +W C +D
Sbjct: 123 LTEPVKDYINSNSFDSL-EFHADLKSTHVAGCNDDDDTHKDDCDLRISRGDWFKSSCSSD 181
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
R +L ++V +R +L E FTCSAGI+HNKMLAKLA+GM+KP QQT +P S V
Sbjct: 182 ER--VLIVAAILVQRIRETILNEVGFTCSAGISHNKMLAKLAAGMHKPNQQTILPQSQVD 239
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
+ + +KK++ LGGKLG +Q++L + VG L ++S LQE +G TG+WL+ + RG
Sbjct: 240 VVFSTTLLKKVRHLGGKLGEQVQDKLKIECVGQLQEYSLKVLQEKFGLKTGSWLYELCRG 299
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I E++ R++ KS G GK+FPGP LKT +V++WL QL EL ERL D+ +N R A
Sbjct: 300 ICHEKISNRIITKSIGCGKNFPGPSKLKTAKAVKYWLEQLSRELVERLEEDMTENTRQAQ 359
Query: 360 TLTLHASAFKSSDSDSRK-KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 418
++T+H + S +R PS Y T+ I +++N G + V +
Sbjct: 360 SITVHFLPEGQASSVARTFALPS------YNTSLIVNNSWNAINKGHKP------VTNEE 407
Query: 419 SHYSGWR--ITALSVSASKIV 437
SH + W I + +SA K V
Sbjct: 408 SHLT-WTTGILNIHLSAGKFV 427
>gi|344263722|ref|XP_003403945.1| PREDICTED: DNA polymerase eta [Loxodonta africana]
Length = 718
Score = 325 bits (833), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 189/450 (42%), Positives = 258/450 (57%), Gaps = 24/450 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AV QY WKGGG+IAV YEAR +GV RSM D
Sbjct: 10 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVAQYRSWKGGGIIAVSYEARAFGVARSMWAD 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + LVQV +RGKADL+ YR A EV+ +++R ERASIDE ++DLT A
Sbjct: 70 DAKKLCPDLLLVQVHESRGKADLTKYREASVEVMEVMSRFAGIERASIDEAFIDLTSAVR 129
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G K ++ +WL D+
Sbjct: 130 ERLQKLQGQPISADLLPSTYIEGLPQGYTTTEGTVRKEEMRKQGLFQWLDSLQIDNTASP 189
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP QT V SV L
Sbjct: 190 DLQLTMGAVIVEEVRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNSQTLVSHGSVPQL 249
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 250 FSQMPITKVRNLGGKLGASVVGILGIEYMGELTQFTESQLQSHFGEKNGSWLYAVCRGIE 309
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G GK+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 310 HDPVKPRQLPKTIGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRMATQL 369
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
T+ D R + C L Y K+ D F A LR + G++T+ S
Sbjct: 370 TVTIRV----QGDKRLSSLRRCCALTHYDAHKMSHDAF----AVLRN-CNTSGIQTEWSP 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L +SA+K +C + F
Sbjct: 421 ----PLTMLFLSATKFYASGPSSCPDITVF 446
>gi|390332295|ref|XP_001183938.2| PREDICTED: DNA polymerase eta-like [Strongylocentrotus purpuratus]
Length = 774
Score = 325 bits (832), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 190/445 (42%), Positives = 261/445 (58%), Gaps = 29/445 (6%)
Query: 27 EQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP 86
EQR+ P L+G P AVVQYN WKGG +IAV YEAR +GV R MRG EA+ CP I+LV VP
Sbjct: 160 EQRRDPTLKGKPAAVVQYNSWKGGAIIAVSYEARAFGVTRQMRGAEARGKCPAIQLVTVP 219
Query: 87 VARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA--ETPPESLD 143
RGKADL+ YR AG+EV+++L + ERAS+DE Y+D+TD + LA E + LD
Sbjct: 220 ENRGKADLTRYREAGAEVITVLCKYSDSVERASVDEAYVDVTDQVQTRLAQMEDQGQVLD 279
Query: 144 --EVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVL 200
++ + + H + E D D K ++ WL AD K L G LI E+R V
Sbjct: 280 PEQLHQTFIAGHDVAEEGVDIEDVRKRGLETWLT--SADLATKRLGVGALIAEEMRAAVF 337
Query: 201 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 260
K+T F CSAGI+HNKMLAK+A G +KP +Q+ +P + + ++PI+K + LGGKLG S
Sbjct: 338 KDTGFRCSAGISHNKMLAKIACGFHKPNRQSVLPPEGLDKVYKTIPIRKFRNLGGKLGHS 397
Query: 261 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
+ +LGV +GDLL+++E +LQ+ Y TGTWL++I RGI E V+ R L KS G K+F
Sbjct: 398 ISEDLGVEYMGDLLRYTEKQLQKRYSEKTGTWLYSICRGIDDEPVRPRQLAKSTGCSKTF 457
Query: 321 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH-ASAFKSSDSDSRKKF 379
PG AL T V+HW L EE+ RL + E N R A LT+ A K + +
Sbjct: 458 PGKNALDTRDKVKHWFRSLAEEVEHRLLREEETNNRTAKHLTVSVGQAGKPLMTTA---- 513
Query: 380 PSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKI 436
S+SC + + + KI +D F++ Q + G+H + W IT L +SASK
Sbjct: 514 -SRSCAIHQISSEKIAKDCFSVIQ----------NLNHAGNHQAAWSPAITYLGISASKF 562
Query: 437 VPVLSGTCSIMKYF--NGPDKFGST 459
V S ++ F +GP K +T
Sbjct: 563 VEGGSSKSGSIQSFLSSGPSKPATT 587
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ +D+DCFYVQVEQR+ P L+G P AVVQYN WKGG +IAV YEAR +GV R MRG
Sbjct: 3 RVVILIDMDCFYVQVEQRRNPTLKGKPAAVVQYNSWKGGAIIAVSYEARAFGVTRQMRGA 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ CP I+LV VP RGKADL+ YR AG+EV+++L + ERAS+DE Y+D+TD
Sbjct: 63 EARGKCPAIQLVTVPENRGKADLTRYREAGAEVITVLCKYSDSVERASVDEAYVDVTDQV 122
Query: 131 EAMLAE 136
+ LA+
Sbjct: 123 QTRLAQ 128
>gi|301757340|ref|XP_002914510.1| PREDICTED: DNA polymerase eta-like [Ailuropoda melanoleuca]
gi|281345709|gb|EFB21293.1| hypothetical protein PANDA_002412 [Ailuropoda melanoleuca]
Length = 712
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/410 (43%), Positives = 240/410 (58%), Gaps = 19/410 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV RSM D
Sbjct: 7 RVVVLVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKADL+ YR A EV+ +++R ERASIDE ++DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKADLTKYREASVEVMGVMSRFAGIERASIDEAFIDLTGAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G D K + +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPTTYIEGLPQGRTTAEGTDQKEETRKQGLFQWLESLRIDNTTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + KET F CSAGI+HNK+LAKLA G+NKP QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIEKETGFQCSAGISHNKVLAKLACGLNKPNHQTLVSLGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI +++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPISRIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYGMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R+A L
Sbjct: 307 HDPVRPRQLPKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ----AGLR 406
+ D R + C L RY K+ D F + + +G+R
Sbjct: 367 AVIIRV----QGDKRLSSVRRCCALTRYDAHKMSHDAFAVIRNCNTSGIR 412
>gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris]
Length = 820
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 193/494 (39%), Positives = 280/494 (56%), Gaps = 46/494 (9%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+SS R++ +D+DCF+ QVE + QP+ G P AVVQYN+WK GG+IAV YEAR YGV R
Sbjct: 3 NSSNDRVVVLIDMDCFFCQVETKLQPEYAGKPLAVVQYNQWKLGGIIAVNYEAREYGVTR 62
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVY 123
MRG+EAKE CP + L VP RGKAD S YR+AG EV++++ K C ERAS+DE Y
Sbjct: 63 HMRGEEAKEKCPDVVLASVPCLRGKADTSRYRSAGREVINVI--KKHCNIIERASVDEAY 120
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRCDAD 179
LD+TD ++ T SL+ + + + ++G ND SK T K W+ +
Sbjct: 121 LDITDLVCKKMS-TYSISLNHLVTQLSNTFVVGYSEVGKNDEEERSKGT-KTWIMNVFEN 178
Query: 180 HRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
D + LA LIV E+R + +T F CSAGIA NK+LAKLA G++KP +QT +P +
Sbjct: 179 LEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAENKILAKLACGLHKPNRQTILPAT 238
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+V L +LPIKK++ LGGK GT + L +GDL+++S LQ+ + TG WL+NI
Sbjct: 239 AVSTLYSTLPIKKVRNLGGKFGTVVVESLNCNVMGDLVQYSLQYLQKRFDEKTGLWLYNI 298
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
ARGI E V RL+ KS G+ K FPG +A+ ++ ++HW +L E+ ERL DLE+N+R
Sbjct: 299 ARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENER 358
Query: 357 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 416
A +T+ +++ + S+ S+SC T N ++ G+ ++
Sbjct: 359 RATLMTICYQYYQNKATVSQ----SRSC------------TLNSYKP------GNMAIRC 396
Query: 417 QG--SHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS 474
S + I L +SA K +P G+ + +F ++E P IDA +
Sbjct: 397 VQIISKSTQCPIAYLGISAGKFIPA-KGSGNFRNFF-------KSNESEPHKKIDAQTKN 448
Query: 475 PSGSESYSTLNSTE 488
YS N+T+
Sbjct: 449 TKVESIYSVENTTK 462
>gi|395534246|ref|XP_003769157.1| PREDICTED: DNA polymerase eta [Sarcophilus harrisii]
Length = 704
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 184/450 (40%), Positives = 261/450 (58%), Gaps = 24/450 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRENPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV RGKADL+ YR A EV+ +++R ER+SIDE Y+DLT+A +
Sbjct: 67 DAKKLCPDLLLAQVRETRGKADLTKYREASVEVMKVMSRFAVIERSSIDEAYVDLTNAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC---DADHR 181
L + P + + + ++ G + +G+ K ++ +WL D+
Sbjct: 127 ERLQKLQAQPVTANSLASTYIQGFPHGTRALEGSIQKDEIRKQGVIQWLESLPFDDSGSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
LPI K++ LGGKLG S+ + LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSHLPISKIRNLGGKLGASVIDTLGVEYMGELTQFTELQLQNHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T V+ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKIALATQEQVKWWLLQLAQELEERLIKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
T+ D R + C L Y ++ D F L + + G+K + S
Sbjct: 367 TVSIRV----QGDRRLSSLRRCCALVCYDAHRMSNDAFALIRN-----CNTAGIKAEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L + A+K P + +C+ + F
Sbjct: 418 ----PLTMLFLCATKFSPSVPPSCTDITSF 443
>gi|402867082|ref|XP_003897697.1| PREDICTED: DNA polymerase eta isoform 1 [Papio anubis]
Length = 712
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 259/454 (57%), Gaps = 24/454 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K +C+ + F D
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|403261352|ref|XP_003923087.1| PREDICTED: DNA polymerase eta isoform 1 [Saimiri boliviensis
boliviensis]
Length = 710
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 186/450 (41%), Positives = 259/450 (57%), Gaps = 24/450 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F++ + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQTEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L + A+K +C+ + F
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSF 443
>gi|383419309|gb|AFH32868.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 187/455 (41%), Positives = 260/455 (57%), Gaps = 24/455 (5%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
AR++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM
Sbjct: 6 ARVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWA 65
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 130
D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT +
Sbjct: 66 DDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSSV 125
Query: 131 EAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR-- 181
+ L + P S D + ++ G + + K ++ +WL D+
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS 185
Query: 182 -DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV
Sbjct: 186 PDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQ 245
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 246 LFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGI 305
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A
Sbjct: 306 EHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQ 365
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
L + D R + C L RY K+ D F + + + G++T+ S
Sbjct: 366 LAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNASGIQTEWS 416
Query: 420 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K +C+ + F D
Sbjct: 417 P----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|5729982|ref|NP_006493.1| DNA polymerase eta [Homo sapiens]
gi|59798441|sp|Q9Y253.1|POLH_HUMAN RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
gi|5457144|gb|AAD43810.1|AF158185_1 xeroderma pigmentosum variant RAD30 [Homo sapiens]
gi|5138988|dbj|BAA81666.1| DNA polymerase eta [Homo sapiens]
gi|11463971|dbj|BAB18601.1| DNA polymerase eta [Homo sapiens]
gi|34732732|gb|AAQ81300.1| polymerase (DNA directed), eta [Homo sapiens]
gi|119624615|gb|EAX04210.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
gi|119624616|gb|EAX04211.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
Length = 713
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|55626670|ref|XP_518497.1| PREDICTED: DNA polymerase eta isoform 4 [Pan troglodytes]
gi|410211556|gb|JAA02997.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410262340|gb|JAA19136.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410302290|gb|JAA29745.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330903|gb|JAA34398.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330905|gb|JAA34399.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330907|gb|JAA34400.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330909|gb|JAA34401.1| polymerase (DNA directed), eta [Pan troglodytes]
Length = 713
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|193785802|dbj|BAG51237.1| unnamed protein product [Homo sapiens]
Length = 701
Score = 322 bits (825), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens]
Length = 818
Score = 322 bits (825), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 193/494 (39%), Positives = 280/494 (56%), Gaps = 46/494 (9%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+SS R++ +D+DCF+ QVE + QP+ G P AVVQYN+WK GG+IAV YEAR YGV R
Sbjct: 3 NSSNDRVVVLIDMDCFFCQVETKLQPEYAGKPLAVVQYNQWKLGGIIAVNYEAREYGVTR 62
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVY 123
MRG+EAKE CP I L VP RGKAD S YR+AG EV++++ K C ERAS+DE Y
Sbjct: 63 HMRGEEAKEKCPDIVLASVPCLRGKADTSRYRSAGREVINVI--KKHCNIIERASVDEAY 120
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRCDAD 179
LD+TD ++ T SL+ + + + ++G ND SK T + W+ +
Sbjct: 121 LDITDLVCKRMS-TYSISLNHLVTQLSNTFVVGYSEVGKNDEEERSKGT-ETWIMNVFEN 178
Query: 180 HRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
D + LA LIV E+R + +T F CSAGIA NK+LAKLA G++KP +QT +P +
Sbjct: 179 LEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAGNKILAKLACGLHKPNRQTILPAA 238
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+V L +LPIKK++ LGGK G + L +GDLL++S LQ+ + TG+WL+NI
Sbjct: 239 AVSTLYSTLPIKKVRNLGGKFGDVVVESLNCNVMGDLLQYSLQYLQKRFDEKTGSWLYNI 298
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
ARGI E V RL+ KS G+ K FPG +A+ ++ ++HW +L E+ ERL DLE+N+R
Sbjct: 299 ARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENER 358
Query: 357 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 416
A +T+ +++ + S+ S+SC T N ++ G+ ++
Sbjct: 359 RATLMTICYQYYQNKATVSQ----SRSC------------TLNSYKP------GNMAIRC 396
Query: 417 QG--SHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS 474
S + I L +SA K +P G+ + +F ++E P IDA +
Sbjct: 397 VQIISKSTQCPIAYLGISAGKFIPA-KGSGNFRNFF-------KSNESEPHKKIDAQTEN 448
Query: 475 PSGSESYSTLNSTE 488
YS N+T+
Sbjct: 449 TKVESIYSVENTTK 462
>gi|395832422|ref|XP_003789270.1| PREDICTED: DNA polymerase eta [Otolemur garnettii]
Length = 414
Score = 322 bits (825), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 241/406 (59%), Gaps = 23/406 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQ++ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQQQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEVMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRCDADH 180
L + P S D + ++I GL +A KE WL +D
Sbjct: 127 ERLQKLQGQPISADLLP----TTYIEGLPRNPATAEEAVQKEKMRNQGLLQWLHSLQSDD 182
Query: 181 R---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D L G +IV E+R + K+T F CSAGI+HNK+LAKLA G+NKP +QT V +S
Sbjct: 183 STSPDLQLTVGAMIVEEMRAAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHAS 242
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 243 VPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGGKNGSWLYAMC 302
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 303 RGIEHDPVKPRQLPKTIGCSKNFPGKTALSTREQVQWWLLQLAQELEERLTKDRNDNDRV 362
Query: 358 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
A LT+ D R + C L RY K+ D F + +
Sbjct: 363 ATQLTVSIRV----QGDKRLSSLRRCCALSRYDAYKMSHDAFAVIK 404
>gi|380813878|gb|AFE78813.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 322 bits (824), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 186/454 (40%), Positives = 259/454 (57%), Gaps = 24/454 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT + +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSSVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K +C+ + F D
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|431838335|gb|ELK00267.1| DNA polymerase eta [Pteropus alecto]
Length = 712
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 186/450 (41%), Positives = 257/450 (57%), Gaps = 24/450 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ IL+R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVLESRGKANLTKYREASVEVMEILSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL ++
Sbjct: 127 ERLQKLQGQPISADLLPTTYIEGLPQGPTTAEETVQKEEMRKRGLLQWLDSLQIENTNSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSHIPISKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F + + + GV+T+ S
Sbjct: 367 VVSIRV----QGDKRLSTLRRCCALTRYDAHKMSHDAFAVIRN-----CNTSGVQTEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L + A+K +C+ + F
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITVF 443
>gi|296198265|ref|XP_002746624.1| PREDICTED: DNA polymerase eta [Callithrix jacchus]
Length = 709
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/450 (40%), Positives = 258/450 (57%), Gaps = 24/450 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRKKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADWLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT + SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLLSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIHKIRSLGGKLGASVTEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F++ + + G++T+ S
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQTEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L + A+K +C+ + F
Sbjct: 418 ----PLTMLFLCATKFSASAPSSCTDITSF 443
>gi|402867084|ref|XP_003897698.1| PREDICTED: DNA polymerase eta isoform 2 [Papio anubis]
Length = 414
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|403261354|ref|XP_003923088.1| PREDICTED: DNA polymerase eta isoform 2 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 240/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F++ +
Sbjct: 367 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIK 404
>gi|299856835|pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
gi|374977693|pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
gi|386783428|pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 10 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 70 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 129
Query: 132 AML--AETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 130 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 189
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 190 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 249
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 250 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 309
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 310 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 369
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 370 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 407
>gi|16041729|gb|AAH15742.1| POLH protein [Homo sapiens]
gi|119624614|gb|EAX04209.1| polymerase (DNA directed), eta, isoform CRA_a [Homo sapiens]
Length = 414
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|426353300|ref|XP_004044135.1| PREDICTED: DNA polymerase eta [Gorilla gorilla gorilla]
Length = 415
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|449496783|ref|XP_004174688.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase eta [Taeniopygia
guttata]
Length = 699
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 261/470 (55%), Gaps = 43/470 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R ++ VD+D FY+QVEQR ++R P VVQY +W+ GG+IAV +EAR +GV R M
Sbjct: 7 REVSMVDMDXFYMQVEQRLDQQMRVPPCIVVQYTDWQDGGIIAVSFEARAFGVSRGMWAS 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASIDE YLDLT +A
Sbjct: 67 EARALCPELALARVPQARGKADLTPYREASAEVMRVLSRFAAIERASIDEAYLDLTGSAR 126
Query: 132 AMLAETP----PESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCRCDADH 180
L E P +L + + GL + G D + EWL D+
Sbjct: 127 LRLRELRGRPLPATLLP------STFVQGLPGEPGPDPAGKEELRQRGLDEWLASLSFDN 180
Query: 181 RD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D L G +IV E+R+ V + T F CSAGI+HNK LAKLA G+NKP +QT V
Sbjct: 181 PDCPDLQLTMGAVIVEEIRVAVEEATGFRCSAGISHNKTLAKLACGLNKPNRQTLVSARF 240
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V L LP+ ++ LGGKLGT++ + LGV +G+L +FSE +LQ +G TG+WL+++
Sbjct: 241 VPQLFSQLPVSSIRNLGGKLGTAITDILGVEYIGELTQFSETELQTHFGDKTGSWLYDLC 300
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI E V+ R LP+S G K+FPG AL T +VQHWL QL EL RL D QN R+
Sbjct: 301 RGIEEEPVKNRYLPQSIGCSKNFPGKLALATQKAVQHWLLQLALELESRLNKDRSQNHRV 360
Query: 358 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKT 416
A L + D+R S+ C L RY K+ D F L Q
Sbjct: 361 ARQLMV----VIRQQGDTRV---SRLCALSRYDAQKMCNDAFTLIQT----------CNV 403
Query: 417 QGSHYSGWRITALSV--SASKIVPVLSGTCSIMKYFNG---PDKFGSTSE 461
G+H + W +SV SASK ++ + I + G PD +TS+
Sbjct: 404 AGAHQAAWSPPLISVQLSASKFSEPITLSTGIATFLTGDAQPDGTATTSQ 453
>gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis]
Length = 753
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/446 (40%), Positives = 259/446 (58%), Gaps = 27/446 (6%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
G RI+ +D+DCF+ QVE R +P+ G P AVVQYN+WK GG+IAV YEAR++GV R MR
Sbjct: 5 GNRIVVLIDMDCFFCQVETRLKPEHAGKPLAVVQYNQWKLGGIIAVNYEARDFGVTRHMR 64
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
G+EAKE CP I L VP RGKAD S YR+AG EV+ +L + ERAS+DE YLD+T
Sbjct: 65 GEEAKEKCPDIVLAIVPSQRGKADTSRYRSAGREVIDVLKKYCNIVERASVDEAYLDITQ 124
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---EWLCRCDADHRDKLL 185
+ L++ +S D + ++ S+I+G D N+ + K +WL D + + L
Sbjct: 125 IVDDKLSKEIIDS-DSISKQLENSYIVGFSESDINNEEQRSKGLQDWLSELADDIQIQRL 183
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
A V +R +V T F CSAGI+ NK+LAKLA G++KP +QT +P S+V L SL
Sbjct: 184 AIAGAFVEHIRKEVYDTTGFRCSAGISFNKILAKLACGLHKPNRQTILPASAVPELYGSL 243
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P+KK++ LGGKLG + + L + DLL +S LQ + TG WL+NIARGI E V
Sbjct: 244 PVKKVRNLGGKLGDMVIDSLKCNVMADLLPYSLQYLQNRFDEKTGMWLYNIARGIDSEPV 303
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
RL+ KS G+ K FPG +A+ + ++HW+ +L E+ ERL DLE+N+R A L +
Sbjct: 304 TPRLVSKSIGACKRFPGKQAIVELDVLKHWIGELSAEVCERLEQDLEENERKASQLIV-- 361
Query: 366 SAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 424
+F+ D + S++ L Y K+ E + N+ ++ L SF
Sbjct: 362 -SFQYC-QDKKLVSQSRTVALTSYKQEKVAEQSLNIVVKATQQLLISF------------ 407
Query: 425 RITALSVSASKIVPVLSGTCSIMKYF 450
L +SA K + G+ + M +F
Sbjct: 408 ----LGLSAGKFIKA-KGSENFMNFF 428
>gi|299856826|pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
gi|299856829|pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
gi|299856832|pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
gi|342351155|pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
gi|386783389|pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
gi|386783392|pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
gi|386783395|pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
gi|386783398|pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
gi|386783401|pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
gi|386783404|pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
gi|394986303|pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
gi|394986306|pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
gi|394986309|pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
gi|394986312|pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
gi|394986315|pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
gi|394986318|pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
gi|394986321|pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
gi|394986324|pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
gi|394986327|pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986330|pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
gi|394986333|pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
gi|394986336|pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986339|pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986342|pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986345|pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
gi|394986348|pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
gi|394986351|pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 10 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 70 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 129
Query: 132 AML--AETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 130 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 189
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 190 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 249
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 250 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 309
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 310 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 369
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 370 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 407
>gi|351707957|gb|EHB10876.1| DNA polymerase eta [Heterocephalus glaber]
Length = 711
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 185/461 (40%), Positives = 263/461 (57%), Gaps = 41/461 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ +++ ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSHFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDG-----NDSKATVK----------EWLCRC 176
E L ++ + + + +L +G +K TV+ +WL
Sbjct: 127 --------ERLQKLQGQPISADLLPTTYVEGLPQSPTPAKETVQKEEMRKQGLHQWLDSL 178
Query: 177 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNTISPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SQGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGVEYMGELTQFTESQLQNHFGEKNGSWL 298
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDQSD 358
Query: 354 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 412
N R+A L + D R + C L RY K+ +D F + + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAYKMSQDAFAVIRN-----CNTS 409
Query: 413 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCS-IMKYFNG 452
G++T+ S +T L + A+K G+C+ I + +G
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSVSGPGSCTDITAFLSG 446
>gi|194223548|ref|XP_001497587.2| PREDICTED: DNA polymerase eta [Equus caballus]
Length = 713
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 184/450 (40%), Positives = 257/450 (57%), Gaps = 24/450 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV RSM D
Sbjct: 7 RVIVLVDMDCFFVQVEQRQNPHLRNKPCAVVQYTAWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EAK++CP + LV+VP +RGKADL+ YR A EV+ +++R ERASIDE ++DLT A
Sbjct: 67 EAKKLCPDLLLVEVPESRGKADLTKYREASVEVMEVMSRFAMIERASIDEAFVDLTSAVR 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G D K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGSTTAEGTDEKEEMRKQGLFQWLDSLQTDNTTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T CSAGI+HNK+LAKLA G+NKP QT + SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACGLNKPNHQTLISHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPISKIRNLGGKLGASVIGILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R + KS G K+FP AL T VQ WL QL +EL ERL D +N R+A L
Sbjct: 307 HDPVKPRQILKSIGCCKNFPAKVALTTQEQVQWWLLQLAQELEERLIKDRNENDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L Y K+ D F A +R + S G++ + S
Sbjct: 367 AVSLRV----QGDRRLSSLRRCCALTCYDAHKMSHDAF----AVIRNYNVS-GIQNEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L +SA+K +C+ + F
Sbjct: 418 ----PLTMLFLSATKFSASTPSSCTDITNF 443
>gi|348576228|ref|XP_003473889.1| PREDICTED: DNA polymerase eta-like [Cavia porcellus]
Length = 712
Score = 318 bits (816), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 183/463 (39%), Positives = 259/463 (55%), Gaps = 41/463 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ +++ ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSHFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDG----------------NDSKATVKEWLCR 175
E L ++ + + + +L +G K + EWL
Sbjct: 127 --------ERLQKLQGQPISADLLPTTYVEGLPQGPRPAAEETGQKEEMRKRGLYEWLDS 178
Query: 176 CDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
D+ D L G LIV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT
Sbjct: 179 LQIDNLASPDLQLTVGALIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTL 238
Query: 233 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 292
V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+W
Sbjct: 239 VSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGELTQFTESQLQNHFGEKNGSW 298
Query: 293 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 352
L+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D +
Sbjct: 299 LYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDQK 358
Query: 353 QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGS 411
N R+A L + D R + C L RY K+ +D F + + +
Sbjct: 359 DNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSQDAFAVIRN-----CNT 409
Query: 412 FGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
G++T+ S +T L + A+K +C+ + F D
Sbjct: 410 SGIQTEWSP----PLTMLFLCATKFSVSAPASCTDITAFLSSD 448
>gi|126310086|ref|XP_001366117.1| PREDICTED: DNA polymerase eta [Monodelphis domestica]
Length = 704
Score = 318 bits (815), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 184/452 (40%), Positives = 259/452 (57%), Gaps = 28/452 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+I+ YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIISASYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + +VQV RGKA+L+ YR+A EV+ +++R ER+SIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLIVQVRETRGKANLAKYRDASVEVMEVMSRFAVIERSSIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE-----WLCRCDAD---HR 181
L + P + + + ++ G + +G K +++ WL D
Sbjct: 127 ERLQKLQAQPVTANLLASTYIQGFPHGTRALEGPIQKEEIRQQGVIQWLESLPVDDPSSS 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R+ + K T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLRLTVGAVIVEEMRVAIEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
LPI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSHLPIGKIRNLGGKLGASVIGTLGVEYMGELTQFTELQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T V+ WL QL +EL ERL D + N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGITALTTQEQVKWWLLQLAQELEERLTKDQKDNDRVALQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L Y A K+ D F L + + G+KT+
Sbjct: 367 AVSIRI----QGDKRLSSLRRCCALAYYDAHKMSSDAFALIRN-----CNTAGIKTE--- 414
Query: 421 YSGWR--ITALSVSASKIVPVLSGTCSIMKYF 450
W +T L + A+K P +C+ + F
Sbjct: 415 ---WAPPLTMLFLCATKFSPSDPTSCTDITSF 443
>gi|198430107|ref|XP_002128588.1| PREDICTED: similar to polymerase (DNA directed), eta [Ciona
intestinalis]
Length = 785
Score = 318 bits (814), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 165/384 (42%), Positives = 239/384 (62%), Gaps = 20/384 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCFYVQVEQR+ L+G P AVVQYN+WKGGG+IAV YEAR+ GV R+MRGD
Sbjct: 15 RVVVLVDMDCFYVQVEQRRDSSLKGKPCAVVQYNQWKGGGIIAVSYEARDEGVTRNMRGD 74
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+AK CP+I L +VP+A GKADL+ YR+AG+EV+ +L + G ERAS+DE Y+DLT
Sbjct: 75 DAKAKCPEIILCKVPMANGKADLTRYRDAGAEVIQVLLQFGGVVERASVDEAYIDLTSVV 134
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE-----WLCRCDADHRDKLL 185
+A + E L ++ E+ ++++G KD D +E + ++D + L
Sbjct: 135 DASMKEK--RILPDL-EQMGNTYVVGYP-KDSCDDTTNARESGLSAYRDSANSDPDAERL 190
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
IV ++R+ + ++T F CSAGI+HNKML+KL+ G+NKP +QT +PF+ V GL ++
Sbjct: 191 LVAAAIVEKMRLAIYQQTSFRCSAGISHNKMLSKLSCGINKPNKQTILPFNMVAGLFQTI 250
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I K++ LGGKLG + GV +G L ++ L + +G TG WL+ + GI E V
Sbjct: 251 KIGKIRNLGGKLGKEIMFRFGVEKIGHLTNQTKQHLVDGFGEKTGLWLYEVCHGIDHEPV 310
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ R + +S G K+F G AL + V+HW+ L EL ERL D + N R++H LT+H
Sbjct: 311 KERHVAQSVGCSKNFTGNDALGSRNKVKHWVRCLTTELVERLNKDKQMNNRVSHALTIHI 370
Query: 366 SAFKSSDSDSRKKFPSKSCPL-RY 388
KK S++CP+ RY
Sbjct: 371 GI---------KKPISRTCPISRY 385
>gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta]
Length = 818
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 234/378 (61%), Gaps = 14/378 (3%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
G RI+ +D+DCF+ QVE + QP+ +G P AVVQYN WK GG+IAV YEAR++GV R MR
Sbjct: 5 GNRIVVLIDMDCFFCQVETKLQPQYQGKPLAVVQYNPWKMGGIIAVNYEARSFGVTRHMR 64
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVYLDL 126
G EAKE CP I L VP RGKAD S YR AG EV+ ++ K C ERAS+DE YLD+
Sbjct: 65 GKEAKEKCPDIVLASVPCLRGKADTSRYRKAGREVIQVI--KKHCNVIERASVDEAYLDI 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT---VKEWLCRCDADHRD- 182
TD + LA T S EV ++++G ND + ++ W+ + D
Sbjct: 123 TDIVDKRLA-TSKVSPKEVILSLANTYVVGYSEVGKNDEEERYQGLQTWILDSFNELHDI 181
Query: 183 --KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+ LA ++V E+R + +ET F CSAGIA NK+LAKLA G++KP +QT +P +V
Sbjct: 182 QTQRLAVAGIMVEEMRESIYRETGFRCSAGIAQNKILAKLACGLHKPNRQTILPEVAVSS 241
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L +LPIKK++ LGGK G ++ LG +GDL+++S ++LQ+ + TG WL+NIARGI
Sbjct: 242 LYSTLPIKKVRNLGGKFGDNVIESLGCNVMGDLMQYSLEQLQKHFDEKTGFWLYNIARGI 301
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
E V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL D +N+R A
Sbjct: 302 DDEPVTNRLLAKSIGACKQFPGKQAITSLEMLKHWAGDLAAEVCERLEEDFVENQRRATL 361
Query: 361 LTL--HASAFKSSDSDSR 376
L + H KS+ S +R
Sbjct: 362 LVISYHYYQNKSTISQTR 379
>gi|410959244|ref|XP_003986222.1| PREDICTED: DNA polymerase eta [Felis catus]
Length = 712
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 236/402 (58%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P L+ P AVVQY WKGGG+I+V YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIISVSYEARAFGVARSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ +++R ER SIDE Y+DLT A
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSRFAGIERGSIDEAYVDLTSAVH 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G D K ++ +WL +
Sbjct: 127 ERLQKLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEEMRKQGLFQWLDSLQTGNTTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIYKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R +PK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVRPRKIPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L Y K+ D F + +
Sbjct: 367 AVSIRV----QGDRRLSSLRRCCALTHYDAHKMSRDAFAVIR 404
>gi|414880430|tpg|DAA57561.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 220
Score = 314 bits (805), Expect = 9e-83, Method: Composition-based stats.
Identities = 150/216 (69%), Positives = 182/216 (84%), Gaps = 1/216 (0%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP+ R+IAHVD+DCFYVQVEQR+ P LRG PTAVVQYN WKGGGLIAV YEAR
Sbjct: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPALRGQPTAVVQYNGWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASID
Sbjct: 61 GFGVKRSMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAA M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD+
Sbjct: 121 EVYLDLTDAANEMVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADY 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 216
+DKLLACG +IV +LR++VL+ET+FTCSAGIAHNK+
Sbjct: 180 QDKLLACGAIIVAQLRVRVLEETQFTCSAGIAHNKV 215
>gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea]
Length = 700
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 15/376 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCF+ QVE + QP+ G P AVVQYN+W+ GG+IAV YEAR YGV R MRG+
Sbjct: 8 RIVVLIDMDCFFCQVETKLQPQYIGKPLAVVQYNQWQLGGIIAVNYEAREYGVTRHMRGE 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVYLDLTD 128
EAKE CP + LV VP RGKAD+S YRNAG EV++I+ K C ERAS+DE YLD+TD
Sbjct: 68 EAKEKCPDLILVSVPCLRGKADISRYRNAGREVINII--KEHCNVIERASVDEAYLDITD 125
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT---VKEWLCRCDADHRD--- 182
++ + ++ + + ++G ND + +K W+ + D
Sbjct: 126 MVHKRMSTNL--NFSDLATQLSNTFVVGYSEIGKNDEEERSKGIKTWIKNVFEEFEDIEA 183
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+ LA LIV ++R + + F CSAGIA NK+LAKLA G++KP +QT +P ++V L
Sbjct: 184 QKLAIAGLIVEKIRTDISDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLTLY 243
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+LPIKK++ LGGK G + L +GDLL++S LQ+ + TG WL+NIARGI
Sbjct: 244 STLPIKKVRNLGGKFGDIVTESLNCNVMGDLLQYSLQYLQKRFDEKTGLWLYNIARGIDN 303
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
E V RL+ KS G+ K FPG +A+ ++ ++HW+++L E+ ERL DL +N+R A +T
Sbjct: 304 EPVTVRLVSKSIGACKKFPGKQAITSLNMLKHWISELSAEICERLEQDLTENERRATLVT 363
Query: 363 L--HASAFKSSDSDSR 376
+ H K+ S SR
Sbjct: 364 ICYHYYQNKTIVSQSR 379
>gi|77735847|ref|NP_001029622.1| DNA polymerase eta [Bos taurus]
gi|73587313|gb|AAI03397.1| Polymerase (DNA directed), eta [Bos taurus]
gi|296474420|tpg|DAA16535.1| TPA: DNA-directed DNA polymerase eta [Bos taurus]
Length = 711
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 234/398 (58%), Gaps = 15/398 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE YLDLT A +
Sbjct: 67 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAYLDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G K + +WL +
Sbjct: 127 ERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R+ + K+T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTMGAVIVEEMRVAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI
Sbjct: 247 FNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRPITKTLGCGKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 398
+ D R + C L Y K+ D F
Sbjct: 367 VVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 400
>gi|91094387|ref|XP_971192.1| PREDICTED: similar to DNA polymerase eta [Tribolium castaneum]
gi|270014910|gb|EFA11358.1| hypothetical protein TcasGA2_TC011515 [Tribolium castaneum]
Length = 679
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 177/416 (42%), Positives = 241/416 (57%), Gaps = 17/416 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCFY QVE++ P L G P AVVQYN W+GGG+IAV Y AR+ GV R MRG
Sbjct: 6 RVVVLVDMDCFYCQVEEKLNPALEGKPIAVVQYNAWQGGGIIAVNYPARDEGVTRHMRGF 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
EAK+ CP I LVQVP RGKADL+ YR+AG V +L +RAS+DE YLD+T+
Sbjct: 66 EAKKKCPSINLVQVPELRGKADLTKYRDAGKRVADVLLTFTPLLQRASVDEAYLDITEIV 125
Query: 131 EAMLAETPPESLDEVDEEAL-KSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E + + LD++ L + ++G E +D + T KE+ + LA G
Sbjct: 126 EKRIEK----GLDDLTLINLSNTFVVGCELEDFLHNAITNKEYSIP------NLKLAVGG 175
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
L+ E+R +V K T + CSAGIAHNK+LAKL ++KP +QT +P V+ ++ PI K
Sbjct: 176 LVTEEIRREVFKVTGYKCSAGIAHNKILAKLVCSLHKPNKQTILPQEEVEKFFETTPINK 235
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+K LGGK G +L + VTT+G L K E L + Y TG WL NIARGI E V +L
Sbjct: 236 VKNLGGKFGQTLSEDFHVTTMGQLAKIPEKLLVQKYDEKTGNWLHNIARGIDMEPVTTKL 295
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-HASAF 368
+ KS K+FPG AL T +VQHWL +L E+SERL DL++N R A + + A
Sbjct: 296 IAKSIACCKNFPGKTALVTEENVQHWLGKLAAEMSERLDKDLKENNRRAKQIIVSFAQEV 355
Query: 369 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 424
D S + P S Y KI + F + + R+ G++ +K G + S +
Sbjct: 356 NKKDVHSTRTHPLVS----YNEQKIAQAAFEVVKRFCRKSDGTYHLKFLGLNASSF 407
>gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator]
Length = 827
Score = 311 bits (797), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 163/374 (43%), Positives = 231/374 (61%), Gaps = 12/374 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCF+ QVE + QP+ G P AVVQYN+W+ GG+IAV YEARN+GV R MRG
Sbjct: 6 RIVVLIDMDCFFCQVETKLQPQYAGKPLAVVQYNQWEMGGIIAVNYEARNFGVTRHMRGK 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAKE CP I L VP RGKAD + YR AG EV+ ++ + ERAS+DE YLD+TD
Sbjct: 66 EAKEKCPDIVLASVPCLRGKADTTRYRKAGHEVIKVIRKHCNVIERASVDEAYLDITDIV 125
Query: 131 EAMLAETPPESLDEVDEEALKSHILG---LESKDGNDSKATVKEWLCRCDADHRD---KL 184
E L + S +E+ + ++G + D + ++ W+ + D +
Sbjct: 126 EKRLDKI---SSNELISSLANTFVVGYSEIGKSDEEERHKGLQTWILDSFKELHDIQAQK 182
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
LA +IV E+R + ET F CSAGI+ NK+LAKLA G++KP +QT +P ++V L +
Sbjct: 183 LAVAGMIVEEIRASIYNETGFRCSAGISQNKILAKLACGLHKPNRQTILPEAAVASLYST 242
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
L +KK++ LGGK G + LG +GDL+++S ++LQ+ + TG WL+NIARGI E
Sbjct: 243 LSVKKVRNLGGKFGDVVVESLGCNVMGDLMQYSLEQLQKHFDEKTGLWLYNIARGIDNEP 302
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL- 363
V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL DL +N+R A LT+
Sbjct: 303 VTNRLLSKSVGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEQDLIENQRRATLLTIS 362
Query: 364 -HASAFKSSDSDSR 376
H +S+ S SR
Sbjct: 363 YHYYQNRSTVSQSR 376
>gi|335292187|ref|XP_003356678.1| PREDICTED: DNA polymerase eta [Sus scrofa]
Length = 698
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/443 (39%), Positives = 258/443 (58%), Gaps = 24/443 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A +D+DCF+VQVEQR+ P L+ P AVVQY WKGGG+++V YEAR +GV +SM D
Sbjct: 7 RVVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTKSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE ++DLT A
Sbjct: 67 DAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAFVDLTSAVR 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ GL + +G K ++ +WL +D+
Sbjct: 127 ERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRKQGLLQWLDSLQSDNTSSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
+ L G +IV E+R + ++T CSAGI+HNK+LAKLA ++KP +QT V SV +
Sbjct: 187 ELQLTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLGSVPQV 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPISKVRHLGGKLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
E V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HEPVRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L Y K+ +D F A +R + S G++T+ S
Sbjct: 367 AVSIRVL----GDKRLSSLRRCCALTHYDAHKMSQDAF----AAIRNYNTS-GIQTEWSP 417
Query: 421 YSGWRITALSVSASKIVPVLSGT 443
+T L + A+K +GT
Sbjct: 418 ----PLTMLFLCATKFSASSAGT 436
>gi|10440504|dbj|BAB15799.1| dpol-eta [Drosophila melanogaster]
gi|12083719|dbj|BAB20905.1| DNA polymerase eta [Drosophila melanogaster]
gi|16198323|gb|AAL14000.1| SD05329p [Drosophila melanogaster]
Length = 885
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 250/459 (54%), Gaps = 32/459 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + + +E + + +G S +K T + + D +
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 196 PAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 255
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ L DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ + GTWL+N
Sbjct: 256 TETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFN 315
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 354
I+RGI E V R KS G K FPG + + ++QHWL +L E+++RL D +E N
Sbjct: 316 ISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENN 375
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GS 411
+R H + + D D + S+S LR Y I + +L +A + FL GS
Sbjct: 376 RRAKHMVVQYV-----QDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGS 430
Query: 412 FGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
I L +S K V SG + + F
Sbjct: 431 ESALNNA-------IKFLGISVGKFETVSSGQNKLQEMF 462
>gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata]
Length = 774
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 166/381 (43%), Positives = 236/381 (61%), Gaps = 14/381 (3%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
++S +I+ +D+DCF+ QVE +++P+ G P AVVQYN+WK GG+IAV YEAR YGV R
Sbjct: 3 NASNNKIVVLIDMDCFFCQVETKRRPEYTGKPLAVVQYNQWKLGGIIAVNYEAREYGVTR 62
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVY 123
MRG+EAK+ C + L VP RGKAD S YR+AG +V++++ K C ERAS+DE Y
Sbjct: 63 HMRGEEAKQKCADLILASVPCTRGKADTSRYRSAGRDVLNVI--KKHCNIIERASVDEAY 120
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS---KATVKEWLCRCDADH 180
LD+TD ++ T S + + + + I+G ND + V WL +
Sbjct: 121 LDITDIVAKRMS-TSFLSQEYLVTQLSNTFIVGYSEIGKNDEEQRRKGVNAWLTNIFEEL 179
Query: 181 RD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D + LA +IV ELR + ET F CSAGI++NK+LAKLA G++KP +QT +P ++
Sbjct: 180 EDVQAQELALAGVIVEELRQDIYNETGFKCSAGISNNKILAKLACGLHKPNRQTILPPNA 239
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V L +LPIKK++ LGGK G + L +GDLL++S LQ+ + TG WL+NIA
Sbjct: 240 VSELYSTLPIKKVRNLGGKFGDVVIESLNCNVMGDLLQYSLQYLQKRFDDKTGLWLYNIA 299
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI E V RL+ KS G+ K FPG +A+ +V ++HW + E+ ERL DL++N+R
Sbjct: 300 RGIDNEPVTTRLISKSIGACKKFPGKQAITSVDVLRHWAGDMAAEVCERLEQDLQENERR 359
Query: 358 AHTLTL--HASAFKSSDSDSR 376
A LT+ H KS+ + SR
Sbjct: 360 ATLLTVCYHYYQNKSTVTQSR 380
>gi|24668444|ref|NP_649371.2| DNApol-eta [Drosophila melanogaster]
gi|7296509|gb|AAF51794.1| DNApol-eta [Drosophila melanogaster]
Length = 885
Score = 308 bits (789), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 250/459 (54%), Gaps = 32/459 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + + +E + + +G S +K T + + D +
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 196 PAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 255
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ L DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ + GTWL+N
Sbjct: 256 TETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFN 315
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 354
I+RGI E V R KS G K FPG + + ++QHWL +L E+++RL D +E N
Sbjct: 316 ISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENN 375
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GS 411
+R H + + D D + S+S LR Y I + +L +A + FL GS
Sbjct: 376 RRAKHMVVQYV-----QDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGS 430
Query: 412 FGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
I L +S K V SG + + F
Sbjct: 431 ESALNNA-------IKFLGISVGKFETVSSGQNKLQEMF 462
>gi|440902446|gb|ELR53238.1| DNA polymerase eta [Bos grunniens mutus]
Length = 710
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/398 (42%), Positives = 232/398 (58%), Gaps = 15/398 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE YLDLT A +
Sbjct: 67 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAYLDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + +G K + +WL +
Sbjct: 127 ERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI
Sbjct: 247 FNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRPITKTLGCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 398
+ D R + C L Y K+ D F
Sbjct: 367 VVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 400
>gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera]
Length = 689
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 232/377 (61%), Gaps = 17/377 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCF+ QVE + QP+ G P AVVQYN+W+ GG+IAV YEAR YGV R MRG
Sbjct: 8 RIVVLIDMDCFFCQVETKLQPQYAGKPLAVVQYNQWQLGGIIAVNYEAREYGVTRHMRGK 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVYLDLTD 128
EAKE CP + LV VP RGKAD+S YR+AG EV++++ K C ERAS+DE YLD+TD
Sbjct: 68 EAKEKCPDLILVSVPCLRGKADISRYRSAGCEVINVI--KEHCNIIERASVDEAYLDITD 125
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRCDADHRD-- 182
++ + + + + ++G ND SK T K W+ + D
Sbjct: 126 MVHKRMSTNL--NFSNLATQLSNTFVVGYSEIGKNDEEERSKGT-KIWIKNIFEEFEDIE 182
Query: 183 -KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
+ A LIV ++R + + F CSAGIA NK+LAKLA G++KP +QT +P ++V L
Sbjct: 183 AQKFAIAGLIVEKIRADIFDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLTL 242
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+LPIKK++ LGGK G + L +GDLL++ LQ+ + TG WL+NIARGI
Sbjct: 243 YSTLPIKKVRNLGGKFGHIVTESLNCNVMGDLLQYPLQYLQKRFDEKTGLWLYNIARGID 302
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
E V RL+ KS G+ K FPG +A+ ++ ++HW+++L E+ ERL DL +N+R A +
Sbjct: 303 NEPVNVRLVSKSIGACKKFPGKQAIISLNMLKHWISELSAEICERLERDLMENERRATLV 362
Query: 362 TL--HASAFKSSDSDSR 376
T+ H K++ S SR
Sbjct: 363 TICYHYYQNKTTVSQSR 379
>gi|195592306|ref|XP_002085876.1| GD12080 [Drosophila simulans]
gi|194197885|gb|EDX11461.1| GD12080 [Drosophila simulans]
Length = 889
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 239/416 (57%), Gaps = 23/416 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + + +E + + +G + +K T + + D +
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 196 PAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 255
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ L DSLP+ K+K LGGK G + + LG+ +G ++KFSE +LQ + GTWL+N
Sbjct: 256 AETASLFDSLPVGKIKGLGGKFGEVVCDTLGIKFMGQVVKFSEVELQRKFDEKNGTWLFN 315
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 354
I+RGI E V R KS G K FPG + + ++QHWL +L E+++RL D +E N
Sbjct: 316 ISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENN 375
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 409
+R H + + D D + S+S L+ Y I + +L +A + FL
Sbjct: 376 RRAKHMVVQYV-----QDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANTKTFL 426
>gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST]
gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST]
Length = 929
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/452 (39%), Positives = 251/452 (55%), Gaps = 27/452 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCFY QVE++ P +RG P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 15 RVVVLVDMDCFYCQVEEKLNPAIRGKPIAVVQYNPWQGGGIIAVNYPARAEGVTRHMRGD 74
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
EAK+ CP+IEL QVP RGKADL+ YR AG EV +L + ERASIDE YLD+T+
Sbjct: 75 EAKQHCPEIELPQVPQVRGKADLTRYREAGKEVADVLKSFTPLLERASIDEAYLDITERV 134
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLES-------------KDGNDSKATVKEWLCRCD 177
+ E E+ + +G E+ G +++ +E R +
Sbjct: 135 LTRIHEMNEGKFQLRPEKLANTFAVGYENIGEFITKLSNTFDPAGGTAESNSQE---RLE 191
Query: 178 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D L G IV E+R V + T F CSAGIAHNK+LAKL +G +KP +QT +P +S
Sbjct: 192 YKKSDIKLLVGASIVNEIRAAVKERTGFECSAGIAHNKILAKLTAGFHKPNKQTILPINS 251
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
+ L ++LP+KK+K LGGKLG + L + + +L++F E LQ+ + G+W++ +A
Sbjct: 252 IPKLYETLPLKKVKGLGGKLGDQVCEVLKIKFMSELVQFPESVLQQHFEQRMGSWMYLMA 311
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI E V A+ KS G K FPG A+ +A++ HWLN+L E++ERL DL++N R
Sbjct: 312 RGIDLEAVTAKFHSKSIGCCKRFPGKNAITGLATLHHWLNELASEVTERLEKDLDENNRT 371
Query: 358 AHTLTL-HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 416
A LT+ ++ + D S + + Y +I D + + F S T
Sbjct: 372 AKQLTVSYSQQIDNVDVSSTRSI----ALVAYDAERIAADALDAIKRNTERFFASNS--T 425
Query: 417 QGSHYSGWRITALSVSASKIVPVLSGTCSIMK 448
H I L +SA K P +G + +K
Sbjct: 426 TALHNP---IKFLGISAGKFEPNGAGKGAGIK 454
>gi|291396262|ref|XP_002714741.1| PREDICTED: DNA-directed DNA polymerase eta [Oryctolagus cuniculus]
Length = 687
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 234/402 (58%), Gaps = 23/402 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVVLVDMDCFFVQVEQRENPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV + GKA+L+ YR A EV+ +++R ERASIDE +LDLTDA E
Sbjct: 67 DAKKLCPDLLLAQVRESHGKANLTKYREASVEVMEVMSRFAGIERASIDEAFLDLTDAVE 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRCDAD- 179
L + P S D + ++I GL + KE WL + +
Sbjct: 127 ERLQKLQGQPISADLLPS----TYIEGLPQGSTTAEETVQKEEMRKQGLLQWLGSLEIEG 182
Query: 180 --HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D L G +IV E+R + ++T CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 183 TASPDVRLTMGAVIVEEMRAAIERKTGLQCSAGISHNKVLAKLACGLNKPNRQTLVSHKF 242
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V L +PI+K++ LGGKLG+S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 243 VPQLFSQVPIRKVRNLGGKLGSSVIAILGIEYMGELTQFTESQLQWHFGEKNGSWLYAMC 302
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI + V+ R +PKS G K+FPG AL T VQ WL QL EL ERL D N R+
Sbjct: 303 RGIEHDPVRPRQIPKSVGCSKNFPGQTALATPEQVQWWLLQLARELEERLTKDQTDNDRM 362
Query: 358 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 398
A L + D R + C + RY K+ +D F
Sbjct: 363 ATQLAVSIRV----QGDKRLSSLRRCCAITRYDAHKMSQDAF 400
>gi|327262355|ref|XP_003215990.1| PREDICTED: DNA polymerase eta-like [Anolis carolinensis]
Length = 689
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 193/493 (39%), Positives = 272/493 (55%), Gaps = 32/493 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D+DCFY+QVEQR +P LRG P V QY WKGGG+IAV YEAR +GV R+M
Sbjct: 7 RVVALADMDCFYIQVEQRLEPSLRGKPCVVAQYKTWKGGGIIAVSYEARAFGVTRNMWAA 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP ++L +VP A GKADL+ YR A EV+ +++R ERASIDE Y+DLT A
Sbjct: 67 DAKKLCPDLQLARVPEAHGKADLTRYREASVEVMEVMSRFAVIERASIDEAYMDLTSAVH 126
Query: 132 AMLAETPPESLDEVDEEALKSHILG------LESKDGNDSK---ATVKEWLCRC---DAD 179
L + + + V E+ ++I G LE N + +++WL D
Sbjct: 127 ERLQKMRGQPI--VAEQLATTYIQGFPDSFALEGTTDNKEEWRLHGLRQWLESLPFEDLS 184
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
+ + L G +I+ E+R V T F CS GI+HNK+LAKLA G+NKP +QT V SV
Sbjct: 185 NPELQLTVGAVIMEEMRAAVESATGFRCSVGISHNKVLAKLACGLNKPNRQTLVSQGSVP 244
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
L +PI ++ LGGKLG S+ LGV VG L++FSE +LQ +G TG+WL+++ RG
Sbjct: 245 QLFSKMPIGNIRNLGGKLGASVTELLGVEYVGQLIQFSELQLQMHFGDKTGSWLYDLCRG 304
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I E V+ R LPKS G K+F G AL T VQHWL QL EL ERL D +QN R A
Sbjct: 305 IEHEPVKPRQLPKSIGCSKNFRGREALVTQKQVQHWLLQLALELEERLNKDRDQNNRTAK 364
Query: 360 TLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 418
L++ S + S+ C L +Y KI +D F + Q G
Sbjct: 365 QLSIGIRMQGSKNPSGL----SRCCALSQYDAHKISQDAFAVIQ----------NCNAAG 410
Query: 419 SHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPS 476
+ W +T L +SA+K V ++ + I + + ++ + D+ +A L
Sbjct: 411 GLQAAWSPPVTLLQLSATKFVEEMTSSGDITAFLSNDSQYSQPTSISADS-PNARSLGSP 469
Query: 477 GSESYSTLNSTEL 489
E+ T N+ ++
Sbjct: 470 KKETNKTTNTIQM 482
>gi|195348695|ref|XP_002040883.1| GM22104 [Drosophila sechellia]
gi|194122393|gb|EDW44436.1| GM22104 [Drosophila sechellia]
Length = 889
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 238/416 (57%), Gaps = 23/416 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + + +E + + +G + +K T + + D +
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 196 PAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 255
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ L DSLP+ K+K LGGK G + LG+ +G ++KFSE +LQ + GTWL+N
Sbjct: 256 AETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVELQRKFDEKNGTWLFN 315
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQN 354
I+RGI E V R KS G K FPG + + ++QHWL +L E+++RL D +E N
Sbjct: 316 ISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENN 375
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 409
+R H + + D D + S+S L+ Y I + +L +A + FL
Sbjct: 376 RRAKHMVVQYV-----QDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANTKTFL 426
>gi|357624213|gb|EHJ75075.1| DNA polymerase eta [Danaus plexippus]
Length = 785
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 168/377 (44%), Positives = 223/377 (59%), Gaps = 21/377 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCFY QVE++ P+L+G P AVVQYN W+GGG+IAV Y AR GV R MRG+
Sbjct: 6 RIVVLIDMDCFYCQVEEKLNPQLKGKPIAVVQYNPWRGGGIIAVNYVARAMGVTRHMRGN 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EAK+ CP+I+L VP RGKAD++ YR AG +V +L R ERASIDE YLD+TD
Sbjct: 66 EAKQKCPEIQLPSVPCFRGKADITKYREAGKDVAKVLQRFTPLLERASIDEAYLDITDPV 125
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC-------DADHRDK 183
+ +D + S++L G D+ + + C D +H
Sbjct: 126 RKRILN--------IDVRDINSNMLPNNFALGYDTLDSFISDVHSCGLSSMEFDYEHSKH 177
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
LL G LIV+E+R V ET + CSAGIAHNK+LAKL GMNKP +QT +P SV L
Sbjct: 178 LLV-GALIVSEIRAAVYAETGYQCSAGIAHNKILAKLVCGMNKPNKQTVLPKHSVNILYK 236
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+L +KK+K LGGK G + L ++T+G L +F+E LQ + G+WL+NIARG+ E
Sbjct: 237 TLSLKKVKHLGGKFGDHVAETLNISTMGQLQRFTEKDLQARFDEKNGSWLYNIARGVDLE 296
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH---- 359
VQAR PKS G K G AL+ + S++ WL L +E+ RL D +N RI
Sbjct: 297 PVQARFNPKSIGCCKQLRGKAALQDLVSLRKWLRDLGDEIENRLEQDSLENNRIPKQMVV 356
Query: 360 TLTLHASAFKSSDSDSR 376
+ +L AS K S SR
Sbjct: 357 SFSLQASKGKRDISSSR 373
>gi|195379088|ref|XP_002048313.1| GJ11416 [Drosophila virilis]
gi|194155471|gb|EDW70655.1| GJ11416 [Drosophila virilis]
Length = 871
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 167/415 (40%), Positives = 233/415 (56%), Gaps = 21/415 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++QP+ +G P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 17 RVVLLVDMDCFFCQVEEKQQPEYQGKPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 76
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EAKE+C I L QVP R KAD YR+AG EV ++L R ERAS+DE YLD+T+
Sbjct: 77 EAKELCHDIILCQVPNIREKADTGKYRDAGKEVANVLQRFTNLLERASVDEAYLDITETV 136
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + S +E + H +G ++ +K T + ++ D +
Sbjct: 137 NQRVEQLQAGSFALKPQELVNCHAVGYDNIGDYVNKITNRFANPYVDDERYMLAYDPNDL 196
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G I E+R V ET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 197 PAVRQSDLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 256
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ + L D LP+ K+K LGGK G ++ LGV +G +LK+SE +LQ G+WL N
Sbjct: 257 AEIPALFDQLPVGKIKGLGGKFGETVCETLGVKFLGQVLKYSEKELQRKLDEKNGSWLHN 316
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
IARGI E V R KS G K FPG + + ++QHWL +L E+++RL D +N
Sbjct: 317 IARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEMNDRLEKDFIENN 376
Query: 356 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 409
R A + + D D ++ S+S P+ Y + + L + + FL
Sbjct: 377 RKAKQMVVQY----VQDVDGQEVASSRSTPINHYDQETLAKQALELIRTNTKTFL 427
>gi|194752317|ref|XP_001958469.1| GF23499 [Drosophila ananassae]
gi|190625751|gb|EDV41275.1| GF23499 [Drosophila ananassae]
Length = 876
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 236/416 (56%), Gaps = 23/416 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQNPEHRNKPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EA+++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+TD
Sbjct: 76 EARDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITDTV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCRCDADHRD- 182
+ + + +E + ++ +G +K T +++ + D D
Sbjct: 136 NLRIKQMESGAFALKPQELVNTYAVGYPDIGDYVNKITNRFSNPYIEDERFQLSYDQNDL 195
Query: 183 --------KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+LL G + E+R V KET + CSAGIAHNK+LAKLA+G+NKP +QT +P
Sbjct: 196 PAVRQSDIRLL-IGAAVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGLNKPNKQTILP 254
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+ DSLP+ K+K LGGK G + +G+ +G L KFSE +LQ Y GTWL+
Sbjct: 255 LGEIPAFFDSLPVGKIKGLGGKFGEVVCETMGIKFLGQLCKFSEAELQRKYDEKNGTWLF 314
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
NIARGI E V R KS G K FPG + + S+QHWL +L E++ERL D +N
Sbjct: 315 NIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSSEINERLEKDFIEN 374
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 409
R A + + D D + S+S L+ Y + + L ++ + FL
Sbjct: 375 NRKAKQMVVQY----IQDIDGHEVASSRSTALKDYDKESLAKFALELIRSNTKTFL 426
>gi|195022393|ref|XP_001985566.1| GH17135 [Drosophila grimshawi]
gi|193899048|gb|EDV97914.1| GH17135 [Drosophila grimshawi]
Length = 871
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 220/369 (59%), Gaps = 16/369 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++QP+ RG P AVVQYN W+GGG+IAV Y AR+ GV R MRGD
Sbjct: 17 RVVLLVDMDCFFCQVEEKQQPQHRGKPLAVVQYNAWRGGGIIAVNYAARDKGVTRHMRGD 76
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK +CP I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 77 EAKALCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 136
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + SL EE + S+ +G E+ +K T + ++ DA+
Sbjct: 137 NQRVQQLETGSLALKPEELVNSYAVGYENIGDYVNKITKRFANPYVDDERFMLAYDANDL 196
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G I E+R V ET + CSAGIAHNK+LAKL +GMNKP +QT +P
Sbjct: 197 PAVRQSDLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLVAGMNKPNKQTILPL 256
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ + L D LP+ K+K LGGK G ++ LG+ +G +LK++E +LQ +GTWL
Sbjct: 257 AEIPALFDQLPVGKIKGLGGKFGETVCETLGIKFLGHVLKYTEKELQRKLDEKSGTWLHQ 316
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
IA GI E V R KS G K FPG + + S+QHWL +L E+++RL D +N
Sbjct: 317 IACGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELASEMNDRLEKDFIENN 376
Query: 356 RIAHTLTLH 364
R A + +
Sbjct: 377 RKAKQMVVQ 385
>gi|426250341|ref|XP_004018895.1| PREDICTED: DNA polymerase eta [Ovis aries]
Length = 708
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 168/405 (41%), Positives = 231/405 (57%), Gaps = 30/405 (7%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV GKA+L+ YR A EV+ I++R ER SIDE YLDLT A +
Sbjct: 67 DAKKLCPDLLLAQVRELHGKANLAKYREASMEVMEIMSRFAVMERGSIDEAYLDLTSAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK--------------EWLCRCD 177
E L ++ + + + +L +G +T + +WL
Sbjct: 127 --------ERLQKLQNQRISADLLPTTCIEGFPQGSTTEGTVEKEERRKQGLLQWLDSLQ 178
Query: 178 ADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 TESTSSPDLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SV L + +PI +++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL+
Sbjct: 239 HGSVPQLFNQVPINRVRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
+ RGI + V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D N
Sbjct: 299 AMCRGIEHDPVKPRPITKTIGCSKNFPGKTALSTRFQVQWWLLQLAQELEERLTKDRNAN 358
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 398
R+A L + D R + C L Y K+ D F
Sbjct: 359 DRVATQLVVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 399
>gi|194876038|ref|XP_001973703.1| GG13193 [Drosophila erecta]
gi|190655486|gb|EDV52729.1| GG13193 [Drosophila erecta]
Length = 890
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 236/416 (56%), Gaps = 23/416 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE++++P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQRPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR--------- 181
+ + + +E + + +G + +K T + D D R
Sbjct: 136 NHRMQQMQIGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMD-DERFQMSYDQND 194
Query: 182 -------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 195 LPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILP 254
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+ L DSLP+ K+K LGGK G + LG+ +G ++KF+E +LQ + GTWL+
Sbjct: 255 LADTASLFDSLPVGKIKGLGGKFGEVVCETLGIKYIGQVVKFTEVELQRKFDEKNGTWLF 314
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
NI+RGI E V R KS G K FPG + + ++QHWL +L E+++RL D +N
Sbjct: 315 NISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIEN 374
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 409
R A + + D D + S+S L+ Y I +L +A + FL
Sbjct: 375 NRRAKQMVVQY----VQDIDGEEVASSRSTALKDYDQESIVRFALDLIRANTKTFL 426
>gi|157817057|ref|NP_001101674.1| DNA polymerase eta [Rattus norvegicus]
gi|149069361|gb|EDM18802.1| polymerase (DNA directed), eta (RAD 30 related) (predicted) [Rattus
norvegicus]
Length = 689
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 189/452 (41%), Positives = 260/452 (57%), Gaps = 23/452 (5%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D+
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWADD 67
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEA 132
AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT+A +
Sbjct: 68 AKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAYIDLTNAVQE 127
Query: 133 MLA--ETPPESLDEVDEEALKSHILGLESKDGNDS----KATVKEWLCRCDAD---HRDK 183
L + P S D + ++ G +D + K + +WL + D D
Sbjct: 128 RLEKLQGQPVSADLLPSTYIEGLPRGPAVEDTVEKEDIRKQGLLQWLGSLEKDDPTSPDL 187
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 188 RLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFS 247
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+PI+K++ LGGKLG S+ + LGV +GDL +F+E +LQ +G G+WL+ + RGI E
Sbjct: 248 QMPIRKIRSLGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHE 307
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R+A L +
Sbjct: 308 PVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDNGRVATQLVV 367
Query: 364 HASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
+ D R + C L RY K+ +D F A +R + GV+T+ S
Sbjct: 368 SIRV----EGDKRLSSLRRCCALTRYDAHKMSQDAF----ATIRN-CNTSGVQTEWSP-- 416
Query: 423 GWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K C+ + F D
Sbjct: 417 --PLTMLFLCATKFSASAPPACTDITVFLSSD 446
>gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti]
gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti]
Length = 852
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 246/445 (55%), Gaps = 24/445 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCFY QVE++ P++RG P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 15 RVVVLVDMDCFYCQVEEKLNPEIRGKPIAVVQYNPWQGGGIIAVNYPARAKGVTRHMRGD 74
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EAK+ CP I L QVP RGKAD+S YR AG EV ++L ERAS+DE YLD+T+
Sbjct: 75 EAKQHCPDIVLPQVPQVRGKADISKYREAGKEVAAVLQTFTPLLERASVDEAYLDITERV 134
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESK-----------DGNDSKATVKEWLCRCDAD 179
A L + + ++ + +G +S DG S ++ R
Sbjct: 135 LARLRDMNEGKFQLLPDKLANTFAVGYDSIGEFVQKISGDLDGRVSSQELESEEDRVAYK 194
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
D L G IV E+R V ++T + CSAGIAHNK+LAKL +G +KP +QT +P +
Sbjct: 195 KSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKLTAGFHKPNKQTILPLKCIS 254
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
+ ++L +KK+K LGGKLG + L + T+ +L KF E LQ + G+W++ +A+G
Sbjct: 255 KMYETLSLKKVKGLGGKLGDQVCELLKIQTMSELAKFPEKVLQNHFDDRMGSWMYLMAKG 314
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I E V + KS G K FPG A+ +A+++HWL +L E+ ERL DL++N R A
Sbjct: 315 IDLEAVTPKFNSKSIGCCKRFPGKNAISGIATLKHWLGELANEIQERLEKDLDENNRTAK 374
Query: 360 TLTL-HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQ 417
+T+ +A F +D S ++S PL Y +I D + FL K+
Sbjct: 375 QMTVSYAQQFGQNDVSS-----TRSVPLVGYNAERIAADALEAIKRNTDVFL-----KSD 424
Query: 418 GSHYSGWRITALSVSASKIVPVLSG 442
S I L +SA K +SG
Sbjct: 425 SSGALNKPIKFLGISAGKFDDNVSG 449
>gi|195496653|ref|XP_002095784.1| GE19515 [Drosophila yakuba]
gi|194181885|gb|EDW95496.1| GE19515 [Drosophila yakuba]
Length = 895
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 166/416 (39%), Positives = 235/416 (56%), Gaps = 23/416 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ R P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
EAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTKLLERASVDEAYLDITETV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR--------- 181
+ + + +E + + +G + +K T + D D R
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPNIGDFVNKITNRFANPYMD-DERFQMSYDQND 194
Query: 182 -------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 195 LPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILP 254
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+ DSLP+ K+K LGGK G + LG+ +G ++KF+E +LQ + GTWL+
Sbjct: 255 LAETASFFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFTEVELQRKFDEKNGTWLF 314
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
NI+RGI E V R KS G + FPG + + ++QHWL +L E+++RL D +N
Sbjct: 315 NISRGIDMEAVTPRFYSKSIGCCQKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIEN 374
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 409
R A + + D D + S+S L+ Y I + +L +A + FL
Sbjct: 375 NRRAKQMVVQY----VQDIDGEEVASSRSTALKDYDQESIVRFSLDLIKANTKTFL 426
>gi|195128223|ref|XP_002008564.1| GI11744 [Drosophila mojavensis]
gi|193920173|gb|EDW19040.1| GI11744 [Drosophila mojavensis]
Length = 894
Score = 301 bits (771), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 168/415 (40%), Positives = 236/415 (56%), Gaps = 21/415 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++ P+ +G P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 17 RVVLLVDMDCFFCQVEEKQHPEYQGKPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 76
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAKE+C I L +VP R KAD S YR+AG EV ++L R + ERAS+DE YLD+T+
Sbjct: 77 EAKELCHDIILCKVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 136
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWLCRCDAD-- 179
+ + S EE + H +G ++ +K T + ++ D +
Sbjct: 137 NQRVEQLQTGSFALKPEELVNCHAVGYDNIGEYVNKITNRFSNPYVDDERYVLAYDPNDL 196
Query: 180 ----HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D L G I E+R V ET + CSAGIAHNK+LAKLA+GMNKP +QT +P
Sbjct: 197 PAVRQSDLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKPNKQTILPL 256
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ + L D LP+ K+K +GGK G ++ LGV +G +LK+SE LQ +GTWL N
Sbjct: 257 AQIPPLFDQLPVGKIKGMGGKFGETVCETLGVKFLGQVLKYSEKDLQRKLDEKSGTWLHN 316
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
IARGI E V R KS G K FPG + + ++QHWL +L E+++RL D +N
Sbjct: 317 IARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEINDRLEKDFIENN 376
Query: 356 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 409
R A + + D D ++ S+S PL + + + + L +A + FL
Sbjct: 377 RKAKQMVVQY----VQDIDGQEVASSRSMPLNQCDQETLVKQSLELIKANTKTFL 427
>gi|354506314|ref|XP_003515209.1| PREDICTED: DNA polymerase eta [Cricetulus griseus]
Length = 695
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 259/457 (56%), Gaps = 39/457 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--------------WLCRC- 176
+ L+++ + + + +L +G TV+E WL
Sbjct: 127 --------DRLEKLQGQPISADLLPTTYIEGLPRGPTVEETVQKEEIRKQGLLQWLGSLQ 178
Query: 177 --DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
DA D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 IDDATSPDLQLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+
Sbjct: 239 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
+ RGI + V+ R LPKS G K+FPG AL T VQ WL QL EL ERL D N
Sbjct: 299 AMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKDRNDN 358
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 413
R+A L + D R + C L +Y K+ +D F A +R + G
Sbjct: 359 DRVATQLAVSIRV----QGDKRLSSLRRCCALTQYDAHKMSQDAF----AAIRN-CNTSG 409
Query: 414 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
++T+ S +T L + A+K +C+ + F
Sbjct: 410 IQTEWSP----PLTMLFLCATKFSASAPSSCTDITVF 442
>gi|17105328|ref|NP_109640.1| DNA polymerase eta [Mus musculus]
gi|59798431|sp|Q9JJN0.1|POLH_MOUSE RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
homolog
gi|8918248|dbj|BAA97570.1| XPV [Mus musculus]
gi|26331290|dbj|BAC29375.1| unnamed protein product [Mus musculus]
gi|148691533|gb|EDL23480.1| polymerase (DNA directed), eta (RAD 30 related) [Mus musculus]
Length = 694
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/461 (40%), Positives = 257/461 (55%), Gaps = 39/461 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--------------WLCRCD 177
E L ++ + + + +L +G TV+E WL
Sbjct: 127 --------ERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQ 178
Query: 178 AD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 SDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+
Sbjct: 239 HGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLY 298
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
+ RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N
Sbjct: 299 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDN 358
Query: 355 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 413
R+A L + D R + C L RY K+ +D F A +R + G
Sbjct: 359 DRVATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSG 409
Query: 414 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
++T+ S +T L + A+K C+ + F D
Sbjct: 410 IQTEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>gi|170034418|ref|XP_001845071.1| DNA polymerase eta [Culex quinquefasciatus]
gi|167875704|gb|EDS39087.1| DNA polymerase eta [Culex quinquefasciatus]
Length = 820
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 189/490 (38%), Positives = 270/490 (55%), Gaps = 34/490 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCFY QVE++ P+++G P AVVQYN W+GGG+IAV Y AR GV R MRGD
Sbjct: 15 RVVVLVDMDCFYCQVEEKLNPEIKGQPIAVVQYNPWQGGGIIAVNYPARARGVTRHMRGD 74
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA++ CP+I L QVP GKAD+S YR+AG EV ++L ERAS+DE Y+D+T+
Sbjct: 75 EARQHCPEIVLPQVPQRGGKADISKYRDAGKEVAAVLQTFTPLLERASVDEAYMDITERV 134
Query: 131 EAMLAET-------PPESLDE---VDEEALKSHILGLESK-DGNDSKATVKEWLCRCDAD 179
A L + PE+LD V E++ ++ + DG S ++ R
Sbjct: 135 LARLHDMNVGKFHLQPETLDNTFAVGYESVGQYVQKISCDLDGRSSSQELESEEDRVAYK 194
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
D L G IV E+R V ++T + CSAGIAHNK+LAKL +G NKP +QT +P S+
Sbjct: 195 KSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKLTAGFNKPNKQTVLPLKSIS 254
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
L +L IKK+K LGGKLG + L + + L +FSE +LQ + G+W++ +ARG
Sbjct: 255 KLYQTLQIKKVKGLGGKLGEQVCELLKIEFMSQLTQFSEKQLQAHFDERMGSWMYLMARG 314
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I E V + KS G K FPG A+ +A++QHWL +L E+ +RL DL++N R A
Sbjct: 315 IDLEAVTPKFNSKSIGCCKRFPGKNAITGLATLQHWLGELANEIQDRLEKDLDENNRTAR 374
Query: 360 TLTL-HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVK 415
+T+ +A +D S ++S PL Y +I +D + FL GS G
Sbjct: 375 QMTVSYAQQIGDNDVSS-----TRSVPLVCYEAERIAKDALEAIRRNTEVFLKQGSNGAL 429
Query: 416 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMK--YFNGPDKF---GSTSEQLPDNFIDA 470
+ L +SA K +G S +K + N K G TS+ P ++ +
Sbjct: 430 NNAVKF-------LGISAGKFENNATGKKSALKEMFSNIASKAPNPGETSKDAPTSY-NI 481
Query: 471 APLSPSGSES 480
A +P+ ES
Sbjct: 482 ASNAPNSGES 491
>gi|195161139|ref|XP_002021427.1| GL25322 [Drosophila persimilis]
gi|194118540|gb|EDW40583.1| GL25322 [Drosophila persimilis]
Length = 892
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 222/370 (60%), Gaps = 18/370 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++QP+ R P AVVQYN+W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQQPEYRNRPLAVVQYNKWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+TD
Sbjct: 76 EAKDLCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITDTV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCRCDADHRD- 182
+ + + +E + + +G + +K T + + + D D
Sbjct: 136 NLRMKQLQIGAFALKPQELVNTFAVGYANIGDYVNKITNLFANPYINDERFQLSYDQNDL 195
Query: 183 --------KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+LL G I E+R V K+T + CSAGIAHNK+LAKLA+G+NKP +QT +P
Sbjct: 196 PAVRQSDIRLL-IGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAGLNKPNKQTILP 254
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+ + GL DSLP+ K+K LGGK G + LG+ +G L+K++E +LQ + GTWL+
Sbjct: 255 LAEIPGLFDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQRKFDEKNGTWLF 314
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++RGI E V R KS G K FPG + + S+QHWL +L E+++RL D +N
Sbjct: 315 YMSRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEINDRLEKDFIEN 374
Query: 355 KRIAHTLTLH 364
R A + +
Sbjct: 375 NRKAKQMVVQ 384
>gi|198465285|ref|XP_001353578.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
gi|198150090|gb|EAL31091.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
Length = 894
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 222/370 (60%), Gaps = 18/370 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCF+ QVE+++QP+ R P AVVQYN+W+GGG+IAV Y AR GV R MRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQQPEYRNRPLAVVQYNKWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
EAK++CP I L QVP R KAD S YR+AG EV ++L R + ERAS+DE YLD+TD
Sbjct: 76 EAKDLCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITDTV 135
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCRCDADHRD- 182
+ + + +E + + +G + +K T + + + D D
Sbjct: 136 NLRMKQLQIGAFALKPQELVNTFAVGYANIGDYVNKITNLFANPYINDERFQLSYDQNDL 195
Query: 183 --------KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+LL G I E+R V K+T + CSAGIAHNK+LAKLA+G+NKP +QT +P
Sbjct: 196 PAVRQSDIRLL-IGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAGLNKPNKQTILP 254
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+ + GL DSLP+ K+K LGGK G + LG+ +G L+K++E +LQ + GTWL+
Sbjct: 255 LAEIPGLFDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQRKFDEKNGTWLF 314
Query: 295 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++RGI E V R KS G K FPG + + S+QHWL +L E+++RL D +N
Sbjct: 315 YMSRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEINDRLEKDFIEN 374
Query: 355 KRIAHTLTLH 364
R A + +
Sbjct: 375 NRKAKQMVVQ 384
>gi|328700741|ref|XP_001945230.2| PREDICTED: DNA polymerase eta-like [Acyrthosiphon pisum]
Length = 744
Score = 298 bits (764), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 185/503 (36%), Positives = 266/503 (52%), Gaps = 40/503 (7%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D G R+IA VD+DCFY QVE + L G P AVVQYN W+GGG+IAV YEAR+ GV R
Sbjct: 3 DCGGKRVIALVDMDCFYCQVEVQHNQSLTGKPVAVVQYNSWRGGGIIAVNYEARDKGVNR 62
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLD 125
MRGD+A + CP + LV+V GKADLS YR A +V +L++ C +RASIDE Y+D
Sbjct: 63 HMRGDDALQACPDLNLVRVKELHGKADLSKYRTASQKVFEVLSQFSSCVQRASIDEAYVD 122
Query: 126 LTDAAEAMLAETPPESLDEVDEEAL-KSHILGLESKDGNDSKATVKEWL--CRCDADHRD 182
LT ++ + + + E L + + G + D +K WL + D
Sbjct: 123 LTSVVNHHISS----NHNVITENDLPNTFVEGYSDDNSKDKNKNLKSWLHDVYNNELQDD 178
Query: 183 KLL--ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
LL G ++V +LR + ++T F CSAGIA+NK+L+KLA G++KP QQT +P SSV
Sbjct: 179 YLLRLTIGAMMVEKLRQSIFEQTGFRCSAGIANNKILSKLACGLHKPNQQTMLPPSSVPH 238
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L +++PIKK+K LGGKLG ++ E + DL + LQ+ + T +L+ I++GI
Sbjct: 239 LFETIPIKKVKNLGGKLGERIRQEFNCEFMSDLAAIPLNDLQQKFNDKTCNFLYQISKGI 298
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
E V++RL+PKS GS KSFP LK ++ WLN L ++ ++L D E NKR A
Sbjct: 299 DNEPVESRLIPKSIGSCKSFPT--GLKVKEEIKQWLNTLMNDIVDKLKDDYEANKRKATL 356
Query: 361 LTLHASAFKSSDSDSRKKFPSKSC--PLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 418
+T+ D + K P+ C Y K+ + + S T+
Sbjct: 357 MTVSVRYL-----DKKTKLPTSQCFEVTTYSHNKLLDTAY-----------SSLCTMTEN 400
Query: 419 SHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPS 476
W+ I+ L V+ + V ++ SI YFN G+ E I+ P
Sbjct: 401 QKSLQWKNPISFLGVAIGRFVE-MNVKSSIDNYFNK----GAAKEV---KNINIQLTRPE 452
Query: 477 GSESYSTLNSTELQNELPGEQVW 499
S + S +NS + L EQ +
Sbjct: 453 NSTTCSNINSESDSSTLFNEQQF 475
>gi|339234771|ref|XP_003378940.1| DNA polymerase eta [Trichinella spiralis]
gi|316978474|gb|EFV61459.1| DNA polymerase eta [Trichinella spiralis]
Length = 633
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 179/432 (41%), Positives = 245/432 (56%), Gaps = 31/432 (7%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCFYVQVEQR +P+L G P AVVQYNEW+GGG+IAV YEAR+Y VKR MRG +A VCP
Sbjct: 1 MDCFYVQVEQRNKPELWGKPVAVVQYNEWRGGGIIAVDYEARHYNVKRGMRGQDALAVCP 60
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAET 137
+I L+QVP RGKADL+ YR A EV +L+ ERASIDE YLDLT + L +
Sbjct: 61 EIHLIQVPTQRGKADLTKYRKASEEVFHVLSLCDAVVERASIDEAYLDLTAIVKKELLDM 120
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL----------AC 187
E + E+ALK L ++ +DS ++ + ++ R+ ++
Sbjct: 121 RTEG-RYIAEDALKDTHLAVK----HDSIENIEALISLANSLMRNDIIDENAEGIVLHVI 175
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
G ++V +R Q+ ++T F CSAGIA NKMLAKLA G+NKP QQT V SSV ++PI
Sbjct: 176 GAVLVNRIRKQIFEKTNFYCSAGIAVNKMLAKLACGLNKPKQQTIVLPSSVAEFFSTVPI 235
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG---TWLWNIARGISGEE 304
+K++ LGGKLG + + T+ +L + L++ G T WL + GI +
Sbjct: 236 RKVRNLGGKLGYKITKHFEIETMRELANLNPSLLEKFVGEKTKLVLNWLLELCCGIDRDP 295
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
V R LPKS G K+FPG AL++V V+HW QL EEL ERL N RIA +LT+
Sbjct: 296 VVIRQLPKSIGCSKNFPGRNALRSVNDVRHWTRQLSEELEERL------NCRIAKSLTVG 349
Query: 365 ASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 424
+ ++++ ++ Y I +D F L Q EF + Q S +
Sbjct: 350 IRTEEKPENEANCHSSRQTFLRDYSAEVISQDAFGLIQ----EF--NTNSAKQSSIWLKP 403
Query: 425 RITALSVSASKI 436
IT LS+SAS+
Sbjct: 404 AITMLSMSASRF 415
>gi|149583604|ref|XP_001516192.1| PREDICTED: DNA polymerase eta [Ornithorhynchus anatinus]
Length = 729
Score = 295 bits (756), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 175/406 (43%), Positives = 237/406 (58%), Gaps = 21/406 (5%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P+LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPELRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV RGKA+L+ YR A +V+ +++R ER SIDE Y+DLT +
Sbjct: 67 DAKKLCPDLLLAQVREIRGKANLTKYREASVKVMEVMSRFAVIERGSIDEAYVDLTQVVQ 126
Query: 132 AMLAETPPESLDEVDEEALKS-HILGLESKDGNDSKATVKE---------WLCRC---DA 178
L + V + L + ++ GL G A KE WL D+
Sbjct: 127 ERLQKL---RGQPVPADLLPTTYVQGLPRGSGAAQGAPQKEQARQEGLGQWLDSLPFGDS 183
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
D L G +IV E+R + K+T + CSAGI+HNK+LAKLA G+NKP +QT + V
Sbjct: 184 SSPDLRLTVGAVIVEEMRAAIEKDTGYQCSAGISHNKVLAKLACGLNKPNRQTLLSHGFV 243
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L D +PI K++ LGGKLG S+ + LGV +G L F+E +LQ +G TG+WL+ + R
Sbjct: 244 PELFDQMPIGKIRSLGGKLGASITDNLGVEYMGQLTHFTESQLQSHFGEKTGSWLFAMCR 303
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
GI + V+ R +P + G K+FPG AL T VQ WL QL EL ERL D + N R+A
Sbjct: 304 GIEHDPVKPRQVPNTVGCSKNFPGKTALATEEQVQWWLLQLALELEERLNKDRDDNDRVA 363
Query: 359 HTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQA 403
L++ A D R + CPL RY K+ D L ++
Sbjct: 364 THLSVSARI----QGDKRLSSLRRGCPLTRYDARKMSSDALALIRS 405
>gi|145352281|ref|XP_001420480.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580714|gb|ABO98773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 534
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 256/478 (53%), Gaps = 54/478 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRK------------QPKLRGLPTAVVQYNEWKGGG-------- 51
R++AH+DLD FY QVE+R + +P VVQYN ++ GG
Sbjct: 10 RVVAHLDLDAFYCQVERRDLRAKTAAGRRDGRASAEDVPLVVVQYNPFERGGVRALAPDD 69
Query: 52 ------------LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRN 99
LIAV YEAR GVKR+MRG EA+ + P +VQVP R KADL+ YR
Sbjct: 70 DRELRDGFENHSLIAVSYEARARGVKRNMRGREARALAPACAVVQVPTRRSKADLTLYRE 129
Query: 100 AGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES 159
AG EV ++LAR G ERASIDE YLDLT++A+ +L ET + + E+A SH G +
Sbjct: 130 AGREVAAVLARGGTIERASIDEAYLDLTESAKKVLEET---AWATILEKARTSHAAGASA 186
Query: 160 KDGNDSKATVKEWLCRCDADHRD--KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
G + W R +++ R+ KLLA G I LR + E +T SAGIA NKML
Sbjct: 187 VSGKGYASVA--WWNRDESEWREEEKLLAAGAYICFNLRKACVDELGYTLSAGIALNKML 244
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKL SGMNKPA QT + LLD LPI +++ LG K G L + L V T+G+L +
Sbjct: 245 AKLTSGMNKPASQTVLCPDHTSTLLDELPIDRIRGLGAKFGRELADGLNVKTIGELARTP 304
Query: 278 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 337
KL+E G W+ ++ G+ + V+AR +PKS G+GK+F G A++++AS +HWL
Sbjct: 305 LRKLEEVCGEEKAQWVRKVSLGLDDDPVKAREMPKSIGTGKTFRGALAIRSIASAKHWLA 364
Query: 338 QLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 397
+L EL++R +D E+ R+ LTL S+ ++ S S+ CPLR G ++ +D
Sbjct: 365 ELTAELNDRCEADEEEWNRVPKLLTLGLSSPDERETSS--GHCSRRCPLRPGADEMAQDA 422
Query: 398 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDK 455
L S W IT +SVSAS V + + +++ F K
Sbjct: 423 LTLLS-------------KWASGRERWSITGMSVSASNFVSLEKDSGDVVEMFKNATK 467
>gi|355748582|gb|EHH53065.1| hypothetical protein EGM_13625 [Macaca fascicularis]
Length = 690
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 176/454 (38%), Positives = 248/454 (54%), Gaps = 46/454 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT + +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSSVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T EQN R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALAT----------------------REQNDRVATQL 344
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 345 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 395
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K +C+ + F D
Sbjct: 396 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 425
>gi|355561734|gb|EHH18366.1| hypothetical protein EGK_14943 [Macaca mulatta]
Length = 690
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 176/454 (38%), Positives = 248/454 (54%), Gaps = 46/454 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT + +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSSVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T EQN R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALAT----------------------REQNDRVATQL 344
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L RY K+ D F + + + G++T+ S
Sbjct: 345 AVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP 395
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+T L + A+K +C+ + F D
Sbjct: 396 ----PLTMLFLCATKFSASAPSSCTDITSFLSSD 425
>gi|444725442|gb|ELW66006.1| DNA polymerase eta [Tupaia chinensis]
Length = 681
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/450 (38%), Positives = 245/450 (54%), Gaps = 46/450 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A +D+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALLDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRECRGKANLTKYREASVEVMQIMSRFAVIERASIDEAYIDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EW---LCRCDADHR 181
L + P S D + ++ G + + K ++ +W L ++
Sbjct: 127 ERLQKLQGQPISADLLPTTYIEGFPQGPATAEDTVEKEEMRKKGLFQWLDSLALVNSTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERQTSFQCSAGISHNKVLAKLACGLNKPNRQTLVSLGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPICKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPKS G K+FPG AL T EQN R+A L
Sbjct: 307 HDPVKPRQLPKSIGCSKNFPGKTALAT----------------------REQNDRVATQL 344
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
+ D R + C L Y K+ D F A +R + G++T+ S
Sbjct: 345 AVSIRV----QGDKRLSSLRRCCALSHYDAHKMSHDAF----AAIRN-CNTSGIQTEWSP 395
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T L + A+K +C+ + F
Sbjct: 396 ----PLTMLFLCATKFSACAPSSCTDITAF 421
>gi|195440450|ref|XP_002068055.1| GK12166 [Drosophila willistoni]
gi|194164140|gb|EDW79041.1| GK12166 [Drosophila willistoni]
Length = 864
Score = 288 bits (737), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 163/423 (38%), Positives = 236/423 (55%), Gaps = 23/423 (5%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEW-KGGGLIAVGYEARNYGV 64
P + R+I VD+DCF+ QVE+++QP R P AVVQ++ W K GG+IAV Y AR G+
Sbjct: 10 PQNKYDRVILLVDMDCFFCQVEEKEQPIYRNKPLAVVQFSNWSKNGGIIAVNYAARAKGI 69
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVY 123
R MR DEAK++ P+I LV+VP R KAD + YR+AG EV ++L + + ERAS+DE Y
Sbjct: 70 TRHMRADEAKDLLPEIVLVKVPNIRDKADTTKYRDAGKEVANVLQKFTKQLERASVDEAY 129
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
LD+T+ E + +E + + +G ++ +K T K + D R +
Sbjct: 130 LDITETVNQRQKELQTGAFTLQPQELVNTFAVGYDNMGEYVNKIT-KRFSNPYMDDERFQ 188
Query: 184 L----------------LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
L L G I E+R V KET + CSAG+AHNK+LAKLA+G+NKP
Sbjct: 189 LVYDQNDLPSVRQSDIRLLIGACIAGEVRAAVKKETGYECSAGVAHNKILAKLAAGLNKP 248
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
+QT +P + GL ++LP+ K+K LGGK G + L + +G+LLKFSE +LQ +
Sbjct: 249 NKQTILPLDEIPGLFETLPVGKIKGLGGKFGEIVCETLSIKFLGELLKFSEGELQRKFDE 308
Query: 288 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
GTWL NI RGI E V R KS G K FPG + + ++QHWL++L E++ERL
Sbjct: 309 KNGTWLANICRGIDLECVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLSELATEITERL 368
Query: 348 CSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 406
D +E N+R + + + S + S + P Y + + +L +A +
Sbjct: 369 EKDAIENNRRAKQMVVQYVQDLDGEEVASSR---SNALPNHYDKETLANISLDLIKANTK 425
Query: 407 EFL 409
FL
Sbjct: 426 TFL 428
>gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 454
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 236/427 (55%), Gaps = 45/427 (10%)
Query: 50 GGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA 109
G LIAVGYEAR GVKR MRGD+A++VCP + LVQVPVA GKADL+ YR +G +V++ILA
Sbjct: 28 GSLIAVGYEARAKGVKRGMRGDDARKVCPDLNLVQVPVAHGKADLTLYRASGKQVLNILA 87
Query: 110 RKGRCERASIDEVYLDLTDAAEAMLAET---PPESLDEVDEEALKSHILGLESKDGNDS- 165
R ERASIDE YLD+T+ A+ LA + PP L ++ + + G ++
Sbjct: 88 RLSVAERASIDECYLDITEEAKRRLAASSAHPP----------LPINVGEVHGEGGTEAW 137
Query: 166 -KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 224
V W +LLACG +V ELR V +E ++CSAGIAHNK+LAKLASGM
Sbjct: 138 WHRPVGAW------GPGQRLLACGAAVVAELRAAVRRELGYSCSAGIAHNKILAKLASGM 191
Query: 225 NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 284
+KP+QQT V V GL+ LPI K++QLGGK G + L +TTVG+L +L+
Sbjct: 192 HKPSQQTLVTLDCVPGLMAGLPIPKLRQLGGKFGEEIMTALNITTVGELSAVPLRRLEAV 251
Query: 285 YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 344
WL ++RGI EEV+ R LP+S GK+F G ALK +V WL +L +EL
Sbjct: 252 CSQADALWLHRLSRGIDDEEVKERQLPQSISCGKTFRGHTALKAFPAVHKWLGELGDELE 311
Query: 345 ERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAK-IQEDTFNLFQA 403
ER+ +D N+R+ LT+ + + S+SC LR ++ + ED L
Sbjct: 312 ERITADRADNERVPRLLTV--GMWGEGGPGTSGGSVSRSCQLRRPESQPMAEDGLKL--- 366
Query: 404 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF--------NGPDK 455
+K S GW IT+L ++AS +G+ +I ++ P
Sbjct: 367 ----------IKRWASDRPGWAITSLYMTASNFQAAPTGSSTITRFLKPKSAPGQQSPPP 416
Query: 456 FGSTSEQ 462
GST+ Q
Sbjct: 417 SGSTAAQ 423
>gi|47223238|emb|CAF98622.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 234/454 (51%), Gaps = 91/454 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCFYVQVEQR P L+ P V QY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRINPALKNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP +++ +V + GKADL+ YR A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTLYREASVEVIEVMSRFAVIERASIDEAYMDLTAAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHIL------GLESKDGNDSKAT--------------VKE 171
+ L +++ +++H+L G AT +++
Sbjct: 127 --------QRLKDLNNWQIQAHLLKATYVQGFPPNPPERPAATEDVAHDREEQRARGLQQ 178
Query: 172 WLCRC------DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 225
WL + + LA G LIV E+R V K+T F CSAGI+HNK+LAKLA G+N
Sbjct: 179 WLAMLPLPAAGEQSSAELQLAVGALIVEEMRAAVEKDTGFRCSAGISHNKVLAKLACGLN 238
Query: 226 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 285
KP +QT +P SV L SLPI K++
Sbjct: 239 KPNRQTLLPLGSVGELFSSLPIGKIQ---------------------------------- 264
Query: 286 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 345
WL+++ RG+ E V+ R LPKS G K+FPG +L T VQ+WLNQL EL E
Sbjct: 265 ------WLYDLCRGVDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLNQLALELEE 318
Query: 346 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAG 404
RL D E N R+A LT+ D R S+ C L RY K+ D+F + ++
Sbjct: 319 RLTKDREANGRVAKMLTVGVRQL----GDKRPSSFSRCCALVRYEATKLATDSFAIIRS- 373
Query: 405 LREFLGSFGVKTQGSHYSGWR--ITALSVSASKI 436
+ T G H + W +T L +SA+K
Sbjct: 374 ---------LNTAGPHQATWTPPLTMLHLSATKF 398
>gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta
CCMP2712]
Length = 334
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/339 (47%), Positives = 210/339 (61%), Gaps = 36/339 (10%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN----------------EWKGGGLIA 54
R++AHVD+DCFYVQVEQR+ LRG P AV+QYN + G LIA
Sbjct: 2 GRVVAHVDMDCFYVQVEQRRDESLRGKPVAVIQYNPNGDLQDVRPDENRRCDHSDGSLIA 61
Query: 55 VGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGR 113
V YEAR GVKR MRG EA++ CP + L+QVPVA K+D++ YR AG+EVV++LAR
Sbjct: 62 VSYEARAKGVKRIMRGKEARQACPDLILIQVPVAHKKSDINLYREAGAEVVNVLARFSSA 121
Query: 114 CERASIDEVYLDLTDAAEAML--------AETPPESLDEVDEEALKSHILGLESKDGNDS 165
CERASIDEVY D+TDAA L A+ P LDE+D K+ + G E + GN
Sbjct: 122 CERASIDEVYCDITDAALLQLDEIERNFGADVGPTLLDEMD----KTWVAGYEQQTGNGQ 177
Query: 166 KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 225
+ + L R R LLA G +VT++R VL+ET FTCSAGI+HNK+LAKL SG++
Sbjct: 178 EEWWRRPLSRWKTSER--LLAAGAQVVTKMRRAVLEETSFTCSAGISHNKILAKLGSGLH 235
Query: 226 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGG-KLGTSLQNELGVTTVGDLLKFSEDKLQES 284
KP QQT +P + + L+ LPI +++ LGG KLG ++Q E V TVG+L K L
Sbjct: 236 KPNQQTILPTEAAQKLMQDLPISRLRGLGGEKLGKAIQEEFHVETVGELQKIPCPLLVSK 295
Query: 285 YGFNT----GTWLWNIARGISGEEVQARLLPKSHGSGKS 319
+G + G W++ IA+GI + V+ + L KS GSGKS
Sbjct: 296 FGDSPKPPGGLWVYRIAKGICLQPVKDQELAKSRGSGKS 334
>gi|332234353|ref|XP_003266375.1| PREDICTED: DNA polymerase eta [Nomascus leucogenys]
Length = 723
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 173/466 (37%), Positives = 245/466 (52%), Gaps = 38/466 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM------------LAKLASGMNKPAQ 229
D L G +IV E+R + +ET F CSAGI+HNK+ A + M +
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKIDNLTSPDLQLTVGAVIVEEMGAAIE 246
Query: 230 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 289
+ T + S I + LGGKLG S+ LG+ +G+L +F+E +LQ +G
Sbjct: 247 RETDIYDVTYQFFVSFVIS--RSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKN 304
Query: 290 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 349
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 305 GSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTK 364
Query: 350 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREF 408
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 365 DRNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN----- 415
Query: 409 LGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+ G++T+ S +T L + A+K +C+ + F D
Sbjct: 416 CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 457
>gi|332030091|gb|EGI69916.1| DNA polymerase eta [Acromyrmex echinatior]
Length = 787
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 218/383 (56%), Gaps = 44/383 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS RI+ +D+DCF+ QVE + QP+ G P AVVQYN+W+ GG+IAV YEAR++GV R
Sbjct: 3 SSNNRIVVLIDMDCFFCQVEIKLQPQHEGKPLAVVQYNQWEMGGIIAVNYEARSFGVTRH 62
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVYL 124
MRG EAKE CP I LV VP RGKAD S YR AG EV+ ++ K C ERAS+DE YL
Sbjct: 63 MRGKEAKEKCPDIVLVSVPCLRGKADTSRYRKAGREVIQVI--KKHCNVIERASVDEAYL 120
Query: 125 DLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---EWLC----R 175
D+TD + LA + P+ L ++++G + N+ + K W+
Sbjct: 121 DITDIVDKRLAASKVSPKQLISF---LANTYVVGYSEINKNNEEERCKGLQTWILNSFKE 177
Query: 176 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D KL G++I LAKLA G++KP +QT +P
Sbjct: 178 LHDDQAQKLAIAGIII-------------------------LAKLACGLHKPNRQTILPE 212
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
++V L +LP+KK++ LGGK G + LG +GDLL++S ++L++ + TG WL+N
Sbjct: 213 AAVSSLYSTLPVKKVRNLGGKFGDVVVESLGCKVMGDLLQYSLEQLKKHFDEKTGFWLYN 272
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
IARGI E V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL D +N+
Sbjct: 273 IARGIDDEPVTNRLLAKSIGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEEDFIENQ 332
Query: 356 RIAHTLTL--HASAFKSSDSDSR 376
R A L + H +S+ S +R
Sbjct: 333 RRATLLVISYHYYHNRSTVSQTR 355
>gi|291244467|ref|XP_002742117.1| PREDICTED: DNA-directed DNA polymerase eta-like, partial
[Saccoglossus kowalevskii]
Length = 289
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/290 (49%), Positives = 192/290 (66%), Gaps = 14/290 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS-MRG 70
R+IA VD+DCFYVQVEQR P+ RG P VVQYN WKGGG+IAVGYEAR GV+R MR
Sbjct: 3 RVIALVDMDCFYVQVEQRLLPETRGKPCIVVQYNHWKGGGIIAVGYEARAKGVRRGGMRA 62
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDA 129
DEAKE+CP I + +VP RGKA+LS YR+A EV+ +L +C ERAS+DE Y+DLTD
Sbjct: 63 DEAKELCPDIHVFRVPEKRGKANLSRYRDACVEVMEVLCTFSKCVERASVDEAYIDLTDE 122
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGND---------SKATVKEWLCRCDADH 180
+ + E +D + + ++G + K+ ND + V +WL C +
Sbjct: 123 IDKKMEEIG--DVDVSIDMLPNTFVVGWDGKENNDPNEEPPLESQTSGVFQWLNNCHSIE 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
K LA G +IV E+R V ++TEF CSAG++HNK+LAKLA G+NKP +QT +PF SV+
Sbjct: 181 H-KRLAIGAVIVEEMRKAVYQKTEFRCSAGVSHNKILAKLACGINKPNKQTVLPFESVEK 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 290
L +P+ K++ LGGKLG LQ+ELG+ +GD+ KF+E +LQ G TG
Sbjct: 240 LFKLIPVNKVRHLGGKLGQQLQDELGMQYMGDICKFTEKELQIKLGDKTG 289
>gi|242016043|ref|XP_002428648.1| DNA polymerase IV, putative [Pediculus humanus corporis]
gi|212513311|gb|EEB15910.1| DNA polymerase IV, putative [Pediculus humanus corporis]
Length = 292
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/290 (50%), Positives = 196/290 (67%), Gaps = 11/290 (3%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS +R+IA VD+DCFY QVE R P+L+G P AVVQYN+WKGGG+IAV YEAR YGV RS
Sbjct: 5 SSTSRVIALVDMDCFYCQVEARLNPELKGKPLAVVQYNQWKGGGIIAVNYEAREYGVTRS 64
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDL 126
MRGDEAKE CP I LV VP RGKADLS+YR A EV ++ + C +RASIDE YLDL
Sbjct: 65 MRGDEAKEKCPDIVLVSVPTIRGKADLSNYREASDEVAAVFSEFCECVQRASIDEAYLDL 124
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILG---LESKDGNDSKATVKEWLCRCD----AD 179
+ A + +AE E++D D + ++ILG L++KD + EW+ + +
Sbjct: 125 SKAVDDYIAEH-KENIDVRDLPS--TYILGHCDLKNKDEEKRLEGLAEWIRITENEKMVE 181
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
+ D LA G +I+ ++R ++L++T F CSAGIAHNK+LAKL +G++KP +QT +P +SV
Sbjct: 182 NADYKLAIGGIIMEKMRSKILEKTSFHCSAGIAHNKILAKLTAGLHKPKKQTILPHNSVP 241
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 289
L + LPI+K+K LGGKLG + +L V + +L KFS LQ+ + T
Sbjct: 242 ELYEKLPIRKVKSLGGKLGKHVSEKLSVNYMSELYKFSLQDLQQEFDEKT 291
>gi|449675574|ref|XP_004208438.1| PREDICTED: DNA polymerase eta-like, partial [Hydra magnipapillata]
Length = 333
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/325 (45%), Positives = 190/325 (58%), Gaps = 6/325 (1%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ VD+DCFYVQV QRK P+L G P AVVQYN WKGGG+IAVGYEAR +GV R MRGD
Sbjct: 8 RVVLLVDMDCFYVQVVQRKNPELVGKPCAVVQYNAWKGGGIIAVGYEARKFGVTRQMRGD 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLT--- 127
EAKE CP I LV VP RGKADL+ +R AG+EV+ ILA C ERAS+DE Y+DLT
Sbjct: 68 EAKEKCPDIHLVPVPENRGKADLTQFREAGAEVIEILAGFADCLERASVDEAYMDLTELI 127
Query: 128 --DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
D + E + + + + + GL K+W + L
Sbjct: 128 NRDFCNYDIEEVALHTFQNTNIVGIDNMVTGLTDTQDILKCDLYKQWHEVLHRSEENLKL 187
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
A G I ++R +V ++ FTCSAGI NKMLAK+ +G +KP QQT V +V + S
Sbjct: 188 AIGATIADKMRKEVKEKLGFTCSAGIGQNKMLAKIVAGFHKPDQQTLVLPDNVAEMFQST 247
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
++K++ LGGKLG L V + DLLK S L++ G +G ++ + RGI E V
Sbjct: 248 KMRKIRSLGGKLGKQLAETFNVEYMSDLLKISSHDLEKVIGKKSGDLVYGLCRGIDYEPV 307
Query: 306 QARLLPKSHGSGKSFPGPRALKTVA 330
+ R LPKS G K+F G L T A
Sbjct: 308 RPRQLPKSVGCSKNFNGKLTLSTTA 332
>gi|111308137|gb|AAI21715.1| Zgc:136881 [Danio rerio]
Length = 294
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 191/296 (64%), Gaps = 15/296 (5%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D R++A VD+DCFYVQVEQR +P+L+ P V QY WKGGG+IAV YEAR +GV R
Sbjct: 2 DFGKERVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGR 61
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M D+A+++CP +++ +VP A GKADL+ YR A EV+ +++R ERASIDE Y+DL
Sbjct: 62 NMFADDARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFAVIERASIDEAYMDL 121
Query: 127 TDAAEAMLAETPPESLDEVDEEALK-SHILGLESKDGN-------DSKATVKEWL----C 174
T + + L T S+ ++ + LK +HI G ++ N A +++WL
Sbjct: 122 TASVQERLKNT---SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSS 178
Query: 175 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
++ D LA G LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P
Sbjct: 179 STESSPADLRLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLP 238
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 290
SSV L +LPI K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG
Sbjct: 239 LSSVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTG 294
>gi|414884037|tpg|DAA60051.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 397
Score = 261 bits (667), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 132/214 (61%), Positives = 170/214 (79%), Gaps = 2/214 (0%)
Query: 104 VVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 163
VV+ILA KG+CERASIDEVYLDLTDAA+ ML + PP+S + + EA KS+ILGL + D +
Sbjct: 179 VVAILASKGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSNILGLPA-DAS 237
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
+ + V+ WLC+ +AD++DKLL CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SG
Sbjct: 238 EKEKNVRAWLCQSEADYQDKLLPCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSG 297
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
M+KPAQQT VP SSV+ LL SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE
Sbjct: 298 MHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQE 357
Query: 284 SYGFNTG-TWLWNIARGISGEEVQARLLPKSHGS 316
YG NTG + AR +E ++L + +GS
Sbjct: 358 QYGVNTGHGMVAAFARAAWLKEYHEKVLVEIYGS 391
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQ 25
MPVARP+ R+IAHVD+DCFYVQ
Sbjct: 141 MPVARPEPQEPRVIAHVDMDCFYVQ 165
>gi|241830533|ref|XP_002414817.1| DNA polymerase eta, putative [Ixodes scapularis]
gi|215509029|gb|EEC18482.1| DNA polymerase eta, putative [Ixodes scapularis]
Length = 727
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 225/426 (52%), Gaps = 80/426 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I+ VD+DCFYVQVEQR P+ +G P AV QYN ++GGGLIAV YEAR GVKR MRG+
Sbjct: 8 RVISLVDMDCFYVQVEQRLAPEWKGKPCAVAQYNTFQGGGLIAVNYEARALGVKRGMRGE 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
+A ++ + L +VP RGKADL+ YR+AG+EV+S+L + G +RASIDE YLDLT
Sbjct: 68 QALKLAKDLHLFRVPEQRGKADLTRYRDAGAEVLSVLCQFGAVVQRASIDEAYLDLTPVV 127
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK-ATVKEWLCR-CDADHRDKLLACG 188
A P+SL +H++G + G S+ V EWL D D LLA G
Sbjct: 128 TAQATFPSPDSLPS-------THVVGYPEERGVRSREEAVAEWLSTIVDPGGGDSLLARG 180
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNK-------------------------------ML 217
+V +R VL++T F CSAG+AHNK +L
Sbjct: 181 CALVERIRAAVLEQTGFDCSAGVAHNKVLAKLVCGLHKPRQQTVLPHSAVPTLFATLPVL 240
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKL G++KP QQT +P S+V L +LP+ K++ LGGKLG ++ +L V S
Sbjct: 241 AKLVCGLHKPRQQTVLPHSAVPTLFATLPVHKLRNLGGKLGEDVREKLQV---------S 291
Query: 278 EDKLQES-YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 336
+D L S +G TG WL+ +ARG+ E V R LP+S G GK+F G AL +
Sbjct: 292 QDYLCLSVFGHRTGQWLYKLARGVDDEPVTCRKLPQSIGCGKNFTGSSALHSA------- 344
Query: 337 NQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQE 395
++N R A LT+ + + SR SCP+ Y +I +
Sbjct: 345 ---------------DKNDRTAQLLTVGVTRSGHQGAISR------SCPMVAYCATRIAQ 383
Query: 396 DTFNLF 401
D +
Sbjct: 384 DALAVL 389
>gi|413943903|gb|AFW76552.1| hypothetical protein ZEAMMB73_679088 [Zea mays]
Length = 409
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 170/235 (72%), Gaps = 1/235 (0%)
Query: 40 AVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRN 99
A +N + + Y + V MRGDEAK VCP I LVQVPVARGKADL+ YR+
Sbjct: 107 AFFHFNAIRDHEFASKPYVGILHCVSLLMRGDEAKRVCPGINLVQVPVARGKADLNLYRS 166
Query: 100 AGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES 159
AG+EVV+ILA KG+CERASIDEVYLDLTDAA+ ML + PP+S + + EA KS+ILGL +
Sbjct: 167 AGAEVVAILASKGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSNILGLPA 226
Query: 160 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
D ++ + V+ WLC+ +AD++DKLL CG +IV +LR++VL+ET+FTCSAGIAHNKMLAK
Sbjct: 227 -DASEKEKNVRAWLCQSEADYQDKLLTCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAK 285
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 274
L SGM KPAQQT VP SSV+ LL SLP+KKM + K+ + E + V +L
Sbjct: 286 LVSGMRKPAQQTVVPSSSVQDLLASLPVKKMYHVHEKITNFMAPEPMILFVSGVL 340
>gi|414884038|tpg|DAA60052.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 585
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 158/187 (84%), Gaps = 1/187 (0%)
Query: 104 VVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 163
VV+ILA KG+CERASIDEVYLDLTDAA+ ML + PP+S + + EA KS+ILGL + D +
Sbjct: 179 VVAILASKGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSNILGLPA-DAS 237
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
+ + V+ WLC+ +AD++DKLL CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SG
Sbjct: 238 EKEKNVRAWLCQSEADYQDKLLPCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSG 297
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
M+KPAQQT VP SSV+ LL SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE
Sbjct: 298 MHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQE 357
Query: 284 SYGFNTG 290
YG NTG
Sbjct: 358 QYGVNTG 364
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQ 25
MPVARP+ R+IAHVD+DCFYVQ
Sbjct: 141 MPVARPEPQEPRVIAHVDMDCFYVQ 165
>gi|324509837|gb|ADY44123.1| DNA polymerase eta [Ascaris suum]
Length = 602
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 216/373 (57%), Gaps = 24/373 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR-SMRG 70
R+IA +D+DCFY QVEQR QP L G P V QY+ +GGG++AV YEAR +G+KR M
Sbjct: 7 RVIALIDMDCFYAQVEQRLQPHLWGKPIIVAQYSNIRGGGILAVSYEARPFGIKRFGMFA 66
Query: 71 DEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILA---RKGRCERASIDEVYLD 125
++AK +CP++ + VP KADL+ YRNA +EV+ +L + ERASIDE YLD
Sbjct: 67 EQAKALCPELTVCYVPSGEHSDKADLTRYRNASAEVLDVLNGFDSRIIVERASIDEAYLD 126
Query: 126 LTDAAEAML-AETPPE----SLDEVDEEALKSHILGLESKDGN------DSKATVKEWLC 174
L++ + ++ +ETP SLD L + G + K N D +A ++EW+
Sbjct: 127 LSELVDYIVESETPSLKYSCSLDMFPTTHLAN---GNDIKASNETIWKYDREANLREWII 183
Query: 175 RCDADHRDKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
R L LA IV +R ++ ++T+F+CSAGI NKM+AKL +KP QQT +
Sbjct: 184 EACVQQRQALRLAVAAEIVERIRAEIKEKTQFSCSAGIGSNKMIAKLICSRHKPGQQTII 243
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
P + + S I ++ LGGKLG +L N + T+ +L S +L E + W+
Sbjct: 244 PDEFIAEIFRSTRILSIRNLGGKLGHALMNAFSIETMSELCGISMQQLSEHFSAQ-AKWI 302
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+NIARGI E V+AR S K+FPG AL + + VQ WL+ L +EL++RL D +
Sbjct: 303 YNIARGIDDEPVRARDKQSSIAVSKNFPGSSALTSTSEVQTWLDGLVKELAKRLIDDQIK 362
Query: 354 NKRIAHTLTLHAS 366
NKR A TLH S
Sbjct: 363 NKRTA--CTLHVS 373
>gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis]
Length = 720
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 193/486 (39%), Positives = 260/486 (53%), Gaps = 70/486 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEW----------------KGGGLIAV 55
+ I HVDLD FY QVE ++ P+LRG P VVQYN + G LIAV
Sbjct: 8 KAICHVDLDAFYAQVEVKQHPELRGQPVGVVQYNPYGLLETRGPAENRVMNSSNGSLIAV 67
Query: 56 G-------------YEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGS 102
YEAR GVKR+MRGD+A+ CP I+LV P A GKADL+ YR G
Sbjct: 68 RRAAPRRAAPPVLLYEARAAGVKRNMRGDQARAACPTIQLV--PTAHGKADLTLYRGEGK 125
Query: 103 EVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG 162
+V IL+R ERASIDE YLDLTD A+ LA + + A + H++ ++G
Sbjct: 126 KVQDILSRLATTERASIDECYLDLTDEAQRRLAAC--GGMPPLPPSAEQVHVM----QEG 179
Query: 163 NDSKATVKEWLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
A W R H ++LLAC ELR V E ++CSAG+AH+K++A
Sbjct: 180 GFVGAAA--WWQR--PPHHWLPGERLLACAAAAAAELRAAVRAELGYSCSAGVAHSKLMA 235
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL SG++KPAQQT +P S+V LL LPI K+K LGGKLG + +ELGV TVG L
Sbjct: 236 KLCSGLHKPAQQTVLPASAVAALLGQLPIPKLKGLGGKLGERVMSELGVETVGQLAAVPL 295
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
+L+ ++G WL +ARG + ++V+ R L KS G GK+F G +AL+ +A+V WL +
Sbjct: 296 SRLEAAFGEKEAQWLAALARGATDDKVEERRLAKSVGCGKTFRGRQALRDLAAVHKWLLE 355
Query: 339 LCEELSERLCSDLEQNKRIAHTLTLHASA----FKSSDSDSRKKF--------PSKSCPL 386
L EL+ERL DL++N R A LT+ + + F ++SCPL
Sbjct: 356 LGGELAERLQEDLQENSREAKLLTVSFAPQLPWVATQQPGGTALFHAAPGYHATTRSCPL 415
Query: 387 RYGTAK-IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS 445
R TA+ I ED L + E QG GW ++ + V+AS V V S +
Sbjct: 416 RKATAEAIAEDALALIKRWAAE---------QGQ---GWSLSTMDVAASNFVAVQSAASA 463
Query: 446 IMKYFN 451
I ++F
Sbjct: 464 ITRFFK 469
>gi|312079328|ref|XP_003142126.1| hypothetical protein LOAG_06542 [Loa loa]
gi|307762710|gb|EFO21944.1| hypothetical protein LOAG_06542 [Loa loa]
Length = 545
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 218/376 (57%), Gaps = 30/376 (7%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN--EWKGGGLIAVGYEARNYGVKRSMR 69
RIIA +D+DCFYVQVEQR QP L G P AVVQ++ ++GGGL+AV YEAR++G+KR M
Sbjct: 5 RIIALIDMDCFYVQVEQRLQPHLYGKPVAVVQHSSANYRGGGLLAVSYEARSFGIKRGMF 64
Query: 70 GDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILAR---KGRCERASIDEVYL 124
G++AK +CP + L VPV KAD++ YR+A +EV +L + ERAS+DE YL
Sbjct: 65 GEQAKALCPDLTLCYVPVGEHIDKADITRYRDASAEVFKVLHEFDSRIVVERASVDEAYL 124
Query: 125 DLTDAAEAMLAETPPESLDEVDEEAL----KSHILGLESKDGNDSKATVKEW-LCRCDAD 179
DL+ + + T P S+ ++ A+ +H+ + D N+ K + +W R ++
Sbjct: 125 DLSALVQHIFETTNP-SVKYMEPNAVDLFPTTHVA--DGADLNEDK--IPDWKYDRVESL 179
Query: 180 H---------RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
H +D+ L G ++ ++R + K T F CSAGI +KM+AKL +KP
Sbjct: 180 HSFISEAYETQDEYKLKLIIGADVIEQIRSAIKKNTAFNCSAGIGSSKMIAKLVCSRHKP 239
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
QQT V ++ + + PI +++ LGGKLG +L + V T+G+L + S L E +
Sbjct: 240 GQQTVVFNEAIPKVFEYTPINEVRNLGGKLGRALVEKFDVKTMGELSQISMSDLSECFPA 299
Query: 288 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
W++NIARGI E+V AR S K+FPGP ALKT V+ WL L +EL +RL
Sbjct: 300 Q-AKWIYNIARGIDEEKVTARDKQSSVAVSKNFPGPNALKTDGDVKFWLEGLIKELVKRL 358
Query: 348 CSDLEQNKRIAHTLTL 363
D N R A TL +
Sbjct: 359 IDDQITNIRTASTLHI 374
>gi|307168868|gb|EFN61792.1| DNA polymerase eta [Camponotus floridanus]
Length = 764
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 210/723 (29%), Positives = 334/723 (46%), Gaps = 123/723 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCF+ QVE + QP+ G P AVVQYN+W+ GG+IAV Y+AR++GV R MRG
Sbjct: 7 RIVVLIDMDCFFCQVETKLQPQHEGKPLAVVQYNQWEMGGIIAVNYQARSFGVTRHMRGK 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EAKE CP I L VS+ +G+ + + +Y+ + E
Sbjct: 67 EAKEKCPDIVL----------------------VSVPCLRGKADTSRYIYIYIYMCVYLE 104
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
+ L++ I +DS + + H KL GV I
Sbjct: 105 ER-------------SQGLQTWI--------SDSFKELHDT-------HAQKLAVAGV-I 135
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
V E+R + KET+F CSAGIA NK+LAKLA G++KP QT +P ++V L +LP+KK++
Sbjct: 136 VEEIRASIYKETKFRCSAGIAQNKILAKLACGLHKPNCQTILPKTAVSSLFSTLPVKKVR 195
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
LGGK G + LG +GDL+++S ++LQ+ + TG WL+NIARGI E V RLL
Sbjct: 196 NLGGKFGDIVVESLGCNVMGDLVQYSLEQLQKRFDEKTGFWLYNIARGIDDEPVTNRLLS 255
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS + K FPG +A+ ++ ++HW L E+ ERL D E+N+R A LT+ +++
Sbjct: 256 KSIAACKKFPGKQAITSLEVLKHWAKDLTAEVCERLEQDYEENQRRATLLTISYHYYQNR 315
Query: 372 DSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 430
+ S+ ++S L Y KI ++ TQ + +
Sbjct: 316 STVSQ----TRSLVLNSYKPDKIASQCVDVITKA-----------TQCP------VAYMG 354
Query: 431 VSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQ 490
+SASK VP S +K+F S++ ID + + S ++ + E++
Sbjct: 355 ISASKFVPSKESD-SFLKFFKNVTSRDRKSDKASSE-IDKSGIVYSPRNMINSSSHLEIK 412
Query: 491 NELPGEQVWIEHSMADLGQLEMKA-NTWNGLDPSCSISKQTSGQWFHSGTESSSSLDQNK 549
E P V E S +KA + S I K + S L+ +
Sbjct: 413 EEKPFTIVSKEDSF-------LKAERKLQKIKESPMIKKSVTRTNERIIKTSEKILNNSL 465
Query: 550 PQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSI------------LNFFKSG-----DL 592
N +DS + +K Q +++ LKDK S + +N +K+G D
Sbjct: 466 NMNSEDSPISKRVVKLVQVCNERDKLKDKRLSDVKINKNDFQDSFFMNIYKTGKQEYPDN 525
Query: 593 SCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGD-----CLSESNQNQVNI 647
GN D + E + KQ ++ E+ NS D C+ E + + +
Sbjct: 526 ESMDGNIDVKQLEY-----------DGKQSSV-DEKSANSIDDYNSNLCIQEDAREKPST 573
Query: 648 PKERLAEAATTSTSTDRCGSDQIQQRSESWKLR-----IEEIDPSVIDELPKEIQDEIQA 702
+ + + S + + Q S +LR +++IDP ++ LP ++Q+E +
Sbjct: 574 SHAYIHVSNNDANSMKKSNKETSVQEP-SVRLREIFPNLDDIDPDILSLLPTDLQEEARL 632
Query: 703 WLR 705
+ +
Sbjct: 633 YTK 635
>gi|402588248|gb|EJW82181.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 518
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 212/373 (56%), Gaps = 24/373 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEW--KGGGLIAVGYEARNYGVKRSMR 69
RIIA +D+DCFYVQVEQR QP L G P AVVQ++ +GGGL+A+ YEAR +GVKR M
Sbjct: 5 RIIALIDMDCFYVQVEQRLQPHLYGKPVAVVQHSSGNNRGGGLLAISYEARPFGVKRGMF 64
Query: 70 GDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYL 124
++AK +CP + L VPV KAD++ YR+A +EV +L ERAS+DE YL
Sbjct: 65 PEQAKALCPGLTLCYVPVGEHVDKADITRYRDASAEVFKVLHEFNSQIIVERASVDEAYL 124
Query: 125 DLTDAAEAMLAETPPESLDEVDEEAL----KSHIL-GLESKDGN------DSKATVKEWL 173
DL+ E + T P S+ +A+ +H+ G + +G D ++ ++
Sbjct: 125 DLSALVEHVFETTDP-SIRYGKSDAMDLFPTTHVANGTDVNEGKIPDWKYDRIGSLHSFI 183
Query: 174 ---CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 230
C+ D++ KL+ G +V ++R + + T F CSAGI +KM+AKL +KP QQ
Sbjct: 184 SETCKTKDDYKLKLI-IGADLVEQIRRNIKESTAFNCSAGIGSSKMIAKLVCSRHKPGQQ 242
Query: 231 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 290
T V ++ + + PI +++ LGGKLG +L + + T+G+L K S L E Y
Sbjct: 243 TVVFNEAIPKVFEYTPINEVRNLGGKLGRALMEKFDIKTMGELSKISMSHLSE-YFPAQA 301
Query: 291 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
W++NIA GI E+V AR S K+FPG ALKT V+ WL L +EL +RL D
Sbjct: 302 KWVYNIAHGIDEEKVTARDKQSSVAVSKNFPGVNALKTDVDVKFWLEGLVKELVKRLIDD 361
Query: 351 LEQNKRIAHTLTL 363
N R A TL +
Sbjct: 362 QIANIRTASTLHI 374
>gi|298709408|emb|CBJ49221.1| translesion synthesis DNA polymerase eta splice variant [Ectocarpus
siliculosus]
Length = 838
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 219/438 (50%), Gaps = 78/438 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN-----------------EWKGGGLIA 54
R+IAH+D+D FY Q+EQ + L G P VVQY E +IA
Sbjct: 44 RVIAHIDMDAFYAQIEQLRDAALTGRPVVVVQYPTSNHDIKDMAPDDNRVVEGSASSIIA 103
Query: 55 VGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-- 112
V YEAR +GVKR M+ +A++VCP++ LVQVP GKAD+S YR+AG VV++L R G
Sbjct: 104 VSYEARPFGVKRGMKAGDARKVCPELSLVQVPTRNGKADISFYRHAGERVVAVLERAGGA 163
Query: 113 --RCERASIDEVYLDLTDAAEAMLA---------------------------------ET 137
E+ASIDEVY+D+T AA A+L+ +
Sbjct: 164 LTTVEKASIDEVYVDVTRAAHALLSSLGSHNSESGGDQPQQHQQQDEDGKGASAEEGSKA 223
Query: 138 PPESLDEVDEEALK--------------------SHILGLESKDGNDSK--ATVKEWLCR 175
PP + D E K +H+ GL + + A W R
Sbjct: 224 PPAASPMEDGEVSKKRWEDIGEGGWTAVLSATATTHVAGLSDDHASKEQQLADGVSWWAR 283
Query: 176 C-DADHRDK-LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
+A RD+ LL+CG +V+ LR V E ++C+AG+AHNK+LAKL S M+KP QT +
Sbjct: 284 TQEAFTRDQELLSCGAAVVSRLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVL 343
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
P V+ + +LP+++++ GGK G + +LGV+T G++ +LQ G G
Sbjct: 344 PLDKVEVVFHTLPVERVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRA 403
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
W + I + V AR PKS G K+FPG L + + ++ WL++L +EL RL E
Sbjct: 404 WEKSNAICRDPVNARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELISRLVEQQEG 463
Query: 354 NKRIAHTLTLHASAFKSS 371
+ LT+ +A + +
Sbjct: 464 EGQTPSKLTVSFAALQQA 481
>gi|403261356|ref|XP_003923089.1| PREDICTED: DNA polymerase eta isoform 3 [Saimiri boliviensis
boliviensis]
Length = 648
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 148/394 (37%), Positives = 214/394 (54%), Gaps = 24/394 (6%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 128 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 180
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 61 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTDN 120
Query: 181 R---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 121 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 180
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
V L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 181 VPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMC 240
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 241 RGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRV 300
Query: 358 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKT 416
A L + D R + C L RY K+ D F++ + + G++T
Sbjct: 301 ATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQT 351
Query: 417 QGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+ S +T L + A+K +C+ + F
Sbjct: 352 EWSP----PLTMLFLCATKFSASAPSSCTDITSF 381
>gi|194377454|dbj|BAG57675.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 193/350 (55%), Gaps = 23/350 (6%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 128 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRC 176
A + L + P S D + ++I GL + KE WL
Sbjct: 61 SAVQERLQKLQGQPISADLLPS----TYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 116
Query: 177 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 117 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 176
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 177 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 236
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 237 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 296
Query: 354 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
N R+A L + D R + C L RY K+ D F + +
Sbjct: 297 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|397526775|ref|XP_003833292.1| PREDICTED: DNA polymerase eta [Pan paniscus]
Length = 651
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 193/350 (55%), Gaps = 23/350 (6%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 128 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRC 176
A + L + P S D + ++I GL + KE WL
Sbjct: 61 SAVQERLQKLQGQPISADLLPS----TYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 116
Query: 177 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 117 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 176
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 177 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 236
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 237 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 296
Query: 354 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
N R+A L + D R + C L RY K+ D F + +
Sbjct: 297 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|221045690|dbj|BAH14522.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 193/350 (55%), Gaps = 23/350 (6%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRLAVIERASIDEAYVDLT 60
Query: 128 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRC 176
A + L + P S D + ++I GL + KE WL
Sbjct: 61 SAVQERLQKLQGQPISADLLPS----TYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 116
Query: 177 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 117 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 176
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 177 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 236
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 237 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 296
Query: 354 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
N R+A L + D R + C L RY K+ D F + +
Sbjct: 297 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|170581390|ref|XP_001895662.1| ImpB/MucB/SamB family protein [Brugia malayi]
gi|158597305|gb|EDP35487.1| ImpB/MucB/SamB family protein [Brugia malayi]
Length = 500
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 192/359 (53%), Gaps = 48/359 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEW--KGGGLIAVGYEARNYGVKRSMR 69
RIIA +D+DCFYVQVEQR QP L G P AVVQ++ +GGGL+A+ YEAR +G+KR M
Sbjct: 5 RIIALIDMDCFYVQVEQRLQPHLYGKPVAVVQHSSGNNRGGGLLAISYEARPFGIKRGMF 64
Query: 70 GDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILAR---KGRCERASIDEVYL 124
++AK +C ++ L VPV KAD++ YR+A +EV +L + ERAS+DE YL
Sbjct: 65 PEQAKTLCSELTLCYVPVGEHVDKADITRYRDASAEVFKVLHEFNSRIIVERASVDEAYL 124
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT E + T P + L+
Sbjct: 125 DLTALVEHIYETTDPS--------------IKLK-------------------------- 144
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G +V ++R + K T F CSAGI +KM+AKL +KP QQT V ++ + +
Sbjct: 145 LIIGADLVEQIRRNIKKSTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVFEY 204
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
PI +++ LGGKLG +L + + T+G+L + S L E Y W++NIA GI E+
Sbjct: 205 TPINEVRNLGGKLGRALMEKFNIKTMGELSEISMSHLSE-YFPAQAKWIYNIAHGIDDEK 263
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V AR S K+FPG ALKT V+ WL L +EL +RL D N R A TL +
Sbjct: 264 VTARDKQSSVAVSKNFPGANALKTDVDVKFWLEGLVKELVKRLIDDQIANIRTASTLHI 322
>gi|115534089|ref|NP_497480.2| Protein POLH-1 [Caenorhabditis elegans]
gi|84570637|dbj|BAE72703.1| DNA polymerase eta [Caenorhabditis elegans]
gi|373218637|emb|CCD62153.1| Protein POLH-1 [Caenorhabditis elegans]
Length = 584
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 207/364 (56%), Gaps = 14/364 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN-EWKGGGLIAVGYEARNYGVKRSMRG 70
R+I+ +D+DCFY QVEQR P L G P VVQ++ + GG++AV YEAR +GVKR M
Sbjct: 3 RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTV 62
Query: 71 DEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYLD 125
EAK CPQI + VP+ KAD+ YR+A +EV +L E+AS+DE +LD
Sbjct: 63 AEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFLD 122
Query: 126 LTDAAEAMLAETPP-ESLDEVDEEALK----SHILGLESKDGNDS--KATVKEWLCRCDA 178
L+ L E E L+E + A+ +H+ E N+ + + E++
Sbjct: 123 LSAYTNQKLQELRENEGLEEFLQAAITYLPTTHLATGEDVKENEHLREDVLLEYIENARN 182
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
+ LL + V ++R Q+ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V
Sbjct: 183 CTENLLLLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPWFYV 242
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
+ +L PI ++ GGK+G +Q L +T +G+LL+ +L E++ N +L ++A
Sbjct: 243 REILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFP-NQHEYLRSVAE 301
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G E V+ R S K+FPG ++++V ++ WL+ L +EL++RL +D +NKR A
Sbjct: 302 GHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQAENKRTA 361
Query: 359 HTLT 362
L
Sbjct: 362 ENLV 365
>gi|410931299|ref|XP_003979033.1| PREDICTED: DNA polymerase eta-like, partial [Takifugu rubripes]
Length = 245
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 160/253 (63%), Gaps = 20/253 (7%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCFYVQVEQR P L+ P V QY WKGGG+IAV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALKNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP +++ +V + GKADL+ YR A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTFYREASVEVIEVMSRFAVIERASIDEAYMDLTAAVQ 126
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC------DADHRDKLL 185
+ L +++ + +H+L + G V++WL + + L
Sbjct: 127 --------QRLKNLNDSPIDAHLLKEQRSRG------VQQWLAMLPLPAVGEQSSAELQL 172
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV+ L SL
Sbjct: 173 TVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDSVRDLFSSL 232
Query: 246 PIKKMKQLGGKLG 258
P+ K++ LGGKLG
Sbjct: 233 PVGKIRNLGGKLG 245
>gi|308480033|ref|XP_003102224.1| CRE-POLH-1 protein [Caenorhabditis remanei]
gi|308262150|gb|EFP06103.1| CRE-POLH-1 protein [Caenorhabditis remanei]
Length = 602
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 201/364 (55%), Gaps = 14/364 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN-EWKGGGLIAVGYEARNYGVKRSMRG 70
R+I+ +D+DCFY QVEQR QP L G P VVQ++ + GG++AV YEAR +GVKR M
Sbjct: 3 RVISLIDMDCFYAQVEQRDQPSLWGKPVIVVQHSRQGVEGGILAVSYEARPFGVKRGMTV 62
Query: 71 DEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYLD 125
+AK+ CPQI + VP+ KAD+ YR+A +EV +L E+AS+DE +LD
Sbjct: 63 SDAKQKCPQITICHVPIGEYADKADIQKYRDASAEVFRVLNNFDSSIIVEKASVDEAFLD 122
Query: 126 LTDAAEAMLAETPPE-SLDEVDEEALK----SHILGLESKDGNDS--KATVKEWLCRCDA 178
L+ L E +L+E E AL +H+ + ND + + E++
Sbjct: 123 LSAYTAQKLDEMRENGTLEEFVETALSQLPSTHLANGQDFAENDHLREQFLSEFIQNSTY 182
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
+ LL V +R ++ ET+F CSAG+ +NKM+AKL +KP QQT +P+ V
Sbjct: 183 SDENLLLLIAACTVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWKYV 242
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
+ +L PI ++ GGK G +Q L ++ +G++L+ L E++ + +L +A
Sbjct: 243 REILRLTPIGDVRGFGGKFGNRVQEMLNISLMGEILEIEWHLLIEAFP-DQHEYLRAVAE 301
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G+ E V+ R S K+FPG A++T ++ W+ L +EL++RL D +NKR A
Sbjct: 302 GLDDEPVRPRRESSSIAVSKNFPGKSAIRTTREMRKWVEGLVKELAKRLVVDQVENKRTA 361
Query: 359 HTLT 362
L
Sbjct: 362 ENLV 365
>gi|341901232|gb|EGT57167.1| CBN-POLH-1 protein [Caenorhabditis brenneri]
Length = 587
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 203/362 (56%), Gaps = 12/362 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN-EWKGGGLIAVGYEARNYGVKRSMRG 70
R+I+ +D+DCFY QVEQR P L P VVQ++ + GG++AV YEAR +GVKR M
Sbjct: 3 RVISLIDMDCFYAQVEQRDNPALWDQPVIVVQHSRQGVEGGILAVSYEARPFGVKRGMSV 62
Query: 71 DEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYLD 125
+AK CPQI + VP+ KAD+ YR+A +EV +L E+AS+DE +LD
Sbjct: 63 ADAKLKCPQINVCHVPIGEYADKADIQKYRDASAEVFRVLNNFDTSIIVEKASVDEAFLD 122
Query: 126 LTDAAEAMLAETPPE-SLDEVDE-EALKSHILGL-ESKDGNDS--KATVKEWLCRCDADH 180
LT L E +L+E E L + L E ND + + +++
Sbjct: 123 LTTYTNERLEELRENGNLEEFTAIEHLPTTFLATGEDVKENDHLREQMLTDFITGSLHST 182
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+ LL V +R ++ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+
Sbjct: 183 ENILLLIAACTVEAIRDRIHEETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWVYVRE 242
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
+L + PI ++ GGKLG +Q L +T +G++L+ L ES+ + +L IA+G+
Sbjct: 243 ILRTTPIGDVRGFGGKLGNRVQELLNITLMGEILEIDYSLLVESFP-DQHEYLIAIAQGM 301
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
E V+ R S K+FPG A++T+ ++ WL+ L +EL++RL +D +NKR A
Sbjct: 302 CDEPVRPRKESSSIAVSKNFPGKLAIRTIQELRKWLDGLTKELAKRLWTDQNENKRTAEN 361
Query: 361 LT 362
L
Sbjct: 362 LV 363
>gi|301626020|ref|XP_002942198.1| PREDICTED: DNA polymerase eta-like [Xenopus (Silurana) tropicalis]
Length = 300
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 166/280 (59%), Gaps = 15/280 (5%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M GD+AK++C ++L +V A GKADL++YR A EV+ +++R ERASIDE Y+DLT
Sbjct: 1 MFGDDAKKLCADLQLARVREAHGKADLTNYREASVEVMEVMSRFAVVERASIDEAYIDLT 60
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRC-- 176
D+ + L E + + E LK+ + + D KE WL
Sbjct: 61 DSVQKRLREM---GVAPIPGELLKTTYVQGYPQCEPDCDTLSKEELRQRGLEQWLESLPI 117
Query: 177 -DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 235
D D LA G +IV E+R V KET F CSAGIAHNK+LAKLA G+NKP +QT +
Sbjct: 118 GDPRSPDLKLAVGAIIVEEMRAAVEKETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQ 177
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
SV GL LPI K++ LGGKLGTS++ L V +G L +F+E LQ +G TG+WL++
Sbjct: 178 GSVPGLFSELPISKVRHLGGKLGTSIRESLSVEYIGQLTQFTEQHLQNHFGEKTGSWLYS 237
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 335
+ RGI E V+ R LPKS G K FPG AL T VQ+W
Sbjct: 238 LCRGIEDEPVKPRQLPKSIGCSKIFPGKTALSTQEQVQYW 277
>gi|297290923|ref|XP_002803805.1| PREDICTED: DNA polymerase eta-like [Macaca mulatta]
Length = 730
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 205/404 (50%), Gaps = 50/404 (12%)
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK 111
+IAV YEAR +GV RSM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R
Sbjct: 111 IIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRF 170
Query: 112 GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE 171
ERASIDE Y+DLT + + E L ++ + + + +L +G T E
Sbjct: 171 AVIERASIDEAYVDLTSSVQ--------ERLQKLQGQPISADLLPSTYIEGLPQGPTTAE 222
Query: 172 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 231
E +V K F C ++LAKLA G+NKP +QT
Sbjct: 223 ----------------------ETVQKVTKFLHFAC------FQVLAKLACGLNKPNRQT 254
Query: 232 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 291
V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+
Sbjct: 255 LVSHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGS 314
Query: 292 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 351
WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 315 WLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDR 374
Query: 352 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLG 410
N R+A L + D R + C L RY K+ D F + +
Sbjct: 375 NDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CN 425
Query: 411 SFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+ G++T+ S +T L + A+K +C+ + F D
Sbjct: 426 TSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 465
>gi|268571285|ref|XP_002640994.1| C. briggsae CBR-POLH-1 protein [Caenorhabditis briggsae]
Length = 608
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 206/366 (56%), Gaps = 18/366 (4%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN-EWKGGGLIAVGYEARNYGVKRSMRG 70
R+I+ +D+DCFY QVEQR +P+L G P VVQ++ + GG++AV YEAR +GVKR M
Sbjct: 3 RVISLIDMDCFYAQVEQRDKPELWGQPVIVVQHSRQGVEGGILAVSYEARPFGVKRGMSV 62
Query: 71 DEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYLD 125
+AK CP + + VP+ KAD+ YR+A +EV +L E+AS+DE +LD
Sbjct: 63 ADAKIKCPHLNICHVPIGEYADKADIQKYRDASAEVFRVLNNFDSTIIVEKASVDEAFLD 122
Query: 126 LTDAAEAMLAETPPE-SLDEVDEEAL----KSHILGLESKDGNDSKATVKEWLCRCDADH 180
LT L E L+E+ + +L +H+ E D +++ +E+L
Sbjct: 123 LTAYTNQKLEEIRENGQLEEIVKTSLDQLPSTHLANGE--DVKENEHLREEFLSDFIESS 180
Query: 181 RDK----LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
R+ LL + V +R ++ ET+F CSAG+ +NKM+AKL +KP QQT +P+
Sbjct: 181 RNSTENLLLLIAAITVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWR 240
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+ + +L + PI ++ GGK+G +Q L +T +G++L+ L E++ + +L +
Sbjct: 241 NCREILRTTPIGDVRGFGGKMGNRIQEMLNITLMGEILELDIALLIETFP-DQHEYLRAV 299
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
A G+ E V+ R S K+FPG A++T ++ W+ L +EL++RL +D +NKR
Sbjct: 300 AEGLDDEPVRPRKESSSIAVSKNFPGKMAIRTTGELKKWVGGLVKELAKRLGTDQAENKR 359
Query: 357 IAHTLT 362
A L
Sbjct: 360 TAENLV 365
>gi|344259088|gb|EGW15192.1| DNA polymerase eta [Cricetulus griseus]
Length = 633
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 214/401 (53%), Gaps = 39/401 (9%)
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAYIDLT 60
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--------------WL 173
A + + L+++ + + + +L +G TV+E WL
Sbjct: 61 SAVQ--------DRLEKLQGQPISADLLPTTYIEGLPRGPTVEETVQKEEIRKQGLLQWL 112
Query: 174 CRC---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 230
DA D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +Q
Sbjct: 113 GSLQIDDATSPDLQLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQ 172
Query: 231 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 290
T V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G
Sbjct: 173 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNG 232
Query: 291 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
+WL+ + RGI + V+ R LPKS G K+FPG AL T VQ WL QL EL ERL D
Sbjct: 233 SWLYAMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKD 292
Query: 351 LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 409
N R+A L + D R + C L +Y K+ +D F A +R
Sbjct: 293 RNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTQYDAHKMSQDAF----AAIRN-C 343
Query: 410 GSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+ G++T+ S +T L + A+K +C+ + F
Sbjct: 344 NTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITVF 380
>gi|298710336|emb|CBJ31954.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 644
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 192/376 (51%), Gaps = 41/376 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAV-VQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+I H DLDCFY QVE + G+PT+V + +W G LIAV YEAR GVKR R
Sbjct: 10 RVIVHADLDCFYCQVEHVRL----GIPTSVPLAVQQWDG--LIAVNYEARKSGVKRGDRT 63
Query: 71 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSIL-ARKGR 113
AK+ CPQI LV V K L YR A +++I A R
Sbjct: 64 TAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERYRTASFAIMAIFQAHCRR 123
Query: 114 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWL 173
ERASIDE YLDLT+ A + E + +V + S L+ G+ T
Sbjct: 124 VERASIDEAYLDLTEEAAKLCQEVEAGNARDVAD----SPETDLQGTAGHRVDPT----- 174
Query: 174 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
+ D+ L G + +R+ V +E FT SAGIA NK+LAKLAS +NKP +QT V
Sbjct: 175 -----NAFDRALLAGARLTAAMRLAVEQELGFTVSAGIASNKVLAKLASSINKPNKQTVV 229
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
P + +LD++P++ ++ LGGKLG ++ + DL +FS+ L ++G TG WL
Sbjct: 230 PAGASSDMLDTVPLRSVRGLGGKLGETVVSWSKAEKASDLKRFSQQDLVGNFGTKTGEWL 289
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
W RG+ E V L PKS KSF ++ SV +W+ LC ELS+R+ D E
Sbjct: 290 WRACRGMDDEPVAPNLKPKSLSVCKSFT---PVRDEESVLNWMRLLCTELSQRIAVDREA 346
Query: 354 NKRIAHTLTLHASAFK 369
R A LTL + K
Sbjct: 347 WSRRATKLTLQMISLK 362
>gi|414884035|tpg|DAA60049.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 378
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL CG +IV
Sbjct: 1 MLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLPCGAIIV 59
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 60 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 119
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 290
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTG
Sbjct: 120 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTG 157
>gi|193783756|dbj|BAG53738.1| unnamed protein product [Homo sapiens]
Length = 617
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 173/324 (53%), Gaps = 23/324 (7%)
Query: 94 LSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLA--ETPPESLDEVDEEALK 151
L YR A EV+ I++R ERASIDE Y+DLT A + L + P S D +
Sbjct: 5 LLRYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPS---- 60
Query: 152 SHILGLESKDGNDSKATVKE---------WLCRCDADHR---DKLLACGVLIVTELRMQV 199
++I GL + KE WL D+ D L G +IV E+R +
Sbjct: 61 TYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAI 120
Query: 200 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 259
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 121 ERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGA 180
Query: 260 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 319
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+
Sbjct: 181 SVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKN 240
Query: 320 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 379
FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 241 FPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSS 296
Query: 380 PSKSCPL-RYGTAKIQEDTFNLFQ 402
+ C L RY K+ D F + +
Sbjct: 297 LRRCCALTRYDAHKMSHDAFTVIK 320
>gi|391347259|ref|XP_003747882.1| PREDICTED: DNA polymerase eta-like [Metaseiulus occidentalis]
Length = 270
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 155/264 (58%), Gaps = 16/264 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQ-YNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IA +D+DCFYVQVE+R QP+ +G P VVQ GG IAV YEAR G+KR MR
Sbjct: 10 RCIALIDMDCFYVQVEERLQPQHKGKPGVVVQCTGSGVEGGCIAVNYEARAKGIKRGMRP 69
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDA 129
++A+ + + VP R KADLS YR AG+EV+ + G ERASIDE Y+DLT
Sbjct: 70 NQARALSSDCIIYHVPEVRQKADLSRYRQAGAEVLKVFCSFGAVVERASIDEAYIDLTGL 129
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
L P +L E + LE D W D D LA G
Sbjct: 130 VANKLTCVPTAALGNASIEGYEDATSFLEQVD----------W----TEDGGDAYLARGA 175
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I+ E+R +VL+ET FTCSAGI+HNK++AKLA+G++KP + T VP SSV L ++PI K
Sbjct: 176 AIMMEMRAKVLQETGFTCSAGISHNKIVAKLAAGLHKPNRLTVVPHSSVALLFTTVPIGK 235
Query: 250 MKQLGGKLGTSLQNELGVTTVGDL 273
++ LGGKLG ++ +L V T+ +L
Sbjct: 236 VRNLGGKLGENITKDLNVQTMAEL 259
>gi|312373689|gb|EFR21388.1| hypothetical protein AND_17125 [Anopheles darlingi]
Length = 281
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 159/272 (58%), Gaps = 23/272 (8%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCFY QVE++ P+++G P AVVQYN W+ AV Y AR GV R MRGDEAK+ CP
Sbjct: 1 MDCFYCQVEEKLNPEIKGKPIAVVQYNPWQ-----AVNYPARGKGVTRHMRGDEAKQHCP 55
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAAEAMLAET 137
+IEL QVP RGKADL+ YR AG EV +L + ERASIDE YLD+T+ + +
Sbjct: 56 EIELPQVPNVRGKADLTRYREAGKEVAEVLKSFTPLLERASIDEAYLDITERVLNRIRDM 115
Query: 138 PPESLDEVDEEALKSHILGLES-------------KDGNDSKATVKEWLCRCDADHRDKL 184
+ ++ + +G +S +G + T ++ + D
Sbjct: 116 NEGRFQLLPDKLANTFAVGYDSIGDFVKKLSNTFDNNGTSEQGTPEQL----EYKKSDIK 171
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G IV E+R V ++T + CSAG+AHNK+LAKL +G +KP +QT +P S+ L ++
Sbjct: 172 LLVGASIVNEIRAAVKEKTGYECSAGVAHNKILAKLTAGFHKPNKQTILPIESIAKLYET 231
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276
LP+KK+K LGGKLG + L + + +L++F
Sbjct: 232 LPVKKVKGLGGKLGDQVCELLKIKFMSELVQF 263
>gi|209489406|gb|ACI49169.1| hypothetical protein Csp3_JD01.001 [Caenorhabditis angaria]
Length = 975
Score = 198 bits (504), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 172/312 (55%), Gaps = 27/312 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN-EWKGGGLIAVGYEARNYGVKRSMRG 70
RII +D+DCFY QVEQR QP L G P VVQ++ + GG++AV YEAR +G+KR M
Sbjct: 673 RIIGLIDMDCFYAQVEQRDQPDLWGKPVIVVQHSRQGVLGGILAVSYEARTFGIKRGMTV 732
Query: 71 DEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYLD 125
EAK C + + VP+ KAD+ YR+A +EV +L E+AS+DE +LD
Sbjct: 733 TEAKAKCADLNVCHVPIGEYADKADIQKYRDASAEVFEVLNNIDSNIIVEKASVDEAFLD 792
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILG----LESKDGNDSKATVKEWLCRC----- 176
L+ E +L EV++E S I+G DGND K T +E + R
Sbjct: 793 LSIYIEKIL---------EVEQETELSDIIGALPTTHIADGNDKKETEEERIDRIAKFYE 843
Query: 177 --DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
+D K L + + ++R ++ ++T+F CSAGI +NKM+AKL +KP QQT +P
Sbjct: 844 ETKSDENQKKLMIAAIAIEDIRAKIREKTQFYCSAGIGNNKMMAKLVCARHKPRQQTIIP 903
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
F V+ +L PI ++ GGK+GT + L + T+G++L +++ E++ +L
Sbjct: 904 FQYVRDILKVTPIGDIRGFGGKMGTKIMEMLKIKTMGEILTIEFERVVEAFP-EQHEYLK 962
Query: 295 NIARGISGEEVQ 306
+A G E V
Sbjct: 963 CVAEGYDDEPVH 974
>gi|167536588|ref|XP_001749965.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771475|gb|EDQ85140.1| predicted protein [Monosiga brevicollis MX1]
Length = 722
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/453 (31%), Positives = 215/453 (47%), Gaps = 68/453 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H DLD FY QVE+++ P+L+ P AV Q++ GLIA+ Y+ + G+ R +
Sbjct: 5 RVIIHADLDAFYTQVERQRHPELKDRPLAVQQWS-----GLIAIDYKCKAAGIGRHSTVE 59
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EA+++ P + V V V KA L YR A ++++++ + G ERASIDE Y D+T A+
Sbjct: 60 EARKILPDLACVHVDVINQKASLEPYRQASRDIMAVMEQYGTFERASIDEAYFDVTQEAQ 119
Query: 132 AMLAETPPESL-------------------DEVDEEALK-----SHILGLESKDGNDSKA 167
A+TP L D E+ L+ +H++G DG D
Sbjct: 120 QREAQTPATQLCRHYADLTLLQRGAVELRADLTLEDWLRVAMASTHVMGYAPDDGPDDHL 179
Query: 168 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
WL + + D LL G +I E+R +V +ET + CSAGIAHNK+ AK+ SG NKP
Sbjct: 180 GFG-WLPKSE---EDALLFHGAMIAAEIRFRVFEETGYVCSAGIAHNKLFAKMGSGFNKP 235
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
+QQT P +S ++ +Q G +L V D L S +L+ +
Sbjct: 236 SQQTLYPRASSGD-------QQYRQAGERL-----------LVADCLGLSLAELRTEFSS 277
Query: 288 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
T WL + RG V ++ P+S KS G +A + + V++W+N LC L+ R+
Sbjct: 278 ETAAWLHGLLRGHDSRAVASKGPPRSLLEAKSITG-QATQLIV-VEYWINNLCHGLARRI 335
Query: 348 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC-PLRYGTAKIQEDTFNLFQAGLR 406
D ++ R L FK +D S+SC P+ + I D QA
Sbjct: 336 LDDARRHNRWPKNYVLQ---FKRR-ADRTYFGASRSCGPVPH----ITRDMVRHAQANPE 387
Query: 407 EFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 439
E + Q G ++ ++ A K VP+
Sbjct: 388 EG------RVQADITEGRELSGVAAGARKDVPL 414
>gi|326429234|gb|EGD74804.1| hypothetical protein PTSG_12528 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 185/390 (47%), Gaps = 65/390 (16%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVDLD FY QVE + P+L G P AV Q W+G LIA+ Y + GV R M +
Sbjct: 19 RVIMHVDLDAFYAQVEHHRHPELDGKPLAVQQ---WRG--LIAIDYLCKAAGVTRFMNME 73
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EAK VCP I+ V V + GKA L YR A ++++I + G CE+A +DE YLD+T A
Sbjct: 74 EAKRVCPDIQFVHVDIVHGKASLEPYRRASRDIMAIFEQFGVCEKAGMDEAYLDVTKEA- 132
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC---- 187
E P S+ ++ +++K + T K + C+ A H D LL
Sbjct: 133 VRRREQCPTSIQQL-----------MQAKYIVPGEFTFKVF-CKEGATHDDLLLGSLASS 180
Query: 188 --------------------------GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 221
G + ELR+ V + + SAGI+H+K++AK+
Sbjct: 181 RVIGFAHGLLGRGWKPTSEDDWLLVEGAAVAAELRVAVYERLGYVVSAGISHSKLMAKVG 240
Query: 222 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT----SLQNELG----------- 266
SG NKP QT +P + + +L LPI ++ QL GK+G +LQ G
Sbjct: 241 SGHNKPGHQTIIPHYAARPMLAKLPISRVPQLHGKMGRAVKLALQESRGEHWRYQALSSR 300
Query: 267 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 326
V D L + + L G TW+ RG V + P+S KS +A+
Sbjct: 301 EVLVEDCLGLTLEYLASKLGREAATWVHAFLRGHDTRAVHPKGPPRSLLEAKST--SKAM 358
Query: 327 KTVASVQHWLNQLCEELSERLCSDLEQNKR 356
T +++HW+ LC L+ER+ D +N R
Sbjct: 359 TTYPALRHWVGNLCFGLAERILDDHARNNR 388
>gi|326915374|ref|XP_003203993.1| PREDICTED: DNA polymerase eta-like [Meleagris gallopavo]
Length = 554
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 159/295 (53%), Gaps = 26/295 (8%)
Query: 169 VKEWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 225
++EWL D+ D L+ G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+N
Sbjct: 30 LQEWLASLSFDNLNCPDLQLSMGAVIVEEMRVAVEKATGFRCSAGISHNKMLAKLACGLN 89
Query: 226 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 285
KP +QT V SV L +P+ ++ LGGKLG ++ + LGV +G + +FSE +LQ +
Sbjct: 90 KPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGQVTQFSEMELQTHF 149
Query: 286 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 345
G TG+WL+++ RGI E V+ R LP+S G K+FPG AL T VQHWL QL EL
Sbjct: 150 GDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELES 209
Query: 346 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAG 404
RL D QN R+A L + D+R S+ C + RY KI D F L Q
Sbjct: 210 RLIKDRSQNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDAQKIFSDAFALIQ-- 260
Query: 405 LREFLGSFGVKTQGSHYSGWRITALSV--SASKI-VPVL--SGTCSIMKYFNGPD 454
G+H + W +SV +ASK P +G S + PD
Sbjct: 261 --------NCNMAGTHQAAWSPPLISVHLAASKFSAPTFLSAGIASFLTSDTSPD 307
>gi|256075427|ref|XP_002574021.1| DNA polymerase eta [Schistosoma mansoni]
gi|353229352|emb|CCD75523.1| putative DNA polymerase eta [Schistosoma mansoni]
Length = 400
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 178/318 (55%), Gaps = 7/318 (2%)
Query: 53 IAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-K 111
+AV YEAR G+KR M DE + P++ + +VP RGKA+L+ YR+A SEV+ ++
Sbjct: 5 LAVSYEARALGIKRGMFSDEIRVQHPEVIIFKVPEKRGKAELTRYRDASSEVIQCISEFT 64
Query: 112 GRCERASIDEVYLDLTDAAE--AMLAETP-PESLDEVDEEALKSHILGLESKDGNDSKAT 168
ERASIDE Y+DLT + + + P PES V+ + + LE + N +
Sbjct: 65 SDIERASIDEAYVDLTVLIQDHNLSSLHPNPESYVLVNSDIAEES--KLELTETNCVSLS 122
Query: 169 VKEWLCRCDADHRD-KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
+W+ D++ + + LA +V +R V +T F CSAGI NK +AKLA +NKP
Sbjct: 123 GVDWIKLLDSNFAEGRRLAVASELVYRIRQAVFTKTGFKCSAGIGPNKSIAKLACSLNKP 182
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
+QT +P S+ LL++ I K++ LGGKLG+++ +L + T+G L L + +G
Sbjct: 183 NKQTIIPQESIPILLENTHINKIRNLGGKLGSTVVKKLKIETLGQLSSIPLSVLTKEFGE 242
Query: 288 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
T WL +++ GI E V R LPKS G K+F G L + ++ WL L EE+ ERL
Sbjct: 243 KTSKWLHDLSHGIDHEVVTTRSLPKSVGCSKNFLGRATLTSSEQIKRWLLCLAEEIFERL 302
Query: 348 CSDLEQNKRIAHTLTLHA 365
D Q++R L L+A
Sbjct: 303 DVDYHQHQRYPTRLILYA 320
>gi|340975581|gb|EGS22696.1| DNA polymerase eta-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 507
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 200/432 (46%), Gaps = 45/432 (10%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R++AH+DLDCFY QVE + P AV Q+ GLIAV Y AR+YG+ R
Sbjct: 57 SSPLRVVAHIDLDCFYAQVEMVRLGIAEDTPFAVQQWQ-----GLIAVNYPARSYGIGRH 111
Query: 68 MRGDEAKEVCPQIELVQVP----------------VARGKADLSSYRNAGSEVVSILARK 111
EAK++CP++ V VA K L YR+ +++ ++
Sbjct: 112 CTITEAKKLCPKLITQHVATWREADGKWAYREDPQVATDKVCLDPYRSESRKILVLIKEL 171
Query: 112 -----GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK 166
R E+ASIDEV+LDL+ A+L E PE L L S +L L D +
Sbjct: 172 LPHGLQRVEKASIDEVFLDLSAHVHAILLERFPELLSPQPHRDL-SELLPLPPISDLDWQ 230
Query: 167 ATV--------KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
A + L D D D IV LR + ++ +TCSAGIA NK+L+
Sbjct: 231 ADTLVDAGDSDNKTLAILDPDWDDVAFYVASGIVRHLRSSIKEKLGYTCSAGIARNKLLS 290
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL S KP QQT + +V L + K++ LGGKLG + ++ DLL
Sbjct: 291 KLGSSYKKPNQQTVIRNRAVAHFLSGVKFTKIRNLGGKLGEQVSRAFNTDSIPDLLTVPI 350
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
++++ G T WL+N RG+ EV R+ KS S KSF L T+ WL
Sbjct: 351 EQMKVKLGDETAIWLYNTLRGVDMSEVNPRIQIKSMLSAKSFRP--TLTTIDQAVRWLRI 408
Query: 339 LCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 397
++ RL + + +++R T+ LH ++ +R S+SCP+ G A
Sbjct: 409 FAADIFSRLVEEGVLEHRRHPKTINLH---YRPLGGQAR----SRSCPIPQGRALDDGTL 461
Query: 398 FNLFQAGLREFL 409
F+L + L +
Sbjct: 462 FDLAKTLLTHIV 473
>gi|358060048|dbj|GAA94107.1| hypothetical protein E5Q_00754 [Mixia osmundae IAM 14324]
Length = 628
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 212/469 (45%), Gaps = 54/469 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH D+D Y Q E + LP AV Q+ GLIA+ Y AR +G+ R
Sbjct: 39 RVIAHCDIDAAYSQFEIVRLGLDPSLPVAVQQWQ-----GLIAINYPARKFGITRHETPI 93
Query: 72 EAKEVCPQIELVQV-------PVA---------RGKADLSSYRNAGSEVVSILARKGRC- 114
EAK+ CP + LV V PV+ K L YR +++ I C
Sbjct: 94 EAKKKCPHLILVHVATYMDSQPVSGYYDNPRPETHKVSLDPYRRESQKILKIFG--DLCP 151
Query: 115 --ERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALK----SHILGLESKDG 162
E+ASIDE +LD T ++ E PP++LDE S + L D
Sbjct: 152 LIEKASIDEAFLDFTAPVRQLMLERYPILAQPPDNLDEPLPPPPTTLPWSELGNLIPVDP 211
Query: 163 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
+ T E + +D LA G ++ + R +V + +TCSAGIA NKML+KL S
Sbjct: 212 DAPPETDDEPIT-----WQDVALALGAEMMEKCRKEVYTQLGYTCSAGIAKNKMLSKLCS 266
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282
KP QT + ++V L L +K++ LGGKLG SL NE +TVGDL S +LQ
Sbjct: 267 AWKKPNAQTVLRDTAVHNFLKPLKFQKIRFLGGKLGDSLANEYESSTVGDLWSVSLQELQ 326
Query: 283 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
G +G W W I RGI EVQ + KS S K+F A+ A +WL E
Sbjct: 327 RKLGNESGMWCWEIIRGIDLTEVQPKAATKSMLSSKNFKP--AINKWADGAYWLRVSATE 384
Query: 343 LSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 401
L+ RL E I T+TL+ F+ + SR SK C Y + F +
Sbjct: 385 LAARLNEQRESVPGIWPKTITLN---FRDINYVSR----SKQCAFPYSNNLSADYVFKIT 437
Query: 402 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+ L+EF GS T+L ++ + + V SG I +F
Sbjct: 438 ERLLKEFQNEGSKPDDGSMTPA---TSLGLAFNGLERVASGQAGIQDFF 483
>gi|328768045|gb|EGF78092.1| hypothetical protein BATDEDRAFT_26797 [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 199/413 (48%), Gaps = 54/413 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+ H+DLD FY QVEQ + +P AV Q+N G+IA+ Y AR G+ R
Sbjct: 17 RVFIHLDLDAFYAQVEQVRLGLPPTVPLAVQQWN-----GMIAINYAAREMGIHRFGSIK 71
Query: 72 EAKEVCPQIELVQV-------------PVARG---------------KADLSSYRNAGSE 103
+AK CP++ LV V A G K L YR A ++
Sbjct: 72 DAKRTCPELLLVHVWWQLMCFNVNTVATYADGDTEPKYHPNPSQKTHKVSLDVYRQASNK 131
Query: 104 VVSILARKGR-CERASIDEVYLDLTDAAEAM---------LAETPPESLDEVDEEALKSH 153
++ IL++ G ++ASIDE Y+D+TD + ++E+ E D DE+ + S
Sbjct: 132 IMDILSKCGSPVKQASIDEAYVDITDYVNKLIESGYWKNIMSESHSECKDPQDEQQVHSD 191
Query: 154 ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+G + D+ + + + + D L G + LR Q+ E +TCS GIAH
Sbjct: 192 -MGPMVRWNKDTCSAMGDLVTSYGI--FDLQLYLGSRLSASLRKQIFDELGYTCSTGIAH 248
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
K+LAKL S +NKP +QT + V + ++ + K+ +GGK G + VT +L
Sbjct: 249 GKILAKLVSSINKPNKQTVLQIEKVPDFMKTIKLSKINGMGGKFGAEIMKTFQVTMAHEL 308
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+S D+L + G+ GTWL+N RGI +++Q + +S + K+ + + +
Sbjct: 309 WVYSADELVKQLGYEHGTWLYNACRGIDFQKIQGQTKSQSMTACKNLTP--NIHSTDDAR 366
Query: 334 HWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 386
+WL L EL R+ ++ E N+R L LH F++ + + K SKSCP
Sbjct: 367 YWLGILASELYTRVNTEFETNQRWPKLLVLH---FRNPNCPADK---SKSCPF 413
>gi|296419283|ref|XP_002839244.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635259|emb|CAZ83435.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 178/378 (47%), Gaps = 36/378 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E ++ P AV Q+ LIAV Y AR + V R
Sbjct: 29 RVIAHIDLDAFYAQCEMKRLGTDENTPLAVQQWQ-----SLIAVNYPAREFNVSRHSTAV 83
Query: 72 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSIL-ARKGRC 114
+A +VCPQ++LV V R KA L YR +++SI A R
Sbjct: 84 DALKVCPQLKLVHVATWRSGDEHWGYRENPDIVTCKACLDPYRIESKKIMSIFRAACLRV 143
Query: 115 ERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDGNDSKAT 168
E+ASIDE +LDL+ L + PP D ++ L GLE K
Sbjct: 144 EKASIDESFLDLSVMVHERLLKRFPVLILPPPHNDPAEKLPLPPE--GLEIKWARSHLLE 201
Query: 169 VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 228
+ E C D D + IV E+R V KE +TCSAGIA NK+LAKL SG KP
Sbjct: 202 LAE-DCDEQLDWDDVGMGVAAEIVEEVRTSVRKELGYTCSAGIAQNKLLAKLGSGYKKPN 260
Query: 229 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 288
QQT V + + L++ K++ LGGKLG + E G + LL LQ +
Sbjct: 261 QQTIVRIRAAQRFLNTFKFTKLRNLGGKLGERISEEFGTEELSSLLDTPLQALQLKLNDD 320
Query: 289 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV-QHWLNQLCEELSERL 347
T TW++NI RGI EV R L KS S KSF R T A WL ++ R+
Sbjct: 321 TATWVYNIIRGIDKSEVNPRTLIKSMLSAKSF---RPYITTADAGSKWLTIFISDIYSRM 377
Query: 348 CSD-LEQNKRIAHTLTLH 364
+ + + KR T+TL+
Sbjct: 378 EEEGVMEGKRRPKTMTLN 395
>gi|310794025|gb|EFQ29486.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 637
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 185/382 (48%), Gaps = 38/382 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + + P AV Q+ GLIAV Y AR YG+ R
Sbjct: 41 RVIAHIDLDAFYAQCEMVRLGVPKDQPLAVQQWQ-----GLIAVNYPAREYGIGRHCTLP 95
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSILARK--------------- 111
+AK++CP + V R D +YR N S+ VS+ +
Sbjct: 96 DAKKLCPTLVAQHVATWREGDDKWAYRHDAAVNIQSDKVSLDPYRLQSRRILGVIKESLP 155
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 163
+ E+ASIDEV+LDL+ ++L E PE D+ E+ + + L+ +
Sbjct: 156 PDIQKIEKASIDEVFLDLSAQVHSILLERFPELANPPPYDDPTEDLPRPSVAALDWQ--A 213
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D+ + E D D D + G IV +R Q+L+ ++TCSAGIA NK+L+KL SG
Sbjct: 214 DALVDLDEEQESVDPDWDDVAILIGSEIVRHVRGQILERLQYTCSAGIAKNKLLSKLGSG 273
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP QQT + +V L K++ LGGKLG ++ + V +LL D+++
Sbjct: 274 HKKPNQQTVIRNRAVTHFLSGFKFTKIRNLGGKLGENVVSTFNTDAVRELLDIPLDQMKA 333
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G +TG W+++ RGI EV +R KS S KSF + T WL ++
Sbjct: 334 KLGHDTGNWVYDTIRGIDTSEVNSRTQIKSMLSAKSFRP--YINTPEQAIRWLRIFAADI 391
Query: 344 SERLCSD-LEQNKRIAHTLTLH 364
RL + + +NKR T+ LH
Sbjct: 392 FARLIEEGVLENKRRPRTINLH 413
>gi|388583788|gb|EIM24089.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 584
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 222/484 (45%), Gaps = 55/484 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H DLD Y Q E+++ P V Q++ GLIA+ Y AR YG+ R
Sbjct: 19 RVICHADLDAAYAQFERKRLNLPLDAPIVVQQWS-----GLIAISYPARAYGITRHENIF 73
Query: 72 EAKEVCPQIELVQVPVAR-----------------GKADLSSYRNAGSEVVSILAR---K 111
EAK+ CP + V V + K L YR G++V+ +
Sbjct: 74 EAKKKCPNLVPVHVATYKEGVEEPGYWNEKPSPDSHKVSLEPYRREGAKVLKCMQEIFVG 133
Query: 112 GRCERASIDEVYLDLTDAAE-------AMLAETPPE-SLDEVDEE------ALKSHILGL 157
E+ASIDE Y+DLT+ L + PP+ +LD+V E A +++
Sbjct: 134 CEIEKASIDEQYIDLTELVRNKILERYPFLKQLPPDKTLDDVLPEPPIISFADVGNVIPT 193
Query: 158 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
S+ G+D + E + D + G +V E R + ++ +TCSAGI+HNK+L
Sbjct: 194 SSEKGSDGEIIADEEM---QTTWEDVAIQVGAQLVAEARKIMFEKIGYTCSAGISHNKIL 250
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKL S KP QT + +V L + +K++ LGGK G +L TV DL K
Sbjct: 251 AKLCSAYKKPDDQTVLRRDAVDSFLGPMSFQKIRSLGGKFGEALAAHYDAATVSDLWKVP 310
Query: 278 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 337
++Q +G W++N RGI+ +EV+ R++ KS + KS P + TV V+HWL
Sbjct: 311 LGEMQRQFG-EESIWIYNTIRGINSDEVKERVITKSMLASKSLRPP--INTVGEVRHWLK 367
Query: 338 QLCEELSERLCSDL-EQNKRIA--HTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQ 394
L ELS+RL E+ K+ ++ L + S + FP + +G IQ
Sbjct: 368 ILSSELSQRLKEVRGEEGKKTMWPKSIVLSMNQVYQSSRSHQGAFPYNNS---FGPELIQ 424
Query: 395 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
+ L L+EF+ + H G+ + L++S S + V +G I +
Sbjct: 425 KHAEKL----LKEFVRCDTKEMPDEHKLGYDVNKLALSFSGLATVEAGQRGIEGFLGQMT 480
Query: 455 KFGS 458
K G+
Sbjct: 481 KNGN 484
>gi|429862856|gb|ELA37463.1| sister chromatid cohesion protein eso1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 656
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 182/382 (47%), Gaps = 38/382 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + + P AV Q+ GLIAV Y AR +G+ R
Sbjct: 41 RVVAHIDLDAFYAQCEMVRLGVPKDQPLAVQQWQ-----GLIAVNYPAREHGIGRHCTLT 95
Query: 72 EAKEVCPQIELVQVPVAR------------------GKADLSSYRNAGSEVVSILARK-- 111
EAK++CP + V R K L YR ++++++
Sbjct: 96 EAKKMCPNLISQHVATWREGDDKWAYRDDAAANIQSDKVSLDPYRLQSRKILAVIKESLP 155
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 163
+ E+ASIDEV+LDL+ ++L E PE D+ E + L+ +
Sbjct: 156 QDLQKVEKASIDEVFLDLSAQVHSVLLERFPELGNPPPYDDPTENLPSPPVSALDWQ--A 213
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D+ + E D D D + G IV ++R QVL++ +TCSAG+A NK+L+KL SG
Sbjct: 214 DALIDLNEEEESMDPDWDDVAILIGSEIVRDVRRQVLEKLFYTCSAGVAKNKLLSKLGSG 273
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP QQT + +V L KM+ LGGKLG ++ V +LL D+++
Sbjct: 274 HKKPNQQTVIRNRAVDQFLSGFKFTKMRNLGGKLGENVVTTFNTDAVSELLPILLDQMKA 333
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G TGTW++N RGI EV +R KS S KSF + T WL ++
Sbjct: 334 KLGHETGTWVYNTIRGIDNSEVNSRTQIKSMLSAKSFRP--YINTPEKAVRWLRIFVADI 391
Query: 344 SERLCSD-LEQNKRIAHTLTLH 364
RL + + +NKR T+ LH
Sbjct: 392 FARLVEEGVLENKRRPRTINLH 413
>gi|85111821|ref|XP_964120.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
gi|28925887|gb|EAA34884.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
Length = 672
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 186/387 (48%), Gaps = 47/387 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLDCFY QVE + P AV Q+ GLIAV Y AR++G+ R
Sbjct: 44 RVIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARSFGIGRHCNVS 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILARK-- 111
EAK++CP + V +A K L YR ++++I+ +
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRKILAIIKEELP 158
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
+ E+ASIDEV++DL+ +L E PE D+ E I L+ +
Sbjct: 159 PHLQKVEKASIDEVFMDLSAQVHTILLERFPELANPPPYDDPTEMLPMPSITALDWQADA 218
Query: 161 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
D D A ++ D D D + G IV ++R+ + + +TCSAG+A NK+L+
Sbjct: 219 LVDLPDENAELE------DPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLLS 272
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL S KP QQT + S++ L KM+ LGGKLG + TV DLL S
Sbjct: 273 KLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQMFHTDTVKDLLSASV 332
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
++L+ G +TG W++N RGI EV R+ KS S KSF ++ + WL
Sbjct: 333 EQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQIKSMLSAKSFRP--SITSFEQAVRWLRI 390
Query: 339 LCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 391 FAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|336264622|ref|XP_003347087.1| hypothetical protein SMAC_05386 [Sordaria macrospora k-hell]
gi|380093781|emb|CCC08745.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 672
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 184/387 (47%), Gaps = 47/387 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLDCFY QVE + P AV Q+ GLIAV Y AR +G+ R
Sbjct: 44 RVIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARGFGIGRHCNVS 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILARK-- 111
EAK++CP + V +A K L YR +++I+ +
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRRILAIIKEELP 158
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
+ E+ASIDEV++DL+ A+L E PE D+ E I L+ +
Sbjct: 159 PHLQKVEKASIDEVFMDLSAQVHAILLERFPELANPPPYDDPTEMLPMPSITALDWRADA 218
Query: 161 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
D A ++ D D D + G IV ++R+ + + +TCSAG+A NK+L+
Sbjct: 219 LVDLPGENAELE------DPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLLS 272
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL S KP QQT + SV+ L KM+ LGGKLG + TV DLL S
Sbjct: 273 KLGSAYRKPNQQTVIRNRSVQHFLSDFKFTKMRNLGGKLGEQISQIYHTDTVKDLLGVSV 332
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
++L+ G +TG W++N RGI EV R+ KS S KSF ++ T WL
Sbjct: 333 EQLKSKLGDDTGVWVYNTVRGIDNSEVNPRVQIKSMLSAKSFRP--SIATFEQGVRWLRI 390
Query: 339 LCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 391 FAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|350297199|gb|EGZ78176.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 672
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 186/387 (48%), Gaps = 47/387 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RIIAH+DLDCFY QVE + P AV Q+ GLIAV Y AR++G+ R
Sbjct: 44 RIIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARSFGIGRHCNVS 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILARK-- 111
EAK++CP + V +A K L YR ++++I+ +
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRKILAIIKEELP 158
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
+ E+ASIDEV++DL+ +L E PE D+ E I L+ +
Sbjct: 159 PHLQKVEKASIDEVFMDLSAQVHTILLERFPELANPPPYDDPTEMLPMPSITALDWQADA 218
Query: 161 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
D D A ++ D D D + G IV ++R+ + + +TCSAG+A NK+L+
Sbjct: 219 LVDLPDENAELE------DPDWDDVAILIGSEIVRKVRIAIEDKLGYTCSAGVACNKLLS 272
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL S KP QQT + S++ L KM+ LGGKLG + TV DLL S
Sbjct: 273 KLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQMYHTDTVKDLLSASV 332
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
++L+ G +TG W++N RGI EV R+ KS S KSF ++ + WL
Sbjct: 333 EQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQIKSMLSAKSFRP--SITSFEQAVRWLRI 390
Query: 339 LCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 391 FAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|398405964|ref|XP_003854448.1| hypothetical protein MYCGRDRAFT_11773, partial [Zymoseptoria
tritici IPO323]
gi|339474331|gb|EGP89424.1| hypothetical protein MYCGRDRAFT_11773 [Zymoseptoria tritici IPO323]
Length = 479
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 150/476 (31%), Positives = 211/476 (44%), Gaps = 64/476 (13%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IA +D D FY Q E + P AV Q W+ +IA+ Y AR++G+KR
Sbjct: 32 NSPLRVIALIDFDAFYAQCETVRLELPADKPLAVQQ---WRA--IIALNYPARDHGLKRG 86
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRN----------AGSEVVSILARKGRC--- 114
M DE K +CP I L V R +YR+ A E I +RK
Sbjct: 87 MPVDEVKRLCPSIHLQHVATWREGEASWAYRSDQDKHMSNDKAALEPYRIESRKAFALIE 146
Query: 115 -----------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 163
E+ASIDE+YLDL+ +L + PE L + + L L
Sbjct: 147 SCLPVTSTVLLEKASIDEMYLDLSTYVHDVLLDRYPELL--ISSRDTEGQYLPLPPATSL 204
Query: 164 D--------SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 215
D +A +W DA + G ++ ELR V + +T SAGIA NK
Sbjct: 205 DWQEDNILGDQAQSLDW----DA----VAMNIGAGVIRELRHTVHSKLHYTASAGIASNK 256
Query: 216 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
MLAKL +G KP QT + V L SL KK++ LGG+LGT+++ VTTV DLL
Sbjct: 257 MLAKLGAGCKKPNNQTILRTRDVPEFLSSLKYKKIRGLGGQLGTAVEEAFNVTTVADLLP 316
Query: 276 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 335
S ++Q G + GTW++N+ RG EV R LP+S S K+F A+ + HW
Sbjct: 317 VSLKQMQTLLGADEGTWIYNVIRGREHSEVSTRKLPQSMLSQKTFTP--AIANIEKASHW 374
Query: 336 LNQLCEELSERLCS-DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQ 394
L EL +R+ + D +R TL ++ + P R A I
Sbjct: 375 LRMFAAELYDRVVALDTPTLRRRPRTLAVN------------HHINGRFGPTRSRQATIS 422
Query: 395 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
T + A L L S ++ + W AL V S V + + + SI +F
Sbjct: 423 --TGSTMSADLIYELASSKLREISAEAVSWPCAALGVVLSNFVELDTQSLSITTFF 476
>gi|336463579|gb|EGO51819.1| hypothetical protein NEUTE1DRAFT_149518 [Neurospora tetrasperma
FGSC 2508]
Length = 672
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 186/387 (48%), Gaps = 47/387 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLDCFY QVE + P AV Q+ GLIAV Y AR++G+ R
Sbjct: 44 RVIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARSFGIGRHCNVS 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILARK-- 111
EAK++CP + V +A K L YR ++++I+ +
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRKILAIIKEELP 158
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
+ E+ASIDE+++DL+ +L E PE D+ E I L+ +
Sbjct: 159 PHLQKVEKASIDELFMDLSAQVHTILIERFPELANPPPYDDPTEMLPMPSITALDWQADA 218
Query: 161 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
D D A ++ D D D + G IV ++R+ + + +TCSAG+A NK+L+
Sbjct: 219 LVDLPDENAELE------DPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLLS 272
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL S KP QQT + S++ L KM+ LGGKLG + TV DLL S
Sbjct: 273 KLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQMFHTDTVKDLLSASV 332
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
++L+ G +TG W++N RGI EV R+ KS S KSF ++ + WL
Sbjct: 333 EQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVHIKSMLSAKSFRP--SITSFEQAVRWLRI 390
Query: 339 LCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 391 FAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|398406126|ref|XP_003854529.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
gi|339474412|gb|EGP89505.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
Length = 678
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 215/473 (45%), Gaps = 64/473 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + R P AV Q+ GLIA+ Y AR YG+ R +
Sbjct: 39 RVIAHVDLDAFYAQCEMVRLDVDRDTPLAVQQWQ-----GLIAINYPARAYGLNRHVTIT 93
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 108
EAKE CP+I V +A K L YR ++++I+
Sbjct: 94 EAKEKCPEIICQHVATWKEGDAKWSYSEDAWKEIATRKVSLDPYRIESRKILAIIKEFLP 153
Query: 109 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
A K R E+ASIDEV+LDL+ +L E PE D+ E + L+ K
Sbjct: 154 ADKQRVEKASIDEVFLDLSAHVHFILLERYPELRGPPPYDDPTEPLPRPPTTALDWKADA 213
Query: 161 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
D + S++ D D D ++ IV ++R + ++ ++TCSAG++ NKMLA
Sbjct: 214 LVDLDTSQSEED------DPDWDDIVMLIASEIVRDVRKAIWEQLKYTCSAGLSRNKMLA 267
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL SG KP QT + +V+ L K++ LGGKLG + TV +LL
Sbjct: 268 KLGSGHKKPNSQTIIRNRAVQHFLSGFKFTKIRNLGGKLGDEVVAAFNTDTVSELLPVPV 327
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
+++++ G +TG WL +I RG EV R KS S KSF ++ + WL
Sbjct: 328 EQMKKQLGDDTGMWLHSIIRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEVACRWLRI 385
Query: 339 LCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 397
++ RL + + NKR TLT+H + +R SK P+ G A I ED
Sbjct: 386 FVADIFGRLVEEGVLDNKRRPKTLTIH----HRQGAQTR----SKQAPIPMGRA-ITED- 435
Query: 398 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
L++A + L GV G W LS++ + G I +
Sbjct: 436 -GLYEAA-KNLLA--GVVVDG---RAWPCANLSLAVGGFEEGVQGNLGIGNFL 481
>gi|452822562|gb|EME29580.1| DNA polymerase eta subunit [Galdieria sulphuraria]
Length = 546
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 193/404 (47%), Gaps = 41/404 (10%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
A D +I H+DLDCFY QVE + P V Q++ G+IAV Y AR YG
Sbjct: 10 AHSDLEQFPVIIHLDLDCFYAQVESVRLGLDPSTPLCVQQWD-----GVIAVNYAAREYG 64
Query: 64 VKRSMRGDEAKEVCPQIELVQVPV-----------------------ARGKADLSSYRNA 100
+ R R ++ KE CP LV V + K L YR A
Sbjct: 65 ISRHERIEKVKEKCPNCVLVHVETVGFPDQSSSRENVSNPDLLNHGKSETKVSLDRYREA 124
Query: 101 GSEVVSILARKGR-CERASIDEVYLDLTDAAEAMLAETPPE--SLDEVDEEALKSHILGL 157
+++ +L CE+ASIDE YLD+++ + +L T + S+ + E+ L +
Sbjct: 125 SAKIFQLLFSYSELCEKASIDEAYLDVSEQVQDILVATRNQRSSIGSIFEQ------LSM 178
Query: 158 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
K+ T+ + + + ++L+ G I ++R + + +T SAGIA NK+L
Sbjct: 179 TEKERAYYFETIFQPFGKRELP-LSQILSIGCAIAAKIRYAIYSQFNYTSSAGIAENKLL 237
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKL S +NKP +QT + +V LL++LP+KK++ LGGKLGT ++ T + +
Sbjct: 238 AKLGSSLNKPNRQTLISPKAVPFLLENLPLKKLRGLGGKLGTRIEERTNAKTAKEAQNVT 297
Query: 278 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 337
+K E G W++N+ RGI V AR + KS + KSF +A + ++ W+
Sbjct: 298 LEKWNEIVGRENAEWIYNLVRGIDYSPVNARGITKSILAAKSF---KAECSWEGMEKWIK 354
Query: 338 QLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 381
L EL ERL D N R +H S+ S S FP+
Sbjct: 355 ILAYELCERLRKDETMNSRRPINFIVHYSSVGSVSSSKSIPFPN 398
>gi|358393445|gb|EHK42846.1| hypothetical protein TRIATDRAFT_33108 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 155/511 (30%), Positives = 223/511 (43%), Gaps = 80/511 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR +G+ R
Sbjct: 39 RVIAHIDLDAFYAQCEMIRLGVAEDKPLAVQQWQ-----GLIAVNYPARKWGIGRHCNVA 93
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----LARK---------- 111
EAK++CP + V R D +YR N ++ VS+ +RK
Sbjct: 94 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILATIKESLP 153
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDG 162
+ E+ASIDEV+LDL+ A L +PP S D V E LE +
Sbjct: 154 RDLQKVEKASIDEVFLDLSAQIHAELLRRFPELSSPPPSGD-VSEPLPFPSAAALEWQ-- 210
Query: 163 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
ND+ ++E D D D + G IV +R QV ++ +TCSAGIA+NK+++KL S
Sbjct: 211 NDNLIDLEEDEEAVDPDWDDVAILIGSEIVRRVRAQVREKLGYTCSAGIANNKLVSKLGS 270
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282
KP +QT V +V L + + KM+ LGGKLG + + G ++ +L ++ +
Sbjct: 271 AFKKPNEQTVVRNRAVMLFLTEIKVTKMRNLGGKLGDQVVSTFGTESIKELRDIPLEQFK 330
Query: 283 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL-KTVASVQHWLNQLCE 341
G T W +N RGI EV +R KS S KSF R L K+ WL
Sbjct: 331 AKLGEETAIWFYNTIRGIDHSEVNSRTQIKSMLSAKSF---RPLIKSSEQATKWLRIFAG 387
Query: 342 ELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNL 400
++ RL + + ++KR T+ LH + S+ CP+ G ++ F L
Sbjct: 388 DIYSRLVEEGILEHKRWPRTINLHHRHAGQTR--------SRGCPIPTGKPLDEQALFIL 439
Query: 401 FQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTS 460
+ L + + G W T LS+S S + G I +F D+
Sbjct: 440 CKELLNQIVAEGG---------AWPCTNLSLSVSGFEEGVKGNMGIGAFFKKRDE----- 485
Query: 461 EQLPDNFIDAAPLSPSGSESYSTLNSTELQN 491
PL P LN TE +N
Sbjct: 486 --------TPPPLRP--------LNDTEFEN 500
>gi|302822400|ref|XP_002992858.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
gi|300139306|gb|EFJ06049.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
Length = 808
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 125/209 (59%), Gaps = 27/209 (12%)
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+LGGKLG L+ ELGV TVG LL+FSE KLQ+ YG NTGTWLWN +RGI+G+EVQ R LP
Sbjct: 8 KLGGKLGQELEGELGVKTVGGLLQFSEVKLQDMYGPNTGTWLWNTSRGINGDEVQDRTLP 67
Query: 312 KSHGSGKSFPGPRALKTVAS--------VQHWLNQLCEELSERLCSDLEQNKRIA-HTLT 362
KSH SGK+FPGP+ALKT+ + V +WL +L E L RL DL QN R A H LT
Sbjct: 68 KSHSSGKTFPGPQALKTLETLRATFLLQVVYWLKELAETLQLRLDEDLSQNNRTAQHLLT 127
Query: 363 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
+HAS S + KF SKS PLRYG KI AG K Q S
Sbjct: 128 IHASCHIESRATEAPKFSSKSRPLRYGVDKI--------SAG----------KEQSEITS 169
Query: 423 GWRITALSVSASKIVPVLSGTCSIMKYFN 451
W +T LS++AS I+ G I +Y +
Sbjct: 170 SWAVTGLSLTASNIMAKPMGVNPITQYVD 198
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 677 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 727
W+ + EEIDPSV ELP EIQ E+Q R + R F+ D+ K
Sbjct: 267 WEYKQEEIDPSVFAELPSEIQQELQVTHRRNLHKERTVASFSDQDHLKHEK 317
>gi|302921584|ref|XP_003053312.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734252|gb|EEU47599.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 683
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 211/468 (45%), Gaps = 55/468 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR G+ R D
Sbjct: 46 RVIAHIDLDAFYAQCEMVRLGTPEDKPLAVQQWQ-----GLIAVNYPARESGIGRHCNVD 100
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----LARK---------- 111
EAK++CP + V R D +YR N ++ VS+ +RK
Sbjct: 101 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILATIKDALP 160
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 163
+ E+ASIDEV+LDL+ ++L E PE D+ E I+ L+ +
Sbjct: 161 HDLQKVEKASIDEVFLDLSSQIHSILLERFPELKNPPPYDDPTERLPLPSIVALDWQ--T 218
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL SG
Sbjct: 219 DALVDLDEEQETIDPDWDDVAILIGSEIVRDVRAKVRQDLGYTCSAGVASNKLLSKLGSG 278
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP +QT V +V L I K++ LGGKLG + + ++ +LL+ ++
Sbjct: 279 YKKPNKQTVVRNRAVSSFLSGFKITKLRNLGGKLGEQIVSTFNTESLTELLEVPLATIKS 338
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G +TG W+ N RGI EV +R KS S KSF + + WL ++
Sbjct: 339 KLGHDTGLWIHNTIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSQEQAVRWLRIFVADI 396
Query: 344 SERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ 402
RL + + +NKR T+ LH + S+ P+R G A +E L
Sbjct: 397 FARLVEEGVLENKRRPRTINLHHR--------HEGQVKSRQSPIRQGKALNEESLLEL-- 446
Query: 403 AGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
++ LG V+ + W LS+S + G I +
Sbjct: 447 --AKDLLGQIIVEGR-----VWPCANLSLSVGGFEDGVKGNMGIDAFL 487
>gi|346977255|gb|EGY20707.1| sister chromatid cohesion protein Eso1 [Verticillium dahliae
VdLs.17]
Length = 660
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 187/386 (48%), Gaps = 38/386 (9%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+IAH+DLD FY Q E + P AV Q+ GLIA+ Y AR++G+ R
Sbjct: 38 SSPLRVIAHIDLDAFYAQCEMVRLNTPEDQPLAVQQWQ-----GLIAINYPARSFGIGRH 92
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKG 112
EA+++CP + V R D +YR N S+ VS ILA
Sbjct: 93 CTLAEARKLCPDLIAQHVATWREGDDKWAYRDDAAANITSDKVSLDPYRLQSRRILALIK 152
Query: 113 --------RCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLES 159
+ E+ASIDEV+ DL+ ++L E PE D+ E + ++ L+
Sbjct: 153 ETLPSDLQKVEKASIDEVFCDLSAHVHSILLERFPELNNPPPYDDPTERLPRPPVVALDW 212
Query: 160 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
+ D+ + E D D D + G I+ +R ++ + +TCSAGIA+NKML+K
Sbjct: 213 Q--ADALIDLDEDAENQDPDWDDVAILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSK 270
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 279
L S KP QQT + +++ L K++ LGGKLG ++ N TV DLL D
Sbjct: 271 LGSAHKKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLD 330
Query: 280 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 339
+++ G TG W++N RGI EV +R KS S KSF ++ T WL
Sbjct: 331 QMKARLGDETGIWVYNTIRGIDQSEVNSRTQIKSMLSAKSFRP--SIHTPDQGNRWLRIF 388
Query: 340 CEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 389 VADIFSRLVEEGVLENKRRPKTINLH 414
>gi|392574155|gb|EIW67292.1| hypothetical protein TREMEDRAFT_12962, partial [Tremella
mesenterica DSM 1558]
Length = 645
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 178/381 (46%), Gaps = 67/381 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IAH D+D Y Q EQ + +P Q+ +IAV Y AR YG+KR DEA
Sbjct: 17 IAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQ-----SIIAVNYPARKYGIKRFNTIDEA 71
Query: 74 KEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSI---LARKGRC 114
K++CP + + V R K L YR ++++I + +G
Sbjct: 72 KKMCPHLVVQHVATYRNGEAEAGYWGEVDPRTHKVSLDPYRRESLKILAIFKEMVPRGEI 131
Query: 115 ERASIDEVYLDLT-DAAEAMLAETP---------PESLDE------------------VD 146
E+ASIDE +LDLT E +L P PE LD +D
Sbjct: 132 EKASIDEAFLDLTTQVLERLLERFPYLSQVPPDAPEGLDSALPTAPPVNWQNSGNVFPID 191
Query: 147 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFT 206
E + LG+E DG S+ +W D L G I++ELR +V K +T
Sbjct: 192 GETDPA--LGIEEPDG--SQEPEGKW--------EDWALCIGAEIMSELRAEVYKRLHYT 239
Query: 207 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG 266
CSAGIAHNK +AKL S KP QT + ++ L ++ ++ LGGKLG ++ E G
Sbjct: 240 CSAGIAHNKAMAKLCSAWKKPNNQTVLRIAATPAFLRNMDFTDIRFLGGKLGNAIATEYG 299
Query: 267 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 326
TVGD+L D+LQ +G W++NI RGI EV+ R+ KS + K+ A+
Sbjct: 300 AKTVGDMLTVPLDELQRRFG-EESVWVYNIIRGIDHTEVKERVTTKSMLASKN--TRPAV 356
Query: 327 KTVASVQHWLNQLCEELSERL 347
T A HW+ L EL+ RL
Sbjct: 357 TTPAQGLHWIQVLSGELNVRL 377
>gi|212534508|ref|XP_002147410.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
gi|210069809|gb|EEA23899.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
Length = 673
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 185/407 (45%), Gaps = 62/407 (15%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+IAH+DLD FY Q E + R P AV Q+ LIA+ Y AR +G+ R
Sbjct: 38 SSPLRVIAHIDLDAFYAQCEMVRLGTPRDTPLAVQQWE-----SLIAINYAARPFGITRM 92
Query: 68 MRGDEAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVS-- 106
+ EAK+ CP++ L V R K L YR ++S
Sbjct: 93 LSAIEAKKRCPELVLQHVATFREGEGGRWAYRDDASYKIKTDKVSLDPYRAQSRRILSTI 152
Query: 107 ----------ILARK--------GRCERASIDEVYLDLTDAAEAMLAETPPE------SL 142
IL+ K + E+AS+DEV++DL+ A+L + PE +
Sbjct: 153 KEEVSRQRDEILSSKDVPLEFQAAKIEKASVDEVFIDLSSLVYAVLYQRYPELRRAPTTF 212
Query: 143 DEVDEEALKSH-ILGLESKDGN---DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQ 198
D+ L +DG D + T ++ D D D + G I +R
Sbjct: 213 DKTTSLPTPPTTALEWFPEDGLVDLDERETEED-----DPDWDDVAMLIGAEITRSIRAV 267
Query: 199 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 258
+ + +TCSAGIA NKM++KL S NKP +QT + +++ L K++ LGGKLG
Sbjct: 268 IWDKLSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQKFLGGFQFTKIRWLGGKLG 327
Query: 259 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 318
+ E G V +LL S D+ + +T W++NI RG+ EV R KS S K
Sbjct: 328 ERISAEFGTEEVKELLNVSLDQFKAKLDDDTAVWVYNIIRGVDDSEVNPRTQIKSMLSAK 387
Query: 319 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
SF ++ + + WL +L RL D L +NKR TL+LH
Sbjct: 388 SFRP--SINSADQARKWLRIFAADLYNRLVEDGLLENKRRPTTLSLH 432
>gi|428179324|gb|EKX48195.1| DNA polymerase eta, replication coupled repair, partial [Guillardia
theta CCMP2712]
Length = 242
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 137/254 (53%), Gaps = 27/254 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H+D+D FY QVE R+ R P AV Q W+G LIAV Y AR G+ R MR +
Sbjct: 12 RVILHIDMDAFYAQVEHRRTGISREEPLAVQQ---WEG--LIAVNYPARARGITRHMRVE 66
Query: 72 EAKEVCPQIELVQ----VPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
EAK++CP + LV +P K L YRNA EV +L + G E+ASIDE Y+D+T
Sbjct: 67 EAKKICPDLHLVHKRDDLP---RKVSLERYRNASMEVFEVLQQYGIVEKASIDEAYIDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ ++ D+ L E+ D D T KE D L
Sbjct: 124 KTVNNLYRRIFDLEQNDADKHGLN------ETNDRFDEINTAKE---------EDLKLLL 168
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
G +I R VL+ T FTCS GI+HNKML+KLAS +KP QQT VP V+ L++ LP+
Sbjct: 169 GAVICQAARAGVLEHTSFTCSGGISHNKMLSKLASARHKPNQQTIVPVQGVQSLMEQLPL 228
Query: 248 KKMKQLGGKLGTSL 261
K ++ LGGK G L
Sbjct: 229 KNIRGLGGKFGNQL 242
>gi|449017709|dbj|BAM81111.1| similar to DNA-damage-inducible protein P [Cyanidioschyzon merolae
strain 10D]
Length = 516
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/470 (29%), Positives = 198/470 (42%), Gaps = 97/470 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ H+D+DCFY QVE+++ +P VVQ+N ++AV Y AR G+KR
Sbjct: 17 RIVVHIDMDCFYAQVERKRLDLAEDVPLCVVQWN-----SILAVSYAARAAGIKRGATPQ 71
Query: 72 EAKEVCPQIELVQVPV--ARGKA------DLSS---------------YRNAGSEVVSIL 108
EAK CP+ LV V A G+ DLS YR ++ IL
Sbjct: 72 EAKSKCPECVLVHVETVDAAGRKPQVSELDLSEEASIVRAANTVCLDRYRLESEKIFGIL 131
Query: 109 AR-KGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 167
+R ER SIDE +++LTD +D+ DE
Sbjct: 132 SRFSDAVERCSIDEAFIELTDV------------VDDFDE-------------------- 159
Query: 168 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
V +V +R +L E +TCSAG+A NKMLAK AS NKP
Sbjct: 160 --------------------AVRLVQRMRDAILDELRYTCSAGVACNKMLAKFASSTNKP 199
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
+ T +P+S +L +P+ +++ LGGK G LQ T+ DL + S LQ +Y
Sbjct: 200 NKLTAIPWSETNSILARIPLSRVRGLGGKFGAELQRNFKAETLADLSQLSMAALQAAYEP 259
Query: 288 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
T WL+ +ARG V+ R P+S + KSF + T + L L L +R+
Sbjct: 260 CTAEWLFWLARGYDPSRVEPRDRPRSLLAAKSFA---PVDTWQDARRILFLLATRLEQRI 316
Query: 348 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLRE 407
D + R TL + ++ ++ R S+S P +ED G +
Sbjct: 317 ERDTSMHHRRPRTLCVSFTSAQAGLQGQRHHHASRSGPF---PTCAKEDAAASIAEGAEK 373
Query: 408 FLGSFGVKTQGSHYSGWRITA--LSVSASKIVPVLSGTCSIMKYFNGPDK 455
L S SG+R + A+ P+ SG SI Y P K
Sbjct: 374 LLRSI--------RSGFRFPCKRFMLEATNFQPIASGAYSIRSYMGKPGK 415
>gi|46130620|ref|XP_389090.1| hypothetical protein FG08914.1 [Gibberella zeae PH-1]
Length = 684
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 200/428 (46%), Gaps = 46/428 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR YG+ R +
Sbjct: 44 RVIAHIDLDAFYAQCEIVRLGIPEDRPLAVQQWQ-----GLIAVNYAAREYGIGRHCNVE 98
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRN-AGSEVVS---------ILARK---------- 111
EAK++CP++ V R D +YR+ A + +V+ + +RK
Sbjct: 99 EAKKLCPELIAQHVATWREGDDKWAYRDDAAANIVTDKVSLDPYRLQSRKILACIKDALP 158
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 163
+ E+ASIDEV+LDL+ ++L E PE D+ E+ I L+ +
Sbjct: 159 ADVQKVEKASIDEVFLDLSSQVRSILLERFPELSNPPPYDDPTEKLPLPSIAALDWQ--T 216
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S
Sbjct: 217 DALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASNKLLSKLGSA 276
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP +QT V +V + + K++ +GGKLG + + V +LL+ ++
Sbjct: 277 YKKPNKQTVVRNRAVSAFMAGFKVMKLRNMGGKLGEQIVSTFNTENVTELLEVPLSSMKA 336
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G +TG W++N RGI EV R KS S KSF + + WL ++
Sbjct: 337 KLGHDTGFWVFNTIRGIDTSEVNPRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAADI 394
Query: 344 SERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ 402
RL + + +NKR T+ LH + S+ P+ G A +E F L +
Sbjct: 395 FARLVEEGVLENKRRPKTMNLHHR--------HEGQVRSRQVPIHQGRALDEECLFELAK 446
Query: 403 AGLREFLG 410
L + +
Sbjct: 447 DLLSQIIA 454
>gi|355712653|gb|AES04421.1| polymerase , eta [Mustela putorius furo]
Length = 222
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 132/222 (59%), Gaps = 14/222 (6%)
Query: 34 LRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKAD 93
LR P AVVQY WKGGG++AV YEAR +GV RSM D+AK++CP + L QV +RGKAD
Sbjct: 1 LRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKAD 60
Query: 94 LSSYRNAGSEVVSILAR----KGRCERASIDEVYLDLTDAAEAML--AETPPESLDEVDE 147
L+ YR A EV+ +++R ERASIDE Y+DLT A + L + P S D +
Sbjct: 61 LTKYREASVEVMGVMSRFAVIDAVIERASIDEAYIDLTGAVQERLQKLQGQPISADLLPT 120
Query: 148 EALKSHILGLESKDGNDSKATVK-----EWLCRCDADH---RDKLLACGVLIVTELRMQV 199
++ G + +G D K + +WL D+ D L G +IV E+R +
Sbjct: 121 TYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNPTSPDLQLTVGAVIVEEMRAAI 180
Query: 200 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
KET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 181 EKETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 222
>gi|408392199|gb|EKJ71557.1| hypothetical protein FPSE_08196 [Fusarium pseudograminearum CS3096]
Length = 737
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 203/432 (46%), Gaps = 46/432 (10%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR +G+ R
Sbjct: 93 SNPLRVIAHIDLDAFYAQCEIVRLGIPEDRPLAVQQWQ-----GLIAVNYAAREHGIGRH 147
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRN-AGSEVVS---------ILARK------ 111
+EAK++CP++ V R D +YR+ A + +V+ + +RK
Sbjct: 148 CNVEEAKKLCPELIAQHVATWREGDDKWAYRDDAAANIVTDKVSLDPYRLQSRKILACIK 207
Query: 112 -------GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLES 159
+ E+ASIDEV+LDL+ ++L E PE D+ E+ I L+
Sbjct: 208 DALPADVQKVEKASIDEVFLDLSSQVRSILLERFPELSNPPPYDDPTEKLPLPSIAALDW 267
Query: 160 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
+ D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+K
Sbjct: 268 Q--TDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASNKLLSK 325
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 279
L S KP +QT V +V + + K++ LGGKLG + + V +LL+
Sbjct: 326 LGSAYKKPNKQTVVRNRAVSAFMAGFKVTKLRNLGGKLGEQIVSTFNTENVTELLEVPLS 385
Query: 280 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 339
++ G +TG W++N RGI EV +R KS S KSF + + WL
Sbjct: 386 SMKAKLGHDTGFWVFNTIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSSEQATRWLRIF 443
Query: 340 CEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTF 398
++ RL + + +NKR T+ LH + S+ P+ G A +E F
Sbjct: 444 AADIFARLVEEGVLENKRRPKTMNLH--------HRHEGQVRSRQVPIHQGRALDEECLF 495
Query: 399 NLFQAGLREFLG 410
L + L + +
Sbjct: 496 ELAKDLLSQIIA 507
>gi|453085241|gb|EMF13284.1| DNA/RNA polymerase, partial [Mycosphaerella populorum SO2202]
Length = 696
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 182/386 (47%), Gaps = 45/386 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + + P AV Q+ GLIA+ Y AR YG+ R +
Sbjct: 30 RVIAHIDLDAFYAQCEMVRLGIDKDQPLAVQQWQ-----GLIAINYPARAYGLNRHVTIT 84
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVV-----SIL 108
EAKE CP I V +A K L YR +++ ++
Sbjct: 85 EAKEKCPDIICQHVATWKEGNATWEYADDAFKEIAIRKVSLDPYRIESRKILKCIKDTLP 144
Query: 109 ARKGRCERASIDEVYLDLTDAAEAMLAE-----TPPESLDEVDEEALKSHILGLESKDGN 163
A K R E+ASIDEV+LDL+ +L E P D+ E K L+ K
Sbjct: 145 ADKQRVEKASIDEVFLDLSAQVHGILLERYPGLKGPPPYDDPSEPLPKPPTTVLDWKADA 204
Query: 164 ----DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
D K T ++ D D D ++ IV ++R V K+ +T SAGI+ NKMLAK
Sbjct: 205 LVDLDEKYTEED-----DPDWDDIVVLLASEIVRDVRAAVFKQLNYTMSAGISRNKMLAK 259
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 279
L SG KP QT + +V+ L K++ LGGKLG + TV +LL S +
Sbjct: 260 LGSGHKKPNSQTVIRNRAVQHFLSGYKFTKIRSLGGKLGDQIVAAFNTDTVAELLPVSVE 319
Query: 280 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 339
+L++ G TG+WL++I RG EV R KS S KSF ++ + WL
Sbjct: 320 QLKKQLGDETGSWLYDILRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFDVACKWLRIF 377
Query: 340 CEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR ++ +H
Sbjct: 378 VSDIYGRLVEEGVLENKRRPKSINIH 403
>gi|353235092|emb|CCA67110.1| related to DNA polymerase eta [Piriformospora indica DSM 11827]
Length = 615
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/495 (28%), Positives = 230/495 (46%), Gaps = 61/495 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I DLDCFY Q EQR+ LP V+Q++ LIAV Y AR +G+KR +
Sbjct: 37 RTIGLCDLDCFYAQCEQRRLGIDPALPIVVLQWDM-----LIAVNYPAREFGIKRMTKLP 91
Query: 72 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK---G 112
+AK++CP + +V V + K L YR ++++++
Sbjct: 92 DAKKMCPNLVVVHVATYKDGESEPKYHPDPNNKTHKVSLDLYRRESNKILNVFKTTLPTA 151
Query: 113 RCERASIDEVYLDLTDAAEAMLAE-------TPPESLDEVDE---------EALKSHI-- 154
E+ASIDE ++D T + +L E PP+S +D E KS +
Sbjct: 152 EIEKASIDESFVDFTRPIQQILLERYPELASPPPDSPLNLDTPLPPPPARLEWHKSSVWV 211
Query: 155 -LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+ E++ G +S ++ A D L+ ++ R ++ + +T SAGIA
Sbjct: 212 PVNPEAEKGTESSEGPQQEQDSTPATWHDVALSIAAELLDNTRREIRETLGYTTSAGIAR 271
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NK LAKL + KP Q+ + +++ L LP +K++ LGGKLGT L E TVG+L
Sbjct: 272 NKFLAKLVASYKKPNSQSVLRNAAIPNYLRPLPFQKIRFLGGKLGTILAEEYEAKTVGEL 331
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASV 332
L ++Q +G + W++ + RGI EV+ + + KS + K+ P P ++ V
Sbjct: 332 LYIDLAEMQRKFGPES-LWVYQVFRGIDIGEVKEKPPVNKSMLASKNLPKP--IRQDGDV 388
Query: 333 QHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAK 392
W+ LC EL+ RL E T+ LH ++ DS S+ SK P +
Sbjct: 389 LQWVRVLCSELAVRLLEARETGTVWPKTIALHTK--QAGDSASK----SKQTPFPF---- 438
Query: 393 IQEDTFNLFQAGL----REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMK 448
+++ T ++ A + +E S + + +I ++VS + + + G +I
Sbjct: 439 VRDLTGDVIVAAVMKLWKELHTSDAERAANPNVPKMKIINIAVSFNGVETLEQGQRNIAG 498
Query: 449 YFNGPDKFGSTSEQL 463
+F GP G++S +L
Sbjct: 499 FFGGPASKGASSSKL 513
>gi|406861269|gb|EKD14324.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 717
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 194/438 (44%), Gaps = 65/438 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 43 RVIAHVDLDAFYAQCEMVRLGIEEDKPLAVQQWQ-----GLIAINYPARAFGLARHVTPI 97
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 109
EAK++CP I L V +A K L YR ++ +
Sbjct: 98 EAKKLCPDIILQHVATWREGDEKWAYRDDAASNIATDKVSLDPYRLESRRILKCIKDALP 157
Query: 110 -RKGRCERASIDEVYLDLTDAAEAMLAET-----PPESLDEVDEEALKSHILGLESKDGN 163
+ + E+ASIDEV++DL+ A L E P D+ E +L L
Sbjct: 158 EKYRKVEKASIDEVFMDLSAQIHATLLERYEELRGPAPYDDPTE------LLPLPPTTVL 211
Query: 164 DSKATVKEWLCRCDADHR--------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 215
D KA L D D D + G I+ ++R V ++TCS G+A NK
Sbjct: 212 DWKADA---LVDLDVDETEEDDPDWDDVAILIGSEIIRDVRAAVRTHLKYTCSGGVAQNK 268
Query: 216 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
MLAKL S KP QQT + +++ L K++ GGK+G S+ TV DLL
Sbjct: 269 MLAKLGSAHKKPNQQTIIRNRAIQQFLSEFKFTKIRGFGGKMGDSITAAFNTDTVQDLLA 328
Query: 276 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 335
D+L++ G +TGTW++ I RG EV +R KS S KSF ++ T W
Sbjct: 329 VPIDQLKQKLGDDTGTWVYEIIRGKESSEVNSRTAIKSMLSAKSFRP--SINTAEQANRW 386
Query: 336 LNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQ 394
L ++ RL + + +NKR T+ LH S + S+S P+ G KI
Sbjct: 387 LRIFAADIYSRLVEEGVLENKRRPKTINLHHR--------SGGQTKSRSSPISLGK-KI- 436
Query: 395 EDTFNLFQAGLREFLGSF 412
D LF+ R LG
Sbjct: 437 -DEVGLFELA-RSLLGQL 452
>gi|154309314|ref|XP_001553991.1| hypothetical protein BC1G_07551 [Botryotinia fuckeliana B05.10]
Length = 668
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 182/389 (46%), Gaps = 51/389 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY QVE + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 43 RVIAHLDLDAFYAQVEMVRLGIEEDKPLAVQQWQ-----GLIAINYPARAFGLNRHITIT 97
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 109
EAK++CP + V +A K L YR +++ +
Sbjct: 98 EAKKLCPDLICQHVATWREGDEKWAYHNDAFKNIATHKVSLDPYRLESKRILACIKDCLP 157
Query: 110 -RKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
R E+AS+DEV++DL+ A L E PE D++ E+ L+ K
Sbjct: 158 KHLQRVEKASVDEVFMDLSAQIHATLLERYPELKGPAPYDDLTEQLPLPPTTFLDWKADA 217
Query: 161 ----DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 216
D N+++ D D D + G IV +R + ++ ++TCSAG+A NKM
Sbjct: 218 LVDLDKNEAETD--------DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQNKM 269
Query: 217 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276
L+KL S KP QQT + +++ L K++ LGGK G + V DLL
Sbjct: 270 LSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLV 329
Query: 277 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 336
++L++ G TGTW++N+ RGI +V +R KS S KSF ++ T WL
Sbjct: 330 PVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWL 387
Query: 337 NQLCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 388 RIFAADIQSRLVEEGVLENKRRPKTINLH 416
>gi|380490518|emb|CCF35959.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 640
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 211/468 (45%), Gaps = 55/468 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + + P AV Q+ GLIAV Y AR G+ R
Sbjct: 41 RVIAHVDLDAFYAQCEMVRLGVPKDQPLAVQQWQ-----GLIAVNYPARERGIGRHCTLT 95
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSILARKGRC------------ 114
+A+++CP + V R + +YR N S+ VS+ + C
Sbjct: 96 DARKLCPTLVAQHVATWREGDEKWAYRDDAAANIQSDKVSLDPYRLECRKILAVIKESLP 155
Query: 115 ------ERASIDEVYLDLT-DAAEAMLAETP----PESLDEVDEEALKSHILGLESKDGN 163
E+ASIDEV+LDL+ E +L P P D+ E + L+ +
Sbjct: 156 SDLQKVEKASIDEVFLDLSAQVHEILLRRFPELANPPPYDDPTENLPGPSVAALDWQ--A 213
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D+ + E D D D + G IV +R Q+ + ++TCSAGIA NK+L+KL SG
Sbjct: 214 DALVDLNEEEESMDPDWDDVAILIGSEIVRHVRGQIFERLQYTCSAGIAKNKLLSKLGSG 273
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP QQT + +V L K++ LGGKLG ++ + V +LL ++++
Sbjct: 274 HKKPNQQTVIRNRAVSHFLSGFKFTKIRNLGGKLGENVVSTFNTDAVSELLAIPLEQMKA 333
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G +TG+W+ N RGI EV +R KS S KSF + T WL ++
Sbjct: 334 KLGHDTGSWVHNTIRGIDLSEVNSRTQIKSMLSAKSFRP--YINTPEQAVRWLRIFAADI 391
Query: 344 SERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ 402
RL + + +NKR T+ LH D + K S+ P+ G ++ F L +
Sbjct: 392 FARLVEEGVLENKRRPRTINLHHR------HDGQTK--SRQGPIPQGKTLDEQALFELAK 443
Query: 403 AGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+ + + + T+GS W LS+S ++G I +
Sbjct: 444 SLMNQIM------TEGSI---WPCANLSLSVGGFEDGVTGNMGIGAFL 482
>gi|384246648|gb|EIE20137.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 772
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 179/370 (48%), Gaps = 33/370 (8%)
Query: 34 LRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARG--- 90
+RG P +Q +W+G LIA+ Y AR G+ R MR EA+ +CP+++ V V G
Sbjct: 1 MRGHPWQRLQL-QWEG--LIAINYAARAAGITRHMRVHEARALCPELQCVHVETIGGDEL 57
Query: 91 ---------KADLSSYRNAGSEVVSIL---ARKGRCERASIDEVYLDLTDAAEAMLAE-T 137
KA L YR A E++++L A + E+ASIDEVY+D+T E L E
Sbjct: 58 VDTKDRTKQKACLERYRKACIEILAVLHKAAPQAVIEKASIDEVYMDVTTMVERELRERA 117
Query: 138 PPESLDEVDEEALKSHI--LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
+S E + +H G D V ++ L+ G I L
Sbjct: 118 QADSCREAETGEGGAHDWEAGGSPVDAFSWGGIVLGGGPLDVGSEFERRLSIGANIACRL 177
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R V + FTCSAGIA NK+LAK+AS MNKP QQT VP +V ++ LP+KK++ GG
Sbjct: 178 RGAVRDQLGFTCSAGIAANKLLAKVASAMNKPNQQTIVPPRAVDEMMRDLPLKKLRNFGG 237
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
KLG L +G T G + +L +G + RG S E VQ + L KS
Sbjct: 238 KLGAELA-AMGCVTAGQVSALPHGQLTARFGEERAAGIARAVRGYSDEPVQVKELAKSML 296
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDS 375
+ KSF A A + WL L +ELS RL D + R TL+L +++ S+ D
Sbjct: 297 AAKSF---NATSAPAELDRWLRILADELSHRLTEDGLTHSRAPRTLSL---SYRGSNGDR 350
Query: 376 RKKFPSKSCP 385
SK CP
Sbjct: 351 -----SKCCP 355
>gi|342878015|gb|EGU79426.1| hypothetical protein FOXB_10011 [Fusarium oxysporum Fo5176]
Length = 1648
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 183/382 (47%), Gaps = 38/382 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR +G+ R +
Sbjct: 44 RVIAHIDLDAFYAQCETVRLGIPEDKPLAVQQWQ-----GLIAVNYPAREFGIGRHCNVE 98
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-NAGSEVVS---------ILARK---------- 111
EAK++CP++ + V R D +YR +A + + + + +RK
Sbjct: 99 EAKKLCPELIVQHVATWREGDDKWAYREDAAAHIATDKVSLDHYRLQSRKILACIKEALP 158
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 163
+ E+ASIDEV+LDL+ +L E PE D+ E I L+ +
Sbjct: 159 LDLQKVEKASIDEVFLDLSSQTHLILLERFPELSNPPPYDDPTENLPLPSIAALDWQ--T 216
Query: 164 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S
Sbjct: 217 DALIDLDEEQETVDPDWDDVAILIGSEIVRKVRAEVRQKLGYTCSAGVASNKLLSKLGSA 276
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP +QT V +V + I K++ LGGKLG + + +V +LL ++
Sbjct: 277 YKKPNKQTVVRNRAVSAFMAGFKITKLRNLGGKLGEQIVSTFNTESVIELLDVPLATMKT 336
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G +T W++N RGI EV +R KS S KSF + + WL ++
Sbjct: 337 KLGHDTSFWIYNTIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAADI 394
Query: 344 SERLCSD-LEQNKRIAHTLTLH 364
RL + + +NKR T+ LH
Sbjct: 395 FARLVEEGVLENKRRPRTMNLH 416
>gi|322709529|gb|EFZ01105.1| sister chromatid cohesion protein Eso1 [Metarhizium anisopliae
ARSEF 23]
Length = 651
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 38/386 (9%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR +G+ R
Sbjct: 37 SNPLRVIAHIDLDAFYAQCEMLRLGVPEDKPLAVQQWQ-----GLIAVNYPARAWGIGRH 91
Query: 68 MRGDEAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL- 108
EAK++CP + V +A K L YR ++++++
Sbjct: 92 CNVAEAKKLCPDLIAQHVATWREGDDKWAYRDDAAASIATDKVSLDPYRLESRKILALIR 151
Query: 109 ----ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLES 159
+ E+ASIDEV+LDL+ +L E PE D++ E I L+
Sbjct: 152 DTLPPNLQKVEKASIDEVFLDLSAHVHTILLERFPELSNPPPYDDLAERLPLPSIAALDW 211
Query: 160 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
K D+ + E D D D + G IV +R QV +TCSAGIA+NKM++K
Sbjct: 212 K--ADALVDLDEDQESQDPDWDDVAILIGSEIVRNVRAQVRGRLGYTCSAGIANNKMVSK 269
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 279
L SG KP QT V +V L + K++ LGGKLG + + ++ DLL+ S +
Sbjct: 270 LGSGFKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGKLGERVVSTYSTQSIKDLLEVSLE 329
Query: 280 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 339
++ G TG+WL + RGI EV +R KS S KSF ++ T WL
Sbjct: 330 HMKSKLGDETGSWLHDTLRGIDNSEVSSRTQIKSMLSAKSFRP--SISTEEQALKWLRIF 387
Query: 340 CEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + N+R ++ LH
Sbjct: 388 VGDIFSRLGEEGVLDNRRRPRSINLH 413
>gi|347837334|emb|CCD51906.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 668
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 183/389 (47%), Gaps = 51/389 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY QVE + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 43 RVIAHLDLDAFYAQVEMVRLGIEEDKPLAVQQWQ-----GLIAINYPARAFGLNRHITIT 97
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS---------------ILARKGRC-- 114
EAK++CP + V R + +Y N + ++ ILA C
Sbjct: 98 EAKKLCPDLICQHVATWREGDEKWAYHNDAFKNIATHKVSLDPYRLESKRILACIKDCLP 157
Query: 115 ------ERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 160
E+AS+DEV++DL+ A L E PE D++ E+ L+ K
Sbjct: 158 KHLQIVEKASVDEVFMDLSAQIHATLLERYPELKGPAPYDDLTEQLPLPPTTFLDWKADA 217
Query: 161 ----DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 216
D N+++ D D D + G IV +R + ++ ++TCSAG+A NKM
Sbjct: 218 LVDLDKNEAETD--------DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQNKM 269
Query: 217 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276
L+KL S KP QQT + +++ L K++ LGGK G + V DLL
Sbjct: 270 LSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLV 329
Query: 277 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 336
++L++ G TGTW++N+ RGI +V +R KS S KSF ++ T WL
Sbjct: 330 PVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWL 387
Query: 337 NQLCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 388 RIFAADIQSRLVEEGVLENKRRPKTINLH 416
>gi|358369617|dbj|GAA86231.1| sister chromatid cohesion protein [Aspergillus kawachii IFO 4308]
Length = 670
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 185/413 (44%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + R +P AV Q++ LIA+ Y AR++G+ R +
Sbjct: 43 RVIAHVDLDAFYAQCEMVRLRTPRTVPLAVRQWD-----SLIAINYPARSFGITRMISAA 97
Query: 72 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSI----L 108
EAK++CP I L V R K L YR +++ + L
Sbjct: 98 EAKKLCPDIILQHVATFREGEGGKWAYRNDAFKRMNTDKVCLDPYRAESRKILKVMKEEL 157
Query: 109 ARKGR-------------------CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEA 149
AR R E+AS+DEV++DL+ +L + PE
Sbjct: 158 ARWHRELVGDEQGASTQSTVQHAGLEKASVDEVFIDLSPLVHGVLLQRFPE--------- 208
Query: 150 LKSHILGLESKDGND----SKATVKEW---LCRCDADHR----------DKLLACGVLIV 192
L++ GL+ D T EW C D D D + G IV
Sbjct: 209 LRA---GLQGDDRVTPLPVPPTTALEWDFEDCLIDLDEHETEVDDPDWDDIAILIGSEIV 265
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
+R V ++TCSAG+A NKM+AKL S NKP +QT V +V+ L K++
Sbjct: 266 RSVRAAVWDRLQYTCSAGVAKNKMMAKLGSACNKPNKQTIVRNRAVQRFLSGYKFTKIRM 325
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
LGGKLG + G V DLLK S ++ + +T TWL+ I RG EV +R K
Sbjct: 326 LGGKLGDQVTAMFGTEQVSDLLKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIK 385
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S S KSF ++ +V WL+ ++ RL D + ++KR T+ LH
Sbjct: 386 SMLSAKSFRP--SINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPKTVALH 436
>gi|121713084|ref|XP_001274153.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
gi|119402306|gb|EAW12727.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
Length = 674
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 183/417 (43%), Gaps = 87/417 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + K R P AV Q++ LIA+ Y AR++G+ R M D
Sbjct: 44 RVIAHIDLDAFYAQCEMVRLAKPRETPLAVRQWD-----SLIAINYPARSFGITRMMSAD 98
Query: 72 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSI----L 108
EA++ CP+I L V R K L YR +++ L
Sbjct: 99 EARKHCPEIVLQHVATFREGEGGQWAYRDDAFKNISTDKVCLDPYRAESRKILKFTKEEL 158
Query: 109 AR-------------------KGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEA 149
+R E+ASIDEV++DL+ +L + PE
Sbjct: 159 SRWHADLVDGERGAGAQFQIQPASLEKASIDEVFIDLSPLVYGVLLQRYPE--------- 209
Query: 150 LKSHILGLESKDGNDSK--------ATVKEWL---CRCDADHR----------DKLLACG 188
L + +D + T EW C D D D + G
Sbjct: 210 -------LRAGSQDDDRFTPLPRPPTTALEWNPEDCLIDLDENETEVDDPDWDDIAMLIG 262
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
IV +R V + ++TCS G+A NKM+AKL S NKP +QT V +V+ L
Sbjct: 263 SEIVRSVRKFVWDKLKYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAVQNFLGGYKFT 322
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K++ LGGKLG + G V DLLK S ++L+ +T +WL+ I RG EV R
Sbjct: 323 KIRMLGGKLGDQITASFGTEQVSDLLKVSHEQLRAKLDDDTASWLYGIIRGEDKSEVNPR 382
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
KS S KSF ++ +V + WL ++ RL + + +N+R T++LH
Sbjct: 383 TQIKSMLSAKSFRP--SINSVDQAEKWLRIFAADIYGRLVEEGVLENRRRPRTVSLH 437
>gi|440634992|gb|ELR04911.1| hypothetical protein GMDG_00170 [Geomyces destructans 20631-21]
Length = 641
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 181/395 (45%), Gaps = 65/395 (16%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ LIAV Y AR +G+ R +
Sbjct: 42 RVIAHIDLDAFYAQCEMVRLGVPEDKPLAVQQWQ-----SLIAVNYPARKFGISRMITAK 96
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 110
EA+++CP L V +A K L YR ++++ +
Sbjct: 97 EARKLCPDAILQHVATWKEGDVKWAYHKDASANMATHKVSLDPYRLESRKILACMKECLP 156
Query: 111 --KGRCERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDG 162
R E+A IDEV+LDL+ +L + +PP+ L E L L
Sbjct: 157 PDLQRVEKAGIDEVFLDLSAQVHTILLDRYPELSSPPKDLSE---------FLPL----- 202
Query: 163 NDSKATVKEW----LCRCDADHRDKL--------LACGVLIVTELRMQVLKETEFTCSAG 210
TV +W L DA + + G IV ++R V ++ ++TCS G
Sbjct: 203 --PPTTVLDWQADALVDLDASETEDDDPDWDDVAILLGSEIVRDVRAAVSEQLKYTCSGG 260
Query: 211 IAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTV 270
IAHNKML+KL S KP QQT + +++ L K++ LGGKLGT + + TV
Sbjct: 261 IAHNKMLSKLGSAHRKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGTQIVDTFETDTV 320
Query: 271 GDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVA 330
LL+ ++L++ G TG+W++ RGI EV +R KS S KSF ++ +
Sbjct: 321 SGLLEVPVERLKQKLGDETGSWVYQTIRGIDQSEVNSRTQIKSMLSAKSFQP--SINSRE 378
Query: 331 SVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ RL + + +NKR T+ LH
Sbjct: 379 QASRWLRIFVGDIYARLVEEGVLENKRRPKTINLH 413
>gi|115400311|ref|XP_001215744.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191410|gb|EAU33110.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1077
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 190/420 (45%), Gaps = 85/420 (20%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IAH+DLD FY Q E + R P AV Q++ LIA+ Y AR +G+ R
Sbjct: 451 ASPLRVIAHIDLDAFYAQCEMVRLQTPREQPLAVRQWD-----SLIAINYPARAFGITRM 505
Query: 68 MRGDEAKEVCPQIELVQVPVAR----GKADL--SSYRNAGSEVVSI-------------- 107
+ EAK++CP+I L V R GK ++RN G++ V +
Sbjct: 506 ITAAEAKKLCPEIVLQHVATFREGEGGKWAYREDAFRNIGTDKVCLDPYRMESRKILQVM 565
Query: 108 ---LAR-------------------KGRCERASIDEVYLDLTDAAEAMLAETPPESLDEV 145
L+R + E+ASIDEV++DL+ +L + PE
Sbjct: 566 KEELSRWHADLLDDERGLGSQFQVEQAALEKASIDEVFIDLSPLVYGVLLQRYPE----- 620
Query: 146 DEEALKSHILGLESKDGNDSKA-------TVKEWLCR-C------------DADHRDKLL 185
L++ + G+D A T EW C D D D +
Sbjct: 621 ----LRA------APQGDDKFASLPRPPTTALEWNAEDCLVDLDKTETEVDDPDWDDIAM 670
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
G +V LR + + ++TCSAGIA NKM+AKL S NKP +QT V +V+ L
Sbjct: 671 LVGSEVVRSLRTALWNKLQYTCSAGIARNKMMAKLGSSSNKPNKQTIVRNRAVQNFLGGF 730
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
K++ LGGKLG + G VGDLL+ ++L+ +T WL+ I RG EV
Sbjct: 731 KFTKIRMLGGKLGDQVTALFGTEQVGDLLQVPLEQLRAKLDDDTALWLYGIIRGEDRSEV 790
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
R KS S KSF ++ +V + WL ++ RL D + +N+R T+ LH
Sbjct: 791 NPRTQIKSMLSAKSFRP--SINSVEQAEKWLRIFAADIYGRLVEDGVLENRRRPRTIALH 848
>gi|402084841|gb|EJT79859.1| sister chromatid cohesion protein Eso1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 785
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 146/472 (30%), Positives = 213/472 (45%), Gaps = 58/472 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIAV Y AR +G+ R D
Sbjct: 50 RVIAHIDLDAFYAQCETVRLGIPEDKPLAVQQWQ-----GLIAVNYPARKFGINRHCPID 104
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC-- 114
EA+++CP++ V R D +YR N G++ VS ILA C
Sbjct: 105 EARKLCPELICQHVATWREGDDKWAYRDDAAANIGTDKVSLDPYRLQSRRILALIKECLP 164
Query: 115 ------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEE-------ALKSHILGLESKD 161
E+AS+DEV++DL+ +L E PE + S +L +S +
Sbjct: 165 PTQCKVEKASVDEVFIDLSANVHTVLLERFPELAATAPRQDPFENLPPPSSTVLDWQSDN 224
Query: 162 GNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 221
D E D D D +L IV +R+ V + +TCSAG+A NK+L+KL
Sbjct: 225 LVDLDEVEAE---TDDPDWDDVVLLLASEIVRNIRLAVRERLGYTCSAGVASNKLLSKLG 281
Query: 222 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 281
S KP QQT + SV L L K++ LGGKLG + G +V +LL + L
Sbjct: 282 SAHRKPNQQTVIRNRSVHHFLSDLKFTKIRNLGGKLGEQVVEAFGSDSVSELLAAPLELL 341
Query: 282 QESYGFNTGTWLWNIARG-ISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQL 339
+ G +GTW+++I RG +GE V +R KS S KSF P + AS WL
Sbjct: 342 KAKLGAESGTWVYHIIRGDDAGEPVNSRTQIKSMLSAKSFRPSINRPEQAAS---WLRIF 398
Query: 340 CEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTF 398
++ RL + + +NKR T+ LH + S+SC + G A ++ +
Sbjct: 399 AADIFARLIEEGVLENKRRPRTMNLHHRNVGQTR--------SRSCQIPQGKALDEQVLY 450
Query: 399 NLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
L Q LR+ + G + W LS+ + ++G I +
Sbjct: 451 ELAQTLLRQIVAEAGSE------RAWSCDNLSLQVAGFEDGITGNMGIGGFL 496
>gi|145237696|ref|XP_001391495.1| DNA polymerase eta [Aspergillus niger CBS 513.88]
gi|134075969|emb|CAK48163.1| unnamed protein product [Aspergillus niger]
gi|350635582|gb|EHA23943.1| hypothetical protein ASPNIDRAFT_48454 [Aspergillus niger ATCC 1015]
Length = 670
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 186/401 (46%), Gaps = 55/401 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R +P AV Q++ LIA+ Y AR++G+ R +
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLRTPRTVPLAVRQWD-----SLIAINYPARSFGITRMISAS 97
Query: 72 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSI----L 108
EAK++CP+I L V R K L YR +++ + L
Sbjct: 98 EAKKLCPEIVLQHVATFREGEGGKWAYRNDAFKRMNTDKVCLDPYRAESRKILKVMKEEL 157
Query: 109 ARKGR-------------------CERASIDEVYLDLTDAAEAMLAETPPESLDEV--DE 147
+R R E+AS+DEV++DL+ +L + PE E+ D+
Sbjct: 158 SRWQRELVGGEHGAGAQSPIQHAGLEKASVDEVFIDLSSLVHGVLLQRYPELRAELQGDD 217
Query: 148 EALKSHILGLESKDGN--DSKATVKEWLCRCD-ADHRDKLLACGVLIVTELRMQVLKETE 204
+ + + N D + E D D D + G IV +R V +
Sbjct: 218 RVTPLPVPPTTALEWNSEDCLVDLDENETEVDDPDWDDIAMLIGSEIVRSVRAAVWDRLQ 277
Query: 205 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 264
+TCSAG+A NKM+AKL S NKP +QT V +V+ L K++ LGGKLG +
Sbjct: 278 YTCSAGVAKNKMMAKLGSSCNKPNKQTIVRNRAVQRFLGGYKFTKIRMLGGKLGDQVTAM 337
Query: 265 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 324
G V DL+K S ++ + +T TWL+ I RG EV +R KS S KSF
Sbjct: 338 FGTEQVSDLIKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIKSMLSAKSFRP-- 395
Query: 325 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
++ +V WL+ ++ RL D + ++KR T+ LH
Sbjct: 396 SINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPKTVALH 436
>gi|302419901|ref|XP_003007781.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
gi|261353432|gb|EEY15860.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
Length = 631
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 180/365 (49%), Gaps = 25/365 (6%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+IAH+DLD FY Q E + P AV Q+ GLIA+ Y AR++G+ R
Sbjct: 38 SSPLRVIAHIDLDAFYAQCEMVRLDTPEDQPLAVQQWQ-----GLIAINYPARSFGIGRH 92
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
EA+++CP + V R D +YR+ + ++ ++ S+D L +
Sbjct: 93 CTLAEARKLCPDLIAQHVATWREGDDKWAYRDDAAANIT-------SDKVSLDPYRLQ-S 144
Query: 128 DAAEAMLAETPPESLDEVDEEA-------LKSHILGLESKDGNDSKATVKEWLCRCDADH 180
A++ ET P L +V++ + L ++ L+ + D+ + E D D
Sbjct: 145 RKILALIKETLPSDLQKVEKASIDEVFCYLGPPVVALDWQ--ADALIDLDEDAENQDPDW 202
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D + G I+ +R ++ + +TCSAGIA+NKML+KL S KP QQT + +V+
Sbjct: 203 DDVAILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSKLGSAHKKPNQQTVIRNRAVQQ 262
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L K++ LGGKLG ++ N TV DLL D+++ G TG W++N RGI
Sbjct: 263 FLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLDQMKARLGDETGIWVYNTIRGI 322
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAH 359
EV +R KS S KSF ++ T WL ++ RL + + +NKR
Sbjct: 323 DQSEVNSRTQIKSMLSAKSFRP--SIHTPDQGNRWLRIFVADIFSRLVEEGVLENKRRPK 380
Query: 360 TLTLH 364
T+ LH
Sbjct: 381 TINLH 385
>gi|389646325|ref|XP_003720794.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|86196643|gb|EAQ71281.1| hypothetical protein MGCH7_ch7g688 [Magnaporthe oryzae 70-15]
gi|351638186|gb|EHA46051.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|440479415|gb|ELQ60186.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae P131]
Length = 668
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 200/430 (46%), Gaps = 49/430 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I+H+DLD FY Q E + P AV Q+ GLIAV Y AR +G+ R D
Sbjct: 48 RVISHIDLDAFYAQCEMVRLGVDEDRPLAVQQWQ-----GLIAVNYPARKFGISRHCAID 102
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC-- 114
+A ++CP++++ V R + +YR N ++ VS ILA C
Sbjct: 103 DALKLCPELQVQHVATWREGDNTWAYRGDAAANIATDKVSLDPYRLQSRTILALIKECLP 162
Query: 115 ------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 168
E+ASIDEV++DL+ + L E PE L A L L D +A
Sbjct: 163 PHQCKVEKASIDEVFIDLSANVHSKLIERFPE-LASPPPGADAQARLPLPPVSALDWQAD 221
Query: 169 VKEWLCRC-----DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
L D D D L I ++R + ++TCSAG+A NK+L+KL S
Sbjct: 222 ALIELDETETETDDPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGSA 281
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
KP QQT + +V+ L K++ LGGKLG + G +V DLL+ D+L+
Sbjct: 282 HKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDLLEVPLDQLKL 341
Query: 284 SYG-FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
G +T W++N RGI EV +R KS S KSF ++ +V WL +
Sbjct: 342 RLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSAKSFRP--SIHSVDQANKWLRIFSAD 399
Query: 343 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT--FN 399
+ RL + + +NKR T+ LH S ++SCP+ G ++ +D+ +
Sbjct: 400 IFSRLVEEGVLENKRRPKTMNLHHRHNGQSK--------ARSCPIPQGV-RVLDDSVLYE 450
Query: 400 LFQAGLREFL 409
L Q LR+ +
Sbjct: 451 LAQNLLRQIV 460
>gi|348670497|gb|EGZ10319.1| hypothetical protein PHYSODRAFT_522191 [Phytophthora sojae]
Length = 527
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 178/392 (45%), Gaps = 88/392 (22%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ R+I H+DLDCFY QVEQR+ G P AV Q+ G L+AV Y+AR +GV+R
Sbjct: 6 STPTRVIIHLDLDCFYAQVEQRRLKIPDGQPVAVQQW-----GSLLAVNYDARKFGVERG 60
Query: 68 MRGDEAKEVCPQIELVQVPV-------------ARGKADLSSYRNAGSEVVSILARKGR- 113
D+AK+ CPQI L V KA L YR A E+ +IL
Sbjct: 61 DFVDDAKKKCPQIHLPHVDTLGENRKPGQLFDRTHQKAILRRYRVASREIFAILGSMAPI 120
Query: 114 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWL 173
E+ASIDE ++D+T+ A LA+T
Sbjct: 121 IEKASIDEAFMDVTEMATQRLAQTVN---------------------------------F 147
Query: 174 CRCDADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
C+ A+H K L C G +I E+R + + +TCS G+A NK+LAKLAS +NKP Q
Sbjct: 148 CQDPANHDTKRLLCIGAVISREIRQAIYSKLGYTCSTGVAGNKLLAKLASPLNKPNGQVV 207
Query: 233 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN------ELGVTTVGDLLKFSEDKLQESYG 286
V V L+ SLP++K++ LGGKLG L+ +L T +E L + G
Sbjct: 208 VAPRFVADLMKSLPMRKVRGLGGKLGKQLETAKDAFKKLSAHTFLQRCGLAE--LTKHVG 265
Query: 287 FNTGTWLWNIARGISGEE------VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 340
T ++ I +G G E VQ ++L G +W+ LC
Sbjct: 266 QETAAYVHQICQGDDGNEPVEEKKVQVKML----GC-----------------YWVRLLC 304
Query: 341 EELSERLCSDLEQNKRIAHTLTLHASAFKSSD 372
EE+ R + +NKR LT+ + K D
Sbjct: 305 EEMVMRCEDERVENKRFPSQLTIQFTRAKPGD 336
>gi|242790335|ref|XP_002481538.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718126|gb|EED17546.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 658
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 179/391 (45%), Gaps = 64/391 (16%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+IAH+DLD FY Q E + R P AV Q+ LIA+ Y AR +G+ R
Sbjct: 38 SSPLRVIAHIDLDAFYAQCEMVRLGTPRDTPLAVQQWE-----SLIAINYAARPFGITRM 92
Query: 68 MRGDEAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSIL 108
+ EAK+ CP++ L V R K L YR +++S +
Sbjct: 93 LSATEAKKRCPELVLQHVATFREGEGGTWAYRDDASKRIKTDKVSLDPYRAQSRKILSTI 152
Query: 109 ARK---------------------GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDE 147
+ + E+ASIDEV++DL+ A+L + PE L +
Sbjct: 153 KEEVSRQRDQILNSKDVVPLEFQGAKVEKASIDEVFIDLSSLVYAILYQRYPE-LRKPHS 211
Query: 148 EALKSHIL------GLE--SKDGN---DSKATVKEWLCRCDADHRDKLLACGVLIVTELR 196
+ K+ L LE S+DG D + T ++ D D D + G I+ +R
Sbjct: 212 TSDKTTRLPSPPTTALEWSSEDGLVDLDEQETEED-----DPDWDDVAMLIGAEIIRSIR 266
Query: 197 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 256
+ + +TCSAGIA NKM++KL S NKP +QT + +++ L +++ LGGK
Sbjct: 267 SAIWDKLSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQNFLGGFQFTRIRMLGGK 326
Query: 257 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 316
LG ++ E G V +LL S ++ + +T WL+NI RGI EV R KS S
Sbjct: 327 LGEQIRAEFGTEQVKELLNISVEQFKAKLDDDTAVWLYNIIRGIDDSEVNTRTQIKSMLS 386
Query: 317 GKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KSF ++ + + WL +L L
Sbjct: 387 AKSFRP--SINSADQARKWLRIFAADLYNSL 415
>gi|168024165|ref|XP_001764607.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684185|gb|EDQ70589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 179/386 (46%), Gaps = 62/386 (16%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
++ H DLDCFY VEQ + P AV Q++ GLIAV Y AR G+ R R E
Sbjct: 9 VVLHADLDCFYAAVEQVRLGIPTEQPLAVQQWD-----GLIAVNYAARAVGIVRHERVSE 63
Query: 73 AKEVCPQIELVQV---------------PVARGKADLSSYRNAGSEVVSILARKGR-CER 116
A CP + LV V P KA L YR A ++V +I R + CER
Sbjct: 64 ALRKCPDLHLVHVETIGGDKPGTPESLGPRGNAKASLERYRQASAKVFNIFRRYSKLCER 123
Query: 117 ASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 176
ASIDE YLD+++ E ML + ++D E+ + H L LE + V L
Sbjct: 124 ASIDEAYLDVSEQVEEMLEK-------DMDWES-ELHRL-LEPTGSETTSKGVPVMLIEG 174
Query: 177 DA----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
+ + D+ L G +I +R V E +T S
Sbjct: 175 GSLAIYNAYDRRLLAGSIIADRMRASVRNELGYTIS-----------------------V 211
Query: 233 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 292
+P +V GL+ +LP+KK+K LGGKLG + + G TT G+ + L +G GT+
Sbjct: 212 IPPRAVPGLMKALPLKKIKLLGGKLGEEMTKKWGCTTAGEAQQIPHAALVACFGDRLGTY 271
Query: 293 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 352
W +G+ E+VQ + L KS + KSF A+ +A ++ WL+ L +L+ R+ D E
Sbjct: 272 AWKAVQGLKAEQVQVKDLVKSMLASKSF---GAINELAGIRRWLSVLSHDLAIRMSRDFE 328
Query: 353 QNKRIAHTLTLH--ASAFKSSDSDSR 376
N+R L+ + FK+S SR
Sbjct: 329 MNQRQPKVFQLYYRSGKFKNSADHSR 354
>gi|378730434|gb|EHY56893.1| DNA polymerase eta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 663
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 208/475 (43%), Gaps = 68/475 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA +D D FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 51 RVIALIDYDAFYAQCEMVRLGVSETQPLAVQQWQ-----GLIAINYPARAFGLNRHVTVT 105
Query: 72 EAKEVCPQIELVQVPVAR------------------GKADLSSYRNAGSEVVSILAR--- 110
EAK CP++ + V R K L YR +++L
Sbjct: 106 EAKTKCPELVVQHVATWREGDDKWAYRDDAARHIHTDKVSLDPYRLESRRTLALLKEILP 165
Query: 111 ---KGRCERASIDEVYLDLTDAAEAMLAETPPE----SLDEVDE-------EALKSHILG 156
+ E+ASIDEV+LDL+ +L E PE D+ E AL H
Sbjct: 166 PPPVQKVEKASIDEVFLDLSAQIHQILLERYPELRYAPYDDPTEPLPLPPSTALNWHADA 225
Query: 157 LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 216
L D +++ +W + G +V +R + ++TCSAGIA NKM
Sbjct: 226 LVDLDLAETEDDDPDWDDVA--------MNIGAEVVRGVRQTIYDRLKYTCSAGIARNKM 277
Query: 217 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276
+AKL +G KP QQT V +V+ L K++ LGGKLG + + G V +LL
Sbjct: 278 MAKLGAGYKKPNQQTIVRNRAVQHFLSGFKFTKIRNLGGKLGDHVVDTFGTDEVTELLAI 337
Query: 277 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 336
++L+ G +TGTWL+ I RG EV +R KS S KSF ++ TV WL
Sbjct: 338 PIEQLKARLGDDTGTWLYGIIRGEDNSEVNSRTQIKSMLSAKSFRP--SINTVEQANRWL 395
Query: 337 NQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQE 395
++ RL + + +NKR T+TLH + +R SK P+ G KI E
Sbjct: 396 RIFVADIYARLVEEGVTENKRRPKTITLH----HRQGAQTR----SKQLPIPQGK-KIDE 446
Query: 396 DTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+T LF+ + LG V + W LS+S ++G I +
Sbjct: 447 NT--LFELA-KTLLGQVVVDGR-----AWPCANLSLSVGGFEDGVAGNKGIDTFL 493
>gi|451847016|gb|EMD60324.1| hypothetical protein COCSADRAFT_39969 [Cochliobolus sativus ND90Pr]
Length = 716
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 179/392 (45%), Gaps = 58/392 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPSKPLAVQQWQ-----GLIAINYPAREFGLSRHVTST 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 109
EA + CP + L V +A K L YR +++ +
Sbjct: 99 EALKQCPDLILQHVATWKEGDENWAYHENSFRDMATHKVSLDPYRKESRKILKCIKDILP 158
Query: 110 -RKGRCERASIDEVYLDLTDAAEAMLAET------------PPESLDEVDEEALK---SH 153
++ R E+ASIDEV++DL+ +L E P E L +V L
Sbjct: 159 EKEQRVEKASIDEVFMDLSAQVHTILLERYPELRGPAPYDDPTEPLPKVPTTVLDWAADA 218
Query: 154 ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
++G +DG D D D D + IV ++R + +TCS G+A
Sbjct: 219 LVGTGEEDGEDR-----------DPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGGVAR 267
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NKMLAKL SG KP QQT + +VK L + K++ LGGKLG + + G V DL
Sbjct: 268 NKMLAKLGSGYKKPNQQTVIRNRAVKNFLSDMKFTKIRMLGGKLGDEVVSTFGTDKVRDL 327
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
++ D+L++ G +TG+WL++ RG EV R KS S KSF ++ +
Sbjct: 328 MEQPLDQLKK-LGEDTGSWLYSTIRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEQGV 384
Query: 334 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ R + + +NKR ++ LH
Sbjct: 385 RWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|402224670|gb|EJU04732.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 604
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 201/439 (45%), Gaps = 68/439 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGL-PTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+IA +D D FY EQ + GL P + +W+G LIA+ Y AR YG+ R M
Sbjct: 36 RVIALIDSDAFYAACEQVRL----GLNPEKPIAVQQWQG--LIAINYPARKYGITRLMSV 89
Query: 71 DEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---K 111
EA + CP++ V V R K L YR +V+ + +
Sbjct: 90 TEATKKCPELICVHVMTYREGSREPGYFPNAKPSTHKVSLDHYRRESIKVLRVFQSTLPE 149
Query: 112 GRCERASIDEVYLDLTDAA-EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK---A 167
ERASIDE + DLT E +L P L +V +A DG DS A
Sbjct: 150 AEIERASIDEAFFDLTAPVREEILRRYP--YLRDVPSDA----------TDGMDSPLPPA 197
Query: 168 TVKEWLCRCDA---------------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 212
V +W R + D LA G +V ++R +V K+ +T SAGIA
Sbjct: 198 PVIDWTGRGNVLAIREGEEAGVDGQGTWADVALALGAEMVHKVRQEVHKQLGYTTSAGIA 257
Query: 213 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 272
NK +AKL + KP QT + +++ L+ +P KK++ LGGKLG +L + T+GD
Sbjct: 258 RNKTMAKLCASCKKPFGQTVLRDAAIPLYLNPMPFKKIRFLGGKLGDALASAYDAKTIGD 317
Query: 273 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 332
LL S++ +Q+ +G W+++I RG EV+ R KS + K+ A+KT +
Sbjct: 318 LLSVSKEDMQQQFG-EESYWVYDILRGRDYAEVKERTGVKSMMASKNVRP--AIKTFSDG 374
Query: 333 QHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA 391
QHWL L ELS RL + + + TL LH K R S+ CP + A
Sbjct: 375 QHWLRVLSAELSLRLEEARDLSPAVWPKTLVLH---IKQGFDAPR----SRQCPFPFTNA 427
Query: 392 KIQEDTFNLFQAGLREFLG 410
E L + LRE +G
Sbjct: 428 LSDEYIARLGERLLRELVG 446
>gi|396501078|ref|XP_003845891.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
gi|312222472|emb|CBY02412.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
Length = 731
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 181/392 (46%), Gaps = 58/392 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 45 RVIAHVDLDAFYAQCETVRLGIDPNKPLAVQQWQ-----GLIAINYPARAFGLSRHVTST 99
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 109
EA + CP++ L V ++ K L YR A +++ +
Sbjct: 100 EALKQCPELILQHVATWKEGDEKWAYHENSFKDMSTHKVSLDPYRQASRKILQCIKEALP 159
Query: 110 -RKGRCERASIDEVYLDLTDAAEAML------------AETPPESLDEVDEEAL---KSH 153
++ R E+ASIDEV++DL+ +L E P E L +V AL
Sbjct: 160 EKEQRVEKASIDEVFMDLSAQVHTILLDRYPELRGPAPYEDPTERLPKVPTTALDWAADA 219
Query: 154 ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
++ +DG D+ D D D + IV E+R + +TCSAG+A
Sbjct: 220 LVETGEEDGEDA-----------DPDWDDVCMVIASEIVREVRRHIKDTLGYTCSAGVAR 268
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NKML+KL SG KP QQT + +VK L + K++ LGGKLG + G V DL
Sbjct: 269 NKMLSKLGSGYKKPNQQTVIRNRAVKHFLGDMKFTKIRMLGGKLGDEVVAMFGTDKVRDL 328
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+ ++L++ G +TGTWL++ RG EV R KS S KSF ++ +
Sbjct: 329 MDQPLEQLKK-LGDDTGTWLYSTIRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEQGV 385
Query: 334 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ R + + +NKR T+ LH
Sbjct: 386 RWLRIFVADIFSRCVEEGVLENKRRPKTINLH 417
>gi|452002715|gb|EMD95173.1| hypothetical protein COCHEDRAFT_1129437 [Cochliobolus
heterostrophus C5]
Length = 717
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 182/392 (46%), Gaps = 58/392 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + L P+ + +W+G LIA+ Y AR +G+ R +
Sbjct: 44 RVIAHVDLDAFYAQCETVR---LGIDPSKPLAVQQWQG--LIAINYPAREFGLSRHVTST 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 109
EA + CP + L V +A K L YR +++ +
Sbjct: 99 EALKQCPDLILQHVATWKEGDENWAYHENSFRDMATHKVSLDPYRKESRKILKCIKDMLP 158
Query: 110 -RKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLE----- 158
++ R E+ASIDEV++DL+ +L E PE D+ E K L+
Sbjct: 159 EKEQRVEKASIDEVFMDLSAQVHTILLERYPELRGPAPYDDPTEPLPKVPTTVLDWAADA 218
Query: 159 -----SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+DG D D D D +A IV ++R + +TCS G+A
Sbjct: 219 LVETGEEDGEDR-----------DPDWDDVCMAIASEIVRDVRKHIKDALGYTCSGGVAR 267
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NKMLAKL SG KP QQT + +VK L + K++ LGGKLG + + G V DL
Sbjct: 268 NKMLAKLGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVSIFGTDKVKDL 327
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
++ D+L++ G +TG+WL++I RG EV R KS S KSF ++ +
Sbjct: 328 IEQPLDQLKK-LGDDTGSWLYSIIRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEQGV 384
Query: 334 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ R + + +NKR ++ LH
Sbjct: 385 RWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|226287048|gb|EEH42561.1| DNA polymerase eta [Paracoccidioides brasiliensis Pb18]
Length = 675
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 212/503 (42%), Gaps = 93/503 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + P AV Q+ LIAV Y AR + + R +
Sbjct: 25 RVVAHIDLDAFYAQCEMVRLNTPLTQPLAVQQWE-----SLIAVNYPARAFNITRMLTAA 79
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSIL---- 108
EA++ CPQ+ V +A K L YR +++ ++
Sbjct: 80 EARKRCPQLITQHVATFREGEGEQWKYRDDAAECIATDKVSLEPYRMESRKILEVIKTVL 139
Query: 109 ---------------ARKG-------RCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 146
A KG R E+A IDEV++DL+ L E P +
Sbjct: 140 TERAEEVIRDVGVEGAAKGPGMEQLVRVEKAGIDEVFVDLSALVYETLLEWYPMLREGEV 199
Query: 147 EEALKSHILGLESKDGNDSKATVKEW-----LCRCDA--------DHRDKLLACGVLIVT 193
E + + GL + TV EW L D D D + G IV
Sbjct: 200 ELDVNERLPGLPT--------TVLEWGKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVR 251
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R + + ++TCSA IA NKM+AKL S NKP +QT V +++ L +++ L
Sbjct: 252 SVRAAIWERLKYTCSAAIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRML 311
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + G VGDLL+ ++L+ G +TGTWL+ I RG EV R KS
Sbjct: 312 GGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSMRTKIKS 371
Query: 314 HGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSS 371
S KSF PG +K+ + WL ++ RL + + +NKR +T+H
Sbjct: 372 MLSTKSFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIHHR----- 423
Query: 372 DSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV 431
++ + S+ P+ G F+L + L + + + W LS+
Sbjct: 424 ---TKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI---------WPCANLSL 471
Query: 432 SASKIVPVLSGTCSIMKYFNGPD 454
+ S L+G S+ +F D
Sbjct: 472 NVSGFEDGLTGNRSLDSFFGRGD 494
>gi|358385031|gb|EHK22628.1| hypothetical protein TRIVIDRAFT_191350 [Trichoderma virens Gv29-8]
Length = 654
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 185/383 (48%), Gaps = 40/383 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + P AV Q+ GLIAV Y AR + + R
Sbjct: 40 RVVAHIDLDAFYAQCEMIRLGVPEDKPLAVQQWQ-----GLIAVNYPARKWEIGRHCNIT 94
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----LARK---------- 111
EAK++CP++ V R D +YR N ++ VS+ +RK
Sbjct: 95 EAKKLCPELIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILALVKDSLP 154
Query: 112 ---GRCERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDG 162
+ E+ASIDEV+LDL+ + L +PP S D + S L+ +
Sbjct: 155 KDLQKVEKASIDEVFLDLSAQVHSELLRRFPELSSPPPSGDVAESLPFPS-AAALDWR-- 211
Query: 163 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
ND+ + E D D D ++ G IV +R ++ ++ +TCSAGIA+NK+++KL S
Sbjct: 212 NDNLVVLDEDQETLDPDWDDVVILLGSEIVRGVRAEIREKLGYTCSAGIANNKLVSKLGS 271
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282
KP QT V +V L + + KM+ LGGKLG + + G +V +L D+++
Sbjct: 272 AFKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSTFGTESVKELRDIPLDQIK 331
Query: 283 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
G T WL+N RGI EV +R KS S KSF ++KT WL +
Sbjct: 332 AKLGDETAVWLYNTIRGIDLSEVNSRTQIKSMLSAKSFRP--SIKTPEQGIKWLRIFAGD 389
Query: 343 LSERLCSD-LEQNKRIAHTLTLH 364
+ RL + + ++KR T+ LH
Sbjct: 390 IYSRLVEEGILEHKRWPRTINLH 412
>gi|225683428|gb|EEH21712.1| sister chromatid cohesion protein Eso1 [Paracoccidioides
brasiliensis Pb03]
Length = 681
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 211/503 (41%), Gaps = 93/503 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + P AV Q+ LIAV Y AR + + R +
Sbjct: 29 RVVAHIDLDAFYAQCEMVRLNTPLTQPLAVQQWE-----SLIAVNYPARAFNITRMLTAA 83
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSIL---- 108
EA++ CPQ+ V +A K L YR +++ ++
Sbjct: 84 EARKRCPQLITQHVATFREGEGEQWKYRDDAAECIATDKVSLEPYRMESRKILEVIKTVL 143
Query: 109 ---------------ARKG-------RCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 146
A KG R E+A IDEV++DL+ L E P +
Sbjct: 144 TERAEKVMRDVGVEGAAKGPGTEQLVRVEKAGIDEVFVDLSALVYETLLEWYPMLREGEV 203
Query: 147 EEALKSHILGLESKDGNDSKATVKEW-----LCRCDA--------DHRDKLLACGVLIVT 193
E + + G TV EW L D D D + G IV
Sbjct: 204 ELDVNERLPG--------PPTTVLEWGKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVR 255
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R + + ++TCSAGIA NKM+AKL S NKP +QT V +++ L +++ L
Sbjct: 256 SVRAAIWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRML 315
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + G VGDLL+ ++L+ G +TGTWL+ I RG EV R KS
Sbjct: 316 GGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSMRTKIKS 375
Query: 314 HGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSS 371
S KSF PG +K+ + WL ++ RL + + +NKR +T+H
Sbjct: 376 MLSTKSFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIHHR----- 427
Query: 372 DSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV 431
++ + S+ P+ G F+L + L + + + W LS+
Sbjct: 428 ---TKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI---------WPCANLSL 475
Query: 432 SASKIVPVLSGTCSIMKYFNGPD 454
+ S L+G S+ +F D
Sbjct: 476 NVSGFEDGLTGNRSLDSFFGRGD 498
>gi|340519771|gb|EGR50009.1| predicted protein [Trichoderma reesei QM6a]
Length = 661
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 206/472 (43%), Gaps = 53/472 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIA+ Y AR + + R
Sbjct: 40 RVIAHIDLDAFYAQCEMVRLGIPEDKPLAVQQWQ-----GLIAINYPARKWQIGRHCDVA 94
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC-- 114
EAK++CP++ V R D +YR N ++ VS ILA C
Sbjct: 95 EAKKLCPELIAQHVATWREGDDKWAYREDAAANIATDKVSLDPYRLQSRRILALIKDCLP 154
Query: 115 ------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG----ND 164
E+ASIDEV+LDL+ L PE L + L S D
Sbjct: 155 KDLQKVEKASIDEVFLDLSAQVHTELLRRFPE-LSTAPSSGDSAQHLPFPSAAALDWQTD 213
Query: 165 SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 224
+ ++E D D D ++ G IV +R Q+ + +TCSAGIA++K+++KL S
Sbjct: 214 NLVVLEEEQEALDPDWDDVVMLVGSEIVRGVRAQIRERLGYTCSAGIANSKLVSKLGSAY 273
Query: 225 NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 284
KP QT V +V L + + KM+ LGGKLG + + +V +L D+++
Sbjct: 274 KKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSIFNTESVKELRDIPLDQIKAK 333
Query: 285 YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 344
G T WL+N RG+ EV +R KS S KSF ++ T WL ++
Sbjct: 334 LGDETAVWLYNTIRGVDHSEVNSRTQIKSMLSAKSFRP--SINTPEQAIKWLRIFAGDIY 391
Query: 345 ERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 403
RL + + ++KR T+ LH + SK P+ G A ++ FNL +
Sbjct: 392 SRLVEEGILEHKRWPRTINLHHRHAGQTR--------SKQSPISPGKALDEQALFNLAKD 443
Query: 404 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDK 455
L + + V W LS+S + G +I +F D+
Sbjct: 444 LLHQIMAEGDV---------WPCANLSLSVGGFEEGVKGNMAIGAFFKKRDE 486
>gi|345566460|gb|EGX49403.1| hypothetical protein AOL_s00078g436 [Arthrobotrys oligospora ATCC
24927]
Length = 776
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 173/379 (45%), Gaps = 44/379 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IAH+DLD FY Q E + P AV Q++ AV Y AR++G+ R
Sbjct: 34 NSPLRVIAHIDLDAFYAQCEMVRLGVPEDQPLAVQQWD--------AVNYPARSFGITRM 85
Query: 68 MRGDEAKEVCPQIELVQVPVAR--------------------GKADLSSYRNAGSEVVSI 107
+AK CP + V V R K L YR ++++I
Sbjct: 86 RNVADAKRKCPTLMAVHVATWRVQNDTAVMGYHDMTNASISTDKVSLDHYRRESKKILAI 145
Query: 108 LARKG--RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSH-----------I 154
R+G + E+AS+DE +LDL+ L E E L VD E + + +
Sbjct: 146 F-REGCPKVEKASVDESFLDLSGLVFGKLLERFEEELGVVDGEIVPPYGDTTERLRMPEV 204
Query: 155 LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 214
G+E + + E D D ++ IV ++R +V + +TCSAGI+ N
Sbjct: 205 AGVEWGNSHLVDLDDGEEGEEEPIDWDDIIMGIAAEIVADIRGEVRRRLGYTCSAGISRN 264
Query: 215 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 274
KMLAKL SG KP QQT V +V L S+ ++ LGGKLG+ + G V ++L
Sbjct: 265 KMLAKLGSGYKKPNQQTIVRNRAVTHFLSSMKFTSIRNLGGKLGSEVATAFGTENVSEVL 324
Query: 275 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 334
+ + G +TGTWL+ RGI EV R KS S KSF A+ ++
Sbjct: 325 SVPLETFKAKLGDDTGTWLYKTIRGIDTTEVLTRTDIKSMLSAKSFTP--AITRYQQGEN 382
Query: 335 WLNQLCEELSERLCSDLEQ 353
WL C ++ R+ + ++
Sbjct: 383 WLKVFCADIVSRVNEEADE 401
>gi|301093411|ref|XP_002997552.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110570|gb|EEY68622.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 525
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 181/373 (48%), Gaps = 67/373 (17%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+SS +R+I H+DLDCFY QVEQR+ G P AV Q+ G L+AV Y+AR +GV+R
Sbjct: 3 NSSTSRVIIHLDLDCFYAQVEQRRLHIPDGQPVAVQQW-----GSLLAVNYDARKFGVER 57
Query: 67 SMRGDEAKEVCPQIELVQVPV-------------ARGKADLSSYRNAGSEVVSIL-ARKG 112
D+AK+ CPQI L V KA L YR A ++ +IL +
Sbjct: 58 GDFIDDAKKKCPQIHLPHVDTLGKNCKPGQLFDRTHQKAILRRYRIASRDIFAILGSMVP 117
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 172
E+ASIDE ++D+TD A+ +A+T +
Sbjct: 118 IIEKASIDEAFMDVTDMAKERIAQTV---------------------------------Y 144
Query: 173 LCRCDADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 231
C+ A+H K L C G +I E+R + + +TCS GIA NK+LAKLAS +NKP Q
Sbjct: 145 FCQDPANHDTKRLLCIGAVISREIRQAIYNKLGYTCSTGIAGNKLLAKLASPLNKPNGQV 204
Query: 232 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 291
V V L+ SLP++K++ LGGKLG L+ T G+ K KL ++ F
Sbjct: 205 VVASRFVIDLMKSLPMRKIRGLGGKLGKQLE------TAGESFK----KL-SAHTFLQRC 253
Query: 292 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 351
L +A+ + G+E A + GS + P K V + LCEE+ R +
Sbjct: 254 GLIELAKHV-GQETAAYVHSICQGSDDNEPVEE--KKVQVKITGVRLLCEEVVIRCEDER 310
Query: 352 EQNKRIAHTLTLH 364
+NKR L++
Sbjct: 311 IENKRFPSQLSIQ 323
>gi|238505178|ref|XP_002383818.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
gi|220689932|gb|EED46282.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
Length = 673
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 180/420 (42%), Gaps = 85/420 (20%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IAHVDLD FY Q E + R +P AV Q++ LIA+ Y AR +G+ R
Sbjct: 40 ASPLRVIAHVDLDAFYAQCEMVRLQTPREIPLAVRQWD-----SLIAINYPARAFGITRM 94
Query: 68 MRGDEAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSIL 108
+ EA+++CP+I L V R K L YR +++ +
Sbjct: 95 ISAKEARKLCPEIVLQHVATFREGEGGKWAYREDSYRRMNTDKVCLDPYRAESRKILKTM 154
Query: 109 -----------------------ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEV 145
++ E+AS+DEV++DL+ +L PE +
Sbjct: 155 KEELSRWYTDLVDEERGLGPHAQIQQASVEKASVDEVFIDLSPLVYGVLLRRYPELRN-- 212
Query: 146 DEEALKSHILGLESKDGNDSKA-------TVKEWL---CRCDADHR----------DKLL 185
DG+D A T EW C D D D +
Sbjct: 213 -------------GPDGDDRVASLPRPPTTALEWNQGDCLVDLDENETEVDDPDWDDVAM 259
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
G IV +R V +TCSAGIA NKM+AKL S NKP +QT V +++ L
Sbjct: 260 LIGSDIVRAVRTVVWDNLSYTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNRAIQNFLSGF 319
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
K++ LGGKLG + G V DLL+ + ++ + +T WL+ I RG EV
Sbjct: 320 KFTKIRMLGGKLGDQVTALFGTEQVSDLLQVTLEQFRAKLDDDTANWLYGIIRGEDKSEV 379
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
R KS S KSF ++ +V + WL ++ RL D + +++R TL LH
Sbjct: 380 NPRTQIKSMLSAKSFRP--SINSVEQAERWLRIFAADIYGRLVEDGVLEHRRRPKTLALH 437
>gi|440471150|gb|ELQ40183.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae Y34]
Length = 679
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 201/436 (46%), Gaps = 50/436 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYN------EWKGGGLIAVGYEARNYGVK 65
R+I+H+DLD FY Q E + P AV Q+ + GLIAV Y AR +G+
Sbjct: 48 RVISHIDLDAFYAQCEMVRLGVDEDRPLAVQQWYVLALTFDATRQGLIAVNYPARKFGIS 107
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILAR 110
R D+A ++CP++++ V R + +YR N ++ VS ILA
Sbjct: 108 RHCAIDDALKLCPELQVQHVATWREGDNTWAYRGDAAANIATDKVSLDPYRLQSRTILAL 167
Query: 111 KGRC--------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG 162
C E+ASIDEV++DL+ + L E PE L A L L
Sbjct: 168 IKECLPPHQCKVEKASIDEVFIDLSANVHSKLIERFPE-LASPPPGADAQARLPLPPVSA 226
Query: 163 NDSKATVKEWLCRC-----DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
D +A L D D D L I ++R + ++TCSAG+A NK+L
Sbjct: 227 LDWQADALIELDETETETDDPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAGNKLL 286
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
+KL S KP QQT + +V+ L K++ LGGKLG + G +V DLL+
Sbjct: 287 SKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDLLEVP 346
Query: 278 EDKLQESYG-FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 336
D+L+ G +T W++N RGI EV +R KS S KSF ++ +V WL
Sbjct: 347 LDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSAKSFRP--SIHSVDQANKWL 404
Query: 337 NQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQE 395
++ RL + + +NKR T+ LH S ++SCP+ G ++ +
Sbjct: 405 RIFSADIFSRLVEEGVLENKRRPKTMNLHHRHNGQSK--------ARSCPIPQGV-RVLD 455
Query: 396 DT--FNLFQAGLREFL 409
D+ + L Q LR+ +
Sbjct: 456 DSVLYELAQNLLRQIV 471
>gi|425773935|gb|EKV12260.1| hypothetical protein PDIG_45850 [Penicillium digitatum PHI26]
gi|425782385|gb|EKV20297.1| hypothetical protein PDIP_17780 [Penicillium digitatum Pd1]
Length = 575
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 141/484 (29%), Positives = 210/484 (43%), Gaps = 64/484 (13%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S R+I +D DCFY Q E + +P V Q+ +IA+ Y AR G+ R +
Sbjct: 25 SALRVITLIDYDCFYAQCESVRLGISSDVPLGVQQWE-----AIIALNYPARANGLARGI 79
Query: 69 RGDEAKEVCPQIELVQVPVAR------------------GKADLSSYR---NAGSEVV-S 106
+EA+ CP + L VP R KA L YR G E++ S
Sbjct: 80 SVEEARVKCPNLILQHVPTWREGCASWAYRPVSTIMPGTDKAALGPYRLESRKGLELIKS 139
Query: 107 ILARK--GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND 164
L + E+AS+DE+YLDL+ ++L + P LD E + K +L L
Sbjct: 140 TLPHSPPQKIEKASVDEMYLDLSAQVHSILLQRYPALLDV--ESSSKDEMLPL------- 190
Query: 165 SKATVKEW----LCRCDA-----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 215
+ +V W + DA D D L G IV +R ++ K +TCSAGIA NK
Sbjct: 191 PRTSVLNWHADAVFGADAEDDHFDWDDIALNIGSEIVDNIRREIFKHMRYTCSAGIARNK 250
Query: 216 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
MLAKLASG NKP QT + + L + K++ LGG LGT + + V +LL
Sbjct: 251 MLAKLASGYNKPNHQTVILRRGTREFLSTHKFTKIRGLGGLLGTQISEKFNTKMVSELLA 310
Query: 276 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 335
+++E G G W++N+ RG EV R+ +S S K+F P+ + ++ W
Sbjct: 311 IPLSQMKEEMGLEVGAWVFNVIRGEEQSEVNPRMHVQSMLSAKTFV-PKIV-SIDQAAKW 368
Query: 336 LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQE 395
L +L RL +N RI+ T+ + +R SK + T ++
Sbjct: 369 LRIFVADLLGRLDELGSENHRISPTIITLNHHIEGRFGPTR----SKQTSVPSSTLITEK 424
Query: 396 DTFNLFQAGLREFLGSFGVKTQ-GSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
FNL + G+ TQ + W ++S+ + I YF D
Sbjct: 425 MLFNL----------ALGLLTQIVAEEKSWPCRSISLRIAGFQSAPKSNTLISSYFMTND 474
Query: 455 KFGS 458
+F S
Sbjct: 475 QFTS 478
>gi|452842927|gb|EME44862.1| hypothetical protein DOTSEDRAFT_70800 [Dothistroma septosporum
NZE10]
Length = 628
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 186/398 (46%), Gaps = 47/398 (11%)
Query: 38 PTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP----------- 86
P AV Q+ GLIA+ Y AR YG+ R + EAKE CP I V
Sbjct: 11 PLAVQQWQ-----GLIAINYAARAYGLNRHVTITEAKEKCPDIICQHVATWKEGDTTWSY 65
Query: 87 -------VARGKADLSSYRNAGSEVVSILA-----RKGRCERASIDEVYLDLTDAAEAML 134
+A K L YR ++++++ + E+ASIDEV+LDL+ +L
Sbjct: 66 ADDAFKEIATRKVSLDPYRIESRKILALIKDCLPKEVQKVEKASIDEVFLDLSAQVHGIL 125
Query: 135 AET-----PPESLDEVDEEALKSHILGLESKDGNDSKATVKE-WLCRCDADHRDKLLACG 188
E P D+ E + L+ K D+ + E W D D D ++
Sbjct: 126 LERYHELRGPAPYDDPSEPLPRPPSTVLDWK--ADALVDLDEKWSEEEDPDWDDVVMLIA 183
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
IV ++R ++ KE ++TCSAG++ NKMLAKL SG KP QT + +V+ L
Sbjct: 184 SEIVRDVRARIFKELKYTCSAGLSRNKMLAKLGSGHKKPNAQTVIRNRAVQQFLSGFKFT 243
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K++ LGGKLG + TV +LL S ++L++ G +TG WL+ + RG EV R
Sbjct: 244 KIRNLGGKLGDEVVAAFNTDTVSELLPISIEQLKKQLGDSTGAWLYGVIRGEDDSEVNPR 303
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASA 367
KS S KSF ++ +V WL ++ RL + + +NKR T+ LH
Sbjct: 304 TQIKSMLSAKSFRP--SINSVDVASKWLRIFVADIFSRLVEEGVLENKRRPKTINLH--- 358
Query: 368 FKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 405
+ +R SKS P+ G +E FNL +A L
Sbjct: 359 -HRQGAQTR----SKSAPIPLGKGITEEVLFNLAKALL 391
>gi|169780638|ref|XP_001824783.1| DNA polymerase eta [Aspergillus oryzae RIB40]
gi|83773523|dbj|BAE63650.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867099|gb|EIT76352.1| DNA polymerase iota/DNA damage inducible protein [Aspergillus
oryzae 3.042]
Length = 673
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 180/420 (42%), Gaps = 85/420 (20%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IAHVDLD FY Q E + R +P AV Q++ LIA+ Y AR +G+ R
Sbjct: 40 ASPLRVIAHVDLDAFYAQCEMVRLQTPREIPLAVRQWD-----SLIAINYPARAFGITRM 94
Query: 68 MRGDEAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSIL 108
+ EA+++CP+I L V R K L YR +++ +
Sbjct: 95 ISAKEARKLCPEIVLQHVATFREGEGGKWAYREDSYKRMNTDKVCLDPYRAESRKILKTM 154
Query: 109 -----------------------ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEV 145
++ E+AS+DEV++DL+ +L PE +
Sbjct: 155 KEELSRWYTDLVDEERGLGPHAQIQQASVEKASVDEVFIDLSPLVYGVLLRRYPELRN-- 212
Query: 146 DEEALKSHILGLESKDGNDSKA-------TVKEWL---CRCDADHR----------DKLL 185
DG+D A T EW C D D D +
Sbjct: 213 -------------GPDGDDRVASLPRPPTTALEWNQGDCLVDLDENETEVDDPDWDDVAM 259
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
G IV +R V +TCSAGIA NKM+AKL S NKP +QT V +++ L
Sbjct: 260 LIGSDIVRAVRTVVWDNLSYTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNRAIQTFLGGF 319
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
K++ LGGKLG + G V DLL+ + ++ + +T WL+ I RG EV
Sbjct: 320 KFTKIRMLGGKLGDQVTALFGTEQVSDLLQVTLEQFRAKLDDDTANWLYGIIRGEDKSEV 379
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
R KS S KSF ++ +V + WL ++ RL D + +++R TL LH
Sbjct: 380 NPRTQIKSMLSAKSFRP--SINSVEQAERWLRIFAADIYGRLVEDGVLEHRRRPKTLALH 437
>gi|118763825|gb|AAI28367.1| Polh protein [Mus musculus]
Length = 556
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 150/279 (53%), Gaps = 14/279 (5%)
Query: 177 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 43 DPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 102
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+ +
Sbjct: 103 SVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAM 162
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 163 CRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDR 222
Query: 357 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 415
+A L + D R + C L RY K+ +D F A +R + G++
Sbjct: 223 VATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQ 273
Query: 416 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
T+ S +T L + A+K C+ + F D
Sbjct: 274 TEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 308
>gi|296817667|ref|XP_002849170.1| DNA polymerase eta [Arthroderma otae CBS 113480]
gi|238839623|gb|EEQ29285.1| DNA polymerase eta [Arthroderma otae CBS 113480]
Length = 646
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 180/412 (43%), Gaps = 75/412 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R + +
Sbjct: 37 RVIAHIDLDAFYAQCEMVRLNTPRDQPLAVQQWQ-----SLIAVNYPARPFGVSRMITAE 91
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 108
EAK++CPQ+ V V + K L YR ++++++
Sbjct: 92 EAKKLCPQLLTPHVATFREGEGENWAYREGGYSVQKDKVSLDPYRAESRKILAVMKATLL 151
Query: 109 -----------------ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK 151
+ R ERA IDEV++DL+ L + E L +
Sbjct: 152 SCAEGIYEGCRGQFSEPSDMVRLERAGIDEVFVDLSALVFGTLLQRY-EVLRSAEAVECS 210
Query: 152 SHILG------------------LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
+ LG L D S+ EW D ++ G IV
Sbjct: 211 TDSLGGFLPRPEATALVWGEDDELIDLDTGKSEEEDPEW--------DDIVMLVGSEIVK 262
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ L
Sbjct: 263 SIRAAVWDQLKYTCSGGIARNKMIAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSL 322
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + +E + DLL D+L+ +TGTWL+ I RG EV R KS
Sbjct: 323 GGKLGKRVASEFETEKIRDLLNIPLDRLKNKLDDDTGTWLYQIIRGEDDSEVTPRTEIKS 382
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S KSF P+ L + + W+ E+ RL + + +NKR +T+H
Sbjct: 383 MISAKSF-NPK-LNALDQAERWMRIFVTEIYGRLIDEGVLENKRRPKMITVH 432
>gi|330916199|ref|XP_003297332.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
gi|311330060|gb|EFQ94574.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
Length = 715
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 179/392 (45%), Gaps = 58/392 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPSKPLAVQQWQ-----GLIAINYPARAFGLSRHVTST 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVS----ILA 109
EA + CP++ L V +A K L YR +++ IL
Sbjct: 99 EALKQCPELILQHVATWKEGDETWAYHENSFKEMATHKVSLDPYRTESRKILKCIKEILP 158
Query: 110 RKG-RCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLE----- 158
K R E+ASIDEV++DL+ +L E PE D+ E K L+
Sbjct: 159 EKDQRVEKASIDEVFMDLSAQVHTILLERYPELRGPAPYDDPTERLPKVPTTVLDWAADA 218
Query: 159 -----SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+DG D D D D + IV ++R + +TCS GIA
Sbjct: 219 LVETGEEDGEDR-----------DPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGGIAR 267
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NKML+K+ SG KP QQT + +VK L + K++ LGGKLG + G V DL
Sbjct: 268 NKMLSKIGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVAMFGTDKVKDL 327
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
++ D+L++ G +TGTW+++I RG EV R KS S KSF ++ +
Sbjct: 328 VEQPLDQLKK-LGDDTGTWIYSIIRGEDNSEVNPRTQIKSMLSAKSFRP--SIHSFEQGV 384
Query: 334 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ R + + +NKR ++ LH
Sbjct: 385 RWLRIFVADIFSRCIEEGVLENKRRPKSINLH 416
>gi|302668344|ref|XP_003025744.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
gi|291189871|gb|EFE45133.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
Length = 645
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 183/411 (44%), Gaps = 73/411 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R +
Sbjct: 38 RVIAHIDLDAFYAQCEMIRLNTPRDQPLAVQQWQ-----SLIAVNYAARPFGVSRMITAA 92
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 110
EA+++CPQ+ V V + K L YR ++++++
Sbjct: 93 EARKLCPQLLTPHVATFREGEGENWAYREGDYSVQKDKVSLDPYRAESRKILAVMKTTLL 152
Query: 111 ----------KG---------RCERASIDEVYLDLTDAAEAML---------AETPPESL 142
+G R E+A IDEV++DL+ L A TP S
Sbjct: 153 TWAEGIYEGCRGQFSDPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATPDGSK 212
Query: 143 DE----VDEEALKSHILG----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTE 194
D + + I G L D +S+ EW D ++ G IV
Sbjct: 213 DGPNTFLPRPETTALIWGEDDELIDLDTGESEEDDPEW--------DDIVIQVGAEIVKF 264
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
+R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LG
Sbjct: 265 VRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLG 324
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
GKLG + +E + DLL D+L+ +TG WL+ I RG EV R KS
Sbjct: 325 GKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSM 384
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S KSF P+ L ++ + W+ EL RL + + +NKR +T+H
Sbjct: 385 ISAKSF-NPK-LASLDQAEKWMRIFVAELYGRLVDEGVLENKRRPKMITVH 433
>gi|119479517|ref|XP_001259787.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
gi|119407941|gb|EAW17890.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 198/461 (42%), Gaps = 91/461 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + + +P AV Q++ LIA+ Y AR++G+ R M
Sbjct: 44 RVIAHIDLDAFYAQCEMVRLGTPKEMPLAVRQWD-----SLIAINYPARSFGISRMMSAS 98
Query: 72 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSIL---- 108
EA++ CP+I L V R K L YR +++ ++
Sbjct: 99 EAQKHCPEIVLQHVATFREGEGGKWAYREDAFKNISTDKVCLDPYRTESRKILKVMKEEL 158
Query: 109 -------------------ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEA 149
+ E+ASIDEV++DL+ A+L + PE
Sbjct: 159 SRWHADLMDCEHEPCSHYQVQPASLEKASIDEVFIDLSPLVYALLLQRYPE--------- 209
Query: 150 LKSHILGLESKDGNDSK-----ATVKEWL---CRCDADHR----------DKLLACGVLI 191
L++ G DG + T EW C D D D + G I
Sbjct: 210 LRNGPQG----DGRSTPLPRPPTTALEWSTEDCLIDLDENETEVDDPDWDDIAMLIGSEI 265
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
V +R V + +TCS G+A NKM++KL S NKP +QT V +++ L S K++
Sbjct: 266 VRSVRTAVWNKLSYTCSGGVARNKMMSKLGSACNKPNKQTIVRNRAIQNFLGSYKFTKIR 325
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
LGGKLG + G V DLL ++ + +T +WL+ I RG EV R
Sbjct: 326 MLGGKLGDQVATLFGTEQVSDLLPVPLEQFRAKLDDDTASWLYGIIRGEDKSEVNPRTQI 385
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKS 370
KS S KSF ++ + + WL ++ RL D + +N+R T+ LH
Sbjct: 386 KSMLSAKSFRP--SINSADQAEKWLRIFAADIYGRLVEDGVLENRRRPKTVALHHR---- 439
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQED-TFNLFQAGLREFLG 410
+ S+ P+ G+A I E F L + LR+ +G
Sbjct: 440 ----QGGQVRSRQLPIP-GSATIDESLLFELGRTLLRQVIG 475
>gi|295666590|ref|XP_002793845.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277498|gb|EEH33064.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 664
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 209/501 (41%), Gaps = 90/501 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + P AV Q+ LIAV Y AR + + R +
Sbjct: 29 RVVAHIDLDAFYAQCEMVRLNTPLTQPLAVQQWE-----SLIAVNYPARAFNITRMLTAA 83
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSIL---- 108
EA++ CPQ+ V +A K L YR +++ ++
Sbjct: 84 EARKRCPQLITQHVATFREGEGEQWKYRDDAAECIATDKVSLEPYRMESRKILEVIKAVL 143
Query: 109 --------------ARKG-------RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDE 147
KG R E+A IDEV++DL+ L E P + E
Sbjct: 144 TEWAERVMRDVGVEGAKGPGTEQLVRVEKAGIDEVFVDLSALVYETLLEWYPMLREGEVE 203
Query: 148 EALKSHILGLESKDGNDSKATVKEW-----LCRCDA--------DHRDKLLACGVLIVTE 194
+ + G TV EW L D D D + G IV
Sbjct: 204 LDVNERLPG--------PPTTVLEWGKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRS 255
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
+R + + ++TCSAGIA NKM+AKL S NKP +QT V +++ L +++ LG
Sbjct: 256 VRAAIWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLG 315
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
GKLG + G VGDLL+ ++L+ G +TGTWL+ I RG EV R KS
Sbjct: 316 GKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSTRTKIKSM 375
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDS 373
S KSF ++K+ + WL ++ RL + + +NKR +T+H
Sbjct: 376 LSTKSFRP--SIKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIHHR------- 426
Query: 374 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSA 433
++ + S+ P+ G F+L + L + + + W LS++
Sbjct: 427 -TKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI---------WPCANLSLNV 476
Query: 434 SKIVPVLSGTCSIMKYFNGPD 454
S L+G S+ +F D
Sbjct: 477 SGFEDGLTGNRSLDSFFGRGD 497
>gi|70998010|ref|XP_753737.1| sister chromatid cohesion protein (Eso1) [Aspergillus fumigatus
Af293]
gi|66851373|gb|EAL91699.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus Af293]
gi|159126527|gb|EDP51643.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus A1163]
Length = 672
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 179/415 (43%), Gaps = 83/415 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + + P AV Q++ LIA+ Y AR++G+ R M
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLGTPKEAPLAVRQWD-----SLIAINYPARSFGISRMMSAS 97
Query: 72 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSIL---- 108
EA++ CP+I L V R K L YR +++ ++
Sbjct: 98 EAQKHCPEIVLQHVATFREGEGGKWAYRKDAFKNISTDKVCLDPYRAESRKILKVMKEEL 157
Query: 109 -------------------ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEA 149
+ E+ASIDEV++DL+ A+L + PE
Sbjct: 158 SRWHAGLVDSEHEPYSHYQVQPSSLEKASIDEVFIDLSSLVYALLLQRYPE--------- 208
Query: 150 LKSHILGLESK-DGNDS-----KATVKEWL---CRCDADHR----------DKLLACGVL 190
L +E + DG + T EW C D D D + G
Sbjct: 209 -----LRIEPQGDGRSTPLPRPPTTALEWNTEDCLIDLDENETEVDDPDWDDIAMLIGSE 263
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
IV +R V + +TCS G+A NKM+AKL S NKP +QT V +++ L S K+
Sbjct: 264 IVRSVRTAVWNKLSYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAIQNFLGSFKFTKI 323
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ LGGKLG + G V DLL ++ + + T +WL+ I RG EV R
Sbjct: 324 RMLGGKLGDQVATLFGTEQVSDLLLVPLEQFRAKFDDATASWLYGIIRGEDKSEVNPRTQ 383
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
KS S KSF ++ + + WL ++ RL D + +N+R T+ LH
Sbjct: 384 IKSMLSAKSFRP--SINSADQAEKWLRIFAADIYGRLVEDGVLENRRRPKTIALH 436
>gi|425772364|gb|EKV10771.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum PHI26]
gi|425774774|gb|EKV13074.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum Pd1]
Length = 646
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/540 (27%), Positives = 229/540 (42%), Gaps = 99/540 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R +P AV Q++ LIA+ Y AR +GV R +
Sbjct: 34 RVIAHIDLDAFYAQCEMVRLGTSREIPLAVRQWD-----SLIAINYAARAFGVSRLINVA 88
Query: 72 EAKEVCPQIELVQVPVAR----GKADL--SSYRNAGSEVVSILARKGR------------ 113
EA+++CP + L V R G+ S+RN ++ VS+ + +
Sbjct: 89 EARKLCPDLVLQHVATFREGEGGRWAYRDDSFRNISTDKVSLDPYRAQSRRILQTMKEAL 148
Query: 114 ----------------------CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK 151
E+ASIDEV++DL+ L + PE L+
Sbjct: 149 ATWNADGVGVETQNPKQELSAVVEKASIDEVFIDLSPLIYRALLQRYPE---------LR 199
Query: 152 SHILGLESKDGN--DSKATVKEWLCRC------------DADHRDKLLACGVLIVTELRM 197
I E++D T +W C D D D ++ G IV +R
Sbjct: 200 MGIPN-ENRDAELPVPPTTALQWNTDCLVDLDKHETEEDDPDWDDVVMLIGSEIVRSVRS 258
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
V ++ +TCSAG+ NKM+AKL S NKP QT V +V+ L +++ LGGKL
Sbjct: 259 AVWEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKL 318
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
G + G V +LL ++L+ T TWL+ I RG EV R KS S
Sbjct: 319 GDQITAAFGTEKVSELLNAPLEQLRTKLADQTATWLYGIIRGEDRSEVNPRTQIKSMLSA 378
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 376
KSF ++ ++ + WL ++ RL D + +N+R +T+H +S
Sbjct: 379 KSFRP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMHHRTAQSR----- 431
Query: 377 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 436
S+ P+ +A + ++L + LR+ + + W + LS+S S
Sbjct: 432 ----SRQIPIASSSAIDENLLYDLANSLLRQVV---------ADGQAWPCSNLSLSVSSF 478
Query: 437 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGE 496
+S +I + D+ + S ID +P S L STE + +L G+
Sbjct: 479 EDGVSNNKAIEGFLIRGDQAKALSHSSRPRDIDNSP---------SELPSTEKRRKLDGD 529
>gi|449297801|gb|EMC93818.1| hypothetical protein BAUCODRAFT_36277 [Baudoinia compniacensis UAMH
10762]
Length = 723
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 183/388 (47%), Gaps = 46/388 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R IA +DLD FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 41 RCIALIDLDAFYAQCETVRLGIDPSKPLAVQQWQ-----GLIAINYPARAFGLSRHVTIS 95
Query: 72 EAKEVCPQIELVQVP---------------------VARGKADLSSYRNAGSEVVSIL-- 108
EAKE CP+I V ++ K L YR ++++++
Sbjct: 96 EAKEKCPEIICQHVATWKAGDTKWSYELNGADAGREISSRKVSLDPYRIQSRKILALIKE 155
Query: 109 ---ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK 160
A + + E+ASIDEV+LDL+ ++L E PE D+ E + L+
Sbjct: 156 FLPADRQKVEKASIDEVFLDLSAHVHSLLLERYPELRGPPPYDDPSEPLPRPPTTALDW- 214
Query: 161 DGNDSKATVKEWLCRCDADHRDKLLACGVL---IVTELRMQVLKETEFTCSAGIAHNKML 217
DS + + + D D C ++ IV ++R V + +TCSAGI+ NKML
Sbjct: 215 -AADSLVDLDS--SQTEEDEPDWDDVCALIASEIVRDVRKAVFDQLHYTCSAGISKNKML 271
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKL +G +KP QT + +V+ L K++ LGGKLG L V ++LK
Sbjct: 272 AKLGAGHHKPNGQTVIRNRAVQQFLSGFKFTKIRNLGGKLGDELVAAFNTDLVSEMLKVP 331
Query: 278 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 337
++L++ +G +TG+WL++ RG EV R KS S KSF ++ + WL
Sbjct: 332 LEQLKKQFGDDTGSWLYSTFRGEDTSEVNPRTQIKSMLSAKSFRP--SINSFEVACKWLR 389
Query: 338 QLCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 390 IFVADIFSRLVEEGVLENKRRPKTINLH 417
>gi|189192050|ref|XP_001932364.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973970|gb|EDU41469.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 714
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 176/392 (44%), Gaps = 58/392 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + P AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPSKPLAVQQWQ-----GLIAINYPARAFGLSRHVTST 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 109
EA + CP++ L V +A K L YR +++ +
Sbjct: 99 EALKQCPELILQHVATWKEGDETWAYHENSFKDMATHKVSLDPYRQESRKILKCIKEILP 158
Query: 110 -RKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLE----- 158
+ R E+ASIDEV++DL+ +L E PE D+ E K L+
Sbjct: 159 DKDQRVEKASIDEVFMDLSAQVHTILLERYPELRGPAPYDDPTERLPKVPTTVLDWAADA 218
Query: 159 -----SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+DG D D D D + IV ++R + +TCS GIA
Sbjct: 219 LVETGEEDGEDR-----------DPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGGIAR 267
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NKML+KL SG KP QQT + +VK L + K++ LGGKLG + G V DL
Sbjct: 268 NKMLSKLGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVAMFGTDKVRDL 327
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
++ D+L+ G +TGTW+ +I RG EV R KS S KSF A+ +
Sbjct: 328 VEQPLDQLKR-LGDDTGTWIHSIIRGEDNSEVNPRTQIKSMLSAKSFRP--AIHSFEQGV 384
Query: 334 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ R + + +NKR ++ LH
Sbjct: 385 RWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|331234078|ref|XP_003329699.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308689|gb|EFP85280.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 673
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 140/478 (29%), Positives = 215/478 (44%), Gaps = 59/478 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH D+D Y Q EQ + L+ P + +W+G LIAV Y AR +G+ R + D
Sbjct: 19 RVIAHCDVDAAYAQFEQVR---LKIPPEKPLAVQQWRG--LIAVNYPARKFGITRHLPFD 73
Query: 72 EAKEVCPQIELVQVPV-ARG-----------------KADLSSYRNAGSEVVSILARK-G 112
+A+++CP++ V V A G K L YR +++ I +
Sbjct: 74 QARKLCPELICVHVATYAHGDSETEAKYHENPRAETHKVSLDPYRRESVKILKIFSESCP 133
Query: 113 RCERASIDEVYLDLTDAAEAMLA--------ETPPESLDEVDEEALKSHILGLESKDGND 164
E+ASIDE +LD + +L E +S E+ + + L+ +D
Sbjct: 134 TIEKASIDEAFLDFSIPVREILCTRYAFPSLEALQDSSSEISLDDPLPNPPPLDLEDLLR 193
Query: 165 SKATVKEWLCRCDADH-----RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
S + L D+DH D L G ++ R QV +TCSAGIA NKMLAK
Sbjct: 194 SSQSNLVPL-DVDSDHPTNTWTDIALLIGAELMARCRQQVFDRLGYTCSAGIATNKMLAK 252
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE- 278
L S KP QT + +V+ L + K++ LGGKLG S+ +EL +T + SE
Sbjct: 253 LCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKLGQSV-SELVASTCDKSCQLSEV 311
Query: 279 -----DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+LQ S G TG W+W RG+ EV+ + L KS S K+F ++ T +
Sbjct: 312 WKIPLSQLQASLGEQTGMWVWETVRGVDRSEVETKTLVKSMMSSKNFRP--SITTWSQAL 369
Query: 334 HWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAK 392
HWL L +L RL E I + +H + + FP TA+
Sbjct: 370 HWLRILARDLCARLNEAREATPGIWPKLIVMHKRDGLQNSLTKQIAFPF--------TAQ 421
Query: 393 IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
+ +D +F G ++ L F V Y +T+L+++ + + +G +I +F
Sbjct: 422 LTDDY--IFSLG-KKLLQEFAVIQTDQTYRLDTVTSLALAFHNLERIEAGQRAIQGFF 476
>gi|326481425|gb|EGE05435.1| sister chromatid cohesion protein [Trichophyton equinum CBS 127.97]
Length = 642
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 185/412 (44%), Gaps = 75/412 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLNTPRDQPLAVQQWQ-----SLIAVNYAARPFGVSRMITAA 91
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 110
EA+++CPQ+ V V + K L YR ++++++
Sbjct: 92 EARKLCPQLLTPHVATFREGEGENWAYREGDYSVQKDKVSLDPYRAESRKILAVMKTTLL 151
Query: 111 ----------KG---------RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK 151
+G R E+A IDEV++DL+ L E+ ++A
Sbjct: 152 TWAEGVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRY-----EILQQAAT 206
Query: 152 SHILGLESKDGNDS-----KATVKEW-----LCRCDA--------DHRDKLLACGVLIVT 193
+ SKDG+ + + T W L D + D ++ G IV
Sbjct: 207 LEV----SKDGHSAFLPRPETTALIWGEDDELIDLDTGESEEDDPEWDDIVIQVGAEIVK 262
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ L
Sbjct: 263 FVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSL 322
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + +E + DLL D+L+ +TG WL+ I RG EV R KS
Sbjct: 323 GGKLGKKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKS 382
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S KSF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 383 MISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|326468815|gb|EGD92824.1| sister chromatid cohesion protein [Trichophyton tonsurans CBS
112818]
Length = 642
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 185/412 (44%), Gaps = 75/412 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLNTPRDQPLAVQQWQ-----SLIAVNYAARPFGVSRMITAA 91
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 110
EA+++CPQ+ V V + K L YR ++++++
Sbjct: 92 EARKLCPQLLTPHVATFREGEGENWAYREGDYSVQKDKVSLDPYRAESRKILAVMKTTLL 151
Query: 111 ----------KG---------RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK 151
+G R E+A IDEV++DL+ L E+ ++A
Sbjct: 152 TWAEGVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRY-----EILQQAAT 206
Query: 152 SHILGLESKDGNDS-----KATVKEW-----LCRCDA--------DHRDKLLACGVLIVT 193
+ SKDG+ + + T W L D + D ++ G IV
Sbjct: 207 LEV----SKDGHSAFLPRPETTALIWGEDDELIDLDTGESEEDDPEWDDIVIQVGAEIVK 262
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ L
Sbjct: 263 FVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSL 322
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + +E + DLL D+L+ +TG WL+ I RG EV R KS
Sbjct: 323 GGKLGKKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKS 382
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S KSF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 383 MISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|302501757|ref|XP_003012870.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
gi|291176431|gb|EFE32230.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
Length = 644
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 182/414 (43%), Gaps = 79/414 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLNTPRDQPLAVQQWQ-----SLIAVNYAARPFGVSRMITAA 91
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 110
EA+++CPQ+ V V + K L YR ++++++
Sbjct: 92 EARKLCPQLLTPHVATFREGEGEHWAYREGDYSVQKDKVSLDPYRAESRKILAVMKNTLL 151
Query: 111 ----------KG---------RCERASIDEVYLDLTDAAEAML----------------A 135
+G R E+A IDEV++DL+ L
Sbjct: 152 TWAEEVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATLDGSK 211
Query: 136 ETPPESLDEVDEEALKSHILG----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
+ P L + AL + G L D +S+ EW D ++ G I
Sbjct: 212 DDPNTFLPRPETTAL---VWGEDDELIDLDTGESEEDDPEW--------DDIVIQVGAEI 260
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
V +R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++
Sbjct: 261 VKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIR 320
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
LGGKLG + +E + DLL D+L+ +TG WL+ I RG EV R
Sbjct: 321 SLGGKLGKRISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEI 380
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
KS S KSF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 381 KSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|303319933|ref|XP_003069966.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109652|gb|EER27821.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 665
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 141/505 (27%), Positives = 213/505 (42%), Gaps = 95/505 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + R P AV Q+ LIAV Y AR++ + R +
Sbjct: 54 RVVAHIDLDAFYAQCEMVRLNTPRTQPLAVQQWE-----SLIAVNYAARSFNISRMITAK 108
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSIL---- 108
EAK CPQ+ V V VA K L YR +++ +
Sbjct: 109 EAKARCPQLMTVHVATFREGEGGKWAYREDGDHNVATDKVSLDPYRAESRKILGTIKDGL 168
Query: 109 ------------------------------ARKGRCERASIDEVYLDLTDAAEAMLAETP 138
R E+A IDEV++DL+ A L E
Sbjct: 169 VAWAEKIDPCGLGERRTESGGSVKEKEKDWTNMVRIEKAGIDEVFIDLSALVWATLLERY 228
Query: 139 PESLDEVDEEALKSHIL----------GLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P L E++ + S L G E + + + +E D D D ++ G
Sbjct: 229 P-MLQEMEVKRQMSERLPRPPTTALDWGKEDELVDLDEGETEE----DDPDWDDMVMLVG 283
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
IV +R+ + + +TCSAGIA NKM+AKL S NKP +QT V +++ L
Sbjct: 284 ADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQQFLGGFKFT 343
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K++ LGGKLG + + V +LL+ ++ + +TG WL+ + RG EV R
Sbjct: 344 KIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRGNDWSEVNPR 403
Query: 309 LLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHAS 366
KS S KSF PG + ++ + WL E+ RL + + ++KR LT+H
Sbjct: 404 TQIKSMISTKSFRPG---INSLEQAEKWLRIFAAEIYGRLVEEGVLEHKRRPKVLTIHHR 460
Query: 367 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 426
S + SR+ P+ G A +E F L + L++ T H W
Sbjct: 461 --HSGHTKSRQ------VPIPTGMAIDEEPLFALAKDLLKQV-------TNEGHM--WPC 503
Query: 427 TALSVSASKIVPVLSGTCSIMKYFN 451
L+++ S +SG S+ +F
Sbjct: 504 MNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|320034290|gb|EFW16235.1| sister chromatid cohesion protein [Coccidioides posadasii str.
Silveira]
Length = 665
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 141/505 (27%), Positives = 213/505 (42%), Gaps = 95/505 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + R P AV Q+ LIAV Y AR++ + R +
Sbjct: 54 RVVAHIDLDAFYAQCEMVRLNTPRTQPLAVQQWE-----SLIAVNYAARSFNISRMITAK 108
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSIL---- 108
EAK CPQ+ V V VA K L YR +++ +
Sbjct: 109 EAKARCPQLMTVHVATFREGEGGKWAYREDGDHNVATDKVSLDPYRAESRKILGTIKDGL 168
Query: 109 ------------------------------ARKGRCERASIDEVYLDLTDAAEAMLAETP 138
R E+A IDEV++DL+ A L E
Sbjct: 169 VAWAEKVDPCGLGERRTESGGSVKEKEKDWTNMVRIEKAGIDEVFIDLSALVWATLLERY 228
Query: 139 PESLDEVDEEALKSHIL----------GLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P L E++ + S L G E + + + +E D D D ++ G
Sbjct: 229 P-MLQEMEVKRQMSERLPRPPTTALDWGKEDELVDLDEGETEE----DDPDWDDMVMLVG 283
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
IV +R+ + + +TCSAGIA NKM+AKL S NKP +QT V +++ L
Sbjct: 284 ADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQQFLGGFKFT 343
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K++ LGGKLG + + V +LL+ ++ + +TG WL+ + RG EV R
Sbjct: 344 KIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRGNDWSEVNPR 403
Query: 309 LLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHAS 366
KS S KSF PG + ++ + WL E+ RL + + ++KR LT+H
Sbjct: 404 TQIKSMISTKSFRPG---INSLEQAEKWLRIFAAEIYGRLVEEGVLEHKRRPKVLTIHHR 460
Query: 367 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 426
S + SR+ P+ G A +E F L + L++ T H W
Sbjct: 461 --HSGHTKSRQ------VPIPTGMAIDEEPLFALAKDLLKQV-------TNEGHM--WPC 503
Query: 427 TALSVSASKIVPVLSGTCSIMKYFN 451
L+++ S +SG S+ +F
Sbjct: 504 MNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|67537016|ref|XP_662282.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|40741530|gb|EAA60720.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|259482486|tpe|CBF77016.1| TPA: DNA polymerase eta (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 674
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 136/467 (29%), Positives = 196/467 (41%), Gaps = 97/467 (20%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R+IAH+DLD FY Q E + R P AV Q++ LIA+ Y AR +G+ R
Sbjct: 39 ASPLRVIAHIDLDAFYAQCEMVRLGTPRERPLAVQQWD-----SLIAINYPARKFGITRM 93
Query: 68 MRGDEAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSIL 108
+ EAK C I L V R K L YR +++ +
Sbjct: 94 ISAKEAKAKCADIVLQHVATFREGEGGKWAYREDAWKNIGTDKVCLDPYRAESRKILGTI 153
Query: 109 ARK-GRC------------------------ERASIDEVYLDLTDAAEAMLAETPPESLD 143
R+ +C E+AS+DEV++DL+ +L + PE +
Sbjct: 154 KRELSKCYSELNGDLSGLGLSSQIKLQEALVEKASVDEVFIDLSPLVFGVLLQRYPEMRE 213
Query: 144 EVDEEALKSHILGLESKDGNDSKA-------TVKEW---LCRCDADHR----------DK 183
K H G+D A T EW C D D D
Sbjct: 214 -------KPH--------GDDRVALLPCPPTTALEWDTEDCLVDLDENETEVDDPDWDDV 258
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
+ G IV +R V +TCSAGIA NKM+AKL S NKP +QT V +++ L
Sbjct: 259 AMLIGAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRNRAIQNFLS 318
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
K++ LGGKLG + G + +LLK S ++ + +T WL+ I RG
Sbjct: 319 GFKFTKIRMLGGKLGDQVTAMFGTEQISELLKVSLEQFRAKLNDDTAVWLYGIIRGEDKS 378
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLT 362
EV R KS S KSF ++ T+ WL+ ++ RL + + ++KR T+
Sbjct: 379 EVNPRTQIKSMLSAKSFRP--SINTLDQADKWLHIFAADIYGRLVEEGVLEHKRRPKTIA 436
Query: 363 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQED-TFNLFQAGLREF 408
LH + S+ P+ G+A I ED F L + LR+
Sbjct: 437 LHHR--------QGAQVKSRQLPIP-GSATIDEDLLFELGKTLLRQI 474
>gi|327301129|ref|XP_003235257.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
gi|326462609|gb|EGD88062.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
Length = 645
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 181/414 (43%), Gaps = 79/414 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLNTPRDQPLAVQQWQ-----SLIAVNYAARPFGVSRMITAA 91
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 110
EA+++CPQ+ V V + K L YR +++++L
Sbjct: 92 EARKLCPQLLTPHVATFREGEGEHWAYREGDYSVQKDKVSLDPYRAESRKILAVLKTTLL 151
Query: 111 ----------KG---------RCERASIDEVYLDLTDAAEAML----------------A 135
+G R E+A IDEV++DL+ L
Sbjct: 152 TWAEGVYDGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATLDGSK 211
Query: 136 ETPPESLDEVDEEALKSHILG----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
+ P L + AL I G L D +S+ EW D + G I
Sbjct: 212 DGPNTFLPRPETTAL---IWGEDDELIDLDTGESEEDDPEW--------DDIAIQVGAEI 260
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
V +R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++
Sbjct: 261 VKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIR 320
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
LGGKLG + +E + DLL D+L+ +TG WL+ I RG EV R
Sbjct: 321 SLGGKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEI 380
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
KS S KSF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 381 KSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|400595519|gb|EJP63314.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 190/401 (47%), Gaps = 43/401 (10%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK-R 66
+S R++AHVDLD FY Q E + P AV Q+ LIAV Y AR G+ R
Sbjct: 160 TSPLRVVAHVDLDAFYAQCEMVRLGLPDDQPLAVQQWQ-----SLIAVNYPARKAGIGGR 214
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI------------LA 109
+AK+ CP + V R D +YR N ++ VS+ L
Sbjct: 215 FGSVSDAKKACPDLIAQHVATWREGDDKWAYRDDAAANMATDKVSLDPYRLESRRILALV 274
Query: 110 RKG------RCERASIDEVYLDLTDAAEAMLA------ETPPESLDEVDEEALKSHILGL 157
R+ R E+AS+DEV+LDL+ ++L + PP D + L S + L
Sbjct: 275 REHLPQNLQRVEKASVDEVFLDLSAQVHSILLDRFPELQQPPPYNDPTERLPLPS-VSAL 333
Query: 158 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
+ + D+ + E D D D + G IV LR ++ + +TCSAG+A NK+L
Sbjct: 334 DWQ--ADALVDLDEEREGQDPDWDDVAILVGSEIVRGLRSEIRERMRYTCSAGVACNKLL 391
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
+KL SG KP +QT V +V L + K++ LGGKLG + + G V DLL S
Sbjct: 392 SKLGSGFKKPNRQTVVRNRAVGIFLHEFKLTKIRNLGGKLGEQVVSIFGTEKVEDLLPVS 451
Query: 278 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 337
++L+ G TG WL+N RG+ EV R +S S KSF P + T WL
Sbjct: 452 VEQLKAKLGEETGVWLYNTIRGVDTSEVNPRTQLRSMLSAKSF-RPH-INTQEQADRWLR 509
Query: 338 QLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 377
++ RL + + +NKR T+H SA ++ + SR+
Sbjct: 510 IFVGDIFNRLVEEGVLENKR--RPKTIHLSARHATQTRSRQ 548
>gi|409048993|gb|EKM58471.1| hypothetical protein PHACADRAFT_140428 [Phanerochaete carnosa
HHB-10118-sp]
Length = 629
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 142/497 (28%), Positives = 212/497 (42%), Gaps = 78/497 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA D D FY EQ + L P + +W+ LIAV Y AR YG+ R
Sbjct: 47 RVIALCDSDAFYAACEQLR---LTIDPEKPLVVQQWQA--LIAVNYPARKYGISRMDNIK 101
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARK---G 112
+AK+ CP +E+V V + K L YR ++ + G
Sbjct: 102 DAKKRCPHLEVVHVATYKEGEAEPGYWENPDTRTHKVSLDYYRKESWKIYHMFKEGLPIG 161
Query: 113 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHIL---GL----- 157
E+ASIDE ++D T LAE PP++ D + GL
Sbjct: 162 EVEKASIDEAFIDFTRPVREEILSRYPYLAEVPPDAPFGKDTPLPPPPPISWDGLGTVIP 221
Query: 158 ------ESKDGNDSKATVKEWLCRCDADH------------RDKLLACGVLIVTELRMQV 199
E KD ND + E DAD D L+ ++ ++R V
Sbjct: 222 VNPPREEKKDTNDEEGN--EDAIHEDADEEGVHEDDASATWHDVALSIAAELMGKIRHDV 279
Query: 200 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 259
+ ++ SAGI+ NK LAKL + KP Q+ + +++ L +P +K++ LGGKLG
Sbjct: 280 YTKLGYSTSAGISRNKFLAKLTASYKKPNNQSILRNAAIPNYLRPMPFQKIRFLGGKLGK 339
Query: 260 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGK 318
+L E V+TV DLL + D++Q +G W+W I RG+ EV+ + + KS + K
Sbjct: 340 ALAEEYDVSTVSDLLTVNLDEIQRKFG-EESIWVWEILRGVDRTEVKEKPPITKSMLASK 398
Query: 319 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRK 377
+ P P + T + HW+ L EL+ RL E + +L LH +
Sbjct: 399 NLPQP--IVTASQGHHWIRVLAAELALRLREARESIPALWPKSLVLHV-------QQGHE 449
Query: 378 KFPSKSCPLRYGTAKIQEDTFNLFQAGL-REFLGSFGVKTQGSHYSGWRITALSVSASKI 436
F SK P + T +I D L +E +G T S + +IT + +S S I
Sbjct: 450 AFRSKQAPFSF-TREITVDVIATAGDKLWKELVG-----TDTSRKAPMKITHIQLSFSGI 503
Query: 437 VPVLSGTCSIMKYFNGP 453
V +G I +F P
Sbjct: 504 VSTETGQRRIEGFFQKP 520
>gi|325190748|emb|CCA25240.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 619
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 195/422 (46%), Gaps = 71/422 (16%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H+DLDCFY QVE + P A Q+ G ++AV Y AR YGVKR + D
Sbjct: 11 RVIVHLDLDCFYAQVEGLRLNIPESEPIAAHQW-----GFVLAVNYVARQYGVKRGDQID 65
Query: 72 EAKEVCPQIELVQVPV--------------ARGKADLSSYRNAGSEVVSILARKGR-CER 116
EA + CP+I + V V A KA L YR+A + + +L R CER
Sbjct: 66 EALKKCPKIHIPHVEVLGENRLRNGEPYDRAHQKATLRRYRDASNAIFKVLRRHAVICER 125
Query: 117 ASIDEVYLDLTDAAEAMLAETPPE----SLDEVDEEAL--------KSHILGLESK-DGN 163
A IDE YLD+T+ A +LA + ++ ++ + L +S I+ + K D +
Sbjct: 126 AGIDEAYLDVTERATELLANMEVQMHDFCMNALNRDTLVYGVCERKRSGIIERKCKTDTS 185
Query: 164 DSKATVKEWLCRCDA---DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 220
+ + E + ++ ++LL G LI E+R V E + CS GI+ NK++AKL
Sbjct: 186 EDECDENETIVTSESFPLTEEEQLLCVGALISREIREAVYTELGYRCSTGISTNKLIAKL 245
Query: 221 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL------------------- 261
AS +NKP QT V V L+ PI+K++ LGGKLG +
Sbjct: 246 ASPLNKPNGQTIVSPRFVPLLMRHHPIQKVRGLGGKLGHRMMEYYDQFVCSKEKQENKEP 305
Query: 262 ---QNEL----------GVTTVGDLLK-FSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
QN + T GD ++ S L +G T +++ + G G E
Sbjct: 306 QKYQNTMESGGKRDEIKSKITAGDFIQACSLSSLSAYFGNETAAFVYRLCLGDDGNEPVD 365
Query: 308 --RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
++ K S K F ++ +++WL + EE+ +R+ + ++R +TLH
Sbjct: 366 GDKVDLKGFSSTKQFTPNSHIQNEPQLRYWLRIISEEMMDRINEEKHDHRRFPVHVTLHI 425
Query: 366 SA 367
++
Sbjct: 426 TS 427
>gi|255955947|ref|XP_002568726.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590437|emb|CAP96625.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 646
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 175/412 (42%), Gaps = 80/412 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q++ LIA+ Y AR +G+ R +
Sbjct: 34 RVIAHIDLDAFYAQCEMVRLGIPRETPLAVRQWD-----SLIAINYAARPFGISRLINVA 88
Query: 72 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSILAR-- 110
EA+++CP + L V R K L YR +++ +
Sbjct: 89 EARKLCPDLVLQHVATFREGEGGRWAYRDDSFKNISTDKVSLDPYRAQSRKILQTMKEAL 148
Query: 111 -------------------KGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALK 151
E+ASIDEV++DL+ L + PE
Sbjct: 149 ATWSADNTEVENHNSKQELSAVLEKASIDEVFIDLSPLIYRALLQRYPE----------- 197
Query: 152 SHILGLESKDGNDSK------ATVKEWLCRC------------DADHRDKLLACGVLIVT 193
L + ++D N T +W C D D D ++ G IV
Sbjct: 198 ---LRMGTQDENRDAELPTPPTTALQWDTDCLVDLDKHETEEDDPDWDDIVMLIGSEIVR 254
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R V ++ +TCSAG+ NKM+AKL S NKP QT V +V+ L +++ L
Sbjct: 255 SVRNTVWEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRML 314
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + G V DLL ++L+ +T +WL+ I RG EV R KS
Sbjct: 315 GGKLGEQITAAFGTEKVSDLLNVPLEQLRSKLADHTASWLYGIIRGDDRSEVNPRTQIKS 374
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
S KSF ++ ++ + WL ++ RL D + +N+R +T+H
Sbjct: 375 MLSAKSFRP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMH 424
>gi|392865724|gb|EAS31537.2| sister chromatid cohesion protein [Coccidioides immitis RS]
Length = 665
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 138/500 (27%), Positives = 207/500 (41%), Gaps = 85/500 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD FY Q E + R P AV Q+ LIAV Y AR + + R +
Sbjct: 54 RVVAHIDLDAFYAQCEMVRLNTPRTQPLAVQQWE-----SLIAVNYAARPFNISRMITAK 108
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSIL---- 108
EAK CPQ+ V V VA K L YR +++ +
Sbjct: 109 EAKARCPQLMTVHVATFREGEGGKWAYREDGDHNVATDKVSLDPYRAESRKILGTIKDGL 168
Query: 109 ------------------------------ARKGRCERASIDEVYLDLTDAAEAMLAETP 138
R E+A IDEV++DL+ A L E
Sbjct: 169 VAWAEKVDPCGLGERRTESGGSVKEKEKDWTNMVRIEKAGIDEVFIDLSALVWATLLERY 228
Query: 139 P-----ESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P E E+ E + L+ ++ + D D D ++ G IV
Sbjct: 229 PMLQEMEVKREMSERLPRPPTTALDWGKEDELVDLDEGETEEDDPDWDDVVMLVGADIVR 288
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
+R + + +TCSAGIA NKM+AKL S NKP +QT V +++ L K++ L
Sbjct: 289 SVRFMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQQFLGGFKFTKIRML 348
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GGKLG + + V +LL+ ++ + +TG WL+ + RG EV R KS
Sbjct: 349 GGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRGNDWSEVNPRTQIKS 408
Query: 314 HGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSS 371
S KSF PG + ++ + WL E+ RL + + ++KR LT+H S
Sbjct: 409 MISTKSFRPG---INSLEQAEKWLRIFAAEIYGRLVEEGVLEHKRRPKVLTIHHR--HSG 463
Query: 372 DSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV 431
+ SR+ P+ G A +E F L + L++ T H W L++
Sbjct: 464 HTKSRQ------VPIPTGMAIDEEPLFALAKDLLKQV-------TNEGHM--WPCMNLAL 508
Query: 432 SASKIVPVLSGTCSIMKYFN 451
+ S +SG S+ +F
Sbjct: 509 TVSGFEDGVSGNQSLDSFFT 528
>gi|336370736|gb|EGN99076.1| hypothetical protein SERLA73DRAFT_168617 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 184/407 (45%), Gaps = 46/407 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY EQ + +P V Q+ LIAV Y AR +G+ R R
Sbjct: 48 RVVALCDSDAFYAACEQVRLGLDPNVPMVVQQWE-----ALIAVNYPARKFGISRMDRVK 102
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARK---G 112
+AK+ CP++ V V + K L YR +++++ G
Sbjct: 103 DAKKRCPELIAVHVATYKEGQKEPGYWDDVDSHTHKVSLDYYRRESMKIINMFKENLPGG 162
Query: 113 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHILG------LES 159
E+ASIDE ++D T LAE P ++ + +D + L
Sbjct: 163 EIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGIDSPLPPPPPISWNAIGFLVP 222
Query: 160 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETE----FTCSAGIAHNK 215
++S E L R + D + I EL Q+ KE +T SAGI+ NK
Sbjct: 223 VTPSESAGNEGEELLRGEDDDSTTWHDVALSIAAELMDQIRKEVHTKLGYTTSAGISRNK 282
Query: 216 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
LAKL + KP Q+ + +++ L LP +K++ LGGKLG +L E V+TVGDLL
Sbjct: 283 FLAKLCASYKKPNSQSILRNTAIPNYLRPLPFQKIRFLGGKLGDALAKEYDVSTVGDLLT 342
Query: 276 FSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQH 334
S +++Q +G N+ W++ + RGI EV+ + + KS + K+ P P + + H
Sbjct: 343 ISLEEMQRKFGENS-IWVYELLRGIDRSEVKEKSAMFKSMLASKNLPKP--ITNPSEGHH 399
Query: 335 WLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 380
WL L EL+ RL E + + T+ LHA + + FP
Sbjct: 400 WLRVLAAELALRLKDSREASPNLWPKTIVLHARKGYETARSKQASFP 446
>gi|328852695|gb|EGG01839.1| hypothetical protein MELLADRAFT_117712 [Melampsora larici-populina
98AG31]
Length = 672
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 201/493 (40%), Gaps = 84/493 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH D+D Y Q EQ +L+ P + +WKG LIAV Y AR +G+ R + D
Sbjct: 24 RVIAHCDIDAAYAQFEQ---VRLKIAPEKPLAVQQWKG--LIAVNYPAREFGITRHLPFD 78
Query: 72 EAKEVCPQIELVQVPV-ARG-----------------KADLSSYRNAGSEVVSILARK-G 112
EA + CP + V V A+G K L YR +++ I +
Sbjct: 79 EALKKCPNLICVHVATYAQGDSETEAKYHENPKPETHKVSLDPYRRESVKILKIFSESCD 138
Query: 113 RCERASIDEVYLDLTDAAEAMLAET------------------PPESLDEVDEEALKSHI 154
E+ASIDE +LD + +L PP LD E H
Sbjct: 139 LIEKASIDEAFLDFSIPVRDILINRYSDLLSTSKTNNLDDFLPPPPQLDWKSTE----HN 194
Query: 155 LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 214
L L + D + W D L G ++ + R V + +TCSAG+ N
Sbjct: 195 LILNTSDSEVDEMMTTTWT--------DVALMIGAELMAQCRKAVFDQLGYTCSAGVTSN 246
Query: 215 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-------- 266
KMLAKL S KP QT + S +K L L + K++ LGGKLG SL +
Sbjct: 247 KMLAKLCSSYKKPNAQTVLRPSCIKSFLRDLEVSKIRFLGGKLGKSLIELIHHPSQATAA 306
Query: 267 --------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 318
TTVG++ LQ G TG W+W I RGI EV+ + KS S K
Sbjct: 307 EEEAEESIRTTVGEVWNLDLSLLQNKLGDETGMWVWEIVRGIDKTEVEPKTQVKSMMSSK 366
Query: 319 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRK 377
+F ++ + HWL L +L RL I T+ +H + + +
Sbjct: 367 NFRP--SISSWEEGIHWLRILSTDLLARLNEARTLTPGIWPKTIVMHKRDGNYNSTAKQI 424
Query: 378 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 437
FP T K+ D +F G R L F +K +IT+L ++ +
Sbjct: 425 GFPF--------TQKL--DRLYIFNLGQR-LLQEFVIKENSKKKELGKITSLCLAFQTLE 473
Query: 438 PVLSGTCSIMKYF 450
+ SG I +F
Sbjct: 474 RLESGQQGIEGFF 486
>gi|315048855|ref|XP_003173802.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
gi|311341769|gb|EFR00972.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
Length = 646
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 182/414 (43%), Gaps = 79/414 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + R P AV Q+ LIAV Y AR +GV R + +
Sbjct: 39 RVIAHIDLDAFYAQCEMIRLGTPRDQPLAVQQWQ-----SLIAVNYAARPFGVSRMITAE 93
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 108
EA+++CPQ+ V V + K L YR ++++ +
Sbjct: 94 EARKLCPQLLTPHVATFREGEGENWAYRDGDYSVQKDKVSLDPYRAESRKILATMKATLL 153
Query: 109 -----------------ARKGRCERASIDEVYLDLTDAAEAML----------------A 135
+ R E+A IDEV++DL+ L
Sbjct: 154 TWAEGVYEGCRDQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLQRYEVLRLAGTFEGSK 213
Query: 136 ETPPESLDEVDEEAL----KSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
++P L + AL ++ L D +S+ EW D ++ G I
Sbjct: 214 DSPNRLLPRPETTALLWGEDDELIDL---DTGESEEDDPEW--------DDVVIQVGAEI 262
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
V +R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++
Sbjct: 263 VKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIR 322
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
LGGKLG + +E + DLL D+L+ +TG WL+ I RG EV R
Sbjct: 323 SLGGKLGKKIASEFETDKISDLLNIPLDRLKNKLDDDTGVWLYQIIRGEDDCEVTPRTEI 382
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
KS S KSF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 383 KSMISAKSF-NPK-LVSLDQGEKWMRIFVAEIYGRLIDEGVLENKRRPKMITVH 434
>gi|171676163|ref|XP_001903035.1| hypothetical protein [Podospora anserina S mat+]
gi|170936147|emb|CAP60807.1| unnamed protein product [Podospora anserina S mat+]
Length = 696
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 175/392 (44%), Gaps = 50/392 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLDCFY QVE + P AV Q W+ GLIAV Y AR + + R
Sbjct: 44 RVVAHLDLDCFYAQVEMVRLGIPEDKPLAVQQ---WERQGLIAVNYPARAFKIGRHCTVT 100
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILARK-- 111
EA+ +CP++ V +A K L YR ++ ++
Sbjct: 101 EARRLCPELIAQHVATWREGDDKWAYREDAAEHIATDKVSLDPYRLESRRIMRVIKEHLP 160
Query: 112 ----GRCERASIDEVYLDLTDAAEAMLAETPPESLD------EVDEEALKSHILGLESK- 160
+ E+ASIDEV+LDLT ++ E E L +V EE + L+ K
Sbjct: 161 GGGLQKVEKASIDEVFLDLTAHVHQVMLERYGEELGGPPPYGDVSEELPMPVVTALDWKA 220
Query: 161 -------DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+G+ + D D D L IV +R + ++ ++CSAG++
Sbjct: 221 DALVDLGEGDRQEGEFD------DPDWDDVALLVASEIVRNVRGVIREKLGYSCSAGVSR 274
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NK+L+KL S KP QQT + +V L K++ LGGKLG + + V DL
Sbjct: 275 NKLLSKLGSAHKKPDQQTVIRNRAVGHFLSGFKFTKIRNLGGKLGEQVADAFKTEAVSDL 334
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
L ++L++ G G W++ RGI EV + KS S KSF + TV
Sbjct: 335 LTVPIEQLKQKLGDENGVWIYETLRGIDTSEVNSGTQIKSMLSAKSFRPD--ITTVEQAT 392
Query: 334 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
WL ++ RL + + ++KR T+ LH
Sbjct: 393 KWLRIFAADIFARLVEEGVLEHKRRPKTINLH 424
>gi|239612109|gb|EEQ89096.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ER-3]
Length = 756
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 182/432 (42%), Gaps = 102/432 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RIIAH+DLD FY Q E + R P AV Q+ LIAV Y AR + + R +
Sbjct: 84 RIIAHIDLDAFYAQCEMVRLNTPRTQPLAVQQWE-----SLIAVNYAARAFNITRMLTAA 138
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYR-------------- 98
EA++ CPQ+ V VA K L YR
Sbjct: 139 EARKRCPQLVTQHVATFREGEGAQWKYRDDAAECVATDKVSLEPYRVESRRILEGIRAAL 198
Query: 99 ------------------------NAGSEVVSILARKGRCERASIDEVYLDLTDAAEAML 134
+E+ L + R E+A IDEV++DL+ A++
Sbjct: 199 AAWAEGVMRDVGGGGGGGEGRGGGGTKNELQLQLQQLVRVEKAGIDEVFVDLS----ALV 254
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGNDSK-------ATVKEW-----LCRCDA---- 178
ET L H + E + G D TV EW L DA
Sbjct: 255 YET-----------LLDRHPMLREGEVGRDMSERLPRPPTTVLEWGKEDMLVDLDAGQAE 303
Query: 179 ----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 304 EDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVR 363
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+V+ L +++ LGGKLG + G VG LL ++L+ G +TGTWL+
Sbjct: 364 NRAVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLY 423
Query: 295 NIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LE 352
+ RG EV R KS S KSF PG +++ + WL ++ RL + +
Sbjct: 424 ELLRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVL 480
Query: 353 QNKRIAHTLTLH 364
+NKR +T+H
Sbjct: 481 ENKRRPKVITIH 492
>gi|297678217|ref|XP_002816976.1| PREDICTED: DNA polymerase eta-like isoform 2 [Pongo abelii]
Length = 191
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 91/123 (73%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AML 134
L
Sbjct: 127 ERL 129
>gi|261202176|ref|XP_002628302.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
gi|239590399|gb|EEQ72980.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 182/433 (42%), Gaps = 103/433 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RIIAH+DLD FY Q E + R P AV Q+ LIAV Y AR + + R +
Sbjct: 84 RIIAHIDLDAFYAQCEMVRLNTPRTQPLAVQQWE-----SLIAVNYAARAFNITRMLTAA 138
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYR-------------- 98
EA++ CPQ+ V VA K L YR
Sbjct: 139 EARKRCPQLVTQHVATFREGEGAQWKYRDDAAECVATDKVSLEPYRVESRRILEGIRAAL 198
Query: 99 -------------------------NAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+E+ L + R E+A IDEV++DL+ A+
Sbjct: 199 AAWAEGVMRDVGGGGGGGGEGRGGGGTKNELQLQLQQLVRVEKAGIDEVFVDLS----AL 254
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSK-------ATVKEW-----LCRCDA--- 178
+ ET L H + E + G D TV EW L DA
Sbjct: 255 VYET-----------LLDRHPMLREGEVGRDMSERLPRPPTTVLEWGKEDMLVDLDAGQA 303
Query: 179 -----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 304 EEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIV 363
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
+V+ L +++ LGGKLG + G VG LL ++L+ G +TGTWL
Sbjct: 364 RNRAVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWL 423
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-L 351
+ + RG EV R KS S KSF PG +++ + WL ++ RL + +
Sbjct: 424 YELLRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGV 480
Query: 352 EQNKRIAHTLTLH 364
+NKR +T+H
Sbjct: 481 LENKRRPKVITIH 493
>gi|255085274|ref|XP_002505068.1| predicted protein [Micromonas sp. RCC299]
gi|226520337|gb|ACO66326.1| predicted protein [Micromonas sp. RCC299]
Length = 236
Score = 154 bits (390), Expect = 1e-34, Method: Composition-based stats.
Identities = 108/249 (43%), Positives = 142/249 (57%), Gaps = 26/249 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ H+DLDCFY QVE ++ +P AV Q++ GLIAV Y AR+ GVKR +
Sbjct: 9 RVVIHLDLDCFYAQVEAKRLGIDPSVPLAVQQWS-----GLIAVNYPARHRGVKRHLNVT 63
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAA 130
EAK++ P ELV V +R K L YR A V+S LA R ERASIDE Y+D+T
Sbjct: 64 EAKKLVP--ELVCVHQSR-KVSLRRYRRASWRVMSALADRCEHVERASIDEAYVDVTREV 120
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDG-NDSKATVKEWLCRCDADHRDKLLACGV 189
+A + +DE+ +DG N S A V L ++H D LA G
Sbjct: 121 DAAIDGRTNAEIDEM-------------VRDGVNASGAVVP--LTPSTSEH-DMRLAIGA 164
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +R VL +T FT S G+AHNKMLAKLAS NKP +QT V +V +++SLP++
Sbjct: 165 HICAGIRAAVLHQTGFTMSGGVAHNKMLAKLASARNKPNKQTAVSARAVTEMMESLPMRS 224
Query: 250 MKQLGGKLG 258
+K LGGKLG
Sbjct: 225 IKGLGGKLG 233
>gi|308809351|ref|XP_003081985.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
gi|116060452|emb|CAL55788.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
Length = 595
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 137/258 (53%), Gaps = 15/258 (5%)
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
+KLLA G I LR + E +T SAGIA NKMLAKL SGMNKPA QT + + L
Sbjct: 257 EKLLAAGAYICHNLRKACVDELGYTLSAGIATNKMLAKLTSGMNKPASQTVLCPDHTEAL 316
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L LPI +++ LG K G L L V T+G+L + KL+E G W+ ++ G
Sbjct: 317 LAELPIDRIRGLGAKFGRELVEGLDVKTIGELARTPIRKLEEICGEERAQWVRKVSLGQD 376
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R +PKS G+GK+F G A++++ S + WL +L EL++R D ++ R L
Sbjct: 377 DDPVKEREMPKSIGTGKTFRGALAIRSLESAKKWLAELAAELNDRCEDDRDEWNREPKLL 436
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 421
TL S+ +++S S+ CP+R G +I +D L + S
Sbjct: 437 TLGLSSPDELNTNS--GHCSRRCPMRLGADEITQDALAL-------------ISKWSSGR 481
Query: 422 SGWRITALSVSASKIVPV 439
S W IT +SVSAS V +
Sbjct: 482 SDWSITGMSVSASNFVTL 499
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 93/166 (56%), Gaps = 24/166 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-------------------- 51
R++AH+DLD FY QVE+ +P V QY+ ++ GG
Sbjct: 6 RVVAHLDLDAFYCQVERAAHGIDVNVPLVVAQYDPFERGGVRTRDQGARRILRDGLERHS 65
Query: 52 LIAVGYEARNYGVKRSMRGDEAKEVCPQ-IELVQVPVARGKADLSSYRNAGSEVVSILAR 110
LIAV YEAR GVKR+MR +A+ +C +VQVP R KADL++YR AG+ V IL+R
Sbjct: 66 LIAVSYEARARGVKRNMRAIDARRLCGDGAVVVQVPTRRSKADLTAYRRAGAAVARILSR 125
Query: 111 KGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILG 156
G ERASIDE YLDLT A LAET EV A K+H+ G
Sbjct: 126 GGVMERASIDEAYLDLTANARRTLAET---EWREVLATARKAHVAG 168
>gi|169623303|ref|XP_001805059.1| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
gi|160704960|gb|EAT77740.2| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
Length = 652
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 160/347 (46%), Gaps = 55/347 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAHVDLD FY Q E + LP AV Q+ GLIA+ Y AR +G+ R +
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGLDPSLPLAVQQWQ-----GLIAINYPARAFGLSRHVTSS 98
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVV-----SIL 108
EA + CP + L V +A K L YR ++ S+
Sbjct: 99 EALKQCPDLILQHVATWKEGDEKWAYHEDSFKNMATHKVSLDPYRLECRRILKCIKESLP 158
Query: 109 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLE----- 158
++ R E+ASIDEV++DL+ +L E PE D+ E K L+
Sbjct: 159 DKEQRVEKASIDEVFMDLSGQIHTILLERYPELRGPAPYDDPTERLPKVPTTVLDWAADA 218
Query: 159 -----SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
+DG D D D D IV ++R + ++ +TCS G+A
Sbjct: 219 LVETGEEDGEDQ-----------DPDWDDVCTVIASEIVRDVRKNIKEKLGYTCSGGVAK 267
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
NKMLAKL SG KP QQT + ++K L + K++ LGGKLG G V L
Sbjct: 268 NKMLAKLGSGYKKPNQQTVIRNRAIKHFLSDMKFTKIRMLGGKLGDEAVAMFGTDLVKSL 327
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
++ ++L++ G +TG+WL+NI RG EV R KS S KSF
Sbjct: 328 MEQPLEQLKK-LGDDTGSWLYNIIRGEDHSEVNPRTQIKSMLSAKSF 373
>gi|327352728|gb|EGE81585.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ATCC
18188]
Length = 549
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 182/432 (42%), Gaps = 102/432 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RIIAH+DLD FY Q E + R P AV Q+ LIAV Y AR + + R +
Sbjct: 29 RIIAHIDLDAFYAQCEMVRLNTPRTQPLAVQQWE-----SLIAVNYAARAFNITRMLTAA 83
Query: 72 EAKEVCPQIELVQVP-------------------VARGKADLSSYR-------------- 98
EA++ CPQ+ V VA K L YR
Sbjct: 84 EARKRCPQLVTQHVATFREGEGAQWKYRDDAAECVATDKVSLEPYRVESRRILEGIRAAL 143
Query: 99 ------------------------NAGSEVVSILARKGRCERASIDEVYLDLTDAAEAML 134
+E+ L + R E+A IDEV++DL+ A++
Sbjct: 144 AAWAEGVMRDVGGGGGGGEGRGGGGTKNELQLQLQQLVRVEKAGIDEVFVDLS----ALV 199
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGNDSK-------ATVKEW-----LCRCDA---- 178
ET L H + E + G D TV EW L DA
Sbjct: 200 YET-----------LLDRHPMLREGEVGRDMSERLPRPPTTVLEWGKEDMLVDLDAGQAE 248
Query: 179 ----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 234
D D + G IV +R + + ++TCSAGIA NKM+AKL S NKP +QT V
Sbjct: 249 EDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVR 308
Query: 235 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
+V+ L +++ LGGKLG + G VG LL ++L+ G +TGTWL+
Sbjct: 309 NRAVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLY 368
Query: 295 NIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LE 352
+ RG EV R KS S KSF PG +++ + WL ++ RL + +
Sbjct: 369 ELLRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVL 425
Query: 353 QNKRIAHTLTLH 364
+NKR +T+H
Sbjct: 426 ENKRRPKVITIH 437
>gi|405952422|gb|EKC20236.1| DNA polymerase iota [Crassostrea gigas]
Length = 734
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 165/354 (46%), Gaps = 40/354 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY QVE + P LR P + Q N ++ Y AR YGV + M
Sbjct: 41 RTIVHIDVDCFYAQVEMIRNPTLRDKPLGIQQKN-----IVVTCNYVARKYGVTKLMYIK 95
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
+AKE CPQ+ LV DL++YRN ++ L + + ER +DE YLD+++
Sbjct: 96 DAKEKCPQLVLV------SGEDLTNYRNMSYKISEFLLKYTQYVERLGMDENYLDVSELV 149
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E M +TP + H+ G DS E +C C R + G
Sbjct: 150 ECMKDKTPL---------TVAGHVFG-------DSNQDSPEDICTCGCYER---ILIGSH 190
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKK 249
I E+R + KE TC AGIAHNK+L+KL +KP QQTT+ + LP +
Sbjct: 191 IAEEIRAALYKEMGITCCAGIAHNKLLSKLVGEQHKPNQQTTLFSHHASTFMSKLPKARS 250
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G L E GV T+ DL + + L+ G +T + ++ GI V
Sbjct: 251 IPGVGSATARRLA-EFGVVTMTDLQQCPLEDLKRELGGSTAVTIKELSEGIDENPVIPYS 309
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
P++ SF K+ SV+ NQ +EL + L L ++ R+A T+ L
Sbjct: 310 KPQTLSDEDSF------KSCCSVKEA-NQKIKELVKSLMIRLVEDGRVAGTVRL 356
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 164/362 (45%), Gaps = 66/362 (18%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+S R I H+D+D F+ VEQR QP+LRG P AV K G + A YEAR +GV+
Sbjct: 3 ESRELRKIIHIDMDAFFASVEQRDQPELRGRPIAV--GGGAKRGVVAAASYEARTFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G +A+ +CP++ V K YR ++ I +L+
Sbjct: 61 AMSGVQARRLCPELVFV-------KPRFDRYREVSRQIRGI---------------FLEY 98
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE D K +
Sbjct: 99 TDLVE-------PLSLDE-----------------------------AYLDVTANRKGMP 122
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++L+ET T SAGI+ NK +AK+AS NKP Q TVP V+ L+SL
Sbjct: 123 SATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLESLE 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ N LG+ T DL + SE L +G +G + + RG+ VQ
Sbjct: 183 IRKFHGV-GKVTAEKMNALGIFTGADLRRQSEHFLTGHFG-KSGHHYYRVVRGVHDSPVQ 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+PKS G+ ++F L + + L ++ EELS RL + K I TL + S
Sbjct: 241 PSRVPKSLGAERTF--SENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTI--TLKIRYS 296
Query: 367 AF 368
F
Sbjct: 297 DF 298
>gi|346320479|gb|EGX90079.1| sister chromatid cohesion protein Eso1 [Cordyceps militaris CM01]
Length = 670
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 180/387 (46%), Gaps = 37/387 (9%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+IAHVDLD FY Q E + P AV Q+ LIA+ Y AR G+
Sbjct: 39 SSPLRVIAHVDLDAFYAQCEMVRLGLPDDQPLAVQQWQ-----SLIAINYPARRSGMGGR 93
Query: 68 MRGD-EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILA-- 109
+ +AK+ CP + V R D +YR N ++ VS ILA
Sbjct: 94 LGSVLDAKKACPNLIAQHVATWREGDDKWAYRDDAAANMATDKVSLDPYRLESRRILALV 153
Query: 110 ------RKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 163
R E+ASIDEV+LDL+ ++L + PE L + S L + S
Sbjct: 154 HDHLPQNLQRVEKASIDEVFLDLSAQVHSILLDRFPE-LQQPPPYNDPSERLPMPSVSAL 212
Query: 164 DSKAT----VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 219
D KA + E D D D + G IV +LR ++ ++ +TCSAG+A NK+L+K
Sbjct: 213 DWKADALVDLDEDREGEDPDWDDVAILVGSEIVRDLRSEIREKLRYTCSAGVACNKLLSK 272
Query: 220 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 279
L SG KP +QT V +V L + K++ LGGKLG + + V DLL +
Sbjct: 273 LGSGYKKPNRQTVVRNRAVAVFLQDFKLTKIRNLGGKLGEQVVSIFETEQVKDLLPVPVE 332
Query: 280 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 339
+L+ G TG WL+N RG+ EV R KS S KSF + T WL
Sbjct: 333 QLKAKLGDETGIWLYNTIRGVDTSEVNPRTQIKSMLSAKSFRP--YINTQDQAIKWLRIF 390
Query: 340 CEELSERLCSD-LEQNKRIAHTLTLHA 365
++ RL + + +NKR T+ L A
Sbjct: 391 AGDIFNRLVEEGVLENKRRPKTIHLSA 417
>gi|110665656|gb|ABG81474.1| polymerase (DNA directed), eta [Bos taurus]
Length = 222
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG++AV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE YLDLT A +
Sbjct: 67 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAYLDLTSAVQ 126
Query: 132 AML--AETPPESLDEVDEEALKSHILGLESKDGNDSKAT 168
L + P S D + ++ G + +G K T
Sbjct: 127 ERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKGT 165
>gi|367041902|ref|XP_003651331.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
gi|346998593|gb|AEO64995.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
Length = 642
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 188/430 (43%), Gaps = 51/430 (11%)
Query: 51 GLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP------------------VARGKA 92
GL+AV Y AR YG+ R EAK++CP + V +A K
Sbjct: 52 GLVAVNYPARAYGIGRMCTVTEAKKLCPDLLHPHVATWREGDDKWAYRPDAAENIATDKV 111
Query: 93 DLSSYRNAGSEVVSIL-----ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDE 147
L YR +++I+ + + E+A IDEV+LDL+ A+L E PE L
Sbjct: 112 SLDPYRLESRRILAIIKEHLPSHLQKVEKAGIDEVFLDLSAHVHAVLLERFPE-LSAPPP 170
Query: 148 EALKSHILGLESKDGNDSKATV-----KEWLCRCDADHRDKLLACGVLIVTELRMQVLKE 202
+ S +L + D +A E D D D IV +R + +
Sbjct: 171 DGNPSELLPVPPVSALDWQADALVDLDDESAEFDDPDWDDVAFLVASEIVRNIRAAIRDK 230
Query: 203 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 262
+TC+AGIA NK+L+KL S KP QQT + +V+ L K + LGGKLG +
Sbjct: 231 LRYTCAAGIARNKLLSKLGSAHRKPNQQTVIRNRAVRKFLSGFKFTKFRNLGGKLGEHVS 290
Query: 263 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-P 321
+V +LL S ++L+ G TGTW++N RGI EV +R KS S KSF P
Sbjct: 291 QVFNTESVQELLSVSLEQLKLRLGDETGTWVYNTLRGIDTSEVNSRTQIKSMLSAKSFRP 350
Query: 322 GPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFP 380
G + TV WL ++ RL + + ++KR T+ LH S +R
Sbjct: 351 G---INTVEQATRWLKIFAADIFARLVEEGVLEHKRRPKTINLH----HRHGSQTR---- 399
Query: 381 SKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 440
S+ P+ G + E F L ++ L + + Q H W + LS+S +
Sbjct: 400 SRQSPIPQGRSLDAETLFRLAKSLLHQIV-------QEGHV--WPCSNLSLSVGGFEDGI 450
Query: 441 SGTCSIMKYF 450
SG I +
Sbjct: 451 SGNMGIAGFL 460
>gi|403415591|emb|CCM02291.1| predicted protein [Fibroporia radiculosa]
Length = 1222
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 217/501 (43%), Gaps = 85/501 (16%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA D D FY EQ + +P V Q++ LIAV Y AR YG+ R +
Sbjct: 618 RVIALCDSDAFYAACEQVRLGLDPSVPLVVQQWD-----SLIAVNYPARTYGITRMEKVK 672
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---KG 112
EA+ CP++ +V V + K L YR +++++ G
Sbjct: 673 EARRKCPELTVVHVATFKEGEKEPGYWKNPDTLTHKVSLDYYRRESMKIITMFQEGLPTG 732
Query: 113 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVD------------------- 146
E+ASIDE ++D T LAE PP++ + +D
Sbjct: 733 EIEKASIDEAFIDFTRPVREEILRRYPYLAEVPPDAPNGIDSPVPSPPPIIWSGLGTVVF 792
Query: 147 ---------EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
++A++S S+ ++S VKE C D L+ ++ +R
Sbjct: 793 ADHEPQEIRDDAIRSQ-RSARSRTHDESSEGVKE--CDSSTTWHDVALSIAAELMGRIRR 849
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
+ ++ +T SAG+A NK LAKL + KP Q+ + +++ L + +K++ LGGKL
Sbjct: 850 DIHEKLGYTTSAGLARNKFLAKLTASYKKPNSQSILRNAAIPNYLRPIAFQKIRFLGGKL 909
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGS 316
G ++ E +TVGDLL + +++Q G N+ W++ I RGI EV+ + + KS +
Sbjct: 910 GKAIAEEFDASTVGDLLLINLEEMQRKLGENS-IWVYEILRGIDRSEVKEKSFVNKSMMA 968
Query: 317 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDS 375
K+ P P +T HW+ L EL+ RL +Q + TL LH +
Sbjct: 969 SKNLPQPVTNETQG--YHWIRVLAAELALRLTEARDQTPALWPKTLVLHVRQGYDTARSK 1026
Query: 376 RKKFPSKSCPLRYGTAKIQEDTFNLFQAG---LREFLGSFGVKTQGSHYSGWRITALSVS 432
+ FP D + AG RE +G T S + +IT +++
Sbjct: 1027 QAPFPFSR----------HVDIDIVASAGDKLWRELVG-----TDTSRAAPVKITHIALG 1071
Query: 433 ASKIVPVLSGTCSIMKYFNGP 453
+ + + +G SI +F+ P
Sbjct: 1072 FTGVESMEAGQQSIEGFFHTP 1092
>gi|417396963|gb|JAA45515.1| Putative dna polymerase eta-like isoform 2 [Desmodus rotundus]
Length = 200
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 90/123 (73%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P+LR P AVVQY WKGGG++AV YEAR +GV R+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPQLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV RGKA+L YR A EV+ +++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPGLLLAQVRETRGKANLMKYREASVEVMEVMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AML 134
L
Sbjct: 127 ERL 129
>gi|389748620|gb|EIM89797.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 700
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 187/400 (46%), Gaps = 55/400 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA D D FY E+R+ P V Q++ LIAV Y AR +G+ R +
Sbjct: 54 RVIALCDSDAFYAACERRRLGIDPEKPFVVRQWD-----ALIAVNYPARKFGITRMAKVA 108
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---KG 112
+A + CP++ +V V + K L YR +++++I +G
Sbjct: 109 DALKKCPELVVVHVATYKEGDPEPGYWDKPDTRTHKVSLDHYRRESAKIITIFKEGLPEG 168
Query: 113 RCERASIDEVYLDLTDAAEAMLAE-------TPPESLDEVDEEAL---------KSHILG 156
E+ASIDE ++D + +L E PP++ D +D KS+I+
Sbjct: 169 EIEKASIDEAFIDFSRPVRKILLERYPHLATVPPDAPDGLDTVLPPPPPITWDSKSNIIP 228
Query: 157 LESKDGNDSKATVKEWLCRCDADHRDK-----------LLACGVLIVTELRMQVLKETEF 205
+ +++ E ++ DK L+ ++ ++R V ++ +
Sbjct: 229 IYPSKSSETVVDAPETDREAESHKEDKDVEPAPTWHDVALSIAAELMDKIRGDVREQLGY 288
Query: 206 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 265
T SAGIA NK LAKL + K Q+ + +++ L + +K++ LGGKLG +L +E
Sbjct: 289 TTSAGIARNKFLAKLTASYRKYDSQSVLRNAAIPNYLQPMQFQKIRFLGGKLGKALADEY 348
Query: 266 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL-LPKSHGSGKSFPGPR 324
V+TVGDLL S +++Q +G W++ I RGI EV+ + + KS + K+ P P
Sbjct: 349 DVSTVGDLLTISLEEMQRKFG-EESIWVYEILRGIDRSEVKEKPSMAKSMMASKNLPRP- 406
Query: 325 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
+ TVA HWL L EL+ RL ++ T+ +H
Sbjct: 407 -ITTVAEGPHWLRVLAAELALRLNEARMEHDVWPKTIVVH 445
>gi|159484140|ref|XP_001700118.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
gi|158272614|gb|EDO98412.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
Length = 873
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 158/331 (47%), Gaps = 40/331 (12%)
Query: 18 DLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVC 77
DLDCFY QVEQ++ R P AV Q++ GLIA+ Y AR GV R MR EAK++C
Sbjct: 28 DLDCFYCQVEQKRLGIPREQPVAVQQWD-----GLIAINYAARAAGVTRHMRVREAKKLC 82
Query: 78 PQIELVQV-PVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAE 136
PQ+ LV V ++ G + S A +++++L +ML
Sbjct: 83 PQLRLVHVETISAGDGESGSPVKASGQIMALLG----------------------SMLRP 120
Query: 137 TPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC----GVLIV 192
+ + + + KA+V E L+AC G LI
Sbjct: 121 SAAATAATAAGGGAATATGPVSGGGCLLEKASVDEAFLDVS-----PLVACSPCGGGLIA 175
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
LR V ++ FTCSAG++ NK+LAK+ S NKP +QT V V+ +L LP+ K++
Sbjct: 176 QRLRRAVYEQLGFTCSAGVSVNKLLAKVGSARNKPDKQTLVLPRGVQDMLTDLPLGKLRG 235
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
LGGKLG +L+ +LG T G + LQ G +G W+W + RG E V + PK
Sbjct: 236 LGGKLGAALEGQLGAATAGQAAALPLEALQRVLGERSGLWVWQVVRGQCSEPVTPKDKPK 295
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
S S KSF A +Q WL L EEL
Sbjct: 296 SLLSCKSF---EPTSAPAELQRWLLILAEEL 323
>gi|336383501|gb|EGO24650.1| hypothetical protein SERLADRAFT_449409 [Serpula lacrymans var.
lacrymans S7.9]
Length = 636
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 184/409 (44%), Gaps = 48/409 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY EQ + +P V Q+ LIAV Y AR +G+ R R
Sbjct: 48 RVVALCDSDAFYAACEQVRLGLDPNVPMVVQQWE-----ALIAVNYPARKFGISRMDRVK 102
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARK---G 112
+AK+ CP++ V V + K L YR +++++ G
Sbjct: 103 DAKKRCPELIAVHVATYKEGQKEPGYWDDVDSHTHKVSLDYYRRESMKIINMFKENLPGG 162
Query: 113 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHILG------LES 159
E+ASIDE ++D T LAE P ++ + +D + L
Sbjct: 163 EIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGIDSPLPPPPPISWNAIGFLVP 222
Query: 160 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETE----FTCSAGIAHNK 215
++S E L R + D + I EL Q+ KE +T SAGI+ NK
Sbjct: 223 VTPSESAGNEGEELLRGEDDDSTTWHDVALSIAAELMDQIRKEVHTKLGYTTSAGISRNK 282
Query: 216 MLAKLASGMNKPAQQ--TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
LAKL + KP Q + + +++ L LP +K++ LGGKLG +L E V+TVGDL
Sbjct: 283 FLAKLCASYKKPNSQVCSILRNTAIPNYLRPLPFQKIRFLGGKLGDALAKEYDVSTVGDL 342
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASV 332
L S +++Q +G N+ W++ + RGI EV+ + + KS + K+ P P + +
Sbjct: 343 LTISLEEMQRKFGENS-IWVYELLRGIDRSEVKEKSAMFKSMLASKNLPKP--ITNPSEG 399
Query: 333 QHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 380
HWL L EL+ RL E + + T+ LHA + + FP
Sbjct: 400 HHWLRVLAAELALRLKDSREASPNLWPKTIVLHARKGYETARSKQASFP 448
>gi|350594084|ref|XP_003483838.1| PREDICTED: DNA polymerase eta-like, partial [Sus scrofa]
Length = 163
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A +D+DCF+VQVEQR+ P L+ P AVVQY WKGGG+++V YEAR +GV +SM D
Sbjct: 7 RVVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTKSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE ++DLT+A
Sbjct: 67 DAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAFVDLTNAVR 126
Query: 132 AML--AETPPESLDEVDEEALKSHILGLESKDGNDSK 166
L + P S D + ++ GL + +G K
Sbjct: 127 ERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEK 163
>gi|19113570|ref|NP_596778.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe 972h-]
gi|12230051|sp|O42917.1|ESO1_SCHPO RecName: Full=N-acetyltransferase eso1; AltName: Full=ECO1 homolog;
AltName: Full=Sister chromatid cohesion protein eso1
gi|2842510|emb|CAA16862.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe]
gi|7678718|dbj|BAA95122.1| Eso1 [Schizosaccharomyces pombe]
Length = 872
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 178/373 (47%), Gaps = 34/373 (9%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S R++AH+D D FY QVE + +P AV Q W+G LIAV Y AR + R
Sbjct: 23 NSPLRVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQ---WQG--LIAVNYAARAANISRH 77
Query: 68 MRGDEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK 111
EAK+ CP++ V + K L YR+ ++++I+ +
Sbjct: 78 ETVTEAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKH 137
Query: 112 G-RCERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEEAL--KSHILGLESKDGNDSKA 167
++ASIDE +++LT D +L E P + D ++ +L ++ G
Sbjct: 138 APVVKKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFG---MV 194
Query: 168 TVKEWLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 223
+E + R D+ D L IV E+R + + ++TCSAG++ N ML+KL S
Sbjct: 195 IEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSS 254
Query: 224 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 283
NKP +QT + ++++ L SL I ++ LGGK G + N LG ++ D+ S D L +
Sbjct: 255 RNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLID 314
Query: 284 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
G G +WN+ GI E+ ++ KS S K+F + +K+ +W +L
Sbjct: 315 KLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDL 373
Query: 344 SERLCSDLEQNKR 356
R +LE +R
Sbjct: 374 RSRFL-ELEGMRR 385
>gi|255079098|ref|XP_002503129.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
gi|226518395|gb|ACO64387.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
Length = 652
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 174/374 (46%), Gaps = 42/374 (11%)
Query: 6 PDSSGA--RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
PD + A RI+AH D+D FY QVE+ + P+LRG P AV Q ++ Y AR+ G
Sbjct: 50 PDDANASRRIVAHFDVDAFYSQVEELRDPRLRGRPMAVTQKFL-----IVTANYAARSAG 104
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 123
+K+ M +AK +CP++ LV DL+ YR +V + L R G CE+ +DE +
Sbjct: 105 LKKLMSTTKAKALCPEVALVS------GEDLTPYRACAKKVRAALERFGTCEKLGLDECW 158
Query: 124 LDLTDAAEAMLAETPP-------------ESLDEVDEEALKSHILGLESKDGNDSKATVK 170
+DLT + +A P E + E D I ++ + N S
Sbjct: 159 VDLTAEVDRRIAAGGPASDPPLVGHRHSSEHVVESDNAHRPMDIRAVDPERTNASDGVHH 218
Query: 171 EWLCRCD--AD----------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
RC+ AD R++ L G I E R V T SAGIAHNKMLA
Sbjct: 219 PVPPRCEDGADPDANPDVSDPARERRLRVGAAIAAEARDAVRSATGLRMSAGIAHNKMLA 278
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL SG++KP QTT+P L+ LP++ + +G +L + GV T DL + +
Sbjct: 279 KLVSGLHKPDDQTTLPAGVAAKLVSPLPVRALPGVGHGAERTLVHR-GVRTAADLRRVTR 337
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
++ E G G + + A G+ EEV + P SF R+ T +SV L
Sbjct: 338 SEVCEWLGPRVGRKVHDAAWGVDREEVAPKPAPNFVTCEDSF---RSCTTWSSVDAVLAV 394
Query: 339 LCEELSERLCSDLE 352
+ +L R+ + E
Sbjct: 395 IAPDLLARMDEEYE 408
>gi|359318428|ref|XP_003432548.2| PREDICTED: DNA polymerase iota [Canis lupus familiaris]
Length = 763
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 176/378 (46%), Gaps = 42/378 (11%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
AR+I HVDLDCFY QVE P+L+G P V Q ++ YEAR GVK+ M
Sbjct: 74 ARVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKLMNV 128
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT+
Sbjct: 129 RDAKEKCPQLVLVN------GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEM 182
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E L + DE+ + H+ +++ D H L G
Sbjct: 183 VEKRLQQL---QSDELSALTVSGHVYN-------------NQYINLHDILHIR--LLVGS 224
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK 248
I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL +K
Sbjct: 225 QIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQSLNHVK 284
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
+M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 285 EMPGIGYKTAKRLE-ALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVTPS 343
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
P+S SF + + V++ + +L L R+C Q+ R HT+ L +
Sbjct: 344 GPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVC----QDGRKPHTIRLIIRRY 396
Query: 369 KSSDSDSRKKFPSKSCPL 386
S + SR+ S+ CP+
Sbjct: 397 SSENHCSRE---SRQCPI 411
>gi|291399949|ref|XP_002716300.1| PREDICTED: DNA polymerase iota, partial [Oryctolagus cuniculus]
Length = 709
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 176/381 (46%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S RII HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 46 TSSFRIIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 100
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MTVKDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 154
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + P DE+ + H+ N+ + + L +LL
Sbjct: 155 TEIVEKRLQQLPS---DELSAATVSGHVY-------NNQPVNLHDVL-------HIRLLV 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHSLN 256
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK+M +G K L+ LG+T+V DL FS L++ G + + ++ G V
Sbjct: 257 HIKEMPGVGYKTTKRLE-ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 315
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + V+ + +L L R+C Q+ R HT+ L
Sbjct: 316 IPSGPPQSFSEEDSF---KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRLII 368
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
F S R+ S+ CP+
Sbjct: 369 RRFSSGKLCGRE---SRQCPI 386
>gi|213513962|ref|NP_001133709.1| DNA polymerase iota [Salmo salar]
gi|209155032|gb|ACI33748.1| DNA polymerase iota [Salmo salar]
Length = 757
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 180/383 (46%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P + R+I H DLDCFY QVE + P LR +P + Q ++ Y AR+ GV
Sbjct: 39 PVTPVQRVILHFDLDCFYAQVEMIRNPALRNVPLGIQQKYI-----IVTCNYVARDLGVT 93
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYL 124
+ M +AKE CPQ+ LV +G+ DL+ YR +V +L ER DE ++
Sbjct: 94 KLMLVTDAKEKCPQLVLV-----KGE-DLTHYRETSYKVTELLMSFCPLVERLGFDENFM 147
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T+ E + +TP E + + H+ L D +D+K V L
Sbjct: 148 DITEMVERRMEQTP-----ESAHYSYEGHVYSL---DTSDAKVMVH------------PL 187
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
LA G I ELR ++ + T AGIA +K+LAKL +G KP QQTT+ SVK ++ S
Sbjct: 188 LAVGSHIAAELRAEIHSKLGLTGCAGIATSKLLAKLVAGTFKPNQQTTLLPESVKDIMGS 247
Query: 245 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L ++K+ +G + LQ LG+ V DL F L +G +T L N+A GI
Sbjct: 248 LNGLRKVPGVGHQTAKRLQ-ALGLVGVQDLQLFPLADLVREFGVSTAQRLQNLALGIDDT 306
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + + V + L L +R+ D Q + T+
Sbjct: 307 PVTPTGAPQSLSDEDSF---KKMSSTNEVWQKVKDLLSSLLDRMHKDGRQPFTLRLTIRR 363
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+++ K +SR+ CP+
Sbjct: 364 YSATNKWFSRESRQ------CPI 380
>gi|291394393|ref|XP_002713588.1| PREDICTED: DNA polymerase iota [Oryctolagus cuniculus]
Length = 733
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 176/381 (46%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S RII HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 46 TSSFRIIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 100
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MTVKDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 154
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + P DE+ + H+ N+ + + L +LL
Sbjct: 155 TEIVEKRLQQLPS---DELSAATVSGHVY-------NNQPVNLHDVL-------HIRLLV 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHSLN 256
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK+M +G K L+ LG+T+V DL FS L++ G + + ++ G V
Sbjct: 257 HIKEMPGVGYKTTKRLE-ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 315
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + V+ + +L L R+C Q+ R HT+ L
Sbjct: 316 IPSGPPQSFSEEDSF---KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRLII 368
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
F S R+ S+ CP+
Sbjct: 369 RRFSSGKLCGRE---SRQCPI 386
>gi|322696817|gb|EFY88604.1| sister chromatid cohesion protein Eso1 [Metarhizium acridum CQMa
102]
Length = 585
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 177/389 (45%), Gaps = 41/389 (10%)
Query: 51 GLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP------------------VARGKA 92
GLIAV Y AR +G+ R EA+++CP + V +A K
Sbjct: 11 GLIAVNYPARAWGIGRHCNVTEARKLCPDLIAQHVATWREGDDKWAYRDDAAASIATDKV 70
Query: 93 DLSSYRNAGSEVVSIL-----ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SL 142
L YR ++++++ + E+ASIDEV+LDL+ +L E PE
Sbjct: 71 SLDPYRLESRKILALIRDTLPPNLQKVEKASIDEVFLDLSAHVHTILLERFPELSNPPPY 130
Query: 143 DEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKE 202
D++ E I L+ K D+ + E D D D + G IV +R QV
Sbjct: 131 DDLAERLPLPSIAALDWK--ADALVDLDEDQESQDPDWDDVAILIGSEIVRNVRAQVHGR 188
Query: 203 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 262
+TCSAGIA+NKM++KL SG KP QT V +V L + K++ LGGKLG +
Sbjct: 189 LGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGKLGERVV 248
Query: 263 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 322
+ ++ DLL+ S ++++ G TG+WL + RGI EV +R KS S KSF
Sbjct: 249 SVFNTQSIKDLLEVSLEQMKSKLGDETGSWLHDTLRGIDNSEVNSRTQIKSMLSAKSFRP 308
Query: 323 PRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 381
++ T WL ++ RL + + N+R ++ LH + S
Sbjct: 309 --SISTEEQALKWLRIFVGDIFSRLVEEGVLDNRRRPRSINLHHRHAGQTR--------S 358
Query: 382 KSCPLRYGTAKIQEDTFNLFQAGLREFLG 410
K P+ G +E F+L + L + L
Sbjct: 359 KQSPIPPGQVIDEESLFHLAKDLLTQILA 387
>gi|417412383|gb|JAA52580.1| Putative dna polymerase iota/dna damage inducible protein, partial
[Desmodus rotundus]
Length = 703
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 176/381 (46%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS +R+I HVDLDCFY QVE P+L+G P V Q ++ YEAR GVK+
Sbjct: 12 SSSSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQ-----KFLVVTCNYEARELGVKKL 66
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++D+
Sbjct: 67 MTVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDI 120
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + + L + + H+ +S + N D HR L+
Sbjct: 121 TEMVEKRLQQLQSDDLSAL---PVSGHVYNDQSVNLN-------------DVLHRRLLV- 163
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
G + E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 164 -GSQMAAEMREAMCDRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLK 222
Query: 247 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IKKM +G K L+ LGV++V DL FS L++ G + + ++ G V
Sbjct: 223 HIKKMPGIGYKTARRLE-ALGVSSVQDLQTFSSKVLEKELGISVAQRIQKLSFGEDNSPV 281
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
LP+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 282 TPSGLPQSFSEEDSF---KKCSSEVEAKSKIEELLASLLNRVC----QDGRKPHTVRLTI 334
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
S R+ S+ CP+
Sbjct: 335 RRCSSERHCGRE---SRQCPV 352
>gi|257205730|emb|CAX82516.1| polymerase (DNA directed) [Schistosoma japonicum]
Length = 228
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 119/215 (55%), Gaps = 14/215 (6%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCFYVQVEQR+ P+ +G P V QY+EWKGGG +A+ YEAR G+KR M GD
Sbjct: 5 RIVMLLDMDCFYVQVEQREAPETKGKPCIVSQYSEWKGGGALAISYEARALGIKRGMFGD 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
E + P + + +VP RGKA+L+ YR A SEV+ ++ ERASIDE Y+DLT
Sbjct: 65 EIRAQYPDVIIFKVPEKRGKAELTKYRVASSEVIQCISEFTSDIERASIDEAYVDLTAIV 124
Query: 131 EAM------LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH---- 180
++ L+ P S V + + L LE N +W+ D H
Sbjct: 125 DSTLDRDNNLSSLQPNSESYVLVNSDIAEKLNLELTQTNCVSLNGSDWV---DLLHSHFA 181
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 215
K LA +V +R + ++T F CSAGI NK
Sbjct: 182 EGKRLAIASELVYRIRQAIFRKTGFICSAGIGPNK 216
>gi|323451991|gb|EGB07866.1| hypothetical protein AURANDRAFT_26642 [Aureococcus anophagefferens]
Length = 218
Score = 146 bits (368), Expect = 4e-32, Method: Composition-based stats.
Identities = 99/263 (37%), Positives = 134/263 (50%), Gaps = 55/263 (20%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
+ +D+DCFYV VE+ + P L GLP AV QY W+ YEAR GVKR M+ +A
Sbjct: 8 VGFIDMDCFYVAVERARDPSLDGLPVAVCQYESWQKDTKTLTAYEARAAGVKRQMQAGQA 67
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++ CP++ VQVP GKA++S Y+ AG V ILA R E+ S+DEV +D+T AA
Sbjct: 68 RKACPRLVTVQVPTEHGKANMSIYKEAGQRVCDILATFADRVEKRSVDEVAVDVTGAARR 127
Query: 133 MLAETPPESLDEVDEEALK--SHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+L TP D++ EAL+ SH+ AD
Sbjct: 128 LLETTP---FDDILREALQKGSHL-----------------------AD----------- 150
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ + G+A NK LAKL G++KP QQT V V GLL LP+ ++
Sbjct: 151 ---------------SAAGGVAPNKQLAKLGCGLHKPNQQTVVLRRHVAGLLRDLPLDRL 195
Query: 251 KQLGGKLGTSLQNELGVTTVGDL 273
LGG+ G L++EL V T GDL
Sbjct: 196 AGLGGEFGKRLKDELRVETAGDL 218
>gi|281351226|gb|EFB26810.1| hypothetical protein PANDA_002636 [Ailuropoda melanoleuca]
Length = 701
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 177/381 (46%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS +R+I HVDLDCFY QVE P+L+G P V Q ++ YEAR GVK+
Sbjct: 10 SSSSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQ-----KYLVVTCNYEARKLGVKKL 64
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 65 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 118
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +++ D H L
Sbjct: 119 TEMVEKRLQQL---QSDELSALTVSGHVYN-------------NQYINLHDIVHIR--LL 160
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + + + L+ SL
Sbjct: 161 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVLIQSLS 220
Query: 247 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+++M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 221 HVREMPGIGYKTAKRLE-ALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 279
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 280 TPSGPPQSFSEEDSF---KKCSSEVEAKNKVEELLASLLNRVC----QDGRKPHTIRLVI 332
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S + SR+ S+ CP+
Sbjct: 333 RRYSSENHCSRE---SRQCPI 350
>gi|302755030|ref|XP_002960939.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
gi|300171878|gb|EFJ38478.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
Length = 294
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 149/309 (48%), Gaps = 35/309 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ H+D+DCFY Q E ++P LR P V Q ++ Y AR GV + + D
Sbjct: 8 RVVIHLDVDCFYAQSEILRRPWLRDRPVGVTQKFL-----VVTSNYVARQLGVPKMVPVD 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
EAK C + L+ DL+ YR A ++ ++ R G E+ +DE +D+T+
Sbjct: 63 EAKRCCSDLVLIN------GEDLTPYRYASKLIMEVIKRFGTVEKRGLDECAVDVTEEVL 116
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
+A P S H+LG G+ + A D LL G +
Sbjct: 117 KRVASANPTSF--------VGHVLG-----GDLTT----------QATQGDLLLMVGTQL 153
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R V KET + CS GI+HNKMLAK+A +NKP +QT + S+V + LP+ K+
Sbjct: 154 AAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPNKQTCITQSAVNDFIVPLPVCKIP 213
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + +L+ E+GV T+GD+ + +L +G G L++ RG VQ +
Sbjct: 214 GVGRQTEATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYSRVQDKGFS 272
Query: 312 KSHGSGKSF 320
KS SF
Sbjct: 273 KSLSVEDSF 281
>gi|156058306|ref|XP_001595076.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980]
gi|154700952|gb|EDO00691.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 611
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 165/363 (45%), Gaps = 51/363 (14%)
Query: 38 PTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP----------- 86
P AV Q+ GLIA+ Y AR +G+ R + EAK++CP + V
Sbjct: 11 PLAVQQWQ-----GLIAINYPARAFGLNRHINITEAKKLCPDLICQHVATWREGDEKWAY 65
Query: 87 -------VARGKADLSSYRNAGSEVVSILAR-----KGRCERASIDEVYLDLTDAAEAML 134
+A K L YR +++ + R E+AS+DEV++DL+ A+L
Sbjct: 66 HDDAFKNIAIHKVSLDPYRLESRRILACIKDCVPNDLQRVEKASVDEVFMDLSSQVHAIL 125
Query: 135 AETPPE-----SLDEVDEE-------ALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
E PE D++ E+ L L D ++++ D D D
Sbjct: 126 LERYPELQGPAPYDDLTEQLPLPPTTVLDWKADALVDLDTDETETD--------DPDWDD 177
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+ G IV +R + ++ ++TCSAGIA NKML+KL SG KP QQT + +V+ L
Sbjct: 178 IAMLIGSEIVRTVRAAIREKLKYTCSAGIAQNKMLSKLGSGHKKPNQQTVIRNRAVQQFL 237
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
K++ LGGK G + V DLL + L++ G TGTW+ N+ RG
Sbjct: 238 SGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLVPMEHLKQKLGEETGTWVHNVIRGNDT 297
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTL 361
+V +R KS S KSF ++ T WL ++ RL + + +NKR T+
Sbjct: 298 SDVNSRTQIKSMLSAKSFRP--SINTPEQANRWLRIFVADIHSRLVEEGVLENKRRPKTI 355
Query: 362 TLH 364
LH
Sbjct: 356 NLH 358
>gi|334325369|ref|XP_001362838.2| PREDICTED: DNA polymerase iota [Monodelphis domestica]
Length = 738
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 173/386 (44%), Gaps = 42/386 (10%)
Query: 3 VARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNY 62
V S+ R+I HVDLDCFY QVE P+L+G P V Q ++ YEAR
Sbjct: 41 VVSAGSASYRVIVHVDLDCFYAQVEMISHPELKGKPLGVQQ-----KYLVVTCNYEARKL 95
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDE 121
GVK+ M +AKE CPQ+ LV DL+ YR +V +L ER DE
Sbjct: 96 GVKKLMSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDE 149
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
++D+T E L + + V + H+ +S + ND
Sbjct: 150 NFVDVTQTVEKRLQQLQSDDYSGV---VVSGHVYNNQSVNLNDILHV------------- 193
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
L G I E+R + + T AG+A NK+L+KL SG KP QQT + S + L
Sbjct: 194 --RLLIGSQIAEEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDL 251
Query: 242 LDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
+DSL IK+M +G K L++ LG+ +V DL FS L++ G + + ++ G
Sbjct: 252 IDSLDHIKQMPGIGFKTTKRLES-LGINSVHDLQTFSPKILEKELGISVAQRIQKLSFGE 310
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V P+S SF + + + + +L L R+C+D R HT
Sbjct: 311 DNSPVTPSGPPQSFSEEDSF---KKCSSEVEAKKKIEELLASLLNRVCND----GRKPHT 363
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
+ L F S +R+ S+ CP+
Sbjct: 364 IRLIIRRFSSDRHFNRE---SRQCPI 386
>gi|301757741|ref|XP_002914721.1| PREDICTED: DNA polymerase iota-like [Ailuropoda melanoleuca]
Length = 770
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 178/381 (46%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS +R+I HVDLDCFY QVE P+L+G P V Q ++ YEAR GVK+
Sbjct: 79 SSSSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQ-----KYLVVTCNYEARKLGVKKL 133
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 134 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 187
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +++ D H L+
Sbjct: 188 TEMVEKRLQQL---QSDELSALTVSGHVYN-------------NQYINLHDIVHIRLLV- 230
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + + + L+ SL
Sbjct: 231 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVLIQSLS 289
Query: 247 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+++M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 290 HVREMPGIGYKTAKRLE-ALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 348
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 349 TPSGPPQSFSEEDSF---KKCSSEVEAKNKVEELLASLLNRVC----QDGRKPHTIRLVI 401
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S + SR+ S+ CP+
Sbjct: 402 RRYSSENHCSRE---SRQCPI 419
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 167/379 (44%), Gaps = 83/379 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I H+D+D F+ VEQ P LRGLP AV GGG + A YEAR YGV+
Sbjct: 3 RKIIHIDMDAFFASVEQHDNPSLRGLPIAV-------GGGEARGVVAAASYEARRYGVRS 55
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G AK++CP + V K YR ++ RA E Y DL
Sbjct: 56 AMAGAMAKQLCPSLIFV-------KPRFDRYREVSMQI-----------RAIFHE-YTDL 96
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
+ P SLDE D K L
Sbjct: 97 VE----------PLSLDE-----------------------------AYLDVTTNKKDLP 117
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP + L L
Sbjct: 118 SATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPQEILDFLAPLD 177
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IKK + GK+ + G+ T DL S ++LQ +G N G + + IARGI VQ
Sbjct: 178 IKKFYGI-GKVTAQKMYQKGIFTGADLRAKSLEELQTYFG-NNGEYFYQIARGIHLSAVQ 235
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
L KS G +F +T + + +L + +EL E + L++ K +A T+TL
Sbjct: 236 PFRLRKSIGVEHTF------ETNITSERFLEKPLKELCEEVALRLKEKKLLAKTVTL--- 286
Query: 367 AFKSSDSDSRKKFPSKSCP 385
K SD +++ S+S P
Sbjct: 287 --KLKYSDFKQQTRSRSIP 303
>gi|452984835|gb|EME84592.1| hypothetical protein MYCFIDRAFT_203083 [Pseudocercospora fijiensis
CIRAD86]
Length = 667
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 183/421 (43%), Gaps = 78/421 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IAH+DLD FY Q E + P AV Q+ GLIA+ Y AR YG+ R +
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLDVDPDQPLAVQQWQ-----GLIAINYPARAYGLNRHVTVT 97
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVV-----SIL 108
EAKE CP I V +A K L YR +++ S+
Sbjct: 98 EAKEKCPDIICQHVATWKEGDTKWSYSDDAFKEIATRKVSLDPYRIESRKILATIKESLP 157
Query: 109 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 163
A K + E+ASIDEV+LDL+ ++L + P+ D+ E K L+ K
Sbjct: 158 ADKQKVEKASIDEVFLDLSAHVHSLLLQRYPQLDAPPPYDDPTEPLPKPPTTALDWKADA 217
Query: 164 --DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 221
D T E D D D ++ IV ++R Q+ ++ ++TCSAGI+ NKMLAKL
Sbjct: 218 LVDLDNTHNE---EDDPDWDDVVMLIASEIVRDVRAQIFRKLKYTCSAGISRNKMLAKLG 274
Query: 222 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 281
SG GGK G + +V +LL S ++L
Sbjct: 275 SG---------------------------SATGGKFGDEVVAAFNTDSVSELLAVSIEQL 307
Query: 282 QESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLC 340
++ G +G+WL+N+ RG EV R KS S KSF P + + WL
Sbjct: 308 KKQLGDGSGSWLYNVIRGEDDSEVNPRTQIKSMLSAKSFRPSINSFEVACK---WLRIFV 364
Query: 341 EELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN 399
++ RL + + +NKR T+ +H + +R SK P+ G ++ F+
Sbjct: 365 ADIFGRLVEEGVLENKRRPKTINIH----HRQGAQTR----SKQAPIPLGKTVTEDALFD 416
Query: 400 L 400
L
Sbjct: 417 L 417
>gi|134112233|ref|XP_775092.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257744|gb|EAL20445.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 708
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 171/385 (44%), Gaps = 62/385 (16%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IAH D+D Y Q EQ + +P Q+ +IAV Y AR YG+KR ++A
Sbjct: 33 IAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQ-----SIIAVNYPARKYGIKRFTSIEDA 87
Query: 74 KEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK---GRC 114
K++CP + + V R K L YR ++++I K G
Sbjct: 88 KKMCPHLRIQHVATYRNGESEAGYWDDVDPRTHKVSLDVYRRESLKILAIFKEKIPRGEI 147
Query: 115 ERASIDEVYLDLTD-------AAEAMLAETPPESLDEVDEEALKSH------------IL 155
E+ASIDE +LDLT AA L++ P ++ + +D I
Sbjct: 148 EKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGSVFPID 207
Query: 156 GLESKDGNDSKATVKE---------WLCRCDADHRDKL----LACGVLIVTELRMQVLKE 202
G E G D + +E + R +RD L G +++ +R +V
Sbjct: 208 GKEDGSGTDHQEDKEEDERSEDGDEFDGRTSGSNRDSWEDWALCMGGELMSNVREEVYLR 267
Query: 203 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 262
+TC+AGIAHNK +AKL S KP QT + ++V L+ ++ LGGKLG ++
Sbjct: 268 LHYTCTAGIAHNKAMAKLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIA 327
Query: 263 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 322
+ G T + S D++Q +G W++NI RGI EV R+ KS + KS
Sbjct: 328 QQFGAKTRRTV---SLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLASKSIRP 383
Query: 323 PRALKTVASVQHWLNQLCEELSERL 347
A+ + WL+ L EL+ RL
Sbjct: 384 --AVTSPQQGHQWLSILAGELNVRL 406
>gi|392564568|gb|EIW57746.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 699
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 182/431 (42%), Gaps = 70/431 (16%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY EQ + LP V Q++ LIAV Y AR YG+ R +
Sbjct: 54 RVVALCDSDAFYAACEQVRLALDPALPLVVQQWD-----SLIAVNYPARTYGISRMDKIR 108
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARK---G 112
+A++ CP + +V V R K L YR +++ + G
Sbjct: 109 DARKRCPDLVVVHVATYREGEAEPGYWENPDTRTHKVSLDHYRRESMKIIQLFKEGLPGG 168
Query: 113 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHIL---GLES--- 159
E+ASIDE ++D T LA PP++ + VD + GL +
Sbjct: 169 EVEKASIDEAFIDFTRPVREELLKRYPYLAVVPPDAPNGVDSPLPPPPPISWDGLATIVP 228
Query: 160 --------------------KDGNDSKATVKEWLCRCDADH--------RDKLLACGVLI 191
D K+ + E + D L+ +
Sbjct: 229 VNPPKEPPKEQDLPAGESVESTAEDQKSNISEPTDDDEVVEEDDSLTTWHDVALSIAAEL 288
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
+ +R + + +T SAGIA NK LAKL + KP QT + +++ L + +K++
Sbjct: 289 MLRIREDIRTKLGYTTSAGIARNKFLAKLTASYKKPMNQTVLRNAAIPNYLKPMAFQKIR 348
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LL 310
LGGKLG +L E V+TVGDLL S +++Q +G ++ W++ I RGI EV+ + +
Sbjct: 349 FLGGKLGKALAEEYDVSTVGDLLTISLEEMQRKFGEDS-IWVYEILRGIDRSEVKEKSAV 407
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFK 369
KS + K+ P P + HW+ L EL+ RL E N + T+ LH
Sbjct: 408 NKSMLASKNLPQP--ITKATQGYHWIRVLAAELALRLNEAREANTALWPKTIVLHIRQGY 465
Query: 370 SSDSDSRKKFP 380
+ + FP
Sbjct: 466 ETSKSKQTPFP 476
>gi|351700533|gb|EHB03452.1| DNA polymerase iota [Heterocephalus glaber]
Length = 696
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 199/451 (44%), Gaps = 56/451 (12%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R+I HVDLDCFY QVE P+L+ P V Q +I YEAR GVK+ M+
Sbjct: 27 SRVIVHVDLDCFYAQVEMISNPELKNKPLGVQQ-----KSFVITCNYEARKLGVKKCMKV 81
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT
Sbjct: 82 KDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLGEFTPLVERLGFDENFVDLTQM 135
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E L + DE+ + H+ +S D +D+ L G
Sbjct: 136 VEKRLQQLQS---DELAAVTVSGHLYNNQSVDLHDTMHV---------------RLLIGS 177
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK 248
I E+R + + T AGIA NK+LAKL SG+ KP QQT + S + L+ +L +K
Sbjct: 178 QIAAEMRKAMYNQLGLTGCAGIASNKLLAKLVSGVFKPNQQTVLLPESCQDLILALNHVK 237
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G K L+ LG+ +V DL FS L++ +G + + ++ G V
Sbjct: 238 EIPGIGYKTAKCLE-ALGIHSVHDLQTFSSKILEKEFGISLAQHIQKLSFGEDNSSVIPS 296
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
P+S +SF + + + + +L L R+C Q+ R HT+ L A
Sbjct: 297 GQPQSFSEEESF---KKCSSEVEAKKKIEELLSILLNRVC----QDGRKPHTVRL-AIRR 348
Query: 369 KSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
SS SR+ S+ CP+ + GT T +L ++ F VK
Sbjct: 349 SSSKYYSRE---SRQCPIPCHIIQKLGTGNCDVMT-SLVNILMKLFRNMVNVKMP----- 399
Query: 423 GWRITALSVSASKIVPVLSGTCSIMKYFNGP 453
+ +T LSV + ++ M Y+ P
Sbjct: 400 -FHLTLLSVCFCNLKALIRAKKGPMDYYLTP 429
>gi|354499580|ref|XP_003511886.1| PREDICTED: DNA polymerase iota [Cricetulus griseus]
Length = 708
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 172/380 (45%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+ M
Sbjct: 20 SSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLM 74
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 75 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPVVERLGFDENFVDLT 128
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P DE+ + HI +S + ++ L
Sbjct: 129 EMVEKRLQQLP---RDEILSVTVSGHIYNNQSVNLHNITHV---------------RLVV 170
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 171 GSQIAAEIREAMYHQLQLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQDLIHSLNH 230
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK+M +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 231 IKEMPGIGYKTAKRLE-VLGINSVRDLQTFSVKTLEKELGISVAQRIQKLSFGEDNSPVT 289
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + A + + +L L +R+C D R HT+ L
Sbjct: 290 PSGPPQSFSEEDTF---KKCSSEAEAKTKIEELLSSLLKRVCHD----GRKPHTIRLVIR 342
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ + S+ CP+
Sbjct: 343 RYSEKHCNRE----SRQCPI 358
>gi|156378071|ref|XP_001630968.1| predicted protein [Nematostella vectensis]
gi|156217999|gb|EDO38905.1| predicted protein [Nematostella vectensis]
Length = 403
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 172/376 (45%), Gaps = 37/376 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H+D+DCFY QVE + P LR P V Q + L+ Y AR G+K+ +
Sbjct: 3 RVIVHIDIDCFYAQVEMIRNPCLRDRPVGVSQKHI-----LVTCNYVARAMGLKKLISLA 57
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
EAK+ CP + ++ DL+ YR S V +L R R ER +DE Y+D+++
Sbjct: 58 EAKKKCPDLVIIN------GEDLTKYREFSSRVTKLLRRFALRVERLGLDENYVDVSELV 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ + P S V I G G+ ++ +C C R L G +
Sbjct: 112 QERMKHAPRGSYIAV------GCIYGDNILKGSSNE------VCPCGCHER---LTVGSV 156
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +ELR + E T AGIAHNK+LAK+A NKP +QT + V+GL+ LP++K+
Sbjct: 157 IASELRKAIFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTLLYTERVEGLMGLLPVRKV 216
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L LG+TT+ +L + S+ L + L ++ G +V +
Sbjct: 217 PGIGRSTCARL-GSLGITTIAELQECSKKALLNEFNSQEVRILHALSHGADDSQVSTDSM 275
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
PKS S+ L ++ SV+ L L L R+ D H T+ + +
Sbjct: 276 PKSISEEDSYSN---LCSLESVKTNLRVLIGNLIPRITED------TGHPQTVRLAIRRG 326
Query: 371 SDSDSRKKFPSKSCPL 386
+ K S+ CP+
Sbjct: 327 GQAPGVYKKESRQCPV 342
>gi|302767294|ref|XP_002967067.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
gi|300165058|gb|EFJ31666.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
Length = 332
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 164/359 (45%), Gaps = 48/359 (13%)
Query: 18 DLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVC 77
D+DCFY Q E ++P LR P V Q ++ Y AR GV + + DEAK C
Sbjct: 1 DVDCFYAQSEILRRPWLRDRPVGVTQKFL-----VVTSNYVARQLGVPKMVPVDEAKRCC 55
Query: 78 PQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAET 137
+ L+ DL+ YR A ++ ++ R G E+ +DE +D+T+ +A
Sbjct: 56 SDLVLIN------GEDLTPYRYASKLIMEVIKRFGTVEKRGLDECAVDVTEEVLKRVASA 109
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
P S H+LG G+ + A D LL G + E+R
Sbjct: 110 NPTSF--------VGHVLG-----GDLTT----------QATQGDLLLMVGTQLAAEIRC 146
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
V KET + CS GI+HNKMLAK+A +NKP +QT + S+V + LP++K+ +G +
Sbjct: 147 AVEKETGYQCSCGISHNKMLAKMACSLNKPDKQTCITQSAVNDFIVPLPVRKIPGVGRQT 206
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
+L+ E+GV T+GD+ + +L +G G L++ RG VQ + KS
Sbjct: 207 EATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYSRVQDKGFSKSLSVE 265
Query: 318 KSFPGPRALK-------------TVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
SF +L T +Q L+ L +L RL D + +R T T+
Sbjct: 266 DSFKPCSSLDQAKVRLNSSCIRVTSVCLQEILSCLAPDLIARLDEDKAETERTPKTFTV 324
>gi|296236545|ref|XP_002763376.1| PREDICTED: DNA polymerase eta-like [Callithrix jacchus]
Length = 191
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 87/123 (70%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A + +DCF+VQVEQR+ P R P AVVQY WKGGG+IAV YEA +GV RSM D
Sbjct: 7 RVVALMGMDCFFVQVEQRQNPHFRNKPCAVVQYKSWKGGGIIAVSYEAYAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV + GKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESCGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AML 134
L
Sbjct: 127 ERL 129
>gi|345305688|ref|XP_001509638.2| PREDICTED: DNA polymerase iota-like [Ornithorhynchus anatinus]
Length = 831
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 177/388 (45%), Gaps = 45/388 (11%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
+PVA S+ R++ H+DLDCFY QVE P+L+G P V Q ++ Y+AR
Sbjct: 135 VPVA---STPHRVVVHLDLDCFYAQVEMIHNPELKGKPLGVQQ-----KYLVVTCNYDAR 186
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASI 119
GVK+ M +AKE CPQ+ LV DL+ YR +V +L ER
Sbjct: 187 KLGVKKLMSIRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFCPVVERLGF 240
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE ++D+T+ E + + P V ++ H+ ++ + ND
Sbjct: 241 DENFVDITEMVEKRMQQLPSNDCSTV---SVVGHVYNNQTVNPNDILHV----------- 286
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
L G I E+R + T AG+A NK+L+KL SG KP QQT + S +
Sbjct: 287 ----RLLIGSQIAAEMREAIHSRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQ 342
Query: 240 GLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L+ SL IK+M +G K L++ LGV++V DL FS D L++ G + + ++
Sbjct: 343 DLISSLDHIKQMPGIGFKTTKRLES-LGVSSVHDLQTFSPDILEKELGISVAQRIQKLSF 401
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G V P+S S R T + + +L L ER+ D R
Sbjct: 402 GEDNSPVTPSGPPQSFSEEDSI---RKCSTEVDAKKKIEELLTNLLERVYKD----GRKP 454
Query: 359 HTLTLHASAFKSSDSDSRKKFPSKSCPL 386
HT+ L F + S +R+ S+ CP+
Sbjct: 455 HTIRLTIRRFSAEKSFNRE---SRQCPI 479
>gi|344269856|ref|XP_003406763.1| PREDICTED: DNA polymerase iota [Loxodonta africana]
Length = 713
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 175/381 (45%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ +R+I HVDLDCFY QVE P+L+G P V Q ++ YEAR GVK+
Sbjct: 29 STSSRVIVHVDLDCFYAQVEMISHPELKGKPLGVQQ-----KYFVVTCNYEARKLGVKKL 83
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V ++ ER DE ++D+
Sbjct: 84 MSVRDAKEKCPQLVLV------NGEDLTRYRETSYKVTELMEEFSPLVERLGFDENFVDI 137
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + E V + H+ ND + D H L
Sbjct: 138 TELIEKRLQQLQSEEHSSV---TVSGHVY-------NDQSINLH------DISHIR--LL 179
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 180 VGSQIAAEIREAIYNKLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLIHSLN 239
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 240 HIKEIPGIGYKTSKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDTSPV 298
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + + + +L + L R+C Q+ R HT+ L
Sbjct: 299 TPSGPPQSFSEEDSF---KKCSSEDEAKQKIAELLDSLFNRVC----QDGRKPHTVRLII 351
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S SR+ S+ CP+
Sbjct: 352 RRYSSEKHYSRE---SRQCPV 369
>gi|302833114|ref|XP_002948121.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
gi|300266923|gb|EFJ51109.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
Length = 1251
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 35/294 (11%)
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
D ++LL G ++ +LR +L+E ++CSAG+AH K++AKL SG++KP QQT V +V
Sbjct: 155 DPHERLLVAGAVVAAQLRSALLRELGYSCSAGVAHYKLMAKLGSGLHKPNQQTVVLARAV 214
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
LL +LP+ K++ LG K G +Q LG+ T+G+L +L+ YG L +A
Sbjct: 215 PTLLRNLPLAKLRSLGPKFGEQVQEGLGIQTLGELWSVPASRLESLYGPEAAAGLMRLAA 274
Query: 299 GI-SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
G+ G+ V RL PK+ GK+F G AL+ + V L QL E+SER+ +D + R+
Sbjct: 275 GMDEGDMVSPRLAPKTLSCGKTFRGSSALQDIRQVSPRLMQLAAEMSERIEADRRDHGRL 334
Query: 358 AHTLTL--------------------HASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQED 396
LTL + + S+SC L R T I E
Sbjct: 335 PTQLTLTLQTGAPGLAGAGAGEAAGGPGAGGGGAGGGGNGSTHSRSCRLARTSTECIAEV 394
Query: 397 TFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 450
L V+ + SGWRIT LS++ S+ SG ++ ++
Sbjct: 395 ATGL-------------VRKWAAERSGWRITGLSITTSRFDSAPSGPSTLARFL 435
>gi|116193781|ref|XP_001222703.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
gi|88182521|gb|EAQ89989.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 168/374 (44%), Gaps = 30/374 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM-RG 70
R++ H+DLDCFY Q E + P AV Q W G + + + +R + R + +
Sbjct: 42 RVVTHIDLDCFYAQAEMVRLGVPEDRPLAVQQ---WCG---LPIVHRSRIRELIRDIAKA 95
Query: 71 DEAKEVCPQIELVQVP---------VARGKADLSSYRNAGSEVVSIL-----ARKGRCER 116
+ P L P +A K L YR +++++ + + E+
Sbjct: 96 GPHRCQLPSTCLWDWPAYRPDSAENIATDKVSLDPYRLESRRILAVIKEHLPSHLQKVEK 155
Query: 117 ASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV-----KE 171
A IDEV+LDL+ A+L E PE + H L + D KA +E
Sbjct: 156 AGIDEVFLDLSAHVHAVLLERFPELAGGPPDGDPFEH-LPMPPVSALDWKADALIDLDEE 214
Query: 172 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 231
D D D IV +R+ + + +TC+AGIA NK+L+KL S KP QQT
Sbjct: 215 RAEFDDPDWDDVAFLVASEIVRNIRVAIRDKLRYTCAAGIAKNKLLSKLGSAHKKPNQQT 274
Query: 232 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 291
+ +V+ L K + LGGKLG + +V +LL S D+L+ +G TG
Sbjct: 275 VIRNRAVRQFLSGFKFTKFRNLGGKLGEQVSQTFKTESVQELLAVSIDQLKSKFGAETGA 334
Query: 292 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD- 350
W++N RG EV +R KS S KSF ++ TV WL ++ RL +
Sbjct: 335 WVYNTLRGYDTSEVNSRTQIKSMLSAKSFRP--SINTVDQAMKWLRIFAADIFARLVDEG 392
Query: 351 LEQNKRIAHTLTLH 364
+ +NKR T+ LH
Sbjct: 393 VLENKRRPKTINLH 406
>gi|297713023|ref|XP_002833023.1| PREDICTED: DNA polymerase eta, partial [Pongo abelii]
Length = 492
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 14/240 (5%)
Query: 216 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +
Sbjct: 1 VLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQ 60
Query: 276 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 335
F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ W
Sbjct: 61 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 120
Query: 336 LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQ 394
L QL +EL ERL D N R+A L + D R + C L RY K+
Sbjct: 121 LLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMS 176
Query: 395 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 454
D F + + + G++T+ S +T L + A+K +C+ + F D
Sbjct: 177 HDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 227
>gi|440902693|gb|ELR53451.1| DNA polymerase iota, partial [Bos grunniens mutus]
Length = 694
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 176/381 (46%), Gaps = 46/381 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P A + ++ YEAR GVK+
Sbjct: 10 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLAYL---------VVTCNYEARKLGVKKL 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 61 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 114
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ N+ ++ L +LL
Sbjct: 115 TEMVEKRLEQL---QSDELSALTVSGHVY-------NNQPVNPRDML-------HIRLLV 157
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 158 -GSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIHSLN 216
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK+M +G K L+ LG+++V DL F L++ G + + ++ G V
Sbjct: 217 HIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKILEKELGISVAQRIQKLSFGEDDSPV 275
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 276 TPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIRLII 328
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S +R+ S+ CP+
Sbjct: 329 RRYSSEKHYNRE---SRQCPI 346
>gi|392594879|gb|EIW84203.1| DNA polymerase eta [Coniophora puteana RWD-64-598 SS2]
Length = 623
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 181/412 (43%), Gaps = 59/412 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ D D FY E+ + P V Q+ LIAV Y AR YG+ R +
Sbjct: 47 RVVGLCDSDAFYAACERVRLNLSEDAPLVVQQWE-----SLIAVSYPARKYGISRMDKIK 101
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---KG 112
+AK+ CP + V V + K L YR ++++++ G
Sbjct: 102 DAKKKCPDLVSVHVATYKEGEKEPGYWDDIDTRTHKVSLDLYRRESAKIMNVFKEMLPNG 161
Query: 113 RCERASIDEVYLDLTDAAEAMLAE---------------------TPPESLDEVDEEALK 151
E+ASIDE ++DLT + E +PP LD D K
Sbjct: 162 EIEKASIDEAFIDLTQPVRDTILERYPYLANIPPNAPQGADTPLPSPPLELDWAD----K 217
Query: 152 SHILG-LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAG 210
H++ L S DG+DS E+ D L +T++R QVL ++ SAG
Sbjct: 218 VHLIPILPSDDGDDSPKDESEF----PPTWHDVALCIAAEFMTKMRKQVLDTLGYSTSAG 273
Query: 211 IAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTV 270
+A NK LAKL++ + KP Q+ + ++ L + +K++ LGGKLG + +E V++V
Sbjct: 274 LARNKALAKLSASVRKPNGQSILRNDAIPNYLRPMAFQKIRFLGGKLGKAFADEYDVSSV 333
Query: 271 GDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL-LPKSHGSGKSFPGPRALKTV 329
GD+L S D++Q +G W++ + RGI EV+ + KS + K+ P P +
Sbjct: 334 GDILTVSLDEMQSKFG-EESLWVYELVRGIDRSEVKEKTAYFKSMLASKNLPKP--ITKS 390
Query: 330 ASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 380
+ W+ L EL+ RL E + T+ LH + + FP
Sbjct: 391 SEGPQWIRVLAAELTLRLNEARETMPSLWPKTIALHLRKGYEASRSKQAPFP 442
>gi|67010005|ref|NP_001019863.1| DNA polymerase iota [Bos taurus]
gi|66393909|gb|AAY46031.1| DNA polymerase iota [Bos taurus]
Length = 747
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 174/384 (45%), Gaps = 48/384 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 59 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 113
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 114 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 167
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL-- 184
T+ E L + DE+ + H+ + + RD L
Sbjct: 168 TEMVEKRLEQL---QSDELSALTVSGHVYNNQP------------------VNPRDTLHI 206
Query: 185 -LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+
Sbjct: 207 RLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIH 266
Query: 244 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
SL IK+M +G K L+ LG+++V DL F L++ G + + ++ G
Sbjct: 267 SLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGEDD 325
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V P+S SF + + + + +L L R+C Q+ R HT+
Sbjct: 326 SPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIR 378
Query: 363 LHASAFKSSDSDSRKKFPSKSCPL 386
L + S +R+ S+ CP+
Sbjct: 379 LIIRRYSSEKHYNRE---SRQCPI 399
>gi|213410204|ref|XP_002175872.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
gi|212003919|gb|EEB09579.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
Length = 884
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 172/389 (44%), Gaps = 68/389 (17%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +++ HVD D FY QVE + +P AV Q++ LIAV Y AR YG+ R
Sbjct: 24 SPFKVVVHVDQDAFYAQVETVRLKLDHSVPLAVQQWD-----NLIAVNYAARPYGITRFD 78
Query: 69 RGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARKG 112
+ AK+ CP++ L V + K L YRN +++ IL++
Sbjct: 79 TAENAKKKCPELNLAHVQTWKVGEREPKYHEKPEWESHKVCLDMYRNESKKILGILSKYS 138
Query: 113 R-CERASIDEVYLDLTDAAEAMLAE------TPPESL-------------DEV-----DE 147
+ ++ASIDE ++DLT + L + PPE L +E+ +E
Sbjct: 139 KLVKKASIDESFVDLTAEIKKKLIQDYSFLGVPPEDLSLPLPTAPTVLWTEELGRVFGEE 198
Query: 148 EALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 207
E L S E+K+G D W + L G IV E+R ++ +TC
Sbjct: 199 EGLLS-----EAKNGGD-------W--------DEVFLHYGARIVKEIRNEIFNTLGYTC 238
Query: 208 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 267
SAGI+ N ML+K+ S NKP +QT + S V L + + +++ GGK G L +L
Sbjct: 239 SAGISRNAMLSKILSSKNKPNKQTVLLNSMVDHYLADVRLSELRLFGGKYGEELGKKLNA 298
Query: 268 TTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 327
+ D+ D+L G +WN+ GI E+ +S S K+F + LK
Sbjct: 299 EYIKDIRAIPMDELIRILGDRDAQVVWNVCNGIDNSEITNVNNTQSMLSAKNFLRSK-LK 357
Query: 328 TVASVQHWLNQLCEELSERLCSDLEQNKR 356
+ W +L R D+EQ KR
Sbjct: 358 SSEEAMKWFRVFASDLMSRYM-DVEQIKR 385
>gi|296473688|tpg|DAA15803.1| TPA: DNA polymerase iota [Bos taurus]
Length = 747
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 174/384 (45%), Gaps = 48/384 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 59 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 113
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 114 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 167
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL-- 184
T+ E L + DE+ + H+ + + RD L
Sbjct: 168 TEMVEKRLEQL---QSDELSALTVSGHVYNNQP------------------VNPRDTLHI 206
Query: 185 -LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+
Sbjct: 207 RLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIH 266
Query: 244 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
SL IK+M +G K L+ LG+++V DL F L++ G + + ++ G
Sbjct: 267 SLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGEDD 325
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V P+S SF + + + + +L L R+C Q+ R HT+
Sbjct: 326 SPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIR 378
Query: 363 LHASAFKSSDSDSRKKFPSKSCPL 386
L + S +R+ S+ CP+
Sbjct: 379 LIIRRYSSEKHYNRE---SRQCPI 399
>gi|157821829|ref|NP_001099607.1| DNA polymerase iota [Rattus norvegicus]
gi|149064586|gb|EDM14789.1| polymerase (DNA directed), iota (predicted), isoform CRA_c [Rattus
norvegicus]
Length = 732
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+ M
Sbjct: 45 ASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLM 99
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 100 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 153
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P DEV + H+ +S + + S LA
Sbjct: 154 EMVEKRLQQLPS---DEVPSVTMSGHVYNNQSVNLHSSTHV---------------RLAV 195
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 196 GSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 255
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK+M +G K L+ LG+ +V DL F L++ G + + ++ G V
Sbjct: 256 IKEMPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKSPVT 314
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 315 PSGPPQSFSEEDTF---KKCSSEVEAKTKIEELLSSLLNRVCHD----GRKPHTIRLVIR 367
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 368 RY----SDKHCNRESRQCPI 383
>gi|322783253|gb|EFZ10839.1| hypothetical protein SINV_80489 [Solenopsis invicta]
Length = 577
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 163/348 (46%), Gaps = 40/348 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
+ I H+D+DCFY QVE P+L G P V Q N ++ Y AR YG+K+ M
Sbjct: 14 KTIIHLDVDCFYAQVEMINHPELEGKPLGVQQKN-----IVVTSNYLAREYGIKKCMSVQ 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA +CP++ LV DL++YRN +++ IL + ER D+ +LD+T
Sbjct: 69 EALRLCPELALV------NGEDLTNYRNYSTKITEILHQFTPLVERLGFDDNFLDVTSIV 122
Query: 131 EAMLAETPPESLD----EVDEEALK--SHILG-LESKDGNDSKATVKEWLCRCDADHRDK 183
E L LD ++ E LK S I G LE + C C R
Sbjct: 123 EKQLKSQNDTELDMSNSSIEFEDLKEVSKIFGPLEEE-------------CPCGCHTR-- 167
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G I E+R ++ +E TCSAGIAHNK+LAKLA +NKP QQT + S LL
Sbjct: 168 -LMIGSKIAAEIRNRIYEELHLTCSAGIAHNKLLAKLAGSLNKPNQQTLIFPCSGPMLLS 226
Query: 244 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
++ + K+ +G K T L + TV DL + + L+ G + L + A GI
Sbjct: 227 TIGSVSKIPGVGQK-TTELLLSNNIRTVDDLRRLPLENLELKIGVDLARRLKDNAEGIDD 285
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
V+ +S G F +++ VA V+ L L L+E D
Sbjct: 286 TVVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 330
>gi|50547727|ref|XP_501333.1| YALI0C01573p [Yarrowia lipolytica]
gi|49647200|emb|CAG81630.1| YALI0C01573p [Yarrowia lipolytica CLIB122]
Length = 640
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 146/490 (29%), Positives = 222/490 (45%), Gaps = 82/490 (16%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D F+ QVEQ + G P A Q++ GLIAVGY AR G+ R MR EA
Sbjct: 26 IVHLDMDAFFAQVEQVRLGLPPGTPVACRQWD-----GLIAVGYAARASGITRHMRAPEA 80
Query: 74 KEVCPQIELVQVP-VARG---------------KADLSSYRNAGSEVVSILARKGRC-ER 116
+++CP + + RG K L YR AG +V++I+ + E+
Sbjct: 81 QKLCPNLVMAHAASFKRGEDMWEYHANPSADDYKISLDPYRQAGKKVLNIVKQYSSVVEK 140
Query: 117 ASIDEVYLDLTDAA--EAMLAETPPESLDEVDEEAL----KSHILGLESK--DGNDSKAT 168
AS+DE YLDL E M+A + LD + L ++H L + DG
Sbjct: 141 ASVDESYLDLGPRIFNEIMIAFPQLQLLDNDLDNFLPAPPRAHELKIRGYNWDGLGVLEI 200
Query: 169 VKEWLCRCDADHR-----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
V + + R D D R D +L G I +R QV +E ++TCSAGIA + +
Sbjct: 201 VTD-VSRFDPDIRVHDDTMVTDWDDLVLMFGARISKRMREQVYEELKYTCSAGIARCRSV 259
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKLAS NKP QT V ++ L + + +GGKLG + +LG L K S
Sbjct: 260 AKLASAQNKPNNQTVVRAGALNNYLKKKSLTDIGGMGGKLGEEVLEKLG------LDKES 313
Query: 278 EDKLQESYGFNTGTW------------LWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 325
+D + + + ++N+ARG ++ R+ KS S K+F
Sbjct: 314 KDNITQVQALSKQQLQQKLQNASLTEKVFNLARGNLYRGLKTRIELKSMLSAKNF-ARVP 372
Query: 326 LKTVASVQHWLNQLCEELSERLCSDLEQNK-----RIAHTLTLHASAFKSSDSDSRKKFP 380
LK + WL EL+ R+ +E K R T++L + FK SR+
Sbjct: 373 LKDRKEAELWLVVFAGELAMRI---VEHEKELGTCRRPRTVSLQHARFKPMVKRSRQ--- 426
Query: 381 SKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 440
+ PL + T K++E+ LF AG++ + + + I+ LS+S + V +
Sbjct: 427 -QDLPLVH-TNKLKEE---LFAAGVK----LLKLIENEPEHDAYPISMLSLSVTGFVELP 477
Query: 441 SGTCSIMKYF 450
+G SI +F
Sbjct: 478 AG-ASIGHFF 486
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 181/417 (43%), Gaps = 85/417 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLIAVG-YEARNYGVKR 66
R I H+D+D FY VEQ P L G P AV GG G++A YEAR YGV
Sbjct: 3 RKIIHIDMDAFYASVEQHDNPSLLGKPIAV-------GGSEPRGVVATASYEARKYGVHS 55
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G A+ +CP + V+ R K S RN ++ +
Sbjct: 56 AMSGVIARRLCPTLIFVKPRFERYKEISSRIRN----------------------IFYEY 93
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE D K L+
Sbjct: 94 TDLVE-------PLSLDE-----------------------------AYLDVTTNKKNLS 117
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP S V L+ L
Sbjct: 118 SATLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPSKVLSFLEGLD 177
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+KK + GK+ + G+ T DL S ++LQ +G N+G + + IARGI VQ
Sbjct: 178 VKKFYGI-GKVTAEKMYQKGIFTGADLRAKSLEELQSYFG-NSGEYFYQIARGIHLSPVQ 235
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
L KS G +F K ++S + ++ + ++LSE + L + K +A T+TL
Sbjct: 236 PFRLIKSIGVEHTFE-----KNISS-EIFMTEPLQQLSEEVSLRLSKKKLLAKTVTL--- 286
Query: 367 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGVKTQGSHY 421
K SD + + S++ P G + L+Q LRE + GV +Y
Sbjct: 287 --KLKYSDFKIQTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSLSNFNY 341
>gi|426253840|ref|XP_004020599.1| PREDICTED: DNA polymerase iota isoform 1 [Ovis aries]
Length = 750
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 173/381 (45%), Gaps = 43/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 61 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKY-----LVVTCNYEARKLGVKKL 115
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 116 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 169
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + D+ L
Sbjct: 170 TEMVEKRLEQL---QSDELSALTVSGHVYNNQSVNPRDTLHI---------------RLL 211
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 212 VGSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLN 271
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 272 HIKEIPGIGYKTAKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDDSPV 330
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF ++ ++ L L R+C Q+ R HT+ L
Sbjct: 331 TPSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLL----NRVC----QDGRKPHTVRLVI 382
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S +R+ S+ CP+
Sbjct: 383 RRYSSEKLCNRE---SRQCPI 400
>gi|426253842|ref|XP_004020600.1| PREDICTED: DNA polymerase iota isoform 2 [Ovis aries]
Length = 734
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 174/384 (45%), Gaps = 49/384 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 45 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 99
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 100 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 153
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL-- 184
T+ E L + DE+ + H+ +S + RD L
Sbjct: 154 TEMVEKRLEQL---QSDELSALTVSGHVYNNQS------------------VNPRDTLHI 192
Query: 185 -LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G I E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+
Sbjct: 193 RLLVGSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIH 252
Query: 244 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
SL IK++ +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 253 SLNHIKEIPGIGYKTAKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDD 311
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V P+S SF ++ ++ L L R+C Q+ R HT+
Sbjct: 312 SPVTPSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLL----NRVC----QDGRKPHTVR 363
Query: 363 LHASAFKSSDSDSRKKFPSKSCPL 386
L + S +R+ S+ CP+
Sbjct: 364 LVIRRYSSEKLCNRE---SRQCPI 384
>gi|395830769|ref|XP_003788490.1| PREDICTED: DNA polymerase iota isoform 1 [Otolemur garnettii]
Length = 737
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 174/381 (45%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S +R+IAH+DLDCFY QVE P+LR P V Q ++ YEAR +GVK+
Sbjct: 46 SFSSRVIAHLDLDCFYAQVEMISNPELRDKPLGVQQ-----KFSVVTCNYEARKFGVKKC 100
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EAKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MPVREAKEKCPQLVLV------NGEDLTRYREMSYKVTELLKEFSPVVERLGFDENFVDL 154
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ ++ H+ + + +D +LL
Sbjct: 155 TEMVEKRLQQL---QSDELSAVSVSGHVYNNQCINLDDILHV--------------RLLV 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLIHSLN 256
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL S L + G + + ++ G V
Sbjct: 257 HIKEIPGIGYKTTKRLE-ALGINSVHDLQTCSSKILVKELGMSVAHHIQKLSFGEDNSPV 315
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 316 TPSGPPQSFSEEDSF---KKCSSEVEAKKKIEELLASLLNRVC----QDGRKPHTVRLTL 368
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S SR+ S+ CP+
Sbjct: 369 RRYSSEKYCSRE---SRQCPI 386
>gi|426386012|ref|XP_004059489.1| PREDICTED: DNA polymerase iota [Gorilla gorilla gorilla]
Length = 739
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 181/386 (46%), Gaps = 43/386 (11%)
Query: 3 VARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNY 62
V P+SS +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR
Sbjct: 44 VPTPNSS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKL 97
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDE 121
GVK+ M +AKE CPQ+ LV DL+ YR +V +L ER DE
Sbjct: 98 GVKKLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDE 151
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
++DLT+ E L + DE+ + H+ +S + D H
Sbjct: 152 NFVDLTEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHI 195
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L
Sbjct: 196 R--LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 253
Query: 242 LDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
+ SL IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 254 IHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG- 311
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
E + ++P G +SF + K +S N++ EEL L + + Q+ R HT
Sbjct: 312 ---EDNSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHT 365
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
+ L + S R+ S+ CP+
Sbjct: 366 VRLIIRRYSSEKHYGRE---SRQCPI 388
>gi|197244663|dbj|BAG68958.1| DNA polymerase eta [Coprinopsis cinerea]
Length = 641
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 183/422 (43%), Gaps = 61/422 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ D D FY E + + P V+Q++ LIAV Y AR YG+ R +
Sbjct: 45 RVVGLCDSDAFYAACEMVRLGVDKDTPLVVLQWDS-----LIAVNYPARKYGISRMDKKK 99
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 112
+A + CP +++V V + K L YR ++ ++ L
Sbjct: 100 DALKRCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESMKIAALFRELLPGC 159
Query: 113 RCERASIDEVYLDLTDAAEAML-------AETPPESLDEVDEEALKSHI----------- 154
E+ASIDE ++D T +L A+ PP++ + VD
Sbjct: 160 EVEKASIDEAFIDFTKPVREVLLQRYPYLAQVPPDAPNGVDTPLPPPPPISWYGTGDLIP 219
Query: 155 LGLESKDGNDSKATVKEWLCR-------------CDADHRDKLLACGVLIVTELRMQVLK 201
L +G D +T K+ + D L+ +V + R VL+
Sbjct: 220 LTTGPTEGQDQPSTSKQQPAEEAVHDEGLQDGEDANTTWHDVALSIAAGMVMKARKGVLE 279
Query: 202 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 261
+ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++ LGGKLG +L
Sbjct: 280 QLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRFLGGKLGRAL 339
Query: 262 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LLPKSHGSGKS 319
E TVGDLL S D++Q +G ++ W++ I RGI EV+ + L KS + K+
Sbjct: 340 AQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRGIDRSEVKDKGTTLTKSMLASKN 398
Query: 320 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKK 378
P P + + HW+ L EL+ RL + + + + LHA S +
Sbjct: 399 LPKP--ITAASEGYHWIRVLAAELALRLNEARQISPNLWPKNIVLHARKGYESSRSKQAV 456
Query: 379 FP 380
FP
Sbjct: 457 FP 458
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 163/374 (43%), Gaps = 78/374 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I H+D+D F+ VEQ P L+G P AV GGG + A YEAR +GV+
Sbjct: 10 RKIIHIDMDAFFASVEQLDFPHLKGKPIAV-------GGGKERGVIAAASYEARKFGVRS 62
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G AK+ CP EL+ +P YR + I E++
Sbjct: 63 AMSGVVAKKRCP--ELIFMP-----PRFERYRQISQQ---------------IREIFYQY 100
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE D H K
Sbjct: 101 TDLVE-------PLSLDE-----------------------------AYLDVTHNKKNCP 124
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI TE+R ++ ++T T SAGI+ NK +AK+AS NKP Q TV F V+ LD L
Sbjct: 125 SATLIATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSFDEVQDFLDVLD 184
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+K+ + GK+ T G+ T DL S L+E +G N + + +ARGI EV+
Sbjct: 185 VKRFYGI-GKVTTEKMYLKGIFTGKDLRNKSLSFLEEHFG-NHAIYYYQLARGIHLSEVK 242
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
LPKS G+ ++F + + + ++ L + +EL ER+ K I TL + S
Sbjct: 243 PLRLPKSVGAERTF--SKNITSEVFMEKDLYAIAQELHERMAKKGVSGKTI--TLKIKYS 298
Query: 367 AFKSSDSDSRKKFP 380
F S K FP
Sbjct: 299 DF--SVQTRSKTFP 310
>gi|118403518|ref|NP_001027479.2| polymerase (DNA directed) iota [Xenopus (Silurana) tropicalis]
gi|113197613|gb|AAI21200.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 177/386 (45%), Gaps = 42/386 (10%)
Query: 3 VARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNY 62
V R +S +R+I H+D+DCFY QVE + P+LR P + Q ++ YEAR +
Sbjct: 41 VGRSGTSASRVIVHIDMDCFYAQVEMIRNPELRNKPLGIQQKYI-----VVTCNYEARKF 95
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDE 121
GV + M +A+E CPQ+ LV DL+ YR +L + ER DE
Sbjct: 96 GVTKLMLIKDAREKCPQLVLV------SGEDLTPYREMSYRATELLEEFSPQVERLGFDE 149
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
Y+D+T+ + L EE G+ +D K V +W A R
Sbjct: 150 NYIDVTELVDKKL-----------QEERGNGRNPGVCGHVYSDQKMNVNDW-----AHVR 193
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
+A G I +E+R + T AG A NK+LAKL SG +KP QQT + S L
Sbjct: 194 ---IAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHESHSHL 250
Query: 242 LDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
++SL +K++ +G K L++ LG++ + DL L++ +G + + ++RG
Sbjct: 251 INSLDHVKRIPGIGYKTSKRLES-LGLSRISDLQACPITLLEKEFGSSVAHRIQMLSRGE 309
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V P+S SF + TV+ V+ + + L R+ D RI HT
Sbjct: 310 DDSAVVPSGPPQSISDEDSF---KKCSTVSEVKIKMEERLRNLLVRISKD----GRIPHT 362
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
L L F S+ ++ S+ CP+
Sbjct: 363 LRLTIRQFSPSNKWFNRE--SRQCPI 386
>gi|409078314|gb|EKM78677.1| hypothetical protein AGABI1DRAFT_121111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 674
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 187/435 (42%), Gaps = 89/435 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY E + R +P V+Q++ LIAV Y AR +G+ R +R
Sbjct: 70 RVVALCDSDAFYATCEMVRLGVDREIPLVVLQWD-----ALIAVNYPAREFGITRMIRLK 124
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARKGRCE 115
EA ++CP +++V V + K L YR E V I AR + +
Sbjct: 125 EALKLCPHLKVVHVATYKEGDAQPAYWDTVDTNTHKVSLDYYRR---ESVKIAAR-FKAK 180
Query: 116 RASIDEVYLDLTDAAEAML-------AETPPESLDEVD-----------EEALKSHILGL 157
RASIDE + D T + +L A P ++ +D E H++ L
Sbjct: 181 RASIDEAFFDYTKTVKGILLQRYPYLAHVPKDAEHGIDTPLPPPPQLKWAELGTGHVVPL 240
Query: 158 -----------ESKDGNDS-------------------KATVKEWLCRCDADHRDKLLAC 187
ESK +DS K T + + D L+
Sbjct: 241 HRPPSEEENEAESKTISDSGISNGDETENSGETSDTAAKGTEFDEKEQFTTTWHDVALSI 300
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
++ E R QV +E +T SAGIA NK LAKL + KP Q+ + ++ L LP
Sbjct: 301 AAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPSYLRPLPF 359
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K++ LGGKLG +L E V+T ++Q +G N W++ + RGI EV+
Sbjct: 360 RKIRFLGGKLGEALAKEYDVST----------EMQNKFGEN-AIWVYEVLRGIDRNEVKE 408
Query: 308 R-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHA 365
+ + KS + K+ P P +K + HW+ L EL+ RL E+N + TL LHA
Sbjct: 409 KGKVNKSMLASKNLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLWPKTLVLHA 466
Query: 366 SAFKSSDSDSRKKFP 380
+ FP
Sbjct: 467 RRAYDDGRSKQAPFP 481
>gi|355755039|gb|EHH58906.1| DNA polymerase iota [Macaca fascicularis]
Length = 738
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 201/454 (44%), Gaps = 55/454 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 47 NSSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 101
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 257
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 258 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQCIQKLSFG----ED 312
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 313 NSHVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 369
Query: 366 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 370 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 423
Query: 420 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 453
+ +T LSV + V + ++ Y+ P
Sbjct: 424 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 453
>gi|432872403|ref|XP_004072098.1| PREDICTED: DNA polymerase iota-like [Oryzias latipes]
Length = 680
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 177/386 (45%), Gaps = 43/386 (11%)
Query: 3 VARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNY 62
V P + R+I H DLDCFY QVE + P LR +P + Q ++ Y AR
Sbjct: 32 VNNPPGAPHRVILHFDLDCFYAQVEMIRDPSLREVPLGIQQKYI-----IVTCNYVARER 86
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDE 121
GV + M +AKE CP++ LV RG+ DL+ YR A +V +L+ ER DE
Sbjct: 87 GVTKLMSVTDAKEKCPELVLV-----RGE-DLTLYREASHQVTELLSSFCPLVERLGFDE 140
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
++D+T+ E + ETPP + + H+ N S A + +DH
Sbjct: 141 NFMDVTEMVERRMKETPPP-----EGYSFSGHVY-------NPSNAEI------SGSDH- 181
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
LA G I ELR V T AG+A NK+LAKL SG KP QQT + V +
Sbjct: 182 -PRLALGSYIAAELRDAVHSRLGLTGCAGVATNKLLAKLVSGTFKPNQQTVLLPEDVGHI 240
Query: 242 LDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
++SL ++K+ +G + L ++LGV +V DL L + +G L N++ G+
Sbjct: 241 MESLGGVRKVPGVGHQTAKKL-HQLGVVSVKDLQLLPLPDLVKEFGGAVARRLRNLSLGV 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V P+S SF + + + A V + QL L ER+ D Q + T
Sbjct: 300 DDSPVTPSGAPQSLSDEDSF---KKMSSEAEVVEKIQQLLSRLVERMQKDGRQPQTFRLT 356
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
+ + K +SR+ CP+
Sbjct: 357 IRRYTPTNKWFSRESRQ------CPI 376
>gi|383415497|gb|AFH30962.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 201/454 (44%), Gaps = 55/454 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 47 NSSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 101
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 257
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 258 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 312
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 313 NSHVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 369
Query: 366 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 370 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 423
Query: 420 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 453
+ +T LSV + V + ++ Y+ P
Sbjct: 424 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 453
>gi|260813031|ref|XP_002601223.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
gi|229286515|gb|EEN57235.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
Length = 397
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 165/367 (44%), Gaps = 50/367 (13%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R+I H+D+DCFY QVE + P LR P + Q ++ Y AR +GV + M
Sbjct: 14 SRVIVHIDVDCFYAQVEMIRDPSLRDKPLGIQQKYI-----VVTCNYVARKHGVTKLMGI 68
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+AKE+CP++ LV+ DL+ YR + L + ER DE ++D+T+
Sbjct: 69 KQAKELCPELVLVK------GEDLTHYREMSYRITVTLQKFSPLVERLGFDENFVDVTET 122
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+A L T L+ HI +G R K LACG
Sbjct: 123 VDARLKSTFSPQLN--------GHIFPEMEIEGTYE---------------RHKRLACGS 159
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI-K 248
I E+R + + TC AGIAHNK+LAKL +G +KP QQT++ V L+ +L +
Sbjct: 160 QIAAEMRQALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGVGKLMGTLKTAR 219
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
+ +G + LQ LG++TV DL D LQ +G T + + RG+ V
Sbjct: 220 NIPGIGSRTFKRLQT-LGISTVQDLQDAPADVLQAEFGSQTAQVMQQLCRGVDPSPVTPT 278
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQ---HWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P++ SF K AS+Q + L + L +RL D R H L +
Sbjct: 279 GPPQTISDEDSF------KKCASLQDAKERMTGLLQSLMKRLKGD----GRFPHVLRVTV 328
Query: 366 SAFKSSD 372
+S+
Sbjct: 329 RKLSASN 335
>gi|194214689|ref|XP_001499840.2| PREDICTED: DNA polymerase iota-like [Equus caballus]
Length = 864
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 166/358 (46%), Gaps = 39/358 (10%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+G P V Q + ++ YEAR GVK+
Sbjct: 153 SSSFRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKSL-----MVTCNYEARKLGVKKC 207
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 208 MNIRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 261
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +++ D H L
Sbjct: 262 TEMVEKRLQQL---QNDELLALTVSGHVYN-------------NQFVNLHDVLHIR--LL 303
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R V T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 304 VGSQIAAEMREAVYNRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLN 363
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+++V DL S L++ G + + ++ G V
Sbjct: 364 HIKEIPGIGYKTAKRLE-ALGISSVRDLQTCSSKILEKELGISVAQRIQKLSFGEDNSPV 422
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ P+S SF + + V++ + +L L R+C Q+ R HT+ L
Sbjct: 423 MSSGPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVC----QDGRKPHTIRL 473
>gi|384945076|gb|AFI36143.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 201/454 (44%), Gaps = 55/454 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 47 NSSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 101
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 257
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 258 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 312
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 313 NSHVIPS--GPPQSFCEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 369
Query: 366 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 370 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 423
Query: 420 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 453
+ +T LSV + V + ++ Y+ P
Sbjct: 424 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 453
>gi|5739300|gb|AAD50424.1|AF151691_1 DNA polymerase iota [Mus musculus]
Length = 717
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 25 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKY-----LVVTCNYEARKLGVRKLM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 80 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 133
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 134 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 175
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 176 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 235
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 236 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 294
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 295 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVIR 347
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 348 RY----SDKHCNRESRQCPI 363
>gi|7533183|gb|AAF63383.1|AF245438_1 DNA polymerase iota [Homo sapiens]
Length = 715
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 174/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ N S + R
Sbjct: 131 DLTEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR--------- 172
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 292 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|5739208|gb|AAD50381.1|AF140501_1 DNA polymerase iota [Homo sapiens]
gi|20160209|gb|AAM11872.1| polymerase (DNA directed) iota [Homo sapiens]
Length = 715
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 174/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ N S + R
Sbjct: 131 DLTEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR--------- 172
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 292 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|12052864|emb|CAB66605.1| hypothetical protein [Homo sapiens]
gi|117644780|emb|CAL37856.1| hypothetical protein [synthetic construct]
gi|208965366|dbj|BAG72697.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 174/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ N S + R
Sbjct: 131 DLTEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR--------- 172
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 292 PVILSGPPQSFSEEDSF---KKCTSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|429859010|gb|ELA33810.1| sister chromatid cohesion protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 567
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 148/540 (27%), Positives = 223/540 (41%), Gaps = 105/540 (19%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S R++A VD D FY Q E + P AV Q+N +IA+ Y A+ GVKR M
Sbjct: 34 SPLRVVALVDYDSFYAQYETLRLGLPPSKPLAVRQWN-----AIIALNYAAKERGVKRIM 88
Query: 69 RGDEAKEVCPQIELVQVPVAR------------------GKADLSSYRNAGSEVVSILAR 110
DEA+ +CP I L VP R KA L YR + + ++ +
Sbjct: 89 SADEARRICPDIVLQHVPTWREGDDRWRYRDDVLDHLKTDKASLDPYRGVSRKTMHLVRK 148
Query: 111 ------KGRCERASIDEVYLDLTDAAEAMLAETPP------ESLDEVDEEALKSHILGLE 158
ERA +DE YLDL+ L E P +SLD + L L
Sbjct: 149 LLPAKPAPTIERAGVDEFYLDLSAQVHRTLVERFPTLTPTNKSLD---------NYLPLP 199
Query: 159 SKDGNDSKATVKEWLCRCDADHRDKLL-------------------ACGVLIVTELRMQV 199
+ D T +W +DK++ + G IV +R ++
Sbjct: 200 AAD------TALQW-------SKDKIMIPADLQDPDDVLDWDDVVLSIGGSIVRHIREEI 246
Query: 200 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 259
K+ + T SAGI+ NKMLAK AS MNKPA QT + S+ ++ +L + LG +LG
Sbjct: 247 KKQLQLTTSAGISCNKMLAKAASRMNKPAGQTILRRKSIPIIMPTLKATSLSGLGRQLGQ 306
Query: 260 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 319
+ G + DLL+ S +++ G G W++N RG V+ R +S + K+
Sbjct: 307 KVVKTFGSDNIRDLLQVSLTEMRLQLGAEDGQWVYNAIRGDEKGPVRPRSEVQSLLAAKT 366
Query: 320 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK---RIAHTLTLHASAFKSSDSDSR 376
F P+A + + WL +L RL DL+ + R T+ +H +R
Sbjct: 367 F-IPKA-ENLQQADKWLRIFAADLESRL-HDLDLDSEVPRRPRTIAVH-HHINGRFGPTR 422
Query: 377 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 436
SK P+ +E F + LR+ H W +SVS S +
Sbjct: 423 ----SKQAPISPQIEINKESIFTMLHDLLRDL---------TEHGESWPCLGVSVSMSNL 469
Query: 437 VPVLSG--TCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSP------SGSESYSTLNSTE 488
L T I +F D S ++ + + AP SP + S++Y + ++TE
Sbjct: 470 DSGLPAPQTGRITSFF-ATDNSRSPRKRGREEDVCDAPGSPAKRQTVASSDAYKSPDATE 528
>gi|21619716|gb|AAH32662.1| Polymerase (DNA directed) iota [Homo sapiens]
gi|123979980|gb|ABM81819.1| polymerase (DNA directed) iota [synthetic construct]
gi|124000603|gb|ABM87810.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 174/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ N S + R
Sbjct: 131 DLTEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR--------- 172
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 292 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|350640297|gb|AEQ34094.1| DNA polymerase iota [Mus musculus]
gi|350640305|gb|AEQ34098.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 45 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 99
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 100 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 153
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 154 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 195
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 196 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 255
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 256 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 314
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 315 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVIR 367
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 368 RY----SDKHCNRESRQCPI 383
>gi|70955242|gb|AAZ16247.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 176/386 (45%), Gaps = 42/386 (10%)
Query: 3 VARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNY 62
V R +S +R+I H+D+DCFY QVE + P+LR P + Q ++ YEAR +
Sbjct: 41 VGRSGTSASRVIVHIDMDCFYAQVEMIRNPELRNKPLGIQQKYI-----VVTCNYEARKF 95
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDE 121
GV + M +A+E CPQ+ LV DL+ YR +L + ER DE
Sbjct: 96 GVTKLMLIKDAREKCPQLVLV------SGEDLTPYREMSYRATELLEEFSPQVERLGFDE 149
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
Y+D+T+ + L EE G+ +D K V W A R
Sbjct: 150 NYIDVTELVDKKL-----------QEERGNGRNPGVCGHVYSDQKMNVNNW-----AHVR 193
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
+A G I +E+R + T AG A NK+LAKL SG +KP QQT + S L
Sbjct: 194 ---IAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHESHSHL 250
Query: 242 LDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
++SL +K++ +G K L++ LG++ + DL L++ +G + + ++RG
Sbjct: 251 INSLDHVKQIPGIGYKTSKRLES-LGLSRISDLQACPITLLEKEFGSSVAHRIQMLSRGE 309
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V P+S SF + TV+ V+ + + L R+ D RI HT
Sbjct: 310 DDSAVVPSGPPQSISDEDSF---KKCSTVSEVKIKMEERLRNLLVRISKD----GRIPHT 362
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
L L F S+ ++ S+ CP+
Sbjct: 363 LRLTIRQFSPSNKWFNRE--SRQCPI 386
>gi|402903152|ref|XP_003914442.1| PREDICTED: DNA polymerase iota [Papio anubis]
Length = 737
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 201/454 (44%), Gaps = 55/454 (12%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 46 NSSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 100
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 154
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 155 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 196
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 197 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 256
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 257 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 311
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 312 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 368
Query: 366 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 419
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 369 RRYTSEKHCGRE---SRQCPIPSHVIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 422
Query: 420 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 453
+ +T LSV + V + ++ Y+ P
Sbjct: 423 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 452
>gi|226958460|ref|NP_036102.2| DNA polymerase iota isoform 2 [Mus musculus]
gi|350640293|gb|AEQ34092.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 45 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 99
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 100 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 153
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 154 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 195
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 196 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 255
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 256 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 314
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 315 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVIR 367
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 368 RY----SDKHCNRESRQCPI 383
>gi|59798311|sp|Q6R3M4.1|POLI_MOUSE RecName: Full=DNA polymerase iota; AltName: Full=Rad30 homolog B
gi|45738074|gb|AAS75834.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 25 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 80 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 133
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 134 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 175
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 176 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 235
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 236 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 294
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 295 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVIR 347
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 348 RY----SDKHCNRESRQCPI 363
>gi|350640291|gb|AEQ34091.1| DNA polymerase iota [Mus musculus]
gi|350640303|gb|AEQ34097.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 170/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 45 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 99
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 100 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 153
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 154 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 195
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 196 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 255
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 256 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 314
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 315 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVIR 367
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 368 RY----SDKHCNRESRQCPI 383
>gi|441602786|ref|XP_003267571.2| PREDICTED: DNA polymerase iota isoform 1 [Nomascus leucogenys]
Length = 715
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 177/381 (46%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I H+DLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 24 NSSSRVIVHMDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 78
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 133 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 174
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMHNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSPKILEKELGISVARRIQELSFG----ED 289
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 290 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 346
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|405120879|gb|AFR95649.1| eta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 704
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 168/387 (43%), Gaps = 69/387 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R IAH D+D Y Q EQ + +P Q+ +IAV Y AR YG+KR +
Sbjct: 35 RTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQS-----IIAVNYPARKYGIKRFTSIE 89
Query: 72 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK---G 112
+AK++CPQ+ + V R K L YR ++++I K G
Sbjct: 90 DAKKMCPQLRIQHVATYRNGESEAGYWDDVNPRTHKVSLDVYRRESLKILAIFKEKIPRG 149
Query: 113 RCERASIDEVYLDLTD-------AAEAMLAETP---PESLDEV----------------- 145
E+ASIDE +LDLT AA L++ P P LD
Sbjct: 150 EIEKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGSVFP 209
Query: 146 ----DEEALKSHILGLESKDGNDSKATVKEWLCRCDADH-RDKLLACGVLIVTELRMQVL 200
++ + H G + +G++ R + D D L G +++ +R +V
Sbjct: 210 IDGKEDGSGMGHEEGRQEDEGSEDGDESDGRTSRSNRDSWEDWALCMGGELMSNVREEVY 269
Query: 201 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 260
+TC+A L S KP QT + ++V L+ ++ LGGKLG +
Sbjct: 270 LRLHYTCTA----------LCSAWKKPNNQTILRTAAVPAFLNDRDFTDIRSLGGKLGAA 319
Query: 261 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
+ E G TVGD+L S D++Q+ +G W++NI RGI EV R+ KS + KS
Sbjct: 320 IAQEFGAKTVGDMLTVSLDEMQKKFG-EESIWVYNILRGIDHSEVTERVTTKSMLASKSI 378
Query: 321 PGPRALKTVASVQHWLNQLCEELSERL 347
A+ + WL+ L EL+ RL
Sbjct: 379 RP--AVTSPQQGHQWLSILAGELNVRL 403
>gi|350640295|gb|AEQ34093.1| DNA polymerase iota [Mus musculus]
gi|350640301|gb|AEQ34096.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 169/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 45 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 99
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 100 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 153
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 154 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 195
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 196 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 255
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 256 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 314
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 315 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCKD----GRKPHTVRLVIR 367
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 368 RY----SDKHCNRESRQCPI 383
>gi|119583404|gb|EAW63000.1| polymerase (DNA directed) iota, isoform CRA_a [Homo sapiens]
Length = 739
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 175/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 47 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 100
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 101 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 154
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ +S + D H
Sbjct: 155 DLTEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR-- 196
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 197 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 256
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 257 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 315
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 316 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 368
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 369 IIRRYSSEKHYGRE---SRQCPI 388
>gi|45738076|gb|AAS75835.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 169/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 25 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 80 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 133
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 134 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 175
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 176 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 235
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 236 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 294
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 295 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCKD----GRKPHTVRLVIR 347
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 348 RY----SDKHCNRESRQCPI 363
>gi|154350220|ref|NP_009126.2| DNA polymerase iota [Homo sapiens]
gi|327478565|sp|Q9UNA4.3|POLI_HUMAN RecName: Full=DNA polymerase iota; AltName: Full=Eta2; AltName:
Full=RAD30 homolog B
Length = 740
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 175/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 48 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 101
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 102 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 155
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ +S + D H
Sbjct: 156 DLTEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR-- 197
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 198 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 257
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 258 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 316
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 317 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 369
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 370 IIRRYSSEKHYGRE---SRQCPI 389
>gi|74208215|dbj|BAE26322.1| unnamed protein product [Mus musculus]
Length = 717
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 169/380 (44%), Gaps = 43/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 25 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 80 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 133
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 134 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 175
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 176 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 235
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 236 IKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVT 294
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 295 PSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCKD----GRKPHTVRLVIR 347
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ SD S+ CP+
Sbjct: 348 RY----SDKHCNRESRQCPI 363
>gi|426199305|gb|EKV49230.1| hypothetical protein AGABI2DRAFT_184029 [Agaricus bisporus var.
bisporus H97]
Length = 672
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 186/442 (42%), Gaps = 95/442 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY E + R +P V+Q++ LIAV Y AR +G+ R +R
Sbjct: 60 RVVALCDSDAFYATCEMVRLGVDREIPLVVLQWD-----ALIAVNYPAREFGITRMIRLK 114
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR----- 110
EA ++CP +++V V + K L YR E V I AR
Sbjct: 115 EALKLCPHLKVVHVATYKEGDAQPAYWDTVDTNTHKVSLDYYRR---ESVKIAARFKASL 171
Query: 111 --KGRCERASIDEVYLDLTDAAEAML-------AETPPESLDEVD-----------EEAL 150
ERASIDE + D T + +L A P ++ +D E
Sbjct: 172 PTSVEIERASIDEAFFDYTKTVKEILLQRYPYLAHVPKDAEHGIDTPLPPPPQLKWAELG 231
Query: 151 KSHILGL-----------ESKDGNDS-------------------KATVKEWLCRCDADH 180
H++ L ESK +DS K T + +
Sbjct: 232 TGHVVSLHRPPSEEENEAESKTISDSGISNDGETENSGETSDTVAKGTEFDEKEQFTTTW 291
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
D L+ ++ E R QV +E +T SAGIA NK LAKL + KP Q+ + ++
Sbjct: 292 HDVALSIAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPS 350
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L LP +K++ LGGKLG +L E V+T ++Q +G N W++ + RGI
Sbjct: 351 YLRPLPFRKIRFLGGKLGEALAKEYDVST----------EMQNKFGEN-AIWVYEVLRGI 399
Query: 301 SGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-A 358
EV+ + + KS + K+ P P +K + HW+ L EL+ RL E+N +
Sbjct: 400 DRNEVKEKGKVNKSMLASKNLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLWP 457
Query: 359 HTLTLHASAFKSSDSDSRKKFP 380
TL LHA + FP
Sbjct: 458 KTLVLHARRAYDDGRSKQAPFP 479
>gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis
mellifera]
Length = 564
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 175/380 (46%), Gaps = 40/380 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY QVE + P+L P V Q N ++ Y AR YG+K+ M
Sbjct: 14 RTIIHIDVDCFYAQVEMLRHPELENKPLGVQQKNM-----VVTSNYIAREYGIKKCMSVQ 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA +CP + LV DL++YR+ ++++ IL + ER D+ ++D+T
Sbjct: 69 EALRLCPGLALV------NGEDLTNYRHFSTKILEILHQFTPLVERLGFDDNFMDVTSIV 122
Query: 131 EAMLAETPPESLD---EVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + L+ +++E I G A+ +E C C A L
Sbjct: 123 QKYMNSGNNSELNINISMEDENPVGEIFG----------ASEEECPCGCHAR-----LII 167
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QQT + S LL ++
Sbjct: 168 ASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLSNIGS 227
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ K+ +G K T L + T+ DL K S + L+ G + L + A GI V+
Sbjct: 228 VSKIPGVGQK-TTQLLMSNNIKTIDDLRKTSLETLEMKIGIDLARKLKDNAEGIDETVVK 286
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+S G F +++ VA V+ L L L+E D +A LT+
Sbjct: 287 PTGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPVAMRLTVRKH 341
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
F S S R+ ++ C L
Sbjct: 342 DFNKSSSGKRE---TRQCAL 358
>gi|410923585|ref|XP_003975262.1| PREDICTED: DNA polymerase iota-like [Takifugu rubripes]
Length = 710
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 178/382 (46%), Gaps = 49/382 (12%)
Query: 2 PVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARN 61
P P S R+I H DLDCFY QVE + P LR +P + Q ++ Y AR
Sbjct: 40 PTVAPTS---RVILHFDLDCFYAQVEMIRNPALREVPLGIQQKY-----IVVTCNYVARQ 91
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERAS 118
GV + M AKE CPQ+ LV +G+ DL+ YR +V +L C ER
Sbjct: 92 MGVTKLMSVVNAKEKCPQLVLV-----KGE-DLTHYREMSYKVTDLLM--SYCPLVERLG 143
Query: 119 IDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDA 178
DE ++D+T E LAET + D + K H+ G S A VK +
Sbjct: 144 FDENFMDITGMIEKRLAET-----SDCDF-SFKGHVYGHVS-------AGVKA------S 184
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV---PF 235
DH LA G I ELR + + T AGIA NK+LAKL SG KP QQT++
Sbjct: 185 DH--PRLALGSHIAAELREAIQCKLGLTGCAGIATNKLLAKLVSGTFKPNQQTSLLPENI 242
Query: 236 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 295
+ G L+SL +K+ +G + LQ LG+ TV DL F + L + +G T L +
Sbjct: 243 GDIVGCLNSL--RKVPGVGHQTAKKLQ-ALGLATVKDLQHFPVNNLVKEFGGPTAQRLKS 299
Query: 296 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 355
+ G+ V P+S SF + + ++ V + +L L +R+ D Q +
Sbjct: 300 LVLGVDDSPVTPTGAPQSLSDEDSF---KKMSSMKEVLEKIQELLRSLVDRMQKDGRQPQ 356
Query: 356 RIAHTLTLHASAFKSSDSDSRK 377
+ T+ + + K + +SR+
Sbjct: 357 TLRLTIRRYTATNKWFNRESRQ 378
>gi|397513971|ref|XP_003827278.1| PREDICTED: DNA polymerase iota [Pan paniscus]
Length = 739
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 182/388 (46%), Gaps = 45/388 (11%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
+P+ P+SS +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR
Sbjct: 44 LPI--PNSS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEAR 95
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASI 119
GVK+ M +AKE CPQ+ LV DL+ YR +V +L ER
Sbjct: 96 KLGVKKLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGF 149
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE ++DLT+ L + DE+ + H+ +S + D
Sbjct: 150 DENFVDLTEMVGKRLQQL---QSDELSVVTVSGHVYNNQS-------------INLLDVL 193
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
H L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S +
Sbjct: 194 HIR--LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQ 251
Query: 240 GLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L+ SL IK++ +G K L+ LG+ +V DL FS L++ G + + ++
Sbjct: 252 HLIHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSF 310
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G E + ++P G +SF + K +S N++ EEL L + + Q+ R
Sbjct: 311 G----EDNSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKP 363
Query: 359 HTLTLHASAFKSSDSDSRKKFPSKSCPL 386
HT+ L + S R+ S+ CP+
Sbjct: 364 HTVRLIIRRYSSEKHYGRE---SRQCPI 388
>gi|343960024|dbj|BAK63866.1| DNA polymerase iota [Pan troglodytes]
Length = 715
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 178/383 (46%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P+SS +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNSS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ L + DE+ + H+ N S + R
Sbjct: 131 DLTEMVGKRLQQL---QSDELSVVTVSGHVYN------NQSINLLDVLHIR--------- 172
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG---- 287
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
E + ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 288 EDNSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|114673193|ref|XP_001156755.1| PREDICTED: DNA polymerase iota isoform 3 [Pan troglodytes]
Length = 739
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 179/383 (46%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P+SS +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 47 PNSS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 100
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 101 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 154
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ L + DE+ + H+ +S + D H
Sbjct: 155 DLTEMVGKRLQQL---QSDELSVVTVSGHVYNNQS-------------INLLDVLHIR-- 196
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 197 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 256
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 257 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG---- 311
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
E + ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 312 EDNSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRL 368
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 369 IIRRYSSEKHYGRE---SRQCPI 388
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 165/359 (45%), Gaps = 68/359 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P+L+G P AV NE K G + A YEAR +GV+ +M G
Sbjct: 8 RKIIHVDMDAFYASVEQMDNPELKGKPLAVGG-NE-KRGVVSAASYEARKFGVRSAMSGY 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDAA 130
+AK+ CP++ V+ R Y+ +++ +I L E S+DE YLD+T
Sbjct: 66 QAKKNCPELIFVRPRFDR-------YKEISTKIRTIFLEYTDLVEPLSLDEAYLDVT--- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+K GN S +
Sbjct: 116 ---------------------------ENKKGNPSASN---------------------- 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ +E T SAGI+ NK +AK+AS NKP Q TV V L+ L I+K
Sbjct: 127 IAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFLEDLEIRKF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ T LG+ T DL + S + L E++G +G + +N+ RGI EV+ +
Sbjct: 187 YGV-GKVTTQKMYSLGIFTGKDLKEKSVEFLTENFG-KSGAFYYNVVRGIHLSEVKPNRI 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PKS G+ ++F L + + L + EL RL K I TL + S FK
Sbjct: 245 PKSVGAERTF--SENLSSEVFMLERLESIANELERRLKKSKIAGKTI--TLKIKYSDFK 299
>gi|348535636|ref|XP_003455305.1| PREDICTED: DNA polymerase iota-like [Oreochromis niloticus]
Length = 716
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 169/379 (44%), Gaps = 47/379 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H DLDCFY QVE + P LR +P + Q ++ Y AR GV + M
Sbjct: 44 RVILHFDLDCFYAQVEMIRNPALREVPLGIQQKYI-----IVTCNYVARERGVNKLMSVT 98
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAA 130
+AKE CP++ LV+ DL+ YR ++ +L ER DE ++D+T+
Sbjct: 99 DAKEKCPELVLVK------GEDLTHYREMSYKMTELLMSYCPLVERLGFDENFMDVTEMV 152
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E LA+T + ++ + K H+ S D S LA G
Sbjct: 153 EQRLAQT-----VKSEDFSFKGHVYNHPSADVKASNY---------------PRLALGSH 192
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV---PFSSVKGLLDSLPI 247
I ELR V + T AGIA NK+LAKL SG KP QQTT+ S + G L S +
Sbjct: 193 IAGELREAVHSKLGLTGCAGIATNKLLAKLVSGTFKPNQQTTLLPENISDIMGCLGS--V 250
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K+ +G + LQ LG+ +V DL + L + +G T L N+A G+ V
Sbjct: 251 RKVPGVGHQTAKRLQ-ALGLVSVKDLQLCPLNDLVKEFGSPTAQRLKNLALGVDDSPVTC 309
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
P+S SF + + + V QL L ER+ D Q + T+ + +
Sbjct: 310 TGAPQSLSDEDSF---KKMSSTKEVSEKTQQLLSSLVERMHKDGRQPQTFRLTIRKYTTT 366
Query: 368 FKSSDSDSRKKFPSKSCPL 386
K +SR+ CP+
Sbjct: 367 NKWFSRESRQ------CPI 379
>gi|258570849|ref|XP_002544228.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904498|gb|EEP78899.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 588
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 196/470 (41%), Gaps = 79/470 (16%)
Query: 35 RGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP-------- 86
R P AV Q++ LIAV Y AR + + R + EA+ CPQ+ +V V
Sbjct: 8 RTQPLAVQQWD-----SLIAVNYAARPFNISRMITAKEARARCPQLMMVHVATFREGEGG 62
Query: 87 -----------VARGKADLSSYRNAGSEVVSILARKG----------------------- 112
VA K L YR E++ + R G
Sbjct: 63 KWAYRPEGDHDVATDKVSLDPYRAESREILRTM-RDGLMAWAERVEPCGFGEGGGGRERD 121
Query: 113 -----RCERASIDEVYLDLTDAAEAMLAETPP-----ESLDEVDEEALKSHILGLESKDG 162
+ E+A IDEV++DL+ A L E P E E+ E + L+ +
Sbjct: 122 RSLMFKLEKAGIDEVFVDLSALVWATLLERYPMLREMEVKKEMGERLPRPPTTALQWEKE 181
Query: 163 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
++ + D D D ++ G I+ +R+ V + ++TCS GIA NKM+AKL S
Sbjct: 182 DELVDLDEGETEEDDPDWDDVVMLIGAEIIRSVRLLVWERLKYTCSGGIARNKMMAKLGS 241
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 282
NKP +QT V +V+ L K++ LGGKLG + + VG+L + ++L+
Sbjct: 242 ACNKPNKQTIVRHRAVQQFLGDFKFTKIRNLGGKLGKHISSTFETEQVGELQQVPLEQLK 301
Query: 283 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 342
+TG WL + RG EV R KS S K+F ++ + + WL E
Sbjct: 302 AKLDDDTGMWLHELIRGNDYSEVTPRTQIKSMSSTKAFRP--SITSSEQAEKWLRIFVAE 359
Query: 343 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 401
+ RL + + ++KR LT+H ++ S+ P+ G A +E F L
Sbjct: 360 IYGRLVEEGVLEHKRRPKVLTIHRYTGQTK---------SRQIPIPSGMALGEEPLFALA 410
Query: 402 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 451
+ L++ + + W LS++ S ++G S+ +F
Sbjct: 411 KQLLKQIVNDGQM---------WPCINLSLTVSGFEDGVAGNQSLDGFFT 451
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 152/358 (42%), Gaps = 70/358 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P LRGLP AV G L YEAR +GV +M
Sbjct: 3 RKIIHIDMDAFYASVEQRDNPALRGLPIAV--GGSGARGVLTTASYEARKFGVHSAMPSV 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAA 130
A CP + V K L YR+ ++ I E S+DE YLD+T+
Sbjct: 61 TAARKCPSLIFV-------KPRLEVYRDVSQQIREIFCDYTPLVEPLSLDEAYLDVTENL 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ M E+ E
Sbjct: 114 KGM----------EIATE------------------------------------------ 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +E+R ++L T T SAGI++NK LAK+AS +NKP Q +P + + LP+KK
Sbjct: 122 IASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGPSFIQRLPVKKF 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + ++LG+ T DL + S + L + +G G + + IARGI +VQ
Sbjct: 182 HGVGPATAEKM-HQLGIETGADLKQRSFEFLSQHFG-KAGAYFYGIARGIDNRDVQPDRK 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
KS G+ +FP + V ++ QL L ++C N A T+TL F
Sbjct: 240 RKSIGAEDTFP-----EDVFELETAREQL-HPLVSKVCQFCSNNDTGAKTVTLKVKYF 291
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 176/411 (42%), Gaps = 73/411 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQ P L+G AV E G + A YEAR YGV+ +M G
Sbjct: 3 RKIIHIDMDAFFASVEQHDDPWLKGKAIAVG--GEGARGVVAAASYEARRYGVRSAMAGT 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A+++CPQ+ V K YR ++ +I + + TD E
Sbjct: 61 TARQLCPQLIFV-------KPRFERYREISMQIRTI---------------FYEYTDLVE 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D + LI
Sbjct: 99 -------PLSLDE-----------------------------AYLDVTTNKMDMPSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP V L L IKK
Sbjct: 123 AQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEEVLDFLAQLDIKKFY 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ + G+ T DL + ++LQE +G N G + + IARGI VQ L
Sbjct: 183 GI-GKVTAQKMYQKGIFTGADLRAKTLEELQEYFG-NNGEYFYQIARGIHLSPVQPFRLV 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK-S 370
KS G +F + + ++ L +LCEE+++RL K + TL L S FK
Sbjct: 241 KSIGVEHTFET--NISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTV--TLKLKYSDFKQQ 296
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 421
+ S + F S + +++ L+Q LRE + GV +Y
Sbjct: 297 TRSRTLIDFVGDSATIYQVISEL------LYQERLRESVRLLGVSLSHFNY 341
>gi|119583405|gb|EAW63001.1| polymerase (DNA directed) iota, isoform CRA_b [Homo sapiens]
Length = 429
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 176/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 47 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVK 100
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 101 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 154
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ +S + D H L
Sbjct: 155 DLTEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLL 198
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 199 V--GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 256
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 257 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 315
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 316 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 368
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 369 IIRRYSSEKHYGRE---SRQCPI 388
>gi|62955641|ref|NP_001017834.1| DNA polymerase iota [Danio rerio]
gi|62202162|gb|AAH92781.1| Zgc:110185 [Danio rerio]
gi|182890874|gb|AAI65649.1| Zgc:110185 protein [Danio rerio]
Length = 710
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 169/380 (44%), Gaps = 45/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ R+I H DLDCFY QVE + P LR P + Q ++ Y AR GV + M
Sbjct: 34 TSQRVILHFDLDCFYAQVEMIRNPALRTKPLGIQQ-----KYIIVTSNYVARELGVNKLM 88
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLT 127
+A E CPQ+ LV +G+ DL+ YR +V +L ER DE ++D+T
Sbjct: 89 SVTDAVEKCPQLVLV-----KGE-DLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVT 142
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E + ET + + + H+ ES D + LA
Sbjct: 143 EMVEKRIKET------RISDLSFNGHVYNHES----------------VVVDEENIRLAV 180
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP- 246
G +I E+R + T AG+A NK+LAKL SG KP QQTT+ S L+ SL
Sbjct: 181 GSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSNAELMSSLTG 240
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ K+ +G K L+ LG+ V DL + L + +G + N+A GI V
Sbjct: 241 LIKVPGIGYKTREKLK-ALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNLACGIDDSPVT 299
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S SF + + T+ V + +L L+ER+ D R HTL L
Sbjct: 300 PAGPPQSLSDEDSF---KKMSTLEEVLKKIEELLINLTERMHKD----GRQPHTLRLTIR 352
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ ++ ++ S+ CP+
Sbjct: 353 KYTVTNRWFNRE--SRQCPI 370
>gi|320163305|gb|EFW40204.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 185/395 (46%), Gaps = 51/395 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A +D+D F++Q E ++P LRG P A+ Q+ + +IA+ YEAR G+ + +
Sbjct: 8 RVVACIDVDAFFIQAEILRRPWLRGKPIALQQHQD-----IIALSYEARALGIAKHTKPG 62
Query: 72 EAKEVCPQIELVQVPV-ARGKADLSSYR--------NAGSEVVSILARKGRCERASIDEV 122
+ P++ +V VP+ GKA YR S ++ + E ASIDE
Sbjct: 63 VVRATHPEVTIVHVPLRGLGKATYRDYRLLSICVFDVVRSFATAVPSAPVTVEVASIDEG 122
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES-KDGNDSKATVKEWLCRCDADHR 181
YLDLT A+ ++ +T + +EA +L + DG V +
Sbjct: 123 YLDLTARAKHLMVQT-------IAQEASNERLLHRQRYDDGEQVHGGV------LPSGGP 169
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
LL G +++ ELR +L CSAGIAHNK+LAKLA+ + KP Q V S+ L
Sbjct: 170 SNLLEAGAVLIAELRAAILSVLSLECSAGIAHNKLLAKLATRLAKPNGQVVVVNSNPLLL 229
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT--WLWNIARG 299
L + GGK+ +L+ +G+ T GD+L+ L +G ++ T L RG
Sbjct: 230 LQE---AGIPSFGGKVTDTLKT-VGIETGGDVLRAPPSFLASLFGASSPTPASLLRACRG 285
Query: 300 ISGEEVQARLLPKSHGSGKSFP---------GPRA----LKTVASVQHWLNQLCEELSER 346
EV R L KS S + GP A + + ++ +L E+L+ER
Sbjct: 286 EDDSEVVDRGLIKSISSQMALTAWARPRFGGGPTATIEPVGVSEDISLFIRELAEDLAER 345
Query: 347 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK-FP 380
D + R TLT+ A++ D+ SR + FP
Sbjct: 346 TLEDQIVHSRHPSTLTV---AYRVDDTWSRSRTFP 377
>gi|110591264|pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|110591267|pdb|2DPJ|A Chain A, Structure Of Hpoli With Dna And Dttp
gi|119389500|pdb|2FLN|A Chain A, Binary Complex Of Catalytic Core Of Human Dna Polymerase
Iota With Dna (Template A)
gi|119389503|pdb|2FLP|A Chain A, Binary Complex Of The Catalytic Core Of Human Dna
Polymerase Iota With Dna (Template G)
gi|122920195|pdb|2FLL|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Dna And
Dttp
gi|218681853|pdb|3EPG|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine
gi|218681856|pdb|3EPI|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine And Incoming Ttp
gi|237640547|pdb|3G6V|A Chain A, Dna Synthesis Across An Abasic Lesion By Human Dna
Polymerase-Iota
gi|237640550|pdb|3G6X|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dgtp With An
Abasic Site At The Templating Position
gi|237640553|pdb|3G6Y|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dttp With An
Abasic Site At The Templating Position
gi|238828276|pdb|3GV7|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dttp
gi|238828279|pdb|3GV8|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dgtp
gi|309319996|pdb|3NGD|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|309320677|pdb|3OSN|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|323714640|pdb|3Q8P|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite
8-Oxo-Guanine
gi|323714643|pdb|3Q8Q|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite
8-Oxo-Guanine
gi|323714646|pdb|3Q8R|B Chain B, Human Dna Polymerase Iota Incorporating Dgtp Opposite
8-Oxo-Guanine
gi|323714649|pdb|3Q8S|B Chain B, Human Dna Polymerase Iota Incorporating Dttp Opposite
8-Oxo-Guanine
gi|390981111|pdb|4EBC|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981114|pdb|4EBD|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981117|pdb|4EBE|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|402550536|pdb|4FS1|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dttp By
Human Polymerase Iota
gi|402550539|pdb|4FS2|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dctp By
Human Polymerase Iota
gi|440690932|pdb|4EYH|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
gi|440690936|pdb|4EYI|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
Length = 420
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 176/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNAS-SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYL 124
+ M +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLMNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ +S + D H L
Sbjct: 131 DLTEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLL 174
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 175 V--GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 292 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|296222687|ref|XP_002757293.1| PREDICTED: DNA polymerase iota isoform 1 [Callithrix jacchus]
Length = 738
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 169/381 (44%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 47 NSSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 101
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRVAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + + L V + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQLQSDELSAV---TVLGHVYNNQSINLHDILHI---------------RLL 197
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKLASG+ KP QQT + S + L+ SL
Sbjct: 198 VGSQIAAEMREAMYNRLGLTGCAGVASNKLLAKLASGVFKPNQQTVLLPESCQHLIHSLN 257
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 258 HIKEIPGIGCKTTKCLE-ALGINSVHDLQTFSSKILEKELGISVAQRILKLSFGEDNSPV 316
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + + + +L L R+C D R HT+ L
Sbjct: 317 IPSGPPQSFSEEDSF---KKCSSEVEAKKRIEELLASLLNRVCRD----GRKPHTVRLII 369
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ C +
Sbjct: 370 RRYSSGKHHGRE---SRQCSI 387
>gi|449438635|ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1155
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 169/422 (40%), Gaps = 76/422 (18%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I HVD+DCF+V V R PK + P AV + KG I+ Y AR+YGVK M +
Sbjct: 432 IIHVDMDCFFVSVVIRNIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRD 491
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA---SIDEVYLDLTDA 129
AK +CP LV P D SY + IL + CE+ S DE +LD++
Sbjct: 492 AKALCPH--LVIFPY-----DFKSYEGVADQFYDILHK--HCEKVQAVSCDEAFLDISGT 542
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ VD E L S I
Sbjct: 543 -------------NNVDPEVLASKI----------------------------------- 554
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
R ++ T T SAGIA N ++A+LA+ KP Q +P V L+ LPIK
Sbjct: 555 ------RKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKD 608
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G L L+ V T L S+D LQ+ +G TG LWN +RG+ V L
Sbjct: 609 LPGIGHALEEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVG--L 665
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
+ +S G K Q +L LC+E+S RL Q + T TL +
Sbjct: 666 IQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGR----TFTLKIKKRR 721
Query: 370 SSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 427
+ + K C L + T + D + Q +++ G F + + G +++
Sbjct: 722 KNADEPTKYMGCGDCENLSHSLTVPVATDDLEILQRIVKQLFGFFVIDVKEIRGIGLQVS 781
Query: 428 AL 429
L
Sbjct: 782 KL 783
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 175/374 (46%), Gaps = 73/374 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQ P+LRG+P AV K G + A YEAR YGVK +M
Sbjct: 8 RKIIHIDMDAFFASVEQLDNPELRGIPVAVG--GSEKRGVVAAASYEARKYGVKSAMSSY 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK+ CP++ V+ R K ++S SI +++ D TD E
Sbjct: 66 IAKKKCPELIFVKPRFDRYK-EISE---------------------SIQKIFYDYTDLVE 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE +++ +K GN S + I
Sbjct: 104 -------PLSLDE-------AYLDVTYNKKGNPSASE----------------------I 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ T T SAGI+ NK +AK+AS NKP Q TV V+ L++L I+K
Sbjct: 128 AKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKPKEVESFLEALDIRKFY 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ T LG+ T DL S + L+ +G N+G+ + I RG V+ +P
Sbjct: 188 GI-GKVTTEKMYLLGIFTGKDLKTKSREFLEYHFG-NSGSHYYQIVRGFHNSPVKPERIP 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS G+ +F L+ ++S + +L + + +S+ L + L++NK T+TL K
Sbjct: 246 KSVGAEHTF-----LENLSS-EVFLKERLDNISQELETRLKKNKLAGKTITL-----KIK 294
Query: 372 DSDSRKKFPSKSCP 385
SD + SK+ P
Sbjct: 295 YSDFTLQTRSKTLP 308
>gi|403268064|ref|XP_003926107.1| PREDICTED: DNA polymerase iota isoform 1 [Saimiri boliviensis
boliviensis]
Length = 715
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 169/381 (44%), Gaps = 42/381 (11%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 24 NSSSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 78
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRAAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 133 TEMVEKRLRQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 174
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 235 HIKEIPGIGYKTTKCLE-VLGISSVHDLQTFSSKILEKELGISVAQRILKLSFGEDNSPV 293
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + + + +L L R+C D R HT+ L
Sbjct: 294 IPSGPPQSFSEEDSF---KKCSSEIEAKKRIEELLASLLNRVCRD----GRKPHTVRLII 346
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ R+ S+ CP+
Sbjct: 347 RRYSPEKHCGRE---SRQCPI 364
>gi|393221247|gb|EJD06732.1| eta DNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 695
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 183/415 (44%), Gaps = 70/415 (16%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+A D + FY EQ + +P V+Q+ G LIAV Y AR +G+ R + D
Sbjct: 45 RIVALCDCNAFYANCEQVRLGLDPEIPLVVLQW-----GMLIAVNYPARKFGISRMDKLD 99
Query: 72 EAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSILARK---- 111
EA++ CP + +V V A+G K L YR ++ S+ +
Sbjct: 100 EARKRCPDLVVVHVATYAQGEDEPKYWDKPDVNTHKISLDLYRRESVKIHSMFKDQLPTG 159
Query: 112 --------------------GRCERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEEAL 150
E+ASIDE ++D + + +L P S VD +
Sbjct: 160 EVGMEHYFMEGYAINAVLLITSIEKASIDEAFIDFSIPVRDELLKRYPYLSEPPVDSPSG 219
Query: 151 K---------------SHILGLESKDGNDSKATVKEWLCRCDADH----RDKLLACGVLI 191
+++ ++ + K E + + D +D LA +
Sbjct: 220 PDTPLPPPPRISYIGLGNLIPIDPPKLDPEKEATTELIEEIEKDAPATWQDVGLAIAAEL 279
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
+ +R +V ++ + SAGIA NK LAKLA+ K Q + ++ G L +P +K++
Sbjct: 280 MASMRKEVHEKLGYLTSAGIARNKFLAKLAASYRKFNTQNILRNLAIPGFLKPMPFQKIR 339
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LL 310
LGGKLG +L E V+TVGDLL +++Q +G W++ I RGI EV+ + ++
Sbjct: 340 FLGGKLGKALATEYDVSTVGDLLHIGIEEMQSKFG-ECSVWVYEILRGIDRAEVKEKAVI 398
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLH 364
KS + K+ P P L + HW+ L EL+ RL E + TL+LH
Sbjct: 399 NKSMNASKNLPKP--LTDPSEGPHWIRMLAAELAIRLNEARENTPGLWPRTLSLH 451
>gi|332028674|gb|EGI68708.1| DNA polymerase iota [Acromyrmex echinatior]
Length = 576
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 162/348 (46%), Gaps = 38/348 (10%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
++ I H+D+DCFY QVE P+L G P V Q N ++ Y AR YG+K+ M
Sbjct: 12 SKTIIHLDVDCFYAQVEMINHPELEGRPLGVQQKN-----IVVTSNYLAREYGIKKCMSV 66
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
EA +CP++ LV DL++YR+ +++ IL + ER D+ +LD+T
Sbjct: 67 QEALRLCPELALV------NGEDLTNYRHYSTKISEILHQFTPLVERLGFDDNFLDVTSI 120
Query: 130 AEAMLAETPPESLD----EVDEEALK--SHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
E L LD + E LK S I G ++ C C R
Sbjct: 121 VEKQLKSQNDTELDMSNSSTEFEDLKELSKIFGPSEEE------------CPCGCHTR-- 166
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L G I ++R ++ +E TCSAGIAHNK++AKLA +NKP QQT + S LL
Sbjct: 167 -LIIGSKIAADIRNRIYEELHLTCSAGIAHNKLVAKLAGSLNKPNQQTLIFPCSGPLLLS 225
Query: 244 SLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
++ + K+ +G K T L + TV D+ + + L+ G + L + A GI
Sbjct: 226 TIGCVSKIPGVGQK-TTELLLSNNIRTVDDIRRIPLENLELKIGIDLARRLKDNAEGIDE 284
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
V+ +S G F +++ VA V+ L L L+E D
Sbjct: 285 TAVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 329
>gi|380025132|ref|XP_003696333.1| PREDICTED: DNA polymerase iota-like [Apis florea]
Length = 566
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 174/380 (45%), Gaps = 40/380 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY Q+E + P+L+ P V Q N ++ Y AR YG+K+ M
Sbjct: 14 RTIIHIDVDCFYAQIEMLRHPELKSKPLGVQQKNM-----VVTSNYIAREYGIKKCMSVQ 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA +CP + LV DL++YR+ ++++ IL + ER D+ ++D+T
Sbjct: 69 EALRLCPGLALV------NGEDLTNYRHFSAKILEILHQFTPLVERLGFDDNFMDVTSIV 122
Query: 131 EAMLAETPPESLD---EVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + L+ +++E I G + +E C C A L
Sbjct: 123 QKYMNSGNNSELNINISMEDENPVGEIFG----------TSEEECPCGCHAR-----LII 167
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QQT + S LL ++
Sbjct: 168 ASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLSNIGS 227
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I K+ +G K T L + T+ DL K + L+ G + L + A GI V+
Sbjct: 228 ISKIPGVGQK-TTQLLMSNNIKTIDDLRKTPLETLEMKIGIDLARKLKDNAEGIDETVVK 286
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+S G F +++ VA V+ L L L+E D +A LT+
Sbjct: 287 PTGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPVAMRLTVRKH 341
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
F S S R+ ++ C L
Sbjct: 342 DFNKSSSGKRE---TRQCAL 358
>gi|82407825|pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|254574964|pdb|3H4B|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Datp
gi|254574967|pdb|3H4D|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Dgtp
Length = 390
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 173/380 (45%), Gaps = 42/380 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+ M
Sbjct: 1 ASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLM 55
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLT 127
+AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT
Sbjct: 56 NVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLT 109
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + DE+ + H+ +S + D H L+
Sbjct: 110 EMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV-- 151
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 152 GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 211
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 212 IKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVI 270
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 271 LSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLIIR 323
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 324 RYSSEKHYGRE---SRQCPI 340
>gi|51247537|pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|51247538|pdb|1T3N|B Chain B, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|73535911|pdb|1ZET|A Chain A, X-Ray Data Do Not Support Hoogsteen Base-Pairing During
Replication By Human Polymerase Iota
Length = 388
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 172/378 (45%), Gaps = 42/378 (11%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+ M
Sbjct: 1 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLMNV 55
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
+AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT+
Sbjct: 56 RDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEM 109
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E L + DE+ + H+ +S + D H L+ G
Sbjct: 110 VEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV--GS 151
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK 248
I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK
Sbjct: 152 QIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIK 211
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 212 EIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILS 270
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
P+S SF + + ++ + +L L R+C Q+ R HT+ L +
Sbjct: 271 GPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLIIRRY 323
Query: 369 KSSDSDSRKKFPSKSCPL 386
S R+ S+ CP+
Sbjct: 324 SSEKHYGRE---SRQCPI 338
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 173/379 (45%), Gaps = 83/379 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY VEQ P+LRG P AV GGG + A YEAR +GV+
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELRGKPVAV-------GGGSERGVVSAASYEARKFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G A+++CP + V K YR A I EV+ +
Sbjct: 61 AMAGALARKLCPDLIFV-------KTRFDRYREIS---------------AQIREVFHEY 98
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE +++ E+K GN S
Sbjct: 99 TDLVE-------PLSLDE-------AYLDVTENKKGNPS--------------------- 123
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L++L
Sbjct: 124 -ATLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPEEVLPFLEALD 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ +LG+ T DL S + LQE +G +G +N+ RGI EV+
Sbjct: 183 IRKFYGV-GKVTAEKMYQLGIFTGNDLKSKSLEFLQEKFG-KSGNHYYNVVRGIHLSEVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+ KS G+ ++F + ++S L +L E ++E + L+++ T+TL
Sbjct: 241 PHRIRKSLGAERTFS-----ENISSEIFMLERL-ENIAEEIERRLKKSNVAGKTVTL--- 291
Query: 367 AFKSSDSDSRKKFPSKSCP 385
K SD K SK+ P
Sbjct: 292 --KIKYSDFTLKTRSKTLP 308
>gi|254574961|pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template
UT
Length = 389
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 172/378 (45%), Gaps = 42/378 (11%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+ M
Sbjct: 2 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLMNV 56
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
+AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT+
Sbjct: 57 RDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEM 110
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E L + DE+ + H+ +S + D H L+ G
Sbjct: 111 VEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV--GS 152
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK 248
I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK
Sbjct: 153 QIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIK 212
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 213 EIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILS 271
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
P+S SF + + ++ + +L L R+C Q+ R HT+ L +
Sbjct: 272 GPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLIIRRY 324
Query: 369 KSSDSDSRKKFPSKSCPL 386
S R+ S+ CP+
Sbjct: 325 SSEKHYGRE---SRQCPI 339
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 139/294 (47%), Gaps = 40/294 (13%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMR 69
+R I VD+D FY VE R PKLR +P AV G G+I+ Y AR +GV+ +M
Sbjct: 83 SRTIVVVDMDMFYAAVEMRDDPKLRDVPLAV------GGLGMISTTNYAARQFGVRAAMP 136
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTD 128
G KE+CP + V V ++ Y +E+ ++ A E S+DE LDLTD
Sbjct: 137 GFIGKELCPDLHFVPV-------NMKKYAGVAAEIRAVFAEYDPDFEAFSLDEACLDLTD 189
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ +++DE+ ESK+ + +EW A A
Sbjct: 190 YIAENWQKYISDAMDEI------------ESKESDK-----EEW-----ASTASGRAAIA 227
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLP 246
++V ELR +V T+ T SAGIA N MLAK+ S MNKP Q +PFS V + LP
Sbjct: 228 AVVVRELRKKVFDCTQLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMTFIRELP 287
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
++K+ +G + +L L V T GDL K+ + T WL + G+
Sbjct: 288 VRKIGGIGKVMEKTLNEALDVQTGGDLFD-QRGKIAHLFSGKTAMWLLQTSLGV 340
>gi|373856739|ref|ZP_09599483.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
gi|372453718|gb|EHP27185.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
Length = 433
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 157/354 (44%), Gaps = 67/354 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+I HVD++ FY VE P L+G P A+ E + G ++ YEAR +GVK +M
Sbjct: 9 GRVILHVDMNSFYASVEMAHDPSLKGKPLAIAGNVEERRGIIVTCSYEARKFGVKTTMPL 68
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
+AK++CPQI + R K + YR A + + IL R + E SIDE Y+D+TD+
Sbjct: 69 WQAKKLCPQI------IVR-KPNFDRYRAASTSMFDILRRYSQLVEPVSIDEGYMDITDS 121
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E ES+ EV
Sbjct: 122 YELGSPLQIAESIQEV-------------------------------------------- 137
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+LKE + CS GIA NK LAK+AS M KP T + + +L + +
Sbjct: 138 ---------LLKELDIPCSIGIAPNKFLAKMASDMKKPLGITILRKRDISSVLWPMEAGE 188
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
M +G K L LG+ T+GDL K ++ +L+ G N G L + A G+ V
Sbjct: 189 MHGVGKKTAEKLA-PLGILTIGDLAKANDIQLKALLGIN-GLRLKDRANGVDKRTVN--- 243
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
P+S KS L S QH L Q+ E L E++ L++ K +A T+++
Sbjct: 244 -PESVYDFKSIGNSTTLAKDVSNQHLLFQVIEGLVEKVTQRLKRKKVLAQTISV 296
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 172/382 (45%), Gaps = 83/382 (21%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI-----AVGYEARNYG 63
S R I H+D+D FY VEQ P+L GLP AV GG I A YEAR +G
Sbjct: 3 SPIRKIIHIDMDAFYASVEQMDHPELIGLPIAV-------GGSEIRGVVSAASYEARKFG 55
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 123
V+ +M G +AK +CP++ V K YR +S+ RK ++
Sbjct: 56 VRSAMTGIQAKRLCPELIFV-------KPRFERYRE-----ISLKIRK----------IF 93
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
+ TD E P SLDE L + N+ AT
Sbjct: 94 YEYTDLVE-------PLSLDEA--------YLDVTQNKKNNPSAT--------------- 123
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
LI +E+R +++ E T SAGI+ NK +AK+AS NKP Q T+ V L+
Sbjct: 124 ------LIASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHPDDVTLFLE 177
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
SL IKK + GK+ T +LG+ T DL + + L+E +G +GT +++ RGIS
Sbjct: 178 SLDIKKFYGI-GKVTTEKMYQLGIYTGQDLKSKTIEYLEEHFG-KSGTHYYHLVRGISNS 235
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V K + + KS T + + ++ + E +++ L L+++K T+TL
Sbjct: 236 PV------KPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKLSGKTVTL 289
Query: 364 HASAFKSSDSDSRKKFPSKSCP 385
K SD ++ SK+ P
Sbjct: 290 -----KIKYSDFSQQTRSKTLP 306
>gi|76157725|gb|AAX28563.2| SJCHGC04877 protein [Schistosoma japonicum]
Length = 193
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI+ +D+DCFYVQVEQR+ P+ +G P V QY+EWKGGG +A+ YEAR G+KR M GD
Sbjct: 5 RIVMLLDMDCFYVQVEQREAPETKGKPCIVSQYSEWKGGGALAISYEARALGIKRGMFGD 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
E + P + + +VP RGKA+L+ YR A SEV+ ++ ERASIDE Y+DLT
Sbjct: 65 EIRAHYPDVIIFKVPEKRGKAELTKYRVASSEVIQCISEFTSDIERASIDEAYVDLTAIV 124
Query: 131 EAML 134
++ L
Sbjct: 125 DSTL 128
>gi|390600437|gb|EIN09832.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 634
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 181/419 (43%), Gaps = 58/419 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA D D FY EQ + P V Q++ LIAV Y AR YG+ R +
Sbjct: 47 RVIALCDSDAFYAACEQVRLGIDPAKPLVVQQWDM-----LIAVNYPARKYGISRMDKAR 101
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---KG 112
+AKE CP + V V + K L YR +V ++ +G
Sbjct: 102 DAKEKCPDLICVHVATYKEGAKEPGYWPNPDTRTHKVSLDHYRRESMKVAAMFKEGVPEG 161
Query: 113 RCERASIDEVYLDLTDAAEAM-------LAETPPESLDEVDE------------EALKSH 153
E+ASIDE ++D T M LA PP++ +D + +
Sbjct: 162 EVEKASIDEAFIDFTLPVRNMMLDRYPYLARVPPDAPHGLDSRLPPPPPIDWSGKGVVVP 221
Query: 154 ILGLESKDGNDSKATVKEWLCRCDA--DHRDKLLACGVLIVTELRMQVLKETEFTCSAGI 211
I ++ + +D E CDA D L+ ++ ++R + + +T SAGI
Sbjct: 222 IKPVDDEKTDDDDQNSDEDYDDCDAATTWHDVALSLAAELMQKIREDIHTKLGYTTSAGI 281
Query: 212 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK--MKQLGGKLGTSLQNELGVTT 269
A NK LAKLA+ KP QT + S++ L + +K ++ LGGKLG +L E TT
Sbjct: 282 ARNKFLAKLAASYRKPMSQTILRNSAIPNYLRPMKFQKVSIRNLGGKLGEALAQEFDATT 341
Query: 270 VGDLLKFS-EDKLQESYGFNTGTWLWNIAR-----GISGEEVQAR-LLPKSHGSGKSFPG 322
VGDLL S D +Q +G W++ I R GI EV+ + ++ KS + K+
Sbjct: 342 VGDLLNVSLADVMQRKFG-EESLWVYEILRYNTRFGIDRSEVKEKSIVNKSMLASKNLAT 400
Query: 323 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 380
P A + HW+ L EL+ RL E + TL LH + + FP
Sbjct: 401 PVAKPSEG--HHWIRVLAAELALRLNEARESRPGLWPKTLVLHVRQGYAQSRSKQGPFP 457
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 172/375 (45%), Gaps = 75/375 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D F+ VEQ QP+LRG+P AV + A YEAR +GV+ +M G
Sbjct: 8 RKIIHVDMDAFFASVEQLDQPELRGIPLAVGGGGKRGVVA--AASYEARAFGVRSAMSGI 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A +CPQ L+ VP Y+ +++ +I + E S+DE YLD+T
Sbjct: 66 MASRLCPQ--LIFVP-----PRFERYKEVSAQISTIFRQHTDLVEPLSLDEAYLDVT--- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
K GN S + L
Sbjct: 116 ---------------------------HHKKGNPSAS----------------------L 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +E+R ++LK T SAGI+ NK +AK+AS +NKP Q T+P V L++L I+K
Sbjct: 127 IASEIRTEILKLTGLHASAGISINKFVAKIASDINKPNGQKTIPPEEVLSFLENLDIRKF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ LG+ T DL SED L+ +G +G + + RG+ EV +
Sbjct: 187 FGI-GKVTADKMYGLGIFTGADLKLKSEDFLETHFG-KSGRYFYRAVRGVHHSEVSPERI 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
KS G+ ++F + + ++ + L EELS+RL ++K T+TL K
Sbjct: 245 QKSVGAERTF--NENISSEVFLEGKIIALAEELSKRLG----RSKLSGKTITLK---LKY 295
Query: 371 SDSDSRKKFPSKSCP 385
+D +++ + SK+ P
Sbjct: 296 ADFNTQTR--SKTLP 308
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 153/341 (44%), Gaps = 74/341 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY VEQ P+L+G P AV GGG + A YEAR +GV+
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELKGKPLAV-------GGGAKRGVVSAASYEARKFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G AK+ CP++ V+ R K + R E + E S+DE YLD+
Sbjct: 61 AMSGFLAKKRCPELIFVRPRFDRYKEISTQIRKIFYEYTDL------VEPLSLDEAYLDV 114
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T ++K GN S +
Sbjct: 115 T------------------------------KNKKGNPSAS------------------- 125
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++LK+ T SAGI+ NK +AK+AS NKP Q TVP V L++L
Sbjct: 126 ---LIAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPPEEVLDFLEALD 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ +LG+ T DL D L E +G +G + +N+ RGI EV+
Sbjct: 183 IRKFYGV-GKVTAERMYQLGIFTGKDLKTKDVDFLTEHFG-KSGKFYFNVVRGIHLSEVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS G+ ++F L + + L + EL +RL
Sbjct: 241 PNRIAKSVGAERTFSD--NLTSEIFMLEKLENIANELEKRL 279
>gi|383862079|ref|XP_003706511.1| PREDICTED: DNA polymerase iota-like [Megachile rotundata]
Length = 565
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 173/378 (45%), Gaps = 36/378 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY QVE + P+ G P V Q N ++ Y AR YG+K+ M
Sbjct: 14 RTIIHIDVDCFYAQVEMLRHPEFEGKPLGVQQKNI-----VVTSNYLAREYGIKKCMSVQ 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA ++CP + LV DL++YR+ +++ +L + ER D+ +LD T
Sbjct: 69 EALKLCPGLNLVN------GEDLTNYRHFSDKILEVLHQFTPLVERLGFDDNFLDATSLV 122
Query: 131 EAMLAETPPESLDEVDEEALKSHI-LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ + ++ +E L I + E+ G + +E C C A L
Sbjct: 123 Q--------KYMNPGNESDLNMSISMEDETPIGEVFGSVEEECPCGCHAR-----LIIAT 169
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK 248
I E+R ++ KE TCSAGIAHNK+LAKL ++KP QQT + + LL S+ +
Sbjct: 170 KIAAEIRQRIHKELHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCNAPALLSSIGSVS 229
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K+ +G K T L + TV DL K + L+ G + L + A G+ V+
Sbjct: 230 KIPGVGQK-TTQLLLSNNIKTVDDLRKTPLETLEGKIGVDLARKLKDNAEGVDETVVKPT 288
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
+S G F +++ VA V+ L L L+E D +A LT+ F
Sbjct: 289 GKKQSIGLEDGF---KSVSLVAEVESRLGVLLRRLTELAMED--GRIPVAMRLTVRKHDF 343
Query: 369 KSSDSDSRKKFPSKSCPL 386
S R+ ++ C L
Sbjct: 344 NKPSSGKRE---TRQCAL 358
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 170/374 (45%), Gaps = 73/374 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQ QP+LRG P AV NE +G + A YEAR +GV+ ++ G
Sbjct: 8 RKIIHIDMDAFYASVEQLDQPELRGKPIAVGG-NEIRGV-VSAASYEARKFGVRSALSGV 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK+ CP + V K Y ++ SI + + TD E
Sbjct: 66 LAKKYCPDLIFV-------KPRFDRYTEISKKIRSI---------------FYEYTDLVE 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K ++ +I
Sbjct: 104 -------PLSLDE-----------------------------AYLDVTQNKKNMSSATMI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ E T SAGI+ NK +AK+AS NKP Q TV + V L+ LPIKK
Sbjct: 128 AAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPNGQKTVAPNEVLLFLEQLPIKKFY 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ T +LG+ T DL S D L++ +G +GT+ +++ RG+ EV+A +
Sbjct: 188 GV-GKVTTEKMYQLGIFTGLDLKSKSLDFLEKHFG-KSGTFYYHVVRGVHNGEVKANRIA 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS + +F L + + L+++ EL R L+++++ T+TL K
Sbjct: 246 KSVAAEHTF--DINLTSEIFMLEKLSKIANELERR----LQKHQKAGKTVTL-----KIK 294
Query: 372 DSDSRKKFPSKSCP 385
SD ++ SK+ P
Sbjct: 295 YSDFTQQTRSKTLP 308
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 156/352 (44%), Gaps = 69/352 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P L+G P AV G + A YEAR YGV+ +M
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPTLKGKPIAV---GGQHRGVVAAASYEARKYGVRSAMPSK 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AKE CPQ+ V AR K R E + E S+DE YLD+T+ +
Sbjct: 65 TAKEKCPQLIFVPPRFARYKEISKKIREIFYEYTDL------VEPLSLDEAYLDVTENKK 118
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
G+ES + LI
Sbjct: 119 ------------------------GMESAN----------------------------LI 126
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+ LP++K
Sbjct: 127 AKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKMEEFLEELPVEKFY 186
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ + LG+ DL K S + L +G +G +N+ RGI EV+ +
Sbjct: 187 GV-GKVTANKMFSLGIYKGKDLKKKSLEDLIRIFG-KSGQHYYNVVRGIHTSEVKPHRIQ 244
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS ++F + + Q +N+ E L++ L L++N + TLTL
Sbjct: 245 KSVAVERTF-----FEDLLDEQQ-INEKLESLAQELHQRLQKNNILGRTLTL 290
>gi|407921870|gb|EKG15007.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 591
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 146/299 (48%), Gaps = 35/299 (11%)
Query: 87 VARGKADLSSYRNAGSEVVSILARKG-------RCERASIDEVYLDLTDAAEAMLAETPP 139
+A K L YR +++++ KG R E+ASIDEV++DL+ +++ E P
Sbjct: 1 MATHKVSLDPYRLESRRILALI--KGSLPSELQRVEKASIDEVFMDLSAHVHSVMLERYP 58
Query: 140 E-----SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL--------LA 186
E D++ E I L+ + + L DA+ + +
Sbjct: 59 ELAGPPPYDDLMENLPTPPITALDWQ---------TDHLVDLDANQTEDDDPDWDDIAIL 109
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
G IV ++R ++ +E ++TCSAG+A NKMLAKL SG KP QQT + +V+ L +
Sbjct: 110 IGSEIVRDIRAKIFEELKYTCSAGVARNKMLAKLGSGHQKPNQQTVIRNRAVQNFLSEMK 169
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
K++ LGGKLG + TV DLL ++LQ G TG WL++I RG EV
Sbjct: 170 FTKIRNLGGKLGDEVVAMFNTETVKDLLDVPLEQLQR-LGDGTGIWLYDIIRGNDTSEVN 228
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 364
+RL KS S KSF ++ T WL ++ R + + +NKR T+TLH
Sbjct: 229 SRLKIKSMLSAKSFRP--SINTFEQGIRWLRIFSADIFSRCVEEGVLENKRRPKTITLH 285
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 164/353 (46%), Gaps = 70/353 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P+LRG AV NE +G + A Y+AR +GV+ +M G
Sbjct: 8 RKIIHVDMDAFYASVEQLDFPELRGKALAVGG-NEVRGV-VSAASYQARAFGVRSAMSGV 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDAA 130
AK +CP EL+ VP YR ++ +I L E S+DE YLD+T
Sbjct: 66 LAKRLCP--ELIFVP-----PRFDRYREISMKIRAIFLEYTDLVEPLSLDEAYLDVT--- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+K GN S L
Sbjct: 116 ---------------------------ENKKGNPS----------------------ATL 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +++R ++ ++T CSAGI+ NK +AK+AS NKP Q TV V L++L I+K
Sbjct: 127 IASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFLEALDIRKF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ +LG+ T DL K + L E +G +G+ +N+ RGI V+ +
Sbjct: 187 YGV-GKVTAQKMYQLGIFTGLDLKKKPIEFLNEHFG-KSGSLYYNVVRGIHNSPVKPDRV 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
PKS G+ ++F + ++S L +L E LS L L +NK T+TL
Sbjct: 245 PKSVGAERTFT-----ENLSSEVFMLERL-EHLSVELEQRLRKNKVAGKTITL 291
>gi|79529581|ref|NP_199288.4| DNA repair protein REV1 [Arabidopsis thaliana]
gi|59796995|dbj|BAD89586.1| deoxycytidyl transferase [Arabidopsis thaliana]
gi|332007773|gb|AED95156.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1101
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 178/420 (42%), Gaps = 72/420 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I H+DLDCF+V V + + +L P AV + KG I+ Y AR YGVK M
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD--- 484
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
L +V+ E L S I
Sbjct: 485 ----------LSDVETEVLASTI------------------------------------- 497
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ +
Sbjct: 498 ----RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLP 553
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS G+ ++ G R + VQH+L LC+E+S R L+ + I T TL K
Sbjct: 613 KSIGAEVNW-GVR-FRDQQDVQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKKRKKD 666
Query: 372 DSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 429
+ K C R T D + Q ++ GSF + + G +++ L
Sbjct: 667 AEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKL 726
>gi|224105631|ref|XP_002313880.1| predicted protein [Populus trichocarpa]
gi|222850288|gb|EEE87835.1| predicted protein [Populus trichocarpa]
Length = 1191
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 181/428 (42%), Gaps = 74/428 (17%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVK 65
D+S I HVD+DCF+V V R P+L P AV + KG I+ Y ARNYGVK
Sbjct: 434 DNSNKSTIIHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARNYGVK 493
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYL 124
+ +AK +CPQ LV P + +Y ++ +IL + + + S DE +L
Sbjct: 494 AGIFVRDAKALCPQ--LVIFPY-----NFKAYEEVADQLYNILHKHCHKVQAISCDEAFL 546
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T+ KD D +
Sbjct: 547 DITE-------------------------------KDMGDPE------------------ 557
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
L+ + +R ++ T T SAGIA N ++A+LA+ KP Q +P SV L
Sbjct: 558 -----LLASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHK 612
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPIK + +G L L+ + V T G L S++ LQ+ +G TG LWN +RG+
Sbjct: 613 LPIKALPGIGHVLEEKLKKQ-NVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRL 671
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTL 363
V K+ G+ ++ G R K + Q +L LC+E+S RL Q R+ T TL
Sbjct: 672 VGNIQESKTIGAEVNW-GVR-FKDLQDSQCFLLNLCKEVSFRL-----QGCRVQGRTFTL 724
Query: 364 HASAFKSSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 421
+ + K C L + T I D Q ++ GSF + +
Sbjct: 725 KIKKRRKDAGEPAKYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRG 784
Query: 422 SGWRITAL 429
G +++ L
Sbjct: 785 VGLQVSKL 792
>gi|134078076|emb|CAK40159.1| unnamed protein product [Aspergillus niger]
Length = 1165
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 163/354 (46%), Gaps = 47/354 (13%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
+P R I HVD DCF+ V K+P+L+G P AV + G + + YEAR +G+
Sbjct: 365 KPAPGARRYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGI 423
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVY 123
K M A + CP++++V D +Y A + S IL+ G + SIDE
Sbjct: 424 KNGMWMKGALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEAL 476
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
+D+T LE+ G+D + + L R A +
Sbjct: 477 VDITTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE- 508
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
I ELR V KET S GI N +LAK+A KPA Q + +V +
Sbjct: 509 -------IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIG 561
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+L ++ + +G LGT L++ LGV V D+ + D+L S G TG +W ARGI
Sbjct: 562 NLTVQDLPGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRT 620
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV +L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 621 EVGNEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|350639910|gb|EHA28263.1| hypothetical protein ASPNIDRAFT_43424 [Aspergillus niger ATCC 1015]
Length = 1165
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 163/354 (46%), Gaps = 47/354 (13%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
+P R I HVD DCF+ V K+P+L+G P AV + G + + YEAR +G+
Sbjct: 365 KPAPGARRYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGI 423
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVY 123
K M A + CP++++V D +Y A + S IL+ G + SIDE
Sbjct: 424 KNGMWMKGALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEAL 476
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
+D+T LE+ G+D + + L R A +
Sbjct: 477 VDITTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE- 508
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
I ELR V KET S GI N +LAK+A KPA Q + +V +
Sbjct: 509 -------IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIG 561
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+L ++ + +G LGT L++ LGV V D+ + D+L S G TG +W ARGI
Sbjct: 562 NLTVQDLPGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRT 620
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV +L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 621 EVGNEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|307203609|gb|EFN82638.1| DNA polymerase iota [Harpegnathos saltator]
Length = 581
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 162/348 (46%), Gaps = 40/348 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R + H+D+DCFY QVE + P+ G P V Q N ++ Y AR YGVK+ M+
Sbjct: 14 RTVIHLDVDCFYAQVEMLRHPEFEGKPLGVQQKNI-----VVTSNYLAREYGVKKCMQVQ 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA +CP + LV DL++YR+ +++ IL + ER D+ +LD++
Sbjct: 69 EALRLCPGLVLV------NGEDLTNYRHYSTKISDILHQFTPLVERLGFDDNFLDVSLVV 122
Query: 131 EAMLA-------ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
E L + S+DE+ +E++ S I G ++ C C R
Sbjct: 123 EKHLKPQNDSELDMSGSSMDEILKESV-SKIFGPSEEE------------CPCGCHVR-- 167
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
L + E+R ++ +E TCS GIAHNK+LAKLA +NKP QQT + S LL
Sbjct: 168 -LIIASKLAAEIRNRIFQELHLTCSVGIAHNKLLAKLAGSLNKPNQQTLIFPCSGPMLLS 226
Query: 244 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
++ I K+ +G K L + + TV DL + L+ G + L + A GI
Sbjct: 227 AMGSISKIPGVGQKTMELLLSN-NIRTVDDLRRIPLQNLELKIGVDLARKLKDNAEGIDE 285
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
V+ +S G F +++ VA V+ L L L+E D
Sbjct: 286 TAVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGGLLRRLTEMAMED 330
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 169/379 (44%), Gaps = 83/379 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY VEQ P+L+G P AV GGG + A YEAR +GV+
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPELKGKPIAV-------GGGSKRGVVSAASYEARKFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G A+ CP++ V+ R K R E + E S+DE YLD+
Sbjct: 61 AMAGAIARRNCPELIFVRPRFDRYKEISKQIRGIFFEYTDL------VEPLSLDEAYLDV 114
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T E+K GN S
Sbjct: 115 T------------------------------ENKKGNPS--------------------- 123
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++ +T T SAGI+ NK +AK+AS NKP Q TV V L++L
Sbjct: 124 -ATLIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLENLD 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ LG+ T DL + S D L++ +G +G++ +N+ RGI V+
Sbjct: 183 IRKFYGV-GKVTAEKMYRLGIFTGFDLKQKSVDFLEKHFG-KSGSYYYNVVRGIHLSSVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+PKS G+ ++F + ++S L +L E ++ L L+++K T+TL
Sbjct: 241 PHRIPKSVGAERTF-----FENLSSEIFMLEKL-ENIASELEKRLQKSKIAGKTITL--- 291
Query: 367 AFKSSDSDSRKKFPSKSCP 385
K SD + SK+ P
Sbjct: 292 --KIKYSDFTLQTRSKTLP 308
>gi|317031843|ref|XP_001393536.2| DNA damage repair protein Mus42 [Aspergillus niger CBS 513.88]
Length = 1155
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 163/354 (46%), Gaps = 47/354 (13%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
+P R I HVD DCF+ V K+P+L+G P AV + G + + YEAR +G+
Sbjct: 365 KPAPGARRYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGI 423
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVY 123
K M A + CP++++V D +Y A + S IL+ G + SIDE
Sbjct: 424 KNGMWMKGALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEAL 476
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
+D+T LE+ G+D + + L R A +
Sbjct: 477 VDITTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE- 508
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
I ELR V KET S GI N +LAK+A KPA Q + +V +
Sbjct: 509 -------IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIG 561
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+L ++ + +G LGT L++ LGV V D+ + D+L S G TG +W ARGI
Sbjct: 562 NLTVQDLPGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRT 620
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV +L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 621 EVGNEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 167/380 (43%), Gaps = 83/380 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY VEQ+ P+L+G P AV GGG + A YEAR YGV+
Sbjct: 8 RKIIHVDMDAFYASVEQKDNPELKGKPIAV-------GGGSKRGVVSAASYEARKYGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G A++ CP++ V+ R K R E + E S+DE YLD+
Sbjct: 61 AMSGYLAQKNCPELIFVKPRFDRYKEISQQIRQVFFEYTDL------VEPLSLDEAYLDV 114
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T ++K GN S
Sbjct: 115 T------------------------------QNKKGNPS--------------------- 123
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++L +T T SAGI+ NK +AK+AS NKP Q TV V L +L
Sbjct: 124 -ATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEEVLEFLSALD 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ +LG+ T DL K S + L + +G +G +N+ RGI V+
Sbjct: 183 IRKFYGV-GKVTAEKMYQLGIFTGADLKKKSLEFLNQEFG-KSGQHYYNVVRGIHLSTVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
PKS G+ ++F S + ++ Q E +++ L L+++K T+TL
Sbjct: 241 PSRTPKSVGAERTFSEN------LSSEIFMLQRLENIAQELEKRLKKSKLAGKTVTL--- 291
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
K SD + SK+ P
Sbjct: 292 --KIKYSDFTLQTRSKTLPF 309
>gi|449495749|ref|XP_004159933.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1032
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 140/338 (41%), Gaps = 70/338 (20%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I HVD+DCF+V V R PK + P AV + KG I+ Y AR+YGVK M +
Sbjct: 347 IIHVDMDCFFVSVVIRNIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRD 406
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA---SIDEVYLDLTDA 129
AK +CP LV P D SY + IL + CE+ S DE +LD++
Sbjct: 407 AKALCPH--LVIFPY-----DFKSYEGVADQFYDILHK--HCEKVQAVSCDEAFLDISGT 457
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ VD E L S I
Sbjct: 458 -------------NNVDPEVLASKI----------------------------------- 469
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
R ++ T T SAGIA N ++A+LA+ KP Q +P V L+ LPIK
Sbjct: 470 ------RKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKD 523
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G L L+ V T L S+D LQ+ +G TG LWN +RG+ V L
Sbjct: 524 LPGIGHALEEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVG--L 580
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ +S G K Q +L LC+E+S RL
Sbjct: 581 IQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRL 618
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 172/386 (44%), Gaps = 85/386 (22%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLIAVG-YEAR 60
P+++ R I H+D+D FY VEQ P LRG P AV GG G++A YEAR
Sbjct: 2 PNTTVNRKIIHIDMDAFYASVEQMDNPALRGKPVAV-------GGSENRGVVAAASYEAR 54
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASI 119
+GV+ ++ G AK+ CP++ V K Y+ +++ I E S+
Sbjct: 55 KFGVRSAISGIMAKKYCPELIFV-------KPRFDRYKEISTKIHKIFHEYTDLVEPLSL 107
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE YLD+T ++K GN S
Sbjct: 108 DEAYLDVT------------------------------QNKKGNPSAG------------ 125
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
L+ E+R ++ KE T SAGI+ NK +AK+AS NKP Q TV V
Sbjct: 126 ----------LLAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPDEVN 175
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
L+ LPI+K + GK+ T +LGV T DL S + L++ +G +G + +N+ RG
Sbjct: 176 AFLEELPIRKFYGV-GKVTTEKMYQLGVFTGLDLKSKSVEFLEKHFG-KSGNFYFNVVRG 233
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I EV++ + KS + +F S + ++ + E ++ L L ++K
Sbjct: 234 IHNSEVKSDRITKSVAAEHTFD------VNLSSEIFMLEKLEGIAIALERRLNKHKVAGK 287
Query: 360 TLTLHASAFKSSDSDSRKKFPSKSCP 385
T+TL K SD ++ SK+ P
Sbjct: 288 TITL-----KIKYSDFTQQTRSKTVP 308
>gi|299749828|ref|XP_001836363.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298408617|gb|EAU85452.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 669
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 173/400 (43%), Gaps = 72/400 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ D D FY E + + P V+Q++ LIAV Y AR YG+ R +
Sbjct: 45 RVVGLCDSDAFYAACEMVRLGVDKDTPLVVLQWDS-----LIAVNYPARKYGISRMDKKK 99
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 112
+A + CP +++V V + K L YR ++ ++ L
Sbjct: 100 DALKRCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESMKIAALFRELLPGC 159
Query: 113 RCERASIDEVYLDLTDAAEAML-------AETPPESLDEVDEEALK-------------- 151
E+ASIDE ++D T +L A+ PP++ + VD
Sbjct: 160 EVEKASIDEAFIDFTKPVREVLLQRYPYLAQVPPDAPNGVDTPLPPPPPISWYGTGDLIP 219
Query: 152 ------SHILGLESKDGNDSKATVKEWLCR-------------CDADHRDKLLACGVLIV 192
+ L +G D +T K+ + D L+ +V
Sbjct: 220 INPVPATSTLTTGPVEGQDQPSTSKQQPAEEAVHDEGLQDGEDANTTWHDVALSIAAGMV 279
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
+ R VL++ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++
Sbjct: 280 MKARKGVLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRF 339
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR---GISGEEVQAR- 308
LGGKLG +L E TVGDLL S D++Q +G ++ W++ I R GI EV+ +
Sbjct: 340 LGGKLGRALAQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRQYSGIDRSEVKDKG 398
Query: 309 -LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
L KS + K+ P P + + HW+ L EL+ RL
Sbjct: 399 TTLTKSMLASKNLPKP--ITAASEGYHWIRVLAAELALRL 436
>gi|412988027|emb|CCO19423.1| DNA polymerase eta [Bathycoccus prasinos]
Length = 741
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 96/172 (55%), Gaps = 27/172 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-------------------- 51
R+IAH DLDCFY QVE+ L+ +PT V QY+ ++ G
Sbjct: 26 RVIAHFDLDCFYCQVERSLDDSLKEMPTGVCQYDPFERDGVSTRDAMGDRKTHLTRPGAN 85
Query: 52 --LIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA 109
LIAV YEAR GVKR+M+ EA+ CP++ VQVP KADL YR+AG++V + LA
Sbjct: 86 NSLIAVSYEARKKGVKRNMKIGEARRCCPEMIFVQVPTKHSKADLKIYRDAGAKVAAELA 145
Query: 110 RKGRCERASIDEVYLDLTDAAEAMLAETPPESLDE-----VDEEALKSHILG 156
+ G ERASIDE YLD+T A A+L + +D + E +SH+ G
Sbjct: 146 KHGTIERASIDEAYLDVTKEANAVLEKCERNEMDFYRDVLMSERVSRSHVAG 197
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 130/272 (47%), Gaps = 15/272 (5%)
Query: 170 KEWLCR--CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
K WL R + HR+KL G + R +T S G++ NKMLAKL SGMNKP
Sbjct: 285 KSWLNRPLSEWSHREKLKIAGAYVCNVAREDCFVNLGYTLSCGVSSNKMLAKLTSGMNKP 344
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 287
T + S LL+ LPI +++ LGG LG L LGVTT+G L K L + G
Sbjct: 345 NCCTILEESFTPSLLEHLPIDRIRGLGGNLGEELSEVLGVTTIGGLAKADRKSLLMALGR 404
Query: 288 NTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 345
+ LW ARG+ + V+ R PKS + K+F G L+T V W+ +L EELSE
Sbjct: 405 DEKKTLWVQRAARGVDDDPVKERSAPKSIATSKTFRGAMCLETTDQVLKWIGELAEELSE 464
Query: 346 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 405
R D + +R TLTL + ++ S R S PL Q D +
Sbjct: 465 RTELDGQDWRRHPKTLTLGIRSNLTAHSAHR------SHPLSGSGNDCQADNLKTLGGTI 518
Query: 406 -REFLGSFGVKTQGSHYSGWRITALSVSASKI 436
++FL +G+ G++ T LS++ S
Sbjct: 519 FKKFLAEWGIMNN----RGFQCTVLSLTTSNF 546
>gi|211065519|ref|NP_001122409.2| polymerase (DNA directed) iota [Nasonia vitripennis]
Length = 635
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 161/353 (45%), Gaps = 26/353 (7%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P R I H+D+D FY QVE + P+ +G P V Q N ++ YEAR +GVK
Sbjct: 18 PSIEHPRSIVHIDVDYFYAQVEMMRHPEFQGKPLGVQQKN-----IVVTCNYEARAFGVK 72
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ M +EA +CP + LV+ DL+ YR ++++ +L + E+ +DE ++
Sbjct: 73 KCMLIEEALRLCPSLILVK------GEDLTPYRRMSAKILELLHQFTSSVEKLGLDENFI 126
Query: 125 DLTDAAEAMLAETPPESLD-EVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDA 178
D+T S + DE + ++ +D + K E C C
Sbjct: 127 DVTSVVNEYTTRIGNNSKSSQHDENTTREESTFVQQEDMDHCMPVGKIFSTPEEECPCGC 186
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PFSS 237
R LA I ++R ++L E TCSAGIAHNK+LAKL +NKP QQT V P S+
Sbjct: 187 HTR---LAVASSIAMDMRSKILNELGLTCSAGIAHNKLLAKLGGAVNKPNQQTVVYPCSA 243
Query: 238 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 297
L + K+ +G + SL + TV D+ K ++LQ G + + A
Sbjct: 244 ASLLSSLGSVSKIPGVGRRTAESLTAN-NILTVDDVRKTPLERLQVKIGKELARKIKDYA 302
Query: 298 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 350
GI V+ P+S G F + + V V+ L+ L L+E D
Sbjct: 303 EGIDDTPVKPSGRPQSIGLEDGF---KKVSLVDEVESRLSALLRRLTELAAED 352
>gi|366161628|ref|ZP_09461490.1| DNA polymerase IV [Escherichia sp. TW09308]
gi|432371030|ref|ZP_19614094.1| DNA polymerase IV [Escherichia coli KTE11]
gi|430900243|gb|ELC22262.1| DNA polymerase IV [Escherichia coli KTE11]
Length = 351
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 151/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K+ L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKYDLVMLLKRFG-KFGHILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 133/302 (44%), Gaps = 68/302 (22%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVK 65
S +R I H+D+D FY VEQR P+LRG P V W G + A YEAR +GV
Sbjct: 2 SDASRKIVHIDMDAFYASVEQRDNPELRGKPVVVA----WTGPRSVVCAASYEARRFGVH 57
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYL 124
+M A+ +CPQ V VP D + YR ++ I R E S+DE YL
Sbjct: 58 SAMSAVRAQRLCPQA--VYVP-----PDFNRYREVSRQIRQIFGRHTDLIEPLSLDEAYL 110
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T + LGL S
Sbjct: 111 DVT------------------------VNKLGLPS------------------------- 121
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ +R Q+ ET T SAG+A NK LAK+AS NKP Q + S V L
Sbjct: 122 ---ATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIRPSRVLEFLQP 178
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP++K+ +G + L+ +LG+ TVGDL + +L+ +G G L+ +ARGI E
Sbjct: 179 LPVRKVPGVGKVMQARLE-QLGIHTVGDLATHAAQELEHYFG-RYGRRLYELARGIDDRE 236
Query: 305 VQ 306
VQ
Sbjct: 237 VQ 238
>gi|186529382|ref|NP_001119373.1| DNA repair protein REV1 [Arabidopsis thaliana]
gi|384950720|sp|A3EWL3.1|REV1_ARATH RecName: Full=DNA repair protein REV1; Short=AtREV1; AltName:
Full=Rev1-like terminal deoxycytidyl transferase
gi|125656400|gb|ABN48548.1| polymerase ATREV1-1105 [Arabidopsis thaliana]
gi|332007774|gb|AED95157.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1105
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 178/424 (41%), Gaps = 76/424 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I H+DLDCF+V V + + +L P AV + KG I+ Y AR YGVK M
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD--- 484
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
L +V+ E L S I
Sbjct: 485 ----------LSDVETEVLASTI------------------------------------- 497
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ +
Sbjct: 498 ----RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLP 553
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 312 KSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 613 KSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKK 666
Query: 368 FKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 425
K + K C R T D + Q ++ GSF + + G +
Sbjct: 667 RKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQ 726
Query: 426 ITAL 429
++ L
Sbjct: 727 VSKL 730
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 151/342 (44%), Gaps = 75/342 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMRG 70
R I HVD+D F+ VEQR P+LRG P V+ + G G++A YEAR +G+ +M
Sbjct: 13 RKIIHVDMDAFFAAVEQRDHPELRGQP--VIVGGDPAGRGVVATCSYEARRFGIHSAMTA 70
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-----ERASIDEVYLD 125
A+ +CPQ V + + +YR A +V+ IL RC E S+DE +LD
Sbjct: 71 ARARSLCPQAVFV-------RPRMDAYREASRQVMGIL----RCYTPLVEPLSLDEAFLD 119
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T A + DG
Sbjct: 120 VTAA-----------------------------TADG----------------------- 127
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
V I E+R ++ +ET T SAG+++NK+LAKLAS KP VP L L
Sbjct: 128 VLAVRIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLAFLAPL 187
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P+ K+ +G L + +G+ TV DL S + L +G G W + +ARGI V
Sbjct: 188 PVGKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFG-KAGLWFYEVARGIDSRPV 245
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
Q KS G ++F P+ L+ + L Q+ ++S RL
Sbjct: 246 QTSRQRKSVGYERTF--PQNLEDPKVMLSTLRQMAGQVSARL 285
>gi|238828270|pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
gi|238828273|pdb|3GV5|D Chain D, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
Length = 420
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 173/383 (45%), Gaps = 43/383 (11%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P++S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK
Sbjct: 23 PNAS-SRVIVHVDLDCFYAQVEXISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVK 76
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+ +AKE CPQ+ LV DL+ YR +V +L ER DE ++
Sbjct: 77 KLXNVRDAKEKCPQLVLV------NGEDLTRYREXSYKVTELLEEFSPVVERLGFDENFV 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DLT+ E L + DE+ + H+ +S + D H L
Sbjct: 131 DLTEXVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLL 174
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ G I E R + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 175 V--GSQIAAEXREAXYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 245 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 291
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 292 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRL 344
Query: 364 HASAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 345 IIRRYSSEKHYGRE---SRQCPI 364
>gi|358372217|dbj|GAA88822.1| DNA damage repair protein Mus42 [Aspergillus kawachii IFO 4308]
Length = 1166
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 164/354 (46%), Gaps = 47/354 (13%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
+P R I HVD DCF+ V K+P+L+G P AV + G + + YEAR +G+
Sbjct: 366 KPAPGARRYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGI 424
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVY 123
K M A + CP++++V D +Y A + S IL+ G + SIDE
Sbjct: 425 KNGMWMKGALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEAL 477
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
+D+T LE+ G+D + + L R A +
Sbjct: 478 VDITTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE- 509
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
+ +LR V KET S GI N +LAK+A KPA Q + +V +
Sbjct: 510 -------VADDLRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDYIG 562
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+L ++ + +G LGT L++ LGV V D+ + + D+L S G TG +W ARGI
Sbjct: 563 NLTVQDLPGVGYSLGTKLED-LGVKIVKDVRELTRDRLTTSLGPKTGIKIWEYARGIDRT 621
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV +L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 622 EVGNEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 673
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 176/385 (45%), Gaps = 85/385 (22%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARN 61
+S+ R I H+D+D FY VEQ P+L+G P AV GG G++ A YEAR
Sbjct: 2 ESAPLRKIIHIDMDAFYASVEQLDNPELKGKPIAV-------GGSEVRGVVSAASYEARK 54
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASID 120
YGV+ +M G +A +CP++ V+ R Y+ ++ +I L E S+D
Sbjct: 55 YGVRSAMSGVQAARLCPELTFVRPRFDR-------YKEISKQIRAIFLEYTDLVEPLSLD 107
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
E YLD+T E+K GN S
Sbjct: 108 EAYLDVT------------------------------ENKKGNPS--------------- 122
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
LI E+R ++ ++T T SAGI+ NK +AK+AS NKP Q TV V+
Sbjct: 123 -------ATLIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEA 175
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
++ L +KK + GK+ +LG+ T DL + + L++ +G N+G +N++RGI
Sbjct: 176 FIEVLDVKKFYGI-GKVTAEKMYQLGIYTGLDLKNKTLEYLEQHFG-NSGQAFYNLSRGI 233
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
S +V+ KS G+ ++F L + ++ L + E+ R +++ K T
Sbjct: 234 SYSQVKPNRQMKSIGAERTF--NENLSSEIYMEERLENIASEIERR----IKKYKISGKT 287
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCP 385
+TL K SD ++ SK+ P
Sbjct: 288 ITL-----KIKYSDFTQQTRSKTLP 307
>gi|335356977|ref|ZP_08548847.1| DNA polymerase IV [Lactobacillus animalis KCTC 3501]
Length = 360
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 160/362 (44%), Gaps = 69/362 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSMR 69
R I HVD+DCFY +E R +PKLR P + + GG G++A Y+AR +G+ +M
Sbjct: 4 RDIIHVDMDCFYASIEMRDEPKLRDKPVVIARDPRKTGGHGVVATANYQARAFGIHSAMN 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 128
+A ++CP+ V + YR ++ +I A E + DE YLD+T
Sbjct: 64 AQQALKLCPKAVFVT-------PNFEKYRKVSRQIHAIFAEFSDLVEPIAFDEAYLDIT- 115
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
D++ L S +L HR
Sbjct: 116 ----------------ADKQKLGSAVL----------------------TAHR------- 130
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
L+ ++ ET+ TCS G+++NK LAKLAS KP T V VK L LPI+
Sbjct: 131 ------LQQRIYDETQLTCSIGVSYNKFLAKLASDFCKPVGMTVVRPEEVKAFLFPLPIE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K + +G K + + LG+ DL SE L + +G GT L+ RGI V+ R
Sbjct: 185 KFRGVGKKTAPKM-HALGIEKGEDLYAKSERYLNKHFG-KIGTVLYQQVRGIDERPVEVR 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
KS G+ ++F P L + A V QL L++ L + + K + L L ++F
Sbjct: 243 -ERKSIGTERTFIRP--LVSEAQVNDEFRQLATRLAKELNNKQKHGKTL--VLKLRTASF 297
Query: 369 KS 370
++
Sbjct: 298 ET 299
>gi|367021894|ref|XP_003660232.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
gi|347007499|gb|AEO54987.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
Length = 577
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 148/328 (45%), Gaps = 44/328 (13%)
Query: 72 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 108
EAK++CP I V +A K L YR ++ +++
Sbjct: 6 EAKKLCPNIINQHVATWREGEDKWAYRPDSAENIATDKVSLDPYRLESRKIFAVIKEILP 65
Query: 109 ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLD-----EVDEEALKSHILGLESK--- 160
+ + E+A IDE++LDL+ A+L E PE + E I L+ +
Sbjct: 66 SNLQKVEKAGIDEMFLDLSAHVHALLLERFPELASGPPKGDPSEPLPMPPISALDWQADA 125
Query: 161 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
D +D A ++ D D D +V +R + + +TC+AGIA NK+L+
Sbjct: 126 LVDLDDENAELE------DPDWDDVAFCVASEVVRNVRAAIRDKLRYTCAAGIARNKLLS 179
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL S KP QQT + +V+ L K + LGGKLG + E G +V +LL S
Sbjct: 180 KLGSAHKKPNQQTVIRNRAVRQFLSGFKFTKFRNLGGKLGEQVTREFGSESVPELLSVSV 239
Query: 279 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLN 337
++L+ G TG W++N RGI EV R KS S KSF PG + TV WL
Sbjct: 240 EQLKLKLGDETGVWVYNTLRGIDTSEVNPRTQIKSMFSAKSFRPG---ISTVEQATKWLR 296
Query: 338 QLCEELSERLCSD-LEQNKRIAHTLTLH 364
++ RL + + +NKR T+ LH
Sbjct: 297 IFVADIFARLVEEGVLENKRRPRTINLH 324
>gi|424150956|ref|ZP_17882245.1| DNA polymerase IV [Escherichia coli PA24]
gi|424535976|ref|ZP_17979270.1| DNA polymerase IV [Escherichia coli EC4013]
gi|390734600|gb|EIO06094.1| DNA polymerase IV [Escherichia coli PA24]
gi|390877299|gb|EIP38236.1| DNA polymerase IV [Escherichia coli EC4013]
Length = 351
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 151/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ V + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------VEDIHHWSE--CEAIIERLYPELERR 273
>gi|424817372|ref|ZP_18242523.1| DNA polymerase IV [Escherichia fergusonii ECD227]
gi|325498392|gb|EGC96251.1| DNA polymerase IV [Escherichia fergusonii ECD227]
Length = 351
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPTEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|422804340|ref|ZP_16852772.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
gi|324114892|gb|EGC08858.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
Length = 351
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432356608|ref|ZP_19599855.1| DNA polymerase IV [Escherichia coli KTE4]
gi|430879418|gb|ELC02749.1| DNA polymerase IV [Escherichia coli KTE4]
Length = 351
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PSV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300929520|ref|ZP_07144986.1| DNA polymerase IV, partial [Escherichia coli MS 187-1]
gi|300462519|gb|EFK26012.1| DNA polymerase IV [Escherichia coli MS 187-1]
Length = 328
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|194432752|ref|ZP_03065037.1| DNA polymerase IV [Shigella dysenteriae 1012]
gi|194419014|gb|EDX35098.1| DNA polymerase IV [Shigella dysenteriae 1012]
Length = 350
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 150/342 (43%), Gaps = 73/342 (21%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 3 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 61
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 LKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 113
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
C A LI
Sbjct: 114 -----------------------------------------CHGSA----------TLIA 122
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 QEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 182
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ + E+G+ T GD+ K L + +G G LW ++GI +V + L K
Sbjct: 183 V-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRK 240
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
S G ++ + HW CE + ERL +LE+
Sbjct: 241 SVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|395517555|ref|XP_003762941.1| PREDICTED: DNA polymerase iota-like, partial [Sarcophilus harrisii]
Length = 338
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 140/294 (47%), Gaps = 32/294 (10%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ R+I HVDLDCFY QVE P+L+G P V Q ++ YEAR GVK+
Sbjct: 62 SASYRVIVHVDLDCFYAQVEMISHPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKL 116
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++D+
Sbjct: 117 MSVRDAKEKCPQLVLVN------GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDI 170
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T E L + D+ A+ H+ +S + ND L
Sbjct: 171 TQTVEKRLHQL---QSDDYSVVAVCGHVYNNQSVNLNDILHV---------------RLL 212
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
G I E+R + + T AG+A NK+L+KL SG KP QQT + S + L+ SL
Sbjct: 213 IGSQIAAEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLIGSLD 272
Query: 247 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
IK+M +G K L++ LG+ +V DL FS + L++ G + + ++ G
Sbjct: 273 HIKQMPGIGYKTTKRLES-LGINSVHDLQIFSPEILEKELGISVAQRIQKLSFG 325
>gi|422373049|ref|ZP_16453380.1| DNA polymerase IV [Escherichia coli MS 60-1]
gi|324015566|gb|EGB84785.1| DNA polymerase IV [Escherichia coli MS 60-1]
Length = 351
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|340714323|ref|XP_003395679.1| PREDICTED: DNA polymerase iota-like isoform 1 [Bombus terrestris]
gi|340714325|ref|XP_003395680.1| PREDICTED: DNA polymerase iota-like isoform 2 [Bombus terrestris]
Length = 575
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 171/379 (45%), Gaps = 38/379 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY Q+E + P+L G P V Q ++ Y AR +G+K+ M
Sbjct: 24 RTIIHIDVDCFYAQIEMLRHPELEGKPLGVQQ-----KSIVVTSNYLAREHGIKKCMSVQ 78
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA ++CP++ LV DL++YR+ ++V+ IL + ER +D+ ++D+T
Sbjct: 79 EALQLCPELVLV------NGEDLTNYRHYSAKVLEILHQFTPLVERLGLDDNFMDVTSIV 132
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV--KEWLCRCDADHRDKLLACG 188
+ + L+ L + +D N E C C R L
Sbjct: 133 QKYMNSGNNSELN-----------LSINMEDENPVGKVFGPSEEECPCGCHAR---LIIA 178
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PI 247
I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QT V S L ++ +
Sbjct: 179 SKIAAEIRERIYKDLHITCSAGIAHNKLLAKLVGSLHKPNHQTLVFPCSAPMFLSTIGSV 238
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G K L + + TV DL K + L+ G + L + A GI V+
Sbjct: 239 SKIPGVGQKTAQLLISN-NIKTVDDLRKTPLETLEMKIGIDLARKLKDNAEGIDETVVKP 297
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+S G F +++ VA V+ L L L+E D IA LT+
Sbjct: 298 TGKRQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPIAMRLTVRKHD 352
Query: 368 FKSSDSDSRKKFPSKSCPL 386
F + S R+ ++ C L
Sbjct: 353 FNKTTSGKRE---TRQCAL 368
>gi|75756001|gb|ABA27055.1| TO87b-2 [Taraxacum officinale]
Length = 95
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 74/102 (72%), Gaps = 7/102 (6%)
Query: 344 SERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 403
SERL +D+E NKRIAHTLTLH +A+K D D+ KKFPSKSCPLRYG K+ ED NLF
Sbjct: 1 SERLHTDMETNKRIAHTLTLHVTAYKCGDRDTDKKFPSKSCPLRYGAGKVLEDAVNLFHC 60
Query: 404 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS 445
GLRE++ Q S GWRIT LSVSASKIV + SGTCS
Sbjct: 61 GLREYMNH-----QSS--GGWRITGLSVSASKIVDIPSGTCS 95
>gi|432439586|ref|ZP_19681949.1| DNA polymerase IV [Escherichia coli KTE189]
gi|432444710|ref|ZP_19687019.1| DNA polymerase IV [Escherichia coli KTE191]
gi|433012430|ref|ZP_20200815.1| DNA polymerase IV [Escherichia coli KTE104]
gi|433021974|ref|ZP_20210004.1| DNA polymerase IV [Escherichia coli KTE106]
gi|433325955|ref|ZP_20402923.1| DNA polymerase IV [Escherichia coli J96]
gi|430969396|gb|ELC86500.1| DNA polymerase IV [Escherichia coli KTE189]
gi|430976085|gb|ELC92960.1| DNA polymerase IV [Escherichia coli KTE191]
gi|431536262|gb|ELI12591.1| DNA polymerase IV [Escherichia coli KTE104]
gi|431541300|gb|ELI16740.1| DNA polymerase IV [Escherichia coli KTE106]
gi|432345767|gb|ELL40260.1| DNA polymerase IV [Escherichia coli J96]
Length = 351
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 138/301 (45%), Gaps = 68/301 (22%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKR 66
S +R I HVD+D FY VEQR P LRGLP V W+G + A YEAR YGV
Sbjct: 3 SSSRKIVHVDMDAFYASVEQRDNPALRGLPVVVA----WEGPRSVVCAASYEARRYGVHS 58
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLD 125
+M A+ +CP + V VP D + YR+ +V I AR E S+DE YLD
Sbjct: 59 AMSVARAQRLCP--DAVYVP-----PDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLD 111
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T V+++ L S D
Sbjct: 112 VT-----------------VNKQGLPS---------ATD--------------------- 124
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
+ +R ++L+ET T SAG+A NK LAK+AS +KP + + V L L
Sbjct: 125 -----VARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKPAQVLAFLQPL 179
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P++K+ +G + L+ LGV TVGDL + + +L+ +G G L +++GI EV
Sbjct: 180 PVRKVPGVGKVMQARLE-ALGVHTVGDLARHTAVELEHHFG-RYGIRLHELSQGIDRREV 237
Query: 306 Q 306
Q
Sbjct: 238 Q 238
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 162/359 (45%), Gaps = 80/359 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVK 65
+R I H+D+D F+ VEQR P LRG P AV GGG + A YEAR YGV+
Sbjct: 6 SRKIIHIDMDAFFASVEQRDDPTLRGKPVAV-------GGGEARGVVAAASYEAREYGVR 58
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYL 124
+M AK+ CP +L+ VP Y++ +++ +I A+ E S+DE YL
Sbjct: 59 SAMASVAAKKRCP--DLIFVP-----PRFDVYKSVSNQIRNIFAQYTHLIEPLSLDEAYL 111
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+TD ++ G+ES
Sbjct: 112 DVTD------------------------NLKGIES------------------------- 122
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
I E+R ++LKET T SAG+++NK +AKLAS NKP Q +P S + +
Sbjct: 123 ---ATQIAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIPPKSGEQFVAG 179
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPI++ +G ++ LG+ T DL K L++++G N+ + + ARG
Sbjct: 180 LPIRRFYGVGPVTAKKMER-LGILTGADLKKADLSWLRQNFG-NSADYYYAAARGKDDRI 237
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
VQ + KS G +++ K + + L + E+L L +E+ + HT+ L
Sbjct: 238 VQPNRIRKSVGVERTYS-----KDLFEKEEILTE-TEKLITLLWERIERANAVGHTIVL 290
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 132/306 (43%), Gaps = 66/306 (21%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARN 61
+RP S R I H+D+D FY VE R+QP L+GLP V W+G + A YEAR
Sbjct: 26 SRPSSMSQRKIIHIDMDAFYASVELREQPHLKGLPVVVA----WEGARSVICAASYEARQ 81
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDE 121
+G+ +M AK +CPQ V VP YR +++ ++ R
Sbjct: 82 FGLHSAMSVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR----------- 123
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
Y DL + P SLDE D H
Sbjct: 124 -YTDLIE----------PLSLDE-----------------------------AYLDVTHN 143
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
K + + E+R + ET T SAGIA NK LAK+AS KP Q +P V
Sbjct: 144 FKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAF 203
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L+++ARG
Sbjct: 204 LETLPLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTD 261
Query: 302 GEEVQA 307
V+A
Sbjct: 262 ERPVKA 267
>gi|312378180|gb|EFR24822.1| hypothetical protein AND_10339 [Anopheles darlingi]
Length = 825
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 44/382 (11%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H+D+D FY QVE+ P L+ P AV Q ++ Y AR+ G+++
Sbjct: 86 RVIIHIDMDYFYAQVEEVLNPSLKDRPFAVKQR-----FCVVTSNYIARDLGIRKLQPVK 140
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA +CP++ LV DL+ Y+ + I+ R E+ +DE YLD+T
Sbjct: 141 EALAICPELVLV------NGEDLTKYKAMSQRINEIMHRFTPHVEKLGLDENYLDVT--- 191
Query: 131 EAMLAETPPESLDEVDEEALKSH-------ILGL---ESKDGNDSKATVKEWL---CRCD 177
E E L+++D E+ S+ ++GL +D S+ + +E C C
Sbjct: 192 -----ELTAERLEQLDGESSISNANVQTERVVGLIHPPPEDRQRSEYSDRELFRSCCLCG 246
Query: 178 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 237
D R L I E+R + +E C AGIAHNK+LAKL MNKP +QT + ++
Sbjct: 247 CDRR---LILATHIAQEIRECIFRELGLRCCAGIAHNKLLAKLVGAMNKPNKQTVLLPTA 303
Query: 238 VKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 296
+ SL ++ + +G K +L VTTV DL + ++L G L I
Sbjct: 304 SSSFVASLGCVRSLTGIGEKTAQTLAECCNVTTVTDLQQIELERLARHVGHEQAVRLKQI 363
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
A G V+ PKS G S P SV+ + L RL ++ ++ R
Sbjct: 364 ALGRDDTPVRQTGKPKSVGLEDSCPA-------ISVRADAEEKFRHLLVRLVKNIAEDGR 416
Query: 357 IAHTLTLHASAFKSSDSDSRKK 378
+ + + F S+ + ++
Sbjct: 417 VPIAIKVTVRKFDSTKRTTHRE 438
>gi|91209319|ref|YP_539305.1| DNA polymerase IV [Escherichia coli UTI89]
gi|110640467|ref|YP_668195.1| DNA polymerase IV [Escherichia coli 536]
gi|117622533|ref|YP_851446.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|191171433|ref|ZP_03032982.1| DNA polymerase IV [Escherichia coli F11]
gi|218557187|ref|YP_002390100.1| DNA polymerase IV [Escherichia coli S88]
gi|237707750|ref|ZP_04538231.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|331645437|ref|ZP_08346541.1| DNA polymerase IV [Escherichia coli M605]
gi|386597994|ref|YP_006099500.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|386605783|ref|YP_006112083.1| DNA polymerase IV [Escherichia coli UM146]
gi|416334115|ref|ZP_11671134.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|417082657|ref|ZP_11950885.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|417287701|ref|ZP_12074987.1| DNA polymerase IV [Escherichia coli TW07793]
gi|417660855|ref|ZP_12310436.1| DNA polymerase 4 [Escherichia coli AA86]
gi|419915704|ref|ZP_14434064.1| DNA polymerase IV [Escherichia coli KD1]
gi|419945739|ref|ZP_14462174.1| DNA polymerase IV [Escherichia coli HM605]
gi|422358413|ref|ZP_16439072.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|422748672|ref|ZP_16802585.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|422752926|ref|ZP_16806753.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|422838798|ref|ZP_16886770.1| DNA polymerase IV [Escherichia coli H397]
gi|425298462|ref|ZP_18688512.1| DNA polymerase IV [Escherichia coli 07798]
gi|432361031|ref|ZP_19604228.1| DNA polymerase IV [Escherichia coli KTE5]
gi|432405138|ref|ZP_19647861.1| DNA polymerase IV [Escherichia coli KTE28]
gi|432464294|ref|ZP_19706402.1| DNA polymerase IV [Escherichia coli KTE205]
gi|432469580|ref|ZP_19711635.1| DNA polymerase IV [Escherichia coli KTE206]
gi|432572272|ref|ZP_19808764.1| DNA polymerase IV [Escherichia coli KTE55]
gi|432582388|ref|ZP_19818798.1| DNA polymerase IV [Escherichia coli KTE57]
gi|432586577|ref|ZP_19822949.1| DNA polymerase IV [Escherichia coli KTE58]
gi|432596147|ref|ZP_19832436.1| DNA polymerase IV [Escherichia coli KTE62]
gi|432711936|ref|ZP_19946988.1| DNA polymerase IV [Escherichia coli KTE8]
gi|432753075|ref|ZP_19987644.1| DNA polymerase IV [Escherichia coli KTE22]
gi|432777132|ref|ZP_20011386.1| DNA polymerase IV [Escherichia coli KTE59]
gi|432785925|ref|ZP_20020093.1| DNA polymerase IV [Escherichia coli KTE65]
gi|432800550|ref|ZP_20034541.1| DNA polymerase IV [Escherichia coli KTE84]
gi|432819598|ref|ZP_20053312.1| DNA polymerase IV [Escherichia coli KTE118]
gi|432825726|ref|ZP_20059383.1| DNA polymerase IV [Escherichia coli KTE123]
gi|432892907|ref|ZP_20105012.1| DNA polymerase IV [Escherichia coli KTE165]
gi|433003791|ref|ZP_20192229.1| DNA polymerase IV [Escherichia coli KTE227]
gi|433010996|ref|ZP_20199401.1| DNA polymerase IV [Escherichia coli KTE229]
gi|433071227|ref|ZP_20257936.1| DNA polymerase IV [Escherichia coli KTE129]
gi|433076410|ref|ZP_20262986.1| DNA polymerase IV [Escherichia coli KTE131]
gi|433118779|ref|ZP_20304496.1| DNA polymerase IV [Escherichia coli KTE157]
gi|433152409|ref|ZP_20337379.1| DNA polymerase IV [Escherichia coli KTE176]
gi|433162032|ref|ZP_20346800.1| DNA polymerase IV [Escherichia coli KTE179]
gi|433166968|ref|ZP_20351652.1| DNA polymerase IV [Escherichia coli KTE180]
gi|433181738|ref|ZP_20366046.1| DNA polymerase IV [Escherichia coli KTE85]
gi|122424895|sp|Q1RFU0.1|DPO4_ECOUT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122958567|sp|Q0TL85.1|DPO4_ECOL5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027664|sp|A1A7U2.1|DPO4_ECOK1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|91070893|gb|ABE05774.1| damage-inducible protein P; DNA polymerase IV [Escherichia coli
UTI89]
gi|110342059|gb|ABG68296.1| DNA-damage-inducible protein P (DinP) [Escherichia coli 536]
gi|115511657|gb|ABI99731.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|190908367|gb|EDV67957.1| DNA polymerase IV [Escherichia coli F11]
gi|218363956|emb|CAR01621.1| DNA polymerase IV [Escherichia coli S88]
gi|226898960|gb|EEH85219.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|294491183|gb|ADE89939.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|307628267|gb|ADN72571.1| DNA polymerase IV [Escherichia coli UM146]
gi|315287741|gb|EFU47144.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|320197284|gb|EFW71900.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|323953127|gb|EGB48995.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|323958691|gb|EGB54392.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|330910073|gb|EGH38583.1| DNA polymerase 4 [Escherichia coli AA86]
gi|331045599|gb|EGI17725.1| DNA polymerase IV [Escherichia coli M605]
gi|355353195|gb|EHG02365.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|371611722|gb|EHO00242.1| DNA polymerase IV [Escherichia coli H397]
gi|386248486|gb|EII94658.1| DNA polymerase IV [Escherichia coli TW07793]
gi|388383451|gb|EIL45222.1| DNA polymerase IV [Escherichia coli KD1]
gi|388414873|gb|EIL74817.1| DNA polymerase IV [Escherichia coli HM605]
gi|408221465|gb|EKI45398.1| DNA polymerase IV [Escherichia coli 07798]
gi|430891266|gb|ELC13802.1| DNA polymerase IV [Escherichia coli KTE5]
gi|430932634|gb|ELC53053.1| DNA polymerase IV [Escherichia coli KTE28]
gi|430997045|gb|ELD13312.1| DNA polymerase IV [Escherichia coli KTE205]
gi|431000294|gb|ELD16356.1| DNA polymerase IV [Escherichia coli KTE206]
gi|431111366|gb|ELE15270.1| DNA polymerase IV [Escherichia coli KTE55]
gi|431119404|gb|ELE22403.1| DNA polymerase IV [Escherichia coli KTE57]
gi|431123857|gb|ELE26511.1| DNA polymerase IV [Escherichia coli KTE58]
gi|431133814|gb|ELE35780.1| DNA polymerase IV [Escherichia coli KTE62]
gi|431259451|gb|ELF51814.1| DNA polymerase IV [Escherichia coli KTE8]
gi|431305856|gb|ELF94173.1| DNA polymerase IV [Escherichia coli KTE22]
gi|431330706|gb|ELG17970.1| DNA polymerase IV [Escherichia coli KTE59]
gi|431341856|gb|ELG28852.1| DNA polymerase IV [Escherichia coli KTE65]
gi|431351446|gb|ELG38233.1| DNA polymerase IV [Escherichia coli KTE84]
gi|431370600|gb|ELG56393.1| DNA polymerase IV [Escherichia coli KTE118]
gi|431375110|gb|ELG60454.1| DNA polymerase IV [Escherichia coli KTE123]
gi|431425359|gb|ELH07429.1| DNA polymerase IV [Escherichia coli KTE165]
gi|431517112|gb|ELH94634.1| DNA polymerase IV [Escherichia coli KTE227]
gi|431519208|gb|ELH96660.1| DNA polymerase IV [Escherichia coli KTE229]
gi|431594676|gb|ELI64955.1| DNA polymerase IV [Escherichia coli KTE129]
gi|431602470|gb|ELI71903.1| DNA polymerase IV [Escherichia coli KTE131]
gi|431649763|gb|ELJ17105.1| DNA polymerase IV [Escherichia coli KTE157]
gi|431678465|gb|ELJ44461.1| DNA polymerase IV [Escherichia coli KTE176]
gi|431692822|gb|ELJ58245.1| DNA polymerase IV [Escherichia coli KTE179]
gi|431694762|gb|ELJ60107.1| DNA polymerase IV [Escherichia coli KTE180]
gi|431712483|gb|ELJ76777.1| DNA polymerase IV [Escherichia coli KTE85]
Length = 351
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432379911|ref|ZP_19622875.1| DNA polymerase IV [Escherichia coli KTE15]
gi|432385678|ref|ZP_19628579.1| DNA polymerase IV [Escherichia coli KTE16]
gi|432512492|ref|ZP_19749736.1| DNA polymerase IV [Escherichia coli KTE224]
gi|432609957|ref|ZP_19846131.1| DNA polymerase IV [Escherichia coli KTE72]
gi|432644660|ref|ZP_19880465.1| DNA polymerase IV [Escherichia coli KTE86]
gi|432654294|ref|ZP_19890014.1| DNA polymerase IV [Escherichia coli KTE93]
gi|432697601|ref|ZP_19932774.1| DNA polymerase IV [Escherichia coli KTE169]
gi|432744220|ref|ZP_19978926.1| DNA polymerase IV [Escherichia coli KTE43]
gi|432902591|ref|ZP_20112298.1| DNA polymerase IV [Escherichia coli KTE194]
gi|432942026|ref|ZP_20139442.1| DNA polymerase IV [Escherichia coli KTE183]
gi|432983976|ref|ZP_20172716.1| DNA polymerase IV [Escherichia coli KTE215]
gi|433037183|ref|ZP_20224807.1| DNA polymerase IV [Escherichia coli KTE113]
gi|433099795|ref|ZP_20285912.1| DNA polymerase IV [Escherichia coli KTE145]
gi|433142794|ref|ZP_20327977.1| DNA polymerase IV [Escherichia coli KTE168]
gi|433186970|ref|ZP_20371107.1| DNA polymerase IV [Escherichia coli KTE88]
gi|430910511|gb|ELC31821.1| DNA polymerase IV [Escherichia coli KTE16]
gi|430911890|gb|ELC33141.1| DNA polymerase IV [Escherichia coli KTE15]
gi|431045079|gb|ELD55328.1| DNA polymerase IV [Escherichia coli KTE224]
gi|431151780|gb|ELE52791.1| DNA polymerase IV [Escherichia coli KTE72]
gi|431184873|gb|ELE84616.1| DNA polymerase IV [Escherichia coli KTE86]
gi|431195720|gb|ELE94684.1| DNA polymerase IV [Escherichia coli KTE93]
gi|431247268|gb|ELF41506.1| DNA polymerase IV [Escherichia coli KTE169]
gi|431296065|gb|ELF85793.1| DNA polymerase IV [Escherichia coli KTE43]
gi|431437832|gb|ELH19339.1| DNA polymerase IV [Escherichia coli KTE194]
gi|431456001|gb|ELH36350.1| DNA polymerase IV [Escherichia coli KTE183]
gi|431506412|gb|ELH85008.1| DNA polymerase IV [Escherichia coli KTE215]
gi|431556226|gb|ELI30015.1| DNA polymerase IV [Escherichia coli KTE113]
gi|431623391|gb|ELI92062.1| DNA polymerase IV [Escherichia coli KTE145]
gi|431667270|gb|ELJ33860.1| DNA polymerase IV [Escherichia coli KTE168]
gi|431710438|gb|ELJ74814.1| DNA polymerase IV [Escherichia coli KTE88]
Length = 351
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432858656|ref|ZP_20085059.1| DNA polymerase IV [Escherichia coli KTE146]
gi|431408412|gb|ELG91598.1| DNA polymerase IV [Escherichia coli KTE146]
Length = 351
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 173/384 (45%), Gaps = 93/384 (24%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARNYGVKR 66
R I H+D+D FY VEQ P+LRG P AV GG G++ A YEAR +GV+
Sbjct: 8 RKIIHIDMDAFYASVEQMDNPELRGKPVAV-------GGSENRGVVSAASYEARKFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLD 125
++ G AK+ CP+I V+ R Y+ S++ I E S+DE YLD
Sbjct: 61 AISGVLAKKYCPEIIFVRPRFDR-------YKEISSKIHKIFHEYTDLVEPLSLDEAYLD 113
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T ++K GN S +
Sbjct: 114 VT------------------------------KNKKGNPSAS------------------ 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
L+ E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V+ L+ L
Sbjct: 126 ----LLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFLEDL 181
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
PI+K + GK+ T +LG+ T DL S + L++ +G +G + +++ RGI EV
Sbjct: 182 PIRKFYGV-GKVTTEKMYQLGIFTGTDLKSKSLEFLEKHFG-KSGAFYYHVVRGIHNSEV 239
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRI---AHTL 361
++ + KS + +F ++S + QL ER+ S LE+ KR T+
Sbjct: 240 KSSRIAKSVAAEHTFD-----VNLSSEIFMMEQL-----ERIASSLEKRLKRYNVSGKTI 289
Query: 362 TLHASAFKSSDSDSRKKFPSKSCP 385
TL K SD ++ SK+ P
Sbjct: 290 TL-----KIKYSDFSQQTRSKTLP 308
>gi|218550064|ref|YP_002383855.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|416895677|ref|ZP_11925561.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|417114256|ref|ZP_11965634.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|422782942|ref|ZP_16835727.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|422802135|ref|ZP_16850629.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|432430401|ref|ZP_19672847.1| DNA polymerase IV [Escherichia coli KTE187]
gi|432600770|ref|ZP_19837026.1| DNA polymerase IV [Escherichia coli KTE66]
gi|432842572|ref|ZP_20075994.1| DNA polymerase IV [Escherichia coli KTE141]
gi|432848028|ref|ZP_20079900.1| DNA polymerase IV [Escherichia coli KTE144]
gi|433206413|ref|ZP_20390118.1| DNA polymerase IV [Escherichia coli KTE97]
gi|218357605|emb|CAQ90244.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|323965213|gb|EGB60671.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|323976250|gb|EGB71343.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|327254575|gb|EGE66191.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|386141860|gb|EIG83006.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|430956759|gb|ELC75429.1| DNA polymerase IV [Escherichia coli KTE187]
gi|431144809|gb|ELE46503.1| DNA polymerase IV [Escherichia coli KTE66]
gi|431397599|gb|ELG81045.1| DNA polymerase IV [Escherichia coli KTE141]
gi|431402377|gb|ELG85689.1| DNA polymerase IV [Escherichia coli KTE144]
gi|431733416|gb|ELJ96852.1| DNA polymerase IV [Escherichia coli KTE97]
Length = 351
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300934932|ref|ZP_07149986.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|432678680|ref|ZP_19914084.1| DNA polymerase IV [Escherichia coli KTE143]
gi|300459838|gb|EFK23331.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|431225324|gb|ELF22528.1| DNA polymerase IV [Escherichia coli KTE143]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|170679693|ref|YP_001742392.1| DNA polymerase IV [Escherichia coli SMS-3-5]
gi|170517411|gb|ACB15589.1| DNA polymerase IV [Escherichia coli SMS-3-5]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|218688123|ref|YP_002396335.1| DNA polymerase IV [Escherichia coli ED1a]
gi|218698823|ref|YP_002406452.1| DNA polymerase IV [Escherichia coli IAI39]
gi|222155074|ref|YP_002555213.1| DNA polymerase IV [Escherichia coli LF82]
gi|386622636|ref|YP_006142364.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|387615594|ref|YP_006118616.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|422831010|ref|ZP_16879161.1| DNA polymerase IV [Escherichia coli B093]
gi|433196857|ref|ZP_20380789.1| DNA polymerase IV [Escherichia coli KTE94]
gi|218368809|emb|CAR16557.1| DNA polymerase IV [Escherichia coli IAI39]
gi|218425687|emb|CAR06479.1| DNA polymerase IV [Escherichia coli ED1a]
gi|222032079|emb|CAP74818.1| DNA polymerase IV [Escherichia coli LF82]
gi|312944855|gb|ADR25682.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|349736374|gb|AEQ11080.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|371603091|gb|EHN91770.1| DNA polymerase IV [Escherichia coli B093]
gi|431726006|gb|ELJ89834.1| DNA polymerase IV [Escherichia coli KTE94]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 151/342 (44%), Gaps = 79/342 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMRG 70
R I HVD+D F+ VEQR P+LRG P V+ + G G++A YEAR +G+ +M
Sbjct: 34 RKIIHVDMDAFFAAVEQRDHPELRGQP--VIVGGDPGGRGVVATCSYEARRFGIHSAMTA 91
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-----ERASIDEVYLD 125
A+ +CPQ + + + +YR A V+ IL RC E S+DE +LD
Sbjct: 92 ARARSLCPQAIFL-------RPRMEAYREASRLVMGIL----RCYTPLVEPLSLDEAFLD 140
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
T A D +L
Sbjct: 141 ATAATA--------------------------------------------------DGIL 150
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
A V I E+R ++ +ET T SAG+++NK+LAKLAS KP VP L L
Sbjct: 151 A--VQIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPPERGLTFLAPL 208
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P+ K+ +G L + +G+ TV DL S + L +G TG W + IARGI V
Sbjct: 209 PVSKLHGVGPATVKKL-SSMGIHTVLDLRNMSREALIAQFG-KTGLWFYEIARGIDLRPV 266
Query: 306 QARLLPKSHGSGKSFP----GPRALKTVASVQHWLNQLCEEL 343
Q KS G+ ++FP P+ + +A++Q Q+ L
Sbjct: 267 QPSRQRKSVGTERTFPKNLADPKVM--LATLQQMAGQVAARL 306
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 132/302 (43%), Gaps = 68/302 (22%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVK 65
S +R I H+D+D FY VEQR P LRG P V W G + A YEAR +GV
Sbjct: 2 SDASRKIVHIDMDAFYASVEQRDNPDLRGQPVVVA----WTGPRSVVCAASYEARRFGVH 57
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYL 124
+M A+ +CPQ V VP D + YR ++ I AR E S+DE YL
Sbjct: 58 SAMSAVRAQRLCPQA--VYVP-----PDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYL 110
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T + LGL S
Sbjct: 111 DVT------------------------VNKLGLPS------------------------- 121
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ +R Q+ ET T SAG+A NK LAK+AS NKP Q + + V L
Sbjct: 122 ---ATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIRPTRVLEFLQP 178
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP++K+ + GK+ + +LG+ TVGDL +L+ +G G L+ +ARGI E
Sbjct: 179 LPVRKVPGV-GKVTQARLEQLGIQTVGDLATHGVQELEHYFG-RYGRRLYELARGIDERE 236
Query: 305 VQ 306
VQ
Sbjct: 237 VQ 238
>gi|293408387|ref|ZP_06652226.1| DNA polymerase IV [Escherichia coli B354]
gi|291471565|gb|EFF14048.1| DNA polymerase IV [Escherichia coli B354]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|331671823|ref|ZP_08372619.1| DNA polymerase IV [Escherichia coli TA280]
gi|331070812|gb|EGI42171.1| DNA polymerase IV [Escherichia coli TA280]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 VALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432552289|ref|ZP_19789022.1| DNA polymerase IV [Escherichia coli KTE47]
gi|431087216|gb|ELD93215.1| DNA polymerase IV [Escherichia coli KTE47]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 178/405 (43%), Gaps = 75/405 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQ P LR P AV +E G + A YEAR +GVK +M
Sbjct: 8 RKIIHIDMDAFYASVEQLDNPDLRNKPVAVGGSSER--GVVSAASYEARKFGVKSAMSSV 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK CP + V KA Y+ S++ +I +L+ TD E
Sbjct: 66 IAKRNCPNLIFV-------KARFDRYKEISSQIRAI---------------FLEYTDLVE 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K + LI
Sbjct: 104 -------PLSLDE-----------------------------AYLDVTENKKGIPSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V+ L+ L I+K
Sbjct: 128 AQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVEEFLEQLQIRKFY 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ LG+ L SE+ L E++G +G + +N+ RGI EV+A +
Sbjct: 188 GV-GKVTAEKMYRLGIFKGIQLKDKSEEFLTENFG-KSGKYYYNVVRGIHNSEVKADRIR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS G+ ++F + +AS + ++ + E ++E + L+ +K T+TL K
Sbjct: 246 KSLGAERTFS-----ENIAS-EIFMMERLENIAEEIERRLKGSKVAGKTVTL-----KIK 294
Query: 372 DSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 414
SD + SK+ P + + DT LFQ ++ + G+
Sbjct: 295 YSDFTLQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLGI 339
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 158/363 (43%), Gaps = 80/363 (22%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARN 61
D +R I HVD+D FY VEQR P L+G AV GG G+I A YEAR
Sbjct: 2 DFDTSRKIIHVDMDAFYASVEQRDNPDLKGKAIAV-------GGSSDRGVISAASYEARK 54
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASID 120
+GV+ +M AK++CP++ V+ R Y+ +V +I E S+D
Sbjct: 55 FGVRSAMSSVVAKKLCPELIFVRHHFER-------YKEVSQQVRAIFFEYTDLVEPLSLD 107
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
E YLD+T +K GN S
Sbjct: 108 EAYLDVT------------------------------VNKKGNPS--------------- 122
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
LI E+R ++L++T T SAGI+ NK +AK+AS NKP Q TV + V
Sbjct: 123 -------ATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPTEVLD 175
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L++L IKK + GK+ LG+ T DL +E L E++G +G + I RGI
Sbjct: 176 FLEALDIKKFYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTENFG-KSGAHYYRIVRGI 233
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V K H + KS R + + ++ + +ELSE L L ++ T
Sbjct: 234 HHSAV------KPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAGKT 287
Query: 361 LTL 363
+TL
Sbjct: 288 ITL 290
>gi|301019021|ref|ZP_07183237.1| DNA polymerase IV [Escherichia coli MS 196-1]
gi|299882426|gb|EFI90637.1| DNA polymerase IV [Escherichia coli MS 196-1]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|16128217|ref|NP_414766.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|74310874|ref|YP_309293.1| DNA polymerase IV [Shigella sonnei Ss046]
gi|170021341|ref|YP_001726295.1| DNA polymerase IV [Escherichia coli ATCC 8739]
gi|170079858|ref|YP_001729178.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188492262|ref|ZP_02999532.1| DNA polymerase IV [Escherichia coli 53638]
gi|194438229|ref|ZP_03070321.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218552837|ref|YP_002385750.1| DNA polymerase IV [Escherichia coli IAI1]
gi|218693716|ref|YP_002401383.1| DNA polymerase IV [Escherichia coli 55989]
gi|238899621|ref|YP_002925417.1| DNA polymerase IV [Escherichia coli BW2952]
gi|251783788|ref|YP_002998092.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253774744|ref|YP_003037575.1| DNA polymerase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160345|ref|YP_003043453.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|254287148|ref|YP_003052896.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|300947288|ref|ZP_07161491.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|300955690|ref|ZP_07168040.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|301643542|ref|ZP_07243584.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|312970357|ref|ZP_07784538.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|331640760|ref|ZP_08341895.1| DNA polymerase IV [Escherichia coli H736]
gi|383176868|ref|YP_005454873.1| DNA polymerase IV [Shigella sonnei 53G]
gi|386279278|ref|ZP_10056964.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386596884|ref|YP_006093284.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|386612415|ref|YP_006132081.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|386703468|ref|YP_006167315.1| DNA polymerase IV [Escherichia coli P12b]
gi|387610725|ref|YP_006113841.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|387619993|ref|YP_006127620.1| DNA polymerase IV [Escherichia coli DH1]
gi|388476342|ref|YP_488526.1| DNA polymerase IV [Escherichia coli str. K-12 substr. W3110]
gi|404373579|ref|ZP_10978822.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|407467706|ref|YP_006785852.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483577|ref|YP_006780726.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484117|ref|YP_006771663.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414574461|ref|ZP_11431672.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|415777326|ref|ZP_11488578.1| DNA polymerase IV [Escherichia coli 3431]
gi|416262047|ref|ZP_11640622.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|417126868|ref|ZP_11974422.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|417135509|ref|ZP_11980294.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|417246600|ref|ZP_12039701.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|417274019|ref|ZP_12061363.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|417279671|ref|ZP_12066977.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|417293063|ref|ZP_12080343.1| DNA polymerase IV [Escherichia coli B41]
gi|417611291|ref|ZP_12261766.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|417616602|ref|ZP_12267038.1| DNA polymerase IV [Escherichia coli G58-1]
gi|417803595|ref|ZP_12450633.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|417836883|ref|ZP_12483129.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|417867906|ref|ZP_12512939.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|417946822|ref|ZP_12590031.1| DNA polymerase IV [Escherichia coli XH140A]
gi|417978142|ref|ZP_12618915.1| DNA polymerase IV [Escherichia coli XH001]
gi|418042361|ref|ZP_12680560.1| DNA polymerase IV [Escherichia coli W26]
gi|418261973|ref|ZP_12883684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|418959675|ref|ZP_13511572.1| DNA polymerase IV [Escherichia coli J53]
gi|419140734|ref|ZP_13685491.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|419152086|ref|ZP_13696674.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|419157543|ref|ZP_13702072.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|419162541|ref|ZP_13707021.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|419173609|ref|ZP_13717467.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|419368536|ref|ZP_13909667.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|419389670|ref|ZP_13930511.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|419394844|ref|ZP_13935629.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|419400199|ref|ZP_13940933.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|419405371|ref|ZP_13946075.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|419410862|ref|ZP_13951536.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|419806627|ref|ZP_14331726.1| DNA polymerase IV [Escherichia coli AI27]
gi|419811151|ref|ZP_14336028.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|419927843|ref|ZP_14445567.1| DNA polymerase IV [Escherichia coli 541-1]
gi|419942197|ref|ZP_14458821.1| DNA polymerase IV [Escherichia coli 75]
gi|420356882|ref|ZP_14857902.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|420361856|ref|ZP_14862784.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|420378556|ref|ZP_14878058.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|421776172|ref|ZP_16212778.1| DNA polymerase IV [Escherichia coli AD30]
gi|422764577|ref|ZP_16818325.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|422769504|ref|ZP_16823195.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|422776897|ref|ZP_16830550.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|422784882|ref|ZP_16837621.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|422791043|ref|ZP_16843746.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|422816251|ref|ZP_16864466.1| DNA polymerase IV [Escherichia coli M919]
gi|422990955|ref|ZP_16981726.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|422992894|ref|ZP_16983658.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|422998103|ref|ZP_16988859.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|423006588|ref|ZP_16997331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|423008209|ref|ZP_16998947.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|423022396|ref|ZP_17013099.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|423027550|ref|ZP_17018243.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|423033387|ref|ZP_17024071.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|423036253|ref|ZP_17026927.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041373|ref|ZP_17032040.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048059|ref|ZP_17038716.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423051643|ref|ZP_17040451.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058608|ref|ZP_17047404.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423701027|ref|ZP_17675486.1| DNA polymerase IV [Escherichia coli H730]
gi|425118330|ref|ZP_18520070.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|425270942|ref|ZP_18662457.1| DNA polymerase IV [Escherichia coli TW15901]
gi|425281616|ref|ZP_18672737.1| DNA polymerase IV [Escherichia coli TW00353]
gi|425286835|ref|ZP_18677773.1| DNA polymerase IV [Escherichia coli 3006]
gi|429722453|ref|ZP_19257351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774532|ref|ZP_19306535.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429779795|ref|ZP_19311748.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783847|ref|ZP_19315760.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429789185|ref|ZP_19321060.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429795415|ref|ZP_19327241.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429801341|ref|ZP_19333119.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429804973|ref|ZP_19336720.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429809784|ref|ZP_19341486.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429815544|ref|ZP_19347203.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429821132|ref|ZP_19352745.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429906805|ref|ZP_19372774.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911001|ref|ZP_19376957.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916840|ref|ZP_19382780.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921878|ref|ZP_19387799.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927696|ref|ZP_19393602.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931628|ref|ZP_19397523.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933230|ref|ZP_19399120.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938884|ref|ZP_19404758.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946527|ref|ZP_19412382.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949176|ref|ZP_19415024.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957442|ref|ZP_19423271.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|432368234|ref|ZP_19611340.1| DNA polymerase IV [Escherichia coli KTE10]
gi|432415204|ref|ZP_19657838.1| DNA polymerase IV [Escherichia coli KTE44]
gi|432483893|ref|ZP_19725821.1| DNA polymerase IV [Escherichia coli KTE212]
gi|432529562|ref|ZP_19766618.1| DNA polymerase IV [Escherichia coli KTE233]
gi|432562169|ref|ZP_19798801.1| DNA polymerase IV [Escherichia coli KTE51]
gi|432578942|ref|ZP_19815377.1| DNA polymerase IV [Escherichia coli KTE56]
gi|432625807|ref|ZP_19861795.1| DNA polymerase IV [Escherichia coli KTE77]
gi|432635595|ref|ZP_19871484.1| DNA polymerase IV [Escherichia coli KTE81]
gi|432659507|ref|ZP_19895170.1| DNA polymerase IV [Escherichia coli KTE111]
gi|432669117|ref|ZP_19904669.1| DNA polymerase IV [Escherichia coli KTE119]
gi|432684113|ref|ZP_19919435.1| DNA polymerase IV [Escherichia coli KTE156]
gi|432690117|ref|ZP_19925367.1| DNA polymerase IV [Escherichia coli KTE161]
gi|432702820|ref|ZP_19937951.1| DNA polymerase IV [Escherichia coli KTE171]
gi|432717260|ref|ZP_19952262.1| DNA polymerase IV [Escherichia coli KTE9]
gi|432735711|ref|ZP_19970503.1| DNA polymerase IV [Escherichia coli KTE42]
gi|432763540|ref|ZP_19997993.1| DNA polymerase IV [Escherichia coli KTE48]
gi|432830266|ref|ZP_20063875.1| DNA polymerase IV [Escherichia coli KTE135]
gi|432879528|ref|ZP_20096530.1| DNA polymerase IV [Escherichia coli KTE154]
gi|432944820|ref|ZP_20141225.1| DNA polymerase IV [Escherichia coli KTE196]
gi|432953143|ref|ZP_20145698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|433041743|ref|ZP_20229279.1| DNA polymerase IV [Escherichia coli KTE117]
gi|433046297|ref|ZP_20233738.1| DNA polymerase IV [Escherichia coli KTE120]
gi|433172011|ref|ZP_20356579.1| DNA polymerase IV [Escherichia coli KTE232]
gi|442594020|ref|ZP_21011944.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442600405|ref|ZP_21018082.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450238531|ref|ZP_21898924.1| DNA polymerase IV [Escherichia coli S17]
gi|2501652|sp|Q47155.1|DPO4_ECOLI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123617967|sp|Q3Z5A4.1|DPO4_SHISS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027665|sp|B1J100.1|DPO4_ECOLC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|984587|dbj|BAA07593.1| DinP [Escherichia coli W3110]
gi|1552799|gb|AAB08651.1| DinP [Escherichia coli]
gi|1786425|gb|AAC73335.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|4902967|dbj|BAA77901.1| DNA polymerase IV [Escherichia coli str. K12 substr. W3110]
gi|73854351|gb|AAZ87058.1| damage-inducible protein P [Shigella sonnei Ss046]
gi|169756269|gb|ACA78968.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739]
gi|169887693|gb|ACB01400.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188487461|gb|EDU62564.1| DNA polymerase IV [Escherichia coli 53638]
gi|194422893|gb|EDX38888.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218350448|emb|CAU96135.1| DNA polymerase IV [Escherichia coli 55989]
gi|218359605|emb|CAQ97146.1| DNA polymerase IV [Escherichia coli IAI1]
gi|238860838|gb|ACR62836.1| DNA polymerase IV [Escherichia coli BW2952]
gi|242376061|emb|CAQ30746.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253325788|gb|ACT30390.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972246|gb|ACT37917.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|253976455|gb|ACT42125.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|260450573|gb|ACX40995.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|300317441|gb|EFJ67225.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|300453089|gb|EFK16709.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|301078042|gb|EFK92848.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|309700461|emb|CBI99755.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|310337006|gb|EFQ02144.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|315134916|dbj|BAJ42075.1| DNA polymerase IV [Escherichia coli DH1]
gi|315616806|gb|EFU97423.1| DNA polymerase IV [Escherichia coli 3431]
gi|320176695|gb|EFW51732.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|323943351|gb|EGB39504.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|323945385|gb|EGB41439.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|323963542|gb|EGB59100.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|323972412|gb|EGB67619.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|324115582|gb|EGC09521.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|331037558|gb|EGI09778.1| DNA polymerase IV [Escherichia coli H736]
gi|332341584|gb|AEE54918.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|340730476|gb|EGR59807.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|340741871|gb|EGR76014.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|341921195|gb|EGT70797.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|342361447|gb|EGU25585.1| DNA polymerase IV [Escherichia coli XH140A]
gi|344192205|gb|EGV46302.1| DNA polymerase IV [Escherichia coli XH001]
gi|345366378|gb|EGW98469.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|345382492|gb|EGX13371.1| DNA polymerase IV [Escherichia coli G58-1]
gi|354858087|gb|EHF18538.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|354859941|gb|EHF20388.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|354866637|gb|EHF27060.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|354876971|gb|EHF37331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|354879280|gb|EHF39618.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|354883867|gb|EHF44181.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|354885668|gb|EHF45960.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|354888735|gb|EHF48989.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|354901336|gb|EHF61463.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905567|gb|EHF65650.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354908074|gb|EHF68130.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918546|gb|EHF78502.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354922234|gb|EHF82149.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|359331082|dbj|BAL37529.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MDS42]
gi|378000067|gb|EHV63141.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|378003670|gb|EHV66710.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|378014734|gb|EHV77632.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|378017007|gb|EHV79882.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|378038204|gb|EHW00721.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|378222886|gb|EHX83120.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|378244963|gb|EHY04902.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|378251696|gb|EHY11592.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|378252030|gb|EHY11924.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|378257760|gb|EHY17596.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|378261353|gb|EHY21147.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|383101636|gb|AFG39145.1| DNA polymerase IV [Escherichia coli P12b]
gi|383474725|gb|EID66705.1| DNA polymerase IV [Escherichia coli W26]
gi|384377367|gb|EIE35261.1| DNA polymerase IV [Escherichia coli J53]
gi|384470373|gb|EIE54485.1| DNA polymerase IV [Escherichia coli AI27]
gi|385156093|gb|EIF18092.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|385540238|gb|EIF87061.1| DNA polymerase IV [Escherichia coli M919]
gi|385713513|gb|EIG50445.1| DNA polymerase IV [Escherichia coli H730]
gi|386123629|gb|EIG72220.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386145118|gb|EIG91582.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|386153363|gb|EIH04652.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|386209228|gb|EII19715.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|386233494|gb|EII65475.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|386237770|gb|EII74714.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|386252635|gb|EIJ02326.1| DNA polymerase IV [Escherichia coli B41]
gi|388398494|gb|EIL59385.1| DNA polymerase IV [Escherichia coli 75]
gi|388406661|gb|EIL67057.1| DNA polymerase IV [Escherichia coli 541-1]
gi|391289580|gb|EIQ48072.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|391289700|gb|EIQ48187.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|391297130|gb|EIQ55197.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|391307028|gb|EIQ64768.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|397903383|gb|EJL19684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|404292949|gb|EJZ49726.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|406779279|gb|AFS58703.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055874|gb|AFS75925.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063741|gb|AFS84788.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408199329|gb|EKI24531.1| DNA polymerase IV [Escherichia coli TW15901]
gi|408206458|gb|EKI31260.1| DNA polymerase IV [Escherichia coli TW00353]
gi|408219187|gb|EKI43353.1| DNA polymerase IV [Escherichia coli 3006]
gi|408458911|gb|EKJ82696.1| DNA polymerase IV [Escherichia coli AD30]
gi|408573916|gb|EKK49721.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|429351348|gb|EKY88068.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429352051|gb|EKY88767.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352809|gb|EKY89518.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429366722|gb|EKZ03323.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429367633|gb|EKZ04225.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429370128|gb|EKZ06694.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429382515|gb|EKZ18979.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429384748|gb|EKZ21202.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429385271|gb|EKZ21724.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429396964|gb|EKZ33311.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429399210|gb|EKZ35531.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429399499|gb|EKZ35819.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410254|gb|EKZ46476.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429412154|gb|EKZ48351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429419139|gb|EKZ55277.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427698|gb|EKZ63778.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434542|gb|EKZ70566.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429435366|gb|EKZ71384.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429439924|gb|EKZ75903.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429444507|gb|EKZ80452.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450811|gb|EKZ86703.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456301|gb|EKZ92146.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|430889126|gb|ELC11795.1| DNA polymerase IV [Escherichia coli KTE10]
gi|430944387|gb|ELC64484.1| DNA polymerase IV [Escherichia coli KTE44]
gi|431019546|gb|ELD32942.1| DNA polymerase IV [Escherichia coli KTE212]
gi|431057654|gb|ELD67077.1| DNA polymerase IV [Escherichia coli KTE233]
gi|431100334|gb|ELE05338.1| DNA polymerase IV [Escherichia coli KTE51]
gi|431109270|gb|ELE13236.1| DNA polymerase IV [Escherichia coli KTE56]
gi|431165705|gb|ELE66037.1| DNA polymerase IV [Escherichia coli KTE77]
gi|431174381|gb|ELE74427.1| DNA polymerase IV [Escherichia coli KTE81]
gi|431203978|gb|ELF02561.1| DNA polymerase IV [Escherichia coli KTE111]
gi|431214156|gb|ELF11988.1| DNA polymerase IV [Escherichia coli KTE119]
gi|431225659|gb|ELF22853.1| DNA polymerase IV [Escherichia coli KTE156]
gi|431231751|gb|ELF27435.1| DNA polymerase IV [Escherichia coli KTE161]
gi|431247804|gb|ELF42018.1| DNA polymerase IV [Escherichia coli KTE171]
gi|431266864|gb|ELF58397.1| DNA polymerase IV [Escherichia coli KTE9]
gi|431287982|gb|ELF78768.1| DNA polymerase IV [Escherichia coli KTE42]
gi|431313688|gb|ELG01657.1| DNA polymerase IV [Escherichia coli KTE48]
gi|431380028|gb|ELG64928.1| DNA polymerase IV [Escherichia coli KTE135]
gi|431414302|gb|ELG97045.1| DNA polymerase IV [Escherichia coli KTE154]
gi|431463836|gb|ELH43959.1| DNA polymerase IV [Escherichia coli KTE196]
gi|431470804|gb|ELH50698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|431560660|gb|ELI34169.1| DNA polymerase IV [Escherichia coli KTE117]
gi|431573448|gb|ELI46247.1| DNA polymerase IV [Escherichia coli KTE120]
gi|431696825|gb|ELJ61978.1| DNA polymerase IV [Escherichia coli KTE232]
gi|441606093|emb|CCP97224.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441650606|emb|CCQ03511.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449325468|gb|EMD15372.1| DNA polymerase IV [Escherichia coli S17]
Length = 351
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|24111721|ref|NP_706231.1| DNA polymerase IV [Shigella flexneri 2a str. 301]
gi|30061848|ref|NP_836019.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|384541857|ref|YP_005725918.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|415859559|ref|ZP_11533758.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|417700311|ref|ZP_12349456.1| DNA polymerase IV [Shigella flexneri K-218]
gi|417705742|ref|ZP_12354814.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|417710878|ref|ZP_12359885.1| DNA polymerase IV [Shigella flexneri K-272]
gi|417715544|ref|ZP_12364480.1| DNA polymerase IV [Shigella flexneri K-227]
gi|417721265|ref|ZP_12370115.1| DNA polymerase IV [Shigella flexneri K-304]
gi|417726647|ref|ZP_12375394.1| DNA polymerase IV [Shigella flexneri K-671]
gi|417731847|ref|ZP_12380519.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|417737137|ref|ZP_12385746.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|417741777|ref|ZP_12390331.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|418253475|ref|ZP_12878500.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
gi|420318723|ref|ZP_14820582.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|420329470|ref|ZP_14831180.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|420339821|ref|ZP_14841352.1| DNA polymerase IV [Shigella flexneri K-404]
gi|81723732|sp|Q83M86.1|DPO4_SHIFL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|24050502|gb|AAN41938.1| damage-inducible protein P [Shigella flexneri 2a str. 301]
gi|30040092|gb|AAP15825.1| damage-inducible protein P [Shigella flexneri 2a str. 2457T]
gi|281599641|gb|ADA72625.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|313646637|gb|EFS11096.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|332761629|gb|EGJ91909.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|332761724|gb|EGJ92003.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|332764446|gb|EGJ94679.1| DNA polymerase IV [Shigella flexneri K-671]
gi|332768578|gb|EGJ98760.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|333008732|gb|EGK28196.1| DNA polymerase IV [Shigella flexneri K-218]
gi|333009710|gb|EGK29160.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|333010782|gb|EGK30208.1| DNA polymerase IV [Shigella flexneri K-272]
gi|333021280|gb|EGK40533.1| DNA polymerase IV [Shigella flexneri K-227]
gi|333022110|gb|EGK41353.1| DNA polymerase IV [Shigella flexneri K-304]
gi|391255077|gb|EIQ14230.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|391260219|gb|EIQ19283.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|391274563|gb|EIQ33370.1| DNA polymerase IV [Shigella flexneri K-404]
gi|397901349|gb|EJL17695.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
Length = 351
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 151/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 161/364 (44%), Gaps = 76/364 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY VEQR P+L+G P AV GGG + A YEAR YGV+
Sbjct: 7 RKIIHVDMDAFYASVEQRDFPELKGKPIAV-------GGGNNRGVVAAASYEARKYGVRS 59
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M AK++CP + V K YR S+ I +++LD
Sbjct: 60 AMPSITAKKLCPDLIFV-------KHRFDKYREVSSQ---------------IRDIFLDY 97
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE L + N ATV
Sbjct: 98 TDLVE-------PLSLDEA--------YLDVTENKLNYPSATV----------------- 125
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
I ++R ++ + T T SAGI+ NK +AK+AS NKP Q T+ V L+ L
Sbjct: 126 ----IAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITPEEVIPFLEELE 181
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G + + G+ T L + S + LQE +G +G +NI RGI V+
Sbjct: 182 IRKFHGIGKVTAEKMYLQ-GIFTGAHLKERSLEFLQEHFG-KSGAHYYNIVRGIHHSPVK 239
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+ KS G+ ++F + + ++ L Q+ EE+ +RL + K + TL + S
Sbjct: 240 PDRIRKSLGAERTF--SENISSEIFMKERLTQIAEEIEKRLAKNDVAGKTV--TLKIKYS 295
Query: 367 AFKS 370
FK+
Sbjct: 296 DFKT 299
>gi|58268086|ref|XP_571199.1| eta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57227433|gb|AAW43892.1| eta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 690
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 160/374 (42%), Gaps = 58/374 (15%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R IAH D+D Y Q EQ + +P Q+ +IAV Y AR YG+KR +
Sbjct: 35 RTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQ-----SIIAVNYPARKYGIKRFTSIE 89
Query: 72 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK---G 112
+AK++CP + + V R K L YR ++++I K G
Sbjct: 90 DAKKMCPHLRIQHVATYRNGESEAGYWDDVDPRTHKVSLDVYRRESLKILAIFKEKIPRG 149
Query: 113 RCERASIDEVYLDLTD-------AAEAMLAETPPESLDEVDEEALKSH------------ 153
E+ASIDE +LDLT AA L++ P ++ + +D
Sbjct: 150 EIEKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGSVFP 209
Query: 154 ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
I G E G D + +E D D D T + E C G
Sbjct: 210 IDGKEDGSGTDHQEDKEEDERSEDGDEFDGR--------TSGSNRDSWEDWALCMGG--- 258
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 273
++++ L S KP QT + ++V L+ ++ LGGKLG ++ + G TVGD+
Sbjct: 259 -ELMSNLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQQFGAKTVGDM 317
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
L S D++Q +G W++NI RGI EV R+ KS + KS A+ +
Sbjct: 318 LTVSLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLASKSIRP--AVTSPQQGH 374
Query: 334 HWLNQLCEELSERL 347
WL+ L EL+ RL
Sbjct: 375 QWLSILAGELNVRL 388
>gi|157156229|ref|YP_001461421.1| DNA polymerase IV [Escherichia coli E24377A]
gi|191165703|ref|ZP_03027542.1| DNA polymerase IV [Escherichia coli B7A]
gi|193063270|ref|ZP_03044361.1| DNA polymerase IV [Escherichia coli E22]
gi|194427631|ref|ZP_03060179.1| DNA polymerase IV [Escherichia coli B171]
gi|260842478|ref|YP_003220256.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|260853485|ref|YP_003227376.1| DNA polymerase IV [Escherichia coli O26:H11 str. 11368]
gi|260866431|ref|YP_003232833.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300823445|ref|ZP_07103575.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300921971|ref|ZP_07138117.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|301325439|ref|ZP_07218925.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|331666565|ref|ZP_08367439.1| DNA polymerase IV [Escherichia coli TA271]
gi|331675915|ref|ZP_08376632.1| DNA polymerase IV [Escherichia coli H591]
gi|415780327|ref|ZP_11490550.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|415801746|ref|ZP_11499726.1| DNA polymerase IV [Escherichia coli E128010]
gi|415814397|ref|ZP_11506017.1| DNA polymerase IV [Escherichia coli LT-68]
gi|415821217|ref|ZP_11510231.1| DNA polymerase IV [Escherichia coli OK1180]
gi|416342416|ref|ZP_11676647.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|417139526|ref|ZP_11982948.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|417173878|ref|ZP_12003674.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|417186796|ref|ZP_12011827.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|417190773|ref|ZP_12013369.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|417216634|ref|ZP_12023306.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|417252579|ref|ZP_12044338.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|417268239|ref|ZP_12055600.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|417299321|ref|ZP_12086551.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|417311526|ref|ZP_12098251.1| DNA polymerase IV [Escherichia coli PCN033]
gi|417589919|ref|ZP_12240640.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|417595109|ref|ZP_12245781.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|418945175|ref|ZP_13498083.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|419195265|ref|ZP_13738677.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|419201317|ref|ZP_13744547.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|419207244|ref|ZP_13750373.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|419213691|ref|ZP_13756723.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|419219514|ref|ZP_13762471.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|419224983|ref|ZP_13767875.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|419230880|ref|ZP_13773673.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|419236112|ref|ZP_13778864.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|419241701|ref|ZP_13784351.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|419247104|ref|ZP_13789721.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|419252871|ref|ZP_13795422.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|419258875|ref|ZP_13801336.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|419264918|ref|ZP_13807305.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|419270564|ref|ZP_13812897.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|419276359|ref|ZP_13818629.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|419281933|ref|ZP_13824156.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|419287730|ref|ZP_13829848.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|419293066|ref|ZP_13835127.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|419304792|ref|ZP_13846706.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|419309819|ref|ZP_13851696.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|419315128|ref|ZP_13856958.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|419320903|ref|ZP_13862647.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|419327148|ref|ZP_13868781.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|419332519|ref|ZP_13874085.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|419339504|ref|ZP_13880981.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|419379121|ref|ZP_13920102.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|419384373|ref|ZP_13925280.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|419868034|ref|ZP_14390337.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|419885738|ref|ZP_14406415.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|419888861|ref|ZP_14409324.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|419897859|ref|ZP_14417433.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|419901234|ref|ZP_14420604.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|419908192|ref|ZP_14426938.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|419949116|ref|ZP_14465373.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|420090813|ref|ZP_14602576.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|420097127|ref|ZP_14608432.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|420102342|ref|ZP_14613355.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|420110151|ref|ZP_14620184.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|420116243|ref|ZP_14625686.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|420122888|ref|ZP_14631791.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|420127544|ref|ZP_14636169.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|420133582|ref|ZP_14641796.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|420389587|ref|ZP_14888860.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|422835044|ref|ZP_16883102.1| DNA polymerase IV [Escherichia coli E101]
gi|422957405|ref|ZP_16969619.1| DNA polymerase IV [Escherichia coli H494]
gi|422976448|ref|ZP_16977049.1| DNA polymerase IV [Escherichia coli TA124]
gi|423709983|ref|ZP_17684333.1| DNA polymerase IV [Escherichia coli B799]
gi|424748379|ref|ZP_18176525.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|424759498|ref|ZP_18187162.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|424770422|ref|ZP_18197624.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|425377041|ref|ZP_18761460.1| DNA polymerase IV [Escherichia coli EC1865]
gi|432375351|ref|ZP_19618365.1| DNA polymerase IV [Escherichia coli KTE12]
gi|432812388|ref|ZP_20046237.1| DNA polymerase IV [Escherichia coli KTE101]
gi|432833329|ref|ZP_20066877.1| DNA polymerase IV [Escherichia coli KTE136]
gi|432872913|ref|ZP_20092611.1| DNA polymerase IV [Escherichia coli KTE147]
gi|432966383|ref|ZP_20155303.1| DNA polymerase IV [Escherichia coli KTE203]
gi|450210255|ref|ZP_21894032.1| DNA polymerase IV [Escherichia coli O08]
gi|189027662|sp|A7ZHZ2.1|DPO4_ECO24 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157078259|gb|ABV17967.1| DNA polymerase IV [Escherichia coli E24377A]
gi|190904210|gb|EDV63920.1| DNA polymerase IV [Escherichia coli B7A]
gi|192931178|gb|EDV83781.1| DNA polymerase IV [Escherichia coli E22]
gi|194414401|gb|EDX30675.1| DNA polymerase IV [Escherichia coli B171]
gi|257752134|dbj|BAI23636.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. 11368]
gi|257757625|dbj|BAI29122.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|257762787|dbj|BAI34282.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300421641|gb|EFK04952.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|300524063|gb|EFK45132.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300847737|gb|EFK75497.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|320201150|gb|EFW75733.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|323158084|gb|EFZ44183.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|323160304|gb|EFZ46257.1| DNA polymerase IV [Escherichia coli E128010]
gi|323171085|gb|EFZ56734.1| DNA polymerase IV [Escherichia coli LT-68]
gi|323178473|gb|EFZ64051.1| DNA polymerase IV [Escherichia coli OK1180]
gi|331065789|gb|EGI37673.1| DNA polymerase IV [Escherichia coli TA271]
gi|331076475|gb|EGI47752.1| DNA polymerase IV [Escherichia coli H591]
gi|338766893|gb|EGP21788.1| DNA polymerase IV [Escherichia coli PCN033]
gi|345346277|gb|EGW78613.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|345362411|gb|EGW94563.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|371593951|gb|EHN82824.1| DNA polymerase IV [Escherichia coli TA124]
gi|371598406|gb|EHN87207.1| DNA polymerase IV [Escherichia coli H494]
gi|371613370|gb|EHO01869.1| DNA polymerase IV [Escherichia coli E101]
gi|375319510|gb|EHS65649.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|378053892|gb|EHW16182.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|378057556|gb|EHW19783.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|378063638|gb|EHW25804.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|378069002|gb|EHW31097.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|378072568|gb|EHW34625.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|378082703|gb|EHW44647.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|378083002|gb|EHW44941.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|378091174|gb|EHW53007.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|378095024|gb|EHW56814.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|378103286|gb|EHW64956.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|378108255|gb|EHW69870.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|378117382|gb|EHW78897.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|378119153|gb|EHW80648.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|378121509|gb|EHW82960.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|378134548|gb|EHW95869.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|378136364|gb|EHW97658.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|378140419|gb|EHX01646.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|378147177|gb|EHX08325.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|378152921|gb|EHX14007.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|378161542|gb|EHX22518.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|378175763|gb|EHX36577.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|378175934|gb|EHX36745.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|378176918|gb|EHX37719.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|378190970|gb|EHX51546.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|378192154|gb|EHX52720.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|378234266|gb|EHX94344.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|378237724|gb|EHX97746.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|385704631|gb|EIG41703.1| DNA polymerase IV [Escherichia coli B799]
gi|386157254|gb|EIH13596.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|386176570|gb|EIH54049.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|386181871|gb|EIH64630.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|386191745|gb|EIH80486.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|386193496|gb|EIH87780.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|386216510|gb|EII32999.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|386230597|gb|EII57952.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|386257113|gb|EIJ12604.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|388346124|gb|EIL11866.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|388348168|gb|EIL13787.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|388354612|gb|EIL19515.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|388359096|gb|EIL23450.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|388375707|gb|EIL38709.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|388376486|gb|EIL39399.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|388419826|gb|EIL79536.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|391315132|gb|EIQ72665.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|394385113|gb|EJE62657.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|394385211|gb|EJE62752.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|394388729|gb|EJE65972.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|394404379|gb|EJE79786.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|394404527|gb|EJE79896.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|394411939|gb|EJE86120.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|394418029|gb|EJE91732.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|394425091|gb|EJE98115.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|408310459|gb|EKJ27508.1| DNA polymerase IV [Escherichia coli EC1865]
gi|421942427|gb|EKT99761.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|421944722|gb|EKU01967.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|421947192|gb|EKU04275.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|430901255|gb|ELC23223.1| DNA polymerase IV [Escherichia coli KTE12]
gi|431357280|gb|ELG43947.1| DNA polymerase IV [Escherichia coli KTE101]
gi|431388491|gb|ELG72214.1| DNA polymerase IV [Escherichia coli KTE136]
gi|431405014|gb|ELG88257.1| DNA polymerase IV [Escherichia coli KTE147]
gi|431475744|gb|ELH55548.1| DNA polymerase IV [Escherichia coli KTE203]
gi|449323141|gb|EMD13107.1| DNA polymerase IV [Escherichia coli O08]
Length = 351
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|218703546|ref|YP_002411065.1| DNA polymerase IV [Escherichia coli UMN026]
gi|293403377|ref|ZP_06647468.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298378989|ref|ZP_06988870.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300899474|ref|ZP_07117722.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|387605765|ref|YP_006094621.1| DNA polymerase IV [Escherichia coli 042]
gi|419937299|ref|ZP_14454208.1| DNA polymerase IV [Escherichia coli 576-1]
gi|432351904|ref|ZP_19595216.1| DNA polymerase IV [Escherichia coli KTE2]
gi|432400372|ref|ZP_19643133.1| DNA polymerase IV [Escherichia coli KTE26]
gi|432429401|ref|ZP_19671865.1| DNA polymerase IV [Escherichia coli KTE181]
gi|432459232|ref|ZP_19701398.1| DNA polymerase IV [Escherichia coli KTE204]
gi|432474291|ref|ZP_19716304.1| DNA polymerase IV [Escherichia coli KTE208]
gi|432492561|ref|ZP_19734401.1| DNA polymerase IV [Escherichia coli KTE213]
gi|432520899|ref|ZP_19758066.1| DNA polymerase IV [Escherichia coli KTE228]
gi|432541115|ref|ZP_19777992.1| DNA polymerase IV [Escherichia coli KTE235]
gi|432629807|ref|ZP_19865760.1| DNA polymerase IV [Escherichia coli KTE80]
gi|432639371|ref|ZP_19875218.1| DNA polymerase IV [Escherichia coli KTE83]
gi|432664449|ref|ZP_19900047.1| DNA polymerase IV [Escherichia coli KTE116]
gi|432773442|ref|ZP_20007734.1| DNA polymerase IV [Escherichia coli KTE54]
gi|432837814|ref|ZP_20071308.1| DNA polymerase IV [Escherichia coli KTE140]
gi|432884160|ref|ZP_20099185.1| DNA polymerase IV [Escherichia coli KTE158]
gi|432909829|ref|ZP_20117077.1| DNA polymerase IV [Escherichia coli KTE190]
gi|433017218|ref|ZP_20205491.1| DNA polymerase IV [Escherichia coli KTE105]
gi|433051502|ref|ZP_20238748.1| DNA polymerase IV [Escherichia coli KTE122]
gi|433066408|ref|ZP_20253260.1| DNA polymerase IV [Escherichia coli KTE128]
gi|433157182|ref|ZP_20342062.1| DNA polymerase IV [Escherichia coli KTE177]
gi|433176648|ref|ZP_20361125.1| DNA polymerase IV [Escherichia coli KTE82]
gi|433201685|ref|ZP_20385499.1| DNA polymerase IV [Escherichia coli KTE95]
gi|59889801|emb|CAH19157.1| Damage inducible protein P [Escherichia coli 042]
gi|218430643|emb|CAR11509.1| DNA polymerase IV [Escherichia coli UMN026]
gi|284920065|emb|CBG33122.1| DNA polymerase IV [Escherichia coli 042]
gi|291429230|gb|EFF02250.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298280102|gb|EFI21606.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300356953|gb|EFJ72823.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|388398069|gb|EIL59011.1| DNA polymerase IV [Escherichia coli 576-1]
gi|430880894|gb|ELC04158.1| DNA polymerase IV [Escherichia coli KTE2]
gi|430930487|gb|ELC50988.1| DNA polymerase IV [Escherichia coli KTE26]
gi|430947998|gb|ELC67680.1| DNA polymerase IV [Escherichia coli KTE181]
gi|430992835|gb|ELD09196.1| DNA polymerase IV [Escherichia coli KTE204]
gi|431010231|gb|ELD24579.1| DNA polymerase IV [Escherichia coli KTE208]
gi|431013536|gb|ELD27266.1| DNA polymerase IV [Escherichia coli KTE213]
gi|431045862|gb|ELD56000.1| DNA polymerase IV [Escherichia coli KTE228]
gi|431064734|gb|ELD73593.1| DNA polymerase IV [Escherichia coli KTE235]
gi|431174927|gb|ELE74959.1| DNA polymerase IV [Escherichia coli KTE80]
gi|431185687|gb|ELE85392.1| DNA polymerase IV [Escherichia coli KTE83]
gi|431205008|gb|ELF03518.1| DNA polymerase IV [Escherichia coli KTE116]
gi|431321128|gb|ELG08743.1| DNA polymerase IV [Escherichia coli KTE54]
gi|431392151|gb|ELG75752.1| DNA polymerase IV [Escherichia coli KTE140]
gi|431420388|gb|ELH02673.1| DNA polymerase IV [Escherichia coli KTE158]
gi|431447905|gb|ELH28624.1| DNA polymerase IV [Escherichia coli KTE190]
gi|431537801|gb|ELI13914.1| DNA polymerase IV [Escherichia coli KTE105]
gi|431576189|gb|ELI48888.1| DNA polymerase IV [Escherichia coli KTE122]
gi|431592583|gb|ELI63155.1| DNA polymerase IV [Escherichia coli KTE128]
gi|431682845|gb|ELJ48493.1| DNA polymerase IV [Escherichia coli KTE177]
gi|431711199|gb|ELJ75553.1| DNA polymerase IV [Escherichia coli KTE82]
gi|431726787|gb|ELJ90556.1| DNA polymerase IV [Escherichia coli KTE95]
Length = 351
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A + CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKFCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 135/298 (45%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I H+D+D FY VEQR P LRGLP V W G + A YEAR YGV +M
Sbjct: 6 RKIVHIDMDAFYASVEQRDNPALRGLPVVVA----WTGPRSVVCAASYEARRYGVHSAMA 61
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + V VP D + YR +V +I AR TD
Sbjct: 62 AARAQRLCP--DAVYVP-----PDFNRYREVSRQVRAIFARH---------------TDL 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE + + + LGL A
Sbjct: 100 IE-------PLSLDEAYLD-VTCNKLGL----------------------------ASAT 123
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R Q+ +ET T SAG+A NK LAK+AS NKP + S V L LP++K
Sbjct: 124 EVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIKPSRVLDFLQPLPVRK 183
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ +G + L+ +LG+ TVGDL + S +L++ +G G L+ +ARGI VQA
Sbjct: 184 VPGVGKVMQARLE-QLGIQTVGDLSRHSVAELEQRFG-RYGVRLYELARGIDERAVQA 239
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 169/366 (46%), Gaps = 72/366 (19%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRGDE 72
I H+D+D FY QVEQR P+L+G P V+ + + G++A YEAR +GV +M
Sbjct: 4 IIHLDMDAFYAQVEQRDNPELKGKP--VIVGGKSRNRGVVATASYEARKFGVHSAMPTSR 61
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEA 132
A ++CP V YR+ +++++ + Y D+
Sbjct: 62 AYQLCPDGHYVS-------PRFDVYRSVSQQIMNVF------------KSYTDIVQ---- 98
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
P SLDE D H + I
Sbjct: 99 ------PLSLDE-----------------------------AYLDITHLVRPDLGASQIA 123
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
++ V + T TCSAG+++NK LAK+ASGMNKP T + +++V+ +LD+LPI +
Sbjct: 124 ASIKHDVYETTHLTCSAGVSYNKFLAKIASGMNKPNGLTVIHYNNVQQILDALPIGEFPG 183
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ ++L + T DL + SE +L E +G G+ L+N ARGI + ++ K
Sbjct: 184 V-GKVTEQKMHKLKIATGKDLRQLSEIELIEQFG-KKGSSLYNKARGIGTDIIEVERERK 241
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 372
S G +F + + + ++ ++ E +E++ + L+ ++A T+T+ K+SD
Sbjct: 242 SIGKETTFAHDK------NDESYILRVMNEQTEKVAAKLQSMNKVADTITV---KIKTSD 292
Query: 373 SDSRKK 378
+S K
Sbjct: 293 FESHTK 298
>gi|26246277|ref|NP_752316.1| DNA polymerase IV [Escherichia coli CFT073]
gi|227884751|ref|ZP_04002556.1| DNA polymerase IV [Escherichia coli 83972]
gi|300977370|ref|ZP_07173861.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|301045874|ref|ZP_07193061.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|331656311|ref|ZP_08357273.1| DNA polymerase IV [Escherichia coli TA206]
gi|331681650|ref|ZP_08382283.1| DNA polymerase IV [Escherichia coli H299]
gi|386627857|ref|YP_006147577.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|386632777|ref|YP_006152496.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386637671|ref|YP_006104469.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|417144149|ref|ZP_11985955.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|422362112|ref|ZP_16442686.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|422367371|ref|ZP_16447820.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|432410336|ref|ZP_19653019.1| DNA polymerase IV [Escherichia coli KTE39]
gi|432434908|ref|ZP_19677310.1| DNA polymerase IV [Escherichia coli KTE188]
gi|432455211|ref|ZP_19697415.1| DNA polymerase IV [Escherichia coli KTE201]
gi|432494133|ref|ZP_19735952.1| DNA polymerase IV [Escherichia coli KTE214]
gi|432502994|ref|ZP_19744732.1| DNA polymerase IV [Escherichia coli KTE220]
gi|432522416|ref|ZP_19759556.1| DNA polymerase IV [Escherichia coli KTE230]
gi|432567127|ref|ZP_19803654.1| DNA polymerase IV [Escherichia coli KTE53]
gi|432591390|ref|ZP_19827719.1| DNA polymerase IV [Escherichia coli KTE60]
gi|432606171|ref|ZP_19842368.1| DNA polymerase IV [Escherichia coli KTE67]
gi|432615051|ref|ZP_19851186.1| DNA polymerase IV [Escherichia coli KTE75]
gi|432649814|ref|ZP_19885577.1| DNA polymerase IV [Escherichia coli KTE87]
gi|432782195|ref|ZP_20016381.1| DNA polymerase IV [Escherichia coli KTE63]
gi|432897074|ref|ZP_20108070.1| DNA polymerase IV [Escherichia coli KTE192]
gi|432977007|ref|ZP_20165833.1| DNA polymerase IV [Escherichia coli KTE209]
gi|432998500|ref|ZP_20187041.1| DNA polymerase IV [Escherichia coli KTE223]
gi|433027326|ref|ZP_20215203.1| DNA polymerase IV [Escherichia coli KTE109]
gi|433056568|ref|ZP_20243663.1| DNA polymerase IV [Escherichia coli KTE124]
gi|433085886|ref|ZP_20272293.1| DNA polymerase IV [Escherichia coli KTE137]
gi|433123831|ref|ZP_20309427.1| DNA polymerase IV [Escherichia coli KTE160]
gi|433137901|ref|ZP_20323191.1| DNA polymerase IV [Escherichia coli KTE167]
gi|433147740|ref|ZP_20332809.1| DNA polymerase IV [Escherichia coli KTE174]
gi|433211173|ref|ZP_20394792.1| DNA polymerase IV [Escherichia coli KTE99]
gi|442605942|ref|ZP_21020751.1| DNA polymerase IV [Escherichia coli Nissle 1917]
gi|29427651|sp|P59477.1|DPO4_ECOL6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|26106675|gb|AAN78860.1|AE016756_43 DNA polymerase IV [Escherichia coli CFT073]
gi|227838352|gb|EEJ48818.1| DNA polymerase IV [Escherichia coli 83972]
gi|300302124|gb|EFJ58509.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|300409895|gb|EFJ93433.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|307552163|gb|ADN44938.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|315295163|gb|EFU54498.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|315300865|gb|EFU60087.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|331054559|gb|EGI26568.1| DNA polymerase IV [Escherichia coli TA206]
gi|331080852|gb|EGI52017.1| DNA polymerase IV [Escherichia coli H299]
gi|355418756|gb|AER82953.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|355423676|gb|AER87872.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386164032|gb|EIH25818.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|430938272|gb|ELC58513.1| DNA polymerase IV [Escherichia coli KTE39]
gi|430967292|gb|ELC84647.1| DNA polymerase IV [Escherichia coli KTE188]
gi|430985634|gb|ELD02227.1| DNA polymerase IV [Escherichia coli KTE201]
gi|431028666|gb|ELD41708.1| DNA polymerase IV [Escherichia coli KTE214]
gi|431042411|gb|ELD52900.1| DNA polymerase IV [Escherichia coli KTE220]
gi|431055130|gb|ELD64693.1| DNA polymerase IV [Escherichia coli KTE230]
gi|431102960|gb|ELE07630.1| DNA polymerase IV [Escherichia coli KTE53]
gi|431132834|gb|ELE34832.1| DNA polymerase IV [Escherichia coli KTE60]
gi|431141797|gb|ELE43560.1| DNA polymerase IV [Escherichia coli KTE67]
gi|431157991|gb|ELE58612.1| DNA polymerase IV [Escherichia coli KTE75]
gi|431193643|gb|ELE92975.1| DNA polymerase IV [Escherichia coli KTE87]
gi|431331907|gb|ELG19150.1| DNA polymerase IV [Escherichia coli KTE63]
gi|431429884|gb|ELH11718.1| DNA polymerase IV [Escherichia coli KTE192]
gi|431483035|gb|ELH62735.1| DNA polymerase IV [Escherichia coli KTE209]
gi|431514879|gb|ELH92718.1| DNA polymerase IV [Escherichia coli KTE223]
gi|431546441|gb|ELI20838.1| DNA polymerase IV [Escherichia coli KTE109]
gi|431574801|gb|ELI47560.1| DNA polymerase IV [Escherichia coli KTE124]
gi|431610462|gb|ELI79754.1| DNA polymerase IV [Escherichia coli KTE137]
gi|431650663|gb|ELJ17979.1| DNA polymerase IV [Escherichia coli KTE160]
gi|431665368|gb|ELJ32087.1| DNA polymerase IV [Escherichia coli KTE167]
gi|431677496|gb|ELJ43572.1| DNA polymerase IV [Escherichia coli KTE174]
gi|431736312|gb|ELJ99642.1| DNA polymerase IV [Escherichia coli KTE99]
gi|441712967|emb|CCQ06728.1| DNA polymerase IV [Escherichia coli Nissle 1917]
Length = 351
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|422764774|ref|ZP_16818501.1| impB/mucB/samB family protein [Escherichia coli E1520]
gi|323938777|gb|EGB35023.1| impB/mucB/samB family protein [Escherichia coli E1520]
Length = 351
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPTEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|306813279|ref|ZP_07447472.1| DNA polymerase IV [Escherichia coli NC101]
gi|432970436|ref|ZP_20159315.1| DNA polymerase IV [Escherichia coli KTE207]
gi|433081206|ref|ZP_20267682.1| DNA polymerase IV [Escherichia coli KTE133]
gi|305854042|gb|EFM54481.1| DNA polymerase IV [Escherichia coli NC101]
gi|431486207|gb|ELH65858.1| DNA polymerase IV [Escherichia coli KTE207]
gi|431606254|gb|ELI75633.1| DNA polymerase IV [Escherichia coli KTE133]
Length = 350
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 149/342 (43%), Gaps = 73/342 (21%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 3 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 61
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 LKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 113
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
C A LI
Sbjct: 114 -----------------------------------------CHGSA----------TLIA 122
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 182
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L K
Sbjct: 183 V-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRK 240
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
S G ++ + HW CE + ERL +LE+
Sbjct: 241 SVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|429030285|ref|ZP_19096187.1| DNA polymerase IV [Escherichia coli 96.0939]
gi|427294596|gb|EKW57772.1| DNA polymerase IV [Escherichia coli 96.0939]
Length = 351
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|342183906|emb|CCC93386.1| putative DNA polymerase eta [Trypanosoma congolense IL3000]
Length = 517
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 163/368 (44%), Gaps = 40/368 (10%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IAH+D+DCFY QVE R R P + Q+ G LIAV Y AR +G+ R
Sbjct: 2 RCIAHLDMDCFYAQVEAVRLGIDCRTEPYVLSQW-----GNLIAVNYPARKFGIGRFDTL 56
Query: 71 DEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSILARKG-- 112
+EA++ CP ++ V A G K L YR A ++ IL
Sbjct: 57 EEARQKCPHVKFSHVATYAAGEVEYHYHENPRKQTHKVALEPYREASRKIFRILDEFDGV 116
Query: 113 RCERASIDEVYLDLTDAAEAMLAET---PP--ESLDEVDEEALKSHILGLESKDGNDSKA 167
E+ S+DE +LD+T AA+ + A T PP E E + L I + + K
Sbjct: 117 DVEKGSVDEAFLDVTRAAQQLQASTGLHPPGGECRLEDIVDPLTVIIPNRQEEISAWLKG 176
Query: 168 TVKEWLCRCDADHRDK-------LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 220
K ++ D + LLA +V+++R ++ E F CSAGIAHNK+LAK
Sbjct: 177 YGKTFMDVFDPSLHPQSTTESIVLLAAASHVVSKIRQRIYDELRFDCSAGIAHNKLLAKS 236
Query: 221 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 280
S +KP QQT + V + +P +K++ GGK G + G +
Sbjct: 237 ISARHKPNQQTLLFPDCVASAMWDMPFRKIRGFGGKFGEIVHKACGCKEMCQETWLFSLP 296
Query: 281 LQESYGFN--TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 338
+ S+ N + + RG ++ R + KS + K+F P T V+ W+
Sbjct: 297 VMRSFFVNDCDAEYAYRRLRGYDEGKIAERSISKSLIASKAFNPPSL--TTDGVKRWVVV 354
Query: 339 LCEELSER 346
L ELS R
Sbjct: 355 LASELSSR 362
>gi|432994080|ref|ZP_20182699.1| DNA polymerase IV [Escherichia coli KTE218]
gi|433114195|ref|ZP_20300016.1| DNA polymerase IV [Escherichia coli KTE153]
gi|431510662|gb|ELH88906.1| DNA polymerase IV [Escherichia coli KTE218]
gi|431637267|gb|ELJ05365.1| DNA polymerase IV [Escherichia coli KTE153]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|168750214|ref|ZP_02775236.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|168757259|ref|ZP_02782266.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|168770029|ref|ZP_02795036.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|168776129|ref|ZP_02801136.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|168782992|ref|ZP_02807999.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|168789704|ref|ZP_02814711.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|168800331|ref|ZP_02825338.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|195938634|ref|ZP_03084016.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4024]
gi|208807461|ref|ZP_03249798.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208812602|ref|ZP_03253931.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208820027|ref|ZP_03260347.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209399967|ref|YP_002268858.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|254791391|ref|YP_003076228.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|261223714|ref|ZP_05937995.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK2000]
gi|261255877|ref|ZP_05948410.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK966]
gi|291281075|ref|YP_003497893.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|387505183|ref|YP_006157439.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|416318859|ref|ZP_11661411.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|416328254|ref|ZP_11668044.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|416781031|ref|ZP_11877075.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|416793031|ref|ZP_11882249.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|416803736|ref|ZP_11886849.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|416813945|ref|ZP_11891438.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97]
gi|416824639|ref|ZP_11896104.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|416835278|ref|ZP_11901383.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|419066306|ref|ZP_13612994.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|419073361|ref|ZP_13618935.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|419078503|ref|ZP_13623990.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|419084152|ref|ZP_13629569.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|419090203|ref|ZP_13635524.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|419096132|ref|ZP_13641377.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|419101821|ref|ZP_13646989.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|419113079|ref|ZP_13658114.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|419118591|ref|ZP_13663578.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|419124239|ref|ZP_13669147.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|419129827|ref|ZP_13674683.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|420267592|ref|ZP_14770000.1| DNA polymerase IV [Escherichia coli PA22]
gi|420273226|ref|ZP_14775560.1| DNA polymerase IV [Escherichia coli PA40]
gi|420278735|ref|ZP_14781002.1| DNA polymerase IV [Escherichia coli TW06591]
gi|420284829|ref|ZP_14787047.1| DNA polymerase IV [Escherichia coli TW10246]
gi|420290282|ref|ZP_14792450.1| DNA polymerase IV [Escherichia coli TW11039]
gi|420296005|ref|ZP_14798102.1| DNA polymerase IV [Escherichia coli TW09109]
gi|420301963|ref|ZP_14803996.1| DNA polymerase IV [Escherichia coli TW10119]
gi|420307650|ref|ZP_14809624.1| DNA polymerase IV [Escherichia coli EC1738]
gi|420313179|ref|ZP_14815090.1| DNA polymerase IV [Escherichia coli EC1734]
gi|421810416|ref|ZP_16246231.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|421821868|ref|ZP_16257312.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|424081296|ref|ZP_17818189.1| DNA polymerase IV [Escherichia coli FDA517]
gi|424087949|ref|ZP_17824244.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|424094183|ref|ZP_17829978.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|424113385|ref|ZP_17847571.1| DNA polymerase IV [Escherichia coli PA3]
gi|424131751|ref|ZP_17864590.1| DNA polymerase IV [Escherichia coli PA10]
gi|424184280|ref|ZP_17887664.1| DNA polymerase IV [Escherichia coli PA25]
gi|424261109|ref|ZP_17893562.1| DNA polymerase IV [Escherichia coli PA28]
gi|424459629|ref|ZP_17910618.1| DNA polymerase IV [Escherichia coli PA39]
gi|424466082|ref|ZP_17916308.1| DNA polymerase IV [Escherichia coli PA41]
gi|424478674|ref|ZP_17927947.1| DNA polymerase IV [Escherichia coli TW07945]
gi|424484695|ref|ZP_17933597.1| DNA polymerase IV [Escherichia coli TW09098]
gi|424490770|ref|ZP_17939228.1| DNA polymerase IV [Escherichia coli TW09195]
gi|424497905|ref|ZP_17945213.1| DNA polymerase IV [Escherichia coli EC4203]
gi|424504144|ref|ZP_17950957.1| DNA polymerase IV [Escherichia coli EC4196]
gi|424510386|ref|ZP_17956671.1| DNA polymerase IV [Escherichia coli TW14313]
gi|424517970|ref|ZP_17962432.1| DNA polymerase IV [Escherichia coli TW14301]
gi|424541876|ref|ZP_17984738.1| DNA polymerase IV [Escherichia coli EC4402]
gi|424548197|ref|ZP_17990440.1| DNA polymerase IV [Escherichia coli EC4439]
gi|424554478|ref|ZP_17996233.1| DNA polymerase IV [Escherichia coli EC4436]
gi|424560819|ref|ZP_18002134.1| DNA polymerase IV [Escherichia coli EC4437]
gi|424573032|ref|ZP_18013489.1| DNA polymerase IV [Escherichia coli EC1845]
gi|424579006|ref|ZP_18018968.1| DNA polymerase IV [Escherichia coli EC1863]
gi|425101766|ref|ZP_18504439.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|425129462|ref|ZP_18530590.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|425135804|ref|ZP_18536556.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|425148018|ref|ZP_18547942.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|425153634|ref|ZP_18553209.1| DNA polymerase IV [Escherichia coli PA34]
gi|425177683|ref|ZP_18575765.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|425190635|ref|ZP_18587789.1| DNA polymerase IV [Escherichia coli NE1487]
gi|425196965|ref|ZP_18593641.1| DNA polymerase IV [Escherichia coli NE037]
gi|425203633|ref|ZP_18599788.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|425240540|ref|ZP_18634204.1| DNA polymerase IV [Escherichia coli MA6]
gi|425246629|ref|ZP_18639859.1| DNA polymerase IV [Escherichia coli 5905]
gi|425252425|ref|ZP_18645332.1| DNA polymerase IV [Escherichia coli CB7326]
gi|425258760|ref|ZP_18651153.1| DNA polymerase IV [Escherichia coli EC96038]
gi|425264871|ref|ZP_18656815.1| DNA polymerase IV [Escherichia coli 5412]
gi|425292256|ref|ZP_18682877.1| DNA polymerase IV [Escherichia coli PA38]
gi|425309039|ref|ZP_18698538.1| DNA polymerase IV [Escherichia coli EC1735]
gi|425314964|ref|ZP_18704069.1| DNA polymerase IV [Escherichia coli EC1736]
gi|425321040|ref|ZP_18709746.1| DNA polymerase IV [Escherichia coli EC1737]
gi|425327203|ref|ZP_18715460.1| DNA polymerase IV [Escherichia coli EC1846]
gi|425333388|ref|ZP_18721142.1| DNA polymerase IV [Escherichia coli EC1847]
gi|425339806|ref|ZP_18727076.1| DNA polymerase IV [Escherichia coli EC1848]
gi|425345687|ref|ZP_18732522.1| DNA polymerase IV [Escherichia coli EC1849]
gi|425351906|ref|ZP_18738314.1| DNA polymerase IV [Escherichia coli EC1850]
gi|425357891|ref|ZP_18743889.1| DNA polymerase IV [Escherichia coli EC1856]
gi|425364006|ref|ZP_18749590.1| DNA polymerase IV [Escherichia coli EC1862]
gi|425383234|ref|ZP_18767139.1| DNA polymerase IV [Escherichia coli EC1866]
gi|425389935|ref|ZP_18773418.1| DNA polymerase IV [Escherichia coli EC1868]
gi|425396053|ref|ZP_18779124.1| DNA polymerase IV [Escherichia coli EC1869]
gi|425402036|ref|ZP_18784665.1| DNA polymerase IV [Escherichia coli EC1870]
gi|428944644|ref|ZP_19017317.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|428963029|ref|ZP_19034235.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|428969083|ref|ZP_19039744.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|428999510|ref|ZP_19068046.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|429036460|ref|ZP_19101923.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|429053602|ref|ZP_19118113.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|429064690|ref|ZP_19128580.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|429071309|ref|ZP_19134672.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|444922499|ref|ZP_21242239.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444928781|ref|ZP_21247948.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444934174|ref|ZP_21253133.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444939759|ref|ZP_21258422.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444945335|ref|ZP_21263769.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444950870|ref|ZP_21269109.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444967403|ref|ZP_21284886.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444972907|ref|ZP_21290206.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444978424|ref|ZP_21295427.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444988975|ref|ZP_21305722.1| DNA polymerase IV [Escherichia coli PA19]
gi|444994301|ref|ZP_21310907.1| DNA polymerase IV [Escherichia coli PA13]
gi|444999826|ref|ZP_21316295.1| DNA polymerase IV [Escherichia coli PA2]
gi|445005267|ref|ZP_21321618.1| DNA polymerase IV [Escherichia coli PA47]
gi|445010457|ref|ZP_21326659.1| DNA polymerase IV [Escherichia coli PA48]
gi|445016218|ref|ZP_21332275.1| DNA polymerase IV [Escherichia coli PA8]
gi|445021692|ref|ZP_21337621.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|445032409|ref|ZP_21348042.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|445038106|ref|ZP_21353584.1| DNA polymerase IV [Escherichia coli PA35]
gi|445043278|ref|ZP_21358622.1| DNA polymerase IV [Escherichia coli 3.4880]
gi|452971414|ref|ZP_21969641.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4009]
gi|187768454|gb|EDU32298.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|188015590|gb|EDU53712.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|188999602|gb|EDU68588.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|189355747|gb|EDU74166.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|189361061|gb|EDU79480.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|189370777|gb|EDU89193.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|189377361|gb|EDU95777.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|208727262|gb|EDZ76863.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208733879|gb|EDZ82566.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208740150|gb|EDZ87832.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209161367|gb|ACI38800.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|209745364|gb|ACI70989.1| damage-inducible protein DinP [Escherichia coli]
gi|209745368|gb|ACI70991.1| damage-inducible protein DinP [Escherichia coli]
gi|209745370|gb|ACI70992.1| damage-inducible protein DinP [Escherichia coli]
gi|209745372|gb|ACI70993.1| damage-inducible protein DinP [Escherichia coli]
gi|254590791|gb|ACT70152.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|290760948|gb|ADD54909.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|320190215|gb|EFW64865.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|320638166|gb|EFX07915.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|320643248|gb|EFX12447.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|320648895|gb|EFX17513.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|320654675|gb|EFX22676.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660243|gb|EFX27753.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|320665009|gb|EFX32119.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|326342451|gb|EGD66231.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|374357177|gb|AEZ38884.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|377921136|gb|EHU85143.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|377932632|gb|EHU96481.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|377934635|gb|EHU98462.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|377940705|gb|EHV04453.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|377950794|gb|EHV14417.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|377951760|gb|EHV15374.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|377955900|gb|EHV19453.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|377965870|gb|EHV29283.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|377973921|gb|EHV37251.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|377982138|gb|EHV45391.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|377983088|gb|EHV46335.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|390651325|gb|EIN29627.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|390653842|gb|EIN31944.1| DNA polymerase IV [Escherichia coli FDA517]
gi|390675300|gb|EIN51453.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|390689438|gb|EIN64390.1| DNA polymerase IV [Escherichia coli PA3]
gi|390709080|gb|EIN82213.1| DNA polymerase IV [Escherichia coli PA10]
gi|390720703|gb|EIN93411.1| DNA polymerase IV [Escherichia coli PA22]
gi|390734529|gb|EIO06046.1| DNA polymerase IV [Escherichia coli PA25]
gi|390737811|gb|EIO09068.1| DNA polymerase IV [Escherichia coli PA28]
gi|390762811|gb|EIO32066.1| DNA polymerase IV [Escherichia coli PA40]
gi|390777003|gb|EIO44879.1| DNA polymerase IV [Escherichia coli PA41]
gi|390785709|gb|EIO53251.1| DNA polymerase IV [Escherichia coli TW06591]
gi|390786878|gb|EIO54379.1| DNA polymerase IV [Escherichia coli PA39]
gi|390794948|gb|EIO62233.1| DNA polymerase IV [Escherichia coli TW10246]
gi|390802420|gb|EIO69457.1| DNA polymerase IV [Escherichia coli TW11039]
gi|390810887|gb|EIO77615.1| DNA polymerase IV [Escherichia coli TW07945]
gi|390811777|gb|EIO78462.1| DNA polymerase IV [Escherichia coli TW09109]
gi|390819763|gb|EIO86092.1| DNA polymerase IV [Escherichia coli TW10119]
gi|390824204|gb|EIO90207.1| DNA polymerase IV [Escherichia coli TW09098]
gi|390837680|gb|EIP02049.1| DNA polymerase IV [Escherichia coli EC4203]
gi|390840820|gb|EIP04819.1| DNA polymerase IV [Escherichia coli EC4196]
gi|390844539|gb|EIP08267.1| DNA polymerase IV [Escherichia coli TW09195]
gi|390856286|gb|EIP18904.1| DNA polymerase IV [Escherichia coli TW14301]
gi|390861790|gb|EIP24020.1| DNA polymerase IV [Escherichia coli TW14313]
gi|390886893|gb|EIP46938.1| DNA polymerase IV [Escherichia coli EC4402]
gi|390888618|gb|EIP48453.1| DNA polymerase IV [Escherichia coli EC4439]
gi|390895823|gb|EIP55251.1| DNA polymerase IV [Escherichia coli EC4436]
gi|390903876|gb|EIP62892.1| DNA polymerase IV [Escherichia coli EC1738]
gi|390911796|gb|EIP70485.1| DNA polymerase IV [Escherichia coli EC4437]
gi|390912249|gb|EIP70913.1| DNA polymerase IV [Escherichia coli EC1734]
gi|390925373|gb|EIP83075.1| DNA polymerase IV [Escherichia coli EC1863]
gi|390926499|gb|EIP84073.1| DNA polymerase IV [Escherichia coli EC1845]
gi|408077148|gb|EKH11361.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|408086778|gb|EKH20281.1| DNA polymerase IV [Escherichia coli PA34]
gi|408110766|gb|EKH42546.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|408122641|gb|EKH53466.1| DNA polymerase IV [Escherichia coli NE1487]
gi|408130775|gb|EKH60868.1| DNA polymerase IV [Escherichia coli NE037]
gi|408132747|gb|EKH62691.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|408173384|gb|EKI00408.1| DNA polymerase IV [Escherichia coli MA6]
gi|408175304|gb|EKI02236.1| DNA polymerase IV [Escherichia coli 5905]
gi|408187695|gb|EKI13623.1| DNA polymerase IV [Escherichia coli CB7326]
gi|408193072|gb|EKI18626.1| DNA polymerase IV [Escherichia coli 5412]
gi|408193438|gb|EKI18974.1| DNA polymerase IV [Escherichia coli EC96038]
gi|408233796|gb|EKI56870.1| DNA polymerase IV [Escherichia coli PA38]
gi|408240406|gb|EKI63097.1| DNA polymerase IV [Escherichia coli EC1735]
gi|408249932|gb|EKI71840.1| DNA polymerase IV [Escherichia coli EC1736]
gi|408254161|gb|EKI75706.1| DNA polymerase IV [Escherichia coli EC1737]
gi|408260604|gb|EKI81707.1| DNA polymerase IV [Escherichia coli EC1846]
gi|408269132|gb|EKI89419.1| DNA polymerase IV [Escherichia coli EC1847]
gi|408270855|gb|EKI91012.1| DNA polymerase IV [Escherichia coli EC1848]
gi|408279493|gb|EKI99099.1| DNA polymerase IV [Escherichia coli EC1849]
gi|408285961|gb|EKJ04932.1| DNA polymerase IV [Escherichia coli EC1850]
gi|408288793|gb|EKJ07595.1| DNA polymerase IV [Escherichia coli EC1856]
gi|408301411|gb|EKJ19032.1| DNA polymerase IV [Escherichia coli EC1862]
gi|408319081|gb|EKJ35252.1| DNA polymerase IV [Escherichia coli EC1868]
gi|408319154|gb|EKJ35314.1| DNA polymerase IV [Escherichia coli EC1866]
gi|408332099|gb|EKJ47189.1| DNA polymerase IV [Escherichia coli EC1869]
gi|408339326|gb|EKJ53933.1| DNA polymerase IV [Escherichia coli EC1870]
gi|408559634|gb|EKK35946.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|408591388|gb|EKK65821.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|408592913|gb|EKK67267.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|408606135|gb|EKK79602.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|408613102|gb|EKK86431.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|427218324|gb|EKV87335.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|427235148|gb|EKW02790.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|427236794|gb|EKW04351.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|427271555|gb|EKW36347.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|427307312|gb|EKW69784.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|427322322|gb|EKW83957.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|427335050|gb|EKW96099.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|427337139|gb|EKW98067.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|444543247|gb|ELV22541.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444551408|gb|ELV29354.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444552473|gb|ELV30284.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444565710|gb|ELV42563.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444568003|gb|ELV44711.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444572460|gb|ELV48886.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444586723|gb|ELV62211.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444600565|gb|ELV75399.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444609608|gb|ELV84065.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444615865|gb|ELV90053.1| DNA polymerase IV [Escherichia coli PA13]
gi|444615968|gb|ELV90150.1| DNA polymerase IV [Escherichia coli PA19]
gi|444624303|gb|ELV98203.1| DNA polymerase IV [Escherichia coli PA2]
gi|444633494|gb|ELW07018.1| DNA polymerase IV [Escherichia coli PA48]
gi|444633639|gb|ELW07145.1| DNA polymerase IV [Escherichia coli PA47]
gi|444638363|gb|ELW11702.1| DNA polymerase IV [Escherichia coli PA8]
gi|444648478|gb|ELW21407.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|444654681|gb|ELW27329.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|444663608|gb|ELW35825.1| DNA polymerase IV [Escherichia coli PA35]
gi|444668209|gb|ELW40232.1| DNA polymerase IV [Escherichia coli 3.4880]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 185/424 (43%), Gaps = 97/424 (22%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSMRG 70
II HVD+D FY VE R P L +P AV GG L Y AR YGV+ +M G
Sbjct: 92 IIVHVDMDAFYAAVEMRDDPSLLNVPMAV-------GGQSMLSTSNYLARRYGVRAAMPG 144
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDA 129
AK++CPQ+ +V K+ S Y+ V IL+ +DE YLD+T+
Sbjct: 145 FIAKKLCPQLVIV-------KSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYLDITEY 197
Query: 130 -------------------------------AEAM-----------LAETPPESLDEVDE 147
AE++ L + PES E D
Sbjct: 198 VTELMRGKEEQVPVEEENRVTQSFGDSSVENAESLKHSLVHQTDTKLIQIDPESSQETDA 257
Query: 148 EALK-----SHILGLESKDG-----NDSKA-TVKEWLCRCDADHRDKLLACGVLIVTELR 196
+ L+ S+ ++S+ G ND+ + + + +C D + C +V+E+R
Sbjct: 258 KLLQIDDPESYSTDMKSQHGSNESLNDTDSHQIDDLICDSDQCLPNSYWECAEKVVSEIR 317
Query: 197 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL--LDSLPIKKMKQLG 254
++ T+ T SAGIA NKMLAK+AS MNKP Q +P S K L + LPI+K+ +
Sbjct: 318 ERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPIRKVSGI- 376
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDK---LQESYGFNTGTWLWNIARGISGEEVQARLLP 311
GK+ + N LG+ T D+ DK L+ + + + NI GI V +
Sbjct: 377 GKVTEKMLNALGIVTGADIY----DKRGLLRLMFSKCSYDYFMNICLGIGSCTVHSEWER 432
Query: 312 KSHGSGKSFPGPRALKTVASVQHW----LNQLCEELSERLCSDLEQN--KRIAHTLTLHA 365
KS + ++FP W L Q C +L L ++E++ K TL L
Sbjct: 433 KSISTERTFPDI-----------WKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLKT 481
Query: 366 SAFK 369
SAF+
Sbjct: 482 SAFE 485
>gi|297794885|ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
Length = 1105
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 178/424 (41%), Gaps = 76/424 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I H+DLDCF+V V + + +L P AV + KG I+ Y AR YGVK M
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
AKE+CPQ LV VP + +Y + IL R R +A S DE +LD++D
Sbjct: 435 AKELCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD--- 484
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
L +V+ L S I
Sbjct: 485 ----------LRDVEPGFLASTI------------------------------------- 497
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ +
Sbjct: 498 ----RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDGLPVGTLP 553
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 312 KSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 613 KSIGAEVNWGVRFRDQQDVCIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKK 666
Query: 368 FKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 425
K+ + K C R T D + Q ++ GSF + + G +
Sbjct: 667 RKNDAEEPTKYMGCGDCDNLSRSITVPAATDDVEVLQRISKKLFGSFCLDVKEVRGVGLQ 726
Query: 426 ITAL 429
++ L
Sbjct: 727 VSKL 730
>gi|301019119|ref|ZP_07183323.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331661627|ref|ZP_08362550.1| DNA polymerase IV [Escherichia coli TA143]
gi|419917055|ref|ZP_14435335.1| DNA polymerase IV [Escherichia coli KD2]
gi|422330511|ref|ZP_16411528.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|432390183|ref|ZP_19633048.1| DNA polymerase IV [Escherichia coli KTE21]
gi|432769059|ref|ZP_20003434.1| DNA polymerase IV [Escherichia coli KTE50]
gi|432791514|ref|ZP_20025608.1| DNA polymerase IV [Escherichia coli KTE78]
gi|432797481|ref|ZP_20031509.1| DNA polymerase IV [Escherichia coli KTE79]
gi|432959552|ref|ZP_20149930.1| DNA polymerase IV [Escherichia coli KTE202]
gi|433061471|ref|ZP_20248440.1| DNA polymerase IV [Escherichia coli KTE125]
gi|300399378|gb|EFJ82916.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331060049|gb|EGI32013.1| DNA polymerase IV [Escherichia coli TA143]
gi|373248531|gb|EHP67959.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|388394924|gb|EIL56165.1| DNA polymerase IV [Escherichia coli KD2]
gi|430922926|gb|ELC43664.1| DNA polymerase IV [Escherichia coli KTE21]
gi|431319354|gb|ELG07025.1| DNA polymerase IV [Escherichia coli KTE50]
gi|431342310|gb|ELG29289.1| DNA polymerase IV [Escherichia coli KTE78]
gi|431345701|gb|ELG32615.1| DNA polymerase IV [Escherichia coli KTE79]
gi|431479984|gb|ELH59715.1| DNA polymerase IV [Escherichia coli KTE202]
gi|431588521|gb|ELI59795.1| DNA polymerase IV [Escherichia coli KTE125]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|209917444|ref|YP_002291528.1| DNA polymerase IV [Escherichia coli SE11]
gi|209910703|dbj|BAG75777.1| DNA polymerase IV [Escherichia coli SE11]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|82775832|ref|YP_402179.1| DNA polymerase IV [Shigella dysenteriae Sd197]
gi|309786021|ref|ZP_07680650.1| DNA polymerase IV [Shigella dysenteriae 1617]
gi|123563306|sp|Q32J17.1|DPO4_SHIDS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81239980|gb|ABB60690.1| damage-inducible protein P [Shigella dysenteriae Sd197]
gi|308926132|gb|EFP71610.1| DNA polymerase IV [Shigella dysenteriae 1617]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|419862901|ref|ZP_14385473.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
gi|388343966|gb|EIL09864.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 158/349 (45%), Gaps = 67/349 (19%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEA 59
MP S R I HVD+D F+ VEQR +P+LRGLP V+ + G G++A YEA
Sbjct: 1 MPSPLEHSLALRKIIHVDMDAFFAAVEQRDRPELRGLP--VIVGGDPNGRGVVATCSYEA 58
Query: 60 RNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERAS 118
R +G++ +M A+ +CPQ V + + +YR +V++IL + E S
Sbjct: 59 RRFGIRSAMSAARARSLCPQAIFV-------RPRMDAYREVSRQVMTILRSYTALVEPLS 111
Query: 119 IDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDA 178
+DE +LD+T A + DG + +E L R
Sbjct: 112 LDEAFLDVTAA-----------------------------TTDGTLAVEIAREILDRI-- 140
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
HR ET T SAG+++NK+LAKLAS KP +P
Sbjct: 141 -HR--------------------ETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG 179
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L LP+ K+ +G L + +GV TV DL S + L +G +G W +++AR
Sbjct: 180 LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG-KSGGWFYDVAR 237
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
I VQ KS G+ ++F + L+ + ++ L ++ +++ RL
Sbjct: 238 AIDERPVQPSRQRKSVGTERTF--SKNLEDRSVMRTTLQEMAAQVAARL 284
>gi|389601156|ref|XP_001564778.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504922|emb|CAM38849.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 757
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 172/439 (39%), Gaps = 117/439 (26%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IAHVD+DCFY QVE R R P + Q+ G LIAV Y AR GVKR R
Sbjct: 17 RCIAHVDMDCFYAQVEAVRLGLDCRVTPLVLAQW-----GSLIAVNYPARARGVKRFSRV 71
Query: 71 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARKG-- 112
EA+ +CP++ + P R K L YR+A ++ ILA
Sbjct: 72 SEAQALCPELIIALSPSYRMGEATYQYHPHPVPDSYKISLEPYRHASRQIFGILAEAPGV 131
Query: 113 RCERASIDEVYLDLTDAAEAMLAET----PPESLDEVDEEALKSHILGLESKDGNDSKAT 168
+ E+A +DE Y+D+T+AA LAE SLD + + ++ ++ D +A
Sbjct: 132 QVEKAGLDEAYVDVTEAARRELAEVRAAAAGASLDPLVD------VMEPSTRLIEDRRAE 185
Query: 169 VKEWLC--------------------RCDAD-----------------HRDKLLACGVLI 191
++ WLC C A R LL +
Sbjct: 186 MEAWLCARGTSLAAVFDEPMRALVRGECGAGLEGSRAFCVGADDPAYAERCLLLCAASRV 245
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
V LR ++ E + CSAGIAHN++LAK S +KP QQT + L LP+ ++
Sbjct: 246 VHRLRQRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRGASALFELPLSGLR 305
Query: 252 QLGGKLGTSLQNELGVTT---------VGDLLKFS------------------------- 277
GGKLG ++ G T + L K
Sbjct: 306 GFGGKLGAAVSVVCGGVTECREAWLVPLAQLYKLDGTHDAGVGADAEEDGERRKGRPLAR 365
Query: 278 ----------EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 327
E Q T +++ + RG + V R L KS + K+F R
Sbjct: 366 KRRRTALSSLERDHQGLVAHTTSEYVFYLLRGFGEDTVSNRPLSKSIIASKNF--GRITT 423
Query: 328 TVASVQHWLNQLCEELSER 346
+V V+ W+ L EL R
Sbjct: 424 SVEVVRSWVTVLASELCSR 442
>gi|419923466|ref|ZP_14441411.1| DNA polymerase IV [Escherichia coli 541-15]
gi|388393729|gb|EIL55084.1| DNA polymerase IV [Escherichia coli 541-15]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGMRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432541635|ref|ZP_19778496.1| DNA polymerase IV [Escherichia coli KTE236]
gi|432546975|ref|ZP_19783773.1| DNA polymerase IV [Escherichia coli KTE237]
gi|432620356|ref|ZP_19856404.1| DNA polymerase IV [Escherichia coli KTE76]
gi|432813757|ref|ZP_20047568.1| DNA polymerase IV [Escherichia coli KTE115]
gi|431078152|gb|ELD85210.1| DNA polymerase IV [Escherichia coli KTE236]
gi|431085457|gb|ELD91562.1| DNA polymerase IV [Escherichia coli KTE237]
gi|431163277|gb|ELE63711.1| DNA polymerase IV [Escherichia coli KTE76]
gi|431368776|gb|ELG55007.1| DNA polymerase IV [Escherichia coli KTE115]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 161/355 (45%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 61 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E D T++E
Sbjct: 114 ----------PKS--------------GIEL--ATDIARTIRE----------------- 130
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V+ L LP+
Sbjct: 131 ---------QIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVEAFLTPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+A
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEAD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L++ +L+E+ + + +R+ HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLLLED-------LSEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|350400596|ref|XP_003485892.1| PREDICTED: DNA polymerase iota-like [Bombus impatiens]
Length = 565
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 171/379 (45%), Gaps = 38/379 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY Q+E + P+L+G P V Q + ++ Y AR +G+K+ M
Sbjct: 14 RTIIHIDVDCFYAQIEMLRHPELQGKPLGVQQKSI-----VVTSNYLAREHGIKKCMSVQ 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA ++CP + LV DL++YR+ ++V+ IL + ER +D+ ++D+T
Sbjct: 69 EALQLCPGLVLV------NGEDLTNYRHYSAKVLEILHQFTPLVERLGLDDNFMDVTSIV 122
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT--VKEWLCRCDADHRDKLLACG 188
+ + L+ L + +D N E C C R L
Sbjct: 123 QKYMNSGNNSELN-----------LSINMEDENPVGKVFGTSEEECPCGCHAR---LIIA 168
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PI 247
I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QT V S L ++ +
Sbjct: 169 SKIAAEIRKRIYKDLHITCSAGIAHNKLLAKLVGSLHKPNHQTLVFPCSAPMFLSTIGSV 228
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G K L + + TV DL K + L+ G + L + A GI V+
Sbjct: 229 SKIPGVGQKTAQLLISN-NIKTVDDLRKTPLETLEMKIGIDLARKLKDNAEGIDETVVKP 287
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+S G F +++ VA V+ L L L+E D IA LT+
Sbjct: 288 TGKRQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPIAMRLTVRKHD 342
Query: 368 FKSSDSDSRKKFPSKSCPL 386
F S R+ ++ C L
Sbjct: 343 FNKPTSGKRE---TRQCAL 358
>gi|157159715|ref|YP_001457033.1| DNA polymerase IV [Escherichia coli HS]
gi|193068712|ref|ZP_03049673.1| DNA polymerase IV [Escherichia coli E110019]
gi|293413508|ref|ZP_06656157.1| DNA polymerase IV [Escherichia coli B185]
gi|293418349|ref|ZP_06660784.1| DNA polymerase IV [Escherichia coli B088]
gi|300817250|ref|ZP_07097468.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|300919512|ref|ZP_07136010.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|307313500|ref|ZP_07593121.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|309797859|ref|ZP_07692241.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|331651165|ref|ZP_08352190.1| DNA polymerase IV [Escherichia coli M718]
gi|378714319|ref|YP_005279212.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|386607643|ref|YP_006123129.1| DNA polymerase IV [Escherichia coli W]
gi|386702925|ref|YP_006166762.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|386708073|ref|YP_006171794.1| DNA polymerase IV [Escherichia coli W]
gi|415832818|ref|ZP_11518094.1| DNA polymerase IV [Escherichia coli OK1357]
gi|415879827|ref|ZP_11544933.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|417152597|ref|ZP_11991388.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|417223813|ref|ZP_12027104.1| DNA polymerase IV [Escherichia coli 96.154]
gi|417229975|ref|ZP_12031561.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|417579476|ref|ZP_12230299.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|417600528|ref|ZP_12251113.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|417665320|ref|ZP_12314888.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|419343913|ref|ZP_13885297.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|419348344|ref|ZP_13889697.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|419353246|ref|ZP_13894532.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|419358592|ref|ZP_13899823.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|419363726|ref|ZP_13904908.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|422352008|ref|ZP_16432809.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|432479586|ref|ZP_19721551.1| DNA polymerase IV [Escherichia coli KTE210]
gi|432532438|ref|ZP_19769444.1| DNA polymerase IV [Escherichia coli KTE234]
gi|432677848|ref|ZP_19913277.1| DNA polymerase IV [Escherichia coli KTE142]
gi|432804333|ref|ZP_20038279.1| DNA polymerase IV [Escherichia coli KTE91]
gi|432932589|ref|ZP_20132443.1| DNA polymerase IV [Escherichia coli KTE184]
gi|433090597|ref|ZP_20276906.1| DNA polymerase IV [Escherichia coli KTE138]
gi|433192067|ref|ZP_20376097.1| DNA polymerase IV [Escherichia coli KTE90]
gi|450185316|ref|ZP_21889033.1| DNA polymerase IV [Escherichia coli SEPT362]
gi|189027663|sp|A7ZWJ6.1|DPO4_ECOHS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157065395|gb|ABV04650.1| DNA polymerase IV [Escherichia coli HS]
gi|192958075|gb|EDV88517.1| DNA polymerase IV [Escherichia coli E110019]
gi|291324877|gb|EFE64292.1| DNA polymerase IV [Escherichia coli B088]
gi|291433566|gb|EFF06539.1| DNA polymerase IV [Escherichia coli B185]
gi|300413406|gb|EFJ96716.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|300530226|gb|EFK51288.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|306906668|gb|EFN37179.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|308118543|gb|EFO55805.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|315059560|gb|ADT73887.1| DNA polymerase IV [Escherichia coli W]
gi|323181566|gb|EFZ66986.1| DNA polymerase IV [Escherichia coli OK1357]
gi|323379880|gb|ADX52148.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|324019872|gb|EGB89091.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|331050906|gb|EGI22958.1| DNA polymerase IV [Escherichia coli M718]
gi|342926640|gb|EGU95362.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|345344343|gb|EGW76716.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|345353873|gb|EGW86100.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|378190412|gb|EHX50996.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|378204006|gb|EHX64422.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|378208157|gb|EHX68541.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|378209163|gb|EHX69537.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|378219746|gb|EHX80013.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|383394452|gb|AFH19410.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|383403765|gb|AFH10008.1| DNA polymerase IV [Escherichia coli W]
gi|386169321|gb|EIH35829.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|386198861|gb|EIH97852.1| DNA polymerase IV [Escherichia coli 96.154]
gi|386206465|gb|EII10971.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|397787111|gb|EJK97941.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|431010603|gb|ELD24947.1| DNA polymerase IV [Escherichia coli KTE210]
gi|431064614|gb|ELD73479.1| DNA polymerase IV [Escherichia coli KTE234]
gi|431207759|gb|ELF06005.1| DNA polymerase IV [Escherichia coli KTE142]
gi|431357666|gb|ELG44332.1| DNA polymerase IV [Escherichia coli KTE91]
gi|431456622|gb|ELH36965.1| DNA polymerase IV [Escherichia coli KTE184]
gi|431615609|gb|ELI84735.1| DNA polymerase IV [Escherichia coli KTE138]
gi|431722666|gb|ELJ86631.1| DNA polymerase IV [Escherichia coli KTE90]
gi|449325289|gb|EMD15201.1| DNA polymerase IV [Escherichia coli SEPT362]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|425303750|ref|ZP_18693556.1| DNA polymerase IV [Escherichia coli N1]
gi|408232494|gb|EKI55692.1| DNA polymerase IV [Escherichia coli N1]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPYLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|386617769|ref|YP_006137349.1| DNA polymerase IV [Escherichia coli NA114]
gi|387828289|ref|YP_003348226.1| DNA polymerase IV [Escherichia coli SE15]
gi|432396106|ref|ZP_19638898.1| DNA polymerase IV [Escherichia coli KTE25]
gi|432420390|ref|ZP_19662948.1| DNA polymerase IV [Escherichia coli KTE178]
gi|432498522|ref|ZP_19740302.1| DNA polymerase IV [Escherichia coli KTE216]
gi|432557297|ref|ZP_19793990.1| DNA polymerase IV [Escherichia coli KTE49]
gi|432693062|ref|ZP_19928277.1| DNA polymerase IV [Escherichia coli KTE162]
gi|432709111|ref|ZP_19944180.1| DNA polymerase IV [Escherichia coli KTE6]
gi|432721852|ref|ZP_19956780.1| DNA polymerase IV [Escherichia coli KTE17]
gi|432726347|ref|ZP_19961230.1| DNA polymerase IV [Escherichia coli KTE18]
gi|432740031|ref|ZP_19974753.1| DNA polymerase IV [Escherichia coli KTE23]
gi|432917226|ref|ZP_20121880.1| DNA polymerase IV [Escherichia coli KTE173]
gi|432924504|ref|ZP_20126791.1| DNA polymerase IV [Escherichia coli KTE175]
gi|432979781|ref|ZP_20168562.1| DNA polymerase IV [Escherichia coli KTE211]
gi|432989343|ref|ZP_20178013.1| DNA polymerase IV [Escherichia coli KTE217]
gi|433095136|ref|ZP_20281354.1| DNA polymerase IV [Escherichia coli KTE139]
gi|433104413|ref|ZP_20290436.1| DNA polymerase IV [Escherichia coli KTE148]
gi|433109432|ref|ZP_20295314.1| DNA polymerase IV [Escherichia coli KTE150]
gi|281177446|dbj|BAI53776.1| DNA polymerase IV [Escherichia coli SE15]
gi|333968270|gb|AEG35075.1| DNA polymerase IV [Escherichia coli NA114]
gi|430918488|gb|ELC39489.1| DNA polymerase IV [Escherichia coli KTE25]
gi|430947555|gb|ELC67252.1| DNA polymerase IV [Escherichia coli KTE178]
gi|431032116|gb|ELD44827.1| DNA polymerase IV [Escherichia coli KTE216]
gi|431094350|gb|ELD99981.1| DNA polymerase IV [Escherichia coli KTE49]
gi|431237204|gb|ELF32204.1| DNA polymerase IV [Escherichia coli KTE162]
gi|431252832|gb|ELF46346.1| DNA polymerase IV [Escherichia coli KTE6]
gi|431268597|gb|ELF60066.1| DNA polymerase IV [Escherichia coli KTE17]
gi|431276455|gb|ELF67475.1| DNA polymerase IV [Escherichia coli KTE18]
gi|431286160|gb|ELF76986.1| DNA polymerase IV [Escherichia coli KTE23]
gi|431447878|gb|ELH28598.1| DNA polymerase IV [Escherichia coli KTE173]
gi|431450145|gb|ELH30637.1| DNA polymerase IV [Escherichia coli KTE175]
gi|431496402|gb|ELH75985.1| DNA polymerase IV [Escherichia coli KTE211]
gi|431498588|gb|ELH77773.1| DNA polymerase IV [Escherichia coli KTE217]
gi|431620014|gb|ELI88902.1| DNA polymerase IV [Escherichia coli KTE139]
gi|431632438|gb|ELJ00726.1| DNA polymerase IV [Escherichia coli KTE150]
gi|431634437|gb|ELJ02678.1| DNA polymerase IV [Escherichia coli KTE148]
Length = 351
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|187733383|ref|YP_001879027.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
gi|226738240|sp|B2U3S3.1|DPO4_SHIB3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187430375|gb|ACD09649.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
Length = 354
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 149/342 (43%), Gaps = 73/342 (21%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 7 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 66 LKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 117
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
C A LI
Sbjct: 118 -----------------------------------------CHGSA----------TLIA 126
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 127 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 186
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L K
Sbjct: 187 V-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRK 244
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
S G ++ + HW CE + ERL +LE+
Sbjct: 245 SVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>gi|416293780|ref|ZP_11650545.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|420323949|ref|ZP_14825736.1| DNA polymerase IV [Shigella flexneri CCH060]
gi|320186906|gb|EFW61624.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|391257297|gb|EIQ16415.1| DNA polymerase IV [Shigella flexneri CCH060]
Length = 350
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 149/342 (43%), Gaps = 73/342 (21%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 3 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 61
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 LKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 113
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
C A LI
Sbjct: 114 -----------------------------------------CHGSA----------TLIA 122
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 QEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 182
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L K
Sbjct: 183 V-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRK 240
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
S G ++ + HW CE + ERL +LE+
Sbjct: 241 SVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 143/333 (42%), Gaps = 68/333 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P LRG P AV + G + A YEAR YGV+ +M
Sbjct: 10 RRIVHVDMDAFYASVEQRDDPALRGKPVAV---GGIQRGVVAAASYEARRYGVRSAMPSM 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A +CP + V K YR +V +I A E S+DE YLDLTD
Sbjct: 67 RAMRLCPDLIFV-------KPRFDVYRAVSQQVRAIFAEYTPLVEPLSLDEAYLDLTD-- 117
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
H+ N S AT
Sbjct: 118 ----------------------HL--------NGSTAT---------------------R 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ + T T SAG+++NK LAKLAS KP +P + + LPI +
Sbjct: 127 IAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGAEFVQGLPIGRF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G ++ G+ T DL + S D L +G +G + WNI+RGI EV+ +
Sbjct: 187 HGIGPATAARMEAH-GILTGADLARQSLDFLTARFG-KSGAYYWNISRGIDTREVKPDRI 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS G+ ++ L+ +A+ L L +++
Sbjct: 245 RKSIGAENTY--FEDLRDIAAAHEALAVLADKV 275
>gi|419699174|ref|ZP_14226796.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|422378507|ref|ZP_16458714.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|432731001|ref|ZP_19965840.1| DNA polymerase IV [Escherichia coli KTE45]
gi|432758061|ref|ZP_19992584.1| DNA polymerase IV [Escherichia coli KTE46]
gi|324010201|gb|EGB79420.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|380349696|gb|EIA37962.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|431278405|gb|ELF69395.1| DNA polymerase IV [Escherichia coli KTE45]
gi|431311847|gb|ELF99994.1| DNA polymerase IV [Escherichia coli KTE46]
Length = 351
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERAVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300902538|ref|ZP_07120515.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|301302018|ref|ZP_07208151.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|415865924|ref|ZP_11538633.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|417168586|ref|ZP_12001037.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|417637524|ref|ZP_12287701.1| DNA polymerase IV [Escherichia coli TX1999]
gi|419168270|ref|ZP_13712668.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|419179263|ref|ZP_13722888.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|419186030|ref|ZP_13729551.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|419190061|ref|ZP_13733529.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|420383905|ref|ZP_14883294.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|427803303|ref|ZP_18970370.1| damage-inducible protein P [Escherichia coli chi7122]
gi|427807907|ref|ZP_18974972.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|432452995|ref|ZP_19695240.1| DNA polymerase IV [Escherichia coli KTE193]
gi|433031645|ref|ZP_20219465.1| DNA polymerase IV [Escherichia coli KTE112]
gi|433128532|ref|ZP_20314017.1| DNA polymerase IV [Escherichia coli KTE163]
gi|433133434|ref|ZP_20318817.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443616243|ref|YP_007380099.1| DNA polymerase IV [Escherichia coli APEC O78]
gi|300405351|gb|EFJ88889.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|300842570|gb|EFK70330.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|315253713|gb|EFU33681.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|345395654|gb|EGX25396.1| DNA polymerase IV [Escherichia coli TX1999]
gi|378018676|gb|EHV81522.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|378027724|gb|EHV90349.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|378031454|gb|EHV94042.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|378042164|gb|EHW04613.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|386170634|gb|EIH42687.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|391309729|gb|EIQ67394.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|412961485|emb|CCK45390.1| damage-inducible protein P [Escherichia coli chi7122]
gi|412968086|emb|CCJ42699.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|430974983|gb|ELC91888.1| DNA polymerase IV [Escherichia coli KTE193]
gi|431560897|gb|ELI34402.1| DNA polymerase IV [Escherichia coli KTE112]
gi|431652088|gb|ELJ19251.1| DNA polymerase IV [Escherichia coli KTE163]
gi|431663249|gb|ELJ30011.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443420751|gb|AGC85655.1| DNA polymerase IV [Escherichia coli APEC O78]
Length = 351
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 163/375 (43%), Gaps = 75/375 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P LRG P AV + A YEAR +GV+ +M G
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPDLRGKPIAVGGGGKRGVVS--AASYEARVFGVRSAMSGA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+A+ +CP++ V K + + Y+ ++ I + E S+DE YLD+T
Sbjct: 66 QAQRLCPELIFV-------KTNFTRYKECSQQIREIFYEYTDKVEPLSLDEAYLDVT--- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+K GN S L
Sbjct: 116 ---------------------------ENKKGNPS----------------------ATL 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L++L I+K
Sbjct: 127 IAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINPEEVIPFLETLDIRKF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ G+ T DL S + L+E +G +GT+ ++I RGI EV
Sbjct: 187 YGI-GKVTAEKMYLHGIFTGNDLKSKSLEYLEEHFG-KSGTYYYHIVRGIHNSEV----- 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
K H + KS R + + ++ + E ++E + LE++ T+TL K
Sbjct: 240 -KPHRTRKSLGAERTFSENITSELFMMERLEHIAEEIERRLEKSNVAGKTVTL-----KI 293
Query: 371 SDSDSRKKFPSKSCP 385
SD + SK+ P
Sbjct: 294 KYSDFTLQTRSKTLP 308
>gi|332281409|ref|ZP_08393822.1| DNA polymerase IV [Shigella sp. D9]
gi|417627167|ref|ZP_12277415.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|432748683|ref|ZP_19983307.1| DNA polymerase IV [Escherichia coli KTE29]
gi|332103761|gb|EGJ07107.1| DNA polymerase IV [Shigella sp. D9]
gi|345378609|gb|EGX10537.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|431300789|gb|ELF90337.1| DNA polymerase IV [Escherichia coli KTE29]
Length = 351
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 170/385 (44%), Gaps = 85/385 (22%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLIAVG-YEARN 61
D R I H+D+D FY VEQ P LRG P AV GG G++A YEAR
Sbjct: 3 DVPTYRKIIHIDMDAFYASVEQMDNPALRGKPLAV-------GGSENRGVVAAASYEARK 55
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASID 120
+GV+ ++ G AK+ CP+I V R + D Y+ S++ I E S+D
Sbjct: 56 FGVRSAISGVLAKKYCPEIIFV-----RPRFD--RYKEISSKIHKIFHEYTDLVEPLSLD 108
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
E YLD+T ++K GN S +
Sbjct: 109 EAYLDVT------------------------------QNKKGNPSAS------------- 125
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
L+ E+R ++ E T SAGI+ NK +AK+AS +NKP Q TV +
Sbjct: 126 ---------LLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNPDEIIP 176
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L+ LPI+K + GK+ T +LG+ T DL S + L++ +G +G + +++ RGI
Sbjct: 177 FLEELPIRKFYGV-GKVTTEKMYQLGIFTGSDLKSKSLEFLEKHFG-KSGAFYYSVVRGI 234
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
EV+ + KS + +F ++S L QL ER+ LE+ + H
Sbjct: 235 HNSEVKPHRITKSVAAEHTFD-----VNLSSEIFMLEQL-----ERIAVSLEKRLK-RHN 283
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCP 385
++ K SD ++ SK+ P
Sbjct: 284 VSGKTVTLKIKYSDFTQQTRSKTLP 308
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 178/384 (46%), Gaps = 83/384 (21%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARN 61
DS R I H+D+D FY VEQ P LRG AV GG G++ A YEAR
Sbjct: 3 DSPIYRKIIHIDMDAFYASVEQMDNPALRGKAIAV-------GGSENRGVVSAASYEARK 55
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDE 121
+GV+ ++ G AK+ CP+I V+ R K ++S+ I E
Sbjct: 56 FGVRSAISGVLAKKYCPEIIFVRPRFDRYK-EIST---------------------KIHE 93
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
++ + TD E P SLDE +++ ++K GN S +
Sbjct: 94 IFHEYTDMVE-------PLSLDE-------AYLDVTQNKKGNPSAS-------------- 125
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
L+ E+R+++ E T SAGI+ NK +AK+AS NKP Q TV V
Sbjct: 126 --------LLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNPDEVIPF 177
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L+ LPI+K + GK+ T +LG+ T DL S + L++ +G +G + +N+ RGI
Sbjct: 178 LEELPIRKFYGV-GKVTTEKMYQLGIFTGLDLKSKSVEFLEKHFG-KSGGFYFNVVRGIH 235
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
EV+A + KS + +F ++S L QL E+++ L L++ + T+
Sbjct: 236 NSEVKASRITKSVAAEHTFD-----VNLSSEIFMLEQL-EKIAVSLEKRLKKYNILGKTV 289
Query: 362 TLHASAFKSSDSDSRKKFPSKSCP 385
TL K SD ++ SK+ P
Sbjct: 290 TL-----KIKYSDFTQQTRSKTLP 308
>gi|326800591|ref|YP_004318410.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551355|gb|ADZ79740.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 354
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 158/360 (43%), Gaps = 83/360 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYGVK 65
R I HVD+D FY VEQR P RG+P V GG G++A YEAR YG+
Sbjct: 4 RKIIHVDMDAFYASVEQRDNPTYRGIPIVV-------GGQPDQRGVVATASYEARAYGIH 56
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYL 124
+M +A+++CPQ+ V + Y++ +++ SI R E S+DE YL
Sbjct: 57 SAMSSRKAQQLCPQVLFV-------RPRFEVYKSVSNQIRSIFHRYTDIIEPLSLDEAYL 109
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+++ DKL
Sbjct: 110 DVSE-----------------------------------------------------DKL 116
Query: 185 -LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
+ + I E++ + E T SAG++ NK +AK+AS MNKP T + S ++ ++
Sbjct: 117 GIGSAIEIAKEIKNAIRTELHLTASAGVSTNKFVAKIASDMNKPDGLTFIGPSRIEAFIE 176
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
+LPI+K + GK+ N L + DL K S+D L +G G + +NI RGI
Sbjct: 177 ALPIQKFYGI-GKVTAKKMNSLQIYKGADLKKLSKDHLLNLFG-KVGNFYYNIVRGIDER 234
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
VQ KS G+ +F + Q + +L + +++R+ LE + + TLTL
Sbjct: 235 PVQTFRELKSIGAEDTFTS-----DLMEEQELIMEL-KLIAQRVVKRLEAKQVLGSTLTL 288
>gi|170067256|ref|XP_001868410.1| DNA polymerase IV [Culex quinquefasciatus]
gi|167863443|gb|EDS26826.1| DNA polymerase IV [Culex quinquefasciatus]
Length = 647
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 167/370 (45%), Gaps = 30/370 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H+D+D +Y QVE+ P L+ P + Q ++ Y AR +G+K+
Sbjct: 21 RVIIHIDMDYYYAQVEEVLDPSLKDKPVGIKQRFH-----VVTSNYVAREFGIKKMTLIT 75
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+++CP++ LV D+S Y+ + + I+ + G E+ +DE YLD+T
Sbjct: 76 EARKLCPELVLVD------GEDISKYKQMSARINEIMHKFSGNVEKLGLDENYLDVTKEI 129
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESK--DGNDSKATVKEWLCRCDADHRDKLLACG 188
E L++ E L + G +G S+ C C D R L G
Sbjct: 130 S--------EQLEQGVEAGLLDRVEGYVYPPLEGGCSEREAFRRACGCGCDRR---LILG 178
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PI 247
+ E+R + +E C AG+AHNK+LAKL +NK +QT + + L SL +
Sbjct: 179 THMAKEIRDCIARELGLKCCAGVAHNKLLAKLVGSVNKQNKQTVLLPNCGSSFLASLGSV 238
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K + +G K L+ E+GV TV DL + S +KL + G L IA G V+A
Sbjct: 239 KALTGIGEKTAEILE-EVGVKTVRDLQETSVEKLAKRLGLEQAGRLKEIAFGKDDTPVKA 297
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
PKS G S P A+ A + L L + + D I T+ H S
Sbjct: 298 TGKPKSVGLEDSCP---AISIRADAEDKFRHLIVRLVKNIAEDGRIPIAIKVTIRKHDSV 354
Query: 368 FKSSDSDSRK 377
++S + ++
Sbjct: 355 RRTSHRECKQ 364
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 148/339 (43%), Gaps = 73/339 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG---GLIAVG-YEARNYGVKRS 67
R I H+D+D FY VEQR P+L+G P AV GG G++A YEAR YGV+ +
Sbjct: 6 RKIIHIDMDAFYASVEQRDFPELKGKPVAV-------GGEHRGVVAAASYEARKYGVRSA 58
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M AK+ CPQI V K Y+ ++ +I + + T
Sbjct: 59 MSSVVAKKKCPQIIFV-------KPRFHRYKEISEQIRAI---------------FFEYT 96
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D E P SLDE D H K +
Sbjct: 97 DLVE-------PLSLDE-----------------------------AYLDVTHNKKGIDS 120
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L++LPI
Sbjct: 121 ANLIAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLENLPI 180
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ +G + +LG+ DL + S + L +G G ++I RGI EV+
Sbjct: 181 ERFYGIGNVTANKMY-QLGIYKGKDLKEKSLEYLITHFG-KMGRHYYDIVRGIHRSEVKP 238
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 346
+ KS G ++ + T + L +L +EL ER
Sbjct: 239 HRIAKSVGVEHTYADD--IDTEKDIDQQLIRLAQELYER 275
>gi|407842286|gb|EKG01044.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 169/381 (44%), Gaps = 51/381 (13%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I H+D+DCFY QVE R R P + Q+ G LIAV Y AR G+ R
Sbjct: 2 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 56
Query: 71 DEAKEVCPQIELVQVPV-------------ARG---KADLSSYRNAGSEVVSIL-ARKG- 112
++A+E CP +++ V AR K L YR A ++ +IL + +G
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN---DSKATV 169
E+ S+DE YLD+T AA+ LA + SH+ + + N D +A +
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI------RLPSAQCSSHLEDVMHPETNVIPDRRAEI 170
Query: 170 KEWLCR---------------CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 214
WL D LL +V +LR ++ +E + CSAGIAHN
Sbjct: 171 DAWLFEKGKEFNEIFDTALHPHDTVEHQLLLGAASRVVWKLREKIYQELCYDCSAGIAHN 230
Query: 215 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGDL 273
K+LAK S +KP QQT + V + P + ++ GGK G S+ G D
Sbjct: 231 KILAKSISSRHKPNQQTLLLPDRVASAVWDAPYQSIRGFGGKFGESVFRACGNAELFRDA 290
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+KLQ G + GT+ + R E+++ + + K+ + KSF P + + ++
Sbjct: 291 WLVPLEKLQSVLGVDDGTYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPTS--SSEGLR 348
Query: 334 HWLNQLCEELSERLCSDLEQN 354
W+ L EL R E N
Sbjct: 349 KWITVLSSELCARYKEFCETN 369
>gi|416286267|ref|ZP_11648245.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|420345344|ref|ZP_14846777.1| DNA polymerase IV [Shigella boydii 965-58]
gi|320178933|gb|EFW53895.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|391276627|gb|EIQ35396.1| DNA polymerase IV [Shigella boydii 965-58]
Length = 350
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 149/342 (43%), Gaps = 73/342 (21%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 3 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMA 61
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 LKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH- 113
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
C A LI
Sbjct: 114 -----------------------------------------CHGSA----------TLIA 122
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 QEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 182
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L K
Sbjct: 183 V-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRK 240
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
S G ++ + HW CE + ERL +LE+
Sbjct: 241 SVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|91086917|ref|XP_971585.1| PREDICTED: similar to DNA polymerase iota [Tribolium castaneum]
gi|270009670|gb|EFA06118.1| hypothetical protein TcasGA2_TC008961 [Tribolium castaneum]
Length = 537
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 143/307 (46%), Gaps = 37/307 (12%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+R I H+DLDCFY QVE K P LR +P + Q N ++ Y AR +G+K+ M
Sbjct: 8 SRTIIHIDLDCFYAQVEMNKNPSLRTVPLGIQQKN-----IVVTSNYTAREFGIKKCMLI 62
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
EAK++CP + LV DL YR +V ++L + ER +DE YLD+T
Sbjct: 63 PEAKKLCPSLVLV------NGEDLHDYRQTSYKVTNLLQKYTPLVERLGLDENYLDVTTL 116
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E L++ + L ++ G D +D C C R L
Sbjct: 117 IN--------EKLNQKSDLKLVGNVFG----DTSDK--------CECGCTER---LIIAT 153
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PFSSVKGLLDSLPIK 248
+ E+R + E T AGIAHNK+LAK+A +KP QQT V P S+++ +L
Sbjct: 154 TVAQEIRDVIKSELNLTSCAGIAHNKLLAKIAGARHKPNQQTVVFPNSALELILSLNAPN 213
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
+ +G L L+ +GV T+ +L +L+ G + + ++ GI V+
Sbjct: 214 DIPGIGRALFEQLKC-IGVETIEELQNVDLKRLETVLGQDKAKLVHELSLGIDKSGVKPT 272
Query: 309 LLPKSHG 315
P+S G
Sbjct: 273 GKPQSIG 279
>gi|419134618|ref|ZP_13679427.1| DNA polymerase IV [Escherichia coli DEC5E]
gi|377988341|gb|EHV51519.1| DNA polymerase IV [Escherichia coli DEC5E]
Length = 351
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L + P+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTFPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 162/357 (45%), Gaps = 78/357 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I H+D+D FY VEQ P+LRG AV GGG + YEAR +GV+
Sbjct: 3 RKIIHIDMDAFYASVEQLDYPELRGKAIAV-------GGGEPRGVVATASYEARKFGVRS 55
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
++ G +A+++CP + V+ R K R E + E S+DE YLD+
Sbjct: 56 AISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAYLDV 109
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T +K GN S
Sbjct: 110 T------------------------------VNKKGNPS--------------------- 118
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L
Sbjct: 119 -ATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLDRLD 177
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
++K + GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 178 VRKFYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRSEVQ 235
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G+ ++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 236 PFRIRKSVGAEETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 286
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 159/354 (44%), Gaps = 71/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
R I H+D+D FY VEQR P+LRG P AV G G++A YEAR YGVK +M
Sbjct: 5 RKIIHLDMDAFYASVEQRDFPELRGKPLAV--GGSPDGRGVVATASYEARKYGVKSAMSS 62
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+A ++CPQ+ R + D+ Y+ ++ I R E S+DE YLD+T
Sbjct: 63 RQALQLCPQLIF-----TRPRFDV--YKEVSQQIRQIFLRYTDLIEPLSLDEAYLDVT-- 113
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E K G + +
Sbjct: 114 ----------------------------EDKQG----------------------IGSAI 123
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +++ ++ +E T SAG++ NK +AK+AS +NKP T + S V ++ LPI+K
Sbjct: 124 DIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEHLPIEK 183
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ GK+ S +LG+ D+ +++++ L +G TG + +NI RG+ VQ
Sbjct: 184 FFGV-GKVTASKMKKLGIHRGADMKQWTQEALTRHFG-KTGKFFYNIVRGVDNRPVQPNR 241
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS +F + +A +Q L + +ELS RL L + T+TL
Sbjct: 242 QTKSISVEDTFA-----QDIADLQ-VLEDILKELSGRLAKRLNAKQLAGKTVTL 289
>gi|215485381|ref|YP_002327812.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312964711|ref|ZP_07778962.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|417754070|ref|ZP_12402165.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|418995265|ref|ZP_13542884.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|419000425|ref|ZP_13547987.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|419005962|ref|ZP_13553418.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|419011786|ref|ZP_13559154.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|419016730|ref|ZP_13564056.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|419022310|ref|ZP_13569558.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|419027236|ref|ZP_13574436.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|419033383|ref|ZP_13580481.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|419038018|ref|ZP_13585078.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
gi|215263453|emb|CAS07774.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312290732|gb|EFR18610.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|377850207|gb|EHU15174.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|377850763|gb|EHU15718.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|377853915|gb|EHU18805.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|377864039|gb|EHU28837.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|377866704|gb|EHU31468.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|377868792|gb|EHU33519.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|377879016|gb|EHU43589.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|377883802|gb|EHU48320.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|377885738|gb|EHU50229.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|377898262|gb|EHU62622.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
Length = 351
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YL++TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLEVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|319941596|ref|ZP_08015921.1| DNA polymerase IV [Sutterella wadsworthensis 3_1_45B]
gi|319804898|gb|EFW01744.1| DNA polymerase IV [Sutterella wadsworthensis 3_1_45B]
Length = 372
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 156/353 (44%), Gaps = 70/353 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR +P+LRG P AV + + G + YEAR YGV +M
Sbjct: 14 RRIVHVDMDAFYASVEQRDRPELRGKPIAVGHAD--RRGVVATASYEARPYGVHSAMPSS 71
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+AK +CP + V+ +S YR +E+ +I R E SIDE YLD+TD
Sbjct: 72 KAKMLCPHLIFVE-------GRMSRYREVSAEIRAIFHRYTDLVEPISIDEAYLDVTD-- 122
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ LG+E+ G
Sbjct: 123 ----------------------NKLGIET----------------------------GTE 132
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ ++ +L+ET T SAG+++NK LAK+AS KP T+ + +D+LPI+
Sbjct: 133 VARRIKADILRETSLTASAGVSYNKFLAKIASDWRKPDGLCTIHPDRAQSFIDALPIEAF 192
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + +GVT +L + S +L + +G G+ + ARGI V+
Sbjct: 193 WGVGPATAKRFRG-IGVTNGWELRQLSFRRLTDQFG-AAGSIFYKFARGIDLRPVRPFRE 250
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G ++F LK + L ++ EL +R ++N I TLTL
Sbjct: 251 RKSVGCEETFADD--LKHPDRLAAALYEIAVELEKR----RDKNGFIGRTLTL 297
>gi|395749898|ref|XP_003779026.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Pongo abelii]
Length = 703
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 168/381 (44%), Gaps = 50/381 (13%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+S +R+I HVDLDCFY QVE P+L+ P L EAR GVK+
Sbjct: 49 NSSSRVIVHVDLDCFYAQVEMISNPELKDKP-------------LGNCTIEARKLGVKKL 95
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M + KE CPQ+ LV D + YR +V +L ER DE ++DL
Sbjct: 96 MNVRDXKEKCPQLVLV------NGEDXTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 149
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + DE+ + H+ +S + +D L
Sbjct: 150 TEMVEKRLQQL---QSDELSVMTVSGHVYNNQSINLHDILHI---------------RLL 191
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 245
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 192 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 251
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 252 HIKEIPGIGYKTAKCLE-VLGISSVHDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 310
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 311 IPSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 363
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
+ S R+ S+ CP+
Sbjct: 364 RRYSSEKHYGRE---SRQCPI 381
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 165/372 (44%), Gaps = 79/372 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG----LIAVGYEARNYGVKRS 67
R I HVD+D FY VEQ P+LRG P AV GGG + A YEAR +GV+ +
Sbjct: 5 RKIIHVDMDAFYASVEQHDHPELRGKPVAV-------GGGQYGVVAAASYEARKFGVRSA 57
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M G A E CP + +V+ R K R+ +E ++ E S+DE YLD+T
Sbjct: 58 MPGRLALEKCPHLIVVKPRFQRYKEISQQIRSIFNEYTDLV------EPLSLDEAYLDVT 111
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + G+ES ND
Sbjct: 112 ENKK------------------------GIES--AND----------------------- 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I E+R ++ +ET T SAGI+ NK LAK+AS NKP Q T+ + + ++ LPI
Sbjct: 123 ---IAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIHPTQILEFMEELPI 179
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K + GK+ + +E+ + DL S ++L +G +G + +N+ RGI EV+
Sbjct: 180 EKFYGI-GKVTANKMHEMHIFKGADLKNKSLEELIRLFG-KSGNYYYNVVRGIHNSEVKP 237
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS ++F L V L + EEL ERL + K I TL +
Sbjct: 238 HRIQKSVAVEETFWD--NLLDEEQVFAQLKTISEELEERLLKKEIKGKSI--TLKIKYKD 293
Query: 368 F----KSSDSDS 375
F +S+ DS
Sbjct: 294 FTQYTRSTTRDS 305
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 158/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GIE--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L SLP+
Sbjct: 124 --IARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLSLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|425420882|ref|ZP_18802115.1| DNA polymerase IV [Escherichia coli 0.1288]
gi|408348030|gb|EKJ62165.1| DNA polymerase IV [Escherichia coli 0.1288]
Length = 351
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQILPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 154/360 (42%), Gaps = 75/360 (20%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGV 64
D + R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV
Sbjct: 21 DMTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGV 76
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVY 123
+ +M A+ +CP + + VP D + Y+ +V +I R E S+DE Y
Sbjct: 77 RSAMPAVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAY 129
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
LD+T E K G
Sbjct: 130 LDVT------------------------------EPKSG--------------------- 138
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
+ I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L
Sbjct: 139 -IELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLQ 197
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
LP+ ++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI
Sbjct: 198 PLPVNRVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDER 255
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V+ +S S +F L+ L + +L+E+ + +R+ HT+ L
Sbjct: 256 PVEPDQQVQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWKATRKTERVGHTVVL 308
>gi|15799936|ref|NP_285948.1| DNA polymerase IV [Escherichia coli O157:H7 str. EDL933]
gi|15829512|ref|NP_308285.1| DNA polymerase IV [Escherichia coli O157:H7 str. Sakai]
gi|168763472|ref|ZP_02788479.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|217324216|ref|ZP_03440300.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|387880812|ref|YP_006311114.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|416314767|ref|ZP_11658954.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|419045011|ref|ZP_13591967.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|419049925|ref|ZP_13596836.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|419059657|ref|ZP_13606456.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|419060440|ref|ZP_13607226.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|419107283|ref|ZP_13652393.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|421816484|ref|ZP_16252053.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|421828626|ref|ZP_16263957.1| DNA polymerase IV [Escherichia coli PA7]
gi|423712146|ref|ZP_17686450.1| DNA polymerase IV [Escherichia coli PA31]
gi|424075040|ref|ZP_17812418.1| DNA polymerase IV [Escherichia coli FDA505]
gi|424122327|ref|ZP_17855737.1| DNA polymerase IV [Escherichia coli PA5]
gi|424138355|ref|ZP_17870684.1| DNA polymerase IV [Escherichia coli PA14]
gi|424144804|ref|ZP_17876602.1| DNA polymerase IV [Escherichia coli PA15]
gi|424450070|ref|ZP_17901839.1| DNA polymerase IV [Escherichia coli PA32]
gi|424453353|ref|ZP_17904925.1| DNA polymerase IV [Escherichia coli PA33]
gi|424472686|ref|ZP_17922388.1| DNA polymerase IV [Escherichia coli PA42]
gi|424523797|ref|ZP_17967852.1| DNA polymerase IV [Escherichia coli EC4421]
gi|424530007|ref|ZP_17973663.1| DNA polymerase IV [Escherichia coli EC4422]
gi|425095675|ref|ZP_18498721.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|425123424|ref|ZP_18525028.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|425160107|ref|ZP_18559300.1| DNA polymerase IV [Escherichia coli FDA506]
gi|425165616|ref|ZP_18564444.1| DNA polymerase IV [Escherichia coli FDA507]
gi|425171899|ref|ZP_18570322.1| DNA polymerase IV [Escherichia coli FDA504]
gi|425183923|ref|ZP_18581573.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|425209419|ref|ZP_18605181.1| DNA polymerase IV [Escherichia coli PA4]
gi|425215468|ref|ZP_18610807.1| DNA polymerase IV [Escherichia coli PA23]
gi|425222039|ref|ZP_18616918.1| DNA polymerase IV [Escherichia coli PA49]
gi|425228286|ref|ZP_18622702.1| DNA polymerase IV [Escherichia coli PA45]
gi|425234586|ref|ZP_18628564.1| DNA polymerase IV [Escherichia coli TT12B]
gi|425408572|ref|ZP_18790754.1| DNA polymerase IV [Escherichia coli NE098]
gi|425414858|ref|ZP_18796515.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|425426008|ref|ZP_18807081.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|428950826|ref|ZP_19022984.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|428956675|ref|ZP_19028401.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|428975628|ref|ZP_19045824.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|428981341|ref|ZP_19051099.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|428987616|ref|ZP_19056929.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|428993428|ref|ZP_19062357.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|429005744|ref|ZP_19073696.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|429012110|ref|ZP_19079387.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|429018347|ref|ZP_19085150.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|429023995|ref|ZP_19090434.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|429045093|ref|ZP_19109852.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|429048246|ref|ZP_19112910.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|429059300|ref|ZP_19123467.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|429076537|ref|ZP_19139763.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429823779|ref|ZP_19355316.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429830138|ref|ZP_19361035.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444956342|ref|ZP_21274359.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444961688|ref|ZP_21279458.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|445026927|ref|ZP_21342712.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|445048918|ref|ZP_21364097.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|445054545|ref|ZP_21369503.1| DNA polymerase IV [Escherichia coli 99.0670]
gi|22095615|sp|Q8X7Q1.1|DPO4_ECO57 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|12513002|gb|AAG54556.1|AE005201_9 damage-inducible protein P; putative tRNA synthetase [Escherichia
coli O157:H7 str. EDL933]
gi|13359715|dbj|BAB33681.1| damage-inducible protein DinP [Escherichia coli O157:H7 str. Sakai]
gi|189366404|gb|EDU84820.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|209745366|gb|ACI70990.1| damage-inducible protein DinP [Escherichia coli]
gi|217320437|gb|EEC28861.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|326338762|gb|EGD62581.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|377897027|gb|EHU61415.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|377900349|gb|EHU64682.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|377902286|gb|EHU66592.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|377918852|gb|EHU82897.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|377967154|gb|EHV30560.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|386794270|gb|AFJ27304.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|390653899|gb|EIN31990.1| DNA polymerase IV [Escherichia coli FDA505]
gi|390684103|gb|EIN59733.1| DNA polymerase IV [Escherichia coli PA5]
gi|390711159|gb|EIN84143.1| DNA polymerase IV [Escherichia coli PA15]
gi|390714385|gb|EIN87294.1| DNA polymerase IV [Escherichia coli PA14]
gi|390744762|gb|EIO15604.1| DNA polymerase IV [Escherichia coli PA32]
gi|390745592|gb|EIO16385.1| DNA polymerase IV [Escherichia coli PA31]
gi|390756602|gb|EIO26105.1| DNA polymerase IV [Escherichia coli PA33]
gi|390779287|gb|EIO47006.1| DNA polymerase IV [Escherichia coli PA42]
gi|390861056|gb|EIP23337.1| DNA polymerase IV [Escherichia coli EC4421]
gi|390872231|gb|EIP33571.1| DNA polymerase IV [Escherichia coli EC4422]
gi|408072826|gb|EKH07143.1| DNA polymerase IV [Escherichia coli PA7]
gi|408090828|gb|EKH24085.1| DNA polymerase IV [Escherichia coli FDA506]
gi|408096503|gb|EKH29442.1| DNA polymerase IV [Escherichia coli FDA507]
gi|408103331|gb|EKH35702.1| DNA polymerase IV [Escherichia coli FDA504]
gi|408117126|gb|EKH48357.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|408141950|gb|EKH71370.1| DNA polymerase IV [Escherichia coli PA4]
gi|408150648|gb|EKH79212.1| DNA polymerase IV [Escherichia coli PA23]
gi|408153774|gb|EKH82149.1| DNA polymerase IV [Escherichia coli PA49]
gi|408159116|gb|EKH87218.1| DNA polymerase IV [Escherichia coli PA45]
gi|408167378|gb|EKH94890.1| DNA polymerase IV [Escherichia coli TT12B]
gi|408337814|gb|EKJ52499.1| DNA polymerase IV [Escherichia coli NE098]
gi|408350941|gb|EKJ64767.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|408353439|gb|EKJ66949.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|408560046|gb|EKK36332.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|408585788|gb|EKK60616.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|408617843|gb|EKK90946.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|427215048|gb|EKV84278.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|427218210|gb|EKV87237.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|427234897|gb|EKW02565.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|427251839|gb|EKW18366.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|427253688|gb|EKW20096.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|427254673|gb|EKW20996.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|427271306|gb|EKW36136.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|427277961|gb|EKW42463.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|427287088|gb|EKW50897.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|427293012|gb|EKW56307.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|427301119|gb|EKW64008.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|427305111|gb|EKW67718.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|427323346|gb|EKW84928.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|427335084|gb|EKW96132.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429260584|gb|EKY44141.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429262171|gb|EKY45533.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444583318|gb|ELV59045.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444586342|gb|ELV61854.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|444650657|gb|ELW23483.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|444673232|gb|ELW44885.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|444674790|gb|ELW46299.1| DNA polymerase IV [Escherichia coli 99.0670]
Length = 351
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|307104135|gb|EFN52390.1| hypothetical protein CHLNCDRAFT_138846 [Chlorella variabilis]
Length = 693
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 150/344 (43%), Gaps = 35/344 (10%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
PD+ R+I H D+D Y Q E+ + P LRG P V Q ++ Y AR++GV
Sbjct: 8 PDTG--RVIIHFDVDAMYAQAEEVRNPSLRGRPLGVTQKYL-----IVTCNYPARSHGVT 60
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+ M EA+ CP I LV DL+ YR A +++++L R G E+ +DE+++D
Sbjct: 61 KLMGVAEAQRRCPHIVLVS------GEDLTPYRAASKQILAVLKRYGTAEKLGLDEIFVD 114
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLE-SKDGNDSKATVKEWLCRCDADHR--- 181
T A+ LA S E+ H+ G E +D ++
Sbjct: 115 ATPEAQRRLAAL-ARSGCELPAWQGHVHLSGTELVQDSRHRPMDLRAVAAGQAPAAGGAA 173
Query: 182 ----------------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 225
+ LL G +I E R V E + SAG+A NK LAKL SG++
Sbjct: 174 ASCGAAGAGGSGGNSWEALLRIGSVIAAEARAAVRSEAGYRTSAGVACNKTLAKLCSGLH 233
Query: 226 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 285
KP QT +P + LP++ + +G K+ G+ T DL + +L + +
Sbjct: 234 KPDDQTVLPPPEGAAFVAPLPVRALPGVGYKM-EQALTAAGLATAADLRALTRHQLMQRF 292
Query: 286 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTV 329
G +G +L RG VQ R PKS SF R L V
Sbjct: 293 GERSGAFLHAACRGKDPSPVQERGPPKSVTVEDSFKTCRGLAAV 336
>gi|327277898|ref|XP_003223700.1| PREDICTED: DNA polymerase iota-like [Anolis carolinensis]
Length = 686
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 198/457 (43%), Gaps = 58/457 (12%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
+SS RII H+DLDCFY QVE P+L+G P V Q ++ YEAR++GV +
Sbjct: 41 ESSQNRIIVHLDLDCFYAQVEMICNPELKGKPLGVQQ-----KYIVVTCNYEARSFGVNK 95
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLD 125
M EAKE CP + LV DL+ YR +V ++L ER DE ++D
Sbjct: 96 LMSVKEAKEKCPDLLLV------NGEDLTKYREMSYKVTALLEEFTPLVERLGFDENFVD 149
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T+ + L + ++ ++ + HI ++ + ++ L
Sbjct: 150 ITELVDLKLEQWKKDAFSKI---SFSGHIYNKQTVNLHNPVHI---------------RL 191
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
A G I LR + T AG+A NK+L+KL SG KP QQT + S + L+ SL
Sbjct: 192 AVGSQIAATLREAMYHRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLLPESHQDLILSL 251
Query: 246 P-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
I K+ +G K L LG++TV DL S L+ G + + ++RG
Sbjct: 252 DHIGKVPGIGYKTTKRLMM-LGISTVRDLQLCSTVILERELGGSAAQHIQKLSRGEDDSL 310
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
V P+S SF + + A V+ + +L L RL D R HT+ L
Sbjct: 311 VTPSGPPQSLSDEDSF---KKCSSEAEVKKKVEELLTNLLHRLYKD----GRKPHTIRLT 363
Query: 365 ASAFKSSDSDSRKKFPSKSCPL------RYGT--AKIQEDTFNLFQAGLREFLGSFGVKT 416
F ++ ++ S+ CP+ R GT A I+ + ++ F VK
Sbjct: 364 LRKFSPTNKWFNRE--SRQCPIPSHLIQRIGTDDASIKAQLVVIL---MKLFHKMINVK- 417
Query: 417 QGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 453
+ + +T L+V S + S SI Y P
Sbjct: 418 -----APFHLTLLNVCFSNLKAPASNKKSIGFYLTHP 449
>gi|444983740|ref|ZP_21300613.1| DNA polymerase IV [Escherichia coli PA11]
gi|444600772|gb|ELV75593.1| DNA polymerase IV [Escherichia coli PA11]
Length = 351
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 132/297 (44%), Gaps = 66/297 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P+LRG P V W G + A YEAR +G+ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDNPELRGKPVVVA----WTGPRSVVCAASYEARRFGIHSAMS 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CPQ + VP D + YR ++ I AR TD
Sbjct: 58 AVRAERLCPQA--IYVP-----PDFNRYREVSRQIRQIFARH---------------TDL 95
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE A + + +C L
Sbjct: 96 IE-------PLSLDE----------------------AYLDVTINKCG-------LPSAT 119
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R Q+ +ET T SAGIA NK LAK+AS NKP Q V V L LP++K
Sbjct: 120 EVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVRPGKVLDFLQPLPVRK 179
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ + GK+ + +LG+ TVGDL S ++L+ +G G L+ +ARGI EVQ
Sbjct: 180 VPGV-GKVTQARLEQLGIHTVGDLATHSAEELEHYFG-RYGRRLYELARGIDEREVQ 234
>gi|190345515|gb|EDK37413.2| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/404 (26%), Positives = 174/404 (43%), Gaps = 67/404 (16%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
+IA VD++ F+ QVEQ + P VQ++ LIAV Y AR YG+ R
Sbjct: 43 VIALVDMNAFFAQVEQTRLNLSIDDPVVCVQWS-----TLIAVSYAARKYGINRMDNVKS 97
Query: 73 AKEVCPQIELVQVPV-----------------ARGKADLSSYRNAGSEVVSILARKGRC- 114
A+E CP + L V A K L YR +++ I+ K C
Sbjct: 98 AREKCPDVILAHAAVFKKGNPYWSYVDGLPNQAEHKVSLDPYRRESRKIIKII--KQHCD 155
Query: 115 --ERASIDEVYLDL-TDAAEAMLAETP----------------PESL--------DEVDE 147
E+AS+DE Y+DL + + +L E P PESL E ++
Sbjct: 156 VVEKASVDECYMDLGREVHKRLLLEFPQLRQLGSKLPDIPPQLPESLYWQGETVRTEAED 215
Query: 148 EALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 207
L+S S+ S T+ +W C + G ++ ++R + E +T
Sbjct: 216 AELQSRENVSSSQKPPASPPTISDWDDIC--------VLIGAQVLYKIRKLIYDELSYTT 267
Query: 208 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-- 265
S GIA NK LAKLA+G NKP QT + +S+ L + + +GGK G ++
Sbjct: 268 SGGIARNKFLAKLAAGFNKPDNQTIIRSASIPNFLTNFQFNDVSGMGGKTGDTVLARFDT 327
Query: 266 --GVTTVGDLLK-FSEDKLQESYGFNT--GTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
GV + L + ++ +Q+ Y + +++I RG + ++ R KS S K+F
Sbjct: 328 PPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDVKSMMSRKNF 387
Query: 321 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
R +KT+ + WL +L R ++N ++ + H
Sbjct: 388 IPQRPVKTLFDIFSWLKVYAGDLHNRFIDLDDENMNLSMSSVSH 431
>gi|124007421|ref|ZP_01692127.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
gi|123987077|gb|EAY26826.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
Length = 325
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/350 (29%), Positives = 155/350 (44%), Gaps = 68/350 (19%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+D FY VEQR P+ +G P AV E G + A YEAR +GV +M A
Sbjct: 4 IIHIDMDAFYASVEQRDHPQYQGKPLAVGGSRER--GVVAAASYEARKFGVYSAMSSRLA 61
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP I V R + D+ Y+ + I E++ + TD E
Sbjct: 62 YQKCPHIIFV-----RPRFDV--YKEVSQQ---------------IREIFHEYTDLVE-- 97
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE + K+ + G+ S +I
Sbjct: 98 -----PLSLDEAYLDVTKNKV-GMPS----------------------------ATIIAR 123
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E++ ++ T+ T SAGI+ NK LAK+AS M+KP T + + LPIKK +
Sbjct: 124 EIKQKIFDATQLTASAGISVNKFLAKVASDMDKPNGLTLISPEEAADFVAKLPIKKFHGI 183
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
G +Q +LG+ T DL ++ + KL +G G + +NIA+GI V + KS
Sbjct: 184 GKVTAKKMQ-QLGIFTGADLRRWDKAKLVRQFG-KVGNYYFNIAQGIDQRSVNPHRIRKS 241
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ +F L ++ ++ L+QL EEL R +E+ K T+TL
Sbjct: 242 ISTENTF--DHDLASLEEMETALHQLAEELMRR----MEKTKSFGQTITL 285
>gi|448513234|ref|XP_003866901.1| Rad32 protein [Candida orthopsilosis Co 90-125]
gi|380351239|emb|CCG21463.1| Rad32 protein [Candida orthopsilosis Co 90-125]
Length = 671
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 174/398 (43%), Gaps = 69/398 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IA VDL+ F+ QVE + P Q WK +IAV Y AR YG+ R A
Sbjct: 46 IALVDLNAFFAQVETIRLGLTEDDPVVCQQ---WKA--IIAVSYAARKYGINRMDTVASA 100
Query: 74 KEVCPQIELVQVPV-----------------ARGKADLSSYRNAGSEVVSILARK-GRCE 115
+E CP + V A K L +YR +++ ++ K E
Sbjct: 101 REKCPNVVCAHAGVYKKGSKNWTYEEGQPDPAHHKVSLDNYRRESRKIIRLIQSKFDFVE 160
Query: 116 RASIDEVYLDLTDAAEAMLAETPPE----SLDEVDEEALKSHILGL-------------- 157
+AS+DE Y+DL L E P+ D D+E L S L
Sbjct: 161 KASVDESYIDLGRPVYGTLLEKFPQLKCRISDASDDEVLPSIPDKLPQDIQWYGTIIESE 220
Query: 158 -ESKDGNDSKA-TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 215
E D D +A + +W D +LA G ++ +LR + E +T SAG+A NK
Sbjct: 221 KELADPQDIQAPQIFDW--------DDVVLAIGSELLLDLRQSIHDELGYTTSAGLARNK 272
Query: 216 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
++AKL+ G KP QT V ++ L++ + + +GGKLG L N GV + +
Sbjct: 273 LVAKLSGGFKKPDDQTIVRNCALNRFLNNFELTDVTGMGGKLGEQLINRFGVPPDRNSIA 332
Query: 276 FSEDKLQESYGFNT-----------GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 324
F ++E+Y ++ L+ I RG+ E+ R+ KS S K+F G R
Sbjct: 333 F----IRENYSLSSVKEEIKEDPDLALKLYKIVRGLHPSELTDRVEIKSMMSTKNFLGTR 388
Query: 325 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
T+A WL +LS RL +DL+ N+ + +LT
Sbjct: 389 NW-TLADAYDWLTVFSGDLSNRL-TDLD-NESMELSLT 423
>gi|156041128|ref|XP_001587550.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980]
gi|154695926|gb|EDN95664.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 465
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 145/315 (46%), Gaps = 39/315 (12%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S R+IA VD D FY Q E + P AV Q+N +IA+ Y AR +G R
Sbjct: 33 SPLRVIALVDYDAFYAQCEMVRLKLDASQPLAVQQWN-----AIIALNYAARGFGFSRGA 87
Query: 69 RGDEAKEVCPQIELVQVPVAR--------------------GKADLSSYRNAGSEVVSIL 108
+E + +CP I + V R KA L YR + ++I+
Sbjct: 88 SVEEVRRLCPNIIMQHVATWREGETSWAYRSDAADPAMMKKDKAALDPYRIESRKSINII 147
Query: 109 ARK------GRCERASIDEVYLDLTDAAEAMLAETPPE-SLDEVDEEAL----KSHILGL 157
+ R E+AS+DEV++DL+ ++L P+ ++D+ +L + +L
Sbjct: 148 TKHLPPAPLQRIEKASVDEVFIDLSAHVHSVLVSRYPQLAVDDNVHGSLPLPPRDIVLHW 207
Query: 158 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 217
E+ + D + + R D D + L G IV LR ++ + +TCSAGIA NK L
Sbjct: 208 ETDNLVDLPTSTDD-THRIDWD--EIALNIGAQIVRNLRKEIFESLHYTCSAGIAQNKAL 264
Query: 218 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 277
AKL +G KP QQT + +V L + + ++ L G LG + G ++ DLL
Sbjct: 265 AKLGAGFKKPDQQTVIRARAVPFFLSTCKMTSIRGLAGVLGVKAKEAFGSNSIPDLLAIP 324
Query: 278 EDKLQESYGFNTGTW 292
+ ++ + F T ++
Sbjct: 325 QKEIVAALDFRTASY 339
>gi|170098863|ref|XP_001880650.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644175|gb|EDR08425.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 629
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 182/431 (42%), Gaps = 76/431 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+IA D D FY E + + P V+Q+ LIAV Y AR +G+ R +
Sbjct: 44 RVIALCDSDAFYAACEMVRLEVDKETPLVVLQWE-----ALIAVNYAARKFGISRMDKLK 98
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 112
+A E CP +++V V + K L YR ++ + L +
Sbjct: 99 DALERCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESVKISKLFKELLVEC 158
Query: 113 RCERASIDEVYLDLTDAAEAML-------AETPPESLDEVD------------------- 146
E+ASIDE + D + +L A PP + D VD
Sbjct: 159 EVEKASIDEAFFDFSKPVREILLQRYPYLATVPPNAPDGVDTPLPPPPPIHWDDLGWVIP 218
Query: 147 ------EEALKSHILGLESKDGNDSKATVKEWLCRCDADH------RDKLLACGVLIVTE 194
E ++ G E+ D + K V+E + D D L+ ++
Sbjct: 219 INPPPPSEQVEEENKGQEN-DIDQEKDKVQEDVSSSWKDEESIPTWHDVALSIAAELMGS 277
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVKGLLDSLPIKKMKQ 252
R QVL++ ++ SAGIA NK LAKL + KP Q + + +++ L + +K++
Sbjct: 278 ARAQVLQKLGYSTSAGIARNKFLAKLTASYKKPNSQAGSILRNAAIPNYLKPIAFRKIRF 337
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LL 310
LGGKLG + E +TV L D +Q +G W++ + RGI EV+ + +L
Sbjct: 338 LGGKLGKAFAQEYDASTVTPL-----DDMQNKFG-EESIWVYEVLRGIDRAEVKDKGSVL 391
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFK 369
KS + K+ P P +K + HW+ L EL+ RL +++ + TL LHA
Sbjct: 392 NKSMLASKNLPKP--IKNASEGHHWIRVLAAELALRLNDARKESPNLWPKTLVLHARKGY 449
Query: 370 SSDSDSRKKFP 380
+ + FP
Sbjct: 450 EAGRSKQAPFP 460
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 141/310 (45%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRGLP AV Y +G + A YEAR +GV +M
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGLPVAV-GYPAARGV-VAAASYEARRFGVHSAMPSV 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
AK CP + V R + D+ Y+ ++ +I A E S+DE YLD+T+
Sbjct: 69 TAKRKCPDLVFV-----RPRFDV--YKAVSLQIRAIFAEYTPMIEPLSLDEAYLDVTENL 121
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ M E+ E
Sbjct: 122 KGM----------EIATE------------------------------------------ 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + + ++ LPIKK
Sbjct: 130 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLPIKKF 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + LG+ T DL + S + L E +G +G + + IARGI E++ +
Sbjct: 190 HGVGPATAEKM-HRLGIETGADLKEKSFEFLVEHFG-KSGPYFYGIARGIDNREIKPNRV 247
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|417606183|ref|ZP_12256714.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
gi|345365850|gb|EGW97950.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
Length = 351
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI-GGSRARRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKSDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 133/315 (42%), Gaps = 62/315 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRG AV Y K G + A YEAR +GV+ +M
Sbjct: 7 RKIIHVDMDAFYASVEQRDNPELRGKALAV-GYGA-KRGVVAAASYEARAFGVRSAMPST 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A CP++ VQ +YR ++ +I AR Y D+ +
Sbjct: 65 TAIRQCPELIFVQ-------PRFDAYRAVSQQIRAIFAR------------YTDVIE--- 102
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D + L
Sbjct: 103 -------PLSLDE-----------------------------AYLDVTANPRGLPTASDT 126
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
TE+R +L ET T SAG+++NK LAKLAS M KP Q +P + +LP+KK
Sbjct: 127 ATEIRACILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIPPQRGAEFIATLPVKKFH 186
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + N LG+ T DL S + LQ +G +G W + IARG V+
Sbjct: 187 GIGPVTAAKM-NALGIQTGADLRSQSIEFLQRQFG-KSGAWYYAIARGEDDRPVEPNRPR 244
Query: 312 KSHGSGKSFPGPRAL 326
KS GS +F R +
Sbjct: 245 KSSGSETTFSEDRVI 259
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 139/310 (44%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRGLP AV Y +G + A YEAR +GV +M
Sbjct: 19 RKIVHVDMDAFYASVEQRDNPELRGLPVAV-GYPAARGV-VAAASYEARKFGVHSAMPSV 76
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
AK CP + V K YR ++ SI A E S+DE YLD+T
Sbjct: 77 TAKRKCPDLIFV-------KPRFDVYRAVSLQIRSIFAEYTPMIEPLSLDEAYLDVT--- 126
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E LK + E
Sbjct: 127 -----------------ENLKGIEIATE-------------------------------- 137
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + + + ++++P+KK
Sbjct: 138 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGQAFVEAVPVKKF 197
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + LG+ T DL +++ L E +G +G + + IARGI EV+ +
Sbjct: 198 HGVGPATAEKM-HRLGIETGADLKGKTQEFLVEHFG-KSGPYFYGIARGIDNREVKPDRV 255
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 256 RKSVGAEDTF 265
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 152/356 (42%), Gaps = 77/356 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG---GLI-AVGYEARNYGVKRS 67
R I HVD+D FY VEQ P L+G AV GG G++ A YEAR YGV+ +
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPALKGKAIAV-------GGEHRGVVSAASYEARKYGVRSA 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M AKE CP + V AR K ++RK I E++ + T
Sbjct: 61 MPSKTAKEKCPHLIFVPPHFARYKE---------------ISRK-------IREIFYEYT 98
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D E P SLDE D K +
Sbjct: 99 DLVE-------PLSLDE-----------------------------AYLDVTENKKEIES 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+ LP+
Sbjct: 123 ANQIAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKIENFLEELPV 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K + G++ + LG+ DL K + +L +G +G++ +N+ RGI EV
Sbjct: 183 EKFYGV-GRVTANKMFTLGIFKGKDLKKKTLQELVSLFG-KSGSYYYNVVRGIHNSEV-- 238
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
K H KS R + +N+ E LS L L++N + LTL
Sbjct: 239 ----KPHRIQKSVAVERTFFEDLFDEQQINEKLESLSAELHQRLQKNNILGRALTL 290
>gi|356495829|ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Glycine max]
Length = 1115
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 121/436 (27%), Positives = 181/436 (41%), Gaps = 77/436 (17%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVK 65
D S +I HVD+DCF+V V R P+L G P AV N G I+ Y AR++G++
Sbjct: 373 DISHNSVIIHVDMDCFFVSVVIRNHPELLGQPVAVCHSNNSNGTAEISSANYPARSHGIR 432
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA---SIDEV 122
M +AK +CP LV P + +Y + SIL + RC++ S DE
Sbjct: 433 AGMFVRDAKALCPH--LVIFPY-----NFEAYEEVADQFYSILHQ--RCKKVQAVSCDEA 483
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
+L D DS+ E
Sbjct: 484 FL------------------------------------DATDSEVEDPE----------- 496
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
L+ + +R ++ K T T SAGIA N ++A++A+ KP Q + V+ L
Sbjct: 497 -------LLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHL 549
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LPI + +G L L+ + V T G L S+ LQ+ YG TG LW +RGI
Sbjct: 550 CQLPINALPGIGYVLQEKLKKQ-NVHTCGQLRMISKASLQKDYGMKTGEMLWIYSRGIDN 608
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V KS G+ ++ G R K + +H+L LC+E+S RL Q + T T
Sbjct: 609 RLVGGFQESKSVGADVNW-GVR-FKDIKDCEHFLINLCKEVSLRLQGCGVQGR----TFT 662
Query: 363 LHASAFKSSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
L + + + K C L + T + D + Q +++ LG F + +
Sbjct: 663 LKIKKRRKNADEPAKFMGCGDCENLSHSVTIPVATDNVEILQRIVKQLLGCFYIDVKEIR 722
Query: 421 YSGWRITAL-SVSASK 435
G ++ L S ASK
Sbjct: 723 GIGLHVSRLESAEASK 738
>gi|354546768|emb|CCE43500.1| hypothetical protein CPAR2_211440 [Candida parapsilosis]
Length = 670
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 177/395 (44%), Gaps = 66/395 (16%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IA VDL+ F+ QVE + +P Q WK +IAV Y AR +G+ R + A
Sbjct: 46 IALVDLNAFFAQVETIRMGLTEDVPVVCQQ---WKA--IIAVSYAARKFGINRMDTVESA 100
Query: 74 KEVCPQIELVQVPVARG-----------------KADLSSYRNAGSEVVSILARK-GRCE 115
+ CP + V + K L +YR +V+ I+ K E
Sbjct: 101 RAKCPNLVCAHAGVYKKGDRHWTYEEGQPDPVNHKVSLDNYRRESRKVLRIIQSKFDLVE 160
Query: 116 RASIDEVYLDLTDAAEAMLAETPPE-SLDEVDEEALKS-----------HILGLESKD-- 161
+AS+DE Y+DL +L E PE +++ ++E+L S H +ES+
Sbjct: 161 KASVDESYIDLGRPIYEILLEKFPELNINAGNDESLPSIPKTLPQDIQWHGTVIESEREI 220
Query: 162 ---GNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 218
N + +W D +LA G + +LR + E +T SAG+A NK++A
Sbjct: 221 ADPQNVQPPQIFDW--------DDVVLAIGSQFLLDLRQAIYDELGYTTSAGLARNKLVA 272
Query: 219 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 278
KL+ G KP QT V ++ L + + + +GGKLG L N+ V + + F
Sbjct: 273 KLSGGFKKPDDQTIVRNCALNRFLSNFELTDVTGMGGKLGEQLINKFEVPPDRNSIAF-- 330
Query: 279 DKLQESYGFNT-----------GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 327
++E+Y F+ L+ I RG+ E+ R+ KS S K+F G +
Sbjct: 331 --IRENYTFDMVKQELREDAELALKLYQIVRGLYSSELTDRIEIKSMMSTKNFLGSKGW- 387
Query: 328 TVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
T+A WL +LS RL +DL+ N+ + +LT
Sbjct: 388 TLADAYDWLTVFSGDLSNRL-TDLD-NESMELSLT 420
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 167/385 (43%), Gaps = 85/385 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLIAVG-YEARNYGVKR 66
R I HVD+D FY VE+ P L+G P AV GG G++A YEAR YGV+
Sbjct: 8 RKIIHVDMDAFYASVEELDNPDLKGKPLAV-------GGSEIRGVVAAANYEARKYGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M AK CPQI VQ R K ++S I +++ D
Sbjct: 61 AMSSVMAKRNCPQITFVQPRFERYK-EISQ---------------------KIRKIFYDY 98
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE +++ +K GN S +
Sbjct: 99 TDLVE-------PLSLDE-------AYLDVTVNKKGNPSAS------------------- 125
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI E+R ++ E SAGI+ NK +AK+AS NKP Q TV V L+ L
Sbjct: 126 ---LIAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLEKLE 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ T +LG+ T DL + SE L E++G +G + +++ RG+ V+
Sbjct: 183 IRKFYGV-GKVTTEKMYKLGIFTGFDLKQKSEIFLTENFG-KSGGYYYHVVRGVHNSAVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+PKS G+ ++F L + + L + EL RL K I TL + S
Sbjct: 241 PHRIPKSVGAERTF--SENLSSEIFMLERLEHIATELERRLKKSTISGKTI--TLKIKYS 296
Query: 367 AFKSSDSDSRKKFPSKSCPLRYGTA 391
F ++S LRY A
Sbjct: 297 DF---------TLQTRSKTLRYYIA 312
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 179/416 (43%), Gaps = 79/416 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P+ RG P V + E +G + A YEAR YG+ +M
Sbjct: 4 RKIIHIDMDAFYASVEQRDHPEWRGKPLIVARAAEERGV-VAAASYEARRYGIHSAMSTH 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDAA 130
A++ CPQ+ L + YR ++ ++ LA E S+DE YLD++D
Sbjct: 63 RAQQRCPQLIL-------APPRFAVYRAVSLQIRALMLAITDAVEPLSLDEAYLDVSD-- 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+P E N S + E L
Sbjct: 114 ------SPHE----------------------NGSATRIAERLS---------------- 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
++L T T SAG+++NKMLAK+AS +NKP + + + SL I++
Sbjct: 130 ------AEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGADFVASLAIERF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + + LG+ T DL + S + L+ +G G + +++ARGI V+A
Sbjct: 184 HGI-GKATAAHMHALGIQTGADLRRLSRETLRHEFG-KHGDFYYDMARGIDLRPVEAARE 241
Query: 311 PKSHGSGKSFPGPRALKTVASV-QHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS GS +F R ++ A++ Q L Q E +D+++ HTLTL K
Sbjct: 242 RKSIGSETTF--ARDIEDHAALYQALLAQNREAF-----ADVQRRHLQPHTLTL---KLK 291
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 425
SD + + S P +ED L+E + V+ G YSG R
Sbjct: 292 YSDFSQTTRRQTLSTPF-----AREEDAHYWIARLLQEIAPARPVRLVGITYSGLR 342
>gi|320592660|gb|EFX05090.1| sister chromatid cohesion protein [Grosmannia clavigera kw1407]
Length = 870
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 166/403 (41%), Gaps = 79/403 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++AH+DLD +Y Q E + P AV Q+ LIAV Y AR +G+ R +
Sbjct: 72 RVVAHIDLDAYYAQCEMLRLGVDDDTPLAVQQWRN-----LIAVNYPARAFGIGRMVTAV 126
Query: 72 EAKEVCPQIELVQVPVAR------------------GKADLSSYRNAGSEVVSILARK-- 111
EA+ +CP + L VP + K L YR E+++ +
Sbjct: 127 EARRLCPGLVLQHVPTWKEGETQWAYHADADKAMQTHKVSLEPYRIRSREILATIKASLP 186
Query: 112 -GRC--ERASIDEVYLDLTDAAEAMLA-ETPPESLDEVDEEALKSHILGLESKDGNDSKA 167
GRC E+A IDEV++DL+ +L ET PE L D+ SH A
Sbjct: 187 AGRCRIEKAGIDEVFIDLSACVHDVLVHETYPELL--ADDGDASSHG---PDDPLPPPPA 241
Query: 168 TVKEWLC-----------------RCDADHRDKLLACGVL----------------IVTE 194
+W D++ GV IV
Sbjct: 242 IALDWAATGSGVIQPDTGGREERPEGGGGGGDEMAQSGVDDDPPDWDDVAMLEGARIVRA 301
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQL 253
+RM + F CSAGIA NK+++KL S +KP +QT V +V L+ L + +++ L
Sbjct: 302 VRMAIYDHLRFRCSAGIASNKLVSKLGSSQHKPDRQTVVRPRAVGSFLERLSSVTRLRGL 361
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQ---------ESYGFNTGTWLWNIARGISGEE 304
GGKLG + ++ +L ++Q ES +T ++ + RGI E
Sbjct: 362 GGKLGARVVAAFDTESIAELRTIPLAEMQSRLAGGGAGESIDADTARHVYGMLRGIDHGE 421
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
V +R KS S KSF P L + + WL EL RL
Sbjct: 422 VTSRTEIKSLISAKSFQPP--LTSPEQGRRWLRVFAAELRCRL 462
>gi|255555247|ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
gi|223542041|gb|EEF43585.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
Length = 1200
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 177/427 (41%), Gaps = 72/427 (16%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVK 65
D+S +I HVD+DCF+V V R P+L P AV + KG I+ Y AR YG+K
Sbjct: 359 DNSHKTVIMHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARAYGIK 418
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYL 124
+ +AK +CPQ L+ P + +Y + ++L + + + S DE +L
Sbjct: 419 AGIFVRDAKALCPQ--LIIFPY-----NFQAYEEVADQFYNVLHKHCNKVQAVSCDEAFL 471
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+TD + D E L S I
Sbjct: 472 DITDFSGG-------------DPEVLASTI------------------------------ 488
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
R ++ + T T SAGIA N +L++LA+ KP Q + V L+
Sbjct: 489 -----------RKEIFETTGCTASAGIARNMLLSRLATRTAKPDGQCYIRPEKVDEYLNE 537
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
L IK + +G L L+ + V T G L S+D L + +G TG LWN +RGI
Sbjct: 538 LSIKTLPGIGHVLEEKLKKK-NVRTCGQLRLISKDSLHKDFGKKTGEMLWNYSRGIDNRL 596
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
V KS G+ ++ G R + + QH+L LC+E+S R L+ T TL
Sbjct: 597 VGVIQESKSIGAEVNW-GVR-FRNLQDSQHFLLNLCKEVSLR----LQGCGVHGRTFTLK 650
Query: 365 ASAFKSSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
+ + K C L + T + D ++ Q ++ GSF + +
Sbjct: 651 IKKRRKDAGEPTKYMGCGDCENLSHSMTVPVATDDVDVLQRIAKQLFGSFNLDVKEIRGV 710
Query: 423 GWRITAL 429
G +++ L
Sbjct: 711 GLQVSKL 717
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 162/367 (44%), Gaps = 71/367 (19%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEA 59
MP S R I HVD+D F+ VEQR +P+LRGLP V+ + G++A YEA
Sbjct: 1 MPSPLEHSLAIRKIIHVDMDAFFAAVEQRDRPELRGLP--VIVGGDPNVRGVVATCSYEA 58
Query: 60 RNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERAS 118
R +G++ +M A+ +CPQ V + + +YR +V++IL + E S
Sbjct: 59 RRFGIRSAMSAARARSLCPQAIFV-------RPRMDAYREVSRQVMTILRSYTALVEPLS 111
Query: 119 IDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDA 178
+DE +LD+T A + DG + +E L R
Sbjct: 112 LDEAFLDVTAA-----------------------------TTDGTLAVEIAREILDRI-- 140
Query: 179 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
HR ET T SAG+++NK+LAKLAS KP +P
Sbjct: 141 -HR--------------------ETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG 179
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L LP+ K+ +G L + +GV TV DL S + L +G +G W +++AR
Sbjct: 180 LAFLAPLPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG-KSGGWFYDVAR 237
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
I VQ KS G+ ++F K +A L L +E++ ++ + L+
Sbjct: 238 AIDERPVQPSRQRKSVGTERTFS-----KNLADRSVMLTTL-QEMAAQVAARLQVLHLAG 291
Query: 359 HTLTLHA 365
HT+ + A
Sbjct: 292 HTVHIKA 298
>gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
gi|336480000|emb|CCB86598.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
Length = 359
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 158/363 (43%), Gaps = 71/363 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RII H+D+D F+ +E + P L+G P +V + K G + YEAR YGV +M
Sbjct: 4 RIIFHIDMDAFFASIEILRNPSLKGKPV-IVGGSPDKRGVVSTCSYEARAYGVHSAMSLF 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
EAK+ CP V+ D + YRN S+V+ IL+R E SIDE Y+D++
Sbjct: 63 EAKKKCPHAIFVE-------GDYAIYRNYSSKVMDILSRHSSLVEVVSIDEAYMDVS--- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
LK +D + T K++
Sbjct: 113 ------------------FLK-----------DDPEMTAKQY------------------ 125
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+L+ VLK T TCS GIA NK++AK+AS KP +P L +LPI +
Sbjct: 126 -GRKLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATLPIGAI 184
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA-RL 309
+G K SL ++ + T+ DL K D L E YG G + + A GI V
Sbjct: 185 PGIGSKTEKSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDKRPVDGEEY 242
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASA 367
PKS G+ +F A T+ L + EL ++ C L+ Q + +L L S
Sbjct: 243 FPKSIGAETTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGFSLKLRYSD 296
Query: 368 FKS 370
F++
Sbjct: 297 FRT 299
>gi|440795136|gb|ELR16272.1| ImpB/MucB/SamB family protein [Acanthamoeba castellanii str. Neff]
Length = 590
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 169/376 (44%), Gaps = 49/376 (13%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++ H+DLDCF+VQVE K P+L G AV Q+N+ +I+ Y AR GV++ M
Sbjct: 12 RVVLHLDLDCFFVQVETLKDPRLAGHAVAVQQHND-----IISADYAARRRGVRKHMTPA 66
Query: 72 EAKEVCPQIELVQVPVARG--KADLSSYRNAGSEVVSIL----------ARKG------- 112
EA +CP ++LV V G K Y+ A + V ++L A G
Sbjct: 67 EALALCPDLKLVHVRRTEGTSKVTYEDYQKASAGVQTLLQNTIASLQSAAASGVNSKRKT 126
Query: 113 -----RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 167
E+ASID+ Y+D+T A L ++++D A + E +
Sbjct: 127 EKAPPEVEKASIDDFYVDVTPLVAAQLERG--LLINDLDMPASQMASQSSEWPGAVEGPG 184
Query: 168 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 227
V + ++ L G I LR V + SAG+A NK+LAKLAS +KP
Sbjct: 185 LVSAHILTA----QEVQLREGARIAASLREAVHTKCGLRVSAGVAQNKLLAKLASSASKP 240
Query: 228 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED-------- 279
QTTV SV +L P K+ QLG KLG + L D +K D
Sbjct: 241 DGQTTVLPGSVPSMLARHPPSKIPQLGVKLGKEKRGVLLAAPWTDRVKVISDLASASLLP 300
Query: 280 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 339
+L+ ++G + WL + +GI V K G KS +L ++ + + ++
Sbjct: 301 ELRLAFGDDKAEWLHRVGQGIDDTPV------KDKGPPKSLMSSMSLTSITNDAYQFKKI 354
Query: 340 CEELSERLCSDLEQNK 355
L++ LC L++++
Sbjct: 355 LRYLADELCKRLKEDE 370
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 142/316 (44%), Gaps = 64/316 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRG AV Y K G + A YEAR +GV+ +M
Sbjct: 7 RKIIHVDMDAFYASVEQRDNPELRGKAIAV-GYGA-KRGVVAAASYEARAFGVRSAMPST 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
+A CP LV VP YR ++ +I AR E S+DE YLD+T+
Sbjct: 65 KALRQCPS--LVFVP-----PRFEIYRAVSQQIRAIFARYTPLIEPLSLDEAYLDVTE-- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
++ GL + +D+ A
Sbjct: 116 ----------------------NLRGLPT--ASDTAA----------------------- 128
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R ++L ET T SAG+++NK LAKLAS + KP Q +P ++ LP+K+
Sbjct: 129 ---EIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIPPQRGAEFIEGLPVKQF 185
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + N LG+ T DL S + LQ+ +G +G W + IARG V+
Sbjct: 186 HGVGPVTAEKM-NALGIQTGADLRAQSLEFLQQHFG-RSGAWYYAIARGEDDRPVEPNRP 243
Query: 311 PKSHGSGKSFPGPRAL 326
KS GS +F R L
Sbjct: 244 RKSSGSETTFSEDRLL 259
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 147/337 (43%), Gaps = 64/337 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I HVD+D FY VEQ P LRG P AV E G + A YEAR YGV+ +M G
Sbjct: 4 VRKIIHVDMDAFYASVEQMDNPDLRGKPVAVGGNRER--GVVAAASYEARFYGVRSAMSG 61
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 130
A CP++ V+ R K +LS+ I E++ D TD
Sbjct: 62 KLAALKCPKLVFVKPRFDRYK-ELSN---------------------QIREIFYDYTDLV 99
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E P SLDE L + N+ AT L
Sbjct: 100 E-------PLSLDEA--------FLDVTENKVNNPSAT---------------------L 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K
Sbjct: 124 IAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLEKLPIEKF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ +G+ DL +FS L + +G +G +NI RGI EVQ +
Sbjct: 184 FGI-GKVTAEKMKSIGIHNGHDLKQFSIQYLTKKFG-KSGLHFFNIVRGIHLSEVQPNRI 241
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS + +F + L S + L ++ EEL R+
Sbjct: 242 RKSLSAENTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|71653214|ref|XP_815248.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70880290|gb|EAN93397.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 170/381 (44%), Gaps = 51/381 (13%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I H+D+DCFY QVE R R P + Q+ G LIAV Y AR G+ R
Sbjct: 2 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 56
Query: 71 DEAKEVCPQIELVQVPV-------------AR---GKADLSSYRNAGSEVVSIL-ARKG- 112
++A+E CP +++ V AR K L YR A ++ +IL + +G
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 113 RCERASIDEVYLDLTDAAEAMLAET--PPESLDEVDEEALKSHILGLESKDGNDSKATVK 170
E+ S+DE YLD+T AA+ LA P E+ + E+ D +A +
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASIRLPSAQCSYHLEDVMHP-----ETNVIPDRRAEID 171
Query: 171 EWLC----------------RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 214
WL + +H+ LL +V +LR ++ +E + CSAGIAHN
Sbjct: 172 AWLFEKGKEFNEIFDTALHPQATVEHQ-LLLGAASRVVWKLREKIYQELCYDCSAGIAHN 230
Query: 215 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGDL 273
K+LAK S +KP QQT + V + P + + GGK G S+ G D
Sbjct: 231 KILAKSISSRHKPNQQTLLLPDRVASAVWDAPYQSIHGFGGKFGESVCRACGNAELFRDA 290
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+KLQ G + GT+ + R E++Q + + K+ + KSF P + + ++
Sbjct: 291 WLVPLEKLQSVLGVDDGTYAFYRLRCHGKEKIQEQSVTKTLMASKSFSPPTS--SSEGLR 348
Query: 334 HWLNQLCEELSERLCSDLEQN 354
W+ L EL R E N
Sbjct: 349 KWITVLSSELCARYKEFCETN 369
>gi|415836107|ref|ZP_11518536.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|417284255|ref|ZP_12071550.1| DNA polymerase IV [Escherichia coli 3003]
gi|425276150|ref|ZP_18667497.1| DNA polymerase IV [Escherichia coli ARS4.2123]
gi|323191391|gb|EFZ76653.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|386242464|gb|EII84199.1| DNA polymerase IV [Escherichia coli 3003]
gi|408207435|gb|EKI32179.1| DNA polymerase IV [Escherichia coli ARS4.2123]
Length = 351
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +L + K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLSLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/361 (31%), Positives = 175/361 (48%), Gaps = 37/361 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD+D FY VE R P+L+ P AV + L Y AR YGV+ +M G
Sbjct: 99 RVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMS-----MLSTSNYHARKYGVRAAMPGF 153
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAA 130
AK++CP LV VP + YR SE+ I A S+DE YLD T+
Sbjct: 154 IAKKLCPN--LVIVPT-----NFDKYRAVSSEIREIFADYDPNFMPMSLDEAYLDFTEHL 206
Query: 131 EAMLAETPPESL-DEVDE--EALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E ++ P+SL DE +E + + L +DS ++ LC DA ++
Sbjct: 207 EKR--QSWPDSLRDENNELPQETTPDVTDLSPVLFDDSPSS---SLCCEDAGSAFEIFGT 261
Query: 188 GVL-IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDS 244
V V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P + +V + +
Sbjct: 262 SVEEAVREMRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMEFVCN 321
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNIARGISG 302
LP++K+ + GK+ L N LG+++ L + S F+ W ++ G+
Sbjct: 322 LPVRKVSGI-GKVSEKLLNALGISSCSHL---GQKMALLSLLFSETAWHHFLQVSLGLG- 376
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
+ +P+ H KS R K +++ + L+ LC EL E L +DL++ T+T
Sbjct: 377 ----SAFIPR-HEERKSMSTERTFKEMSAAEEQLS-LCRELCEDLANDLKKEGLKGKTVT 430
Query: 363 L 363
L
Sbjct: 431 L 431
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 157/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 61 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GIE--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL ++S L+E++G + G L+N ARGI V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRRWSLVDLEEAFG-SFGRSLYNRARGIDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLLLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 158/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GME--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|74202822|dbj|BAE37492.1| unnamed protein product [Mus musculus]
Length = 267
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 131/270 (48%), Gaps = 32/270 (11%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S +R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GV++ M
Sbjct: 24 SSSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQ-----KYLVVTCNYEARKLGVRKLM 78
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+AKE CPQ+ LV DLS YR +V +L ER DE ++DLT
Sbjct: 79 NVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLT 132
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 EMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LVV 174
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 GSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNH 234
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 276
IK++ +G K L+ LG+ +V DL F
Sbjct: 235 IKEIPGIGYKTAKRLE-VLGINSVHDLQTF 263
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 129/297 (43%), Gaps = 66/297 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P+LRG P V W G + A YEAR +G+ +M
Sbjct: 6 RKIVHVDMDAFYASVEQRDNPELRGKPVVVA----WTGPRSVVCAASYEARRFGIHSAMS 61
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + + VP D + YR ++ I AR TD
Sbjct: 62 AMRAERLCP--DAIYVP-----PDFNRYREVSRQIRQIFARH---------------TDL 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE D H L
Sbjct: 100 IE-------PLSLDE-----------------------------AYLDVTHNKGGLPSAT 123
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R Q+ +ET T SAGIA NK LAK+AS NKP Q + + V L LP++K
Sbjct: 124 EVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIRPTKVLEFLQPLPVRK 183
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ + GK+ + +LG+ TVGDL S ++L +G G L+ +ARGI EVQ
Sbjct: 184 VPGV-GKVTQARLEQLGIHTVGDLATHSLEELAHYFG-RYGRRLYELARGIDEREVQ 238
>gi|449542568|gb|EMD33547.1| hypothetical protein CERSUDRAFT_57122 [Ceriporiopsis subvermispora
B]
Length = 628
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/425 (26%), Positives = 171/425 (40%), Gaps = 75/425 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY EQ + LP V Q++ LIAV Y AR YG+ R +
Sbjct: 37 RVVALCDSDAFYAACEQVRLDLDPKLPLVVQQWD-----SLIAVNYPARTYGITRMEKIT 91
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSIL---ARKG 112
EAK CP++ +V V + K L YR +++ +
Sbjct: 92 EAKRKCPELVVVHVATYKEGEKEPGYWENPDTHTHKVSLDHYRRESMKIIQMFKDGMPTA 151
Query: 113 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEAL---------KSHILG 156
E+ASIDE ++D T LA+ P ++ D + ++
Sbjct: 152 EIEKASIDEAFIDFTRPVREEILKRYPYLAKVPADAPQGADSPLPPPPPICWDNRGTVIP 211
Query: 157 LESKDGNDSKATVKEWLCRCDADH------------RDKLLACGVLIVTELRMQVLKETE 204
L + +D + + DH D L+ + +R ++ +
Sbjct: 212 LSPAEVHDPQDSTTVQPNTTPDDHDGVSEDDTSTTWHDVALSIAAEYMMTIRHEIYTKLG 271
Query: 205 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 264
++ SAGIA NK LAKL + KP Q+ + +++ L +P +K++ LGGKLG +L E
Sbjct: 272 YSLSAGIARNKFLAKLTASYKKPNNQSILRDAAIPNYLRPMPFQKIRFLGGKLGKALAQE 331
Query: 265 LGVTTVGDLL----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
V+TVGDLL KF ED + W++ I R +S QA K KS
Sbjct: 332 YDVSTVGDLLSMQRKFGEDSI----------WVYEILRYVS----QAYATCKKSAVNKSM 377
Query: 321 PGPRALKTVASV----QHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDS 375
+ L + HW+ L EL+ RL E + T+ LH S
Sbjct: 378 LASKNLLNPVTKPSQGHHWIRVLAAELALRLNEARENIPTLWPKTIVLHVRQGYDSFRSK 437
Query: 376 RKKFP 380
+ FP
Sbjct: 438 QAAFP 442
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 129/296 (43%), Gaps = 64/296 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P LRG P VV G + A YEAR YGV+ +M G
Sbjct: 2 RKILHIDMDAFYASVEQRDDPALRGKP--VVVGGSAPRGVVCAASYEARKYGVRSAMPGV 59
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDAA 130
A+ +CPQ V D + YR ++ I LA E S+DE YLD+T
Sbjct: 60 TARRLCPQAIFV-------APDFARYRAVSRQIREIFLAHTDLVEPLSLDEAYLDVTAPR 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
A + T +A+++ I
Sbjct: 113 IASSSAT-------ATAQAIRAQIF----------------------------------- 130
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ T T SAGIA NK LAK+AS NKP Q + + V+ L L + ++
Sbjct: 131 ----------ETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQVEAFLTPLKVGRI 180
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ GK+ ELGV TVGDL +F+ D+LQ +G G L+ ARGI VQ
Sbjct: 181 PGV-GKVAERKLAELGVATVGDLRRFTLDELQLRFG-RFGAALYRRARGIDERPVQ 234
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 173/406 (42%), Gaps = 77/406 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY V Q P L G AV + G + A YEAR +GV+ +M G
Sbjct: 9 RKIIHVDMDAFYASVAQLDDPSLVGKAIAVG--GSGRRGVISAASYEARKFGVRSAMAGS 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + V K D Y+ V I E S+DE YLD+T
Sbjct: 67 LAIKLCPHLIFV-------KTDFERYKEISDRVRKIFFEYTDLVEPLSLDEAYLDVT--- 116
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+K GN S + L
Sbjct: 117 ---------------------------ENKKGNPSAS----------------------L 127
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ + T SAGI+ NK +AK+AS +NKP Q TVP V L+ L IKK
Sbjct: 128 IALEIRQKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPPEEVIPFLEVLDIKKF 187
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + G+ T DL S + L E++G +G + +NI RGI EV+
Sbjct: 188 YGVGKVMKEKMYRH-GIYTGLDLKGKSIEFLSENFG-KSGAYYYNIVRGIHNSEVKPSRT 245
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
KS + ++F + +AS L +L +SE + L+++K T+TL K
Sbjct: 246 RKSLAAERTFS-----ENIASEIFMLEKLA-PISEEVERRLKKSKVAGKTVTL-----KI 294
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 414
SD + SK+ PL + +T LFQ G++ + G+
Sbjct: 295 KYSDFTLQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGI 340
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 136/310 (43%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRGLP AV + G + A YEAR +GV +M
Sbjct: 12 RKIVHVDMDAFYASVEQRDNPELRGLPVAV--GSPAARGVVAAASYEARKFGVHSAMPSV 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A+ CP + V K Y+ ++ ++ A E S+DE YLD+T+
Sbjct: 70 TAQRKCPDLIFV-------KPRFDVYKAVSLQIRTVFAEYTPMIEPLSLDEAYLDVTENL 122
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ M E+ E
Sbjct: 123 KGM----------EIATE------------------------------------------ 130
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ T T SAGI++NK LAK+AS NKP Q + + ++ LP+KK
Sbjct: 131 IAAEIRAKIKATTGLTASAGISYNKFLAKMASDQNKPDGQFVITPKNGPAFVERLPVKKF 190
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G +Q LG+ T DL + + D L E +G +G + + IARGI +V+ +
Sbjct: 191 HGVGPATAEKMQR-LGIETGADLKERTLDFLVEHFG-KSGPYFYGIARGIDNRQVKPDRV 248
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 249 RKSIGAEDTF 258
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 140/311 (45%), Gaps = 65/311 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMRG 70
R I HVD+D F+ VEQR P+LRG P V+ + G G++A YEAR +G+ +M
Sbjct: 13 RKIIHVDMDAFFAAVEQRDYPELRGQP--VIVGGDPAGRGVVATCSYEARRFGIHSAMTA 70
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDA 129
A+ +CPQ V + + +YR A +V++IL + E S+DE +LD+T A
Sbjct: 71 ARARSLCPQAIFV-------RPRMEAYREASRQVMAILRSYTPLVEPLSLDEAFLDVTAA 123
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ DG + +E L R HR
Sbjct: 124 -----------------------------TADGILAVEIAREILDRI---HR-------- 143
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
ET T SAG+++NK+LAKLAS KP +P L LP+ K
Sbjct: 144 ------------ETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPPKRGLDFLAPLPVGK 191
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G L + +G+ TV DL ++++L +G G W + +ARGI VQ
Sbjct: 192 LHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRCFG-KAGAWFYEVARGIDRRPVQPTR 249
Query: 310 LPKSHGSGKSF 320
KS G+ ++F
Sbjct: 250 QRKSVGTERTF 260
>gi|420334490|ref|ZP_14836112.1| DNA polymerase IV [Shigella flexneri K-315]
gi|391268181|gb|EIQ27109.1| DNA polymerase IV [Shigella flexneri K-315]
Length = 351
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNTALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|157868888|ref|XP_001682996.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
gi|68223879|emb|CAJ04143.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
Length = 760
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 183/451 (40%), Gaps = 119/451 (26%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEA 59
+P + P + R IAH+D+DCFY QVE R R P + Q+ G LIAV Y A
Sbjct: 4 LPTSLPGADPMRCIAHMDMDCFYAQVEAVRLGVDCRVTPLVLSQW-----GSLIAVNYPA 58
Query: 60 RNYGVKRSMRGDEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSE 103
R GV+R EA+ +CP + + P R K L YR+A +
Sbjct: 59 RARGVRRFSNVSEAQALCPGLIVALSPSYRMGEAVSQYHPHPVQDSYKLSLEPYRHASRQ 118
Query: 104 VVSILARKG--RCERASIDEVYLDLTDAAEAMLAET----PPESLDEVDEEALKSHILGL 157
+ SILA + E+ S+DE Y+D+T+AA LAE SLD +++ ++
Sbjct: 119 IFSILAATPGVQVEKGSVDEAYVDVTEAARRELAEVRAAAAGASLDPLED------VMEP 172
Query: 158 ESKDGNDSKATVKEWLC--------------------RCDAD-----------------H 180
++ D +A ++ WL C A+
Sbjct: 173 STRLIEDRRAEMEAWLSARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYAE 232
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT-TVPFSSVK 239
R LL +V LR ++ E + CSAGIAHN++LAK S +KP QQT +P S
Sbjct: 233 RCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSAS 292
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTT---------------------VGDLLKFSE 278
L + LP+ ++ GGKLG ++ G T VGD
Sbjct: 293 ALFE-LPLSGLRGFGGKLGAAVSAVCGGVTECREAWLVPLAQLRKLDGTCDVGDGEDAEG 351
Query: 279 DK-----------------------LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
D+ LQ T +++ RG++ + + R L K+
Sbjct: 352 DREGRKRRPIARKRGRAASASLERDLQGLVAHTTSLYVFYRLRGLAEDTILNRPLSKTII 411
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSER 346
+ K+F R +V V+ W+ L EL R
Sbjct: 412 ASKNF--GRITTSVEMVRRWIIVLTSELCSR 440
>gi|321259275|ref|XP_003194358.1| eta DNA polymerase [Cryptococcus gattii WM276]
gi|317460829|gb|ADV22571.1| eta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 689
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 159/384 (41%), Gaps = 58/384 (15%)
Query: 2 PVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARN 61
P A ++ R IAH D+D Y Q EQ + +P Q+ +IAV Y AR
Sbjct: 25 PQALTTANPLRTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQ-----SIIAVNYPARK 79
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVV 105
YG+KR ++AK++CP + + V R K L YR ++
Sbjct: 80 YGIKRFTSIEDAKKMCPHLVVQHVATYRNGENEAGYWDNVNPRTHKVSLDVYRRESLRIL 139
Query: 106 SILARK---GRCERASIDEVYLDLTD-------AAEAMLAETPPESLDEVDEEALKSH-- 153
+I K G E+ASIDE +LDLT AA L++ P ++ + D
Sbjct: 140 AIFKEKIPRGEIEKASIDEAFLDLTPMVIEKLLAAHPYLSKVPEDAPNGFDSPLPPPPPI 199
Query: 154 ----------ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKET 203
I G E G D + +E D + D R
Sbjct: 200 DWSKAGSVFPIDGKEDGTGTDDEEGGQEDERSEDGEGPDA------------RASSSDRD 247
Query: 204 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 263
+ A ++++ L S KP QT + ++V L+ ++ LGGKLG ++
Sbjct: 248 SWEDWALCMGGELMSNLCSAWRKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQ 307
Query: 264 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 323
E TVGD+L S D +Q+ +G W++NI RGI EV R+ KS + KS
Sbjct: 308 EFDAKTVGDMLTVSLDAMQKKFG-EESIWVYNILRGIDHSEVTERVSTKSMLASKSIRP- 365
Query: 324 RALKTVASVQHWLNQLCEELSERL 347
A+ + HWL+ L EL RL
Sbjct: 366 -AVTSPQQGYHWLSILAGELKVRL 388
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 152/354 (42%), Gaps = 73/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPALRGKPVVVA----WRGMRSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + + VP D + Y+ +V I R TD
Sbjct: 61 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFQRH---------------TDM 98
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE L + + G AT
Sbjct: 99 IE-------PLSLDEA--------YLDVTAPKGELRTATE-------------------- 123
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +R Q+ ETE T SAGIA NK LAK+AS KP Q + V+ L LP+ K
Sbjct: 124 -IAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRPHRVEAFLTPLPVNK 182
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G + L ELG+ TVGDL SE +L+ +G + G L+ ARGI V++
Sbjct: 183 VPGVGKVMEAKL-AELGIATVGDLRARSEAELEARFG-SFGLRLYQRARGIDERPVESDQ 240
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L +L+E+ + + +RIA T+ L
Sbjct: 241 PVQSISSEDTFAEDLALDA-------LEPAIRQLAEKTWNATRRTERIARTVVL 287
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 147/336 (43%), Gaps = 64/336 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQ P+LRG A+V + G + A YEAR YGV+ +M G
Sbjct: 3 RKIIHIDMDAFYASVEQLDNPELRG--KAIVVGGSSERGVVAAASYEARQYGVRSAMSGI 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK+ CP + V R K R E ++ E ++DE +LD+T
Sbjct: 61 LAKKKCPHLIFVPPRFDRYKEISRQIRQVFHEYTDLV------EPLALDEAFLDVT---- 110
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
E+K G S LI
Sbjct: 111 --------------------------ENKIGCPS----------------------ATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ + T+ T SAGI+ NK LAK+AS NKP Q T+ V+ L++L IKK
Sbjct: 123 AQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINPEEVEAFLEALEIKKFF 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G K + + G+ T DL S D L+E +G G + I RGI V L
Sbjct: 183 GIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFG-KAGKAYYYIVRGIHNSPVSPDRLT 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G+ ++F L + +++ L + EELS RL
Sbjct: 241 KSVGTERTF--DENLSSEVYLENKLAHIVEELSLRL 274
>gi|146085849|ref|XP_001465374.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
gi|134069472|emb|CAM67795.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
Length = 760
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 182/447 (40%), Gaps = 111/447 (24%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IAH+D+DCFY QVE R R P A+ Q+ G LIAV Y AR GV+R
Sbjct: 15 RCIAHIDMDCFYAQVEAVRLGVDCRVTPLALSQW-----GSLIAVNYPARARGVRRFSNV 69
Query: 71 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARKG-- 112
EA+ +CP + + P R K L YR+A +V SILA
Sbjct: 70 SEAQALCPGLIVALSPSYRMGESVSQYHPHPVQDSYKISLEPYRHASRQVFSILAATPGV 129
Query: 113 RCERASIDEVYLDLTDAAEAMLAET----PPESLDEVDE---------EALKSHILGLES 159
+ E+ S+DE Y+D+T+AA LAE SLD + + E ++ + S
Sbjct: 130 QVEKGSVDEAYVDVTEAARQELAEVRAAAAGASLDPLADVMEPSTRLIEDRRAEMEAWFS 189
Query: 160 KDGNDSKATVKE---WLCR--CDAD-----------------HRDKLLACGVLIVTELRM 197
G A E L R C A+ R LL +V LR
Sbjct: 190 ARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGVDDAAYAERCLLLCAASRVVHRLRQ 249
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT-TVPFSSVKGLLDSLPIKKMKQLGGK 256
++ E + CSAGIAHN++LAK S +KP QQT +P S L + LP+ ++ GGK
Sbjct: 250 RIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALFE-LPLSGLRGFGGK 308
Query: 257 LGTSLQNELGVTT---------------------VGD----------------------- 272
LG ++ G T VGD
Sbjct: 309 LGAAVSAVCGGVTECREAWLVPLAQLCKLDGTCDVGDGADAEGDREGRKRRPIAGKRGRT 368
Query: 273 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 332
F E LQ T +++ RG++ + + R L K+ + K+F R +V V
Sbjct: 369 ASPFLERDLQGLVAHTTSQYVFYRLRGLAEDTILNRPLSKTIIASKNF--GRITTSVEMV 426
Query: 333 QHWLNQLCEELSERLCSDLEQNKRIAH 359
+ W+ L E LCS E+ + H
Sbjct: 427 RRWVIVLTSE----LCSRYEEFTALYH 449
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 250 NRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|19568909|gb|AAL91966.1|AF483103_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|295397332|ref|ZP_06807424.1| DNA-directed DNA polymerase IV [Aerococcus viridans ATCC 11563]
gi|294974406|gb|EFG50141.1| DNA-directed DNA polymerase IV [Aerococcus viridans ATCC 11563]
Length = 424
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 136/318 (42%), Gaps = 64/318 (20%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQY-NEWKGGGLIAVG-YEARNYG 63
P G+R I HVD+D F+ VEQR P RG P + ++ E G G+++ YEAR YG
Sbjct: 12 PKIDGSRKILHVDMDAFFASVEQRDNPAYRGKPVIIARHPKENSGKGVVSTASYEARKYG 71
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 122
V +M EA +CPQ V + + YR +V I R E SIDE
Sbjct: 72 VHSAMSAAEAYRLCPQGIFVS-------GNYALYREVSEQVREIFKRYTDIIEPLSIDEA 124
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
+LD+TD + + P ++D
Sbjct: 125 FLDVTDNKKGI-----PYAMD--------------------------------------- 140
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+ E++ + KE TCS G+++NK +AKLAS KP T + L
Sbjct: 141 --------VAKEIQETIYKELNLTCSIGVSYNKFIAKLASDYQKPFGMTVITPKRAIPFL 192
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+ LPI+ +G + + +EL + T DL K S+D+ + +G G L+ RG+
Sbjct: 193 EQLPIEDFYGVGTRSAEKM-HELAIYTGADLKKLSQDECIQYFG-KAGLALYERVRGVDD 250
Query: 303 EEVQARLLPKSHGSGKSF 320
V+ + KS G ++F
Sbjct: 251 RPVKVTRIRKSIGKERTF 268
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 135/309 (43%), Gaps = 62/309 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+L G P AV E G + A YEAR YG++ +M
Sbjct: 8 RKIIHVDMDAFYASVEQRDNPELMGKPVAVGGSRE--RGVVAAASYEARKYGIRSAMASS 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A CP I V K Y+ + I E++ + TD E
Sbjct: 66 IAYRKCPHIIFV-------KPHFEKYKEVSKQ---------------IREIFFEYTDLVE 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K +A I
Sbjct: 104 -------PLSLDE-----------------------------AYLDVTENKKGIATATRI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ +ET+ + SAGI+ NK +AK+AS +NKP Q T+ V L++LPIKK
Sbjct: 128 AKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTIMPDDVIPFLENLPIKKFY 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G K ++ +LG+ DL ++ L +G +GT +NI RG+ V+ +
Sbjct: 188 GIGEKTAEKMK-KLGIHFGRDLKQWDLPLLVREFG-KSGTHYYNIVRGLQKSTVKPDRIR 245
Query: 312 KSHGSGKSF 320
KS G+ ++F
Sbjct: 246 KSIGAERTF 254
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 184/406 (45%), Gaps = 77/406 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQ P+LRG P AV + G + A YEAR +GV+ +M G
Sbjct: 8 RKIIHIDMDAFYASVEQLDNPELRGKPLAV--GGSGQRGVVAAASYEARKFGVRSAMSGA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDAA 130
A+++CP++ V K + Y+ ++ I L E S+DE YLD+T
Sbjct: 66 MARKLCPELIFV-------KTNFDRYKEVSKQIRKIFLEYTDLVEPLSLDEAYLDVT--- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+K GN S + + E
Sbjct: 116 ---------------------------ENKKGNPSASMIAE------------------- 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R ++ K+T SAGI+ NK +AK+AS +NKP Q T+ V L++L +KK
Sbjct: 130 ---EIRKKIKKKTGLNASAGISINKFVAKIASDINKPNGQKTLSPEEVVPFLETLDVKKF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ LG+ T DL S + L+E++G +G + N+ RGI +V+
Sbjct: 187 YGV-GKVTKEKMYRLGIYTGKDLKGKSLEFLEENFG-KSGAFYHNVVRGIHNSKVKPSRT 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
KS + +F + ++S + ++ + +E++ + L ++K T+TL K
Sbjct: 245 QKSLAAEHTF-----FENISS-EIFMMERLDEIAAEVEKRLHKSKLAGKTVTL-----KI 293
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 414
SD + SK+ PL + ++ D LFQ ++E + G+
Sbjct: 294 KYSDFTLQTRSKTLPLFVASKELILDVVKELLFQERMKESVRLLGI 339
>gi|406601529|emb|CCH46835.1| N-acetyltransferase [Wickerhamomyces ciferrii]
Length = 657
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 200/450 (44%), Gaps = 75/450 (16%)
Query: 3 VARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPT--AVVQYNEWKGGGLIAVGYEAR 60
+ + SS +IAH+D++ F+ QVEQ + GL T AVV +W LIAV Y+AR
Sbjct: 33 IDKAYSSPLSVIAHIDVNAFFAQVEQIR----LGLSTEDAVVCV-QW--SSLIAVSYKAR 85
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARG--------------------KADLSSYRNA 100
YG+ R + AK CP ++ + V R K L YR
Sbjct: 86 EYGITRMDTLENAKLKCPILKAIHTAVFRKGENFWRYHDDDNEFPSPIDHKVSLDPYRRE 145
Query: 101 GSEVVSIL-ARKGRCERASIDEVYLDLTDAAEAMLAETPPE---SLDEVDEEALKSHI-- 154
+++ I + E+AS+DE ++DL + E P+ ++ +D + I
Sbjct: 146 SRKILKIFKSIVDLVEKASVDESFMDLGRLVIKRVFEMIPDLQKQIENLDSDGFLPLIPD 205
Query: 155 -LGLE------SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 207
LE + + + + +K+W D L+ G I E+R+QV KE +T
Sbjct: 206 GFTLEVTGDVITNEFDSTSLIIKDW--------DDLLMIIGGQITNEIRLQVQKELGYTL 257
Query: 208 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 267
SAG+ K +AKLASG KP QT V +S+ L + +GGK G ++ +L
Sbjct: 258 SAGVGRVKTIAKLASGFRKPDNQTIVRNNSINNFLKNFDFTDFWSMGGKTGEFIKMKLS- 316
Query: 268 TTVGDLLKFSEDKLQESYGFN----------TGTWLWNIARGISGEEVQARLLPKSHGSG 317
+ D + F ++ +Y N + L+ + RG + + +R++ KS S
Sbjct: 317 PPLEDSIAF----IRNNYDLNELQDYLEDKELASKLYQLIRGEYMQSLSSRIILKSMNSN 372
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN--KRIAHTLTLHASAFKSSDSDS 375
K+ +++K++ W+ +L +RL ++N K T+++H F+S ++ +
Sbjct: 373 KNIRF-KSVKSLGDSIQWIKVFSADLYQRLIETNDENGYKTRPKTISIH---FRSINNFN 428
Query: 376 RKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 405
+ S PL I E LFQ G+
Sbjct: 429 QPHSKQSSLPL----VPIDELESVLFQYGV 454
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 157/351 (44%), Gaps = 70/351 (19%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VEQ P LRG A+ + G + A YEAR YGV+ +M G A
Sbjct: 9 IIHVDMDAFYASVEQLDNPDLRG--KAIAVGGGGERGVVSAASYEARKYGVRSAMAGALA 66
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
+++CP + V K + YR +++ S+ E S+DE YLD+T
Sbjct: 67 RKLCPDLIFV-------KTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVT----- 114
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
E+K G S + W+ +C
Sbjct: 115 -------------------------ENKVGMPSATVIASWIRQC---------------- 133
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
+ ++T SAGI+ NK +AK+AS +NKP Q T+P V L+ L IKK
Sbjct: 134 ------IKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIKKFYG 187
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+G K + G+ T DL S++ L +++G +G + ++I RGI EV+ + K
Sbjct: 188 IGKKTAEKMYLH-GIFTGMDLKLKSKEYLSDNFG-KSGAYYYDIVRGIQHSEVKPNRIRK 245
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
S + ++F + + S L +L E ++E + LE++K T+TL
Sbjct: 246 SLAAERTFR-----ENITSEIFMLEKL-EHIAEEVERRLEKSKVAGKTITL 290
>gi|71746744|ref|XP_822427.1| DNA polymerase eta [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832095|gb|EAN77599.1| DNA polymerase eta, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 525
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 163/375 (43%), Gaps = 54/375 (14%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IAH+D+DCFY QVE R R P + Q+ G LIAV Y AR +G+ R
Sbjct: 2 RCIAHIDMDCFYAQVEAVRLGVDCRTEPYVLSQW-----GNLIAVNYPARKFGIGRFDTV 56
Query: 71 DEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSIL-ARKG- 112
+A E CP +++ V A G K L YR A ++ IL + G
Sbjct: 57 TDALEKCPHVKISHVATYAAGEVEYRYHENPSKQTHKVALEPYREASRKIFRILDSFDGV 116
Query: 113 RCERASIDEVYLDLTDAAE------AMLAETPPESLDEVDEEAL------KSHILGLESK 160
E+ S+DE +LD+T AA +L+ L++V + ++ I +
Sbjct: 117 EVEKGSVDEAFLDVTKAAHMKQGEMGLLSSQGELRLEDVADPTTIVIPSRQAEIAAWLKE 176
Query: 161 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 220
G + L LLA +V +R ++ E + CSAGIAHNK+LAK
Sbjct: 177 HGREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAKS 236
Query: 221 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG---------VTTVG 271
S +KP QQT + V ++ LP K ++ GGK G ++ G + ++
Sbjct: 237 ISARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKFGEVVRLACGGKETCREAWLHSLC 296
Query: 272 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 331
+ KF E Y + RG +++ R + KS + K+F P + T
Sbjct: 297 AMSKFFESVGDAEYAYRR-------LRGYDEGKIRERSISKSLMASKAFSPPSS--TANG 347
Query: 332 VQHWLNQLCEELSER 346
VQ W+ L ELS R
Sbjct: 348 VQKWVTVLSGELSAR 362
>gi|288906138|ref|YP_003431360.1| DNA polymerase IV [Streptococcus gallolyticus UCN34]
gi|288732864|emb|CBI14443.1| putative DNA polymerase IV [Streptococcus gallolyticus UCN34]
Length = 365
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + KE TCSAG+++NK LAKLAS KP T + + L LPI
Sbjct: 132 AIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLKKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS V++
Sbjct: 192 EKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + + + + E+S +R+ L++N ++ T+ L
Sbjct: 250 NRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVL 299
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 172/398 (43%), Gaps = 76/398 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR + RG P V +E +GG + YEAR +G++ +M
Sbjct: 10 RKIIHIDMDAFYASVEQRDNEEYRGKPIVVGGPHEGRGGVVATASYEARKFGIRSAMPSK 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+A ++CP V + + Y+ ++ I +R E S+DE YLD+T+
Sbjct: 70 KALQLCPHAIFV-------RPRFAVYKEVSQQIREIFSRYTDLIEPLSLDEAYLDVTN-- 120
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL-LACGV 189
DKL + +
Sbjct: 121 ---------------------------------------------------DKLNIGSAI 129
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +++ + E T SAG++ NK +AK+AS +NKP + S ++ ++ LP++K
Sbjct: 130 EIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPNGLKFIGPSGIENFMELLPVEK 189
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ GK+ ++G+ T DL K +ED++ +G G + + I RG+ EVQ
Sbjct: 190 FFGV-GKVTAEKMKKMGLHTGADLKKLTEDEMHRHFG-KAGRFYYQIVRGLDNREVQPHR 247
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS G+ +F L T+A + L+++ ++ R LE+ + T+TL K
Sbjct: 248 ETKSMGAEDTF--AYDLTTLAEMNAELDKIAVTVANR----LERYQLKGRTVTLKV---K 298
Query: 370 SSDSDSRKKFPSKSCP---LRYGTAKIQEDTFNLFQAG 404
SD + S + P L TA ++ F F+ G
Sbjct: 299 YSDFKQITRNQSSAAPIADLESITATAKQLLFTSFEEG 336
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 148/336 (44%), Gaps = 64/336 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P+LRG AV E G + A YEAR YGV+ +M
Sbjct: 3 RKIIHVDMDAFYASVEQLDFPELRGKALAVGGSEER--GVIAAASYEARKYGVRSAMSAM 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK+ CP + V+ R K R+ E ++ E ++DE +LD+T
Sbjct: 61 MAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLV------EPLALDEAFLDVT---- 110
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
E+K G S LI
Sbjct: 111 --------------------------ENKIGCPS----------------------ATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+RM++L+ T T SAGI+ NK LAK+AS NKP Q T+ V L+ L IKK
Sbjct: 123 AHEIRMKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKKFF 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G K + + LG+ T DL S + L E +G G ++I RG+S V+
Sbjct: 183 GIGKKTADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNRTI 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G+ ++F L + ++ L+ L EELS RL
Sbjct: 241 KSVGTERTF--DENLSSEVFIETKLDMLVEELSLRL 274
>gi|71656413|ref|XP_816754.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70881903|gb|EAN94903.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 171/382 (44%), Gaps = 53/382 (13%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I H+D+DCFY QVE R R P + Q+ G LIAV Y AR G+ R
Sbjct: 2 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 56
Query: 71 DEAKEVCPQIELVQVPV-------------ARG---KADLSSYRNAGSEVVSIL-ARKG- 112
++A+E CP +++ V AR K L YR A ++ +IL + +G
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN---DSKATV 169
E+ S+DE YLD+T AA+ LA + SH+ + + N D +A +
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI------RLPSAQCSSHLEDVMHPETNVIPDRRAEI 170
Query: 170 KEWLC----------------RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
WL + +H+ LL +V +LR ++ +E + CSAGIAH
Sbjct: 171 DAWLFEKGKEFNEIFDTALHPQATVEHQ-LLLGAASRVVWKLREKIYQELCYDCSAGIAH 229
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGD 272
NK+LAK S +KP QQT + V + P + ++ GGK G S+ G D
Sbjct: 230 NKILAKSISSRHKPNQQTLLLPDRVASAVWDAPYQSIRGFGGKFGESVCRACGNAELFRD 289
Query: 273 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 332
+KLQ G + G + + R E+++ + + K+ + KSF P + + +
Sbjct: 290 AWLVPLEKLQSVLGVDDGAYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPTS--SSEGL 347
Query: 333 QHWLNQLCEELSERLCSDLEQN 354
+ W+ L EL R E N
Sbjct: 348 RKWITVLSSELCARYKEFCETN 369
>gi|19568885|gb|AAL91954.1|AF483091_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 148/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ + +GG + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAI-GGSRARGGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFNLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 250 NRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|332715601|ref|YP_004443067.1| DNA polymerase IV [Agrobacterium sp. H13-3]
gi|325062286|gb|ADY65976.1| DNA polymerase IV [Agrobacterium sp. H13-3]
Length = 359
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 138/315 (43%), Gaps = 64/315 (20%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D++ R I H+D+D FY VEQR P LRGLP AV G + A YEAR +GV
Sbjct: 2 DNTAVRKIIHIDMDAFYASVEQRDNPALRGLPVAV--GGSAARGVVAAASYEARTFGVHS 59
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLD 125
+M AK CP +L+ VP YR ++ I A E S+DE YLD
Sbjct: 60 AMPSVTAKRKCP--DLIFVP-----PRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLD 112
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T+ + M E+ E
Sbjct: 113 VTENLKGM----------EIATE------------------------------------- 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++L
Sbjct: 126 -----IALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEAL 180
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+KK +G ++ G+ T DL S LQ+ +G +G + +NIARGI +V
Sbjct: 181 AVKKFHGVGPATAERMKRH-GIETGLDLKSKSLGFLQQHFG-KSGPYFYNIARGIDERQV 238
Query: 306 QARLLPKSHGSGKSF 320
+ + KS G+ +F
Sbjct: 239 KPDRIRKSVGAEDTF 253
>gi|296083109|emb|CBI22513.3| unnamed protein product [Vitis vinifera]
Length = 1123
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 148/341 (43%), Gaps = 66/341 (19%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRS 67
S +I H+D+DCF+V V R P+L+ P AV N KG I+ Y AR+YGVK
Sbjct: 370 SQKNVIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAG 429
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 126
+ +AK +CP LV P + +Y + +IL + + + S DE +L++
Sbjct: 430 IFVRDAKALCPH--LVIFPY-----NFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEV 482
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
D SK+G+
Sbjct: 483 MD------------------------------SKEGDPE--------------------- 491
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LP
Sbjct: 492 ---LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLP 548
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK + +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 549 IKALPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVG 607
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G+ ++ G R + +H+L LC+E++ RL
Sbjct: 608 VIQESKSIGAEVNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 646
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 250 NRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTFILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 NRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 250 NRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 157/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V +I R E S+DE YLD+T+
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GIE--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 250 NRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVVALLQDHKKLGKTIVL 299
>gi|418408826|ref|ZP_12982140.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
gi|358004842|gb|EHJ97169.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
Length = 359
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 138/315 (43%), Gaps = 64/315 (20%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D++ R I H+D+D FY VEQR P LRGLP AV G + A YEAR +GV
Sbjct: 2 DNTAVRKIIHIDMDAFYASVEQRDNPALRGLPVAV--GGSAARGVVAAASYEARTFGVHS 59
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLD 125
+M AK CP +L+ VP YR ++ I A E S+DE YLD
Sbjct: 60 AMPSVTAKRKCP--DLIFVP-----PRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLD 112
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T+ + M E+ E
Sbjct: 113 VTENLKGM----------EIATE------------------------------------- 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++L
Sbjct: 126 -----IALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEAL 180
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+KK +G ++ G+ T DL S LQ+ +G +G + +NIARGI +V
Sbjct: 181 AVKKFHGVGPATAERMKRH-GIETGLDLKSKSLGFLQQHFG-KSGPYFYNIARGIDERQV 238
Query: 306 QARLLPKSHGSGKSF 320
+ + KS G+ +F
Sbjct: 239 KPDRIRKSVGAEDTF 253
>gi|19568893|gb|AAL91958.1|AF483095_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 147/338 (43%), Gaps = 73/338 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAKEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELER 266
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 133/297 (44%), Gaps = 66/297 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P+LRG P V W G + A YEAR +G+ +M
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGKPVVVA----WTGPRSVVCAASYEARRFGIHSAMS 66
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
+A+ +CP + VP D + YR+ +V I AR TD
Sbjct: 67 AIKAERLCPHA--IYVP-----PDFNRYRDVSRQVRQIFARH---------------TDL 104
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE A + + +C L
Sbjct: 105 IE-------PLSLDE----------------------AYLDVTVNKCG-------LPSAT 128
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R Q+ +ET T SAG+A NK LAK+AS NKP V + V L+ LP++K
Sbjct: 129 EVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPNKVLAFLEPLPVRK 188
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ + GK+ + +LG+ TVGDL S +L+ +G G L+ +ARGI EVQ
Sbjct: 189 VPGV-GKVTQARLEQLGIQTVGDLATHSAQELEHYFG-RYGRRLYELARGIDEREVQ 243
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 149/342 (43%), Gaps = 64/342 (18%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P+ R I HVD+D FY VEQ P LRG P AV K G + A YEAR YGV+
Sbjct: 2 PNDFPLRKIIHVDMDAFYASVEQLDNPDLRGKPIAVG--GSSKRGVVAAASYEARKYGVR 59
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M A+ CP + V+ R K RN E + E S+DE YLD
Sbjct: 60 SAMSSVLAQRNCPGLIFVKPRFERYKEISHQIRNIFYEYTDL------VEPLSLDEAYLD 113
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T +K GN S +
Sbjct: 114 VT------------------------------VNKKGNPSAS------------------ 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
LI E+R ++ SAGI+ NK +AK+AS +NKP Q TV V L+ L
Sbjct: 126 ----LIAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVSLFLEEL 181
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I+K + GK+ +LG+ T DL + + L+ ++G N G++ +N+ RGI V
Sbjct: 182 EIRKFYGV-GKVTAEKMYKLGIFTGKDLKLKTLEFLEGNFGKN-GSYYYNVVRGIHTSPV 239
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ +PKS G+ ++F L + + L+ + EEL +RL
Sbjct: 240 KPHRIPKSVGAERTF--NENLSSEIFMLERLDHIAEELEKRL 279
>gi|374338723|ref|YP_005095440.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
gi|372284840|emb|CCF03144.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
Length = 365
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + +E TCSAG+++NK LAKLAS KP T + + L+ LPI
Sbjct: 132 AIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS V++
Sbjct: 192 EKFYGVGKRSVEKL-HQLGVFTGADLLEMPEMTLIDLFG-RFGYDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + + + + E+S +R+ L++N ++ T+ L
Sbjct: 250 NRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVL 299
>gi|306832183|ref|ZP_07465337.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|386338579|ref|YP_006034748.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|304425622|gb|EFM28740.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334281215|dbj|BAK28789.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 381
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 157/361 (43%), Gaps = 76/361 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 27 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 86
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 87 SSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEAYLDVT 139
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 140 ENK------------------------LGIKS---------------------------- 147
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + KE TCSAG+++NK LAKLAS KP T + + L LPI
Sbjct: 148 AIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLKKLPI 207
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS V++
Sbjct: 208 EKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKS 265
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLH 364
+ KS GS +++ + + + + E+S +R+ L++N ++ T+ L
Sbjct: 266 NRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLK 316
Query: 365 A 365
Sbjct: 317 V 317
>gi|19568905|gb|AAL91964.1|AF483101_1 DNA polymerase DinB [Escherichia coli]
gi|19568911|gb|AAL91967.1|AF483104_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|325979102|ref|YP_004288818.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|325179030|emb|CBZ49074.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 365
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + +E TCSAG+++NK LAKLAS KP T + + L+ LPI
Sbjct: 132 AIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS V++
Sbjct: 192 EKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + + + + E+S +R+ L++N ++ T+ L
Sbjct: 250 NRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVL 299
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 153/356 (42%), Gaps = 77/356 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG---GLIAVG-YEARNYGVKRS 67
R I H+D+D FY VEQR P+L+G P V GG G++A YEAR YGV+ +
Sbjct: 6 RKIIHIDMDAFYASVEQRDFPELKGKPVVV-------GGEHRGVVAAASYEARKYGVRSA 58
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M AK+ CPQI V K Y+ ++ +I + + T
Sbjct: 59 MSSVVAKKKCPQIIFV-------KPRFHRYKEVSEQIRTI---------------FFEYT 96
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D E P SLDE D H K +
Sbjct: 97 DLVE-------PLSLDE-----------------------------AYLDVTHNKKGIVS 120
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L++LPI
Sbjct: 121 ANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLENLPI 180
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ +G + +LG+ DL + + L +G G ++I RGI EV+
Sbjct: 181 ERFYGIGNVTANKMY-QLGIYKGKDLKEKPLEYLVTHFG-KMGGHYYDIVRGIHRSEVKP 238
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G ++ + T + L +L +EL R +E+ K +LTL
Sbjct: 239 HRIAKSVGVEHTYVDD--IDTEQDIDKQLMRLAQELYRR----IEKKKVKGKSLTL 288
>gi|19568865|gb|AAL91944.1|AF483081_1 DNA polymerase DinB [Escherichia coli]
gi|19568869|gb|AAL91946.1|AF483083_1 DNA polymerase DinB [Escherichia coli]
gi|19568871|gb|AAL91947.1|AF483084_1 DNA polymerase DinB [Escherichia coli]
gi|19568873|gb|AAL91948.1|AF483085_1 DNA polymerase DinB [Escherichia coli]
gi|19568875|gb|AAL91949.1|AF483086_1 DNA polymerase DinB [Escherichia coli]
gi|19568877|gb|AAL91950.1|AF483087_1 DNA polymerase DinB [Escherichia coli]
gi|19568879|gb|AAL91951.1|AF483088_1 DNA polymerase DinB [Escherichia coli]
gi|19568881|gb|AAL91952.1|AF483089_1 DNA polymerase DinB [Escherichia coli]
gi|19568889|gb|AAL91956.1|AF483093_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|359475496|ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vitis vinifera]
Length = 1175
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 148/341 (43%), Gaps = 66/341 (19%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRS 67
S +I H+D+DCF+V V R P+L+ P AV N KG I+ Y AR+YGVK
Sbjct: 392 SQKNVIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAG 451
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 126
+ +AK +CP LV P + +Y + +IL + + + S DE +L++
Sbjct: 452 IFVRDAKALCPH--LVIFPY-----NFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEV 504
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
D SK+G+
Sbjct: 505 MD------------------------------SKEGDPE--------------------- 513
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LP
Sbjct: 514 ---LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLP 570
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK + +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 571 IKALPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVG 629
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G+ ++ G R + +H+L LC+E++ RL
Sbjct: 630 VIQESKSIGAEVNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 668
>gi|19568883|gb|AAL91953.1|AF483090_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 157/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V +I R E S+DE YLD+T+
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GIE--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIATCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|400288102|ref|ZP_10790134.1| DNA-directed DNA polymerase [Psychrobacter sp. PAMC 21119]
Length = 361
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 159/354 (44%), Gaps = 71/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
R I H+D+D FY VEQR P+LRG P +V + G G++A YE R +GV+ +M
Sbjct: 10 RKIIHIDMDAFYASVEQRDFPELRGKP--LVVGGDPNGRGVVAAASYEVRKFGVRSAMSC 67
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
EA++ CP + V R + D+ YR S++ SI+ R E S+DE YLD+T
Sbjct: 68 YEARKRCPDVVFV-----RPRFDV--YRAVSSDIRSIMHRLTPHVEPLSLDEAYLDVT-- 118
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
GL+ + G S + W
Sbjct: 119 --------------------------GLQVQQG--SATLMANW----------------- 133
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LR Q+L++T T SAG++ NKMLAK+AS +NKP + + + +LPI++
Sbjct: 134 -----LRAQILEQTGLTASAGVSFNKMLAKIASDINKPNGTAIITPADADAFISTLPIER 188
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+G T L + +GV+ DL + L + +G G + +IA G V++
Sbjct: 189 FHGIGKATATRL-HAMGVSNGADLRRIPAAVLVQEFG-KRGQFYHDIAHGRDERPVKSER 246
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS GS +F + S L E ++ +++ + IA+T+T+
Sbjct: 247 THKSVGSETTF------RDNLSDNDALRAQIYEQNDDAFGQMQKKQLIAYTITI 294
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 16 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 75
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 76 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 128
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 129 ------------------------------ENKMG----------------------IKS 136
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 137 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 196
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 197 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 254
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 255 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 304
>gi|440229635|ref|YP_007343428.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Serratia marcescens FGI94]
gi|440051340|gb|AGB81243.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Serratia marcescens FGI94]
Length = 354
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 148/343 (43%), Gaps = 74/343 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPSLRDIPLAIGGSAE-RRGVISTANYPARRYGVRSAMSTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YLD+TD+
Sbjct: 61 MALKLCPQLTLL-------PGRMAAYKEASLHIRQIFARYTSLIEPLSLDEAYLDVTDSP 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ C+ L
Sbjct: 114 Q--------------------------------------------CNGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS +NKP Q +P + V L LP+ K+
Sbjct: 122 IAEEIRQAIFDELQLTASAGVAPIKFLAKIASDLNKPNGQYVIPPAQVGAFLQQLPLGKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ ELG+ T D+ ++ L + +G G LW ++GI +V + L
Sbjct: 182 PGVGKVTAKRLE-ELGLHTCADVQRYDLAALLKRFG-KFGRVLWERSQGIDERQVSSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL-SERLCSDLE 352
KS G ++ A + W CE L ++L +LE
Sbjct: 240 RKSVGVERTL--------AADIHDWAE--CEALIVDKLYPELE 272
>gi|195999238|ref|XP_002109487.1| hypothetical protein TRIADDRAFT_2325 [Trichoplax adhaerens]
gi|190587611|gb|EDV27653.1| hypothetical protein TRIADDRAFT_2325, partial [Trichoplax
adhaerens]
Length = 386
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 155/354 (43%), Gaps = 35/354 (9%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY QVE K LR P + Q + ++ Y AR GV + +
Sbjct: 3 RTIIHLDIDCFYAQVEMAKNSSLRNKPVGIRQKHI-----IVTSNYPARERGVGKLIPLT 57
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+A E CP + ++ DL+ YR +V L + + R DE Y+D+T+
Sbjct: 58 KALEKCPDLIVI------NGEDLTEYREVSFKVTDYLKKFSTKVHRLGFDENYIDVTELV 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ L + +G ++ N TVK C C+ R + G
Sbjct: 112 QCRLNQFQGRLF------------VGYLYQNSN----TVKAQACDCNCRLR---MIIGSQ 152
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + T S GIAHNKML+K+ SG++KP QT + LL SL ++K+
Sbjct: 153 IAAEMRQGLWNVFSLTSSGGIAHNKMLSKIVSGLHKPNLQTAIYPEDTLDLLHSLELRKI 212
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ+ +G+TTV +L L+ + L+ +GI +V A
Sbjct: 213 AGIGSATNNKLQS-VGITTVKELSTLPLAVLKTHFPTPQACTLFQWCKGIDDSDVVAATK 271
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
PKS G SF R +AS + ++ L L RL E + + T+ H
Sbjct: 272 PKSIGVEDSF--SRCCTMIAS-KKRISDLIRHLLSRLVDGCEHPQTVKLTIIKH 322
>gi|417671081|ref|ZP_12320581.1| DNA polymerase IV [Shigella dysenteriae 155-74]
gi|332097566|gb|EGJ02545.1| DNA polymerase IV [Shigella dysenteriae 155-74]
Length = 345
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 148/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
+D+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 MDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + E+G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|210620712|ref|ZP_03292198.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
gi|210155213|gb|EEA86219.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
Length = 326
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 154/353 (43%), Gaps = 68/353 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMRG 70
R I H+D+D FY +EQR P L+G P V G G+++ YEAR YG+ +M
Sbjct: 4 RKIIHIDMDAFYASIEQRDNPSLKGKPLVVG--GSPHGRGVVSTCSYEARKYGIHSAMPC 61
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 130
EA CP V + Y+ +++ +I R Y DL +
Sbjct: 62 KEAYIRCPYAVFV-------RPRFYVYKEVSNQIRNIFHR------------YTDLVE-- 100
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
P SLDE D K + +
Sbjct: 101 --------PLSLDE-----------------------------AFLDVTENKKKIKSATI 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I ++ + +ET T SAG+++NK +AKLAS KP T + +V+ LD+LP+KK
Sbjct: 124 IAKLIKEDIKRETGLTASAGVSYNKFVAKLASDYQKPNGLTVITEDNVQEFLDTLPVKKF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+N G+ T DL S +KL++ + N G L+N ARGI V +
Sbjct: 184 FGVGKVTERVLKNN-GINTGYDLRNTSLEKLEKIFK-NRGLELYNFARGIDNRPVNPTRI 241
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G+ + + + +V L++LCEE++ER+ + ++A T+TL
Sbjct: 242 RKSIGAETTLIENKNIDDAETVM-ILDELCEEVAERMAKE----DKVAKTITL 289
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 156/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LG+ T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGIYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|254422468|ref|ZP_05036186.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
gi|196189957|gb|EDX84921.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
Length = 371
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 164/369 (44%), Gaps = 70/369 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I H+D+D FY +EQR P+LRG P AV +G + A YEAR YG+ +M
Sbjct: 20 VRKIIHIDMDAFYASIEQRDNPELRGKPVAVGGLPSQRGA-VCAASYEARKYGIHSAMPS 78
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
A C + V K YR +E+ +I E S+DE YLD++
Sbjct: 79 RSAITRCQHLIFV-------KPRFEHYRAVSAEIRAIFFDYTELVEPLSLDEAYLDVS-- 129
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
VD++ + S V
Sbjct: 130 ---------------VDKQGIGS-----------------------------------AV 139
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I ++R ++ + + T SAG++ NK LAK+AS +NKP + + K ++ L I+
Sbjct: 140 AIAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQLRIED 199
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+G T +++ LG+ T DL +++ +L +++G G++ + +AR V
Sbjct: 200 FYGVGPATATKMKS-LGIHTGADLKTWTQAELTQTFG-KVGSYYYRVARAEDNRPVNPNR 257
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
+ KS G+ +SF R L + ++ L + E+S+R L++NKR HTLTL +
Sbjct: 258 IRKSIGAERSF--FRDLSQIEDMETALANIATEVSQR----LQKNKRQGHTLTLKIK-YD 310
Query: 370 SSDSDSRKK 378
+ D+ +R +
Sbjct: 311 NYDTITRSR 319
>gi|148744927|gb|AAI42235.1| POLI protein [Bos taurus]
Length = 701
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 166/380 (43%), Gaps = 63/380 (16%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 36 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 90
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M +AKE CPQ+ LV DL+ YR +V ++ + R E+ DE+
Sbjct: 91 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTEMVEK--RLEQLQSDEL----- 137
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
A+ + H+ + + D+ L
Sbjct: 138 ---SAL---------------TVSGHVYNNQPVNPRDTLHI---------------RLLV 164
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 165 GSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESSQELIHSLNH 224
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK+M +G K L+ LG+++V DL F L++ G + + ++ G V
Sbjct: 225 IKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGEDDSPVT 283
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 284 PSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIRLIIR 336
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ S +R+ S+ CP+
Sbjct: 337 RYSSEKHYNRE---SRQCPI 353
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 151/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVA----WRGMRSVVCAASYEARVFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+
Sbjct: 58 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDV-- 108
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
T P+ G S AT
Sbjct: 109 --------TAPK---------------------GALSTATE------------------- 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L LP+
Sbjct: 121 --IAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTPLPVS 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K+ +G + L LG+ TVGDL E +L+ +G + G L+ ARGI V+A
Sbjct: 179 KVHGVGKVMQAKL-AALGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDPRPVEAN 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL +A L+E+ + + +RIA T+ L
Sbjct: 237 QQVQSISSEDTFAEDLALDALAPA-------IRLLAEKTWTATRRTERIARTVVL 284
>gi|340056782|emb|CCC51120.1| putative DNA polymerase eta [Trypanosoma vivax Y486]
Length = 513
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 171/389 (43%), Gaps = 71/389 (18%)
Query: 12 RIIAHVDLDCFYVQVE-QRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IAH+D+DCFYVQVE R R +P VVQ+ +++V Y AR +G+ R
Sbjct: 2 RCIAHIDMDCFYVQVEAMRLGIDYRTVPFIVVQWQ-----SVLSVSYPARKFGISRLTPL 56
Query: 71 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSIL-ARKGR 113
EA ++CP I + + K L YR A E+ +L + +G
Sbjct: 57 SEAIKMCPDIRISRTATYVAEDSQYRYHENPGKWTHKISLEPYREASREIFRVLGSFEGV 116
Query: 114 C-ERASIDEVYLDLTDAAEAMLAETP---------------------PESLDEVD---EE 148
C ERASIDE YLD+T+AA+ L E P+ DE+D EE
Sbjct: 117 CVERASIDEAYLDVTEAAKHELEEMAAQRRGASLRWEDVVEPSTIVIPDRQDEIDAWFEE 176
Query: 149 ALK--SHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFT 206
+ S + + G + V LL+ +V +R ++ + +
Sbjct: 177 RGRAFSEVFDVSLHPGATEEGKV--------------LLSAASRVVQRIRQKLYDDLRYE 222
Query: 207 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL- 265
CSAGIAHNK+LAK S + KP QQT + V + + ++ GG+LG ++ +
Sbjct: 223 CSAGIAHNKLLAKNISSLYKPNQQTLLFPDRVASAMWDTKYQTIRGFGGRLGETVCDLCD 282
Query: 266 GVTTVGDLLKFSEDKLQES-YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 324
G D S+ KL+ + Y +++ R +E KS + K FP P
Sbjct: 283 GEELCRDAWLLSKQKLRAALYRTFDPNYVYLRLRCYDDDEFAVGTAHKSITTTKLFP-PH 341
Query: 325 ALKTVASVQHWLNQLCEELSER---LCSD 350
A+ ++ W++ + EEL R LC +
Sbjct: 342 AISN-GEIRRWVSAVSEELCRRYTLLCDE 369
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 149/354 (42%), Gaps = 73/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVA----WRGMRSVVCAASYEARVFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + + VP D + Y+ +V I R TD
Sbjct: 58 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFQRH---------------TDL 95
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE L + + G LA
Sbjct: 96 IE-------PLSLDEA--------YLDVTAPKGE---------------------LATAT 119
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L LP+ K
Sbjct: 120 EIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTPLPVSK 179
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G + L ELG+ TVGDL E +L+ +G + G L+ ARGI V+A
Sbjct: 180 VPGVGKVMQAKL-AELGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDQRPVEADQ 237
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L L+E+ + + +RIA T+ L
Sbjct: 238 QVQSISSEDTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|19568901|gb|AAL91962.1|AF483099_1 DNA polymerase DinB [Escherichia coli]
gi|19568903|gb|AAL91963.1|AF483100_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|352089863|ref|ZP_08954168.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
gi|351679031|gb|EHA62174.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
Length = 367
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 130/299 (43%), Gaps = 68/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSM 68
+R I HVD+D FY VEQR P LRG P AV W+G + A YEAR +GV+ +M
Sbjct: 13 SRKILHVDMDAFYASVEQRDDPSLRGKPVAVA----WRGARSVVCAASYEARVFGVRSAM 68
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
A+ +CPQ L+ VP D Y+ +V I AR E S+DE YLD+T
Sbjct: 69 PAIRAERLCPQ--LIFVP-----PDFVRYKAVSRQVREIFARHTELIEPLSLDEAYLDVT 121
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+K G S E
Sbjct: 122 T------------------------------TKSGLGSATATAE---------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+R + KET T SAG+A NK LAK+AS KP + V+ L LP+
Sbjct: 136 ------AIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRPQQVEAFLTPLPV 189
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
++ +G + L LG+ TVG+L F++ +L++ +G G L +A+GI VQ
Sbjct: 190 GRLPGVGKVMEAKLAA-LGIATVGELRAFAQAELEQRFG-RWGRRLHELAQGIDEHPVQ 246
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 158/359 (44%), Gaps = 69/359 (19%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S R I HVD+D F+ VEQR +P+LRGLP +V + G + YEAR +G++ +
Sbjct: 25 SLAIRKIIHVDMDAFFAAVEQRDRPELRGLPV-IVGGDPNVRGVVATCSYEARRFGIRSA 83
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDL 126
M A+ +CPQ V + + +YR +V++IL + E S+DE +LD+
Sbjct: 84 MSAARARSLCPQAIFV-------RPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDV 136
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T A + DG + +E L D HR
Sbjct: 137 TAA-----------------------------TTDGTLAVEIAREIL---DRIHR----- 159
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
ET T SAG+++NK+LAKLAS KP +P L LP
Sbjct: 160 ---------------ETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAPLP 204
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ K+ +G L + +GV TV DL S + L +G +G W +++AR I VQ
Sbjct: 205 VGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG-KSGGWFYDVARAIDERPVQ 262
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
KS G+ ++F K +A L L +E++ ++ + L+ HT+ + A
Sbjct: 263 PSRQRKSVGTERTFS-----KNLADRSVMLTTL-QEMAAQVAARLQVLHLAGHTVHIKA 315
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASNRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P + +
Sbjct: 113 ELVRPDLPASKIAQF--------------------------------------------- 127
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+R +L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 128 ----IRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ T DL SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 149/354 (42%), Gaps = 70/354 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I HVD+D FY VEQ P L+G P AV E G + A YEAR YGV+ +M G
Sbjct: 4 VRKIIHVDMDAFYASVEQMDNPDLKGRPLAVGGNRE--RGVVAAASYEARKYGVRSAMSG 61
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDA 129
A CP + V K Y+ + + I A E S+DE +LD+T
Sbjct: 62 KMAALKCPHLIFV-------KPRFDRYKEISTRIREIFYAYTDLVEPLSLDEAFLDVT-- 112
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E+K GN S
Sbjct: 113 ----------------------------ENKVGNPS----------------------AT 122
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K
Sbjct: 123 LIAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILPQDAESFLEKLPIEK 182
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ GK+ + LG+ DL +FS L + +G +G +NI RGI EVQ
Sbjct: 183 FFGI-GKVTSEKMKSLGIHNGYDLKQFSLQFLTKRFG-KSGLHFYNIVRGIHLSEVQPNR 240
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS + +F + S WL L E+ E L +E++ T+TL
Sbjct: 241 IRKSLSAENTFS-----TDLKSEVEWLAALS-EIFEELKRRVEKSGIKGRTVTL 288
>gi|225869213|ref|YP_002745161.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
gi|225702489|emb|CAX00406.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
Length = 367
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 174/401 (43%), Gaps = 72/401 (17%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPELKGKPVVIGKNPRESGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + D + YR G ++ I R + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFRRYTDQVEPVSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + + TCSAG+++NK LAKLAS KP T V L+ LPI
Sbjct: 132 ALKIARLIQHDIWNSLQLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L +E+GV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKRTVERL-HEMGVYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS S +++ + L A ++ L++ + R+ LE NK++ + L
Sbjct: 250 NRMRKSISSERTY--AKLLYQEADIKVELSK----NARRVADLLEANKKLGRIIVLKVRY 303
Query: 368 FKSSDSDSRKKFP--SKSCPLRYGTAKIQEDTFNLFQAGLR 406
+ R P ++ L A+ D+ QAG+R
Sbjct: 304 ADFTTLTKRVSLPELTRDARLIDQVARELFDSLEEHQAGIR 344
>gi|146419760|ref|XP_001485840.1| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 172/404 (42%), Gaps = 67/404 (16%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
+IA VD++ F+ QVEQ + P VQ+ LIAV Y AR YG+ R
Sbjct: 43 VIALVDMNAFFAQVEQTRLNLSIDDPVVCVQW-----LTLIAVSYAARKYGINRMDNVKS 97
Query: 73 AKEVCPQIELVQVPV-----------------ARGKADLSSYRNAGSEVVSILARKGRC- 114
A+E CP + L V A K L YR +++ I+ K C
Sbjct: 98 AREKCPDVILAHAAVFKKGNPYWSYVDGLPNQAEHKVSLDPYRRESRKIIKII--KQHCD 155
Query: 115 --ERASIDEVYLDL-TDAAEAMLAETP----------------PESL----DEVDEEALK 151
E+AS+DE Y+DL + + +L E P PESL + V EA
Sbjct: 156 VVEKASVDECYMDLGREVHKRLLLEFPQLRQLGLKLPDIPPQLPESLYWQGETVRTEAED 215
Query: 152 SHILGLE----SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 207
+ + E S+ S T+ +W C + G ++ ++R + E +T
Sbjct: 216 AELQLRENVSSSQKPPASPPTISDWDDIC--------VLIGAQVLYKIRKLIYDELSYTT 267
Query: 208 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-- 265
S GIA NK LAKLA+G NKP QT + + + L + + +GGK G ++
Sbjct: 268 SGGIARNKFLAKLAAGFNKPDNQTIIRLALIPNFLTNFQFNDVSGMGGKTGDTVLARFDT 327
Query: 266 --GVTTVGDLLK-FSEDKLQESYGFNT--GTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
GV + L + ++ +Q+ Y + +++I RG + ++ R KS S K+F
Sbjct: 328 PPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDVKSMMSRKNF 387
Query: 321 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
R +KT+ + WL +L R ++N + L H
Sbjct: 388 IPQRPVKTLFDIFSWLKVYAGDLHNRFIDLDDENMNLLMLLVSH 431
>gi|366090384|ref|ZP_09456750.1| DNA polymerase IV [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 154/355 (43%), Gaps = 70/355 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSMR 69
R I H+D+D FY +E R PKL LP + + GG G++A Y AR+YG+ +M
Sbjct: 4 RKIIHIDMDAFYASIEMRDDPKLASLPLIIARDPRKTGGHGVVATANYVARSYGIHSAMS 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 128
+A ++C Q D YR +++ I E + DE YLD+T
Sbjct: 64 SQKALKLCSQAYF-------KDPDFKKYRAVSNQIHEIFHEYTDYIEPIAFDEAYLDIT- 115
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ H D L
Sbjct: 116 -----------------------------------------------SNKKHLDSALQTA 128
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+I E + + TCSAGI++NK LAKLAS KP T V V+ L L I+
Sbjct: 129 RMIQQE----IFTKVHLTCSAGISYNKFLAKLASDYRKPVGITLVRQDEVQDFLFPLAIE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K + +G K + ++LGV T DL + S +L +G G L+ RGI V+ +
Sbjct: 185 KFRGVGKKTVPKM-HQLGVFTGKDLYQLSSGELISHFG-KMGYILYQRVRGIDERPVEWQ 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G+ ++F P L TVASV+++L ++ ++RL +L+Q ++ TL +
Sbjct: 243 RIRKSLGNERTFDRP--LTTVASVENFL----QKSAKRLADELDQQQKHGKTLVI 291
>gi|95931101|ref|ZP_01313827.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
gi|95132846|gb|EAT14519.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
Length = 380
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 152/358 (42%), Gaps = 79/358 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAV-GYEARNYGVK 65
R I H+D+D FY VEQR P+LRG P V GG G++A YEAR +G+
Sbjct: 5 RKIIHIDMDAFYASVEQRDHPELRGKPVIV-------GGPPDSRGVVATCSYEARKFGIH 57
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M A +CPQ V + + YR S++ +I E Y D
Sbjct: 58 SAMASSRAYRLCPQALFV-------RPRMEVYRQVSSQIRAIF------------EHYTD 98
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
L + P SLDE L L D + AT W+ R
Sbjct: 99 LIE----------PLSLDEA--------FLDLTMSDRQPNSAT---WIAR---------- 127
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
E+ ++ +ETE T SAG+++NK LAK+AS +KPA T + + L
Sbjct: 128 --------EILERIHRETELTASAGVSYNKFLAKVASDCHKPAGLTVITPDQASDFIAQL 179
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
PI++ + GK+ LG+T DLLK+ E +L +G G + + IARGI V
Sbjct: 180 PIRRFFGV-GKVTEKKMLRLGITCGADLLKYPETELIRLFG-KQGRFFYRIARGIDERPV 237
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
A H KS L + + + L+E++ L + A+T+TL
Sbjct: 238 VA------HRQRKSIGNETTLSEDIRNRDQMLTILSALAEKIEGRLAHYQTSAYTITL 289
>gi|19568895|gb|AAL91959.1|AF483096_1 DNA polymerase DinB [Escherichia coli]
gi|19568897|gb|AAL91960.1|AF483097_1 DNA polymerase DinB [Escherichia coli]
gi|19568899|gb|AAL91961.1|AF483098_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 155/352 (44%), Gaps = 68/352 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P LRG P AV + K G + A YEAR +GV+ +M
Sbjct: 7 RKIIHVDMDAFYASVEQRDNPDLRGKPVAV--GHGAKRGVVAAASYEARAFGVRSAMAST 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A CP +L+ VP EV ++R+ I E++ + T E
Sbjct: 65 TALRQCP--DLIFVP-------------PRFEVYRAISRQ-------IREIFAEYTPLFE 102
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D + L
Sbjct: 103 -------PLSLDE-----------------------------AYLDVTENLRGLPTAADT 126
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
TE+R ++ ET T SAG+++NK LAKLAS M+KP Q +P +++L +KK
Sbjct: 127 ATEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIPPQRGAEFIEALAVKKFH 186
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L N LG+ T DL S + LQ+ +G +G W + IARG V+
Sbjct: 187 GVGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHFG-KSGGWYYAIARGEDDRPVEPNRPR 244
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS GS +FP R L A ++ + ++ +++ C E+N+ T+T+
Sbjct: 245 KSSGSETTFPEDRFLP--AEIEEGVLEMADDVWV-WC---EKNRSFGATVTV 290
>gi|195390592|ref|XP_002053952.1| GJ24165 [Drosophila virilis]
gi|194152038|gb|EDW67472.1| GJ24165 [Drosophila virilis]
Length = 749
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 170/395 (43%), Gaps = 48/395 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR P AV Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEELRDPTLRNRPLAVQQKN-----CVVTCNYVARAKGVTKLMGVT 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ +C + LV DL+ YR ++ +L E+ DE ++D+T
Sbjct: 70 EAQRLCSDLVLV------NGEDLAPYRLMSQKIFDLLLNYTPDVEKLGFDENFMDVTALV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ A E K I + DG A C C R LA G
Sbjct: 124 DLRQAHAA--------EAQRKPPIGHIYPADGTALTA------CSCGCAQR---LAIGTR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +
Sbjct: 167 IAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSTYAEQFMRELNDLHS 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K T L E GV+TV L + + +++ +GF T T L ++A G G V+A
Sbjct: 227 VTGIGQKTQTLLL-EAGVSTVEQLQQCDMEFMRKKFGFETATKLRDLALGRDGSSVRA-- 283
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
G K+ A KT+ SV + L +RL + ++ RI + + F
Sbjct: 284 ----TGKPKTISVEDACKTI-SVHTDVTDKFRMLLKRLMEQVAEDGRIPIAIKVVLRKFD 338
Query: 370 SSDSDSRKK----------FPSKSCPLRYGTAKIQ 394
S S ++ F + CP G K+Q
Sbjct: 339 SQKKTSHRETKQANILPSLFKTSVCPGETGVCKVQ 373
>gi|389797332|ref|ZP_10200375.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
gi|388447706|gb|EIM03706.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
Length = 366
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 130/299 (43%), Gaps = 68/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSM 68
+R I HVD+D FY VEQR P LRG P AV W+G + A YEAR +GV+ +M
Sbjct: 13 SRKILHVDMDAFYASVEQRDDPSLRGKPVAVA----WRGARSVVCAASYEARVFGVRSAM 68
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
A+ +CPQ L+ VP D Y+ +V I AR E S+DE YLD+T
Sbjct: 69 PAIRAERLCPQ--LIFVP-----PDFVRYKAVSRQVREIFARHTELIEPLSLDEAYLDVT 121
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+K G S E
Sbjct: 122 T------------------------------TKSGLGSATATAE---------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+R + KET T SAG+A NK LAK+AS KP + V+ L LP+
Sbjct: 136 ------AIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRPQQVEAFLTPLPV 189
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
++ +G + L LG+ TVG+L F++ +L++ +G G L +A+GI VQ
Sbjct: 190 GRLPGVGKVMEAKLAA-LGIATVGELRAFAQAELEQRFG-RWGRRLHELAQGIDEHPVQ 246
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASNRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ T DL SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|401421627|ref|XP_003875302.1| putative DNA polymerase eta [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491539|emb|CBZ26810.1| putative DNA polymerase eta [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 772
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 178/441 (40%), Gaps = 119/441 (26%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R IAH+D+DCFY QVE R R P V Q+ G LIAV Y AR GVKR
Sbjct: 17 RCIAHIDMDCFYAQVEAVRLGVDCRVTPLVVAQW-----GSLIAVNYPARARGVKRFNNV 71
Query: 71 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARKG-- 112
EA+ +CP + + P R K L YR+A +V SILA
Sbjct: 72 AEAQALCPGLVVALSPSYRMGESVSQYHPHPVQDSYKISLEPYRHASRQVFSILAATPGI 131
Query: 113 RCERASIDEVYLDLTDAAEAMLAET----PPESLDEVDEEALKSHILGLESKDGNDSKAT 168
+ E+ SIDE Y+D+T+AA LAE SLD + + ++ ++ D +A
Sbjct: 132 QVEKGSIDEAYIDVTEAARRELAEVRAAAAGASLDPL------ADVMEPSTRLIEDRRAE 185
Query: 169 VKEW------------------LCR--CDAD-----------------HRDKLLACGVLI 191
++ W L R C A+ R LL +
Sbjct: 186 MEAWFGARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYAERCLLLCAASRV 245
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT-TVPFSSVKGLLDSLPIKKM 250
V LR ++ E + CSAGIAHN++LAK S +KP QQT +P S L + LP+ +
Sbjct: 246 VHRLRQRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALFE-LPLSGV 304
Query: 251 KQLGGKLGTSLQNELGVTT---------VGDLLKF---------------SEDKLQESYG 286
+ GGKLG ++ G T + L K +E ++ YG
Sbjct: 305 RGFGGKLGAAVSAVCGGVTECREAWLVPLAQLCKLDGACDVGDGEDAEDDTEGRVGRLYG 364
Query: 287 --------------------FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 326
T +++ RG+ G+ V LP+ + K F A
Sbjct: 365 RKRGRAASPSMERNFQGLAAHTTSQYVFYRLRGLGGDTVADPALPRGMRASKIFHP--AC 422
Query: 327 KTVASVQHWLNQLCEELSERL 347
+ ++ Q W+ L EL R
Sbjct: 423 SSWSAAQLWMAPLAGELWHRF 443
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 128/298 (42%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W+G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVA----WEGARSVICAASYEARQFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 60 VATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D H K +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTHNFKNIPYAS 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 182 IPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|19568891|gb|AAL91957.1|AF483094_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 146/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQR P RG P V + + +G + A YEAR YG+ +M
Sbjct: 4 RKIIHIDMDAFFASVEQRDNPAWRGKPLIVARPPQERGV-VAAASYEARRYGLHSAMSSH 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDAA 130
A ++CP + LV +YR ++ ++ LA E S+DE YLD
Sbjct: 63 RALQLCPHVILV-------PPRFETYRAVSLQIRALMLAITDLVEPLSLDEAYLD----- 110
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
++++P E G+ ++
Sbjct: 111 ---VSDSPHER--------------------GSATR------------------------ 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I LR ++ T T SAG+++NKMLAK+AS +NKP +P + SLPI++
Sbjct: 124 IAERLRAEIRAATGLTASAGVSYNKMLAKIASDLNKPDGLAVIPPAEGPAFAASLPIERF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + + LG+ T DLL+FS + L++++G G + +++ARGI V+
Sbjct: 184 HGI-GKATAAHMHALGIKTGADLLRFSAESLRQAFG-KHGDFYYHMARGIDLRPVEPTRE 241
Query: 311 PKSHGSGKSF 320
KS GS +F
Sbjct: 242 RKSIGSETTF 251
>gi|261332129|emb|CBH15122.1| DNA polymerase eta, putative [Trypanosoma brucei gambiense DAL972]
Length = 525
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 162/375 (43%), Gaps = 54/375 (14%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I H+D+DCFY QVE R R P + Q+ G LIAV Y AR +G+ R
Sbjct: 2 RCIVHIDMDCFYAQVEAVRLGVDCRTEPYVLSQW-----GNLIAVNYPARKFGIGRFDTV 56
Query: 71 DEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSIL-ARKG- 112
+A E CP +++ V A G K L YR A ++ IL + G
Sbjct: 57 TDALEKCPHVKISHVATYAAGEVEYRYHENPSKQTHKVALEPYREASRKIFRILDSFDGV 116
Query: 113 RCERASIDEVYLDLTDAAE------AMLAETPPESLDEVDEEAL------KSHILGLESK 160
E+ S+DE +LD+T AA +L+ L++V + ++ I +
Sbjct: 117 EVEKGSVDEAFLDVTKAAHMKQGEMGLLSSQGELRLEDVADPTTIVIPSRQAEIAAWLKE 176
Query: 161 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 220
G + L LLA +V +R ++ E + CSAGIAHNK+LAK
Sbjct: 177 HGREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAKS 236
Query: 221 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG---------VTTVG 271
S +KP QQT + V ++ LP K ++ GGK G ++ G + ++
Sbjct: 237 ISARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKFGEVVRLACGGKETCREAWLHSLC 296
Query: 272 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 331
+ KF E Y + RG +++ R + KS + K+F P + T
Sbjct: 297 AMSKFFESVGDAEYAYRR-------LRGYDEGKIRERSISKSLMASKAFSPPSS--TANG 347
Query: 332 VQHWLNQLCEELSER 346
VQ W+ L ELS R
Sbjct: 348 VQKWVTVLSGELSAR 362
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 151/352 (42%), Gaps = 68/352 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQR P LRG P AV + YEAR YGV+ +M G
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPDLRGRPLAVGGGGPRGVVA--SASYEARKYGVRSAMSGG 59
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A+ +CP+I V R + D+ YR+ + I +++LD TD E
Sbjct: 60 MARRLCPEIVFV-----RSRFDV--YRSVSYQ---------------IRDIFLDYTDLVE 97
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K + LI
Sbjct: 98 -------PLSLDE-----------------------------AYLDVTENKKNMTSATLI 121
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ ET T SAG++ NK LAK+AS +NKP + L+ L ++K
Sbjct: 122 AQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITPEEAIAFLEQLAVEKFH 181
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + N +G+ T GDL + SE L +G G + + I R EV +
Sbjct: 182 GVGKVTARKMHN-MGIYTGGDLKQRSEADLVRFFG-KAGRYYYRIVRAEDNREVNPHRIR 239
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G+ ++F + V+ + N+L +L+E + +++ + T+TL
Sbjct: 240 KSIGAERTFN-----EDVSDPEIMKNKLT-DLAEGVHRYMDKTQNFGRTVTL 285
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 129/298 (43%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVA----WDGTRSVICAASYEARKFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 60 VATAKRLCPQA--VFVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D K +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTQNFKNIPYAS 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPPKIMAFLESLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 182 IPGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 147/336 (43%), Gaps = 62/336 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P+ RG AV E +GG + YEAR +GV+ +M
Sbjct: 10 RKIIHIDMDAFYASVEQRDNPEYRGKAIAVGGSPEGRGGVVATASYEARKFGVRSAMPSK 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP++ + R + D+ Y+ A ++ I +R TD E
Sbjct: 70 RALQLCPELIFI-----RPRFDV--YKEASRKIREIFSRH---------------TDIIE 107
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D + + + I
Sbjct: 108 -------PLSLDE-----------------------------AFLDVTEDKQQIGSAIEI 131
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
++ + E + T SAG++ NK +AK+AS +NKP T + SS++ ++ LP++K
Sbjct: 132 AKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPSSIESFMEKLPVEKFF 191
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ +G+ T DL + SE+ L+ +G G + + I RGI EVQ
Sbjct: 192 GV-GKVTADKMKRMGLHTGADLKRLSENDLKTHFG-KVGAFYYRIVRGIDEREVQPHRET 249
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G+ +F P L + L ++ + ERL
Sbjct: 250 KSLGAEDTF--PYDLTRTEEMNAELEKIAVTVYERL 283
>gi|354806700|ref|ZP_09040181.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
gi|354514884|gb|EHE86850.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
Length = 376
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 167/377 (44%), Gaps = 70/377 (18%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGV 64
++ +R I H+D+D FY +E+R+QP LR P + + GG G++ Y AR YGV
Sbjct: 10 ENDTSRKIIHIDMDAFYASIEEREQPDLRQKPLVIARNPSDTGGKGVVTTANYVARQYGV 69
Query: 65 KRSMRGDEAKEVCPQIELV-QVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 122
+M +A E+ P + V + P + Y++ ++ +I + E + DE
Sbjct: 70 HSAMSAQKAAELIPNHQAVFKAP------NFPLYQSVSEQIHTIFHTVTDKIEPIAFDEA 123
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T E+K G
Sbjct: 124 YLDVT------------------------------ENKLG-------------------- 133
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
LA + +V ++ ++LKET+ SAGI++NK LAK+AS KPA +T V L
Sbjct: 134 --LAHTIDVVAYIQKEILKETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFL 191
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LPI+K + +G K +Q ELG+ T DLL+ SE L +++G G L+ RGI
Sbjct: 192 SRLPIEKFRGVGKKTAPRMQ-ELGILTGADLLEQSEMMLMQNFG-KLGYGLYRHVRGIDN 249
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V + KS G+ ++ P L + VQ L +L EL R L +N++ T+
Sbjct: 250 RPVAYQRERKSIGNENTYGQP--LISEEQVQVELKKLAIELERR----LRKNQKHGLTVV 303
Query: 363 LHASAFKSSDSDSRKKF 379
L + RK F
Sbjct: 304 LKVRNRQFETITKRKTF 320
>gi|389809863|ref|ZP_10205529.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
gi|388441393|gb|EIL97669.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
Length = 363
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 131/302 (43%), Gaps = 68/302 (22%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVK 65
S+ R I HVD+D FY VEQR P LRG P AV W+G + A YEAR +GV+
Sbjct: 6 SASPRKILHVDMDAFYASVEQRDDPALRGKPVAVA----WRGARSVVCAASYEARVFGVR 61
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYL 124
+M A+ +CPQ L+ VP D Y+ ++ I AR E S+DE YL
Sbjct: 62 SAMPAIRAERLCPQ--LIFVP-----PDFVRYKAVSRQIREIFARHTELIEPLSLDEAYL 114
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T A LG + +A ++E
Sbjct: 115 DVTTTKSA----------------------LGSATATAEAIRAAIRE------------- 139
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
ET T SAG+A NK LAK+AS KP V V+ L
Sbjct: 140 -----------------ETRLTASAGVAPNKFLAKIASDFRKPDGLFVVRPQQVETFLTP 182
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP+ ++ +G + L LG+ TVG+L F++ +L++ +G G L ++RG+
Sbjct: 183 LPVGRLPGVGKVMEAKLAA-LGIATVGELRAFAQAELEQRFG-RWGRRLHELSRGVDEHP 240
Query: 305 VQ 306
VQ
Sbjct: 241 VQ 242
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 163/357 (45%), Gaps = 78/357 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY V Q P+L+G P AV GGG + A YEAR +GVK
Sbjct: 8 RKIIHVDMDAFYASVAQMDNPELKGKPIAV-------GGGGKRGVISAASYEARKFGVKS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G A+++CP++ V + D Y SE+ I +++ D
Sbjct: 61 AMSGRLAEKLCPELIFV-------RTDFERY----SEI-----------SKRIRKIFYDY 98
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE +++ E+K G L
Sbjct: 99 TDLVE-------PLSLDE-------AYLDVTENKIG----------------------LP 122
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI ++R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+ L
Sbjct: 123 SATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPEDVLQFLEDLD 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ + G+ T DL S D L++++G +G ++I RGI +V+
Sbjct: 183 IRKFYGV-GKVTAEKMYQKGIFTGKDLKSKSADYLEKNFG-KSGRSYYHIVRGIHNSKVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS + ++F L + + L Q+ EE+S+R L+++K T+TL
Sbjct: 241 PNRIRKSLAAERTF--RENLSSEIFMLEKLRQIAEEVSKR----LDKSKVAGKTITL 291
>gi|379705975|ref|YP_005204434.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374682674|gb|AEZ62963.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 363
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 159/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ IL R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYREIGMQIREILRRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +K+ +K
Sbjct: 124 ------------------------------ENKRG--TKSAIK----------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + +E TCSAG+++NK LAKLAS +KP T V + L LPI
Sbjct: 135 ---IAKMIQYDIWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFLKKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++GV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVRP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ L +N ++ + L
Sbjct: 250 NRIRKSIGSERTY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVVL 299
>gi|424877038|ref|ZP_18300697.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164641|gb|EJC64694.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 364
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 136/310 (43%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRGLP AV + G + A YEAR +GV +M
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGLPVAV--GSPATRGVVAAASYEARTFGVHSAMPSV 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A+ CP++ V K Y+ ++ +I A E S+DE YLD+T+
Sbjct: 69 TAQRKCPELIFV-------KPRFDVYKAVSLQIRTIFAEYTPMIEPLSLDEAYLDVTENL 121
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ M E+ E
Sbjct: 122 KGM----------EIATE------------------------------------------ 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ T T SAGI++NK LAK+AS NKP Q + + ++ LP+KK
Sbjct: 130 IAAEIRARIKSTTGLTASAGISYNKFLAKMASDQNKPNGQFVITPKNGPAFVERLPVKKF 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + LG+ T DL + + D L E +G +G + + IARGI V+ +
Sbjct: 190 HGVGPATAEKM-HRLGIDTGADLKEKTLDFLVEHFG-KSGPYFYGIARGIDNRLVKPDRV 247
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|306834307|ref|ZP_07467424.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|336065017|ref|YP_004559876.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
gi|304423480|gb|EFM26629.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|334283217|dbj|BAK30790.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
Length = 381
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 158/361 (43%), Gaps = 76/361 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 27 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 86
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 87 SSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEAYLDVT 139
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 140 ENK------------------------LGIKS---------------------------- 147
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + +E TCSAG+++NK LAKLAS KP T + + L+ LPI
Sbjct: 148 ALKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPI 207
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS V++
Sbjct: 208 EKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKS 265
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLH 364
+ KS GS +++ + + + + E+S +R+ L++N ++ T+ L
Sbjct: 266 NRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLK 316
Query: 365 A 365
Sbjct: 317 V 317
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 157/355 (44%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARVFGVRSAMP 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V +I R E S+DE YLD+++
Sbjct: 61 AVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSE 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P+S G+E LA
Sbjct: 114 ----------PKS--------------GIE--------------------------LATD 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+
Sbjct: 124 --IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVN 181
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 182 RVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPD 239
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 240 QQVQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|171779234|ref|ZP_02920205.1| hypothetical protein STRINF_01082 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282290|gb|EDT47717.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 364
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 159/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 12 SRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ IL R E SIDE YLD+T
Sbjct: 72 SSKEAYERCPQAIFIS-------GNYQKYREIGMQIREILRRYTDLVEPMSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +K+ +K
Sbjct: 125 ------------------------------ENKRG--TKSAIK----------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + +E TCSAG+++NK LAKLAS +KP T V + L LPI
Sbjct: 136 ---IAKMIQYDIWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFLKKLPI 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++GV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 193 EKFHGVGKKSVEKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVRP 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ L +N ++ + L
Sbjct: 251 NRIRKSIGSERTY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVVL 300
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 128/298 (42%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W+G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVA----WEGARSVICAASYEARQFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 60 VATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D H K +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTHNFKNIPYAS 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ TE+R + E T SAGIA NK LAK+AS KP Q +P + L++LP+ K
Sbjct: 122 EVATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKIMAFLETLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 182 IPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|419298502|ref|ZP_13840520.1| DNA polymerase IV [Escherichia coli DEC11C]
gi|378157078|gb|EHX18120.1| DNA polymerase IV [Escherichia coli DEC11C]
Length = 357
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 150/350 (42%), Gaps = 79/350 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRG------LPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVR 60
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YL
Sbjct: 61 SAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYL 113
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+TD+ C A
Sbjct: 114 DVTDSVH------------------------------------------CHGSA------ 125
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +
Sbjct: 126 ----TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 181
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +
Sbjct: 182 LPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERD 239
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 240 VNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 279
>gi|448089441|ref|XP_004196808.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|448093718|ref|XP_004197839.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359378230|emb|CCE84489.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359379261|emb|CCE83458.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
Length = 693
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 159/375 (42%), Gaps = 45/375 (12%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
+IAH+DL+ F+ QVEQ + P Q+ LIAV Y AR YG+ R
Sbjct: 43 VIAHIDLNAFFAQVEQIRLNLSSNDPIVCAQW-----SSLIAVSYAARAYGINRMDTIKV 97
Query: 73 AKEVCPQIELVQVPVARG-----------------KADLSSYRNAGSEVVSILARKGR-C 114
A+ CP + + V + K L YR ++ ++ +
Sbjct: 98 ARAKCPDLIIAHAAVFQKGNSHWAYVPGLPDPDIHKVSLDPYRRESRKIFKVIKLFCKNV 157
Query: 115 ERASIDEVYLDLTDAAEAMLAETPPESLD---EVDEEAL------KSHIL---GLESKDG 162
E+AS+DE Y+DL L + PE D + D E L S ++ G +
Sbjct: 158 EKASVDEGYIDLGSLIYERLRKIFPEIADCEHQDDNELLPPLPDKSSSVIRAYGEIYYNK 217
Query: 163 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 222
K K++ R D D + G I+ E+R ++ K FT S G+A NK++AKLA
Sbjct: 218 ETLKLKKKDFPIRL-HDWDDACILLGSQILFEIRWEIFKVLGFTTSGGVARNKVMAKLAG 276
Query: 223 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT---------VGDL 273
G KP QT + S++ L++ + M+ +GGK G + LGV T + D
Sbjct: 277 GFLKPDNQTIILNSNINSFLENFELDDMRSMGGKAGQLILKTLGVPTDTKSNTIAYIRDN 336
Query: 274 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
E K + S T ++++ RG EE+ R KS S K+F + T+
Sbjct: 337 FTLGELKDKLSNDSVTSEKIYDLVRGNYSEELTFRTDVKSMMSRKNFTSRTYVTTLKDAI 396
Query: 334 HWLNQLCEELSERLC 348
WL +L R+
Sbjct: 397 DWLKVFSGDLVNRIV 411
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 156/354 (44%), Gaps = 71/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
R I H+D+D F+ VEQR P+L+G P V + G G++A YE R +GV +M
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELQGKPLVVG--GDPNGRGVVAAASYEIRKFGVHSAMSC 59
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
A+++CPQ V K YR ++ +I+ + E S+DE YLD+T
Sbjct: 60 YRARQLCPQAIFV-------KPRFEVYREVSEQIRAIMHQYTLLVEPLSLDEAYLDVT-- 110
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
++P E
Sbjct: 111 ------DSPYEK--------------------------------------------NSAT 120
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R Q+L++T+ T SAG+++NKMLAK+AS +NKP + + +LP+KK
Sbjct: 121 LIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPEQGLDFIANLPVKK 180
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ GK + +++G+ T DL D L++ +G G + IA GI EV+A
Sbjct: 181 FHGI-GKATVKMLHDMGIFTGLDLRNTPADVLKQHFG-KRGDFFHQIAHGIDNREVKAER 238
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS GS +F + + + L E S+ DL++ +R A T+T+
Sbjct: 239 NHKSVGSETTF-----VHNTMDDKVIVAALYRENSQAF-KDLQKKQRKARTITI 286
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 157/363 (43%), Gaps = 80/363 (22%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARN 61
D +R I HVD+D FY VEQ P L+G AV GG G+I A YEAR
Sbjct: 2 DFDISRKIIHVDMDAFYASVEQLDDPSLKGKAIAV-------GGSSDRGVISAASYEARK 54
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASID 120
+GV+ +M A+++CP++ V K Y+ +V +I E S+D
Sbjct: 55 FGVRSAMSSTVARKLCPELIFV-------KHHFERYKEVSQQVRAIFFEYTDLVEPLSLD 107
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
E YLD+T E+K GN S +
Sbjct: 108 EAYLDVT------------------------------ENKKGNPSAS------------- 124
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
LI E+R ++L++T T SAGI+ NK +AK+AS NKP Q TV V
Sbjct: 125 ---------LIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIPGEVLD 175
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L++L IKK + GK+ LG+ T DL +E L +++G +G + I RGI
Sbjct: 176 FLENLDIKKFYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTQNFG-KSGAHYFRIVRGI 233
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V K H + KS R + + ++ +ELS+ L L ++K T
Sbjct: 234 HNSPV------KPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAGKT 287
Query: 361 LTL 363
+TL
Sbjct: 288 ITL 290
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 132/297 (44%), Gaps = 66/297 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W G + A YEAR +G+ +M
Sbjct: 5 RKIVHVDMDAFYASVEQRDNPDLRGKPVVVA----WTGPRSVVCAASYEARRFGIHSAMS 60
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + VP D + YR+ +V I AR TD
Sbjct: 61 AARAERLCPHA--IYVP-----PDFNRYRDVSRQVRQIFARH---------------TDL 98
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE + + + LGL S
Sbjct: 99 IE-------PLSLDEAYLD-VTINKLGLPS----------------------------AT 122
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R Q+ +ET T SAG+A NK LAK+AS NKP V + V L+ LP++K
Sbjct: 123 EVAQVIRHQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAKVLAFLEPLPVRK 182
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ + GK+ + +LG+ TVGDL S +L+ +G G L+ +ARGI EVQ
Sbjct: 183 VPGV-GKVTQARLEQLGIHTVGDLATHSAQELEHYFG-RYGRRLYELARGIDEREVQ 237
>gi|332522339|ref|ZP_08398591.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
gi|332313603|gb|EGJ26588.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
Length = 364
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 137/313 (43%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE R P L+G P + + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFAAVEIRDNPDLKGKPVVIAKDPRETGGRGVVSTCNYEARTFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYDKYREVGLKIRQIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G L
Sbjct: 124 ------------------------------ENKLG----------------------LTS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAGI++NK LAKLAS KP T + + L+ LPI
Sbjct: 132 AVKIAKLIQYDIWKELHLTCSAGISYNKFLAKLASDFEKPHGLTLILPDQAQPFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV DLL SE L + +G G L+ ARGIS V+A
Sbjct: 192 EKFHGVGIKSVEKL-HEMGVYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISYSPVKA 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRIRKSIGSERTY 262
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 163/357 (45%), Gaps = 78/357 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARNYGVKR 66
R I H+D+D FY VEQ P+LRG AV GG G++ A YEAR +GV+
Sbjct: 5 RKIIHIDMDAFYASVEQLDNPELRGKAVAV-------GGSSQRGVVSAASYEARKFGVRS 57
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M AK CP + V+ R K ++S I E++ +
Sbjct: 58 AMSSVIAKRNCPDLIFVKPRFERYK-EIS---------------------GQIREIFFEY 95
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE +++ E+K GN S
Sbjct: 96 TDLVE-------PLSLDE-------AYLDVTENKKGNPS--------------------- 120
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI ++R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L
Sbjct: 121 -ATLIAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQPEEVIAFLEELD 179
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ LG+ T DL SE+ L E +G +GT +N+ RGI EV+
Sbjct: 180 IRKFYGV-GKVTAEKMYRLGIFTGKDLKLKSEEYLTEHFG-KSGTHFYNVVRGIHLSEVK 237
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G+ ++F + ++S L +L E ++E + L ++K T+TL
Sbjct: 238 PHRIRKSLGAERTFN-----ENISSEIFMLERL-ENIAEEIERRLTKSKVAGKTITL 288
>gi|407421058|gb|EKF38800.1| DNA polymerase eta, putative [Trypanosoma cruzi marinkellei]
Length = 521
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 165/382 (43%), Gaps = 53/382 (13%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I H+D+DCFY QVE R R P + Q+ G LIAV Y AR G+ R
Sbjct: 20 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 74
Query: 71 DEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSILA--RKG 112
++A+E CP +++ V A G K L YR A ++ +IL
Sbjct: 75 EKAREKCPHVKISHVATYAVGDTEYKYHENSRKGTHKVSLEPYREASRKIFNILCSFEGV 134
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN---DSKATV 169
E+ S+DE YLD+T AA+ LA + SH+ + + N D +A +
Sbjct: 135 EVEKGSVDEAYLDVTLAAQRELASI------RLSSAQCSSHLEDVMHHETNVIPDRQADI 188
Query: 170 KEWLCR----------------CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 213
W +H+ LL +V +LR ++ +E + CSAGIAH
Sbjct: 189 DAWFFEKGKGFNEVFDTALHPPVTVEHQ-LLLGAASRVVWKLREKIYQELRYDCSAGIAH 247
Query: 214 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-GVTTVGD 272
NK+LAK S +KP QQT + V + P + ++ GGK G + G D
Sbjct: 248 NKILAKSISSRHKPNQQTLLLPDRVASAVWDTPYQSIRGFGGKFGECVCRACGGAELFRD 307
Query: 273 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 332
+KLQ G + G + + R E+++ + + K+ + KSF P + + +
Sbjct: 308 AWLVPLEKLQSVLGDDDGAYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPTS--SSEGL 365
Query: 333 QHWLNQLCEELSERLCSDLEQN 354
+ W+ L EL R E N
Sbjct: 366 RKWITVLSSELCARYKEFCETN 387
>gi|341613645|ref|ZP_08700514.1| DNA polymerase IV [Citromicrobium sp. JLT1363]
Length = 380
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 161/370 (43%), Gaps = 80/370 (21%)
Query: 4 ARPD-----SSG---ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV 55
ARPD S+G R I HVD+D F+ VEQR P+LRG P AV G G++A
Sbjct: 6 ARPDDGAEESAGEQRQRKIIHVDMDAFFASVEQRDNPELRGKPVAV---GGSSGRGVVAA 62
Query: 56 G-YEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GR 113
YEAR +GVK +M AK +CP + V K+ +YR A ++ +I
Sbjct: 63 ASYEARKFGVKSAMPSVTAKRLCPDLIFV-------KSRFDAYREASEQIRTIFRHHTDL 115
Query: 114 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWL 173
E S+DE YLD+T E+K G
Sbjct: 116 VEPLSLDEAYLDVT------------------------------ENKLG----------- 134
Query: 174 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 233
+A + +R ++ +T+ T SAG+++NK LAKLAS NKP +
Sbjct: 135 -----------IAAATQVAQMIRQEIRAKTQLTASAGVSYNKFLAKLASDQNKPDGMCVI 183
Query: 234 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 293
+ +LPI++ +G + G LG+ T DL L + +G + G +L
Sbjct: 184 RPGEGAAFVQTLPIRRFHGVGPR-GEEKMARLGIATGADLAAKDRAWLAQHFG-SFGEYL 241
Query: 294 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+ ARGI V+ + KS G ++F R ++ L+++ E + ER +E+
Sbjct: 242 YRAARGIDERPVRVNRIRKSIGGERTFSADR--HEAEELRTTLDEIVEIVWER----IER 295
Query: 354 NKRIAHTLTL 363
+ T+TL
Sbjct: 296 AQARGRTVTL 305
>gi|449282938|gb|EMC89663.1| DNA polymerase iota, partial [Columba livia]
Length = 594
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 171/381 (44%), Gaps = 41/381 (10%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ R+I H+DLDCFY QVE + P+LR P V Q N ++ YEAR GV++
Sbjct: 1 SAAHRVIVHMDLDCFYAQVEMIRNPELRDKPLGVQQKN-----LVVTSNYEARKLGVQKL 55
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 126
M +AKE CPQ+ LV DL++YR +V +L ER +DE ++D+
Sbjct: 56 MFVKDAKEKCPQLVLV------NGEDLTAYREMSYKVTELLGEFCPLVERLGLDENFVDV 109
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ E L + + V + H+ ++ + +D+ R L
Sbjct: 110 TEMVEERLKQLQQSACSRV---CVSGHVYNNQAINLDDT---------------RHVRLI 151
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
G I ELR V T AG+A NK+L+KL SG KP QQT + S L+ SL
Sbjct: 152 LGSQIAEELREAVYTRLGLTGCAGVAANKLLSKLVSGTFKPNQQTVLLPESRPDLIRSLD 211
Query: 247 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I+K+ +G K L+ LG+ V D+ F L+ G + ++ G V
Sbjct: 212 RIQKVPGIGAKTARRLE-ALGIRNVCDVRAFPSAALEAELGAALAQRIQKLSCGEDESPV 270
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
P+S SF + + V+ + +L L +R+ D Q HT+ L
Sbjct: 271 TPWGPPQSFSDEDSF---KKCSSEVEVKEKIEELLHNLLDRIHKDGRQ----PHTVRLTI 323
Query: 366 SAFKSSDSDSRKKFPSKSCPL 386
F S+D ++ S+ CP+
Sbjct: 324 RQFSSTDKWFNRE--SRQCPI 342
>gi|170748058|ref|YP_001754318.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
gi|170654580|gb|ACB23635.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
Length = 360
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 138/310 (44%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P LRG P AV E G + A YEAR +GV+ +M
Sbjct: 8 RKIIHIDMDAFYASVEQRDDPSLRGKPLAVGGSRER--GVVAAASYEARRFGVRSAMPSA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAA 130
A+ +CP + V K YR E+ ++ AR E ++DE YLD+T+
Sbjct: 66 TARRLCPDLLFV-------KPRFEVYRAISEEIRAVFARHTAVIEPVALDEAYLDVTE-- 116
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
++LGL +
Sbjct: 117 ----------------------NLLGLPTATA---------------------------- 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +R ++L+ T SAG+++NK LAK+AS KP + + + +LPI +
Sbjct: 127 VAKAIRAEILERTGLVASAGVSYNKFLAKVASDHRKPNALFVITPAMGPDFVAALPIGRF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ G + + LG+ T DL ++ ++L+E++G + G + +ARGI G V+A +
Sbjct: 187 HGV-GPVTEAKMKRLGIETGADLRAWTPERLRETFG-SAGAYYHAVARGIDGRPVRAHRV 244
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 245 RKSIGAETTF 254
>gi|19568913|gb|AAL91968.1|AF483105_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 146/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L + P+ K+ + G
Sbjct: 121 RQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTFPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|420369939|ref|ZP_14870578.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
gi|391320753|gb|EIQ77562.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
Length = 288
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 148/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E +G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGV-ISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YL
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D DS C L
Sbjct: 108 ------------------------------DVTDS--------VHCHGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|320547508|ref|ZP_08041794.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
gi|320447853|gb|EFW88610.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
Length = 366
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 161/370 (43%), Gaps = 70/370 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+L+G P + GG G+++ YEAR +GV +M
Sbjct: 12 SRKIIHIDMDAFFASVEERDNPELKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G ++ I R E SIDE YLD+T
Sbjct: 72 SSMEAYERCPQAIFIS-------GNYQKYREIGMQIREIFKRYTDLVEPMSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 125 ENK------------------------LGIKS---------------------------- 132
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + +E TCSAG+++NK LAKLAS +KP T V + L LP+
Sbjct: 133 AIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFDKPKGLTLVMPEDAEDFLKELPV 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L ++LGV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 193 EKFHGVGKKSVEKL-HQLGVYTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVKP 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS GS +++ + L A ++ +++ + R+ + L +N +I + L
Sbjct: 251 NRIRKSIGSERTY--GKLLYDDADIKSEISK----NARRVVNSLARNNKIGRIVVLKVRY 304
Query: 368 FKSSDSDSRK 377
S RK
Sbjct: 305 ADFSTLTKRK 314
>gi|357237453|ref|ZP_09124794.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
gi|356753643|gb|EHI70746.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
Length = 365
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 154/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ ++
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPNLKGKPVVIAKDPRETGGRGVVSTCNYEARKYGIHSAI 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G ++ I R + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFIS-------GNYHKYKEIGYQIREIFKRYTDQVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
LGL+S
Sbjct: 124 QNK------------------------LGLKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T + L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDYQKPHGLTLILPEDALTFLKELPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L+ E+G+ T DLL E L + +G G L+ ARGIS V+A
Sbjct: 192 AKFHGVGKKSVIKLE-EMGIFTGADLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKA 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L V+ +++ LSE L S N++ TL L
Sbjct: 250 NRIRKSIGSERTY--GKLLYEEKDVKAEISKNASRLSELLKS----NQKSGKTLVL 299
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 163/406 (40%), Gaps = 75/406 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVA----WDGTRSVICAASYEARKFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 60 VATAKRLCPQA--VFVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D + +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTQNFENVPYAS 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ + GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 182 IPGV-GKVTLKKMNALGIQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKAER 239
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
+ + P +L V+S L L E+L ++ + K + L H
Sbjct: 240 ERLQISTEITLPEDLSLAQVSS---HLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRII 296
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQ------EDTFNLFQAGLREFL 409
+ P + L+ +Q ED F L G+ L
Sbjct: 297 TRSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIGIGVSHLL 342
>gi|417861785|ref|ZP_12506840.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
gi|338822189|gb|EGP56158.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
Length = 359
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 137/315 (43%), Gaps = 64/315 (20%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
DS+ R I H+D+D FY VEQR P LRGLP AV G + A YEAR +GV
Sbjct: 2 DSTAVRKIIHIDMDAFYASVEQRDNPALRGLPVAV--GGSAARGVVAAASYEARTFGVHS 59
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLD 125
+M A+ CP + V +P YR ++ I A E S+DE YLD
Sbjct: 60 AMPSVTARRKCPDLIFV-LP------RFDVYRQVSQQIREIFAEYTPLIEPLSLDEAYLD 112
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T+ + M E+ E
Sbjct: 113 VTENLKGM----------EIATE------------------------------------- 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++L
Sbjct: 126 -----IALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEAL 180
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+KK +G ++ G+ T DL S LQ+ +G +G + +NIARGI +V
Sbjct: 181 AVKKFHGVGPATAERMRRH-GIETGLDLKSKSLGFLQQHFG-KSGPYFYNIARGIDERQV 238
Query: 306 QARLLPKSHGSGKSF 320
+ + KS G+ +F
Sbjct: 239 RPDRIRKSVGAEDTF 253
>gi|402487090|ref|ZP_10833915.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
gi|401813920|gb|EJT06257.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
Length = 363
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRGLP AV + G + A YEAR +GV +M
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGLPVAV--GSPAARGVVAAASYEARRFGVHSAMPSV 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A+ CP + V K Y+ ++ +I A E S+DE YLD+T+
Sbjct: 69 TAQRKCPGLIFV-------KPRFDVYKAVSLQIRAIFAEYTPMIEPLSLDEAYLDVTENL 121
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ M E+ E
Sbjct: 122 KGM----------EIATE------------------------------------------ 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ T T SAGI++NK LAK+ASG NKP Q + + ++ LP+KK
Sbjct: 130 IADEIRAKIKATTGLTASAGISYNKFLAKMASGENKPNGQFVITPKNGPAFVERLPVKKF 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + + LG+ T DL + + + L E +G +G + IARG+ +V+ +
Sbjct: 190 HGVGPATAEKM-HRLGIETGADLRRMTLEFLVEHFG-KSGPYFHGIARGLDNRQVRPDRV 247
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 148/354 (41%), Gaps = 73/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVA----WRGMRSVVCAASYEARVFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + + VP D + Y+ +V I R TD
Sbjct: 58 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFQRH---------------TDL 95
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE L + G LA
Sbjct: 96 IE-------PLSLDEA--------YLDVTEPKGE---------------------LATAT 119
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L LP+ K
Sbjct: 120 EIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTPLPVSK 179
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G + L ELG+ TVGDL E +L+ +G + G L+ ARGI V+A
Sbjct: 180 VPGVGKVMQAKL-AELGIVTVGDLRTHGEVELEARFG-SFGLRLYQRARGIDQRPVEADQ 237
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L L+E+ + + +RIA T+ L
Sbjct: 238 QVQSISSEDTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|393765264|ref|ZP_10353849.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
gi|392729263|gb|EIZ86543.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
Length = 360
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 138/310 (44%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P LRGLP AV E G ++A YEAR +GV+ +M
Sbjct: 8 RKIIHIDMDAFYASVEQRDDPALRGLPLAVGGSRER--GVVMAASYEARRFGVRSAMPSA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
A+ +CP + V K YR E+ ++ AR E ++DE YLD+T+
Sbjct: 66 TARRLCPDLLFV-------KPRFEVYRAVSEEIRAVFARHTPVIEPVALDEAYLDVTE-- 116
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
++LGL +
Sbjct: 117 ----------------------NLLGLPTATA---------------------------- 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +R ++L+ T SAG+++NK LAK+AS KP + + + +LPI +
Sbjct: 127 VAKAIRAEILERTGLVASAGVSYNKFLAKVASDYRKPDALFVITPAMGPDFVAALPIGRF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ G + + LG+ T DL + D+L+E++G + G + +ARG+ V+A +
Sbjct: 187 HGV-GPVTEAKMKRLGIETGADLRAWDPDRLREAFG-SAGAYYHAVARGLDMRPVRAHRV 244
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 245 RKSIGAETTF 254
>gi|425738440|ref|ZP_18856703.1| DNA polymerase IV [Staphylococcus massiliensis S46]
gi|425479672|gb|EKU46845.1| DNA polymerase IV [Staphylococcus massiliensis S46]
Length = 356
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 163/380 (42%), Gaps = 85/380 (22%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYG 63
G R I H+D+D F+ QVE R KLRG P V GG G+++ YEAR YG
Sbjct: 2 GERRIIHIDMDYFFAQVEVRDNEKLRGKPVIV-------GGKASHRGVVSTASYEARKYG 54
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 122
V +M +A ++CP VQ +YR A ++ I + + E S+DE
Sbjct: 55 VHSAMPMVQAHKLCPNGYYVQ-------PRFEAYREASGIIMDIFKSYTEKVEPLSLDEA 107
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD--ADH 180
YLD+T+ L R D A H
Sbjct: 108 YLDITE--------------------------------------------LVRPDLPASH 123
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
I +R + +T+ T SAG+++NK LAKLASGMNKP T + ++ V
Sbjct: 124 ----------IAEYIRRDIYDKTQLTSSAGVSYNKFLAKLASGMNKPNGLTIIDYNHVHE 173
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
+L +L I +G + + + G+ T DL + S D+L +G G +N RGI
Sbjct: 174 ILMNLDIGDFPGVGSRSKEKMHHH-GIYTGADLYQKSMDELIRWFG-KRGVGFYNKVRGI 231
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
EV+A + KS G+ ++F ++ + + Q ELS + L + ++ A T
Sbjct: 232 DHREVKAERIRKSVGTERTF------QSDVNDDALILQKIRELSHKTSERLGKLQKSAGT 285
Query: 361 LTLHASAFKSSDSDSRKKFP 380
+T+ +K ++ P
Sbjct: 286 VTVKIKTYKYETISKQRTLP 305
>gi|326803856|ref|YP_004321674.1| putative DNA polymerase IV [Aerococcus urinae ACS-120-V-Col10a]
gi|326650180|gb|AEA00363.1| putative DNA polymerase IV [Aerococcus urinae ACS-120-V-Col10a]
Length = 372
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 148/361 (40%), Gaps = 70/361 (19%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQY-NEWKGGGLIAVG-YEARNYG 63
P +R I HVD+D FY +EQR P LRG P + Q+ E G G++A YEAR +G
Sbjct: 12 PKIDPSRKILHVDMDAFYASIEQRDHPHLRGKPVIIAQHPKENSGKGVVATASYEARKFG 71
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 122
V +M EA +CPQ V K + YR G EV + E SIDE
Sbjct: 72 VHSAMSASEAYRLCPQAYFV-------KGNKDYYRKVGEEVRDVFREYTDIIEPLSIDEA 124
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
+LD+T+ +H
Sbjct: 125 FLDVTN--------------------------------------------------NHYQ 134
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
L A V ++ + + TCS G+++NK +AKLAS +KP T + L
Sbjct: 135 LLYAMDV--AERIQKDIYHKLGLTCSIGVSYNKFIAKLASDFHKPHGMTIITPKRALAFL 192
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+ LPI+K +G + + +EL + DL + S++ +G G L+ RG+
Sbjct: 193 EELPIEKFYGIGKRTSEKM-HELNIYKGKDLKQLSQEDCINYFG-KAGIVLYERVRGVDD 250
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V+AR KS+G+ + L +N + L++++ S L+ T+T
Sbjct: 251 RPVKARTSRKSNGTETT------LYPFLYHDDQVNDVLRHLAQKVASSLQDKNIQGQTVT 304
Query: 363 L 363
L
Sbjct: 305 L 305
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 173/408 (42%), Gaps = 86/408 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIHRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDAMCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLH 364
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVLK 300
Query: 365 ASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ------AGLR 406
+ R P L A+I++ ++F AG+R
Sbjct: 301 VRYADFTTLTKRVTLPE----LTRNVAQIEQVAGDIFDSLSENPAGIR 344
>gi|452820346|gb|EME27389.1| DNA polymerase iota subunit [Galdieria sulphuraria]
Length = 525
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 158/347 (45%), Gaps = 44/347 (12%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKL-RGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S + I +D+D FY QVE RK+P + R P Q N ++ Y AR GVK+
Sbjct: 11 SAFKTIIALDMDYFYCQVELRKRPDIDRNRPVGAFQRN-----LVVTCNYPARAAGVKKL 65
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG---RCERASIDEVYL 124
M +A ++CP + L+ +DL YR A SE++S++ E +DE ++
Sbjct: 66 MLVKDAYDLCPDLILLDA------SDLKDYRIACSEIISLIKDTFGVVAVENLGLDEFFI 119
Query: 125 DLT----DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
D+T D E ET ++K +E +D C C
Sbjct: 120 DVTKILCDREEEYSCET-----------SIKGFCWPVEERDS-----------CICFEKE 157
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
K + E+R + + + TCS G++++K+L+KLA+ ++KP +QT + V+
Sbjct: 158 EAKPFVAASHLCFEIRETIKSKLQLTCSGGLSNSKLLSKLAASIHKPDEQTVILPQCVES 217
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L +L ++K+ +G SL + V+T L ++L E +G G L+NI RGI
Sbjct: 218 YLSNLNLRKLPGIGSATYQSLVDHFLVSTCEQLRCIPVERLVEVFGSRLGIRLFNICRGI 277
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
E V L KS + F + + V+ +L + E L +RL
Sbjct: 278 DEESVHDTSLVKSISCEERFSKT---ERWSEVERYLGIVVERLLDRL 321
>gi|157114087|ref|XP_001657975.1| DNA polymerase iota [Aedes aegypti]
gi|108877445|gb|EAT41670.1| AAEL006715-PA [Aedes aegypti]
Length = 654
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 172/377 (45%), Gaps = 33/377 (8%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQ-YNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+I HVD+D FY QVE+ P L+ P V Q +N ++ Y AR YG+K+ M
Sbjct: 15 RVIIHVDMDYFYAQVEEILDPSLKDKPVGVKQRFN------VVTSNYIAREYGIKKMMLI 68
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
+EA ++CP + LV DL+ Y+ +++ I+ + E+ +DE YLD+T
Sbjct: 69 NEATKLCPDLVLV------NGEDLTKYKQMSAKIHEIMHKFTPNVEKLGLDENYLDVTRE 122
Query: 130 AEAMLAETPPESLDEVDEEALKS--HILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
L + +++ E L++ + +D N S V C C D R L
Sbjct: 123 INDQLEQ-------KLNLEQLQNVEGFIYPPKEDSNLSDQEVFRRACSCGCDRR---LIL 172
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
+ ++R ++ E C AGIAHNK+LAKL G++K +QT + + + SL
Sbjct: 173 ASHMAKQIRDRIFCELGMKCCAGIAHNKLLAKLVGGVHKQDKQTVLLPNCAASFVRSLGT 232
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+K + +G K L+ E GV TV +L + +L + G+ + L ++ G V+
Sbjct: 233 VKSLTGIGDKTAQILE-ECGVRTVQELQEAPLHQLSKRLGYEQSSKLKEMSFGKDDTPVK 291
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
PKS G S P A+ A + L L + + D I T+ H S
Sbjct: 292 QTGKPKSVGLEDSCP---AISIRADAEDKFRHLLVRLVKNIADDGRIPIAIKVTVRKHDS 348
Query: 367 AFKSSDSDSR--KKFPS 381
K+S + + K PS
Sbjct: 349 VKKTSHRECKQDKILPS 365
>gi|410681235|ref|YP_006933637.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
gi|409693824|gb|AFV38684.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
Length = 323
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>gi|357975695|ref|ZP_09139666.1| DNA-directed DNA polymerase [Sphingomonas sp. KC8]
Length = 361
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 145/333 (43%), Gaps = 66/333 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQR QP+LRG P AV N G + A YEAR YGV+ +M
Sbjct: 7 RKIIHIDMDAFFASVEQRDQPELRGRPVAVGGSN--ARGVVAAASYEARKYGVRSAMPSV 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAA 130
A CP EL VP Y+ ++ +I A E S+DE Y+D+T+
Sbjct: 65 TAMRKCP--ELAFVP-----PRFDVYKAVSGQIRAIFADYSDLVEPLSLDEAYVDVTENR 117
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
A+ + T AT +E
Sbjct: 118 RALPSAT-----------------------------ATAEE------------------- 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+R ++L ET T SAGI++NK LAK+AS NKP Q + + ++ LP+ +
Sbjct: 130 ----IRARILAETGLTASAGISYNKFLAKIASDQNKPNGQCVITPAQGAAFIEHLPVGRF 185
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K L N LG+ T DL + LQ+ +G G W I+RGI V
Sbjct: 186 HGVGPKTAEKL-NRLGIFTGADLRRQELGWLQQHFG-KAGHWYHAISRGIDERAVVPDRP 243
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS GS ++ L T A+V+ + + +E+
Sbjct: 244 RKSSGSETTY--SHDLTTPAAVEDGVRAMADEV 274
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 147/336 (43%), Gaps = 64/336 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P+LRG AV E G + A YEAR YGV+ +M
Sbjct: 3 RKIIHVDMDAFYASVEQLDFPELRGKALAVGGSEER--GVIAAASYEARKYGVRSAMSAM 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK+ CP + V+ R K R+ E ++ E ++DE +LD+T
Sbjct: 61 MAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLV------EPLALDEAFLDVT---- 110
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
E+K G S LI
Sbjct: 111 --------------------------ENKIGCPS----------------------ATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+RM++L+ T T S GI+ NK LAK+AS NKP Q T+ V L+ L IKK
Sbjct: 123 AHEIRMKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKKFF 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G K + + LG+ T DL S + L E +G G ++I RG+S V+
Sbjct: 183 GIGKKTADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNRTI 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G+ ++F L + ++ L+ L EELS RL
Sbjct: 241 KSVGTERTF--DENLSSEVFIETKLDILVEELSLRL 274
>gi|424125733|ref|ZP_17858963.1| DNA polymerase IV [Escherichia coli PA9]
gi|390692917|gb|EIN67571.1| DNA polymerase IV [Escherichia coli PA9]
Length = 345
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
+D+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 MDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|225869835|ref|YP_002745782.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
gi|225699239|emb|CAW92538.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
Length = 367
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 173/401 (43%), Gaps = 72/401 (17%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+L+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPELKGKPVVIGKNPRESGGRGVVSTCNYEARRFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + D + YR G ++ I R + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFKRYTDQVEPVSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + + TCSAG+++NK LAKLAS KP T V L+ LPI
Sbjct: 132 ALKIARLIQHDIWNSLQLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKRTVERL-HEMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS S +++ + L A ++ L++ + R+ LE NK++ + L
Sbjct: 250 NRMRKSISSERTY--AKLLYQEADIKAELSK----HARRVADLLEANKKLGRIIVLKVRY 303
Query: 368 FKSSDSDSRKKFPSKSCPLRYGTAKIQE--DTFNLFQAGLR 406
+ R P + R +E D+ QAG+R
Sbjct: 304 ADFTTLTKRVSLPELTRDARIIDQVARELFDSLEEHQAGIR 344
>gi|426253844|ref|XP_004020601.1| PREDICTED: DNA polymerase iota isoform 3 [Ovis aries]
Length = 702
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 164/380 (43%), Gaps = 64/380 (16%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SS R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR GVK+
Sbjct: 36 SSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKL 90
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M +AKE CPQ+ LV DL+ YR E+ +T
Sbjct: 91 MSVRDAKEKCPQLVLV------NGEDLTRYR----------------------EMSYKVT 122
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ E L + DE+ + H+ +S + D+ L
Sbjct: 123 EMVEKRLEQL---QSDELSALTVSGHVYNNQSVNPRDTLHI---------------RLLV 164
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 246
G I E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 165 GSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLNH 224
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 225 IKEIPGIGYKTAKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDDSPVT 283
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
P+S SF ++ ++ L L R+C Q+ R HT+ L
Sbjct: 284 PSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLL----NRVC----QDGRKPHTVRLVIR 335
Query: 367 AFKSSDSDSRKKFPSKSCPL 386
+ S +R+ S+ CP+
Sbjct: 336 RYSSEKLCNRE---SRQCPI 352
>gi|417688076|ref|ZP_12337325.1| DNA polymerase IV [Shigella boydii 5216-82]
gi|332094996|gb|EGJ00035.1| DNA polymerase IV [Shigella boydii 5216-82]
Length = 345
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 147/339 (43%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
+D+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 MDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH---- 108
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
C A LI E+
Sbjct: 109 --------------------------------------CHGSA----------TLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 139/319 (43%), Gaps = 67/319 (21%)
Query: 6 PDSS---GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNY 62
PD S R I HVD+D FY VEQR +P+L G P AV G + A YEAR +
Sbjct: 24 PDRSTGVSVRKIIHVDMDAFYASVEQRDKPELLGKPVAV--GGSAARGVVAAASYEARAF 81
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDE 121
GV +M AK CP +L+ VP YR ++ I A E S+DE
Sbjct: 82 GVHSAMPSVTAKRKCP--DLIFVP-----PRFDVYRQVSHQIREIFAEYTPLIEPLSLDE 134
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
YLD+T+ + M E+ E
Sbjct: 135 AYLDVTENLKGM----------EIATE--------------------------------- 151
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G
Sbjct: 152 ---------IALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGF 202
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+++LP+K+ +G +Q G+ T DL S LQ +G +G++ + IARGI
Sbjct: 203 VEALPVKRFHGVGPATAERMQRH-GIETGLDLKSKSLQFLQTHFG-KSGSYFYGIARGID 260
Query: 302 GEEVQARLLPKSHGSGKSF 320
+V+A + KS G+ +F
Sbjct: 261 ERQVRADRIRKSVGAEDTF 279
>gi|400290800|ref|ZP_10792827.1| DNA polymerase IV [Streptococcus ratti FA-1 = DSM 20564]
gi|399921591|gb|EJN94408.1| DNA polymerase IV [Streptococcus ratti FA-1 = DSM 20564]
Length = 368
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 136/313 (43%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R PKLRG P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDDPKLRGKPLVIGADPRQTGGRGVVSTCNYEARKFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ V + + + YR G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFV-------RGNYAKYREIGMQVRDIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E P+ +
Sbjct: 124 --------ENKPK--------------------------------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS NKP T + + L LPI
Sbjct: 132 AVKIAKLIQHDIWNELHLTCSAGVSYNKFLAKLASDYNKPRGLTVILPDEAEEFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +EL V T DL + E L + +G G L+ ARGIS V+
Sbjct: 192 EKFYGVGKKSVEKL-HELNVFTGKDLQQIPEMTLIDLFG-RFGFDLYRKARGISNSPVKN 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRIRKSIGSERTY 262
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 127/298 (42%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE +QP L+GLP V W G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELHEQPHLKGLPVVVA----WDGTRSVICAASYEARKFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ VQ YR +++ ++ R Y DL +
Sbjct: 60 VATAKRLCPQAVFVQ-------PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D + +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTQNFENIPYAS 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 182 IPGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 129/298 (43%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVA----WDGTRSVICAASYEARKFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 60 VATAKRLCPQA--VFVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D + +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTRNFENIPYAS 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 182 IPGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 143/312 (45%), Gaps = 62/312 (19%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+G R I H+D+D FY VEQR P LRG P AV + + G + A YEAR +GV+ +M
Sbjct: 4 AGIRKIIHIDMDAFYASVEQRDDPSLRGRPLAV--GHGAQRGVVAAASYEARKFGVRSAM 61
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
A CPQ LV VP EV ++R+ I E++ D TD
Sbjct: 62 PSTTALAKCPQ--LVFVP-------------PRFEVYKAVSRQ-------IHEIFADYTD 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
E P SLDE + + ++ GLE+ + T KE
Sbjct: 100 LIE-------PLSLDEAYLD-VTANRRGLET-----ASETAKE----------------- 129
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+R ++L+ T T SAG+++NK LAKLAS KP Q VP + + +LPI
Sbjct: 130 ------IRARILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVPPGKGEAFVQTLPIG 183
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
+ +G ++ LGV T DL + S LQ+ +G +G W + IARG V
Sbjct: 184 RFHGVGAVTEAKMKR-LGVHTGEDLHRQSLAFLQQHFG-RSGPWYYAIARGEDDRRVNPD 241
Query: 309 LLPKSHGSGKSF 320
+ KS GS +F
Sbjct: 242 RVRKSSGSETTF 253
>gi|238787934|ref|ZP_04631730.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
gi|238723882|gb|EEQ15526.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
Length = 352
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 146/346 (42%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASLHIREIFARYTSLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D +D A C L
Sbjct: 108 ------------------------------DVSDCPA--------CSGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAQEIRQSIAAELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLPFLHDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + LQ ELG+ T D+ FS+ +L + +G G LW + GI EV L
Sbjct: 182 PGVGKVTASKLQ-ELGLLTCSDVQHFSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L E+L ++LE R
Sbjct: 240 RKSVGVERTL--------AEDIHDWSS--CESLIEQLYTELETRLR 275
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>gi|419706767|ref|ZP_14234277.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
gi|383283489|gb|EIC81443.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
Length = 368
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 139/314 (44%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPNLKDKP-VIIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAIFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T ++ LG++S
Sbjct: 123 T------------------------TNKLGIKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRIRKSIGSERTY 262
>gi|321470529|gb|EFX81505.1| hypothetical protein DAPPUDRAFT_3781 [Daphnia pulex]
Length = 382
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 169/360 (46%), Gaps = 45/360 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I H+D+DCFY QVE P L G P + Q N ++ YEAR GV++ M
Sbjct: 1 RVIIHIDIDCFYAQVETILNPSLCGKPLGIKQKN-----IVVTCNYEARALGVEKLMSIK 55
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
A E CP + L A G+ DL YR+ ++ IL + E+ +DE ++D++
Sbjct: 56 TALEKCPSLVL-----ANGE-DLKKYRDMSEKIYQILQSFSPFVEKLGLDENFIDISHKI 109
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
PE EV HI E K+ +++ C C R L G +
Sbjct: 110 NK-----SPEIKPEVS-----GHIF--EEKNSDET--------CACGCTDR---LKEGSI 146
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R Q+ E T AGIA NK+LAKL +KP QQTT+ +S L+ SL K
Sbjct: 147 IAQEMRNQLKSELGITSCAGIACNKLLAKLVGATHKPNQQTTLFSASSLNLMKSL--KHP 204
Query: 251 KQLGGKLGTSLQNE---LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + G +G+++ + LG+ T+ L KL E+ G T + ++ GI V+
Sbjct: 205 RNIPG-IGSAMNRKLEVLGIDTIEKLQATDLFKLIEALGVKTANQIQQLSFGIDDSHVKI 263
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL-TLHAS 366
PKS G+ FP +K+ V+ L L + + E + D + ++ T+ LHA+
Sbjct: 264 TDRPKSIGAEDGFP---TIKSETEVRKKLKCLLDRVWELVEKDGRRPSQVKLTVRKLHAT 320
>gi|313889773|ref|ZP_07823415.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|416852396|ref|ZP_11909541.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
gi|313121818|gb|EFR44915.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|356739885|gb|EHI65117.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
Length = 364
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 142/326 (43%), Gaps = 66/326 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE R P L+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEMRDNPDLKGKPVVIAKDPRETGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYGKYREVGLEIRRIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G L
Sbjct: 124 ------------------------------ENKLG----------------------LTS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T + + L+ LPI
Sbjct: 132 AVKIAKLIQYDIWKELHLTCSAGVSYNKFLAKLASDFEKPHGLTLILPDQAQPFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ DLL SE L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGIKSVEKL-HEMGIYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISSSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQ 333
+ KS GS +++ + L T A V+
Sbjct: 250 DRIRKSIGSERTY--SKLLYTEADVK 273
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|228477003|ref|ZP_04061641.1| DNA polymerase IV [Streptococcus salivarius SK126]
gi|228251022|gb|EEK10193.1| DNA polymerase IV [Streptococcus salivarius SK126]
Length = 368
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 139/314 (44%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPV-IIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T ++ LG++S
Sbjct: 123 T------------------------TNKLGIKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYNIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|410595093|ref|YP_006951820.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
gi|410518732|gb|AFV72876.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
Length = 364
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 155/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR G EV I + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKMG----------------------IKS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LPI
Sbjct: 132 AVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + LGV T DLL SE L + +G G + ARGI+ V+
Sbjct: 192 EKFHGVGKRSVEKL-HALGVYTGEDLLSLSEVSLIDMFG-RFGYDRYRKARGINASPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 250 DRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|418069525|ref|ZP_12706802.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
gi|357536056|gb|EHJ20087.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
Length = 374
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 168/400 (42%), Gaps = 69/400 (17%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I HVD+D FY +E R P+ R P V + GG G++A Y AR GV +M
Sbjct: 14 SRKIIHVDMDAFYASIEMRDHPEFRTKPLVVARDPRKTGGHGVVATANYVARQSGVHSAM 73
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+A E+CPQ + + P D YR ++ I + E ++DE YLD+T
Sbjct: 74 PAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHIFHEFTDKIETVALDEAYLDVT 126
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D D++ ++
Sbjct: 127 D-----------------DKKGMQD----------------------------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 135 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 194
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 195 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 252
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS G +++ P L T V L+ + ++L++ + + K + L L S
Sbjct: 253 QRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 308
Query: 368 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 406
F++ + +R +F Y AK D F G+R
Sbjct: 309 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|384415915|ref|YP_005625277.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|320016419|gb|ADV99990.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 352
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPFAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>gi|108808712|ref|YP_652628.1| DNA polymerase IV [Yersinia pestis Antiqua]
gi|108811029|ref|YP_646796.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|145600117|ref|YP_001164193.1| DNA polymerase IV [Yersinia pestis Pestoides F]
gi|149364926|ref|ZP_01886961.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
gi|161511436|ref|NP_992091.2| DNA polymerase IV [Yersinia pestis biovar Microtus str. 91001]
gi|162421814|ref|YP_001607653.1| DNA polymerase IV [Yersinia pestis Angola]
gi|165926575|ref|ZP_02222407.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
gi|165935841|ref|ZP_02224411.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
gi|166212896|ref|ZP_02238931.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
gi|167421635|ref|ZP_02313388.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423673|ref|ZP_02315426.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167467178|ref|ZP_02331882.1| DNA polymerase IV [Yersinia pestis FV-1]
gi|218930258|ref|YP_002348133.1| DNA polymerase IV [Yersinia pestis CO92]
gi|229838837|ref|ZP_04458996.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896011|ref|ZP_04511181.1| DNA polymerase IV [Yersinia pestis Pestoides A]
gi|229899406|ref|ZP_04514549.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
195]
gi|229901251|ref|ZP_04516373.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|294504948|ref|YP_003569010.1| DNA polymerase IV [Yersinia pestis Z176003]
gi|384127272|ref|YP_005509886.1| DNA polymerase IV [Yersinia pestis D182038]
gi|384138931|ref|YP_005521633.1| DNA polymerase IV [Yersinia pestis A1122]
gi|420548296|ref|ZP_15046116.1| DNA polymerase IV [Yersinia pestis PY-01]
gi|420553652|ref|ZP_15050898.1| DNA polymerase IV [Yersinia pestis PY-02]
gi|420559256|ref|ZP_15055772.1| DNA polymerase IV [Yersinia pestis PY-03]
gi|420564644|ref|ZP_15060606.1| DNA polymerase IV [Yersinia pestis PY-04]
gi|420569691|ref|ZP_15065190.1| DNA polymerase IV [Yersinia pestis PY-05]
gi|420575361|ref|ZP_15070322.1| DNA polymerase IV [Yersinia pestis PY-06]
gi|420580671|ref|ZP_15075150.1| DNA polymerase IV [Yersinia pestis PY-07]
gi|420586015|ref|ZP_15079991.1| DNA polymerase IV [Yersinia pestis PY-08]
gi|420591130|ref|ZP_15084588.1| DNA polymerase IV [Yersinia pestis PY-09]
gi|420596491|ref|ZP_15089408.1| DNA polymerase IV [Yersinia pestis PY-10]
gi|420602178|ref|ZP_15094470.1| DNA polymerase IV [Yersinia pestis PY-11]
gi|420607609|ref|ZP_15099380.1| DNA polymerase IV [Yersinia pestis PY-12]
gi|420613002|ref|ZP_15104216.1| DNA polymerase IV [Yersinia pestis PY-13]
gi|420618382|ref|ZP_15108904.1| impB/mucB/samB family protein [Yersinia pestis PY-14]
gi|420623663|ref|ZP_15113664.1| DNA polymerase IV [Yersinia pestis PY-15]
gi|420628758|ref|ZP_15118288.1| DNA polymerase IV [Yersinia pestis PY-16]
gi|420633882|ref|ZP_15122879.1| DNA polymerase IV [Yersinia pestis PY-19]
gi|420639089|ref|ZP_15127568.1| DNA polymerase IV [Yersinia pestis PY-25]
gi|420644535|ref|ZP_15132533.1| DNA polymerase IV [Yersinia pestis PY-29]
gi|420649846|ref|ZP_15137335.1| DNA polymerase IV [Yersinia pestis PY-32]
gi|420655496|ref|ZP_15142413.1| DNA polymerase IV [Yersinia pestis PY-34]
gi|420660989|ref|ZP_15147329.1| DNA polymerase IV [Yersinia pestis PY-36]
gi|420666281|ref|ZP_15152093.1| DNA polymerase IV [Yersinia pestis PY-42]
gi|420671132|ref|ZP_15156514.1| impB/mucB/samB family protein [Yersinia pestis PY-45]
gi|420676485|ref|ZP_15161380.1| DNA polymerase IV [Yersinia pestis PY-46]
gi|420682109|ref|ZP_15166460.1| DNA polymerase IV [Yersinia pestis PY-47]
gi|420687445|ref|ZP_15171201.1| DNA polymerase IV [Yersinia pestis PY-48]
gi|420692654|ref|ZP_15175773.1| DNA polymerase IV [Yersinia pestis PY-52]
gi|420698427|ref|ZP_15180850.1| DNA polymerase IV [Yersinia pestis PY-53]
gi|420704266|ref|ZP_15185490.1| impB/mucB/samB family protein [Yersinia pestis PY-54]
gi|420709604|ref|ZP_15190235.1| DNA polymerase IV [Yersinia pestis PY-55]
gi|420715084|ref|ZP_15195104.1| DNA polymerase IV [Yersinia pestis PY-56]
gi|420720594|ref|ZP_15199828.1| DNA polymerase IV [Yersinia pestis PY-58]
gi|420726063|ref|ZP_15204643.1| DNA polymerase IV [Yersinia pestis PY-59]
gi|420731652|ref|ZP_15209667.1| DNA polymerase IV [Yersinia pestis PY-60]
gi|420736664|ref|ZP_15214194.1| DNA polymerase IV [Yersinia pestis PY-61]
gi|420742140|ref|ZP_15219115.1| DNA polymerase IV [Yersinia pestis PY-63]
gi|420747868|ref|ZP_15223957.1| DNA polymerase IV [Yersinia pestis PY-64]
gi|420753296|ref|ZP_15228806.1| DNA polymerase IV [Yersinia pestis PY-65]
gi|420759087|ref|ZP_15233462.1| DNA polymerase IV [Yersinia pestis PY-66]
gi|420764360|ref|ZP_15238096.1| DNA polymerase IV [Yersinia pestis PY-71]
gi|420769578|ref|ZP_15242776.1| DNA polymerase IV [Yersinia pestis PY-72]
gi|420774559|ref|ZP_15247286.1| DNA polymerase IV [Yersinia pestis PY-76]
gi|420780190|ref|ZP_15252244.1| DNA polymerase IV [Yersinia pestis PY-88]
gi|420785777|ref|ZP_15257123.1| DNA polymerase IV [Yersinia pestis PY-89]
gi|420790913|ref|ZP_15261741.1| impB/mucB/samB family protein [Yersinia pestis PY-90]
gi|420796437|ref|ZP_15266706.1| DNA polymerase IV [Yersinia pestis PY-91]
gi|420801503|ref|ZP_15271257.1| DNA polymerase IV [Yersinia pestis PY-92]
gi|420806852|ref|ZP_15276103.1| DNA polymerase IV [Yersinia pestis PY-93]
gi|420812220|ref|ZP_15280924.1| impB/mucB/samB family protein [Yersinia pestis PY-94]
gi|420817701|ref|ZP_15285875.1| DNA polymerase IV [Yersinia pestis PY-95]
gi|420823038|ref|ZP_15290664.1| DNA polymerase IV [Yersinia pestis PY-96]
gi|420828117|ref|ZP_15295230.1| DNA polymerase IV [Yersinia pestis PY-98]
gi|420833803|ref|ZP_15300365.1| DNA polymerase IV [Yersinia pestis PY-99]
gi|420838668|ref|ZP_15304761.1| DNA polymerase IV [Yersinia pestis PY-100]
gi|420843863|ref|ZP_15309477.1| DNA polymerase IV [Yersinia pestis PY-101]
gi|420849525|ref|ZP_15314559.1| DNA polymerase IV [Yersinia pestis PY-102]
gi|420855194|ref|ZP_15319357.1| DNA polymerase IV [Yersinia pestis PY-103]
gi|420860383|ref|ZP_15323930.1| DNA polymerase IV [Yersinia pestis PY-113]
gi|421764729|ref|ZP_16201517.1| DNA polymerase IV [Yersinia pestis INS]
gi|22095621|sp|Q8ZBZ9.1|DPO4_YERPE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123245611|sp|Q1C4D9.1|DPO4_YERPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123246681|sp|Q1CLD4.1|DPO4_YERPN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044621|sp|A4TPK8.1|DPO4_YERPP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|108774677|gb|ABG17196.1| DNA-damage-inducible protein P [Yersinia pestis Nepal516]
gi|108780625|gb|ABG14683.1| DNA-damage-inducible protein P [Yersinia pestis Antiqua]
gi|115348869|emb|CAL21825.1| DNA-damage-inducible protein P [Yersinia pestis CO92]
gi|145211813|gb|ABP41220.1| DNA-damage-inducible protein P [Yersinia pestis Pestoides F]
gi|149291339|gb|EDM41413.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
gi|162354629|gb|ABX88577.1| DNA polymerase IV [Yersinia pestis Angola]
gi|165915986|gb|EDR34593.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
gi|165921503|gb|EDR38700.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
gi|166205683|gb|EDR50163.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
gi|166960554|gb|EDR56575.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167057843|gb|EDR67589.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229681180|gb|EEO77274.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|229687808|gb|EEO79881.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
195]
gi|229695203|gb|EEO85250.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700934|gb|EEO88963.1| DNA polymerase IV [Yersinia pestis Pestoides A]
gi|262366936|gb|ACY63493.1| DNA polymerase IV [Yersinia pestis D182038]
gi|294355407|gb|ADE65748.1| DNA polymerase IV [Yersinia pestis Z176003]
gi|342854060|gb|AEL72613.1| DNA polymerase IV [Yersinia pestis A1122]
gi|391423288|gb|EIQ85787.1| DNA polymerase IV [Yersinia pestis PY-01]
gi|391423501|gb|EIQ85976.1| DNA polymerase IV [Yersinia pestis PY-02]
gi|391423731|gb|EIQ86187.1| DNA polymerase IV [Yersinia pestis PY-03]
gi|391438242|gb|EIQ99019.1| DNA polymerase IV [Yersinia pestis PY-04]
gi|391439370|gb|EIR00033.1| DNA polymerase IV [Yersinia pestis PY-05]
gi|391443104|gb|EIR03452.1| DNA polymerase IV [Yersinia pestis PY-06]
gi|391455219|gb|EIR14358.1| DNA polymerase IV [Yersinia pestis PY-07]
gi|391456075|gb|EIR15135.1| DNA polymerase IV [Yersinia pestis PY-08]
gi|391457889|gb|EIR16794.1| DNA polymerase IV [Yersinia pestis PY-09]
gi|391470945|gb|EIR28549.1| DNA polymerase IV [Yersinia pestis PY-10]
gi|391472365|gb|EIR29832.1| DNA polymerase IV [Yersinia pestis PY-11]
gi|391473326|gb|EIR30714.1| DNA polymerase IV [Yersinia pestis PY-12]
gi|391487070|gb|EIR43046.1| DNA polymerase IV [Yersinia pestis PY-13]
gi|391488589|gb|EIR44416.1| DNA polymerase IV [Yersinia pestis PY-15]
gi|391488735|gb|EIR44547.1| impB/mucB/samB family protein [Yersinia pestis PY-14]
gi|391503029|gb|EIR57266.1| DNA polymerase IV [Yersinia pestis PY-16]
gi|391503200|gb|EIR57414.1| DNA polymerase IV [Yersinia pestis PY-19]
gi|391508302|gb|EIR62055.1| DNA polymerase IV [Yersinia pestis PY-25]
gi|391518979|gb|EIR71651.1| DNA polymerase IV [Yersinia pestis PY-29]
gi|391520513|gb|EIR73061.1| DNA polymerase IV [Yersinia pestis PY-34]
gi|391521422|gb|EIR73888.1| DNA polymerase IV [Yersinia pestis PY-32]
gi|391533412|gb|EIR84686.1| DNA polymerase IV [Yersinia pestis PY-36]
gi|391536535|gb|EIR87511.1| DNA polymerase IV [Yersinia pestis PY-42]
gi|391538959|gb|EIR89716.1| impB/mucB/samB family protein [Yersinia pestis PY-45]
gi|391551942|gb|EIS01407.1| DNA polymerase IV [Yersinia pestis PY-46]
gi|391552172|gb|EIS01621.1| DNA polymerase IV [Yersinia pestis PY-47]
gi|391552555|gb|EIS01970.1| DNA polymerase IV [Yersinia pestis PY-48]
gi|391566782|gb|EIS14728.1| DNA polymerase IV [Yersinia pestis PY-52]
gi|391567935|gb|EIS15735.1| DNA polymerase IV [Yersinia pestis PY-53]
gi|391572454|gb|EIS19684.1| impB/mucB/samB family protein [Yersinia pestis PY-54]
gi|391581260|gb|EIS27162.1| DNA polymerase IV [Yersinia pestis PY-55]
gi|391583349|gb|EIS29015.1| DNA polymerase IV [Yersinia pestis PY-56]
gi|391593926|gb|EIS38164.1| DNA polymerase IV [Yersinia pestis PY-58]
gi|391596894|gb|EIS40770.1| DNA polymerase IV [Yersinia pestis PY-60]
gi|391598059|gb|EIS41825.1| DNA polymerase IV [Yersinia pestis PY-59]
gi|391611336|gb|EIS53525.1| DNA polymerase IV [Yersinia pestis PY-61]
gi|391611821|gb|EIS53957.1| DNA polymerase IV [Yersinia pestis PY-63]
gi|391614611|gb|EIS56458.1| DNA polymerase IV [Yersinia pestis PY-64]
gi|391624536|gb|EIS65159.1| DNA polymerase IV [Yersinia pestis PY-65]
gi|391629003|gb|EIS68989.1| DNA polymerase IV [Yersinia pestis PY-66]
gi|391635197|gb|EIS74386.1| DNA polymerase IV [Yersinia pestis PY-71]
gi|391637196|gb|EIS76143.1| DNA polymerase IV [Yersinia pestis PY-72]
gi|391647229|gb|EIS84881.1| DNA polymerase IV [Yersinia pestis PY-76]
gi|391650790|gb|EIS88039.1| DNA polymerase IV [Yersinia pestis PY-88]
gi|391655172|gb|EIS91939.1| DNA polymerase IV [Yersinia pestis PY-89]
gi|391660127|gb|EIS96316.1| impB/mucB/samB family protein [Yersinia pestis PY-90]
gi|391667690|gb|EIT02990.1| DNA polymerase IV [Yersinia pestis PY-91]
gi|391677177|gb|EIT11506.1| DNA polymerase IV [Yersinia pestis PY-93]
gi|391677928|gb|EIT12194.1| DNA polymerase IV [Yersinia pestis PY-92]
gi|391678432|gb|EIT12645.1| impB/mucB/samB family protein [Yersinia pestis PY-94]
gi|391691130|gb|EIT24081.1| DNA polymerase IV [Yersinia pestis PY-95]
gi|391694090|gb|EIT26785.1| DNA polymerase IV [Yersinia pestis PY-96]
gi|391695768|gb|EIT28314.1| DNA polymerase IV [Yersinia pestis PY-98]
gi|391708019|gb|EIT39312.1| DNA polymerase IV [Yersinia pestis PY-99]
gi|391711355|gb|EIT42327.1| DNA polymerase IV [Yersinia pestis PY-100]
gi|391712250|gb|EIT43147.1| DNA polymerase IV [Yersinia pestis PY-101]
gi|391724090|gb|EIT53702.1| DNA polymerase IV [Yersinia pestis PY-102]
gi|391724833|gb|EIT54368.1| DNA polymerase IV [Yersinia pestis PY-103]
gi|391727480|gb|EIT56691.1| DNA polymerase IV [Yersinia pestis PY-113]
gi|411174280|gb|EKS44313.1| DNA polymerase IV [Yersinia pestis INS]
Length = 352
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>gi|194904125|ref|XP_001981005.1| GG23702 [Drosophila erecta]
gi|190652708|gb|EDV49963.1| GG23702 [Drosophila erecta]
Length = 737
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 171/391 (43%), Gaps = 40/391 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR + Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVAKLMLIA 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
EA+ +CP + LV DL+ YR + +L E+ DE Y+D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLTPYRQMSQRIFDLLLNYTPLVEKLGFDENYMDVTALV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E A V E LK + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEAQLKPPVGHTYPADGTPLSN------CDCGCAQR---LAIGTR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
+ E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 VAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 227 ITGIGQK-TQCLLLEAGMSSVEQLQQCDMDIMRKKFGFETATRLRDLAFGRDTSSVRPTG 285
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 370 SSDSDSRKK------FPSKSCPLRYGTAKIQ 394
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|304385242|ref|ZP_07367587.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
gi|304328449|gb|EFL95670.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
Length = 377
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 168/400 (42%), Gaps = 69/400 (17%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I HVD+D FY +E R P+ R P V + GG G++A Y AR GV +M
Sbjct: 17 SRKIIHVDMDAFYASIEMRDHPEFRTKPLVVARDPRKTGGHGVVATANYVARQSGVHSAM 76
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+A E+CPQ + + P D YR ++ I + E ++DE YLD+T
Sbjct: 77 PAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHIFHEFTDKIETVALDEAYLDVT 129
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D D++ ++
Sbjct: 130 D-----------------DKKGMQD----------------------------------- 137
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 138 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 197
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 198 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 255
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS G +++ P L T V L+ + ++L++ + + K + L L S
Sbjct: 256 QRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 311
Query: 368 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 406
F++ + +R +F Y AK D F G+R
Sbjct: 312 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|21957698|gb|AAM84540.1|AE013699_2 damage-inducible protein P; putative tRNA synthetase [Yersinia
pestis KIM10+]
Length = 356
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 6 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 65 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 112 ------------------------------DVSDS-------------------LACGGS 122
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 123 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 183 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 240
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 241 DRLRKSVGVEKTL 253
>gi|322373597|ref|ZP_08048133.1| DNA polymerase IV [Streptococcus sp. C150]
gi|321278639|gb|EFX55708.1| DNA polymerase IV [Streptococcus sp. C150]
Length = 365
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 139/314 (44%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKP-VIIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T ++ LG++S
Sbjct: 123 T------------------------TNKLGIKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|187478526|ref|YP_786550.1| DNA polymerase IV [Bordetella avium 197N]
gi|115423112|emb|CAJ49643.1| DNA polymerase IV [Bordetella avium 197N]
Length = 360
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 131/298 (43%), Gaps = 68/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I H+D+D FY VEQR +P+LRG P V W G + A YEAR +GV +M
Sbjct: 6 RKIVHIDMDAFYASVEQRDRPELRGQPVVVA----WTGARSVVCAASYEARRFGVHSAMA 61
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + V VP D + YR +V I +R E S+DE YLD+T
Sbjct: 62 VSRAQRLCP--DAVYVP-----PDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVT- 113
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ LGL S
Sbjct: 114 -----------------------VNKLGLPSATA-------------------------- 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ +R Q+ +ET T SAG+A NK LAK+AS NKP + + V L LP++
Sbjct: 125 --VAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLRPAKVLEFLQPLPVR 182
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
K+ +G L++ LG+ TVGDL + +L+ +G G L +ARG+ EVQ
Sbjct: 183 KVPGVGRVTQARLES-LGIHTVGDLATCAPAELEHHFG-RHGLRLHELARGLDEREVQ 238
>gi|427439515|ref|ZP_18924170.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
gi|425788351|dbj|GAC44958.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
Length = 377
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 168/400 (42%), Gaps = 69/400 (17%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I HVD+D FY +E R P+LR P V + GG G++A Y AR GV +M
Sbjct: 17 SRKIIHVDMDAFYASIEMRDHPELRIKPLVVARDPRKTGGHGVVATANYVARQSGVHSAM 76
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+A E+CPQ + + P D YR ++ I + E ++DE YLD+T
Sbjct: 77 PAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHIFHEFTDKIETVALDEAYLDVT 129
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D D++ ++
Sbjct: 130 D-----------------DKKGMQD----------------------------------- 137
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 138 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 197
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 198 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 255
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS G +++ P L T V L + ++L++ + + K + L L S
Sbjct: 256 QRERKSIGKEETYGKP--LVTENEVDQRLRLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 311
Query: 368 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 406
F++ + +R +F Y AK D F G+R
Sbjct: 312 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|390958702|ref|YP_006422459.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
gi|390413620|gb|AFL89124.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
Length = 370
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 160/405 (39%), Gaps = 75/405 (18%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRS 67
G R I HVD+D FY VEQR P LRG P V WKG + A YEAR +G++ +
Sbjct: 5 GTRKIVHVDMDAFYASVEQRDDPALRGRPVVVA----WKGPRSVVCAASYEARRFGIRSA 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M A+ +CP E V VP D + Y+ V +I R T
Sbjct: 61 MPAVRAERLCP--EAVFVP-----PDFTRYKAVSHAVRAIFERH---------------T 98
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
DA E P SLDE D L
Sbjct: 99 DAIE-------PLSLDE-----------------------------AYLDVTTNKTSLPT 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI +R Q+ E T SAGIA NK LAK+AS KP Q + + L +LP+
Sbjct: 123 ATLIAKSIRQQIYDELNLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHEAEEFLRTLPV 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ + GK+ + E G+ VGD+ S L++ +G + L +ARGI V +
Sbjct: 183 GRIPGV-GKVTEARMAEAGIKLVGDIYAMSLATLEQHFG-SYSLRLHELARGIDHNPVVS 240
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHA 365
+ K + +FP L + + +C L+E++ E N R A T L L
Sbjct: 241 NRVRKQVSAEDTFPEDLPLTELEA------HVC-RLAEKVWKASEGNARRAKTVVLKLKT 293
Query: 366 SAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 410
F S + P +C TA D +L L +G
Sbjct: 294 KEFNSLTRSLTPRTPVSTCEDLISTALGLRDRVDLPAQQLYRLVG 338
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|166010983|ref|ZP_02231881.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
gi|167399408|ref|ZP_02304932.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|384123416|ref|YP_005506036.1| DNA polymerase IV [Yersinia pestis D106004]
gi|45435409|gb|AAS60968.1| DNA-damage-inducible protein P [Yersinia pestis biovar Microtus
str. 91001]
gi|165989983|gb|EDR42284.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
gi|167051912|gb|EDR63320.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|262363012|gb|ACY59733.1| DNA polymerase IV [Yersinia pestis D106004]
Length = 356
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 6 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 65 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 112 ------------------------------DVSDS-------------------LACGGS 122
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 123 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 183 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 240
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 241 DRLRKSVGVEKTL 253
>gi|161484857|ref|NP_668289.2| DNA polymerase IV [Yersinia pestis KIM10+]
gi|270489441|ref|ZP_06206515.1| DNA polymerase IV [Yersinia pestis KIM D27]
gi|270337945|gb|EFA48722.1| DNA polymerase IV [Yersinia pestis KIM D27]
Length = 352
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>gi|238752553|ref|ZP_04614027.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
gi|238709228|gb|EEQ01472.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
Length = 371
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 148/345 (42%), Gaps = 71/345 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 21 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRYGVRSAMPTA 79
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CPQ++++ +++Y+ A + I AR Y L +
Sbjct: 80 MALKLCPQLKVI-------PGRMAAYKEASLHIREIFAR------------YTPLIE--- 117
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D +D + +C A LI
Sbjct: 118 -------PLSLDEA-------------YLDVSDCQ------VCSGSA----------TLI 141
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 142 AQEIRQSIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLSFLHDLPLSKIP 201
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G LQ ELG+ T D+ FS+ +L + +G G LW + GI EV L
Sbjct: 202 GVGKVTAKRLQ-ELGLITCSDVQNFSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRLR 259
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W Q CE L E+L S+LE R
Sbjct: 260 KSVGVERTL--------AEDIHDW--QSCESLIEQLYSELETRLR 294
>gi|195108869|ref|XP_001999015.1| GI23309 [Drosophila mojavensis]
gi|193915609|gb|EDW14476.1| GI23309 [Drosophila mojavensis]
Length = 749
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 170/395 (43%), Gaps = 48/395 (12%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR P AV Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEELRNPSLRTQPLAVQQKN-----IVVTCNYVARARGVTKLMLVV 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EAK +C + LV DL+ YR ++ +L E+ DE Y+D+T
Sbjct: 70 EAKRLCADLVLV------NGEDLAPYRLMSQKIFDLLLNYTPDVEKLGFDENYMDVTSLV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E A + K + + DG A C C R LA G
Sbjct: 124 ELRQAHAA--------DAQFKPPVGHIYPADGTPLTA------CSCGCAQR---LAIGTR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +
Sbjct: 167 IAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSTYAEQFMRELNDLHS 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K T LQ E G+T+V L D +++ +GF T T L ++A G V
Sbjct: 227 VTGIGQKTQTLLQ-EAGITSVEQLQNCDMDFMRKKFGFETATKLRDLALGRDASCV---- 281
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF- 368
+ G K+ A KT+ SV + L +RL + ++ RI + + F
Sbjct: 282 --RPTGKPKTISVEDACKTI-SVHTDVTDKFRMLLKRLMEQVAEDGRIPIAIKVVLRKFD 338
Query: 369 ---KSSDSDSRKK------FPSKSCPLRYGTAKIQ 394
KSS ++++ F + C G K+Q
Sbjct: 339 PQKKSSHRETKQANILPSLFKASVCAGETGVCKVQ 373
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 159/361 (44%), Gaps = 81/361 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMR 69
+++I HVD+D FY VE P+L+G P V G G+++ Y+AR YGV+ M
Sbjct: 343 SQVIVHVDMDAFYANVELLHNPELKGKPFGV-------GAGVLSTASYDARKYGVRSGMP 395
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTD 128
G AK++CP++ LV + R Y+ +V+ I R A DE YL++T
Sbjct: 396 GFIAKKLCPELILVNINFTR-------YQEMSDKVMDIFRRYDPNMLAAGCDEGYLNITA 448
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
E +H AC
Sbjct: 449 YCE-----------------------------------------------EHNLDPQAC- 460
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLP 246
V E+R V KET T SAGIA NKMLAK+ S NKP Q +PF S+K + LP
Sbjct: 461 ---VQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYLPFDRESIKSFMQDLP 517
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLL--KFSEDKLQESYGFNTGTWLWNIARGISGEE 304
I+++ + G++ L + +G+ T GD+ + + + + +G +L I GI+
Sbjct: 518 IRRIPGV-GRVNERLLDAIGIKTCGDIYTHRATLSLMDKQFGLQ---FLLRIHLGIASNV 573
Query: 305 VQA--RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V+ R K + F R T++ Q LN+L EE++ L D E+N T+T
Sbjct: 574 VEPGKREERKIASAKVHF---RTFSTLSDRQQILNKL-EEVAAELEDDTERNGWTGKTVT 629
Query: 363 L 363
L
Sbjct: 630 L 630
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 156/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFALYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + + +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALFQDHKKLGKTIVL 299
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 152/354 (42%), Gaps = 73/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +GV+ +M
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVA----WRGMRSVVCAASYEARVFGVRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CP + + VP D + Y+ +V +I R + DL +
Sbjct: 58 ALRAERLCP--DAIFVP-----PDFARYKAVSRQVRAIFQR------------HTDLIE- 97
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE L + G + AT
Sbjct: 98 ---------PLSLDEA--------YLDVTVPKGGPAAATE-------------------- 120
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V+ L LP+ K
Sbjct: 121 -IAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHRVEAFLTPLPVNK 179
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G + + L LG+ TVGDL SE +L+ +G + G L+ ARGI V++
Sbjct: 180 VPGVGKVMQSKL-AALGIVTVGDLRDCSEAELEARFG-SFGLRLYQRARGIDERPVESDQ 237
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL+ L L+E+ + R+A T+ L
Sbjct: 238 PVQSISSEDTFAEDLALEA-------LEPAIRRLAEKTWDATRRTDRVARTVVL 284
>gi|23099313|ref|NP_692779.1| DNA polymerase IV [Oceanobacillus iheyensis HTE831]
gi|38372232|sp|Q8EQ56.1|DPO4_OCEIH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22777542|dbj|BAC13814.1| DNA damage inducible protein [Oceanobacillus iheyensis HTE831]
Length = 419
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 150/354 (42%), Gaps = 63/354 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RII H+D++CFY VE P L+G P A+ E + G ++ YEAR GVK +M
Sbjct: 10 RIIFHIDMNCFYASVEMAHNPSLKGKPLAIAGNPEERKGIIVTSSYEARGKGVKTTMPIW 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+AK++CP + L+ + + YR A E+ +LA + SIDE Y+D+TD
Sbjct: 70 QAKKLCPDLILM-------RPNFDRYRAASREIFKMLAEITPYVQPVSIDEGYMDITDTI 122
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
A +D L+
Sbjct: 123 YA------------------------------------------------KDPLVTAN-- 132
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+L+ ++L + CS GIA NK LAK+AS M KP T + V+ LL + +++M
Sbjct: 133 ---QLQQRILSGLDIPCSIGIAPNKFLAKMASDMKKPLGITVLRKREVEKLLWPMSVEEM 189
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K L N + + T+GDL K + +L++ G N G L N A GI V +
Sbjct: 190 YGIGEKTAQKL-NSIEIKTIGDLAKKNVYELKQLLGVN-GERLQNRANGIDNRLVDPEAV 247
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
G S P V + +++L + + R+ K + T+ H
Sbjct: 248 HDFKSIGSSQTLPHDSTDVTELMQLIHELVDNVERRVKRKEAAGKTVQITIRYH 301
>gi|414563270|ref|YP_006042231.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338846335|gb|AEJ24547.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 367
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPELKGKPVVIGKDPRESGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + D + YR G ++ I R + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFKRYTDQVEPVSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + TCSAG+++NK LAKLAS KP T V L+ LPI
Sbjct: 132 ALKIARLIQYDIWNSLHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKRTVERL-HEMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE---RLCSDLEQNKRIAHTLTL 363
+ KS S +++ A + + + ELS+ R+ LE NK++ + L
Sbjct: 250 NRIRKSISSERTY---------AKLLYQEADIKAELSKNASRVADLLEANKKLGRIIVL 299
>gi|288929132|ref|ZP_06422977.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
gi|288329234|gb|EFC67820.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
Length = 367
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 177/432 (40%), Gaps = 89/432 (20%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P R I H+D+D FY VEQR P LRG P + +E + G L YEAR YGV
Sbjct: 2 PAQDFNRKIIHIDMDAFYASVEQRDDPSLRGKPVGIG--SEDRRGVLCTASYEARKYGVH 59
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+M G +AK +CP EL+ +P D Y+ +V I R E S+DE YL
Sbjct: 60 SAMSGVQAKRLCP--ELIFLP-----PDFKKYKQVSQQVHEIFHRYTDLVEPLSLDEAYL 112
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T LG+E
Sbjct: 113 DVTQNK------------------------LGIE-------------------------- 122
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
V I +R ++ E T SAG++ NK LAK+AS KP T + S +D+
Sbjct: 123 --LAVDIAQRIRQEIRNELHLTASAGVSFNKFLAKVASDFRKPDGITVIHPSRAMHFIDN 180
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPI +G K ++ + +G+ DL + S +L++ +G G +N AR I
Sbjct: 181 LPITDFWGVGHKTAETM-HAMGIFNGADLRQLSRLRLRQVFG-KAGEMYYNFARAIDPRP 238
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
V+ + KS G ++F + TV + L +L EL ER L++N TLTL
Sbjct: 239 VEPHWIRKSVGCERTFDEDSSNPTVLLTE--LYRLVLELVER----LKKNDFKGRTLTL- 291
Query: 365 ASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 424
K D + S++ P + +ED + +A L E +YSG
Sbjct: 292 ----KVKFHDFTQITRSRTAP---HVLRKKEDILPIAKALLSEV-----------NYSGR 333
Query: 425 RITALSVSASKI 436
I L V S +
Sbjct: 334 PIRLLGVQVSNM 345
>gi|262037403|ref|ZP_06010867.1| DNA polymerase IV [Leptotrichia goodfellowii F0264]
gi|261748565|gb|EEY35940.1| DNA polymerase IV [Leptotrichia goodfellowii F0264]
Length = 353
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 180/405 (44%), Gaps = 98/405 (24%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
+I H D+D F+ VEQR P+L+G+P AV G G++ YEAR +GVK +M
Sbjct: 3 KIYLHYDMDAFFASVEQRDNPRLKGIPIAV-------GHGVVTTASYEARKFGVKSAMPT 55
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
AK++CP ++L +PV + + Y G E+ +++ + + E SIDE Y+D+T+
Sbjct: 56 VTAKKLCPHLKL--IPVRK-----NYYSAVGKEIQNLIKKFTDKYEFTSIDEGYIDITEF 108
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
K+ N +++++ R
Sbjct: 109 I-----------------------------KNNN-----IEKFIIR-------------- 120
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ + K T TCS GI +K+ AK+AS +NKP F S + ++ + K
Sbjct: 121 -----FKEYIFKNTGLTCSVGIGFSKISAKIASDINKP--NNYFIFESKEQFVEYIRDKN 173
Query: 250 MKQL--GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK L + ++ V +L K + +L +G N G +L+N+ RG+ E+
Sbjct: 174 LSIIPGIGKKTRELLSLFNISVVSELYKIEKKELTAKFGINRGEYLYNVIRGMQYSEIDT 233
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL---SERLCSDLEQNKRIAHTLTLH 364
+S+G +F S+ L +L +EL S++L L++NK A T+TL
Sbjct: 234 NRKRQSYGHEVTFG--------QSMNDIL-ELSDELKVQSKKLSKRLKENKEFAKTVTL- 283
Query: 365 ASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTF-NLFQAGLREF 408
+ ++ + + T KI D + ++F+A + F
Sbjct: 284 -----------KIRYSNFMTYTKAKTLKIATDEYKSIFEAAMESF 317
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 155/351 (44%), Gaps = 71/351 (20%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRGDEAKE 75
+D+D FY VEQR P+LRG P AV G G++A YEAR YGVK +M +A +
Sbjct: 1 MDMDAFYASVEQRDFPELRGKPLAV--GGSPDGRGVVATASYEARKYGVKSAMSSRQALQ 58
Query: 76 VCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAML 134
+CP + R + D+ Y+ ++ I R E S+DE YLD+T
Sbjct: 59 LCPDLIF-----TRPRFDI--YKEVSQQIRQIFLRYTDLIEPLSLDEAYLDVT------- 104
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTE 194
E K G + + I +
Sbjct: 105 -----------------------EDKQG----------------------IGSAIDIARQ 119
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
++ ++ +E T SAG++ NK +AK+AS +NKP T + S V ++ LPI+K +
Sbjct: 120 IKQEIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEHLPIEKFFGV- 178
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
GK+ S +LG+ D+ +++++ L +G TG + +NI RGI VQ KS
Sbjct: 179 GKVTASKMKKLGIYRGADMKQWTQEALTRHFG-KTGEFFYNIVRGIDNRPVQPNRQTKSI 237
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+F + +A +Q L + +ELS RL L + T+TL
Sbjct: 238 SVEDTFA-----QDIADIQ-VLEDILKELSVRLVKRLNAKELAGKTVTLKV 282
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 170/374 (45%), Gaps = 73/374 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VE P+L+G A+ G + A YEAR +GV+ ++ G
Sbjct: 8 RKIIHVDMDAFYASVEAMDNPELKG--KAIAVGGGGNRGVVSAASYEARKFGVRSAISGV 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A+ +CP + V K Y+ S++ RA ++ D TD E
Sbjct: 66 KARRLCPDLIFV-------KPRFDRYKEISSKI-----------RA----IFYDYTDLVE 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE +++ E+K GN S + LI
Sbjct: 104 -------PLSLDE-------AYLDVTENKKGNPSAS----------------------LI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V G L++L I+K
Sbjct: 128 AEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLGFLEALDIRKFY 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ + G+ T DL S + L++++G +G++ + I RGI EV+ +
Sbjct: 188 GI-GKVTAEKMYQKGIFTGTDLKSKSLEFLEQNFG-KSGSYYYYIVRGIHNSEVKPNRIR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS + ++F L + + L + EE+S+RL ++K T+TL K
Sbjct: 246 KSLAAERTF--SENLSSEIFMLEKLEHIAEEVSKRLI----RSKVAGKTVTL-----KIK 294
Query: 372 DSDSRKKFPSKSCP 385
SD + SK+ P
Sbjct: 295 YSDFTLQTRSKTLP 308
>gi|195330788|ref|XP_002032085.1| GM23708 [Drosophila sechellia]
gi|194121028|gb|EDW43071.1| GM23708 [Drosophila sechellia]
Length = 735
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 171/391 (43%), Gaps = 40/391 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR + Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E A V E L+ + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEALLRPPVGHTYPADGTPLST------CDCGCAQR---LAIGTR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 227 ITGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSSVRPSG 285
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 370 SSDSDSRKK------FPSKSCPLRYGTAKIQ 394
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|332798579|ref|YP_004460078.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|438001559|ref|YP_007271302.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|332696314|gb|AEE90771.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|432178353|emb|CCP25326.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
Length = 396
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 158/358 (44%), Gaps = 64/358 (17%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD++ FY Q K P L+G P V + + G ++ YEAR YGVK +M +A
Sbjct: 4 ILHVDMNAFYASCHQAKDPSLKGKPVMVAGDPKKRNGIILTASYEARRYGVKTAMPKWQA 63
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAAEA 132
+++CPQ + K D Y +V+SIL R + E SIDE +LD
Sbjct: 64 EKLCPQAVFI-------KPDYDLYLRTSQKVMSILGRFSPQIEIFSIDEAWLD------- 109
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
+ G E +L V I
Sbjct: 110 ---------------------VTGCE------------------------RLFGDSVAIA 124
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
+++ + KE + CS G++ NK+LAK+AS M KP T + V LL LP+ ++
Sbjct: 125 RKIQAAIAKELDLLCSIGVSCNKLLAKMASDMKKPNAITVLTTEDVPKLLWPLPVNELFG 184
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+G ++ L+ + + T+GDL + ++ L++++G N G++L A GI V +
Sbjct: 185 VGRRMAEKLK-RMNIKTIGDLAEAPQEFLEKAFGLN-GSYLHLWANGIDDSAVNPHSMDD 242
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
+ G S P+ + + + L L E++ R+ + + + T+TL ++F +
Sbjct: 243 AKSMGHSITLPKDITSFDDAEIVLLFLSEQVGRRVRRENYMGRTV--TVTLRYASFDT 298
>gi|418936247|ref|ZP_13489976.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
gi|375056985|gb|EHS53180.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
Length = 359
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 136/315 (43%), Gaps = 64/315 (20%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
DS+ R I HVD+D FY VEQR P LRG P AV G + A YEAR +GV
Sbjct: 2 DSAPVRKIIHVDMDAFYASVEQRDNPDLRGRPLAV--GGSAARGVVAAASYEARTFGVHS 59
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLD 125
+M A+ CP +L+ VP YR ++ I A E S+DE YLD
Sbjct: 60 AMPSVTARRKCP--DLIFVP-----PRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLD 112
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T+ + M E+ E
Sbjct: 113 VTENRKGM----------EIATE------------------------------------- 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++L
Sbjct: 126 -----IALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEAL 180
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P+KK +G ++ G+ T DL S LQ+ +G +G + + IARGI V
Sbjct: 181 PVKKFHGVGPATAERMKQH-GIETGLDLKSKSLAFLQQHFG-KSGPYFYGIARGIDERRV 238
Query: 306 QARLLPKSHGSGKSF 320
+ + KS G+ +F
Sbjct: 239 RPDRIRKSVGAEDTF 253
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 153/342 (44%), Gaps = 64/342 (18%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
PD+ R I HVD+D FY VEQ P+L+G P AV + A YEAR +GV+
Sbjct: 2 PDTFPIRKIIHVDMDAFYASVEQLDNPELQGKPLAVGGGGKRGVVA--AASYEARKFGVR 59
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M G A+ +CP L+ P YR +V RK ++ D
Sbjct: 60 SAMSGMLAQRLCPG--LIFAP-----TRFERYREISEQV-----RK----------IFFD 97
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
TD E P SLDE +++ E+K GN S +
Sbjct: 98 YTDLVE-------PLSLDE-------AYLDVTENKKGNPSAS------------------ 125
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
LI E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V L++L
Sbjct: 126 ----LIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNPEDVLPFLEAL 181
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I+K + GK+ +LG+ T DL + + L +G +G + +++ RG+ EV
Sbjct: 182 DIRKFHGV-GKVTAEKMYQLGIFTGTDLKSKTIEFLSTHFG-KSGGYYYHVVRGVHTSEV 239
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ + KS + ++F L + + L + EE+S RL
Sbjct: 240 KPNRIRKSLAAERTF--SENLSSEIFMLEKLQHIAEEVSRRL 279
>gi|291278892|ref|YP_003495727.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
gi|290753594|dbj|BAI79971.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
Length = 400
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 146/346 (42%), Gaps = 68/346 (19%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
+I +D+D F+ VEQ P LRG P AV+ E + YEAR YGVK M E
Sbjct: 1 MIMCIDMDAFFASVEQASNPLLRGKPVAVIGAKERTV--VTTASYEARKYGVKTGMSKFE 58
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDLTDAAE 131
A +CP+I LV + Y ++ + +L E S+DE +LDL+
Sbjct: 59 AMRLCPRIVLVV-------GNNRKYTYVSKQIYNFLLTITSDVEMYSVDEAFLDLSSV-- 109
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
PPE + + +KS I +SK G
Sbjct: 110 ----NLPPEDVAFM----IKSFI---KSKFG----------------------------- 129
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
TCS G+ NK++AK+ASG+NKP VP K +DS PI K+
Sbjct: 130 -------------ITCSIGVGSNKLIAKMASGINKPDGFCYVPREKNKDFIDSFPISKIW 176
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G +L +N LG+ + DL F D L E +G N G L+ +A G E V P
Sbjct: 177 GVGRRLAKRFEN-LGIFSTKDLRDFGVDSLVEMFGKN-GYKLYAMANGEYFEGVNTNEEP 234
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
G S P + + + +L QLCE +SER + KR+
Sbjct: 235 -VKSIGHSMTLPMDIFNMDELSPYLLQLCEMVSERARQNRVSGKRL 279
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 158/359 (44%), Gaps = 66/359 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P +G P V + +GG + YEAR +GV+ +M
Sbjct: 8 RKIIHIDMDAFYASVEQRDNPDYKGKPIIVGGLPQGRGGVVATASYEARRFGVRSAMPSK 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A+++CP V + ++Y+ ++ I R Y DL +
Sbjct: 68 KAQQLCPHAIFV-------RPRFAAYKEVSQKIREIFHR------------YTDLIE--- 105
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL-LACGVL 190
P SLDE D H DKL + +
Sbjct: 106 -------PLSLDE-----------------------------AYLDVTH-DKLEIGSAIE 128
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +++ + E T SAG++ NK +AK+AS +NKP T + S ++ ++SL ++K
Sbjct: 129 IAMQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPDGLTFIGPSKIESFMESLAVEKF 188
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ G++ + + T DL K +E++L +G G + + I RGI EVQ +
Sbjct: 189 HGI-GRVTAEKMKRMNLFTGADLKKLTEEQLLLHFG-KPGKFYYKIVRGIDDREVQPNRV 246
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS G+ +F P L + + L+++ + +++RL Q K TL + S FK
Sbjct: 247 TKSVGAEDTF--PYDLTDLEEMNVELDKIAKTVADRLQR--YQLKGRTLTLKIKYSDFK 301
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 146/337 (43%), Gaps = 64/337 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I HVD+D FY VEQ P L+G P AV E G + A YEAR YGV+ +M G
Sbjct: 4 VRKIIHVDMDAFYASVEQMDNPDLKGKPVAVGGNRER--GVVAAASYEARAYGVRSAMSG 61
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 130
A C ++ V+ R K +LS+ I E++ D TD
Sbjct: 62 KLAALKCSKLVFVKPRFDRYK-ELSN---------------------QIREIFYDYTDLV 99
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E P SLDE L + N+ AT L
Sbjct: 100 E-------PLSLDEA--------FLDVTENKVNNPSAT---------------------L 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K
Sbjct: 124 IAQEIRDRIKEEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLEKLPIEKF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ +G+ DL +FS L + +G +G +NI RGI EVQ +
Sbjct: 184 FGI-GKVTAEKMKSIGIHNGHDLKQFSLQYLTKKFG-KSGLHFFNIVRGIHLSEVQPNRI 241
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS + +F + L S + L ++ EEL R+
Sbjct: 242 RKSLSAENTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|291085833|ref|ZP_06354175.2| DNA polymerase IV [Citrobacter youngae ATCC 29220]
gi|291069981|gb|EFE08090.1| DNA polymerase IV [Citrobacter youngae ATCC 29220]
Length = 352
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 3 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 61
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A ++ +I +R E S+DE YLD+TD+A
Sbjct: 62 MALKLCPHLTLLP-----GRYD--AYKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDSA 114
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 115 H------------------------------------------CHGSA----------TL 122
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 IAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLRTLPLGKI 182
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T D+ K+ L + +G G LW ++GI +V L
Sbjct: 183 PGV-GKVSAAKLESMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDERDVNNDRL 240
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + W CE + ERL +LE+
Sbjct: 241 RKSVGVERTL--------AEDIHEWSE--CEAIIERLYPELERR 274
>gi|194746257|ref|XP_001955597.1| GF18848 [Drosophila ananassae]
gi|190628634|gb|EDV44158.1| GF18848 [Drosophila ananassae]
Length = 732
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 175/391 (44%), Gaps = 40/391 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R + H+D+D FY QVE+ + P LR + Q N ++ Y AR GV + M +
Sbjct: 15 RTVIHLDMDYFYAQVEEIRDPTLRTKALGIQQKNI-----VVTCNYVARARGVSKLMLIE 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ +CP + LV DL+ YR ++ +L E+ DE ++D+T
Sbjct: 70 EAQRLCPDLVLV------NGEDLAPYRQMSQKIFDLLLNYTPLVEKLGFDENFMDVTSLV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E A E ++ HI +DG A C C R LA G
Sbjct: 124 ELRQAHNA-----EAQQKPAVGHIY---PEDGTPLSA------CDCGCAQR---LAIGSR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGI++NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGISYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRDLGDLKR 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L E G++TV L + D +++ +GF T T L ++A G V+
Sbjct: 227 ITGIGQK-TQCLLLEAGMSTVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTGLVRPTG 285
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PK+ G S P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDSC-KPISVRT--DVEERFRMLLKRLVEQVSEDGRIPISIKVVLRKFDSQKK 342
Query: 370 SSDSDSRKK------FPSKSCPLRYGTAKIQ 394
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSVCPGETGVSKVQ 373
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 156/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKY 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>gi|283784106|ref|YP_003363971.1| DNA polymerase IV [Citrobacter rodentium ICC168]
gi|282947560|emb|CBG87113.1| DNA polymerase IV [Citrobacter rodentium ICC168]
Length = 351
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERR-GVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + I +R R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASEHIREIFSRYTSRIEPLSLDEAYLDVTDS- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+H G L
Sbjct: 113 ---------------------THCHG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS +NKP Q + V L +LP+ K+
Sbjct: 122 IAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPEDVSDFLRTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + E+G+ T GD+ + L + +G G + ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLEEMGLRTCGDVQQCDLALLLKRFG-KFGRIIRERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + HW CE + ERL +LE+
Sbjct: 240 RKSVGVERTM--------AEDIHHWPE--CEAIIERLYPELERR 273
>gi|270290971|ref|ZP_06197194.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
gi|270280367|gb|EFA26202.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
Length = 374
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 168/400 (42%), Gaps = 69/400 (17%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I HVD+D FY +E R P+ R P V + GG G++A Y AR GV +M
Sbjct: 14 SRKIIHVDMDAFYASIEMRDHPEFRTKPLVVARDPRKTGGHGVVATANYVARQSGVHSAM 73
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+A E+CPQ + + P D YR ++ + + E ++DE YLD+T
Sbjct: 74 PAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHVFHEFTDKIETVALDEAYLDVT 126
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D D++ ++
Sbjct: 127 D-----------------DKKGMQD----------------------------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L +PI
Sbjct: 135 AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPI 194
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ + +G K + +ELGV DLLK SE+ L +G G L+ RG V
Sbjct: 195 EQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAY 252
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ KS G +++ P L T V L+ + ++L++ + + K + L L S
Sbjct: 253 QRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSD 308
Query: 368 FKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 406
F++ + +R +F Y AK D F G+R
Sbjct: 309 FETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|320169035|gb|EFW45934.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 893
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 119/237 (50%), Gaps = 20/237 (8%)
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
LL I E+R VL + +F CSAGIA NKMLAKLAS +NKP +QTTV + L+
Sbjct: 460 LLWFAAQITLEIRNAVLNQLDFHCSAGIAENKMLAKLASSLNKPNKQTTVTSTGAIALMR 519
Query: 244 SLPIKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
SLP++K++ LGGKLG + LG + G++ F +L G +TG +++ RG
Sbjct: 520 SLPLRKIRGLGGKLGREVCKRLGDIELAGEVWSFPLSRLVSLLGSDTGPFVYAAVRGRDS 579
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V R KS + KSF ++T S+ WL L EL R+ +D KR+ TL
Sbjct: 580 SAVVPRSTTKSMLAAKSFSP--VVETYQSLLDWLRVLASELVLRMRAD----KRVPRTLK 633
Query: 363 LHASAFKSSDSDSRK-------KFPSKSCPL---RYGTAKIQEDTFNLFQAGLREFL 409
+ F + + R + S+SCPL R+ + + L + RE L
Sbjct: 634 VQ---FHRASPNGRANSHAWWLEGKSRSCPLPHDRFNAELLASTAYGLLPSDAREIL 687
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRK--QPKLRGLPTAVVQYNEWKGGGLIAVGYE 58
M + P R I H+DLD FY QVE+R+ P +P AV+Q+ G +IAV Y
Sbjct: 1 MSFSLPARPPCRAIMHLDLDAFYAQVEERRLGVPPGADVPFAVIQW-----GMIIAVNYA 55
Query: 59 ARNYGVKRSMRGDEAKEVCPQIELVQVPVARG-----------------KADLSSYRNAG 101
AR +GV R A + CP + V V G K L +YR+
Sbjct: 56 ARKHGVARFELIQNAWKKCPILRAVHVQTFTGDGTQPQGYYPNPRKATHKVSLDAYRDTS 115
Query: 102 SEVVSILAR--KGRCERASIDEVYLDLTDAA 130
+ + +L R ++AS+DE + DLT+ A
Sbjct: 116 ARIFDVLERATSAPIQKASVDEAFFDLTEIA 146
>gi|333031299|ref|ZP_08459360.1| DNA polymerase IV [Bacteroides coprosuis DSM 18011]
gi|332741896|gb|EGJ72378.1| DNA polymerase IV [Bacteroides coprosuis DSM 18011]
Length = 366
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 146/336 (43%), Gaps = 66/336 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P LRG P +V +E K G + A YEAR +GV+ +M
Sbjct: 6 RKIIHVDMDAFYASVEQRDNPDLRGKP--IVVGSEHKRGVVAAASYEARVFGVRSAMPSV 63
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 130
+AK++CP + V +S Y+ S++ I R C E S+DE +LD+T
Sbjct: 64 KAKKLCPNLVFVD-------GRMSVYKQVSSQIHEIFHRYTDCIEPLSLDEAFLDVT--- 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
++K G D V
Sbjct: 114 ---------------------------KNKVGYD----------------------LAVD 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E++ + +E SAG+++NK LAK+AS KP T+ S + + LPI+
Sbjct: 125 IAREIKQCIHEELNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPSQAQKFIKQLPIESF 184
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + +++G+ T DLL++S L +G G +N ARGI V+A +
Sbjct: 185 WGVGPVTAKKM-HKMGIHTGKDLLEWSLSGLIHDFG-KMGGLYYNFARGIDNRPVEAIRI 242
Query: 311 PKSHGSGKSFPG--PRALKTVASVQHWLNQLCEELS 344
KS G + R + + H N+L E +S
Sbjct: 243 RKSVGCETTLTKDITRQSSVIIELYHIANELVERVS 278
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 178/430 (41%), Gaps = 85/430 (19%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYG 63
P R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G
Sbjct: 4 PPVPAQRKIIHVDMDAFYASVEQRDAPSLRGRPVVVA----WRGARSVVCAASYEARKFG 59
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEV 122
V+ +M A+ +CP + V VP D Y+ +V I L E S+DE
Sbjct: 60 VRSAMPALRAERLCP--DAVFVP-----PDFVRYKAVSRQVREIMLEHTDLVEPLSLDEA 112
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T TP + G S V E
Sbjct: 113 YLDVT---------TP---------------------RTGLPSATAVAE----------- 131
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+R ++ ET T SAG+A NK LAK+AS NKP + V+ L
Sbjct: 132 -----------AIRAKIRAETGLTASAGVAPNKFLAKIASDWNKPDGLFVIRPQHVERFL 180
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LP++++ +G + L ELG+ TVG+L ++LQ+ +G + G L+ ARGI
Sbjct: 181 TPLPVERIPGVGKVMQGKL-AELGIATVGELRSRPLEELQQRFG-SFGAALYRRARGIDE 238
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT-- 360
V+ +S S +F G L+ L +L+E+ + + R HT
Sbjct: 239 RPVEPDQPVRSVSSEDTFAGDLPLEA-------LEPAIRQLAEKTWNASRRAGRDGHTVV 291
Query: 361 LTLHASAFKS-SDSDSRKKFPSK-------SCPLRYGTAKIQEDTFNLFQAGLREFLGSF 412
L L + F+ + S + ++ P+ +C LR + E + L GL F +
Sbjct: 292 LKLKTAQFRILTRSLTLERPPASAAELADLACALRERVSLPAETRYRLVGVGLSGFRDAD 351
Query: 413 GVKTQGSHYS 422
QG ++
Sbjct: 352 EAMPQGDLFA 361
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 144/334 (43%), Gaps = 63/334 (18%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R+ P L+G P AV + +G L YEAR +G+ +M +A
Sbjct: 7 IIHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGV-LTTCNYEARKFGLHSAMPTAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP L+ VPV +++ Y+ +++ I R Y D+ +
Sbjct: 66 IKKCP--NLILVPV-----NMTLYKQVSAQIHQIFQR------------YTDIIE----- 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D H K I
Sbjct: 102 -----PLSLDE-----------------------------AYLDVTHCQKCSGSATWIAQ 127
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E + T SAGIA K LAK+AS MNKP Q + + V + +LP+ K+ +
Sbjct: 128 EIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLPLNKIPGV 187
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ + ++G+ T D+ F + L +G G +W+ + GI EVQA KS
Sbjct: 188 -GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKS 245
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
G ++ + T+ LN L +EL RL
Sbjct: 246 VGVEQTL--IENIHTIEQASALLNNLYDELIRRL 277
>gi|417339507|ref|ZP_12121054.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357960280|gb|EHJ84177.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 356
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A +VCP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKVCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|361128232|gb|EHL00178.1| putative N-acetyltransferase eso1 [Glarea lozoyensis 74030]
Length = 298
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 135/290 (46%), Gaps = 34/290 (11%)
Query: 38 PTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVP----------- 86
P AV Q+ GLIA+ Y AR +G+ R + EAK+ CP I V
Sbjct: 11 PLAVQQWQ-----GLIAINYPARKFGLNRHVTITEAKKQCPNIICQHVATWKEGDAKWDY 65
Query: 87 -------VARGKADLSSYRNAGSEVVSIL-----ARKGRCERASIDEVYLDLTDAAEAML 134
+A K L YR +++ + A + E+AS+DEV++DL+ ++L
Sbjct: 66 HDDAFQNIATHKVSLDPYRLESRRILACIKETLPADLQKVEKASVDEVFMDLSAQVHSIL 125
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGNDSKA-----TVKEWLCRCDADHRDKLLACGV 189
E PE + + L L D +A E D D D + G
Sbjct: 126 LERYPEISGPAPYDD-PTEYLPLPPSTALDWQADALIDLDVEETEDDDPDWDDVAILIGS 184
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
IV +R V ++ ++TCS G+A NKMLAKL S KP QQT V +V+ L L K
Sbjct: 185 EIVRNVRAAVREKLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIVRNRAVQQFLSDLKFTK 244
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
++ LGGKLG + + V DLL ++L++ G +TGTW++ I RG
Sbjct: 245 IRGLGGKLGEQITSSFNTDNVKDLLPIPIEQLKQKLGDDTGTWVYQIIRG 294
>gi|119476993|ref|ZP_01617274.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
gi|119449800|gb|EAW31037.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
Length = 388
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 154/349 (44%), Gaps = 65/349 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H D DCF+V VE R P L G P AV + +G + YEAR YGV +M
Sbjct: 29 RKIIHCDADCFFVAVEMRDDPSLFGRPVAVGGSADRRGV-ISTCNYEARAYGVGSAMATA 87
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
A+ +CP + ++ ++ Y+ A S++ +I E S+DE Y+D+T +
Sbjct: 88 TARRLCPDLIVL-------SGNMEKYKLAASQMRTIFCEYSTLVEPLSLDEAYIDVTGS- 139
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
DA H L
Sbjct: 140 ----------------------------------------------DACH-----GSATL 148
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R +V + T SAG+A NK LAK+ S NKP +P + V + ++P+ ++
Sbjct: 149 IAEEIRQRVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDRL 208
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GDL FS +L E +G + G+ L++++RGI V+ +
Sbjct: 209 FGV-GKVTAERLHRMGIQTCGDLRAFSIFQLSERFG-SFGSRLYDLSRGIDDRAVKTGRI 266
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
KS +FP L + S L L ++L+ RL + +Q+K A+
Sbjct: 267 RKSLSVEHTFPSD--LSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAY 313
>gi|431896181|gb|ELK05597.1| DNA polymerase iota [Pteropus alecto]
Length = 681
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 141/306 (46%), Gaps = 32/306 (10%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
+DLDCFY QVE P+L+G P V Q+ ++ + AR GVK+ M +AKE
Sbjct: 1 MDLDCFYAQVEMISNPELKGKPLGV-QHKYL----VVTCNFFARELGVKQLMNVRDAKEK 55
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAAEAMLA 135
CPQ+ LV DL+ YR +V +L ER DE ++DLT+ E L
Sbjct: 56 CPQLVLV------NGEDLTRYREMSYKVTELLEEFSPLVERLGFDENFVDLTEMVEKRLQ 109
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
+ DE+ + HI +S + +D L G I E+
Sbjct: 110 QLHS---DEISALTVSGHIYNNQSINQHDILHI---------------RLLIGSQIAAEM 151
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLG 254
R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL +K+M +G
Sbjct: 152 REAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESTQDLIHSLNHLKEMPGIG 211
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
K L+ LG+++V DL FS L++ G + + ++ G V P+S
Sbjct: 212 YKTTKRLEG-LGISSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSF 270
Query: 315 GSGKSF 320
SF
Sbjct: 271 SEEDSF 276
>gi|56414559|ref|YP_151634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363489|ref|YP_002143126.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|81599398|sp|Q5PF76.1|DPO4_SALPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|56128816|gb|AAV78322.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197094966|emb|CAR60503.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 351
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHIDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGAISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|222153676|ref|YP_002562853.1| DNA polymerase IV [Streptococcus uberis 0140J]
gi|222114489|emb|CAR43359.1| DNA polymerase IV [Streptococcus uberis 0140J]
Length = 364
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 137/313 (43%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE R P L+G + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEMRDNPNLKGKAVVIAKDPRETGGRGVVSTCNYEARKFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFIS-------GNYEKYKEVGLEIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + +E TCSAG+++NK LAKLAS KP T + V+ L LPI
Sbjct: 132 AVKIAKMIQHDIWQEVHLTCSAGVSYNKFLAKLASDFQKPHGLTLILPDQVEDFLAELPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +ELGV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGTKSVEKL-HELGVYTGKDLLEIPEITLIDHFG-RFGFDLYRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRIRKSIGSERTY 262
>gi|55823560|ref|YP_142001.1| DNA polymerase IV [Streptococcus thermophilus CNRZ1066]
gi|81559009|sp|Q5LYC2.1|DPO4_STRT1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55739545|gb|AAV63186.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus
CNRZ1066]
Length = 367
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ QVE R P L+ P + GG G+++ YEAR YGV +M
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPVIIGNDPRKTGGRGVVSTCNYEARKYGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLT 127
EA E CP + + S YR G ++ I E SIDE YLD+T
Sbjct: 71 SSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LPI
Sbjct: 132 AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>gi|445382141|ref|ZP_21427208.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
gi|445394949|ref|ZP_21428942.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748710|gb|ELW73666.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748845|gb|ELW73795.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
Length = 367
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 138/314 (43%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPV-IIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T ++ LG++S
Sbjct: 123 T------------------------TNKLGIKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 191 IAKFHGVGKKSVERL-HDMDIYTGADLLKISEMTLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|359459403|ref|ZP_09247966.1| DNA polymerase IV [Acaryochloris sp. CCMEE 5410]
Length = 355
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 154/354 (43%), Gaps = 71/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQR P+LRG P V E +G + A YEAR YG+ +
Sbjct: 2 RKILHIDMDAFFASVEQRDNPRLRGKPVVVGGRPEQRGA-VAAASYEARKYGIFSATPSR 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A C + V YR ++ +I + R E S+DE YLD+T+
Sbjct: 61 VAATKCKDLIFV-------APRFEVYRQVSQQIRAIFHQFTDRVEPVSLDEAYLDVTE-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+KA V +
Sbjct: 112 ----------------------------------NKAQVDSAMA---------------- 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E++ +++ET T SAG++ NK LAK+ASG+ KP + V + + LPI+K
Sbjct: 122 IAREIKRLIVQETHLTASAGVSINKFLAKMASGLEKPNGLSLVAPDQAETFVQQLPIEKF 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + ++LG+ T +L ++SE L +G G + + IARGI V A +
Sbjct: 182 HGI-GKVTAAKMHQLGIQTGTELRQWSEPSLVRQFG-KVGHYYYGIARGIDQRPVVANRI 239
Query: 311 PKSHGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G+ +S FP L + L+ + ++ RL +N+R +TLTL
Sbjct: 240 RKSIGAERSFFPDISGLPV---LMEELDAIATQVHLRLA----ENQRSGYTLTL 286
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 161/378 (42%), Gaps = 73/378 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P L+G AV E +GG + YEAR +GV +M
Sbjct: 10 RKIIHIDMDSFYASVEQRDNPSLKGKAIAVGGSPEGRGGVVATASYEARKFGVHSAMPSK 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + V ++Y+ + I R + S+DE YLD+T+
Sbjct: 70 RALQLCPHLIFVY-------PRFAAYKEVSRHIREIFRRYTDLIQPLSLDEAYLDVTE-- 120
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL-LACGV 189
DKL + +
Sbjct: 121 ---------------------------------------------------DKLGIGSAI 129
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I E++ + E T SAG++ NK +AK+AS M+KP T + S ++ ++ LP++K
Sbjct: 130 DIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKPDGLTFIGPSKIERFIEQLPVEK 189
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ GK+ G+ DL K +E +L +G +G + + I RGI VQA
Sbjct: 190 FHGV-GKVTAEKMKIRGLHKGADLKKLTEGELVHLFG-KSGHFFYKIVRGIDHRPVQANQ 247
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS G+ +F L T + +LC +++ +C+ +EQ++ TLT+ K
Sbjct: 248 ETKSIGAEDTFSEDLELLTEMN-----EELC-KIAGTVCNRMEQHRLYGRTLTI---KIK 298
Query: 370 SSDSDSRKKFPSKSCPLR 387
SD + S S P+R
Sbjct: 299 FSDFKQITRSRSFSEPIR 316
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 155/356 (43%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I HVD+D F+ +E R P+L+G P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHVDMDAFFAAIEVRDNPELKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + Y+ G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GHYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G L+
Sbjct: 124 ------------------------------ENKLG----------------------LSS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLPI
Sbjct: 132 AVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEEAMGVLASLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++GV T DLL E L +++G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKTVERL-HDMGVYTGQDLLDVPEMVLIDTFG-RFGFDLYRKARGISNSPVKV 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G +++ + L V L LC +R+ + LE+N++ T+ L
Sbjct: 250 DRVRKSIGKERTY--RKLLYREEDVLKELTSLC----QRVAASLERNEKKGRTIVL 299
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 158/359 (44%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P LRG P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPILRGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR+ G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYDKYRSVGHQIRRIFRRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D + D K+ VK
Sbjct: 124 D--------------------------------NKLDIKSAVK----------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + +E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 135 ---IAKLIQHDIWQEVGLTCSAGVSYNKFLAKLASDFEKPRGLTLVLPQDALSFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+++K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQEHKKLGKTVVL 299
>gi|418018528|ref|ZP_12658084.1| DNA polymerase IV [Streptococcus salivarius M18]
gi|345527377|gb|EGX30688.1| DNA polymerase IV [Streptococcus salivarius M18]
Length = 369
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 137/314 (43%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ +N K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKP-VIIGHNPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T +++ +KS
Sbjct: 123 T-----------------INKLGIKS---------------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLGKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|251783287|ref|YP_002997592.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391919|dbj|BAH82378.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 365
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 157/356 (44%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPVLKGKLVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + YR+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D LG++S
Sbjct: 124 DNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 250 NRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|238759709|ref|ZP_04620868.1| DNA polymerase IV [Yersinia aldovae ATCC 35236]
gi|238702035|gb|EEP94593.1| DNA polymerase IV [Yersinia aldovae ATCC 35236]
Length = 352
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 146/346 (42%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YLD++D
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYLDVSDCT 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
LC A L
Sbjct: 114 ------------------------------------------LCSGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + + L LP+ K+
Sbjct: 122 IAREIRQTIYDELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQILPFLYELPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ ELG+ T GD+ +S+ +L + +G G LW + GI + L
Sbjct: 182 PGVGKVTAKRLQ-ELGLATCGDVQNYSQAELLKRFG-KFGRVLWERSHGIDERGISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L E+L +LE R
Sbjct: 240 RKSVGVEQTL--------AEDIHDW--ESCESLIEQLYVELETRLR 275
>gi|308048622|ref|YP_003912188.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
gi|307630812|gb|ADN75114.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
Length = 356
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 146/338 (43%), Gaps = 67/338 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMRG 70
R I HVD+DCF+ VE R P+ RG P AV + + G+IA YEAR +GV+ +M
Sbjct: 8 RKIIHVDMDCFFAAVEMRDNPEYRGRPLAVGGAADSR--GVIATCNYEARQFGVRSAMPS 65
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
EAK CP++ LV RG+ ++ Y+ ++ +I AR E S+DE YLD+TD
Sbjct: 66 SEAKRRCPELLLV-----RGR--MAVYKAVSEQIRAIFARYTDLIEPLSLDEAYLDVTDC 118
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+C+ A
Sbjct: 119 P------------------------------------------VCQGSA----------T 126
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R ++L ET T SAGIA NK LAK+AS NKP Q +P +LP++K
Sbjct: 127 LIAERIRAEILAETGLTASAGIAPNKFLAKIASDENKPNGQFVIPPGKTAEFAATLPLRK 186
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L + G+ D+L + ++L +G G L A+GI VQ
Sbjct: 187 IPGVGPKTAERLASH-GLQVGADVLTCTPEQLASWFG-KFGPVLHQRAQGIDPRPVQTHR 244
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G + R L + L L EL RL
Sbjct: 245 ERKSVGVETTL--ARDLTSAEGCFEILQGLLPELERRL 280
>gi|395231474|ref|ZP_10409763.1| DNA polymerase IV [Citrobacter sp. A1]
gi|421845641|ref|ZP_16278794.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424731297|ref|ZP_18159882.1| dna polymerase iv [Citrobacter sp. L17]
gi|394714777|gb|EJF20673.1| DNA polymerase IV [Citrobacter sp. A1]
gi|411773176|gb|EKS56747.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422894271|gb|EKU34085.1| dna polymerase iv [Citrobacter sp. L17]
gi|455646713|gb|EMF25740.1| DNA polymerase IV [Citrobacter freundii GTC 09479]
Length = 351
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 150/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ + +Y+ A ++ +I +R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRYE--AYKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDS- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+H G L
Sbjct: 113 ---------------------THCHG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFTELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLRTLPLGKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T D+ K+ L + +G G LW ++GI +V L
Sbjct: 182 PGV-GKVSAAKLEAMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDERDVNNDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + W CEE+ ERL +LE+
Sbjct: 240 RKSVGVERTL--------AEDIHEWAE--CEEIIERLYPELERR 273
>gi|168261272|ref|ZP_02683245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|205350046|gb|EDZ36677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
Length = 351
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQRCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|161504583|ref|YP_001571695.1| DNA polymerase IV [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189027678|sp|A9MNS1.1|DPO4_SALAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160865930|gb|ABX22553.1| hypothetical protein SARI_02697 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 351
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 149/343 (43%), Gaps = 73/343 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E +G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRECRGV-ISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A V I +R E S+DE +LD+TD
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
TP H G L
Sbjct: 112 ------TP--------------HCYG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 122 IAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 182 PGV-GKVSAAKLESMGLITCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
KS G ++ + W + CE + ERL +LE+
Sbjct: 240 RKSVGVERTL--------AEDIHEWSD--CEAIIERLYPELER 272
>gi|21230058|ref|NP_635975.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769949|ref|YP_244711.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|188993162|ref|YP_001905172.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. B100]
gi|24211642|sp|Q8PCW8.1|DPO4_XANCP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81304097|sp|Q4UQI2.1|DPO4_XANC8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21111581|gb|AAM39899.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575281|gb|AAY50691.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|167734922|emb|CAP53134.1| DNA polymerase IV [Xanthomonas campestris pv. campestris]
Length = 359
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + V VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 58 AVRAERLCP--DAVFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T E+ +
Sbjct: 111 AKTGMQLAT------EIAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L LP+
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKLAA-LGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ + L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDA-------LDPHIQRLAEKTWHATRRTERIGRTVVL 284
>gi|83647018|ref|YP_435453.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
gi|83635061|gb|ABC31028.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
Length = 356
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 149/336 (44%), Gaps = 63/336 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D D FY VE R P LR LP AV + K G + Y AR +GV+ +M
Sbjct: 2 RKIIHIDADSFYASVEIRDNPSLRHLPVAVGGSPD-KRGVIATCNYNARAFGVRSAMSSA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A +CP + V + YR+ ++ +I + D TD E
Sbjct: 61 KAVLLCPDLVFV-------RPRFEVYRSVSKDIHTI---------------FRDYTDLIE 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D ++ KA C+ A LI
Sbjct: 99 -------PLSLDEA-------------YLDVSECKA------CKGSA----------TLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R +V ++ T SAG+A NK LAK+AS NKP + VK + LP++K+
Sbjct: 123 AEEIRARVRQDLRLTVSAGVAPNKFLAKIASDWNKPDGIFVIRPQDVKDFIPQLPVRKIN 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ + LG+TT GDL + S+D L+ +G + G L+N++RG+ VQ +
Sbjct: 183 GV-GKVTAAKMEALGITTCGDLQRLSKDDLERHFG-SYGERLYNLSRGVDNRPVQTEWVR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS ++ L+ + ++ L EEL ER
Sbjct: 241 KSLSVEHTY--DHDLQNLDAILDSCEPLFEELLERF 274
>gi|406659771|ref|ZP_11067909.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
gi|405577880|gb|EKB52028.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
Length = 364
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 140/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPDLQGKPVVIAKDPRETGGRGVVSTCNYEARRFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP + + S Y+ G E+ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPHAVFIS-------GNYSKYKEVGLEIRQIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + +E TCSAG+++NK LAKLAS KP T V + L +LPI
Sbjct: 132 AMKIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYEKPHGLTLVLPEDAQNFLAALPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K +L N +GV DLL+ SE +L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVETL-NAMGVYKGADLLELSEMQLIDQFG-RFGYDLYRKARGISLSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 DRIRKSIGSERTY 262
>gi|417503427|ref|ZP_12173976.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353652129|gb|EHC94042.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 304
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 157/359 (43%), Gaps = 66/359 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P+LRG AV E +G A YEAR +GV+ +M
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKAIAVGGLPENRGVVATA-SYEARKFGVRSAMPSK 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP++ V P + Y+ +V I R E S+DE YLD+T+
Sbjct: 63 RAVQLCPELVFVAPP------RFAVYKAVSRQVREIFHRYTDLIEPLSLDEAYLDVTE-- 114
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D++ + S A G
Sbjct: 115 ---------------DKQQIGS---------------------------------AIG-- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +++ + E + T SAG++ NK +AK+AS MNKP T +P V+ ++SLP+ K
Sbjct: 125 IAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPDGLTFIPPDKVEAFMESLPVNKF 184
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ N L + T DL K +E +L +G G++ + I RGI V+
Sbjct: 185 HGV-GKVTAEKMNTLNLFTGADLKKLTEVELVRLFG-KPGSFYYKIVRGIDDRPVEPNRE 242
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS + +F L ++ L++L ++ RL + K I TL + S FK
Sbjct: 243 TKSISAEDTFLND--LDNPVEMKEQLDRLAAVVTNRLQQYELKGKTI--TLKIRYSDFK 297
>gi|158338583|ref|YP_001519760.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
gi|158308824|gb|ABW30441.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
Length = 355
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 152/354 (42%), Gaps = 71/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ VEQR P+LRG P V E +G + A YEAR YG+ +
Sbjct: 2 RKILHIDMDAFFASVEQRDNPRLRGKPVVVGGRPEQRGA-VAAASYEARKYGIFSATPSR 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A C + V YR ++ +I + E S+DE YLD+T
Sbjct: 61 VAATKCKDLIFV-------APRFEVYRQVSQQIRAIFHQFTDLVEPVSLDEAYLDVT--- 110
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E PE + +
Sbjct: 111 -----ENKPE--------------------------------------------INSAMA 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E++ + +ET T SAG++ NK LAK+ASG++KP + V + + LPI+K
Sbjct: 122 IAREIKGLIHQETHLTASAGVSINKFLAKMASGLDKPNGLSLVAPDQAEAFVQQLPIEKF 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + ++LG+ T +L ++SE L +G G + + IARGI V A +
Sbjct: 182 HGI-GKVTAAKMHQLGIQTGAELRQWSEPSLVRQFG-KVGHYYYGIARGIDERPVIANRI 239
Query: 311 PKSHGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G+ +S FP L + L+ + ++ RL +N+R HTLTL
Sbjct: 240 RKSIGAERSFFPDISGLPV---LMEELDAIAAQVHLRLA----ENQRSGHTLTL 286
>gi|340399531|ref|YP_004728556.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
gi|338743524|emb|CCB94034.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
Length = 368
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 138/314 (43%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKP-VIIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T + LG++S
Sbjct: 123 T------------------------INKLGVKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|195977472|ref|YP_002122716.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974177|gb|ACG61703.1| DNA polymerase IV DinB [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 367
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+L+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPELKGKPVVIGKDPRESGGRGVVSTCNYEARRFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + D + YR G ++ I R + E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFRRYTDQVEPVSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
S+ LG++S
Sbjct: 124 ------------------------SNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I ++ + TCSAG+++NK LAKLAS KP T V L+ LPI
Sbjct: 132 ALKIARLIQYDIWNSLHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L +E+G+ T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKRTVERL-HEMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE---RLCSDLEQNKRIAHTLTL 363
+ KS S +++ A + + + E+S+ R+ LE NK++ + L
Sbjct: 250 NRIRKSISSERTY---------AKLLYQEADIKAEISKNASRVADLLEANKKLGRIIVL 299
>gi|387784781|ref|YP_006070864.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
gi|338745663|emb|CCB96029.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
Length = 369
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 138/314 (43%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKP-VIIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T + LG++S
Sbjct: 123 T------------------------INKLGIKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|51595246|ref|YP_069437.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 32953]
gi|153950157|ref|YP_001402117.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
gi|170025513|ref|YP_001722018.1| DNA polymerase IV [Yersinia pseudotuberculosis YPIII]
gi|186894264|ref|YP_001871376.1| DNA polymerase IV [Yersinia pseudotuberculosis PB1/+]
gi|81640247|sp|Q66DZ7.1|DPO4_YERPS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044620|sp|A7FLI9.1|DPO4_YERP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51588528|emb|CAH20136.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Yersinia pseudotuberculosis IP 32953]
gi|152961652|gb|ABS49113.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
gi|169752047|gb|ACA69565.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
gi|186697290|gb|ACC87919.1| UMUC domain protein DNA-repair protein [Yersinia pseudotuberculosis
PB1/+]
Length = 352
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P+LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPRLRDIPLAIGGSKE-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ+ L+ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MAFKLCPQLTLL-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D +DS LACG
Sbjct: 108 ------------------------------DVSDS-------------------LACGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPFLQDLPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ +G LQ LG+ T G++ K+ +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGAVTAKRLQ-ALGLVTCGEIQKYPLAELLKHFG-KFGRVLWERSHGIDEREISP 236
Query: 308 RLLPKSHGSGKSF 320
L KS G K+
Sbjct: 237 DRLRKSVGVEKTL 249
>gi|357235923|ref|ZP_09123266.1| DNA polymerase IV [Streptococcus criceti HS-6]
gi|356883905|gb|EHI74105.1| DNA polymerase IV [Streptococcus criceti HS-6]
Length = 365
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 139/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+L G P + GG G+++ YEAR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPELVGKPVIIGADPRKTGGRGVVSTCNYEARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLT 127
EA E CP+ + D YR G ++ I R E SIDE YLD+T
Sbjct: 71 NSKEALERCPEAIFIS-------GDYQKYRQVGQQIREIFKRYTDLFEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + +++ + +E + TCSAG+++NK LAKLAS +KP T + + L LPI
Sbjct: 132 AVKLAKMIQLDIWQEVQLTCSAGVSYNKFLAKLASDYDKPHGLTLILPDEAEDFLKGLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K + GK +ELGV T DLL+ E L + +G G L+ ARGIS V+
Sbjct: 192 EKFYGV-GKQSVKRLHELGVYTGQDLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>gi|269121558|ref|YP_003309735.1| DNA-directed DNA polymerase [Sebaldella termitidis ATCC 33386]
gi|268615436|gb|ACZ09804.1| DNA-directed DNA polymerase [Sebaldella termitidis ATCC 33386]
Length = 356
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 152/340 (44%), Gaps = 79/340 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
R I H D+D FY +EQR PKL+G AV G G+I YEAR YGV+ +M
Sbjct: 8 RCILHYDMDAFYASIEQRDNPKLKGKAIAV-------GRGVITTASYEARKYGVRSAMPS 60
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDA 129
AK++CP EL+ +PV + Y+ G ++ ++ + +CE S DE Y+D+T+
Sbjct: 61 VTAKKLCP--ELILLPVR-----IDYYKKLGKKIQDLIQSLTYKCEFISSDEGYVDITE- 112
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ + PES E + +L H
Sbjct: 113 ---YMKKYTPESFIEKFKNSLYKH------------------------------------ 133
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
T TCS G+ +NK+ AKLAS NKP + SS + + + K
Sbjct: 134 -------------TRLTCSVGLGYNKLSAKLASDANKPNGYFII--SSREEFHNYVKDKS 178
Query: 250 MKQLGGKLGTSLQ--NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + G SL+ N +G+ TV D+ +++ L + +G N G ++ + RGI EV
Sbjct: 179 VSIIPGIGRKSLEPLNNMGINTVNDIFNLTKNNLIDMFGTNKGVRIFELVRGIDDSEVDY 238
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQ----HWLNQLCEEL 343
+S+G +++ R + + +V H +N+L E+L
Sbjct: 239 ISERQSYGQEETY--SRTVDDIETVHDTLLHQINKLTEKL 276
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDKGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPEAIFIS-------GNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 NNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|68469717|ref|XP_721110.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
gi|46443012|gb|EAL02297.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
Length = 640
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IA +DL+ F+ QVEQ + P Q+N +IAV Y +R +G+ R
Sbjct: 49 IALIDLNAFFAQVEQIRLNLTNQDPVVCAQWN-----SVIAVSYASRKFGITRMDTIASC 103
Query: 74 KEVCPQIELVQVPVARG-----------------KADLSSYRNAGSEVVSILARK-GRCE 115
K CP + + V + K L YR +++ ++ + E
Sbjct: 104 KSKCPNVIIAHAAVYKKGESHWAYVEGLPAINKHKVSLDPYRRESRKILRVIGKSFDLTE 163
Query: 116 RASIDEVYLDLTDAAEAMLAETPPE----SLDEVDEEAL---------------KSHILG 156
+AS+DE Y+DL L + P+ S D + + I+
Sbjct: 164 KASVDECYIDLGREIYKRLIDLFPQLSRGSRDNPENSYANLPLIPPALPLNLKWEGEIIN 223
Query: 157 LESKDGND----SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 212
E + D S +++W C G I+ E+R + +E +T SAG+A
Sbjct: 224 TEKEKSEDNDIVSPPVIEDWDDIC--------FIIGSQILLEVRKDIFEELGYTTSAGLA 275
Query: 213 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 272
K +AKLA+G KP QT + S++ L + + + +GGKLG S+ N++ V +
Sbjct: 276 RTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLGESIINKVNVPPQIN 335
Query: 273 LL-----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 327
+ FS+ ++E G G ++NI RGI+ E+Q+ + KS S K+F +
Sbjct: 336 SISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTIEVKSMTSTKNFTS-FVIS 394
Query: 328 TVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
+ WL +L RL +N ++ T
Sbjct: 395 NLFDAYDWLKVFAGDLHNRLIDLDNENMELSST 427
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 NNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|168465387|ref|ZP_02699269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|418763352|ref|ZP_13319476.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418766861|ref|ZP_13322933.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418772033|ref|ZP_13328039.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418774716|ref|ZP_13330677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781329|ref|ZP_13337214.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418784793|ref|ZP_13340630.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418804608|ref|ZP_13360212.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419789054|ref|ZP_14314737.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419794108|ref|ZP_14319724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195631947|gb|EDX50467.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|392616198|gb|EIW98633.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392616520|gb|EIW98953.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392733608|gb|EIZ90810.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392734596|gb|EIZ91778.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736872|gb|EIZ94034.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392748056|gb|EJA05047.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392749916|gb|EJA06892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392754324|gb|EJA11243.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392769637|gb|EJA26366.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 351
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|198245459|ref|YP_002214268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200390906|ref|ZP_03217517.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|207855798|ref|YP_002242449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375117745|ref|ZP_09762912.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|418845907|ref|ZP_13400684.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418860672|ref|ZP_13415247.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418864156|ref|ZP_13418691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|421357900|ref|ZP_15808208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365109|ref|ZP_15815331.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369118|ref|ZP_15819302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372564|ref|ZP_15822713.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376176|ref|ZP_15826285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380746|ref|ZP_15830808.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384111|ref|ZP_15834140.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421392611|ref|ZP_15842568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395871|ref|ZP_15845803.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398530|ref|ZP_15848435.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405287|ref|ZP_15855122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407887|ref|ZP_15857694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414038|ref|ZP_15863784.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421419576|ref|ZP_15869268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421423747|ref|ZP_15873398.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425500|ref|ZP_15875135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421429849|ref|ZP_15879443.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421437785|ref|ZP_15887299.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440875|ref|ZP_15890350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445723|ref|ZP_15895144.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421451323|ref|ZP_15900689.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436635994|ref|ZP_20515843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436793964|ref|ZP_20521938.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810464|ref|ZP_20529502.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436813788|ref|ZP_20531976.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831512|ref|ZP_20536180.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849648|ref|ZP_20540785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856061|ref|ZP_20545166.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436863047|ref|ZP_20549590.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436871522|ref|ZP_20554696.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436878673|ref|ZP_20559092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886788|ref|ZP_20563194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436894544|ref|ZP_20568022.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436904671|ref|ZP_20574688.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909852|ref|ZP_20576437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436918105|ref|ZP_20581276.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436925673|ref|ZP_20586105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436934146|ref|ZP_20590150.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436941426|ref|ZP_20594986.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949416|ref|ZP_20599430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436959531|ref|ZP_20603728.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975250|ref|ZP_20611526.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436987057|ref|ZP_20615701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436999594|ref|ZP_20620167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009914|ref|ZP_20623894.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437018290|ref|ZP_20626782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437035425|ref|ZP_20633351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046726|ref|ZP_20638542.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437049477|ref|ZP_20640097.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437056709|ref|ZP_20644077.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437065161|ref|ZP_20648846.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437079059|ref|ZP_20656553.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082082|ref|ZP_20658157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090106|ref|ZP_20662678.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437115035|ref|ZP_20669257.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122676|ref|ZP_20672518.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437132779|ref|ZP_20678229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437137886|ref|ZP_20680681.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437149199|ref|ZP_20688072.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151842|ref|ZP_20689513.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160794|ref|ZP_20694867.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169509|ref|ZP_20699829.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176703|ref|ZP_20703507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437188110|ref|ZP_20710114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437198466|ref|ZP_20711392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437259572|ref|ZP_20717092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437272583|ref|ZP_20724333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437276752|ref|ZP_20726566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437288221|ref|ZP_20730555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437309658|ref|ZP_20735586.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437329016|ref|ZP_20741106.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338654|ref|ZP_20743859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437381049|ref|ZP_20750293.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437413030|ref|ZP_20753452.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437456141|ref|ZP_20760260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437470138|ref|ZP_20765153.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437485143|ref|ZP_20769255.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437499181|ref|ZP_20773990.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437513661|ref|ZP_20777639.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437531189|ref|ZP_20780669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554615|ref|ZP_20784387.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437571560|ref|ZP_20788669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437586130|ref|ZP_20793217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602499|ref|ZP_20798506.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437625841|ref|ZP_20805694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437643106|ref|ZP_20808368.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664518|ref|ZP_20814321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437675779|ref|ZP_20816847.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437687951|ref|ZP_20819620.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710216|ref|ZP_20826321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437726256|ref|ZP_20830061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437754980|ref|ZP_20834157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437802361|ref|ZP_20838326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437907945|ref|ZP_20850084.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438076074|ref|ZP_20857333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090824|ref|ZP_20860653.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438105066|ref|ZP_20866132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438114592|ref|ZP_20870208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|445144062|ref|ZP_21386811.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445153608|ref|ZP_21391455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445163964|ref|ZP_21393996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445218195|ref|ZP_21402532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445219434|ref|ZP_21402735.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445298291|ref|ZP_21411325.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445329323|ref|ZP_21413381.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343659|ref|ZP_21417128.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445362434|ref|ZP_21424194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197939975|gb|ACH77308.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603351|gb|EDZ01897.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|206707601|emb|CAR31883.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|326622012|gb|EGE28357.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|392811909|gb|EJA67907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392826056|gb|EJA81789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392831417|gb|EJA87050.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|395980620|gb|EJH89843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395983413|gb|EJH92606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395990137|gb|EJH99269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|396000214|gb|EJI09229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396003403|gb|EJI12391.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396003795|gb|EJI12782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396008172|gb|EJI17107.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396010915|gb|EJI19826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020673|gb|EJI29514.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396024598|gb|EJI33384.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396029819|gb|EJI38555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396030320|gb|EJI39054.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396035716|gb|EJI44388.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396035795|gb|EJI44466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396037132|gb|EJI45783.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396048747|gb|EJI57291.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396056771|gb|EJI65244.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396057166|gb|EJI65638.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396064078|gb|EJI72466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396064158|gb|EJI72545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065814|gb|EJI74182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|434958517|gb|ELL52066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434962967|gb|ELL56109.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434964956|gb|ELL57919.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975296|gb|ELL67606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982469|gb|ELL74292.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434988225|gb|ELL79824.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991494|gb|ELL82982.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997574|gb|ELL88813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000737|gb|ELL91859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435007349|gb|ELL98202.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011320|gb|ELM02040.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017193|gb|ELM07701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435018358|gb|ELM08833.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435028225|gb|ELM18304.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435030837|gb|ELM20826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435040066|gb|ELM29835.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435041286|gb|ELM31028.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045257|gb|ELM34902.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435050201|gb|ELM39706.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435054114|gb|ELM43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054196|gb|ELM43631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435059638|gb|ELM48913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435060135|gb|ELM49405.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435066814|gb|ELM55885.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435074792|gb|ELM63615.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078196|gb|ELM66940.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435081882|gb|ELM70523.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435096227|gb|ELM84499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435097015|gb|ELM85277.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435099809|gb|ELM88000.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435101415|gb|ELM89569.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111250|gb|ELM99155.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435115124|gb|ELN02914.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435115281|gb|ELN03052.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435122326|gb|ELN09848.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435123502|gb|ELN10995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435131008|gb|ELN18236.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435134520|gb|ELN21648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435143315|gb|ELN30181.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146307|gb|ELN33100.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148368|gb|ELN35095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435155428|gb|ELN41972.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435156030|gb|ELN42532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435164960|gb|ELN51020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167915|gb|ELN53768.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435173593|gb|ELN59090.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435183621|gb|ELN68582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435185148|gb|ELN70036.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435190547|gb|ELN75129.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435196045|gb|ELN80401.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435203065|gb|ELN86851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435203148|gb|ELN86932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435206848|gb|ELN90340.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435215023|gb|ELN97771.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435216318|gb|ELN98793.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435222316|gb|ELO04432.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435224104|gb|ELO06088.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435230298|gb|ELO11632.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243491|gb|ELO23748.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435243913|gb|ELO24167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435248013|gb|ELO27934.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435252608|gb|ELO32136.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435260187|gb|ELO39400.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435260401|gb|ELO39600.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435265646|gb|ELO44451.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435275141|gb|ELO53228.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435277393|gb|ELO55346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282999|gb|ELO60595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435288989|gb|ELO65979.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435292206|gb|ELO68995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435303719|gb|ELO79558.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435310147|gb|ELO84686.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435310911|gb|ELO85232.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435316161|gb|ELO89352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435318755|gb|ELO91664.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435321675|gb|ELO94066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435328991|gb|ELP00449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444847202|gb|ELX72352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444852267|gb|ELX77348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444856698|gb|ELX81724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444867633|gb|ELX92311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444870975|gb|ELX95430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444879083|gb|ELY03191.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444881463|gb|ELY05507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882093|gb|ELY06085.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|444884113|gb|ELY07957.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 351
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 156/356 (43%), Gaps = 68/356 (19%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+D FY VEQ P LRG A+ + G + A YEAR YGV+ +M G A
Sbjct: 9 IIHVDMDAFYASVEQLDNPDLRG--KAIAVGGGGERGVVSAASYEARKYGVRSAMAGALA 66
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
+++CP + V K + YR +++ S+ E S+DE YLD+T
Sbjct: 67 RKLCPDLIFV-------KTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVT----- 114
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
E+K G S + W+
Sbjct: 115 -------------------------ENKVGMPSATVIASWI------------------- 130
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
R ++ ++T SAGI+ NK +AK+AS +NKP Q T+P V L+ L I+K
Sbjct: 131 ---RQRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIRKFYG 187
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+G K + G+ T D+ S++ L +++G +G + ++I RGI EV+ + K
Sbjct: 188 IGKKTAEKMYLH-GIFTGMDMKMKSKEYLSDNFG-KSGAYYYDIVRGIQYSEVRPNRIRK 245
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
S + ++F + + + L+ + EE+ +RL K I TL + S F
Sbjct: 246 SLAAERTF--SENITSEIFMLEKLDIIAEEVEKRLAKSQVAGKTI--TLKIKYSDF 297
>gi|419146340|ref|ZP_13691037.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|421680998|ref|ZP_16120832.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
gi|378002027|gb|EHV65082.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|404342029|gb|EJZ68427.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
Length = 343
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 145/337 (43%), Gaps = 73/337 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++CP
Sbjct: 1 MDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLCP 59
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAET 137
+ L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 HLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------ 106
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
C A LI E+R
Sbjct: 107 ------------------------------------CHGSA----------TLIAQEIRQ 120
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 121 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKV 179
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 SAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVE 238
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 RTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|194442660|ref|YP_002039555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|238913297|ref|ZP_04657134.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|418807468|ref|ZP_13363026.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418812007|ref|ZP_13367531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418815365|ref|ZP_13370866.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821453|ref|ZP_13376878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418831645|ref|ZP_13386595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835646|ref|ZP_13390537.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418838629|ref|ZP_13393471.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418848833|ref|ZP_13403568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854945|ref|ZP_13409608.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|194401323|gb|ACF61545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|392776747|gb|EJA33433.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392778731|gb|EJA35402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392791048|gb|EJA47541.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392791817|gb|EJA48285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392798542|gb|EJA54813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392802921|gb|EJA59122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392814455|gb|EJA70406.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392822180|gb|EJA77992.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823119|gb|EJA78922.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
Length = 351
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 NNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|417826337|ref|ZP_12472917.1| impB/mucB/samB family protein [Shigella flexneri J1713]
gi|335578251|gb|EGM63476.1| impB/mucB/samB family protein [Shigella flexneri J1713]
Length = 343
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 146/337 (43%), Gaps = 73/337 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++CP
Sbjct: 1 MDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLCP 59
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAET 137
+ L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 HLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------ 106
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
C A LI E+R
Sbjct: 107 ------------------------------------CHGSA----------TLIAQEIRQ 120
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 121 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKV 179
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 SAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVE 238
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 RTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|253689653|ref|YP_003018843.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756231|gb|ACT14307.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 352
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 169/412 (41%), Gaps = 77/412 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ G+ D+ Y++ ++ I AR E S+DE YLD+TD+
Sbjct: 61 TALRLCPHLTLLP-----GRMDV--YKSTSRQIRDIFARYTSLIEPLSLDEAYLDVTDSP 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
N S + E
Sbjct: 114 HC------------------------------NGSATRIAE------------------- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R + E T SAGIA K LAK+AS +NKP Q + V L SLP++K+
Sbjct: 125 ---EIRRTIADELNLTASAGIAPIKFLAKIASELNKPNGQYVITPEQVDDFLLSLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ ++ L + +G G LW +GI + L
Sbjct: 182 PGVGKVTAKRLE-ERGLHTCADVRVYALADLLKEFG-KFGRVLWERCQGIDERRISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
KS G K+ + + + +H + QL +EL RL KR+ L + K
Sbjct: 240 RKSVGVEKTL--AQDIHSWGQCEHLIEQLYQELEVRL-------KRVKPDLHIARQGVKL 290
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ ++D L Q +E S GV+ G H +
Sbjct: 291 KFDDFQQTTQEHVWPMLN-----KQDLLKLAQQTWQERRKSRGVRLVGLHVT 337
>gi|416568092|ref|ZP_11764531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363578194|gb|EHL62010.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 351
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|241951166|ref|XP_002418305.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
gi|223641644|emb|CAX43605.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
Length = 642
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 168/396 (42%), Gaps = 62/396 (15%)
Query: 13 IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDE 72
+IA +DL+ F+ QVEQ + P Q+N +IAV Y R +G+ R
Sbjct: 48 VIALIDLNAFFAQVEQIRLNLTDQDPVVCAQWN-----SVIAVSYACRKFGITRMDSIAS 102
Query: 73 AKEVCPQIELVQVPVARG-----------------KADLSSYRNAGSEVVSILARK-GRC 114
K CP + + V + K L YR +++ I+++
Sbjct: 103 CKSKCPNVIIAHAAVYKKGESHWAYIEGLPTINNHKVSLDPYRRESRKILRIISKSFDLT 162
Query: 115 ERASIDEVYLDLTDAAEAMLAETPPE----SLDEVDE----EALKSHILGLESK------ 160
E+AS+DE Y+DL L + P+ S D + L IL L+ K
Sbjct: 163 EKASVDECYIDLGREIYKRLIDLFPQLSRSSRDNPENGYANLPLIPSILPLDLKWEGEII 222
Query: 161 ---------DGNDSKA--TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSA 209
+GN S +++W D G I+ E+R + E +T SA
Sbjct: 223 NSEKEKTMDNGNSSPPPPVIEDW--------DDICFIIGSQILLEVRKDIFAELGYTTSA 274
Query: 210 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT 269
G+A K +AKLA+G KP QT + S++ L + + + +GGKLG S+ N++ V
Sbjct: 275 GLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLGESIINKINVPP 334
Query: 270 VGDLL-----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 324
+ + FS D ++E G G ++NI RG + E+Q+ + KS S K+F
Sbjct: 335 QINSISFIRENFSIDSIKEKLGGELGLKVYNICRGTNAIELQSLIEVKSMTSTKNFTS-F 393
Query: 325 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
++ + WL +L RL +N ++ T
Sbjct: 394 SVNNLFDAYDWLKVFAGDLHNRLIDLDNENIELSST 429
>gi|238793960|ref|ZP_04637579.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
gi|238726727|gb|EEQ18262.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
Length = 352
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 147/346 (42%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D +D A C A L
Sbjct: 108 ------------------------------DVSDCTA------CSGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+ K+
Sbjct: 122 IAQEIRQAIFDELSLTASAGIAPIKFLAKIASDLNKPNGQYVITPNQIQPFLHDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ ELG+ T GD+ + + +L + +G G LW + GI E+ L
Sbjct: 182 PGVGKVTAKRLQ-ELGLVTCGDVQNYPQAELLKRFG-KFGHVLWERSHGIDEREISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L ++L +LE R
Sbjct: 240 RKSVGVERTL--------AEDIHDW--ESCEALIDQLYIELETRLR 275
>gi|417363626|ref|ZP_12136788.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417404428|ref|ZP_12157699.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353599778|gb|EHC55865.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353628510|gb|EHC76549.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 356
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|383188934|ref|YP_005199062.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371587192|gb|AEX50922.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 364
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 166/413 (40%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR +GV +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARKFGVHSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP ++++ + +Y+ A + + I AR E S+DE YLD++D+
Sbjct: 61 MALKLCPHLKVI-------PGRMEAYKEASNHIREIFARYTSLIEPLSLDEAYLDVSDSP 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ C+ L
Sbjct: 114 Q--------------------------------------------CNGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAAEIRQAIFDEIALTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFLQDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ E G+ T GD+ ++ KL + +G G LW +GI E+ + L
Sbjct: 182 PGVGKVTAQRLQ-EQGLFTCGDVQRYDLAKLLKRFG-KFGRVLWERCQGIDEREISSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAFK 369
KS G ++ + W + C L ERL +L R++ L + K
Sbjct: 240 RKSVGVERTL--------AEDIHGW--EECVALIERLYPELHTRLSRVSPDLRIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ +ED + + + G GV+ G H +
Sbjct: 290 LKFHDFQQTTQEHVWPVLN-----KEDLLKVAREAWEKRRGGRGVRLVGLHVT 337
>gi|225681089|gb|EEH19373.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb03]
Length = 1161
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 51/349 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD D F+ V RK P+L P A+ + G + + Y AR++G+K M
Sbjct: 366 RYIMHVDFDSFFAAVSIRKHPELADQPVAIA-HGTGPGSEIASCNYPARSFGIKNGMWMK 424
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDLTDAA 130
A ++CP ++++ D ++Y A ILA G + SIDE +D+T+
Sbjct: 425 GALQMCPNLKVLPY-------DFAAYEEASRNFYEVILAIDGIVQSVSIDEALVDITNIC 477
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
LD A S +G+ S+ ++ + D
Sbjct: 478 -----------LD-----AGGSDGIGI-------SEGSIYREQAKADE------------ 502
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +LR V ++T S GI N + A++A KPA Q + +V+ + L +K +
Sbjct: 503 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDL 562
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++
Sbjct: 563 PGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVP 621
Query: 311 PKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 357
KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 622 RKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|82751548|ref|YP_417289.1| DNA polymerase IV [Staphylococcus aureus RF122]
gi|123548109|sp|Q2YU32.1|DPO4_STAAB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|82657079|emb|CAI81516.1| DNA polymerase IV [Staphylococcus aureus RF122]
Length = 328
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|421453095|ref|ZP_15902451.1| DNA polymerase IV [Streptococcus salivarius K12]
gi|400181404|gb|EJO15671.1| DNA polymerase IV [Streptococcus salivarius K12]
Length = 369
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 138/314 (43%), Gaps = 66/314 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D F+ QVE R P L+ P ++ ++ K GG V YEAR YGV +
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKP-VIIGHDPRKTGGRGVVSTCNYEARKYGVHSA 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 126
M EA E CP + + S YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEAYLDV 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T + LG++S
Sbjct: 123 T------------------------INKLGIKS--------------------------- 131
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLP 190
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K +G K L +++ + T DLLK E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDCFG-RFGFDLFRKARGISNSPVR 248
Query: 307 ARLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>gi|422022011|ref|ZP_16368520.1| DNA polymerase IV [Providencia sneebia DSM 19967]
gi|414097761|gb|EKT59414.1| DNA polymerase IV [Providencia sneebia DSM 19967]
Length = 351
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 149/354 (42%), Gaps = 78/354 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P LR +P AV + +G + YEAR YGV +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPSLRNIPIAVGGSADHRGV-ISTANYEARRYGVHSAMSTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP ++++ ++ Y+ + I +R E S+DE YLD++D+
Sbjct: 61 IALRLCPTLKVI-------PGRMALYKETSLHIRQIFSRYTDLIEPLSLDEAYLDVSDS- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D + AT L
Sbjct: 113 ------------------------------DDHHGSAT---------------------L 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R Q+ KE + T SAG+A K LAK+AS MNKP Q + ++ + +LP+KK+
Sbjct: 122 IAQAIRQQIFKELQLTASAGVAPIKFLAKIASDMNKPNGQYVITPQNMDEFVRTLPLKKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L ++G+ T D+ + L +S G G LW I + L
Sbjct: 182 PGVGKVTAQKLL-DMGLATCSDVQHYDVVNLIKSMG-KFGQILWERCHAIDERPINPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 358
KS G ++ V + HW L++L +EL RL + + N+RIA
Sbjct: 240 RKSVGVERTL--------VQDIHHWEDCIPLLDKLYDELEVRL-TKISPNRRIA 284
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T V + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVVDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|383759505|ref|YP_005438490.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
gi|381380174|dbj|BAL96991.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
Length = 432
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 154/371 (41%), Gaps = 73/371 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAV------------------VQYNEWKGGGLI 53
R IAH+D+D FY VE + P+LRG P V + G G++
Sbjct: 6 RWIAHLDMDAFYASVEMLRYPELRGQPVVVGGGRRHQPETLPDGSRKFATLAGYAGRGVV 65
Query: 54 AVG-YEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG 112
Y AR+YGV M +A + CPQ L+ + ++ A +E+ ++ +G
Sbjct: 66 TTATYAARDYGVHSGMGLMKAAQRCPQAVLLPTDFDEYRRYSRLFKAAVAEIAPVIEDRG 125
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 172
IDE+Y+DLT+ + G + G+D V+
Sbjct: 126 ------IDEIYIDLTE-------------------------VPGAQDAVGHDPAGGVRA- 153
Query: 173 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
+ E+R V + T CS G+ NK+LAK+AS ++KP +
Sbjct: 154 ------------------VAQEIRNNVRRTTGLVCSIGVTPNKLLAKIASELDKPDGLSV 195
Query: 233 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 292
V + + + LP++++ +G K G L LGV T+GDL LQE +G + G W
Sbjct: 196 VTAAELPTRIWPLPVRRINGIGPKAGARLA-ALGVATIGDLAMRERAWLQEHFGRSYGAW 254
Query: 293 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 352
L A G V P S +F R L V + L + L+ER+ +DL+
Sbjct: 255 LHEAAHGQDDRPVVTHSEPVSVSRETTF--ERDLHAVQD-RAQLTAVFTHLAERVAADLQ 311
Query: 353 QNKRIAHTLTL 363
+ A T+ +
Sbjct: 312 RKGYAARTIGI 322
>gi|386309576|ref|YP_006005632.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|418241392|ref|ZP_12867921.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550652|ref|ZP_20506696.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
gi|318604550|emb|CBY26048.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|351779193|gb|EHB21311.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789787|emb|CCO69736.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
Length = 352
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 146/346 (42%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D +D +A C L
Sbjct: 108 ------------------------------DVSDCQA--------CSGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAQEIRQAIVIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV L
Sbjct: 182 PGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L E+L +LE R
Sbjct: 240 RKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|299537820|ref|ZP_07051109.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|424735572|ref|ZP_18164035.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
gi|298726799|gb|EFI67385.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|422950229|gb|EKU44598.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
Length = 412
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 144/337 (42%), Gaps = 63/337 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD++ FY VEQ P L+G P A+ + + G L+ YEAR G+ +M
Sbjct: 6 RVILHVDMNSFYASVEQAHDPSLKGKPIAIAGNPKERRGILVTCSYEARALGIYTTMTVH 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
EAK CP EL+ +P D YR+A E+ +IL + E SIDE YLD+T+ +
Sbjct: 66 EAKRKCP--ELLLLP-----PDFQKYRHASKEMFTILRSYTPLVEPVSIDEGYLDVTELS 118
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ + H L + +
Sbjct: 119 K-------------------ERHALSIAQE------------------------------ 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
++ ++L E + CS GIA NK LAK AS M KP T + ++ L + M
Sbjct: 130 ----IQARILAELDLPCSIGIAPNKFLAKTASDMKKPMGITVLRIRDIEQQLWHREVVNM 185
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L N G+ T+GDL K E K+++ G N G L A G+ V +
Sbjct: 186 HGIGASTAKKL-NAQGIFTIGDLAKTEEFKMKQILGKN-GVRLRARANGVDQRMVDPEAI 243
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ G S P + V ++ + LC+++ ERL
Sbjct: 244 FDTKSVGNSTTLPEDVTDVRTLHKTIEGLCKKVVERL 280
>gi|255034132|ref|YP_003084753.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
gi|254946888|gb|ACT91588.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 159/365 (43%), Gaps = 77/365 (21%)
Query: 2 PVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEAR 60
P+ +P R I H+D+D FY VEQR P+ RG P AV G G++A YEAR
Sbjct: 5 PIPKP----IRKIIHIDMDAFYASVEQRDFPEYRGKPLAVG--GSPTGRGVVATASYEAR 58
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASI 119
+GV+ +M +A ++CPQI V Y++ + I +R E S+
Sbjct: 59 KFGVRSAMPSRQAIQLCPQIIFVH-------PRFEVYKSVSRSIREIFSRYTDLIEPLSL 111
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE YLD+T+
Sbjct: 112 DEAYLDVTE--------------------------------------------------- 120
Query: 180 HRDKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 238
DK+ + + I +++ + +E T SAG++ NK +AK+AS ++KP T + S +
Sbjct: 121 --DKMGIGSAMEIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIGPSKI 178
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
+ +D LP++K + GK+ + + T DL K +E++L +G TG + + I R
Sbjct: 179 ERFMDQLPVEKFHGV-GKVTADKMKGMQLFTGSDLKKLTEEELVNHFG-KTGHFYYRIVR 236
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
GI EVQ KS G+ +F L T + L+++ ++ R LE K
Sbjct: 237 GIDDREVQTHRETKSLGAEDTF--TYDLTTPDEMNKELDRIGVTVANR----LETKKLKG 290
Query: 359 HTLTL 363
T+TL
Sbjct: 291 RTVTL 295
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 143/316 (45%), Gaps = 75/316 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYGVK 65
R I H+D+D F+ QVE R PKL+G P V GG G+++ YEAR YGV
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIV-------GGKASSRGVVSTASYEARKYGVY 56
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYL 124
+M +A ++CP V ++ +YR ++++SI + + E S+DE YL
Sbjct: 57 SAMPMSQAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL 109
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D E + + P
Sbjct: 110 ---DITELVRPDLPASK------------------------------------------- 123
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +
Sbjct: 124 ------IAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMT 177
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
L I + + GK + ++ G+ DL + +E +L +G G L+N ARGI E
Sbjct: 178 LDIGEFPGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSE 235
Query: 305 VQARLLPKSHGSGKSF 320
V++ + KS G+ ++F
Sbjct: 236 VKSSRVRKSVGTERTF 251
>gi|332527775|ref|ZP_08403814.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
gi|332112171|gb|EGJ12147.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
Length = 432
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 156/371 (42%), Gaps = 73/371 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAV------------------VQYNEWKGGGLI 53
R IAH+D+D FY VE + P+LRG P V + G G++
Sbjct: 6 RWIAHLDMDAFYASVEMLRYPELRGQPVVVGGGRRHQPELLADGSRRFATLAGYAGRGVV 65
Query: 54 AVG-YEARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG 112
Y AR+YGV M +A CPQ L+ + ++ A +E+ ++ +G
Sbjct: 66 TTATYAARDYGVHSGMGLMKAALRCPQAVLLPTDFDEYRRYSRRFKAAVAEIAPVIEDRG 125
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 172
IDE+Y+DLT E P G + G+D V+
Sbjct: 126 ------IDEIYIDLT--------EVP-----------------GAQDAVGHDPAGGVRA- 153
Query: 173 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232
+ E+R V + T +CS G+ NK+LAK+AS ++KP +
Sbjct: 154 ------------------VAQEIRNNVRRTTGLSCSIGVTPNKLLAKIASELDKPDGLSV 195
Query: 233 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 292
V + + + LP++++ +G K G L LGV T+GDL LQE +G + G W
Sbjct: 196 VTAAELPTRIWPLPVRRINGIGPKAGAKLA-ALGVATIGDLATRERAWLQEHFGRSYGAW 254
Query: 293 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 352
L + A G V P S +F R L V + L + +L+ER+ +DL+
Sbjct: 255 LHDAAHGQDDRPVVTHSEPVSVSRETTF--ERDLHAVQD-RARLTAVFTDLAERVAADLQ 311
Query: 353 QNKRIAHTLTL 363
+ A T+ +
Sbjct: 312 RKGYAARTIGI 322
>gi|424100583|ref|ZP_17835780.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|424566835|ref|ZP_18007788.1| DNA polymerase IV [Escherichia coli EC4448]
gi|425370440|ref|ZP_18755434.1| DNA polymerase IV [Escherichia coli EC1864]
gi|390674241|gb|EIN50443.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|390916441|gb|EIP74899.1| DNA polymerase IV [Escherichia coli EC4448]
gi|408301573|gb|EKJ19162.1| DNA polymerase IV [Escherichia coli EC1864]
Length = 343
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 145/337 (43%), Gaps = 73/337 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++CP
Sbjct: 1 MDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLCP 59
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAET 137
+ L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 HLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------ 106
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
C A LI E+R
Sbjct: 107 ------------------------------------CHGSA----------TLIAQEIRQ 120
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 121 TIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKV 179
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 SAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVE 238
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 RTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|384531775|ref|YP_005717379.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
gi|333813951|gb|AEG06619.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
Length = 369
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 138/318 (43%), Gaps = 66/318 (20%)
Query: 6 PDSSGARI--IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
P S G R+ I H+D+D FY VEQR P+LRG P A V Y E + G + A YEAR +G
Sbjct: 9 PPSPGGRVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPEAR-GVVAAASYEARKFG 66
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 122
V +M AK CP EL+ VP YR ++ +I A E S+DE
Sbjct: 67 VHSAMPSVTAKRKCP--ELIFVP-----HRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEA 119
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T+ + T E+ EE
Sbjct: 120 YLDVTENFRGLKLAT------EIAEE---------------------------------- 139
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+R ++ ET T SAGI++NK LAK+AS KP + +
Sbjct: 140 ------------IRGRIRAETHLTASAGISYNKFLAKMASDQRKPDGLFVITPKHGPDFV 187
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+LP+KK +G ++ LG+ T DL LQ+ +G +G + + IARGI
Sbjct: 188 QALPVKKFHGVGPATAEKMKR-LGIETGADLKSRDLAFLQQHFG-KSGPYFYWIARGIDE 245
Query: 303 EEVQARLLPKSHGSGKSF 320
EV+ + KS G+ +F
Sbjct: 246 REVKPDRIRKSIGAEDTF 263
>gi|68469958|ref|XP_720989.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|46442884|gb|EAL02170.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|238882146|gb|EEQ45784.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 640
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
IA +DL+ F+ QVEQ + P Q+N +IAV Y +R +G+ R
Sbjct: 49 IALIDLNAFFAQVEQIRLNLTDQDPVVCAQWN-----SVIAVSYASRKFGITRMDTIASC 103
Query: 74 KEVCPQIELVQVPVARG-----------------KADLSSYRNAGSEVVSILARK-GRCE 115
K CP + + V + K L YR +++ ++ + E
Sbjct: 104 KSKCPNVIIAHAAVYKKGESHWAYVEGLPAINKHKVSLDPYRRESRKILRVIGKSFDLTE 163
Query: 116 RASIDEVYLDLTDAAEAMLAETPPE----SLDEVDEEAL---------------KSHILG 156
+AS+DE Y+DL L + P+ S D + + I+
Sbjct: 164 KASVDECYIDLGREIYKRLIDLFPQLSRGSRDNPENSYANLPLIPPTLPLNLKWEGEIIN 223
Query: 157 LESKDGND----SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 212
E + D S +++W C G I+ E+R + +E +T SAG+A
Sbjct: 224 TEKEKSEDNDIVSPPVIEDWDDIC--------FIIGSQILLEVRKDIFEELGYTTSAGLA 275
Query: 213 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 272
K +AKLA+G KP QT + S++ L + + + +GGKLG S+ N++ V +
Sbjct: 276 RTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLGESIINKVNVPPQIN 335
Query: 273 LL-----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALK 327
+ FS+ ++E G G ++NI RGI+ E+Q+ + KS S K+F +
Sbjct: 336 SISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTIEVKSMTSTKNFTS-FVIS 394
Query: 328 TVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
+ WL +L RL +N ++ T
Sbjct: 395 NLFDAYDWLKVFAGDLHNRLIDLDSENMELSST 427
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 153/356 (42%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I HVD+D F+ +E R P L+G P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G +
Sbjct: 124 ------------------------------ENKLG----------------------IGS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLP+
Sbjct: 132 AVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPV 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMALIDCFG-RFGYDLYRKARGISNSPVKT 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G +++ + L V L LC +R+ + LE+N++ T+ L
Sbjct: 250 NRVRKSIGKERTY--RKLLYRDEDVLKELVSLC----QRVAASLERNEKQGRTIVL 299
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 170/379 (44%), Gaps = 83/379 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKR 66
R I HVD+D FY VEQ P+L G P AV GGG + A YEAR +GV+
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELIGKPLAV-------GGGEKRGVVSAASYEARKFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G AK CP + V AR K +++K R ++ D
Sbjct: 61 AMSGYMAKRNCPDLIFVPPRFARYKE---------------ISQKIRA-------IFYDY 98
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE +++ +K GN S +
Sbjct: 99 TDLVE-------PLSLDE-------AYLDVTVNKKGNPSAS------------------- 125
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
L+ E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+ L
Sbjct: 126 ---LLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLAFLEELE 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I+K + GK+ ++G+ T DL S + L++ +G +G + +++ RGI V+
Sbjct: 183 IRKFYGV-GKVTAEKMYKVGIFTGLDLKNKSLEFLEKHFG-KSGAYYYHVVRGIHNSPVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
+PKS G+ ++F + ++S L +L E ++ L L+++K T+TL
Sbjct: 241 PNRIPKSVGAERTFN-----ENLSSEIFMLERL-ENIANELERRLKKSKIAGKTITL--- 291
Query: 367 AFKSSDSDSRKKFPSKSCP 385
K SD + SK+ P
Sbjct: 292 --KIKYSDFTLQTRSKTIP 308
>gi|168819096|ref|ZP_02831096.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409248740|ref|YP_006884580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|205343975|gb|EDZ30739.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084568|emb|CBY94360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 351
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 147/345 (42%), Gaps = 71/345 (20%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A
Sbjct: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTAMA 62
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 63 LKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE----- 98
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE WL D+ H LI
Sbjct: 99 -----PLSLDEA--------------------------WLDVTDSPH---CYGSATLIAR 124
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +
Sbjct: 125 EIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGV 184
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
G L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS
Sbjct: 185 GKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKS 242
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G ++ + W + CE + E L +LE+ I
Sbjct: 243 VGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 136/310 (43%), Gaps = 64/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P LRG P AV G + A YEAR +GV +M
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPDLRGKPLAV--GGSAARGVVAAASYEARAFGVHSAMPSV 67
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
AK CP +L+ VP Y+ ++ I A E S+DE YLD+T
Sbjct: 68 TAKRKCP--DLIFVP-----PRFDVYKAISQQIREIFAEYTMLIEPLSLDEAYLDVT--- 117
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E LK + E
Sbjct: 118 -----------------ENLKGMAIATE-------------------------------- 128
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + ++ +++LP+KK
Sbjct: 129 IALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPNNGPSFVEALPVKKF 188
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G ++ +LG+ T DL S LQE +G +G + + +ARGI V+A +
Sbjct: 189 HGVGPATAERMR-KLGIETGLDLKSKSLIFLQEHFG-KSGPYFYGVARGIDERRVRADRI 246
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 247 RKSVGAEDTF 256
>gi|116254503|ref|YP_770339.1| DNA polymerase IV [Rhizobium leguminosarum bv. viciae 3841]
gi|115259151|emb|CAK10264.1| putative DNA polymerase [Rhizobium leguminosarum bv. viciae 3841]
Length = 370
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 135/311 (43%), Gaps = 64/311 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I HVD+D FY VEQR P+L GLP AV G + A YEAR +GV +M
Sbjct: 17 VRKIIHVDMDAFYASVEQRDNPELHGLPLAV--GGSAARGVVAAASYEARVFGVHSAMPS 74
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
AK CP +L+ VP YR ++ I A E S+DE YLD+T+
Sbjct: 75 VTAKRKCP--DLIFVP-----PRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTEN 127
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ M E+ E
Sbjct: 128 LKGM----------EIATE----------------------------------------- 136
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++LP+KK
Sbjct: 137 -IALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKK 195
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+G ++ G+ T DL S LQ+ +G +G + + IARGI +V+
Sbjct: 196 FHGVGPATAERMKRH-GIETGLDLKSKSLAFLQQHFG-KSGPYFYGIARGIDERQVRPDR 253
Query: 310 LPKSHGSGKSF 320
+ KS G+ +F
Sbjct: 254 IRKSVGAEDTF 264
>gi|377809466|ref|YP_005004687.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056207|gb|AEV95011.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
Length = 370
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 151/362 (41%), Gaps = 66/362 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R+I HVD+D FY +E R +P + P + GG G++A Y AR +GV +M
Sbjct: 10 SRMIIHVDMDAFYASIEMRDEPIYKTKPLIIAHDPRTNGGHGVVATANYVARQFGVHSAM 69
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
EA E+CP K D + YR + I E++ + TD
Sbjct: 70 SASEALELCPD-------AIFKKPDFTKYREVSHQ---------------IHEIFHEYTD 107
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
E P +LDE D + K ++
Sbjct: 108 EIE-------PVALDE-----------------------------AYLDVTNNKKNMSDS 131
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
VLI E++ ++ +T TCS GI++NK LAKLAS KP V V L+ +PI+
Sbjct: 132 VLIAHEIQKEIFAKTNLTCSTGISYNKFLAKLASEYEKPVGVAMVFPEDVTDFLNDMPIE 191
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
+ +G K + ++LGV DLL FSE L +G G L+ RGI V +
Sbjct: 192 SFRGVGKKTIPKM-HDLGVHFGRDLLSFSESDLIHYFG-KFGYVLYRQVRGIDDRPVAYQ 249
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
KS G ++ P L T V+ L + + L + + + + K I L L + F
Sbjct: 250 RERKSIGKEDTYINP--LTTDEEVELQLRIIAQNLLKYVTNQQKHGKTIV--LKLRYTDF 305
Query: 369 KS 370
++
Sbjct: 306 ET 307
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|357637556|ref|ZP_09135431.1| DNA polymerase IV [Streptococcus macacae NCTC 11558]
gi|357586010|gb|EHJ53213.1| DNA polymerase IV [Streptococcus macacae NCTC 11558]
Length = 368
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R PKL+G P + GG G+++ Y AR +GV +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPKLKGKPVVIGADPRLTGGRGVVSTANYVARKFGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + + + Y G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAVFI-------RGNHTKYYEVGMQVRKIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LGL S
Sbjct: 124 ------------------------ANKLGLTS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T + K L SLPI
Sbjct: 132 AVKIAKLIQYDIWKELHLTCSAGVSYNKFLAKLASDYEKPHGLTVILPEEAKTFLSSLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G + L + +GV T DL + E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKRSVEKLHH-MGVFTGKDLQEIPEMTLIDLFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSF 320
+ KS G+ +++
Sbjct: 250 HRIRKSIGNERTY 262
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 144/332 (43%), Gaps = 64/332 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P LRG P AV ++ G + A YEAR YGV+ +M
Sbjct: 3 RKIIHIDMDAFYASVEQRDDPSLRGKPVAVGGSSDR--GVVAAASYEARKYGVRSAMSSK 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A CP + V K Y+ ++ I A + T E
Sbjct: 61 VAARKCPALIFV-------KPRFEVYKYVSEQIRGIFA---------------EFTPLIE 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K + LI
Sbjct: 99 -------PLSLDE-----------------------------AYLDVTENLKKMRSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E++ ++++ T+ T SAG+++NK LAKLAS KP + + + +L + K
Sbjct: 123 AQEIKQRIVETTQLTASAGVSYNKFLAKLASDFRKPNGIYVIGPDEGEAFVANLTVNKFH 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ N+LG+ T DL +E L+ +G G++ +NIARGI V+A +
Sbjct: 183 GI-GKVTAEKMNQLGIQTGMDLKSKTEFFLRTHFG-KMGSYYYNIARGIDQRPVEADRIR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS GS +F R L+T+A ++ L L E++
Sbjct: 241 KSVGSENTF--DRDLETLAEMEGGLLPLIEDV 270
>gi|114562139|ref|YP_749652.1| DNA polymerase IV [Shewanella frigidimarina NCIMB 400]
gi|122300543|sp|Q086K1.1|DPO4_SHEFN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|114333432|gb|ABI70814.1| DNA-directed DNA polymerase [Shewanella frigidimarina NCIMB 400]
Length = 359
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 111/426 (26%), Positives = 182/426 (42%), Gaps = 88/426 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DC++ VE R P+LRG P AV ++ + G + YEAR +GV+ +M
Sbjct: 2 RKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRR-GVISTCSYEARKFGVRSAMSSY 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CPQ L+ VP G+ ++ Y++ ++ I R E S+DE YLD+TD
Sbjct: 61 HALQLCPQ--LILVP---GRMEV--YKSVSLQIREIFHRYTDLVEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
CDA L
Sbjct: 112 ---------------------------------------------CDAHQ-----GSATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R ++ + T T SAGIA K LAK+AS +NKP Q + + + + LP+ K+
Sbjct: 122 IAKTIRDEIFEVTGLTASAGIAPIKFLAKIASDLNKPNGQYVITPNQIADFVKDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + ++G+TT D+ ++ + +L E++G G L A+GI ++ +
Sbjct: 182 PGV-GKVTSKKLADIGLTTCYDVQQYPKVQLIEAFG-KFGHVLAERAQGIDSRQISPHRV 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
KS G + + + T+ L QL +ELS R+ + + + L + FK
Sbjct: 240 RKSVGVETTL--AKDIFTLEQCHQVLPQLIQELSTRVRRSAKDRQIHKQVVKLKFNDFKQ 297
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 430
+ + R E + NLF L + L Q S G R+ +S
Sbjct: 298 TTIEHRS----------------DEISINLFHELLLQAL-------QRSQGRGIRLVGVS 334
Query: 431 VSASKI 436
V + +
Sbjct: 335 VGLADV 340
>gi|123443410|ref|YP_001007383.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420257437|ref|ZP_14760195.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|189044619|sp|A1JNY3.1|DPO4_YERE8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122090371|emb|CAL13239.1| DNA-damage-inducible protein P [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|404515086|gb|EKA28863.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 352
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 145/346 (41%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D +D +A C L
Sbjct: 108 ------------------------------DVSDCQA--------CSGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAQEIRQAIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV L
Sbjct: 182 PGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L E+L +LE R
Sbjct: 240 RKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 71/359 (19%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVK 65
+++ R I H+D+D FY VEQR P+LRG AV G G++A YEAR YGV+
Sbjct: 5 ENNSLRKIIHIDMDAFYASVEQRDFPELRGKAIAVG--GSPDGRGVVATCSYEARKYGVR 62
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYL 124
+M A ++CP + R + D+ Y+ S + SI R E S+DE YL
Sbjct: 63 SAMSSRTAIKLCPHLIF-----TRPRFDV--YKEVSSHIRSIFYRYTDIIEPLSLDEAYL 115
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T D K +
Sbjct: 116 DVT------------------------------------DDKQNI--------------- 124
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ I +++ ++ E + T SAGI+ +K +AK+AS KP T + S + +++
Sbjct: 125 -GSAIDIAKKIKQEIKDELDLTASAGISTSKFIAKIASDFQKPDGLTFIGPSKIVPFIEA 183
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPI+K + GK+ + +LG+ DL K+ ++ L + +G +G + + I RGI
Sbjct: 184 LPIEKFFGV-GKVTAAKMKKLGIFNGADLKKWKQNDLTKQFG-KSGKFFYEIVRGIDNRS 241
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
V+ + KS G+ +F + ++ LN+ ++LSER+ L + T+TL
Sbjct: 242 VKPNRISKSVGAEDTFEN-----DIDDIE-ILNEELQKLSERVSRRLNDKEFKGKTMTL 294
>gi|415885417|ref|ZP_11547345.1| DNA polymerase IV [Bacillus methanolicus MGA3]
gi|387591086|gb|EIJ83405.1| DNA polymerase IV [Bacillus methanolicus MGA3]
Length = 427
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 156/354 (44%), Gaps = 67/354 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+I HVD++ FY VE P L+G P A+ E + G ++ YEAR +GVK +M
Sbjct: 9 GRVILHVDMNSFYASVEMSYDPSLKGKPLAIAGDAEERRGIIVTCSYEARKFGVKTTMPL 68
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
EAK++CPQ+ +++ P + YR ++ IL + E SIDE Y+D+TD+
Sbjct: 69 WEAKKLCPQL-IIRKP------NFERYRAVSIKIFEILRQYSDLVEPVSIDEGYMDITDS 121
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
DKL V
Sbjct: 122 ----------------------------------------------------DKL-GTPV 128
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I ++ ++L++ + CS GIA NK LAK+AS M KP T + V +L L + +
Sbjct: 129 EIARTIQKRLLEQLDLPCSIGIAPNKFLAKMASDMKKPLGITILRKRDVPNILWPLDVGQ 188
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
M +G K L ++G+ T+GDL K +E +L+ G N G L A G V
Sbjct: 189 MHGVGKKTAEKLA-KIGIRTIGDLAKANEIQLKNLLGIN-GARLKERANGNDWRPVD--- 243
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
P S KS L + Q L Q+ + L+E++ + L++ K +A + +
Sbjct: 244 -PDSVSDFKSVGNSTTLPKDITNQQVLFQVLDGLAEKVAARLKRKKVLAANIAI 296
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGVYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|307352827|ref|YP_003893878.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156060|gb|ADN35440.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 361
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 153/338 (45%), Gaps = 65/338 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAV-VQYNEWKGGGLIAV-GYEARNYGVKRSMR 69
RII H+D+D F+ VE R+ P L+G P V KG G+++ YEAR YG++ +M
Sbjct: 9 RIIMHIDMDSFFASVEVRENPSLKGKPVVVGADPKGGKGRGVVSTCSYEAREYGIRSAMP 68
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A +CP E + +PV ++ Y+ + V++I+ + +D
Sbjct: 69 VSTAYRLCP--ECIFLPV-----NMQLYKKTSANVMNIMR---------------EYSDK 106
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ + +DE L +G S D +S
Sbjct: 107 FQQV----------SIDEAYLDISFIG--SYDNAES------------------------ 130
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ E++ ++ TCS GI K++AK+ASGMNKPA T V +++ LD LP+
Sbjct: 131 -VGREIKERIFHAEGLTCSVGIGPGKVIAKIASGMNKPAGMTVVRPDAIRDFLDPLPVDA 189
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L+ G+ T+ DLL +L++++G G + +ARGI EV+ +
Sbjct: 190 IPGIGKKTKVRLEKH-GIVTIKDLLGCDIQELKDAFG-KHGIMMHRLARGIDDSEVREKE 247
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P + + + L+ LCE + RL
Sbjct: 248 GQKSIGKQTTY--PEDVSDTSILLSDLSDLCENVQNRL 283
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 143/336 (42%), Gaps = 64/336 (19%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
++ R I H+D+D FY VEQR P L+G P AV + E G + A YEAR +GV+ +
Sbjct: 2 TAVVRRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQER--GVVAAASYEARKFGVRSA 59
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M +A+ CP L+ VP YR +++ +I AR Y L
Sbjct: 60 MPSVQAQRKCPH--LIFVP-----PRFDVYRAVSAQIHAIFAR------------YTPLI 100
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
P SLDE D H
Sbjct: 101 Q----------PLSLDE-----------------------------AYLDVTHPLLPRPS 121
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 122 ATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPV 181
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+G ++ LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 182 NAFHGVGPATARRMRT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEP 239
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS G +F + L+T A + L +L ++
Sbjct: 240 NRPRKSLGKEVTF--EQDLRTPAELHAALRELASKV 273
>gi|422316729|ref|ZP_16398113.1| DNA polymerase IV [Fusobacterium periodonticum D10]
gi|404590701|gb|EKA93027.1| DNA polymerase IV [Fusobacterium periodonticum D10]
Length = 352
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 170/383 (44%), Gaps = 79/383 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
RII H D+D FY +E + PKL+ P V G ++ YEAR YG+ +M+
Sbjct: 3 RIIMHYDMDAFYASIEINRNPKLKNKPLVV-------GENIVTTASYEARKYGIHSAMKV 55
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDLTDA 129
+AK +CP+ L+ +PV D Y +E+ + IL + E + DE Y+DLT
Sbjct: 56 SDAKLLCPK--LIAIPV-----DKKEYIRISNEIHNLILKITNKVEFIATDEGYIDLTGI 108
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ PE+ + ALK K +KE
Sbjct: 109 VK-------PENKKQF---ALKF-------------KERIKEL----------------- 128
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
T TCS GI NK+ AK+AS +NKP F + K ++ + KK
Sbjct: 129 -------------TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKNFIEYISDKK 173
Query: 250 MKQL---GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+K + G K L+++ + V D+ K+S D L + YG + G L+ RGI+ +EV+
Sbjct: 174 IKIIPGVGRKFSEILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVE 232
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 366
S G+ +++ P L+T++ ++ N L E +RL + ++ I T+ + +
Sbjct: 233 YEREIHSIGNEETYSIP--LQTISELEREFNSLFEYTYQRLIKNNVFSQSI--TVKIRYT 288
Query: 367 AFKSSDSDSRKKFPSKSCPLRYG 389
+FK+ + KF +K Y
Sbjct: 289 SFKTYTKSKKLKFATKDKDFLYN 311
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 142/334 (42%), Gaps = 63/334 (18%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R+ P L+G P AV + +G L YEAR +G+ +M +A
Sbjct: 7 IIHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGV-LTTCNYEARKFGLHSAMPTAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP L+ VPV +++ Y+ ++ I R Y D+ +
Sbjct: 66 IKKCP--NLILVPV-----NMALYKQVSVQIHQIFQR------------YTDIIE----- 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D H K I
Sbjct: 102 -----PLSLDE-----------------------------AYLDVTHCQKCSGSATWIAQ 127
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E T SAG+A K LAK+AS MNKP Q + + V + +LP+ K+ +
Sbjct: 128 EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLPLNKIPGV 187
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ + ++G+ T D+ F + L +G G +W+ + GI EVQA KS
Sbjct: 188 -GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKS 245
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
G ++ + T+ LN L +EL RL
Sbjct: 246 VGVEQTL--IENIHTIEQASALLNNLYQELIRRL 277
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 150/351 (42%), Gaps = 80/351 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P LRG AV GGG + YEAR YGV +M G A
Sbjct: 1 MDAFYASVEQLDFPYLRGKAIAV-------GGGEARGVVATASYEARQYGVHSAMSGVLA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEA 132
++ CP L+ VP Y+ + SI R E S+DE YLD+T
Sbjct: 54 RKRCPH--LIFVP-----PRFERYKEISRHIRSIFHRYTDLVEPLSLDEAYLDVT----- 101
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
+K GN S LI
Sbjct: 102 -------------------------HNKVGNPS----------------------ATLIA 114
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
E+R + ET T SAGI+ NK +AK+AS +NKP Q TV ++ LD+L +KK
Sbjct: 115 QEIRQAIFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQDEIQDFLDALNVKKFYG 174
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+ GK+ LGV T DL + S L+ ++G N+G + +ARGI EVQ + K
Sbjct: 175 I-GKVTAEKMYALGVFTGKDLRQKSLAFLERNFG-NSGKHYYQLARGIHNGEVQPFRIRK 232
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
S G+ ++F + + S + L +L + ++ + L Q K TLT+
Sbjct: 233 SVGAEQTFA-----ENLTSEIYMLKEL-DSIASEVAMRLAQQKVAGKTLTI 277
>gi|433615571|ref|YP_007192366.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
gi|429553818|gb|AGA08767.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
Length = 369
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 138/318 (43%), Gaps = 66/318 (20%)
Query: 6 PDSSGARI--IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
P S G R+ I H+D+D FY VEQR P+LRG P A V Y E + G + A YEAR +G
Sbjct: 9 PPSPGGRVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPEAR-GVVAAASYEARKFG 66
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 122
V +M AK CP EL+ VP YR ++ +I A E S+DE
Sbjct: 67 VHSAMPSVTAKRKCP--ELIFVP-----HRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEA 119
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T+ + T E+ EE
Sbjct: 120 YLDVTENFRGLKLAT------EIAEE---------------------------------- 139
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+R ++ ET T SAG+++NK LAK+AS KP + +
Sbjct: 140 ------------IRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFV 187
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+LP+KK +G ++ LG+ T DL LQ+ +G +G + + IARGI
Sbjct: 188 QALPVKKFHGVGPATAEKMKR-LGIETGADLKSRDLAFLQQHFG-KSGPYFYWIARGIDE 245
Query: 303 EEVQARLLPKSHGSGKSF 320
EV+ + KS G+ +F
Sbjct: 246 REVKPDRIRKSIGAEDTF 263
>gi|205373932|ref|ZP_03226733.1| DNA polymerase IV [Bacillus coahuilensis m4-4]
Length = 400
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 177/429 (41%), Gaps = 87/429 (20%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R+I HVD++ FY VE P+L+G P AV + + G +I YEAR YG+K +M
Sbjct: 8 AGRVILHVDMNSFYASVEMAYNPELKGKPIAVAGNPDERKGIIITCSYEARKYGIKTTMP 67
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
EAK++CP + +V P + YR+A + IL + E SIDE Y+D+TD
Sbjct: 68 LWEAKKLCPHL-MVMGP------NFDRYRDASKGMFDILRSFTHLVEPVSIDEGYMDITD 120
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
E L
Sbjct: 121 CFE-----------------------------------------------------LGTP 127
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ I ++ ++L++ + CS GIA NK LAK AS M KP T + V +L +
Sbjct: 128 IFIAETIQNRILQQLDLPCSIGIAPNKFLAKTASDMKKPLGITILRKREVSSILWPKDVL 187
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
M +G K L N + + T+GDL +E L+ G N G L A GI V
Sbjct: 188 SMHGVGSKTAEKLNN-IHIYTIGDLANANEFSLKTLLGIN-GPRLKERANGIDERPVD-- 243
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
P S K+ R L + Q L ++ E LS+++ + L+ + +A+ L++ +
Sbjct: 244 --PDSIYVYKTIGNSRTLPRDVTNQRQLLEVLEGLSDKVATRLKNKRVMANQLSITIR-Y 300
Query: 369 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 428
+ + +R K K + Y +I + LF A H++G +
Sbjct: 301 NNWKTITRSK---KQTRVLYKKEEIYQSAKELFLA----------------HWTGNPVRL 341
Query: 429 LSVSASKIV 437
L ++ S +V
Sbjct: 342 LGITTSDLV 350
>gi|421887936|ref|ZP_16319060.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
gi|378966697|emb|CCF95808.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
Length = 362
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 151/339 (44%), Gaps = 65/339 (19%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R I H D DCFY +E R P+L GLP AV E +G + YEAR +G+ +M
Sbjct: 5 AVRKIIHCDCDCFYAAIEMRDDPRLVGLPLAVGGRPERRGV-VATCNYEARKFGIHSAMP 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
+A + CP +LV +P A + YR ++ +I + E S+DE YLD+TD
Sbjct: 64 MAQAVKRCP--DLVILPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ MLA + G
Sbjct: 117 ST--MLAGS--------------------------------------------------G 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++
Sbjct: 125 TRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQVDAFVAALPVE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI VQ
Sbjct: 185 RLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHRPVQPS 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS +++ L+T+ Q L L ++L+ R+
Sbjct: 243 QIRKSVSVEETYATD--LRTLDDCQRELTVLVDQLAARV 279
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D H K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTHNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 GEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V WKG + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WKGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 GDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|386087258|ref|YP_006003132.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|386345357|ref|YP_006041521.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387910359|ref|YP_006340665.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
gi|312278971|gb|ADQ63628.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|339278818|emb|CCC20566.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387575294|gb|AFJ84000.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
Length = 367
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 136/313 (43%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ QVE R P L+ P + GG G+++ YEAR YGV +M
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPVIIGNDPRKTGGRGVVSTCNYEARKYGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLT 127
EA E CP + + S YR G ++ I E SIDE YLD+T
Sbjct: 71 SSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L LPI
Sbjct: 132 AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 192 AKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>gi|322434446|ref|YP_004216658.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
gi|321162173|gb|ADW67878.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
Length = 368
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 147/362 (40%), Gaps = 75/362 (20%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNY 62
R + R I HVD+D FY VEQR LRG P V WKG + A YEAR +
Sbjct: 10 RREGGSGRKIVHVDMDAFYASVEQRDDAGLRGRPVVVA----WKGRRSVVCAASYEARRF 65
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDE 121
GV+ +M A+ +CP E + VP D + Y+ V I R E S+DE
Sbjct: 66 GVRSAMPAVTAERLCP--EAIFVP-----PDFTRYKAVSRAVREIFERHTDLVEPLSLDE 118
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
YLD+T E+K G
Sbjct: 119 AYLDVT------------------------------ENKLG------------------- 129
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
LA + +R Q+ +E T SAG+A NK LAK+AS KP + V+G
Sbjct: 130 ---LATATRVAKMIREQIREELNLTASAGVAPNKFLAKIASDWKKPDGLFVIQPHEVQGF 186
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L LP+ ++ + GK+ +G+ TVGDL L++ +G G L+ +ARG+
Sbjct: 187 LMPLPVGRIPGV-GKVTEERMKSVGIATVGDLHAMDHPTLEQHFG-RYGRRLYELARGVD 244
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
V A KS + +F L L L+E++ QN R+A T+
Sbjct: 245 ENPVVANRSSKSLSAEDTFEKDIPLAET-------EPLVRRLAEKVWLASRQNARMARTV 297
Query: 362 TL 363
L
Sbjct: 298 VL 299
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 311 PKSHGSGKSF 320
KS G+ +F
Sbjct: 242 RKSVGTEHTF 251
>gi|55821632|ref|YP_140074.1| DNA polymerase IV [Streptococcus thermophilus LMG 18311]
gi|81560203|sp|Q5M2Y5.1|DPO4_STRT2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55737617|gb|AAV61259.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus LMG
18311]
Length = 367
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 136/313 (43%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ QVE R P L+ P + GG G+++ YEAR YGV +M
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPVIIGNDPRKTGGRGVVSTCNYEARKYGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLT 127
EA E CP + + S YR G ++ I E SIDE YLD+T
Sbjct: 71 SSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L LPI
Sbjct: 132 AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 192 AKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>gi|384426413|ref|YP_005635770.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
gi|341935513|gb|AEL05652.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
Length = 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 151/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + V VP D + Y+ +V I R E S+DE YLD+T+
Sbjct: 58 AVRAERLCP--DAVFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T E+ +
Sbjct: 111 AKTGMQLAT------EIAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L LP+
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL ++L +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKLAA-LGIVTVSDLRLRPLEELHAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ + L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDA-------LDPHIQRLAEKTWHATRRTERIGRTVVL 284
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 142/336 (42%), Gaps = 64/336 (19%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
++ R I H+D+D FY VEQR P L+G P AV + E G + A YEAR +GV+ +
Sbjct: 2 TAVVRRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQER--GVVAAASYEARKFGVRSA 59
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M +A+ CP L+ VP YR +++ +I AR Y L
Sbjct: 60 MPSVQAQRKCPH--LIFVP-----PRFDVYRAVSAQIHAIFAR------------YTPLI 100
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
P SLDE D H
Sbjct: 101 Q----------PLSLDE-----------------------------AYLDVTHPLLPRPS 121
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 122 ATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPV 181
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 182 NAFHGVGPATARRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEP 239
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS G +F + L+T A + L +L ++
Sbjct: 240 NRPRKSLGKEVTF--EQDLRTPAELHAALRELASKV 273
>gi|336476258|ref|YP_004615399.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929639|gb|AEH60180.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 361
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 181/409 (44%), Gaps = 84/409 (20%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG---YEARNY 62
PDS I H+D+D F+ VE ++P L+GLP V+ + KG G V YEAR Y
Sbjct: 5 PDS----IKFHIDMDSFFASVETSQRPDLKGLPV-VIGSDPKKGAGRGVVSTCSYEARKY 59
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDE 121
G+ +M +A +CP V +PV + + Y+ + ++ IL R R E+ S+DE
Sbjct: 60 GIHSAMPISKAYRLCPH--AVYLPV-----NSALYKKTSNRIMVILQRFAERFEQVSVDE 112
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
YLD+ K T D DH
Sbjct: 113 AYLDM-------------------------------------GKKVT--------DYDH- 126
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
AC +I +++ ++ + TCS GIA K +AK+AS NKP T VP + VK
Sbjct: 127 ----AC--MIAEQIKKEIFRAEGLTCSIGIAPGKKVAKIASDYNKPDGLTVVPPAKVKEF 180
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L +P+ K+ +G K L+ E+ + VG L ++ L +G +G ++ IA G+
Sbjct: 181 LAPMPVSKIPGIGKKTEQMLR-EMNIYRVGQLAEYDVQALISRFG-KSGIFMKQIANGVD 238
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
E++ KS +F A + V+ L LCEE+ + + + + I TL
Sbjct: 239 HGEIKQYRESKSISKEDTFEEDTADYRI--VESVLMSLCEEVHRAMKINNFRFRTI--TL 294
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 410
+ S F++ S K P++ + I++ + NL ++EF+G
Sbjct: 295 KVRFSDFRTYTRSSTLKCPAEEMDI------IKQHSKNL----IKEFIG 333
>gi|332160678|ref|YP_004297255.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664908|gb|ADZ41552.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862504|emb|CBX72661.1| DNA polymerase IV [Yersinia enterocolitica W22703]
Length = 352
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 145/346 (41%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASQHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D +D +A C L
Sbjct: 108 ------------------------------DVSDCQA--------CSGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAQEIRQAIAIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV L
Sbjct: 182 PGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L E+L +LE R
Sbjct: 240 RKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 157/350 (44%), Gaps = 78/350 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P+LRG AV GGG + YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAV-------GGGEPRGVVATASYEARKFGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+++CP + V+ R K R E + E S+DE YLD+T
Sbjct: 54 RKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAYLDVT------ 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
+K GN S LI
Sbjct: 102 ------------------------VNKKGNPS----------------------ATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K +
Sbjct: 116 EIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLDRLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS
Sbjct: 176 -GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRSEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G+ ++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 234 VGAEETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 277
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 142/336 (42%), Gaps = 64/336 (19%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
++ R I H+D+D FY VEQR P L+G P AV + E G + A YEAR +GV+ +
Sbjct: 3 TAVVRRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQER--GVVAAASYEARKFGVRSA 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M +A+ CP L+ VP YR +++ +I AR Y L
Sbjct: 61 MPSVQAQRKCPH--LIFVP-----PRFDVYRAVSAQIHAIFAR------------YTPLI 101
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
P SLDE D H
Sbjct: 102 Q----------PLSLDE-----------------------------AYLDVTHPLLPRPS 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 123 ATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPV 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 183 NAFHGVGPATARRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEP 240
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS G +F + L+T A + L +L ++
Sbjct: 241 NRPRKSLGKEVTF--EQDLRTPAELHAALRELASKV 274
>gi|261195218|ref|XP_002624013.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
gi|239587885|gb|EEQ70528.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
Length = 1171
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 156/356 (43%), Gaps = 50/356 (14%)
Query: 5 RPDSSGAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
+P +GAR I HVD D F+ V RK P+L P A+ + G + + Y AR++G
Sbjct: 362 KPHVTGARRYILHVDFDSFFAAVSIRKHPELVDQPVAIA-HGTGPGSEIASCNYPARSFG 420
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEV 122
+K M A ++CP ++++ D ++Y A IL+ G + SIDE
Sbjct: 421 IKNGMWMKAALQMCPNLKVLPY-------DFAAYEQASRAFYEVILSIDGIVQSVSIDEA 473
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHR 181
+D+T L DG S+ ++ W + AD
Sbjct: 474 LVDITGVC------------------------LDAGGSDGRGISEGSI--WREQEKADE- 506
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
I LR V + T S GI N + A++A KPA Q + +V
Sbjct: 507 ---------IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDF 557
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ +L +K + + LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI
Sbjct: 558 IGTLAVKDLPGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGID 616
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV + P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 617 NTEVGVQ-APRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|226292210|gb|EEH47630.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb18]
Length = 1161
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 159/349 (45%), Gaps = 51/349 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD D F+ V RK P+L P A+ + G + + Y AR++G+K M
Sbjct: 366 RYIMHVDFDSFFAAVSIRKHPELADQPVAIA-HGTGPGSEIASCNYPARSFGIKNGMWMK 424
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDLTDAA 130
A ++CP ++++ D ++Y A IL+ G + SIDE +D+T+
Sbjct: 425 GALQMCPNLKVLPY-------DFAAYEEASRNFYDVILSIDGIVQSVSIDEALVDITNIC 477
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
LD A S +G+ S+ ++ + D
Sbjct: 478 -----------LD-----AGGSDGIGI-------SEGSIYREQAKADE------------ 502
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +LR V ++T S GI N + A++A KPA Q + +V+ + L +K +
Sbjct: 503 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDL 562
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++
Sbjct: 563 PGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVP 621
Query: 311 PKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 357
KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 622 RKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|365848138|ref|ZP_09388617.1| DNA polymerase IV [Yokenella regensburgei ATCC 43003]
gi|364571339|gb|EHM48930.1| DNA polymerase IV [Yokenella regensburgei ATCC 43003]
Length = 351
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAI-GGSRVQRGVISTANYPARKFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + I +R E S+DE YLD++D+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASVHIREIFSRYTSLIEPLSLDEAYLDVSDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
H LG L
Sbjct: 114 ----------------------HCLG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 122 MAQEIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPAFLKTLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T D+ K L + +G G LW ++GI E+ + L
Sbjct: 182 PGV-GKVSAAKLESMGLRTCEDVQKSDLAMLLKRFG-KFGRVLWERSQGIDEREISSERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + + W CE + ERL +LE+
Sbjct: 240 RKSVGVERTL--------IEDIHDWAE--CEAIIERLYPELERR 273
>gi|148653720|ref|YP_001280813.1| DNA-directed DNA polymerase [Psychrobacter sp. PRwf-1]
gi|148572804|gb|ABQ94863.1| DNA-directed DNA polymerase [Psychrobacter sp. PRwf-1]
Length = 369
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 150/354 (42%), Gaps = 71/354 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKRSMRG 70
R I H+D+D FY VEQR P+LRG P V + G G++A YE R +GV+ +M
Sbjct: 17 RKIIHLDMDAFYASVEQRDNPQLRGKPLVVG--GDPSGRGVVAAASYEIRKFGVRSAMSC 74
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTDA 129
EAK CP+ V + YR ++ I L+ E S+DE YLD+T
Sbjct: 75 YEAKRRCPEAIFV-------RPRFEVYRQVSQQIRDIMLSLTDLVEPLSLDEAYLDVT-- 125
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+K+H + S + WL
Sbjct: 126 -------------------GIKAH---------HGSATLMANWL---------------- 141
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
R Q+ ++T+ SAG++ NKMLAK+AS +NKP + + +LPI++
Sbjct: 142 ------RAQIYEQTQLRASAGVSFNKMLAKIASDINKPNGIAVITPDQADAFIATLPIER 195
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+G L +E+G+ T DL D L+ +G G + IA G V+A
Sbjct: 196 FHGIGKATAKRL-HEMGIYTGADLRAAPVDTLEYEFG-KRGRFYSEIAHGNDNRPVKAER 253
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS GS +F + + L Q+ E+ ++ L + R+ HT+TL
Sbjct: 254 KHKSVGSETTF-----RDNLRDTDNLLVQIFEQNADAF-EQLSKKGRLGHTITL 301
>gi|239610626|gb|EEQ87613.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ER-3]
Length = 1171
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 156/356 (43%), Gaps = 50/356 (14%)
Query: 5 RPDSSGAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
+P +GAR I HVD D F+ V RK P+L P A+ + G + + Y AR++G
Sbjct: 362 KPHVTGARRYILHVDFDSFFAAVSIRKHPELVDQPVAIA-HGTGPGSEIASCNYPARSFG 420
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEV 122
+K M A ++CP ++++ D ++Y A IL+ G + SIDE
Sbjct: 421 IKNGMWMKAALQMCPNLKVLPY-------DFAAYEQASRAFYEVILSIDGIVQSVSIDEA 473
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHR 181
+D+T L DG S+ ++ W + AD
Sbjct: 474 LVDITGVC------------------------LDAGGSDGRGISEGSI--WREQEKADE- 506
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
I LR V + T S GI N + A++A KPA Q + +V
Sbjct: 507 ---------IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDF 557
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ +L +K + + LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI
Sbjct: 558 IGTLAVKDLPGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGID 616
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV + P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 617 NTEVGVQ-APRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|62178884|ref|YP_215301.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224582154|ref|YP_002635952.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113190|ref|ZP_09758360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75484717|sp|Q57SU1.1|DPO4_SALCH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|62126517|gb|AAX64220.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224466681|gb|ACN44511.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713336|gb|EFZ04907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 351
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 145/347 (41%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLL-------PGRFVAYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|354596399|ref|ZP_09014416.1| DNA polymerase IV [Brenneria sp. EniD312]
gi|353674334|gb|EHD20367.1| DNA polymerase IV [Brenneria sp. EniD312]
Length = 352
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 165/413 (39%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YG+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGIHSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CPQ+ L+ G+ ++ Y+ A ++ I AR E S+DE YL
Sbjct: 61 TALRLCPQLTLLS-----GRMEV--YKAASRQIRDIFARYTSLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D DS C+ L
Sbjct: 108 ------------------------------DVTDSPY--------CNGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E+R + E T SAG+A K LAK+AS +NKP Q +P + + LP+ K+
Sbjct: 122 MAEEIRQAIAAELNLTASAGVAPIKFLAKVASELNKPNGQFVIPPDRMDAFILQLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ +S +L ++G G LW GI V L
Sbjct: 182 PGVGKVTAKRLE-EKGLLTCADVRHYSLAELLRNFG-KFGRVLWERCHGIDERSVSPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFK 369
KS G K+ + HW CE L E+L +LE + KR+ L + K
Sbjct: 240 RKSVGVEKTL--------AQDIHHW--HECEGLIEQLYQELELRLKRVKPDLHIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D R+ P+ ++D L Q RE GV+ G H +
Sbjct: 290 LKFDDFRQTTQEHVWPVLN-----KQDLLTLAQQTWRERRDKRGVRLVGLHVT 337
>gi|417331453|ref|ZP_12115694.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585430|gb|EHC45268.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 298
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|241663231|ref|YP_002981591.1| DNA polymerase IV [Ralstonia pickettii 12D]
gi|240865258|gb|ACS62919.1| DNA-directed DNA polymerase [Ralstonia pickettii 12D]
Length = 357
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 149/337 (44%), Gaps = 65/337 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H D DCFY +E R P+L G P AV E +G + YEAR +G+ +M
Sbjct: 2 RKIIHCDCDCFYAAIEMRDDPRLVGKPLAVGGRPERRGV-VATCNYEARKFGIHSAMPMA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A + CP +L+ VP + YR ++ +I + E S+DE YLD+TD+
Sbjct: 61 QAVKRCP--DLLIVP-----PSMEKYRQVARQIFAIYHSYTPLVEPLSLDEAYLDVTDSP 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
MLA A G
Sbjct: 114 --MLA--------------------------------------------------ASGTR 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I ++R +V +E T SAG+A NK +AK+AS NKP V + G + LP+ ++
Sbjct: 122 IAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVAELPVDRL 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + LG T GDL + D+LQ+ +G G L ++ RGI +VQ +
Sbjct: 182 FGV-GKVTAAKLRRLGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHRQVQPSQI 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 240 RKSVSVEETYAT--DLRTLDDCQRELSVLVEQLAARV 274
>gi|327348940|gb|EGE77797.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ATCC
18188]
Length = 1171
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 156/356 (43%), Gaps = 50/356 (14%)
Query: 5 RPDSSGAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
+P +GAR I HVD D F+ V RK P+L P A+ + G + + Y AR++G
Sbjct: 362 KPHVTGARRYILHVDFDSFFAAVSIRKHPELVDQPVAIA-HGTGPGSEIASCNYPARSFG 420
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEV 122
+K M A ++CP ++++ D ++Y A IL+ G + SIDE
Sbjct: 421 IKNGMWMKAALQMCPNLKVLPY-------DFAAYEQASRAFYEVILSIDGIVQSVSIDEA 473
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHR 181
+D+T L DG S+ ++ W + AD
Sbjct: 474 LVDITGVC------------------------LDAGGSDGRGISEGSI--WREQEKADE- 506
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
I LR V + T S GI N + A++A KPA Q + +V
Sbjct: 507 ---------IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDF 557
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ +L +K + + LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI
Sbjct: 558 IGTLAVKDLPGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGID 616
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV + P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 617 NTEVGVQ-APRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|387880280|ref|YP_006310583.1| DNA polymerase IV [Streptococcus parasanguinis FW213]
gi|386793729|gb|AFJ26764.1| DNA polymerase IV [Streptococcus parasanguinis FW213]
Length = 368
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 149/356 (41%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + Q GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA ++CPQ + + YR G +V I R E SIDE YLD+T
Sbjct: 71 SSKEALDLCPQAIFIS-------GNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + SK+ VK
Sbjct: 124 E--------------------------------NKIQSKSAVK----------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + +E T SAG+++NK LAK+AS KP T V + L + I
Sbjct: 135 ---IARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPEDAEDFLSQMDI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L +E+GV T DLL SE L + +G G L+ ARGI V
Sbjct: 192 AKFHGVGKKTVERL-HEMGVYTGADLLAVSEMTLIDRFG-RFGYDLFRKARGIHNSPV-- 247
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KSH KS R + + + + + LS ++ LE++ + TL L
Sbjct: 248 ----KSHRIRKSIGKERTYRKLLYAEDDILEEIANLSSKVAQSLEKHDKQGKTLVL 299
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 161/381 (42%), Gaps = 69/381 (18%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGV 64
P ++ R I HVD+D FY VEQ P+ RG P V + G++A YEAR YGV
Sbjct: 4 PKTNTVRKIIHVDMDAFYASVEQMDHPEWRGKPLVV---GGSRARGVVAAASYEARKYGV 60
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYL 124
+M A CP + K YR +S++ R EV+
Sbjct: 61 YSAMASSIAVRKCPHLIF-------AKPRFDRYRE-----LSLMIR----------EVFY 98
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
+ TD E P SLDE D K
Sbjct: 99 EYTDLVE-------PLSLDE-----------------------------AFLDVTENKKG 122
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ +LI ++R ++ ++T SAG+++NK LAK+AS +NKP Q + + L+
Sbjct: 123 INSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYILPEDAEEFLEK 182
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPI K +G +Q ++G+ DL +FS L + +G +G +NI RGI E
Sbjct: 183 LPIGKFFGIGKVTAEKMQ-KIGIHNGADLKQFSLQFLSKKFG-KSGLHYFNIVRGIHLSE 240
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364
VQ + KS + +F L T + + L + EE+ RL + + + TL L
Sbjct: 241 VQPHRVRKSLSAENTFEVD--LTTDEELLNKLQPIYEEVIRRLDKSGIKGRTV--TLKLK 296
Query: 365 ASAFK-SSDSDSRKKFPSKSC 384
S F + S + +++P K
Sbjct: 297 YSDFSLQTRSKTLEQYPDKEM 317
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 157/355 (44%), Gaps = 76/355 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P+LRG AV GGG + YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAV-------GGGEPRGVVATASYEARKFGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+++CP + V+ R K R E + E S+DE YLD+T
Sbjct: 54 RKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAYLDVT------ 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
+K GN S LI
Sbjct: 102 ------------------------VNKKGNPS----------------------ATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ S V+ LD L ++K +
Sbjct: 116 EIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITESEVQNFLDRLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ +L + S + L+ ++G N+G + + +ARGI EVQ + KS
Sbjct: 176 -GKVTAEKMYQLGIFKGRNLREKSLEFLERNFG-NSGNYYYELARGIHRSEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
G+ ++F L + + L+ + E+++ RL D +Q TL + S F
Sbjct: 234 VGAEETF--AENLTSEVYMLRELDHIAEDVARRL--DKQQVAGKTVTLKIKYSNF 284
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 152/346 (43%), Gaps = 70/346 (20%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+D FY VEQ P+LRG P AV ++ G + A YEAR +GV+ +M AK CP
Sbjct: 1 MDAFYASVEQLDNPELRGKPIAVGGSSQR--GVVSAASYEARKFGVRSAMSSVIAKRNCP 58
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAET 137
I V KA YR ++ SI E S+DE YLD+T
Sbjct: 59 DIIFV-------KARFDRYREISQQIRSIFFEYTDLVEPLSLDEAYLDVT---------- 101
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
E+K GN S +I E+R
Sbjct: 102 --------------------ENKKGNPS----------------------ATMIAREIRE 119
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K + GK+
Sbjct: 120 KIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNPEEVLDFLEQLEIRKFYGV-GKV 178
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
LG+ T DL SE L + +G G + +N+ RGI EV+ + KS G+
Sbjct: 179 TAEKMYRLGIFTGKDLKSKSEAYLADHFG-KHGPYYYNVVRGIHESEVKPNRMRKSLGAE 237
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
++F + ++S L +L ++E + L+++K T+TL
Sbjct: 238 RTFS-----ENISSEIFMLEKLT-NIAEEIERRLQKSKVAGKTVTL 277
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 130/306 (42%), Gaps = 68/306 (22%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARN 61
A P SS R I H+D+D FY VE R+QP L+G P V W+G + A YEAR
Sbjct: 14 AEPMSS--RKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQ 67
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDE 121
+G+ +M AK +CPQ V VP YR +++ ++ R
Sbjct: 68 FGLHSAMSVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR----------- 109
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
Y DL + P SLDE D
Sbjct: 110 -YTDLIE----------PLSLDE-----------------------------AYLDVTRN 129
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
K + + E+R + ET T SAGIA NK LAK+AS KP Q +P V
Sbjct: 130 FKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAF 189
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L+++ARG
Sbjct: 190 LETLPLGKIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTD 247
Query: 302 GEEVQA 307
V+A
Sbjct: 248 ERPVEA 253
>gi|325955402|ref|YP_004239062.1| DNA polymerase IV [Weeksella virosa DSM 16922]
gi|323438020|gb|ADX68484.1| DNA polymerase IV [Weeksella virosa DSM 16922]
Length = 357
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 153/360 (42%), Gaps = 84/360 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P+LRG AV ++ G + YEAR YGV+ +M
Sbjct: 3 RKIIHIDMDAFYASVEQRDHPELRGKCIAVGSSSD--RGVVATASYEARRYGVRSAMPSA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
AK CPQ+ V K + ++Y+ +++ I A E S+DE YLD+T
Sbjct: 61 VAKRKCPQLIFV-------KGNFAAYKEVSNQIKEIFAEYTDLIEPLSLDEAYLDVT--- 110
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
H +
Sbjct: 111 -------------------------------------------------HNHPNIEYATT 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E++ ++ + T+ T SAG++ NK LAK+AS KP + + ++ LPI+K
Sbjct: 122 IAKEIKQKIKETTKLTASAGVSFNKFLAKIASDYRKPDGLFVITPKMAEKFVEELPIEKF 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G + ++ + + T DL K S +K+ +G +G + +NIAR I EV++ +
Sbjct: 182 YGIGKQTAQRMRM-MNIETGKDLKKLSLEKILREFG-KSGLYYYNIARAIDHREVKSHRI 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ-------NKRIAHTLTL 363
KS G+ +F LN L +EL +RL +E+ N+ T+TL
Sbjct: 240 RKSIGTENTFVTD------------LNDL-QELKKRLIPMIEEVWMWTVKNQTYGRTITL 286
>gi|56963934|ref|YP_175665.1| DNA polymerase IV DinB [Bacillus clausii KSM-K16]
gi|56910177|dbj|BAD64704.1| DNA polymerase IV DinB [Bacillus clausii KSM-K16]
Length = 374
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/447 (25%), Positives = 187/447 (41%), Gaps = 89/447 (19%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYG 63
P R I H+D+D F+ VE+R P LRG P + ++ GG G++A Y AR YG
Sbjct: 12 PHRDTTRKIIHIDMDAFFSSVEERDCPSLRGKPVIIAKHPRKTGGKGIVATANYVARQYG 71
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 122
+ +M EA + CP+ ++ + S+YR A ++ I+ R E SIDE
Sbjct: 72 IHSAMSAYEAYKRCPEGIFIE-------GNFSAYREASLQIRDIMHRYTDLVEPMSIDEA 124
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T ++K +K
Sbjct: 125 YLDVT------------------------------------ENKLNIK------------ 136
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
L+ ++ + +ET T SAG+++NK +AK+AS KPA T + +
Sbjct: 137 ----SATLLAKNIQQDIWRETRLTSSAGVSYNKFIAKIASDYRKPAGLTVITPEQALAFI 192
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LPI+K +G K + +EL + T DL + + L +G G + ARGI
Sbjct: 193 HQLPIEKFPGIGPKTSKKM-HELKIYTGADLYQMEQLDLIHHFG-KAGISYYRKARGIDN 250
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
+ + + KS G ++ P L + A+V L +L +E+ L +Q K I +
Sbjct: 251 KPLNLQRERKSVGKEHTYFQP--LTSEAAVLKELRRLAKEVEAVLERHGKQCKTIVVKIR 308
Query: 363 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
++S ++ +R+ S + P+R D+ +++ E FG +
Sbjct: 309 -----YRSFETLTRQT--SFTAPIR--------DSADIYSYAA-ELWDKFGQVDR----- 347
Query: 423 GWRITALSVSASKIVPVLSGTCSIMKY 449
I L V+A+K+ PV S+ Y
Sbjct: 348 --EIRLLGVTATKLEPVEHQLISLFPY 372
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 150/358 (41%), Gaps = 77/358 (21%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRS 67
AR I H+D+D FY VE R+Q LRG P V W+GG + A YEAR +G+ +
Sbjct: 3 AARKIIHIDMDAFYASVELREQLHLRGKPLVVA----WEGGRSVVCAASYEARRFGLHSA 58
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M A+ +CPQ V YR + I V+ T
Sbjct: 59 MPAATARRLCPQAVFV-------PPRFHLYREVSQQ---------------IHAVFRQHT 96
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D E P SLDE D H + L
Sbjct: 97 DLVE-------PLSLDE-----------------------------AYLDVTHNKQNLPY 120
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I +R ++L++T T SAGIA NK LAK+AS KP Q +P + L +LP+
Sbjct: 121 ASEIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPPPRIAQFLLTLPL 180
Query: 248 KKMKQLGGKLGTSLQ--NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
K+ +G K +LQ + LG+ T GDL K +L +G G L+++ARGI V
Sbjct: 181 GKIPGVGKK---TLQKMHALGLQTAGDLQKMQRGELVNLFG-RWGYRLYDLARGIDNRPV 236
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
Q + + + P L + V+H +L++ L + ++ + AHTLTL
Sbjct: 237 QPQRERLQISTEITLPQDLPLSKI--VRH-----LADLAKDLWAQAQRKQVQAHTLTL 287
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V + +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SHFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|374312136|ref|YP_005058566.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
gi|358754146|gb|AEU37536.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
Length = 382
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 152/384 (39%), Gaps = 77/384 (20%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYG 63
P + R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G
Sbjct: 16 PREAPLRKIVHVDMDAFYASVEQRDDPTLRGKPVVVA----WRGNRSVVCAASYEARRFG 71
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 122
V+ +M A+ +CP E + +P D + Y+ V I R E S+DE
Sbjct: 72 VRSAMPAITAERLCP--EAIFLP-----PDFTRYKAVSRAVREIFQRHTDLIEPLSLDEA 124
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T +K+G
Sbjct: 125 YLDVT------------------------------VNKNG-------------------- 134
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
L + + +R Q+ +E T SAG+A NK LAK+AS KP + + L
Sbjct: 135 --LPTATKVASAIRQQIREELSLTASAGVAPNKFLAKIASDWRKPNGLFVIQPGDLDTFL 192
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LP+ ++ +G T L N++G+ TVGDL F L+ +G G L +ARGI
Sbjct: 193 PPLPVGRIPGVGKVTETRL-NQVGIQTVGDLRNFELATLEAQFG-RYGLRLHELARGIDH 250
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT-- 360
V KS + +F L +L L+E++ + + R+A T
Sbjct: 251 NPVVPDRPTKSISAEDTFQRDIPLSET-------EELIRRLAEKVWTASRRESRMARTVV 303
Query: 361 LTLHASAFKSSDSDSRKKFPSKSC 384
L L S F P SC
Sbjct: 304 LKLKTSEFNILTRSHTPLVPPASC 327
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|154281677|ref|XP_001541651.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
gi|150411830|gb|EDN07218.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
Length = 1162
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 50/352 (14%)
Query: 9 SGAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SGAR I HVD D F+ V RK P+L P A+ + G + + Y AR++G+K
Sbjct: 358 SGARRYILHVDFDSFFAAVSLRKHPELVDQPVAIA-HGTGPGSEIASCNYPARSFGIKNG 416
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 126
M A ++CP ++++ D ++Y A + IL+ + SIDE +D+
Sbjct: 417 MWMKGALQMCPNLKVLPY-------DFAAYEEASEKFYDVILSIDAVVQSVSIDEALVDI 469
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHRDKLL 185
T+ + + + G D S+ ++ W + AD
Sbjct: 470 TNLCQDAVGSS------------------------GRDISEGSI--WREQEKADE----- 498
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I +LR V ++T S GI N + A++A KPA Q + +V + +L
Sbjct: 499 -----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTL 553
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
+K + + LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 554 TVKDLPGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEV 612
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 613 GFHPPRKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|335996993|ref|ZP_08562910.1| DNA polymerase IV [Lactobacillus ruminis SPM0211]
gi|335352063|gb|EGM53554.1| DNA polymerase IV [Lactobacillus ruminis SPM0211]
Length = 366
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 134/316 (42%), Gaps = 64/316 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
AR I HVD+DCFY +E R KL G P + + GG G+++ Y AR++GV +M
Sbjct: 2 ARKIIHVDMDCFYASIEVRDNQKLAGKPVVIARDPRHSGGKGVVSTANYVARSFGVHSAM 61
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+EA +CP + V VP D YR E+ I + E + DE YLD+T
Sbjct: 62 NANEALNLCP--DAVFVP-----PDFKKYRRVSKEIHEIFHEYTDKIEPIAFDEAYLDVT 114
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LGL+S
Sbjct: 115 ECK------------------------LGLKS---------------------------- 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+I ++ ++ ++T TCS GI++NK LAKLAS KP T V L L I
Sbjct: 123 ATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALDFLLPLKI 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K + +G K + +ELGV DL SE L +G G + + RGI EV+
Sbjct: 183 EKFRGVGRKTVIKM-HELGVYNGYDLYGLSELDLIHYFG-KMGHFFYEQVRGIDDREVEW 240
Query: 308 RLLPKSHGSGKSFPGP 323
+ KS G ++F P
Sbjct: 241 QRERKSFGVERTFNMP 256
>gi|323341493|ref|ZP_08081734.1| DNA-directed DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|417974490|ref|ZP_12615308.1| DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|323091104|gb|EFZ33735.1| DNA-directed DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|346329151|gb|EGX97452.1| DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
Length = 366
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 134/316 (42%), Gaps = 64/316 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
AR I HVD+DCFY +E R KL G P + + GG G+++ Y AR++GV +M
Sbjct: 2 ARKIIHVDMDCFYASIEVRDNQKLAGKPVVIARDPRHSGGKGVVSTANYVARSFGVHSAM 61
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+EA +CP + V VP D YR E+ I + E + DE YLD+T
Sbjct: 62 NANEALNLCP--DAVFVP-----PDFKKYRRVSKEIHEIFHEYTDKIEPIAFDEAYLDVT 114
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LGL+S
Sbjct: 115 ECK------------------------LGLKS---------------------------- 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+I ++ ++ ++T TCS GI++NK LAKLAS KP T V L L I
Sbjct: 123 ATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALDFLLPLKI 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K + +G K + +ELGV DL SE L +G G + + RGI EV+
Sbjct: 183 EKFRGVGRKTVIKM-HELGVYNGYDLYGLSELDLIHYFG-KMGHFFYEQVRGIDDREVEW 240
Query: 308 RLLPKSHGSGKSFPGP 323
+ KS G ++F P
Sbjct: 241 QRERKSFGVERTFNMP 256
>gi|384215689|ref|YP_005606855.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354954588|dbj|BAL07267.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 368
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 136/311 (43%), Gaps = 66/311 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P LRG P AV E G + A YEAR +GV+ +M
Sbjct: 17 RKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSRER--GVVAAASYEARKFGVRSAMPSV 74
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
AK CP + V K Y+ ++ I A E S+DE YLD+T+
Sbjct: 75 TAKRQCPDLIFV-------KPRFEVYKAVSQQIREIFAEHTPTIEPLSLDEAYLDVTENL 127
Query: 131 EAM-LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ + LA RD LA
Sbjct: 128 QGIPLA---------------------------------------------RDVALA--- 139
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+R ++ + T SAGI++NK LAKLAS KP Q + +++LP+ K
Sbjct: 140 -----IRAKIKEVTGLNASAGISYNKFLAKLASDHRKPNGQYVITPEMGPAFVENLPVGK 194
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+G G + N LG+ T D+ S + +Q ++G GT+ ++I+RG+ EV+A
Sbjct: 195 FHGIGPATGAKM-NALGLYTGLDMRNQSLEFMQTNFG-KAGTYYYSISRGVDNREVRADR 252
Query: 310 LPKSHGSGKSF 320
+ KS G+ +F
Sbjct: 253 VRKSVGAENTF 263
>gi|289806282|ref|ZP_06536911.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 288
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|357639281|ref|ZP_09137154.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|418417287|ref|ZP_12990483.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
gi|357587735|gb|EHJ57143.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|410871763|gb|EKS19709.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
Length = 364
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 156/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R PKL G P + + GG G+++ Y AR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFASVEERDNPKLIGKPVVIGRDPRETGGRGVVSTCNYVARQFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA + CPQ + + + Y+ G EV +I R E SIDE YLD+T
Sbjct: 71 SSKEAFDKCPQAIFIS-------GNYAKYKAVGLEVRAIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + D ++ +K
Sbjct: 124 E--------------------------------NKLDIQSAIK----------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + E TCSAG+++NK LAKLAS KP T V + L +LPI
Sbjct: 135 ---IAKLIQHDIWNELHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDAQEFLKALPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV T DLL SE L + +G G L+ ARGI V+
Sbjct: 192 EKFHGVGKKSVEKL-HEMGVFTGEDLLNISEMTLIDQFG-CFGYDLFRKARGIHYSPVKP 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S ER+ LE+N +I L L
Sbjct: 250 NRIRKSIGSERTY---------AKLLYQDEDVKTEISHNVERVVKTLEKNGKIGKVLVL 299
>gi|114566886|ref|YP_754040.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337821|gb|ABI68669.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 393
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 153/360 (42%), Gaps = 71/360 (19%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H DLD F+ VEQ P LRG P VV + G + YEAR +G++ +M +A
Sbjct: 7 ILHCDLDAFFASVEQLDNPSLRGKPV-VVGGSMHSRGVVSTCSYEARKFGIRSAMPIAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAAEA 132
+CPQ + V + R Y +V SIL+R E SIDE +LD++
Sbjct: 66 YRLCPQAVFLPVNMPR-------YLEISKQVFSILSRYSPIKEIISIDEAFLDIS----- 113
Query: 133 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 192
G S G+ K G LI
Sbjct: 114 -----------------------GCSSLYGSPEK--------------------IGCLI- 129
Query: 193 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 252
QV E T S GI++NK LAKLAS M+KP + S LL LP+ ++
Sbjct: 130 ---NEQVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELLRPLPVSRIWG 186
Query: 253 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 312
+G K SL ++LG+ T+GD+ + L++ G + G W +A GI V+ K
Sbjct: 187 IGQKTEQSL-DKLGIKTIGDIQDSPPEWLEDKIG-SAGRLFWELAHGIDRRAVEPEHERK 244
Query: 313 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT--LHASAFKS 370
S G ++F P + A +L +L + + LC L Q A T+T L S FK+
Sbjct: 245 SLGREETF--PEDINDTA----YLEKLIVQFAAELCRKLRQEALFAATITIKLRYSNFKT 298
>gi|407690031|ref|YP_006813615.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
gi|407321206|emb|CCM69808.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
Length = 378
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 137/316 (43%), Gaps = 66/316 (20%)
Query: 8 SSGARI--IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
+ G R+ I H+D+D FY VEQR P+LRG P A V Y E + G + A YEAR +GV
Sbjct: 20 TPGGRVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPEAR-GVVAAASYEARKFGVH 77
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+M AK CP EL+ VP YR ++ +I A E S+DE YL
Sbjct: 78 SAMPSVTAKRKCP--ELIFVP-----HRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T E LK L E
Sbjct: 131 DVT--------------------ENLKGLRLATE-------------------------- 144
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
I E+R ++ ET T SAG+++NK LAK+AS KP + + +
Sbjct: 145 ------IAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGPEFVQA 198
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP+KK +G ++ LG+ T DL LQ+ +G +G + + IARGI E
Sbjct: 199 LPVKKFHGVGPATAEKMKR-LGIETGADLKSRDLAFLQQHFG-KSGPYFYWIARGIDERE 256
Query: 305 VQARLLPKSHGSGKSF 320
V+ + KS G+ +F
Sbjct: 257 VKPDRIRKSIGAEDTF 272
>gi|237730217|ref|ZP_04560698.1| DNA polymerase IV [Citrobacter sp. 30_2]
gi|365104768|ref|ZP_09334160.1| DNA polymerase IV [Citrobacter freundii 4_7_47CFAA]
gi|226905756|gb|EEH91674.1| DNA polymerase IV [Citrobacter sp. 30_2]
gi|363643709|gb|EHL83013.1| DNA polymerase IV [Citrobacter freundii 4_7_47CFAA]
Length = 351
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ + +Y+ A ++ +I +R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRYE--AYKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDS- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+H G L
Sbjct: 113 ---------------------THCHG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLRTLPLGKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T D+ K+ L + +G G LW ++GI +V L
Sbjct: 182 PGV-GKVSAAKLESMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDERDVNNDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + W CE + ERL +LE+
Sbjct: 240 RKSVGVERTL--------AEDIHEWSE--CEAIIERLYPELERR 273
>gi|333904386|ref|YP_004478257.1| DNA polymerase IV [Streptococcus parauberis KCTC 11537]
gi|333119651|gb|AEF24585.1| DNA polymerase IV [Streptococcus parauberis KCTC 11537]
Length = 364
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE R PKL+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEVRDNPKLKGKPVVIAKDPRETGGRGVVSTCSYEAREFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + S Y+ G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYSKYKEIGLQIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I +++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 ALKIAKLIQLDIWTELHLTCSAGVSYNKFLAKLASDYQKPRGLTLVLPDDALSFLSDLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++GV DLL +E +L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HDMGVNKGADLLLLTEMQLIDQFG-RFGYDLYRKARGISQSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRIRKSIGSERTY 262
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 129/298 (43%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W+G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLQGLPVVVA----WEGARSVICAASYEARRFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
AK +CPQ V VP + S YR+ ++ I R TD
Sbjct: 60 AATAKRLCPQA--VFVP-----PNFSLYRSVSRQIHGIFRRH---------------TDL 97
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE + +H + D
Sbjct: 98 VE-------PLSLDEAYLDVTLNHQNIPYASD---------------------------- 122
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I +R +L ET T SAG+A NK LAK+AS NKP Q +P V+ L LP+ K
Sbjct: 123 -IARSIRADILAETGLTASAGVAPNKFLAKIASDWNKPNGQFVLPPQKVEAFLTGLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ + GK+ LG+ TVGDL + S +L +G G L ++A GI V+A
Sbjct: 182 IPGV-GKVTRQKMQRLGMNTVGDLRRHSPGELANLFG-KWGYRLHDLAYGIDNRPVKA 237
>gi|295673426|ref|XP_002797259.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282631|gb|EEH38197.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1160
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 159/349 (45%), Gaps = 51/349 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R + HVD D F+ V RK P+L P A+ + G + + Y AR++G+K M
Sbjct: 365 RYVMHVDFDSFFAAVSIRKHPELADQPVAIA-HGTGPGSEIASCNYPARSFGIKNGMWMK 423
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
A ++CP ++++ D ++Y A +L + G + SIDE +D+T+
Sbjct: 424 GALQMCPHLKVLPY-------DFAAYEEASRNFYDVLLSIDGIVQSVSIDEALVDITNIC 476
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
LD A S +G+ S+ ++ + D
Sbjct: 477 -----------LD-----AGGSDGIGI-------SEGSIYREQAKADE------------ 501
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +LR V ++T S GI N + A++A KPA Q + +V+ + L +K +
Sbjct: 502 IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDL 561
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++
Sbjct: 562 PGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVP 620
Query: 311 PKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 357
KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 621 RKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 665
>gi|424107414|ref|ZP_17842022.1| DNA polymerase IV [Escherichia coli 93-001]
gi|390670609|gb|EIN47151.1| DNA polymerase IV [Escherichia coli 93-001]
Length = 343
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 144/337 (42%), Gaps = 73/337 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCP 78
+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++CP
Sbjct: 1 MDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLCP 59
Query: 79 QIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAET 137
+ L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 HLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH------ 106
Query: 138 PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 197
C A LI E+R
Sbjct: 107 ------------------------------------CHGSA----------TLIAQEIRQ 120
Query: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 257
+ E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 121 TIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKV 179
Query: 258 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 317
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 SAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVE 238
Query: 318 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 RTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFLAQVEMRDNPKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|336119781|ref|YP_004574558.1| DNA polymerase IV [Microlunatus phosphovorus NM-1]
gi|334687570|dbj|BAK37155.1| DNA polymerase IV [Microlunatus phosphovorus NM-1]
Length = 438
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 134/315 (42%), Gaps = 41/315 (13%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D +RII HVD+D FY VE R++P+LRG P V Y G +++ YEAR +G++
Sbjct: 8 DDRASRIIMHVDMDAFYASVELRRRPELRGRPVIVGGYPR---GVVLSATYEARAFGIRS 64
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLD 125
M +A + P + D SY + + ++ + E ASIDE YLD
Sbjct: 65 GMASGQAVRLAPNAVFLD-------PDFDSYTAVSAGIAAVFRSVTSVVESASIDEAYLD 117
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T A + + G + A + E+
Sbjct: 118 ITGALRMFGSRMGMGMGMGMGVGRSGGEGWG-------QTPAGIGEY------------- 157
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
+R V E + CS GI K +AK+AS KP VP V+ L L
Sbjct: 158 ---------VRAVVADEQQIACSVGIGPTKFVAKVASKQAKPDGLVDVPPDRVEAFLHPL 208
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P++ M +G K L N LG+ T+G+L L+ ++G + G L +A G G +V
Sbjct: 209 PVEAMWGVGAKTAERLHN-LGINTIGELAHTPRGGLRRTFGPHAGGMLRELAWGRDGRQV 267
Query: 306 QARLLPKSHGSGKSF 320
A +S GS ++F
Sbjct: 268 VASEPERSIGSQETF 282
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|168240052|ref|ZP_02664984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340115|gb|EDZ26879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
Length = 351
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 168/412 (40%), Gaps = 77/412 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-IGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT-LTLHASAFKS 370
KS G ++ + W + CE + E L +LE+ I L + K
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIVKPDLLIARQGVKL 290
Query: 371 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
+D ++ PL +ED + E G GV+ G H +
Sbjct: 291 KFNDFQQTTQEHVWPLLN-----KEDLITTARKTWDERRGERGVRLVGLHVT 337
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|417536912|ref|ZP_12189937.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353669430|gb|EHD06335.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 300
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|334318683|ref|YP_004551242.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099110|gb|AEG57119.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length = 378
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 137/316 (43%), Gaps = 66/316 (20%)
Query: 8 SSGARI--IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
+ G R+ I H+D+D FY VEQR P+LRG P A V Y E + G + A YEAR +GV
Sbjct: 20 TPGGRVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPEAR-GVVAAASYEARKFGVH 77
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+M AK CP EL+ VP YR ++ +I A E S+DE YL
Sbjct: 78 SAMPSVTAKRKCP--ELIFVP-----HRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T E LK L E
Sbjct: 131 DVT--------------------ENLKGLRLATE-------------------------- 144
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
I E+R ++ ET T SAG+++NK LAK+AS KP + + +
Sbjct: 145 ------IAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGPEFVQA 198
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP+KK +G ++ LG+ T DL LQ+ +G +G + + IARGI E
Sbjct: 199 LPVKKFHGVGPATAEKMKR-LGIETGADLKSRDLAFLQQHFG-KSGPYFYWIARGIDERE 256
Query: 305 VQARLLPKSHGSGKSF 320
V+ + KS G+ +F
Sbjct: 257 VKPDRIRKSIGAEDTF 272
>gi|390456482|ref|ZP_10242010.1| DNA polymerase IV [Paenibacillus peoriae KCTC 3763]
Length = 426
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 162/386 (41%), Gaps = 73/386 (18%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQP-KLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
G R+I HVD++ FY V ++P K +GLPTAV +E + G ++ YEAR G+ M
Sbjct: 11 GGRVILHVDMNAFYCSVHAAEEPEKYKGLPTAVAGSSELRRGVIVTCSYEARRLGISTGM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLT 127
+A+ +CPQ+ ++Q D YR +SI + E SIDE YLD+T
Sbjct: 71 VVQQARRICPQLIVIQ-------PDFHLYRRYSKAFMSIAYSYTPMLEATSIDECYLDIT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + TP E +E+ ND
Sbjct: 124 GSKQ---FGTPLEIAEEIQRRV-------------ND----------------------- 144
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
E CS G+A NK+LAK+AS + KP + + V G+L +LP
Sbjct: 145 --------------ELGLPCSIGVAPNKLLAKMASDLKKPRGISVLRLRDVPGILWNLPC 190
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ +G K L ++ + T+G L K E L +G TG+WL A GI+ V
Sbjct: 191 SQLFGVGRKTAEKLL-QMNIRTIGQLAKADEQMLIGVFGV-TGSWLKLAANGINHSPVST 248
Query: 308 RLLP-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER------LCSDLEQNKRIAHT 360
P KS G + P + + Q L + ++++ R L ++ R
Sbjct: 249 EREPNKSIGHTTTL--PMDVVKLEEAQRVLLNISDQVARRLRRHGMLAGGIQLTIRTPDM 306
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
T S +S+ ++S + ++C L
Sbjct: 307 KTFTRSQIRSTPTESAEDIYKEACAL 332
>gi|328957028|ref|YP_004374414.1| DNA polymerase IV [Carnobacterium sp. 17-4]
gi|328673352|gb|AEB29398.1| DNA polymerase IV [Carnobacterium sp. 17-4]
Length = 377
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 165/379 (43%), Gaps = 70/379 (18%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYG 63
P R I H+D+D F+ VE+R+ P L+G P + ++ + GG G++A YEAR YG
Sbjct: 11 PKRDTTRKIIHIDMDAFFASVEERENPDLKGKPVIIARHPKETGGKGVVATANYEARKYG 70
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 122
V +M +A E+CP + G DL YR +EV SI R E S+DE
Sbjct: 71 VHSAMSAQKAYELCPHGNFIS-----GHYDL--YREISAEVRSIFERYTDTIEPLSLDEA 123
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T + H N + AT L + D
Sbjct: 124 YLDVT----------------------VNKH---------NLTSATYIAKLIQRD----- 147
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+ +E + T SAG+++NK +AKLAS +KPA T +P L
Sbjct: 148 ----------------IWQEVQLTSSAGVSYNKFIAKLASDYHKPAGITVIPPDEALDFL 191
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LPI+K +G K + ++L + T DL + +E +L + +G G L+ RGI
Sbjct: 192 RKLPIEKFYGVGKKTVEKM-HDLSIYTGEDLFQKNEMELIQRFG-RMGYSLYRKVRGIDN 249
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 362
V+ KS G ++ K + + Q L++L ++ ++ L++N++ T+
Sbjct: 250 SPVRVSRERKSVGRELTYG-----KNLTTEQEVLSEL-RFIANKVQLSLQKNQKHGKTVV 303
Query: 363 LHASAFKSSDSDSRKKFPS 381
L + R P+
Sbjct: 304 LKVRYSNFETATKRLTLPN 322
>gi|429092434|ref|ZP_19155065.1| DNA polymerase IV [Cronobacter dublinensis 1210]
gi|426742829|emb|CCJ81178.1| DNA polymerase IV [Cronobacter dublinensis 1210]
Length = 395
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 144/342 (42%), Gaps = 73/342 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRE-RRGVISTANYPARKYGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASAHIRDIFSRYTPLIEPLSLDEAYLDVTDS- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
H G L
Sbjct: 113 ---------------------PHCYG------------------------------SATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E+R + E + T SAG+A K LAK+AS +NKP Q + V L +LP+ K+
Sbjct: 122 MAREIRQTIFNELQLTASAGVAPIKFLAKIASDLNKPNGQYVITPEEVPAFLRTLPLGKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L++ LG+ T D+ K L + +G G LW ++GI E+ +
Sbjct: 182 PGVGKVTAAKLES-LGLRTCEDVQKSDLAALLKRFG-KFGRVLWERSQGIDDREISSDRQ 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 352
KS G ++ + W CE + ERL +LE
Sbjct: 240 RKSVGVERTL--------AEDIHDWAE--CEAIIERLYPELE 271
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|195453784|ref|XP_002073941.1| GK14382 [Drosophila willistoni]
gi|194170026|gb|EDW84927.1| GK14382 [Drosophila willistoni]
Length = 735
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 172/391 (43%), Gaps = 40/391 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR P + Q N ++ Y AR GV + M
Sbjct: 15 RTIVHLDMDYFYAQVEEIRDPSLRQKPLGIQQKN-----IVVTCNYVARAKGVHKLMLIS 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
+A+ CP + LV DL+ YR ++ +L E+ DE ++D++
Sbjct: 70 DAQRRCPDLVLV------NGEDLAPYRLMSQKIFDLLLNYTPAVEKLGFDENFMDVS--- 120
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
L E E E E+ H+ D + + LC C + LA G
Sbjct: 121 --ALVELRQEHAAEAQEKPPVGHLYP-------DDGTLLTDCLCGCA-----QRLAIGSR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGIA+NK+LAKL +KP QQT + S + + L +++
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSSHAEEFMRELNDLQR 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K + LQ E G+ +V L + D +++ +GF T T L ++A G V+
Sbjct: 227 VTGIGQKTLSLLQ-EAGINSVEQLQQCDMDMMRKKFGFETATKLRDLAYGRDVSAVRPTG 285
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PKS G + + + + V+ L L E++ D I L + K
Sbjct: 286 KPKSIGMEDAC---KPISISSDVEDKFRMLLMRLVEQVAEDGRIPIAIKVVLRKFDAQKK 342
Query: 370 SSDSDSRKK------FPSKSCPLRYGTAKIQ 394
SS ++++ F + C GT ++Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCSGETGTGRVQ 373
>gi|417324194|ref|ZP_12110519.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353579640|gb|EHC41127.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
Length = 297
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHTVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|296283336|ref|ZP_06861334.1| DNA polymerase IV [Citromicrobium bathyomarinum JL354]
Length = 401
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 139/321 (43%), Gaps = 66/321 (20%)
Query: 2 PVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEAR 60
P R ++ R I HVD+D F+ VEQR P+LRG P AV G G++A YEAR
Sbjct: 30 PEDRGEAPPTRKIIHVDMDAFFASVEQRDNPELRGKPVAV---GGASGRGVVAAASYEAR 86
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASI 119
+GVK +M AK +CP + V K+ +YR A ++ +I E S+
Sbjct: 87 KFGVKSAMPSVTAKRLCPDLIFV-------KSRFDAYREASDQIRAIFRHHTDLVEPLSL 139
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE YLD+T + LG+ S AT + R
Sbjct: 140 DEAYLDVT------------------------VNKLGIAS-------ATQVAQMIR---- 164
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
++ +T T SAG+++NK LAKLAS NKP +
Sbjct: 165 -----------------QEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGA 207
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
+ +LPI++ +G + G LG+ T DL L + +G + G +L+ ARG
Sbjct: 208 AFVQTLPIRRFHGVGPR-GEEKMARLGIATGADLAAKDAAWLAQHFG-SFGDYLYRAARG 265
Query: 300 ISGEEVQARLLPKSHGSGKSF 320
I V+A + KS G ++F
Sbjct: 266 IDDRPVRANRIRKSVGGERTF 286
>gi|21355641|ref|NP_649772.1| DNApol-iota, isoform A [Drosophila melanogaster]
gi|24644984|ref|NP_731214.1| DNApol-iota, isoform B [Drosophila melanogaster]
gi|7298996|gb|AAF54198.1| DNApol-iota, isoform A [Drosophila melanogaster]
gi|10440506|dbj|BAB15800.1| dpol-iota [Drosophila melanogaster]
gi|15291835|gb|AAK93186.1| LD29090p [Drosophila melanogaster]
gi|23175897|gb|AAN14307.1| DNApol-iota, isoform B [Drosophila melanogaster]
gi|220945914|gb|ACL85500.1| DNApol-iota-PA [synthetic construct]
gi|220955602|gb|ACL90344.1| DNApol-iota-PA [synthetic construct]
Length = 737
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 171/391 (43%), Gaps = 40/391 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR + Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E A V E L+ + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEALLRPPVGHTYPADGTPLSN------CDCGCAQR---LAIGTR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGIA+NK+LAKL ++P QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 227 VTGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSLVRPSG 285
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 370 SSDSDSRKK------FPSKSCPLRYGTAKIQ 394
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|16759308|ref|NP_454925.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16763696|ref|NP_459311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29142919|ref|NP_806261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|161615517|ref|YP_001589482.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167553101|ref|ZP_02346851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167993331|ref|ZP_02574426.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|197263932|ref|ZP_03164006.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|213162131|ref|ZP_03347841.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425140|ref|ZP_03357890.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213649644|ref|ZP_03379697.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|374979809|ref|ZP_09721141.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378443760|ref|YP_005231392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378448629|ref|YP_005235988.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698281|ref|YP_005180238.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378960717|ref|YP_005218203.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|378982854|ref|YP_005246009.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378987715|ref|YP_005250879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699532|ref|YP_005241260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383495126|ref|YP_005395815.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|416424584|ref|ZP_11691765.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416430856|ref|ZP_11695200.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439979|ref|ZP_11700560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416444663|ref|ZP_11703896.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416453868|ref|ZP_11709942.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458465|ref|ZP_11712984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416464995|ref|ZP_11716575.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416477004|ref|ZP_11721348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416484247|ref|ZP_11724043.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416501678|ref|ZP_11732268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416542219|ref|ZP_11751389.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416576567|ref|ZP_11769149.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416583841|ref|ZP_11773597.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416595190|ref|ZP_11781004.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596485|ref|ZP_11781377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416605634|ref|ZP_11787066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416610348|ref|ZP_11790020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416620916|ref|ZP_11796019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416632850|ref|ZP_11801564.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416639881|ref|ZP_11804795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416648380|ref|ZP_11809025.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416661634|ref|ZP_11815626.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416671044|ref|ZP_11820533.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416673706|ref|ZP_11821029.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416697864|ref|ZP_11828234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416706698|ref|ZP_11831887.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416713112|ref|ZP_11836754.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416719557|ref|ZP_11841413.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416723694|ref|ZP_11844360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416734275|ref|ZP_11850930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416740195|ref|ZP_11854283.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416745392|ref|ZP_11857324.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416759363|ref|ZP_11864224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416764507|ref|ZP_11868111.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416766916|ref|ZP_11869532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418485151|ref|ZP_13054135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418490188|ref|ZP_13056740.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418493277|ref|ZP_13059745.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418497978|ref|ZP_13064393.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504273|ref|ZP_13070631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418508095|ref|ZP_13074403.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418514207|ref|ZP_13080418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418525494|ref|ZP_13091474.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|421884459|ref|ZP_16315674.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422024443|ref|ZP_16370923.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029466|ref|ZP_16375725.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427545521|ref|ZP_18926234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427561638|ref|ZP_18930997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427600223|ref|ZP_18940314.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427602709|ref|ZP_18940599.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427627117|ref|ZP_18945508.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427650396|ref|ZP_18950263.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659669|ref|ZP_18955216.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664787|ref|ZP_18959964.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427695319|ref|ZP_18964870.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|437839681|ref|ZP_20846302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|54036996|sp|P63990.1|DPO4_SALTI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040957|sp|P63989.1|DPO4_SALTY RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027679|sp|A9MY13.1|DPO4_SALPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|25300621|pir||AG0542 hypothetical protein DinP (DNA damage-inducible protein) STY0358
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16418815|gb|AAL19270.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16501599|emb|CAD08783.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29138551|gb|AAO70121.1| hypothetical protein DinP [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161364881|gb|ABX68649.1| hypothetical protein SPAB_03289 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197242187|gb|EDY24807.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|205322378|gb|EDZ10217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205328613|gb|EDZ15377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261245539|emb|CBG23333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992007|gb|ACY86892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156929|emb|CBW16410.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911282|dbj|BAJ35256.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224974|gb|EFX50035.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322614606|gb|EFY11535.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620125|gb|EFY16997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623419|gb|EFY20258.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629283|gb|EFY26062.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632003|gb|EFY28757.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637259|gb|EFY33961.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642456|gb|EFY39058.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322646290|gb|EFY42804.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652441|gb|EFY48795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653397|gb|EFY49730.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660455|gb|EFY56691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664607|gb|EFY60800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669340|gb|EFY65490.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670886|gb|EFY67019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678875|gb|EFY74930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681904|gb|EFY77929.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322688030|gb|EFY83996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323128631|gb|ADX16061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323194385|gb|EFZ79580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197800|gb|EFZ82932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203404|gb|EFZ88429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323210380|gb|EFZ95272.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214622|gb|EFZ99373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223178|gb|EGA07521.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323224851|gb|EGA09114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230055|gb|EGA14175.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233793|gb|EGA17882.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238513|gb|EGA22571.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244201|gb|EGA28210.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246361|gb|EGA30344.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251987|gb|EGA35850.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257984|gb|EGA41663.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259919|gb|EGA43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265067|gb|EGA48566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272630|gb|EGA56037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|332987262|gb|AEF06245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|366056129|gb|EHN20455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366065452|gb|EHN29642.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366067037|gb|EHN31193.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366071115|gb|EHN35215.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366073755|gb|EHN37819.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366080027|gb|EHN44008.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366080401|gb|EHN44373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366829374|gb|EHN56250.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372206263|gb|EHP19767.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|374354589|gb|AEZ46350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|379986173|emb|CCF87947.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380461947|gb|AFD57350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|414023614|gb|EKT07037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414023926|gb|EKT07336.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414025152|gb|EKT08487.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414025463|gb|EKT08787.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414037582|gb|EKT20346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414042252|gb|EKT24790.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414051986|gb|EKT34061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053392|gb|EKT35392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414057905|gb|EKT39634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414061945|gb|EKT43317.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067531|gb|EKT47871.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|435297410|gb|ELO73693.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 351
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|322831681|ref|YP_004211708.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|384256795|ref|YP_005400729.1| DNA polymerase IV [Rahnella aquatilis HX2]
gi|321166882|gb|ADW72581.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|380752771|gb|AFE57162.1| DNA polymerase IV [Rahnella aquatilis HX2]
Length = 352
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 161/413 (38%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR +GV +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRD-RRGVISTANYPARKFGVHSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CP ++++ + +Y+ A + + I AR E S+DE YL
Sbjct: 61 MALKLCPHLKVI-------PGRMEAYKEASNHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D H + L
Sbjct: 108 ----------------------------------------------DVSHATQCNGSATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAAEIRQAIFDEINLTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFLQDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ E G+ T GD+ ++ KL + +G G LW +GI E+ L
Sbjct: 182 PGVGKVTAQRLQ-EQGLITCGDVQRYDLAKLLKRFG-KFGRVLWERCQGIDEREISPERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAFK 369
KS G ++ + W + C L ERL +L+ R++ L + K
Sbjct: 240 RKSVGVERTL--------AEDIHSW--EECVSLIERLYPELQTRLSRVSPDLRIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ +ED + + + G GV+ G H +
Sbjct: 290 LKFHDFQQTTQEHVWPVLN-----KEDLLKVAREAWEQRRGGRGVRLVGLHVT 337
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|418791236|ref|ZP_13346999.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418793736|ref|ZP_13349462.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418799685|ref|ZP_13355351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418869364|ref|ZP_13423800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|392755325|gb|EJA12235.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392763416|gb|EJA20223.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392764003|gb|EJA20809.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392836512|gb|EJA92094.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
Length = 351
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|224026553|ref|ZP_03644919.1| hypothetical protein BACCOPRO_03310 [Bacteroides coprophilus DSM
18228]
gi|224019789|gb|EEF77787.1| hypothetical protein BACCOPRO_03310 [Bacteroides coprophilus DSM
18228]
Length = 364
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 143/338 (42%), Gaps = 64/338 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P+L+G P AV K G + A YEAR +GV+ +M
Sbjct: 5 RKIIHIDMDAFYASVEQRNHPELKGKPIAVGHAE--KRGVVAAASYEARKFGVRSAMPSQ 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A ++CPQ+ V+ + +Y+ A I +++ D TD E
Sbjct: 63 QAIKICPQLIFVE-------GHMETYKQVS---------------AQIHQIFHDYTDLIE 100
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K + V I
Sbjct: 101 -------PISLDE-----------------------------AFLDVTENKKGIELAVDI 124
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E++ ++ +E SAGI++NK LAK+AS KP T+ + +D LPI++
Sbjct: 125 AREIKRRIREELHLIASAGISYNKFLAKVASDYRKPDGLCTIHPKQAQEFIDRLPIEQFW 184
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + + LG+ L + S D L +G G + ARGI V+A +
Sbjct: 185 GVGPVTAKKMHS-LGIYNGATLRQCSLDMLTRQFG-KAGKLYYEFARGIDHRPVEAVRIR 242
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 349
KS G + L++ ++ L + EL+ERL +
Sbjct: 243 KSIGCEHTLEKDITLRSSVIIE--LYHVARELTERLSA 278
>gi|188025344|ref|ZP_02958315.2| hypothetical protein PROSTU_00018 [Providencia stuartii ATCC 25827]
gi|188023887|gb|EDU61927.1| DNA polymerase IV [Providencia stuartii ATCC 25827]
Length = 359
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 147/359 (40%), Gaps = 78/359 (21%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D R I H+D+DCFY +E R P LR +P AV + + G + YEAR YGV
Sbjct: 5 DQIAMRKIIHIDMDCFYAAIEMRDDPSLRNIPIAVGGSAD-RRGVISTANYEARRYGVHS 63
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLD 125
+M A +CP +++V ++ Y+ + I ++ E S DE YLD
Sbjct: 64 AMSTAVALRLCPHLKVV-------PGRMALYKETSLHIHKIFSQYTDLIEPLSWDEAYLD 116
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+++ C+ H
Sbjct: 117 VSE-----------------------------------------------CEHYH----- 124
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
LI +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SL
Sbjct: 125 GSATLIAQAIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSL 184
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P+KK+ +G L + +G+ T GD+ + L + G G LW GI V
Sbjct: 185 PLKKIPGVGKVTAQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSV 242
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 358
L KS G ++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 243 NPDRLRKSVGVERTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 292
>gi|365877904|ref|ZP_09417398.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442586482|ref|ZP_21005311.1| DNA polymerase IV [Elizabethkingia anophelis R26]
gi|365754447|gb|EHM96392.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442563801|gb|ELR81007.1| DNA polymerase IV [Elizabethkingia anophelis R26]
Length = 363
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 136/309 (44%), Gaps = 63/309 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQ P+L+G P AV + G + A YEAR YGV+ +M
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPELKGKPIAVGGVHR---GVVAAASYEARQYGVRSAMPSK 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A++ CP + V+ R K R E + E S+DE YLD+T+ +
Sbjct: 65 TAQQKCPNLIFVRPRFLRYKEISQQIRQIFYEYTDL------VEPLSLDEAYLDVTENKK 118
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
G+ES + I
Sbjct: 119 ------------------------GIESANQ----------------------------I 126
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+ +V L+ LPI+K
Sbjct: 127 ALEIRKKIFEKTGLTASAGISVNKFLAKVASDINKPNGQKTIHPQNVLSFLEELPIEKFY 186
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK+ + N L + DL S ++L +G +G +N+ RGI EV+ +
Sbjct: 187 GI-GKVTANKMNTLSIYKGKDLKNKSLEELVLLFG-KSGKHYYNVVRGIQYSEVKPHRIA 244
Query: 312 KSHGSGKSF 320
KS ++F
Sbjct: 245 KSVAVEETF 253
>gi|456369572|gb|EMF48472.1| DNA polymerase IV [Streptococcus parauberis KRS-02109]
gi|457094640|gb|EMG25159.1| DNA polymerase IV [Streptococcus parauberis KRS-02083]
Length = 364
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE R PKL+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEVRDNPKLKGKPVVIAKDPRETGGRGVVSTCSYEAREFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + S Y+ G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYSKYKEIGLQIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I +++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 ALKIAKLIQLDIWTELHLTCSAGVSYNKFLAKLASDYQKPRGLTLVLPDDALSFLSDLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++GV DLL +E +L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HDMGVYKGADLLLLTEMQLIDQFG-RFGYDLYRKARGISQSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRIRKSIGSERTY 262
>gi|417388496|ref|ZP_12152607.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353625495|gb|EHC74281.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 306
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|195499016|ref|XP_002096768.1| GE25854 [Drosophila yakuba]
gi|194182869|gb|EDW96480.1| GE25854 [Drosophila yakuba]
Length = 737
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 170/391 (43%), Gaps = 40/391 (10%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY QVE+ + P LR + Q N ++ Y AR GV + M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLTPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E A V E K + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEAQTKPPVGHTYPADGTPLSN------CDCGCAQR---LAIGTR 166
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 249
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K L E G++++ L + D +++ +GF T T L ++A G V+
Sbjct: 227 VTGIGQK-TQCLLLEAGMSSIEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSSVRPTG 285
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 370 SSDSDSRKK------FPSKSCPLRYGTAKIQ 394
+S ++++ F + CP G +K+Q
Sbjct: 343 TSHRETKQANILPSLFKTSVCPGETGVSKVQ 373
>gi|168232268|ref|ZP_02657326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168238581|ref|ZP_02663639.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194468929|ref|ZP_03074913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194735550|ref|YP_002113339.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250353|ref|YP_002145295.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|375000050|ref|ZP_09724390.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|416526532|ref|ZP_11742437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536260|ref|ZP_11748327.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416552950|ref|ZP_11757412.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|440770406|ref|ZP_20949356.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440771964|ref|ZP_20950874.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|194455293|gb|EDX44132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194711052|gb|ACF90273.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197214056|gb|ACH51453.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197288572|gb|EDY27949.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|205333456|gb|EDZ20220.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|353074738|gb|EHB40498.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363557584|gb|EHL41789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363563486|gb|EHL47560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363565366|gb|EHL49402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|436411550|gb|ELP09499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436420192|gb|ELP18060.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
Length = 351
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|204926676|ref|ZP_03217878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|452121423|ref|YP_007471671.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204323341|gb|EDZ08536.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|451910427|gb|AGF82233.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 351
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRRVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYD 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIASNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|417346516|ref|ZP_12126349.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417371123|ref|ZP_12141791.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353579501|gb|EHC41021.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353608986|gb|EHC62416.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
Length = 356
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|194449490|ref|YP_002044297.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|386590192|ref|YP_006086592.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|419727415|ref|ZP_14254383.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733717|ref|ZP_14260612.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419739357|ref|ZP_14266105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745492|ref|ZP_14272124.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419750239|ref|ZP_14276704.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421572746|ref|ZP_16018392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421577654|ref|ZP_16023242.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421582244|ref|ZP_16027785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421584356|ref|ZP_16029864.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|194407794|gb|ACF68013.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|381298604|gb|EIC39680.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381298904|gb|EIC39978.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381300997|gb|EIC42053.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381305571|gb|EIC46481.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381307432|gb|EIC48288.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383797236|gb|AFH44318.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|402515681|gb|EJW23095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402516242|gb|EJW23655.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402516572|gb|EJW23983.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402530874|gb|EJW38087.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
Length = 351
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-IGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|81427996|ref|YP_394995.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
gi|78609637|emb|CAI54683.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
Length = 376
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 155/345 (44%), Gaps = 66/345 (19%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGV 64
++ +R I H+D+D FY +E+R+QP LR P + + GG G++ Y AR YGV
Sbjct: 10 ENDTSRKIIHIDMDAFYASIEEREQPDLRQKPLIIARDPSDTGGKGVVTTANYVARQYGV 69
Query: 65 KRSMRGDEAKEVCPQIELV-QVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 122
+M +A E+ P+ + V + P + Y++ +++ I + E + DE
Sbjct: 70 HSAMSAQKAAELIPKHQAVFKTP------NFPLYQSVSAQIHDIFHTVTDKIEPIAFDEA 123
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T E+K G
Sbjct: 124 YLDVT------------------------------ENKLG-------------------- 133
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
L + +V L+ +L+ET+ SAGI++NK LAK+AS KPA +T V L
Sbjct: 134 --LTHTIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFL 191
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LPI+K + +G K +Q+ LG+ T DLL SE L + +G G L+ RGI
Sbjct: 192 SRLPIEKFRGVGQKTVPKMQD-LGIMTGADLLAQSEMFLMQHFG-KLGYGLYRHVRGIDN 249
Query: 303 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
V+ + KS G+ ++ P L + VQ L L EL++RL
Sbjct: 250 RPVEYQRERKSIGNEHTYGQP--LISEEQVQVQLKSLAVELAQRL 292
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 149/352 (42%), Gaps = 72/352 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D F+ VEQ PK RG P AV + A YEAR YGV+ ++ G
Sbjct: 11 RKIIHVDMDAFFAAVEQLDHPKWRGKPLAVGGGGDRGVVS--AASYEARKYGVRSALSGV 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK +CP + R K R+ E S+ E S+DE +LD
Sbjct: 69 IAKRLCPHLIFAPTRFDRYKEISEIVRSVFLEYTSL------VEPLSLDEAFLD------ 116
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
++E P ++
Sbjct: 117 --VSEYP------------------------------------------------SATMV 126
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ +T T SAGI+ NK LAK+AS NKP Q T+P V L++L +KK
Sbjct: 127 AQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPPEEVLSFLENLDVKKFH 186
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G K + LG+ + DL S L++ +G +G + + RGI EV+ +P
Sbjct: 187 GIGAKTKLKMYG-LGIYSGNDLKLQSAAFLEKHFG-KSGIHYFKVVRGIHTSEVKPHRIP 244
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G+ ++F +T S + ++ + + +S L ++NK T+TL
Sbjct: 245 KSLGAERTF------ETNLSSEVYIEEKLKLISALLEKRTKKNKVAGKTITL 290
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 143/336 (42%), Gaps = 64/336 (19%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
++ R I H+D+D FY VEQR P L+G P AV + E G + A YEAR +GV+ +
Sbjct: 3 TAVVRRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQER--GVVAAASYEARKFGVRSA 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 127
M +A+ CP L+ VP YR +++ +I AR Y L
Sbjct: 61 MPSVQAQRKCPH--LIFVP-----PRFDVYRAVSAQIHAIFAR------------YTPLI 101
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
P SLDE D + L
Sbjct: 102 Q----------PLSLDE-----------------------------AYLDVTNPLLLRPS 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I E+R +L ET T SAG+++NK LAKLAS KP Q +P + + + +LP+
Sbjct: 123 ATAIAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEAFVANLPV 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 183 NAFHGVGPATAQRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEP 240
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 343
KS G +F + L+T A + L++L ++
Sbjct: 241 NRPRKSLGKEITF--AQDLRTSAELHAALHELAAKV 274
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 150/352 (42%), Gaps = 68/352 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY VEQR P+LRG P AV G + A YEAR +GV +M
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGKPIAV--GGSAARGVVAAASYEARKFGVHSAMPSV 68
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK CP EL+ VP Y+ + I E++ + T E
Sbjct: 69 TAKRKCP--ELIFVP-----PRFDVYKAVSQQ---------------IREIFAEYTPLIE 106
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D H K + I
Sbjct: 107 -------PLSLDE-----------------------------AYLDVTHNLKGMEIATEI 130
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ + T SAGI++NK LAK+AS +NKP Q + + +++LP+KK
Sbjct: 131 ALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEALPVKKFH 190
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + + LG+ T L + S + L E +G +G + + IARGI +V+ +
Sbjct: 191 GVGPATAERM-HRLGIDTGASLKEKSLEFLVEHFG-KSGPYFYGIARGIDERQVKPNRVR 248
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KS G+ +F + L T + L L E++ + E N A T+TL
Sbjct: 249 KSVGAEDTF--SQDLHTFEPAREGLQPLI----EKVWAYCEANGIGAKTVTL 294
>gi|161501818|ref|NP_760709.2| DNA polymerase IV [Vibrio vulnificus CMCP6]
gi|320155564|ref|YP_004187943.1| DNA polymerase IV [Vibrio vulnificus MO6-24/O]
gi|33301083|sp|Q8DBI7.2|DPO4_VIBVU RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71151855|sp|Q7MID6.2|DPO4_VIBVY RecName: Full=DNA polymerase IV; Short=Pol IV
gi|319930876|gb|ADV85740.1| DNA polymerase IV [Vibrio vulnificus MO6-24/O]
gi|319999272|gb|AAO10236.2| DNA polymerase IV [Vibrio vulnificus CMCP6]
Length = 354
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 137/314 (43%), Gaps = 63/314 (20%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S+ R I H+D+DCFY VE R P R P AV + E + G + YEAR +GV+ +
Sbjct: 2 STQMRKIIHIDMDCFYAAVEMRDNPNFRSRPLAVGGH-EKQRGVISTCNYEARKFGVRSA 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDL 126
M +A ++CP L+ VP + Y+ + + SI +R E S+DE YLD+
Sbjct: 61 MPTAQALKLCP--SLLVVP-----GRMQVYKEVSTHIRSIFSRYTHLIEPLSLDEAYLDV 113
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD+ + C A
Sbjct: 114 TDSTQ------------------------------------------CHGSA-------- 123
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
LI +R + E + T SAG+A K LAK+AS MNKP Q +P V+ ++D+LP
Sbjct: 124 --TLIAEAIRRDIWNELQLTASAGVAPIKFLAKVASDMNKPNGQFVIPPEQVQSVIDTLP 181
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
++K+ + GK+ N+ G+ D+ +L + +G G LW + GI EV
Sbjct: 182 LQKIPGV-GKVSLEKLNQAGLYVCQDVKNSDYRQLLKQFG-RLGASLWQRSHGIDEREVI 239
Query: 307 ARLLPKSHGSGKSF 320
KS G ++F
Sbjct: 240 VERERKSVGVERTF 253
>gi|116628345|ref|YP_820964.1| DNA polymerase IV [Streptococcus thermophilus LMD-9]
gi|122267060|sp|Q03J54.1|DPO4_STRTD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116101622|gb|ABJ66768.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus thermophilus LMD-9]
Length = 367
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 136/313 (43%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ QVE R P L+ P + GG G+++ YEA+ YGV +M
Sbjct: 11 SRKIIHIDMDAFFAQVEMRDDPSLKDKPVIIGNDPRKTGGRGVVSTCNYEAKKYGVHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLT 127
EA E CP + + S YR G ++ I E SIDE YLD+T
Sbjct: 71 SSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
++ LG++S
Sbjct: 124 ------------------------TNKLGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L LPI
Sbjct: 132 AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 192 AKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRVRKSIGSERTY 262
>gi|417355889|ref|ZP_12131585.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|417378884|ref|ZP_12147411.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417472629|ref|ZP_12168274.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417525134|ref|ZP_12184389.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353597694|gb|EHC54333.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|353619144|gb|EHC69627.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353653545|gb|EHC95057.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353670162|gb|EHD06852.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
Length = 356
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 104 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 128 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 188 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 246 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|238764545|ref|ZP_04625492.1| DNA polymerase IV [Yersinia kristensenii ATCC 33638]
gi|238697247|gb|EEP90017.1| DNA polymerase IV [Yersinia kristensenii ATCC 33638]
Length = 352
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 144/346 (41%), Gaps = 73/346 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSKD-RRGVISTANYPARRYGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CPQ++++ +++Y+ A + I AR E S+DE YL
Sbjct: 61 MALKLCPQLKVI-------PGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D +D +A C L
Sbjct: 108 ------------------------------DVSDCQA--------CSGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K+
Sbjct: 122 IAQEIRQSIAMELNLTASAGIAPVKFLAKIASDLNKPNGQYVITPDKVLPFLHDLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G LQ ELG+ T D+ + + +L + +G G LW + GI EV L
Sbjct: 182 PGVGKVTAKRLQ-ELGLITCSDVQHYPQAELLKRFG-KFGHVLWERSHGIDEREVSPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
KS G ++ + W + CE L E+L +LE R
Sbjct: 240 RKSVGVERTL--------AEDIHDW--ESCELLIEKLYIELETRLR 275
>gi|343519619|ref|ZP_08756598.1| ImpB/MucB/SamB family protein [Haemophilus pittmaniae HK 85]
gi|343392466|gb|EGV05032.1| ImpB/MucB/SamB family protein [Haemophilus pittmaniae HK 85]
Length = 305
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 150/349 (42%), Gaps = 66/349 (18%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
S R I HVD+DCFY VE R+ PKL+G P AV + +G L YEAR +G+ +M
Sbjct: 2 SPLRKIIHVDMDCFYASVEIRENPKLQGFPVAVGGLSRQRGV-LTTCNYEARKFGLHSAM 60
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
+A + CP+ L+ VPV ++ Y+ +++ I R Y DL +
Sbjct: 61 PTAQAIKKCPK--LILVPV-----NMPLYKQVSAQIHQIFKR------------YTDLIE 101
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D L
Sbjct: 102 ----------PLSLDE-----------------------------AYLDVTDCSMLQGSA 122
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R + +E + T SAG+A K LAK+AS MNKP Q + V+ + SL +
Sbjct: 123 TWIAEDIRRHIWQELQLTASAGVAPLKFLAKIASDMNKPNGQFVIKPEEVEAFVRSLHLS 182
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K+ +G L+ ++G+TT D+ + + L +G G +W+ + G+ +VQ
Sbjct: 183 KIPGVGKVTAERLE-QMGLTTCADIQRMDQSVLLNIFG-KMGQRIWDFSHGVDNRQVQPH 240
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS G K+ ++ VA L L +EL +RL L QN I
Sbjct: 241 RERKSVGVEKTL--SENIRNVADGLALLPSLYDELIQRL---LRQNSTI 284
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 161/350 (46%), Gaps = 78/350 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLI-AVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P L+G P AV GG G++ A YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQMDNPNLKGKPLAV-------GGSEVRGVVSAASYEARKFGVRSAISGIQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
K++CP +L+ VP Y+ + I +++LD TD E
Sbjct: 54 KKLCP--DLIFVP-----PRFDRYKEISKQ---------------IRKIFLDYTDLVE-- 89
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE +++ E+K GN S LI
Sbjct: 90 -----PLSLDE-------AYLDVTENKKGNPS----------------------ATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ +E T SAGI+ NK +AK+AS NKP Q TV ++ L+ L +KK +
Sbjct: 116 EIRKRIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNPDEIEPFLEKLDVKKFYGV 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ T DL + S + L+ +G N+G + I RGI V+ KS
Sbjct: 176 -GKVTAEKMYQLGIFTGYDLKQKSVEYLENHFG-NSGLHYFQIVRGIHNSAVKPNRKIKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G+ ++F L + ++ L + +EL +R L+++K T+TL
Sbjct: 234 VGAERTF--GENLSSEIFMEERLQSIAKELEKR----LQKSKISGKTITL 277
>gi|440749593|ref|ZP_20928839.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
gi|436481879|gb|ELP38025.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
Length = 369
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 155/363 (42%), Gaps = 69/363 (19%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR 66
D S R I HVD+D F+ VEQ P+LRG P AV E G + A YEAR +GV+
Sbjct: 3 DQSTIRKIIHVDMDAFFASVEQLDNPELRGKPVAVGGNRE--RGVVAAASYEARKFGVRS 60
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 126
+M G A CP + V+ R K ++S I +++LD
Sbjct: 61 AMPGKIAALRCPGLIFVRPRFERYK-EIS---------------------GQIRQIFLDY 98
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
TD E P SLDE L + N+ AT
Sbjct: 99 TDLVE-------PLSLDEA--------FLDVTENKVNNPSAT------------------ 125
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
I E+R ++ E SAGI++NK LAK AS +NKP Q + + + L+ LP
Sbjct: 126 ---RIALEIRKRIKDELGLNASAGISYNKFLAKTASDINKPNGQAVILPKNAEAFLEKLP 182
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
I++ + GK+ ELG+ DL ++S L + +G +G +NI RGI EV+
Sbjct: 183 IERFYGI-GKVTAEKMKELGIHNGFDLKQYSVQYLTKKFG-KSGLHFYNIVRGIHLSEVK 240
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA-----HTL 361
+ KS + +F + + + L ++ EE+ R+ + + + H
Sbjct: 241 PNRIRKSLSAESTF--SKDISEDEQIADALERIWEEVVRRMERSGVKGRTVTLKIKYHDF 298
Query: 362 TLH 364
T+H
Sbjct: 299 TIH 301
>gi|329116160|ref|ZP_08244877.1| putative DNA polymerase IV [Streptococcus parauberis NCFD 2020]
gi|326906565|gb|EGE53479.1| putative DNA polymerase IV [Streptococcus parauberis NCFD 2020]
Length = 364
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE R PKL+G P + + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEVRDNPKLKGKPVVIAKDPRETGGRGVVSTCSYEAREFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + S Y+ G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYSKYKEIGLQIREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 ENK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ I +++ + E TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 ALKIAKLIQLDIWTELHLTCSAGVSYNKFLAKLASDYQKPRGLTLVLPDDALSFLSDLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++GV DLL +E +L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKSVEKL-HDMGVYKGDDLLLLTEMQLIDQFG-RFGYDLYRKARGISQSPVKP 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 NRIRKSIGSERTY 262
>gi|300703898|ref|YP_003745500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum CFBP2957]
gi|299071561|emb|CBJ42885.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CFBP2957]
Length = 362
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 151/339 (44%), Gaps = 65/339 (19%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R I H D DCFY +E R P+L GLP AV E +G + YEAR +G+ +M
Sbjct: 5 AVRKIIHCDCDCFYAAIEMRDDPRLVGLPLAVGGRPERRGV-VATCNYEARKFGIHSAMP 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
+A + CP +LV +P A + YR ++ +I + E S+DE YLD+TD
Sbjct: 64 MAQAIKRCP--DLVILPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ MLA + G
Sbjct: 117 ST--MLAGS--------------------------------------------------G 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++
Sbjct: 125 TRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQVDAFVAALPVE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI VQ
Sbjct: 185 RLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHRPVQPS 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS +++ L+T+ + L L ++L+ R+
Sbjct: 243 QIRKSVSVEETYAT--DLRTLDDCRRELTVLVDQLAARV 279
>gi|294055037|ref|YP_003548695.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
gi|293614370|gb|ADE54525.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
Length = 350
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 167/386 (43%), Gaps = 75/386 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY E R++P P AV + G L Y AR+YGV+ +M
Sbjct: 5 RRIIHIDMDCFYAACEMRERPDYANRPIAVGGAS--GRGVLTTCNYSARSYGVRSAMPVF 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A+++CPQ L+ +PV YR +V +I R Y DL +
Sbjct: 63 QARQLCPQ--LIILPV-----RFELYRTISKQVRAIFHR------------YTDLVE--- 100
Query: 132 AMLAETPPESLDE--VDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE +D LK G
Sbjct: 101 -------PLSLDEAYLDVSQLKQR----------------------------------GA 119
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I TE+R + +ET T SAGIA NK++AK+AS NKP Q V S V+ + LPI+K
Sbjct: 120 EIATEIRSTIERETGLTASAGIAPNKLIAKIASDWNKPNGQCIVGPSKVEAFMRPLPIRK 179
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ +G K ELG+ T G L + + +L +G + G L+ + RGI V+
Sbjct: 180 IWGIGPKSAQRF-AELGIETCGQLQELDQTQLTHRFG-SFGFELYKLCRGIDERPVEPNR 237
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
+ KS +F + L+T+ + + L + +EL + L + + + L + F+
Sbjct: 238 IRKSLSCEHTF--QQNLETLRACESQLERQFDELLQDLRASAPDRQITKLVIKLKFADFR 295
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQE 395
+ ++ P+ L+ TA + E
Sbjct: 296 QTTAEK----PASQPDLQQYTALLHE 317
>gi|205351637|ref|YP_002225438.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|375122418|ref|ZP_09767582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|445131501|ref|ZP_21381799.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|205271418|emb|CAR36226.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326626668|gb|EGE33011.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|444850327|gb|ELX75429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
Length = 351
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEYLYPELERRLAIV 277
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 GDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 142/334 (42%), Gaps = 63/334 (18%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R+ P L+G P AV + +G L YEAR +G+ +M +A
Sbjct: 7 IIHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGV-LTTCNYEARKFGLHSAMPTAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP L+ VPV +++ Y+ +++ I R Y D+ +
Sbjct: 66 IKKCPN--LILVPV-----NMALYKQVSAQIHQIFHR------------YTDIIE----- 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D H K I
Sbjct: 102 -----PLSLDE-----------------------------AYLDVTHCQKCSGSATWIAQ 127
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E T SAG+A K LAK+AS MNKP Q + + V + +L + K+ +
Sbjct: 128 EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLSLNKIPGV 187
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ + ++G+ T D+ F + L +G G +W+ + GI EVQA KS
Sbjct: 188 -GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKS 245
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
G ++ + T+ LN L +EL RL
Sbjct: 246 VGVEQTL--IENIHTIEQASELLNNLYDELIRRL 277
>gi|193782767|ref|NP_436520.4| DNA polymerase IV [Sinorhizobium meliloti 1021]
gi|193073223|gb|AAK65932.2| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti 1021]
Length = 369
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 138/318 (43%), Gaps = 66/318 (20%)
Query: 6 PDSSGARI--IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYG 63
P S G R+ I H+D+D FY VEQR P+LRG P A V Y E + G + A YEAR +G
Sbjct: 9 PPSPGGRVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPEAR-GVVAAASYEARKFG 66
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 122
V +M AK CP EL+ VP YR ++ +I A E S+DE
Sbjct: 67 VHSAMPSVTAKRKCP--ELIFVP-----HRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEA 119
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T+ + T E+ EE
Sbjct: 120 YLDVTENFRGLKLAT------EIAEE---------------------------------- 139
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+R ++ ET T SAG+++NK LAK+AS KP + +
Sbjct: 140 ------------IRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFV 187
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
+LP+KK +G ++ LG+ T DL LQ+ +G +G + + IARGI
Sbjct: 188 QALPVKKFHGVGPATAEKMKR-LGIETGADLKSRDLAFLQQHFG-KSGPYFYWIARGIDE 245
Query: 303 EEVQARLLPKSHGSGKSF 320
+V+ + KS G+ +F
Sbjct: 246 RKVKPDRIRKSIGAEDTF 263
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 72/356 (20%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R+ P L+G P AV + +G L YEAR +G+ +M +A
Sbjct: 7 IIHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGV-LTTCNYEARKFGLHSAMPTAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP L+ VPV +++ Y+ +++ I R Y D+ +
Sbjct: 66 IKKCP--NLILVPV-----NMALYKQVSAQIHQIFQR------------YTDIIE----- 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D H K I
Sbjct: 102 -----PLSLDE-----------------------------AYLDVTHCQKCSGSATWIAQ 127
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E T SAG+A K LAK+AS MNKP Q + + V+ + +L + K+ +
Sbjct: 128 EIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVEEFIKTLSLNKIPGV 187
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ + ++G+ T D+ F + L +G G +W+ + GI EVQA KS
Sbjct: 188 -GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKS 245
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
G ++ + T+ LN L +EL RL +R++ + L SAF+
Sbjct: 246 VGVEQTL--IENIHTIEQASALLNNLYQELIRRL-------ERVSRNIPL--SAFR 290
>gi|150377463|ref|YP_001314058.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150032010|gb|ABR64125.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 378
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 135/312 (43%), Gaps = 64/312 (20%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
G R I H+D+D FY VEQR P+LRG P A V Y + G + A YEAR +GV +M
Sbjct: 24 GVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPAAR-GVVAAASYEARKFGVHSAMP 81
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTD 128
AK CP +L+ VP YR ++ +I A E S+DE YLD+T+
Sbjct: 82 SVTAKRKCP--DLIFVP-----HRFEVYRAVSRQIHAIFAEYTPLIEPLSLDEAYLDVTE 134
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ M E E+ E
Sbjct: 135 NLKGM------ELATEIAE----------------------------------------- 147
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
E+R ++ ET T SAG+++NK LAK+AS KP + + LP+K
Sbjct: 148 -----EIRARIRAETGLTASAGVSYNKFLAKIASDQRKPDGLFVITPKHGPEFVQMLPVK 202
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
K +G ++ LG+ T DL LQ+ +G +G + + IARGI G EV+
Sbjct: 203 KFHGVGPATAEKMKR-LGIETGADLKARDLAFLQQHFG-KSGPYFYWIARGIDGREVKPD 260
Query: 309 LLPKSHGSGKSF 320
+ KS G+ +F
Sbjct: 261 RIRKSVGAEDTF 272
>gi|325921296|ref|ZP_08183156.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
gi|325548263|gb|EGD19257.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
Length = 359
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 150/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + V VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AMRAERLCP--DAVFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQ 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T E+ +
Sbjct: 111 AKTGMQLAT------EIAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L LP+
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKLAA-LGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDIALDA-------LDPHILRLAEKTWLATRRTERIGRTVVL 284
>gi|416510596|ref|ZP_11737194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416520105|ref|ZP_11740182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416558896|ref|ZP_11760418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363549265|gb|EHL33622.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363556044|gb|EHL40261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363576390|gb|EHL60224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
Length = 351
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIL 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|386333331|ref|YP_006029500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
gi|334195778|gb|AEG68963.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
Length = 362
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 151/339 (44%), Gaps = 65/339 (19%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R I H D DCFY +E R P+L GLP AV E +G + YEAR +G+ +M
Sbjct: 5 AVRKIIHCDCDCFYAAIEMRDDPRLVGLPLAVGGRPERRGV-VATCNYEARKFGIHSAMP 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
+A + CP +LV +P A + YR ++ +I + E S+DE YLD+TD
Sbjct: 64 MAQAVKRCP--DLVILPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ MLA + G
Sbjct: 117 ST--MLAGS--------------------------------------------------G 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++
Sbjct: 125 TRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI VQ
Sbjct: 185 RLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRPVQPS 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS +++ L+T+ + L L ++L+ R+
Sbjct: 243 QIRKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 279
>gi|261822676|ref|YP_003260782.1| DNA polymerase IV [Pectobacterium wasabiae WPP163]
gi|261606689|gb|ACX89175.1| DNA-directed DNA polymerase [Pectobacterium wasabiae WPP163]
gi|385873125|gb|AFI91645.1| DNA polymerase IV [Pectobacterium sp. SCC3193]
Length = 352
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 170/413 (41%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CPQ+ L+ + Y++ ++ I +R E S+DE YLD+TD
Sbjct: 61 TALRLCPQLTLL-------PGRMEVYKSTSRQIREIFSRYTALIEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
S N S + E
Sbjct: 112 ----------------------------SPHCNGSATRIAE------------------- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R + E T SAGIA K LAK+AS +NKP Q + V L +LP++K+
Sbjct: 125 ---EIRRTIANELNLTASAGIAPIKFLAKIASELNKPNGQYVITPEQVDDFLLALPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ ++ L + +G G LW +GI ++ L
Sbjct: 182 PGVGKVTAKRLE-ERGLYTCTDVRGYALADLLKEFG-KFGRVLWERCQGIDDRQISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFK 369
KS G KT+A H +Q CE L E+L +LE + +R+ L + K
Sbjct: 240 RKSVGVE---------KTLAQDIHDWDQ-CENLIEQLYQELEVRLQRVKPDLHIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ ++D L Q +E S GV+ G H +
Sbjct: 290 LKFDDFQQTTQEHVWPMLN-----KQDLLKLAQQTWQERRKSRGVRLVGLHVT 337
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 67/372 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D +Y V + P+LRG A+ G + A YEAR +GVK +M
Sbjct: 8 RKIIHVDMDAYYASVAELDNPELRG--KAIAVGGGGDRGVVSAASYEARKFGVKSAMSNV 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
AK+ CP I V K+D + Y+ A I E++ + TD E
Sbjct: 66 LAKQKCPHIIFV-------KSDFARYKELS---------------AQIREIFFEYTDLVE 103
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE L + + N+ A I
Sbjct: 104 -------PLSLDEA--------YLDVTNNKKNNPSANE---------------------I 127
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L+ LP+ K
Sbjct: 128 AREIRQKIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHPEEVIQFLEELPVNKFY 187
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + N LG+ DL K S ++L + +G +G +NI RGI EV+ +
Sbjct: 188 GVGKVTAAKMYN-LGIFVGNDLKKRSLEELTQLFG-KSGLHYYNIVRGIHKSEVKPNRIR 245
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF-KS 370
KS G+ ++F + + + LN + +E+ +R+ + K I TL + S F +
Sbjct: 246 KSVGAERTF--RENISSEIYMLDKLNDIADEIEKRMHKSNTKGKTI--TLKIKYSDFTQQ 301
Query: 371 SDSDSRKKFPSK 382
+ S + +F SK
Sbjct: 302 TRSKTVGQFISK 313
>gi|347525843|ref|YP_004832591.1| DNA polymerase IV [Lactobacillus ruminis ATCC 27782]
gi|345284802|gb|AEN78655.1| DNA polymerase IV [Lactobacillus ruminis ATCC 27782]
Length = 366
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 133/316 (42%), Gaps = 64/316 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
AR I HVD+DCFY +E R KL G P + + GG G+++ Y AR++GV +M
Sbjct: 2 ARKIIHVDMDCFYASIEVRDNQKLAGKPVVIARDPRHSGGKGVVSTANYVARSFGVHSAM 61
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+EA +CP + V VP D YR E+ I + E + DE YLD+T
Sbjct: 62 NANEALNLCP--DAVFVP-----PDFKKYRQVSKEIHEIFHEYTDKVEPIAFDEAYLDVT 114
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG +S
Sbjct: 115 ECK------------------------LGFKS---------------------------- 122
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+I ++ ++ ++T TCS GI++NK LAKLAS KP T V L L I
Sbjct: 123 ATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALDFLLPLKI 182
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K + +G K + +ELGV DL SE L +G G + + RGI EV+
Sbjct: 183 EKFRGVGRKTVIKM-HELGVYNGYDLYGLSELDLIHYFG-KMGHFFYEQVRGIDDREVEW 240
Query: 308 RLLPKSHGSGKSFPGP 323
+ KS G ++F P
Sbjct: 241 QRERKSFGVERTFNMP 256
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 78/350 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P+LRG AV GGG + YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAV-------GGGEPRGVVATASYEARKFGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+++CP + V+ R K R E + E S+DE YLD+T
Sbjct: 54 RKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAYLDVT------ 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
+K GN S LI
Sbjct: 102 ------------------------VNKKGNPS----------------------ATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K +
Sbjct: 116 EIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS
Sbjct: 176 -GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G+ ++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 234 VGAEETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|403059725|ref|YP_006647942.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807051|gb|AFR04689.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 352
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 169/413 (40%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ G+ D+ Y++ ++ I AR E S+DE YLD+TD
Sbjct: 61 TALRLCPHLTLLP-----GRMDV--YKSTSRQIREIFARYTSLIEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
S N S + E
Sbjct: 112 ----------------------------SPHCNGSATRIAE------------------- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R + E T SAGIA K LAK+AS +NKP Q + V L +LP++K+
Sbjct: 125 ---EIRRTIADELNLTASAGIAPIKFLAKIASELNKPNGQYVITPEQVDDFLLTLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ ++ L + +G G LW +GI + L
Sbjct: 182 PGVGKVTAKRLE-ERGLHTCADVRVYALADLLKEFG-KFGRVLWERCQGIDERRISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFK 369
KS G K+ + W + CE L E+L +LE + KR+ L + K
Sbjct: 240 RKSVGVEKTL--------AEDIHDW--EQCENLIEQLYQELEVRLKRVKPDLHIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ ++D L + +E S GV+ G H +
Sbjct: 290 LKFDDFQQTTQEHVWPVLN-----KQDLLKLARQTWQERRKSRGVRLVGLHVT 337
>gi|299066596|emb|CBJ37786.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CMR15]
Length = 362
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 150/339 (44%), Gaps = 65/339 (19%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R I H D DCFY +E R P+L G P AV E +G + YEAR +G+ +M
Sbjct: 5 AVRKIIHCDCDCFYAAIEMRDDPRLVGRPLAVGGRPERRGV-VATCNYEARKFGIHSAMP 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
+A + CP +L+ VP A + YR ++ +I E S+DE YLD+TD
Sbjct: 64 MAQAVKRCP--DLLIVPPA-----MDKYRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 116
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ MLA + G
Sbjct: 117 SP--MLAGS--------------------------------------------------G 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++
Sbjct: 125 TRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVSALPVE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI +VQ
Sbjct: 185 RLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPS 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS +++ L+T+ Q L L ++L+ R+
Sbjct: 243 QIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 153/356 (42%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I HVD+D F+ +E R P L+G P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYECCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G ++
Sbjct: 124 ------------------------------ENKLG----------------------ISS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLP+
Sbjct: 132 AVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPYGLTLILPEDAVGILASLPV 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKV 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 250 DRVRKSIGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|418517734|ref|ZP_13083893.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705578|gb|EKQ64049.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 359
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARIFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AVRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFHRHTELVEPLSLDEAYLDVTH 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T EV +
Sbjct: 111 AKTGMQLAT------EVAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L L +
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL + ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL +A H L L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDALAP--HILR-----LAEKTWLATRRTERIGRTVVL 284
>gi|390990143|ref|ZP_10260433.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555108|emb|CCF67408.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 359
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARIFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AVRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T EV +
Sbjct: 111 AKTGMQLAT------EVAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L L +
Sbjct: 124 -LIRTQIR----EETQLTASAGIASNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL + ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL +A H L L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDALAP--HILR-----LAEKTWLATRRTERIGRTVVL 284
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 143/334 (42%), Gaps = 63/334 (18%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R+ P L+G P AV + +G L YEAR +G+ +M +A
Sbjct: 7 IIHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGV-LTTCNYEARKFGLHSAMPTAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP L+ VPV +++ Y+ +++ I R Y D+ +
Sbjct: 66 IKKCPN--LILVPV-----NMTLYKQVSAQIHQIFHR------------YTDIIE----- 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D H K I
Sbjct: 102 -----PLSLDE-----------------------------AYLDVTHCQKCSGSATWIAQ 127
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E T SAG+A K LAK+AS MNKP Q + + V+ + +L + K+ +
Sbjct: 128 EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVEEFIKTLSLNKIPGV 187
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ + ++G+ T D+ F + L +G G +W+ + GI EVQA KS
Sbjct: 188 -GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKS 245
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
G ++ + TV LN L +EL RL
Sbjct: 246 VGVEQTL--IENIHTVEQALALLNNLYDELIRRL 277
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 169/379 (44%), Gaps = 57/379 (15%)
Query: 3 VARPDSSG--ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GY 57
VAR +++ ++ I VD+D FY VE R PKL +P AV GG+ + Y
Sbjct: 73 VARMEATRDLSKTIVVVDMDMFYAAVEMRDDPKLCDVPLAV--------GGMNMISTTNY 124
Query: 58 EARNYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCER 116
AR +GV+ +M G KE+CP++ V V ++ Y ++V ++ A+ E
Sbjct: 125 AARQFGVRAAMPGFIGKELCPELHFVPV-------NMEKYAGVAAQVRAVFAQYDPNFEA 177
Query: 117 ASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 176
S+DE LDLTD + +LD+ + + + + ++W
Sbjct: 178 FSLDEACLDLTDYVAKNWQKYASVALDDFESKE--------------EVQEEEEQW---- 219
Query: 177 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 236
A +V ELR ++ T+ T SAGIA N MLAK+ S MNKP Q +PF+
Sbjct: 220 -PSTPAGRAAIAAAVVRELRQKIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFT 278
Query: 237 --SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 294
V L LP++K+ +G L LGV T G+L K+ + T WL
Sbjct: 279 RERVLTFLCDLPVRKIGGIGKVTEKILNEALGVHTGGELFN-QRGKIFHLFTEKTAVWLL 337
Query: 295 NIARGI-SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
+ G+ E Q R KSF R ++++ + L C E+ + L DLE+
Sbjct: 338 QTSLGVRERREKQER---------KSFSRERTFRSLSDPKE-LEAKCLEVCKMLAKDLEK 387
Query: 354 NKRIAHTLTLHASAFKSSD 372
+ A +T +K +D
Sbjct: 388 ANKAAKNVTF---VYKDTD 403
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 155/355 (43%), Gaps = 76/355 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P+LRG AV GGG + YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQLDFPELRGKAIAV-------GGGEARGVVATASYEARKFGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+++CP + V+ R K R E + E S+DE YLD+T
Sbjct: 54 RKLCPHLIFVKPRFERYKQISMQIRAIFYEYTDL------VEPLSLDEAYLDVTV----- 102
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
+K GN S LI
Sbjct: 103 -------------------------NKKGNPS----------------------ATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ ET T SAGI+ NK +AK+AS +KP QTT+ + V+ LD L ++K +
Sbjct: 116 EIRQRIFNETGLTASAGISINKFIAKIASDYHKPNGQTTITQAEVQDFLDKLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ DL + S L+ ++G N+G + + ++RGI EVQ + KS
Sbjct: 176 -GKVTAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
G+ ++F L + ++ L ++ E++ RL K I TL + S F
Sbjct: 234 VGAEETF--AENLTSEVYMERELERIAEDVVRRLKKQQVAGKTI--TLKIKYSDF 284
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 78/350 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P+LRG AV GGG + YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAV-------GGGEPRGVVATASYEARKFGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+++CP + V+ R K R E + E S+DE YLD+T
Sbjct: 54 RKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAYLDVT------ 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
+K GN S LI
Sbjct: 102 ------------------------VNKKGNPS----------------------ATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K +
Sbjct: 116 EIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS
Sbjct: 176 -GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G+ ++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 234 VGAEETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|422019443|ref|ZP_16365991.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
gi|414103282|gb|EKT64860.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
Length = 351
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 139/343 (40%), Gaps = 77/343 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCF+ +E R P LR +P AV + + G L YEAR YGV +M
Sbjct: 2 RKIIHIDMDCFFAAIEMRDDPSLRNVPLAVGGRAD-RRGVLSTANYEARRYGVHSAMSTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP +++V ++ Y++ + + I AR E S+DE YLD+TD
Sbjct: 61 LALKLCPHLKVV-------PGRMAVYKDVSNHIRQIFARYTDLIEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C H L
Sbjct: 112 ---------------------------------------------CQQLH-----GSATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R Q+ E + T SAGIA K LAK+AS MNKP Q + + + SLP+KK+
Sbjct: 122 IAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITPQELPTFVASLPLKKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L + +G+ T D+ K+ L +S G G LW GI V L
Sbjct: 182 PGVGKVTAQKLAD-MGLLTCSDVQKYDMLALIKSMG-KFGQALWERCHGIDERAVNPERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERL 347
KS G ++ + W L+ L +EL RL
Sbjct: 240 RKSVGVERTL--------AKDIHQWEDCLPLLDTLYDELHFRL 274
>gi|294621762|ref|ZP_06700922.1| DNA polymerase IV [Enterococcus faecium U0317]
gi|291598649|gb|EFF29706.1| DNA polymerase IV [Enterococcus faecium U0317]
Length = 321
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 12 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 72 SAQKAYELCPQAIF-------KPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 125 E--------------------------------NKINCKSAIK----------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 136 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 193 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 251 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|305665931|ref|YP_003862218.1| DNA polymerase IV [Maribacter sp. HTCC2170]
gi|88710706|gb|EAR02938.1| DNA polymerase IV [Maribacter sp. HTCC2170]
Length = 366
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 162/380 (42%), Gaps = 73/380 (19%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P+ R I HVD+D FY VE+ P+L+G P AV NE +G + A YEAR +GV+
Sbjct: 2 PEEFPLRKIIHVDMDAFYASVEEMDNPELKGKPLAV-GGNEVRGV-VSAANYEARKFGVR 59
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M G AK CP + V+ R K RN ++ D
Sbjct: 60 SAMSGVMAKRNCPHLTFVKPRYNRYKEISKQIRN----------------------IFFD 97
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
TD E P SLDE +++ +K GN S
Sbjct: 98 YTDLVE-------PLSLDE-------AYLDVTVNKKGNPS-------------------- 123
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
LI E+R ++ E SAGI+ NK +AK+AS NKP Q TV V L+ L
Sbjct: 124 --ATLIAQEIRKRIQDEVGLKASAGISVNKFVAKVASDFNKPNGQKTVNPEEVLQFLEDL 181
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I+ + GK+ +LG+ T +L SE+ L E++G +G+ + RGI V
Sbjct: 182 EIRSFFGV-GKVTAEKMYKLGIFTGKELKTKSEEFLIENFG-KSGSHYHKVVRGIHNGAV 239
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ +PKS G+ ++F L + + L + EL RL + K T+TL
Sbjct: 240 KPHRVPKSVGAERTF--SENLSSEIFMLERLEHIANELERRLS----KTKIAGKTVTL-- 291
Query: 366 SAFKSSDSDSRKKFPSKSCP 385
K SD + SK+ P
Sbjct: 292 ---KIKYSDFTLQTRSKTLP 308
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 153/356 (42%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I HVD+D F+ +E R P L+G P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHVDMDAFFAAIEVRDSPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G ++
Sbjct: 124 ------------------------------ENKLG----------------------ISS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLP+
Sbjct: 132 AVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPV 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKV 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 250 DRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 153/356 (42%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I HVD+D F+ +E R P L+G P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHVDMDAFFAAIEVRDSPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G ++
Sbjct: 124 ------------------------------ENKLG----------------------ISS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLP+
Sbjct: 132 AVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPV 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKV 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 250 DRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|157147182|ref|YP_001454501.1| DNA polymerase IV [Citrobacter koseri ATCC BAA-895]
gi|189027658|sp|A8AKQ2.1|DPO4_CITK8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157084387|gb|ABV14065.1| hypothetical protein CKO_02960 [Citrobacter koseri ATCC BAA-895]
Length = 351
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 142/344 (41%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFYAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ +Y+ A + I +R R E S+DE YL
Sbjct: 61 MALKLCPHLTLL-------PGRFEAYKEASQHIREIFSRYTSRIEPLSLDEAYL------ 107
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D DS C A L
Sbjct: 108 ------------------------------DVTDST------YCHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLKTLPLGKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T D+ K+ L + +G G LW ++GI +V L
Sbjct: 182 PGV-GKVSAARLETMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDERDVNNERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + W CE + ERL +LE+
Sbjct: 240 RKSIGVERTL--------AEDIHEWAE--CEAIIERLYPELERR 273
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|260909969|ref|ZP_05916656.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635919|gb|EEX53922.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
Length = 365
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 151/363 (41%), Gaps = 78/363 (21%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P R I H+D+D FY VEQR P LRG P + +E K G L YEAR YGV
Sbjct: 2 PAQDFNRKIIHIDMDAFYASVEQRDDPSLRGKPVGIG--SEDKRGVLCTASYEARKYGVH 59
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYL 124
+M G +AK +CP EL+ +P + Y+ +V I R E S+DE YL
Sbjct: 60 SAMSGVQAKRMCP--ELILIP-----PNFKKYKQVSQQVQEIFHRYTDIVEPLSLDEAYL 112
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T ++K G
Sbjct: 113 DVT------------------------------QNKQG---------------------- 120
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ V I ++ ++ E T SAG++ NK LAK+AS KP T + S +D
Sbjct: 121 IELAVDIAKRIKQEIYDELHLTASAGVSFNKFLAKVASDFRKPNGITVIHPSRAMQFIDK 180
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPI +G K ++ + +G+ DL + S +L++ +G G +N AR I
Sbjct: 181 LPITDFWGVGHKTAETM-HAMGIFNGADLRQLSRLRLRQVFG-KAGETYYNFARAIDPRP 238
Query: 305 VQARLLPKSHGSGKSF----PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V+ + KS G ++F P L T L +L EL ER L++N T
Sbjct: 239 VEPHWVRKSVGCERTFEEDSSNPNVLLT------ELYRLVLELVER----LKRNDFKGRT 288
Query: 361 LTL 363
LTL
Sbjct: 289 LTL 291
>gi|302684051|ref|XP_003031706.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
gi|300105399|gb|EFI96803.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
Length = 635
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 119/435 (27%), Positives = 179/435 (41%), Gaps = 74/435 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A D D FY E + + P V+Q+N LIAV Y AR YG+ R +
Sbjct: 42 RVVALCDSDAFYAACEMVRLGVDKEQPLVVLQWN-----ALIAVNYPARKYGISRMDKLQ 96
Query: 72 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 112
+A + CP +++V V + K L YR +++ S+ L
Sbjct: 97 DALKRCPHLKVVHVATYKEGEKEPGYWDDVDTKTHKVSLDFYRRESTKMQSLFKELLPDV 156
Query: 113 RCERASIDEVYLDLTDAAEAMLAETPP-------------------------ESLDEV-- 145
E+ASIDE + D T A+A L E P E L V
Sbjct: 157 EIEKASIDEAFFDFTKLAKAKLLERFPYLASVPHDAPRGADSPLPPPPPLSWEGLGTVIP 216
Query: 146 -----DEEALKSHILGLESKDGNDSKATVKEWLCRCDADH----RDKLLACGVLIVTELR 196
D+E + E KD ++ A E D D LA + + +
Sbjct: 217 VHPPPDKEKERGKQGEDEHKDEDEVDAPESEDDAPNLEDDPTTWHDHALAIAAEYMLKAK 276
Query: 197 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK------M 250
++ +T SAGI NK LAKL + KP + +++ L LP +K +
Sbjct: 277 EEIYARLGYTTSAGIGRNKFLAKLTASYRKPRGLNVLRNAAIPNYLRPLPFQKAGTSFSI 336
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFS--EDKLQESYGFNTGTWLWNIA-RGISGEEVQA 307
+ LGGKLG ++ E +TVGDL + +++Q+ +G W++ + RGI EV+
Sbjct: 337 RFLGGKLGKAIAQEYDASTVGDLFVDAPVTEEMQQKFG-EESIWVYEVLRRGIDRNEVKE 395
Query: 308 RL-LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC-SDLEQNKRIAHTLTLHA 365
+ L KS + K+ P P + A WL L EL+ RL + LE TL LHA
Sbjct: 396 KTALFKSMLASKNLPKP--ITNAADGHQWLRVLAAELALRLKDARLESPNLWPKTLVLHA 453
Query: 366 SAFKSSDSDSRKKFP 380
+ + FP
Sbjct: 454 RKGYDTGRSKQAPFP 468
>gi|21244347|ref|NP_643929.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
gi|24211643|sp|Q8PGJ4.1|DPO4_XANAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21110002|gb|AAM38465.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
Length = 359
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARIFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AVRAERLCP--DAIFVP-----PDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T EV +
Sbjct: 111 AKTGMQLAT------EVAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L L +
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL + ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL +A H L L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDALAP--HILR-----LAEKTWLATRRTERIGRTVVL 284
>gi|378956298|ref|YP_005213785.1| DNA damage-inducible protein [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|438128284|ref|ZP_20873092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|357206909|gb|AET54955.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|434942122|gb|ELL48469.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
Length = 351
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 146/347 (42%), Gaps = 71/347 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKTP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + W + CE + E L +LE+ I
Sbjct: 241 KSVGVERTL--------AEDIHEWSD--CEAIIEYLYPELERRLAIV 277
>gi|386742568|ref|YP_006215747.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
gi|384479261|gb|AFH93056.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
Length = 351
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 146/354 (41%), Gaps = 78/354 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY +E R P LR +P AV + + G + YEAR YGV +M
Sbjct: 2 RKIIHIDMDCFYAAIEMRDDPSLRNIPIAVGGSAD-RRGVISTANYEARRYGVHSAMSTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP +++V ++ Y+ + I ++ E S DE YLD+++
Sbjct: 61 VALRLCPHLKVV-------PGRMALYKETSLHIHKIFSQYTDLIEPLSWDEAYLDVSE-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C+ H L
Sbjct: 112 ---------------------------------------------CEHYH-----GSATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK+
Sbjct: 122 IAQAIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L + +G+ T GD+ + L + G G LW GI V L
Sbjct: 182 PGVGKVTAQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 358
KS G ++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 240 RKSVGVERTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 284
>gi|146085845|ref|XP_001465373.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
gi|134069471|emb|CAM67794.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
Length = 786
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 143/520 (27%), Positives = 210/520 (40%), Gaps = 114/520 (21%)
Query: 3 VARPDSSGA-RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
V RP S+ A R IAH+D+DCFY QVE R R P A+VQ+ G IAV Y AR
Sbjct: 24 VFRPCSADAMRCIAHIDMDCFYAQVEAVRLGVDCRVTPFALVQW-----GSFIAVNYPAR 78
Query: 61 NYGVKR-SMRGDEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSE 103
GV+R + DE + P +++ + A G K L YR+A +
Sbjct: 79 ARGVRRFCLSPDEVRRELPDVKMSHIATYAMGESEYCYPEAPRINTHKVSLEPYRHASRQ 138
Query: 104 VVSIL-ARKG-RCERASIDEVYLDLTDAAEAMLAET----PPESLDEVDE---------E 148
+ +IL A G +A IDE Y+D+T+AA LAE SLD + + E
Sbjct: 139 IFAILRAEPGVVVGKAGIDEAYVDVTEAARQELAEVRAAAAGASLDPLADVMEPSTRLIE 198
Query: 149 ALKSHILGLESKDGNDSKATVKE---WLCR--CDAD-----------------HRDKLLA 186
++ + S G A E L R C A+ R LL
Sbjct: 199 DRRAEMEAWFSARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGVDDAAYAERCLLLC 258
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT-TVPFSSVKGLLDSL 245
+V LR ++ E + CSAGIAHN++LAK S +KP QQT +P S L + L
Sbjct: 259 AASRVVHRLRQRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALFE-L 317
Query: 246 PIKKMKQLGGKLGTSLQNELGVTT---------------------VGDLLKFSEDK---- 280
P+ ++ GGKLG ++ G T VGD D+
Sbjct: 318 PLSGLRGFGGKLGAAVSAVCGGVTECREAWLVPLAQLCKLDGTCDVGDGADAEGDREGHV 377
Query: 281 ---------------------LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 319
++ G G + + RG+ + V LP+ + K
Sbjct: 378 DQASAACRGDTKVDNGGGGEDCTDAQG-RMGLYAFYRLRGLGSDTVADPALPRGMKASKI 436
Query: 320 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 379
F A + ++ Q W+ L EL RL + + +L L A+ +++ R +
Sbjct: 437 F--HPACSSWSAAQLWIAPLAGELWHRLSEYESRYHKEGRSLVLVLRAYVTAEQARRGQH 494
Query: 380 PSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSF-GVKTQG 418
++S + D + GLREF+ GV T+G
Sbjct: 495 -TRSYRAQVPLPTNVRDASEIAGMGLREFVKLMRGVTTRG 533
>gi|423138823|ref|ZP_17126461.1| DNA polymerase IV [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051377|gb|EHY69268.1| DNA polymerase IV [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 351
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 146/342 (42%), Gaps = 71/342 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARQFGVRSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP + L+ G+ D +Y+ A V I +R Y L +
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSR------------YTSLIE--- 98
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE WL D+ H LI
Sbjct: 99 -------PLSLDEA--------------------------WLDVTDSPH---CYGSATLI 122
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E+R + E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+
Sbjct: 123 AREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIP 182
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L+N +G+ T GD+ + L + +G G LW ++GI +V + L
Sbjct: 183 GVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLR 240
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 353
KS G ++ + W + CE + E L +LE+
Sbjct: 241 KSVGVERTL--------AEDIHAWSD--CEAIIEYLYPELER 272
>gi|337282710|ref|YP_004622181.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
15912]
gi|335370303|gb|AEH56253.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
15912]
Length = 368
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 148/356 (41%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + Q GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA ++CPQ + + YR G +V I R E SIDE YLD+T
Sbjct: 71 SSKEALDLCPQAIFIS-------GNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + SK+ VK
Sbjct: 124 E--------------------------------NKIQSKSAVK----------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + +E T SAG+++NK LAK+AS KP T V + L + I
Sbjct: 135 ---IARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPEDAEDFLSQMDI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L +E+GV T DLL E L + +G G L+ ARGI V
Sbjct: 192 AKFHGVGKKTVERL-HEMGVYTGADLLAIPEMTLIDRFG-RFGYDLFRKARGIHNSPV-- 247
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KSH KS R + + + + + LS ++ LE++ + TL L
Sbjct: 248 ----KSHRIRKSIGKERTYRKLLYAEDDILEEIANLSSKVAQSLEKHGKQGKTLVL 299
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 151/358 (42%), Gaps = 67/358 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKLRG P +V G + YEAR YGV +M
Sbjct: 4 RRIVHIDMDFFFAQVEMRDNPKLRGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A ++CP VQ YR +E++SI + T+A E
Sbjct: 63 QAHKLCPDGYYVQ-------GQYEKYRTISNEIMSI---------------FRSYTEAVE 100
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D H + I
Sbjct: 101 -------PMSLDE-----------------------------AYLDITHLVRPDLSASQI 124
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
+R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 125 ANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDFP 184
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK + ++ G+ DL + +L +G G L+N ARGI V++ +
Sbjct: 185 GV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRIR 242
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS G+ ++F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 243 KSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|421898125|ref|ZP_16328492.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
gi|206589331|emb|CAQ36293.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
Length = 357
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 151/337 (44%), Gaps = 65/337 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H D DCFY +E R P+L G P AV E +G + YEAR +G+ +M
Sbjct: 2 RKIIHCDCDCFYAAIEMRDDPRLVGWPLAVGGRPEQRGV-VATCNYEARKFGIHSAMPMA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A + CP +LV +P A + YR ++ +I + E S+DE YLD+TD+A
Sbjct: 61 QAVKRCP--DLVILPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTDSA 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
MLA + G
Sbjct: 114 --MLAGS--------------------------------------------------GTR 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++++
Sbjct: 122 IAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVERL 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI VQ +
Sbjct: 182 FGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHRPVQPSQI 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS +++ L+T+ + L L ++L+ R+
Sbjct: 240 RKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 274
>gi|312868224|ref|ZP_07728424.1| putative DNA polymerase IV [Streptococcus parasanguinis F0405]
gi|311095969|gb|EFQ54213.1| putative DNA polymerase IV [Streptococcus parasanguinis F0405]
Length = 368
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 148/356 (41%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R P L+G P + Q GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA ++CPQ + + YR G +V I R E SIDE YLD+T
Sbjct: 71 SSKEALDLCPQAIFIS-------GNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + SK+ VK
Sbjct: 124 E--------------------------------NKIQSKSAVK----------------- 134
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + +E T SAG+++NK LAK+AS KP T V + L + I
Sbjct: 135 ---IARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPEDAEDFLSQMDI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K +G K L +E+GV T DLL E L + +G G L+ ARGI V
Sbjct: 192 AKFHGVGKKTVERL-HEMGVYTGADLLAIPEMTLIDRFG-RFGYDLFRKARGIHNSPV-- 247
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
KSH KS R + + + + + LS ++ LE++ + TL L
Sbjct: 248 ----KSHRIRKSIGKERTYRKLLYAEDDIVEEIVNLSSKVAQSLEKHGKQGKTLVL 299
>gi|418520920|ref|ZP_13086967.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703343|gb|EKQ61837.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 359
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 152/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARIFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AVRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T EV +
Sbjct: 111 AKTGMQLAT------EVAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L L +
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL + ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL +A H L L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDALAP--HILR-----LAEKTWLATRRTERIGRTVVL 284
>gi|343500609|ref|ZP_08738499.1| DNA polymerase IV [Vibrio tubiashii ATCC 19109]
gi|418477342|ref|ZP_13046475.1| DNA polymerase IV [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819971|gb|EGU54802.1| DNA polymerase IV [Vibrio tubiashii ATCC 19109]
gi|384575082|gb|EIF05536.1| DNA polymerase IV [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 355
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 135/311 (43%), Gaps = 63/311 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R I HVD+DCFY VE R P RG P AV + E + G L YEAR +G++ +M
Sbjct: 6 VRKIIHVDMDCFYAAVEMRDNPSYRGRPLAVGGH-EKQRGVLSTCNYEARKFGIRSAMPT 64
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
A ++CPQ L+ VP + Y+ ++ I +R E S+DE +LD+T++
Sbjct: 65 ARALQLCPQ--LLVVP-----GRMQVYKEVSKQIREIFSRYTSLIEPLSLDEAFLDVTES 117
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ C+ A
Sbjct: 118 TQ------------------------------------------CQGSA----------T 125
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI +R + E T SAGIA K LAK+AS MNKP Q +P SV+ ++D LP++K
Sbjct: 126 LIAEAIRRDIWHELSLTASAGIAPVKFLAKVASDMNKPNGQFVIPPDSVQEVVDKLPLEK 185
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ + GK+ ++ G T D+ + L +G G LWN + GI EV
Sbjct: 186 IPGV-GKVSLEKLHQAGFYTGEDIKNSNYRDLLLRFG-RLGASLWNKSHGIDNREVVVER 243
Query: 310 LPKSHGSGKSF 320
KS G ++F
Sbjct: 244 ERKSVGVERTF 254
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 152/358 (42%), Gaps = 68/358 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+D FY V Q P+L G AV E G + A YEAR +GVK +M
Sbjct: 8 RKIIHVDMDAFYASVAQLDNPELIGKAIAVGGSAER--GVVSAASYEARKFGVKSAMSSF 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
AK+ CP + V K D Y+ + +I E S+DE YLD+T
Sbjct: 66 LAKQKCPHLIFV-------KTDFERYKEISQRIRAIFYEYTDLVEPLSLDEAYLDVT--- 115
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+K GN S + L
Sbjct: 116 ---------------------------ENKKGNLSAS----------------------L 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R ++ E SAGI+ NK +AK+AS +NKP Q T+ V L +LP+ K
Sbjct: 127 IAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPNGQKTINPEEVIEFLAALPVNKF 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ T+ LG+ T DL K ++L + +G +G ++I RGI V+ +
Sbjct: 187 YGV-GKVTTAKMYNLGIFTGNDLKKKPLEELMKLFG-KSGAHYYHIVRGIHNSAVKPNRI 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
KS + ++F + + + L Q+ EEL R+ + K I TL + S F
Sbjct: 245 RKSIAAERTF--SENISSEIFMIERLEQIAEELERRMKKTDTKGKTI--TLKIKYSDF 298
>gi|19568907|gb|AAL91965.1|AF483102_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 143/339 (42%), Gaps = 73/339 (21%)
Query: 17 VDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEV 76
VD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++
Sbjct: 1 VDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKL 59
Query: 77 CPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLA 135
CP + L+ G+ D +Y+ A + + I +R R E S+DE YL
Sbjct: 60 CPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYL----------- 101
Query: 136 ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTEL 195
D DS C LI E+
Sbjct: 102 -------------------------DVTDS--------VHCHGS--------ATLIAQEI 120
Query: 196 RMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG 255
R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + G
Sbjct: 121 RQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-G 179
Query: 256 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 315
K+ + +G+ T D+ K L + +G G LW ++GI +V + L KS G
Sbjct: 180 KVSAAKLEAMGLRTCSDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSERLRKSVG 238
Query: 316 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
++ + HW CE + ERL +LE+
Sbjct: 239 VERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|17546306|ref|NP_519708.1| DNA polymerase IV [Ralstonia solanacearum GMI1000]
gi|17428603|emb|CAD15289.1| probable dna polymerase iv (pol iv) protein [Ralstonia solanacearum
GMI1000]
Length = 362
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 150/339 (44%), Gaps = 65/339 (19%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R I H D DCFY +E R P+L G P AV E +G + YEAR +G+ +M
Sbjct: 5 AVRKIIHCDCDCFYAAIEMRDDPRLVGRPLAVGGRPERRGV-VATCNYEARKFGIHSAMP 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
+A + CP +L+ VP A + YR ++ +I E S+DE YLD+TD
Sbjct: 64 MAQAVKRCP--DLLIVPPA-----MDKYRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 116
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ MLA + G
Sbjct: 117 SP--MLAGS--------------------------------------------------G 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++
Sbjct: 125 TRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI +VQ
Sbjct: 185 RLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPS 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS +++ L+T+ Q L L ++L+ R+
Sbjct: 243 QIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|22095618|sp|Q8XZ19.2|DPO4_RALSO RecName: Full=DNA polymerase IV; Short=Pol IV
Length = 357
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 150/337 (44%), Gaps = 65/337 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H D DCFY +E R P+L G P AV E +G + YEAR +G+ +M
Sbjct: 2 RKIIHCDCDCFYAAIEMRDDPRLVGRPLAVGGRPERRGV-VATCNYEARKFGIHSAMPMA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A + CP +L+ VP A + YR ++ +I E S+DE YLD+TD+
Sbjct: 61 QAVKRCP--DLLIVPPA-----MDKYRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTDSP 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
MLA + G
Sbjct: 114 --MLAGS--------------------------------------------------GTR 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++++
Sbjct: 122 IAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVERL 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI +VQ +
Sbjct: 182 FGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPSQI 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS +++ L+T+ Q L L ++L+ R+
Sbjct: 240 RKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 274
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 SEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|397780686|ref|YP_006545159.1| DNA polymerase IV (archaeal DinB-like DNA polymerase)
[Methanoculleus bourgensis MS2]
gi|396939188|emb|CCJ36443.1| DNA polymerase IV (archaeal DinB-like DNA polymerase)
[Methanoculleus bourgensis MS2]
Length = 361
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 130/306 (42%), Gaps = 69/306 (22%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG---GLIAV-GYEARNYG 63
++ RII HVD+D F+ VE R+ P L G P V+ + KGG G+++ YEAR YG
Sbjct: 2 TTDGRIIMHVDMDSFFASVEIRRAPSLAGRP--VIVGADPKGGAGRGVVSTCSYEARRYG 59
Query: 64 VKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEV 122
V M A +CP V +PV R Y E+++IL+ R R E+ SIDE
Sbjct: 60 VHSGMPISRAYTLCPH--GVYLPVNR-----PLYSRVSDEIMAILSERADRIEQVSIDEA 112
Query: 123 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 182
YLD+T A AE
Sbjct: 113 YLDVTSAGSFPAAEA--------------------------------------------- 127
Query: 183 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 242
+ T ++ + + TCS GIA K+ AK+AS KP T V V L
Sbjct: 128 --------LATAIKRDIREAEGLTCSIGIAPGKVAAKIASDYWKPDGLTVVSPDEVAAFL 179
Query: 243 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 302
LP+ K+ +G K G L +GV T+GDL + L G +G L +ARGI
Sbjct: 180 APLPVGKIPGVGKKTGEDLAG-MGVLTIGDLARSDVQALIARIG-RSGIRLHRLARGIDD 237
Query: 303 EEVQAR 308
EVQAR
Sbjct: 238 AEVQAR 243
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 153/356 (42%), Gaps = 70/356 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I HVD+D F+ +E R P L+G P + GG G+++ YEAR +G+ +M
Sbjct: 11 SRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + Y+ G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
E+K G ++
Sbjct: 124 ------------------------------ENKLG----------------------ISS 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLP+
Sbjct: 132 AVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPV 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +E+GV T DLL E L + +G G L+ ARGIS V+
Sbjct: 192 EKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKV 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+ KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 250 DRVRKSIGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 169/390 (43%), Gaps = 71/390 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+RII HVD+D FY VE R P+L+ P AV L Y AR +GV+ +M G
Sbjct: 101 SRIIVHVDMDAFYAAVEMRDNPELKDKPMAV-----GSKSMLSTSNYLARRFGVRAAMPG 155
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
AK++CP L+ VP + YR SEV ILA+ S+DE YLD TD
Sbjct: 156 FIAKKLCPA--LIIVP-----PNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDH 208
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD------------ 177
L+ T E ++ I+G E+ + N + +E + C
Sbjct: 209 LSERLSWT----------EDKRTFIIGAENSEENKPLSGKQEQV-ECTSPILFEDSPSFV 257
Query: 178 ADHR-----------------DKLLACGVLI---VTELRMQVLKETEFTCSAGIAHNKML 217
AD +K + G + V E+R ++ ++T T SAGIA N ML
Sbjct: 258 ADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTTLTASAGIAPNTML 317
Query: 218 AKLASGMNKPAQQTTVP--FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
AK+ S NKP Q + ++K + LPI+K+ + GK+ + L V T DL
Sbjct: 318 AKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGI-GKVTEKMLKALEVVTCTDLY- 375
Query: 276 FSEDKLQESYGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+ + S F+ +W +I+ G+ V+ G KS R ++S +
Sbjct: 376 --QQRALLSLLFSETSWQNFVHISLGLGSTHVE------RDGERKSMSTERTFSEMSSAE 427
Query: 334 HWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
LC+EL L DL++ T+T+
Sbjct: 428 EQYG-LCQELCRDLSKDLQKEGLKGKTVTI 456
>gi|375308031|ref|ZP_09773318.1| DNA polymerase IV [Paenibacillus sp. Aloe-11]
gi|375080362|gb|EHS58583.1| DNA polymerase IV [Paenibacillus sp. Aloe-11]
Length = 426
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 161/385 (41%), Gaps = 73/385 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQP-KLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R+I HVD++ FY V ++P K +GLPTAV +E + G ++ YEAR G+ M
Sbjct: 12 GRVILHVDMNAFYCSVHAAEEPEKYKGLPTAVAGSSELRRGVIVTCSYEARRLGISTGMV 71
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLTD 128
+A+ +CPQ+ ++Q D YR +SI + E SIDE YLD+T
Sbjct: 72 VQQARRICPQLIVIQ-------PDFHLYRRYSKAFMSIAYSYTPMLEATSIDECYLDITG 124
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ + TP E +E+ ND
Sbjct: 125 SRQ---FGTPLEIAEEIQRRV-------------ND------------------------ 144
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
E CS G+A NK+LAK+AS + KP + + V G+L LP
Sbjct: 145 -------------ELGLPCSIGVAPNKLLAKMASDLKKPRGISVLRLRDVPGILWKLPCS 191
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G K L ++ + T+G L K E L ++G TG+WL A GI+ V
Sbjct: 192 QLFGVGRKTADKLL-QMNIRTIGQLAKADEQMLIGAFGV-TGSWLKLAANGINHSPVSTE 249
Query: 309 LLP-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER------LCSDLEQNKRIAHTL 361
P KS G + P + + Q L + ++++ R L ++ R
Sbjct: 250 REPNKSIGHTTTL--PMDVVKLEEAQRVLLNISDQVARRLRRHGMLAGGIQLTIRTPDMK 307
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL 386
T S +S+ ++S + ++C L
Sbjct: 308 TFTRSQIRSTPTESAEDIYKEACAL 332
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 129/306 (42%), Gaps = 68/306 (22%)
Query: 4 ARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARN 61
A P SS R I H+D+D FY VE R+QP L+G P V W+G + A YEAR
Sbjct: 46 AEPMSS--RKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQ 99
Query: 62 YGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDE 121
+G+ +M AK +CPQ V VP YR +++ ++ R
Sbjct: 100 FGLHSAMSVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR----------- 141
Query: 122 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 181
Y DL + P SLDE D
Sbjct: 142 -YTDLIE----------PLSLDE-----------------------------AYLDVTRN 161
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
K + + E+R + ET T SAGIA NK LAK+AS KP Q +P V
Sbjct: 162 FKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAF 221
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
L++LP+ K+ + GK+ LG+ T GDL +F +L +G G L+++ RG
Sbjct: 222 LETLPLGKIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTD 279
Query: 302 GEEVQA 307
V+A
Sbjct: 280 ERPVKA 285
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 169/390 (43%), Gaps = 71/390 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
+RII HVD+D FY VE R P+L+ P AV L Y AR +GV+ +M G
Sbjct: 101 SRIIVHVDMDAFYAAVEMRDNPELKDKPMAV-----GSKSMLSTSNYLARRFGVRAAMPG 155
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
AK++CP L+ VP + YR SEV ILA+ S+DE YLD TD
Sbjct: 156 FIAKKLCPA--LIIVP-----PNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDH 208
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD------------ 177
L+ T E ++ I+G E+ + N + +E + C
Sbjct: 209 LSERLSWT----------EDKRTFIIGAENSEENKPLSGKQEQV-ECTSPILFEDSPSFV 257
Query: 178 ADHR-----------------DKLLACGVLI---VTELRMQVLKETEFTCSAGIAHNKML 217
AD +K + G + V E+R ++ ++T T SAGIA N ML
Sbjct: 258 ADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTTLTASAGIAPNMML 317
Query: 218 AKLASGMNKPAQQTTVP--FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 275
AK+ S NKP Q + ++K + LPI+K+ + GK+ + L V T DL
Sbjct: 318 AKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGI-GKVTEKMLKALEVVTCTDLY- 375
Query: 276 FSEDKLQESYGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 333
+ + S F+ +W +I+ G+ V+ G KS R ++S +
Sbjct: 376 --QQRALLSLLFSETSWQNFVHISLGLGSTHVE------RDGERKSMSTERTFSEMSSAE 427
Query: 334 HWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
LC+EL L DL++ T+T+
Sbjct: 428 EQYG-LCQELCRDLSKDLQKEGLKGKTVTI 456
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 154/362 (42%), Gaps = 54/362 (14%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
RI +D+D FY VE R P LR +P AV G + YEAR +GV+ +M G
Sbjct: 142 RIKVVIDMDMFYAAVEMRDNPILRHVPLAV-----GSIGMISTTNYEARKFGVRSAMPGF 196
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAA 130
K++CP +LV PV + Y E+ I A A S+DE LDLTD
Sbjct: 197 IGKKLCP--DLVFTPVR-----MEKYSAIAQEIRQIFAVYDPNFTAFSLDEAALDLTDYT 249
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR-------DK 183
E + ++ L KD N W+ C+
Sbjct: 250 R----------------EHWRKYVSQLSLKDWNHDG-----WMQDCETRQEGGHEMPESL 288
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS--VKGL 241
+ IV+E+R ++ +ET+ T SAGIA N MLAK+ S + KP Q + S +
Sbjct: 289 TMKIASAIVSEIRQRIFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEF 348
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+ LP++K+ + GK+ + L +TT+ ++ L + T TWL GI
Sbjct: 349 IRELPVRKVGGI-GKVMEKILAALNITTMQEVFD-RRAVLFHVFKERTATWLLRTCLGIQ 406
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
++ S KS+ K V+ + L Q+C + E L DL ++ A +
Sbjct: 407 EQQ--------SESERKSYSRETTFKAVSDFES-LKQICASICEHLAQDLAEDNVAARNI 457
Query: 362 TL 363
TL
Sbjct: 458 TL 459
>gi|308185805|ref|YP_003929936.1| DNA polymerase IV [Pantoea vagans C9-1]
gi|308056315|gb|ADO08487.1| DNA polymerase IV [Pantoea vagans C9-1]
Length = 351
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY VE R P+LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFYAAVEMRDNPQLRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A +++ I R + E S+DE YLD+TD+
Sbjct: 61 MALKLCPHLRLLP-----GRFD--AYKEASAQIRDIFTRYTPQIEPLSLDEAYLDVTDS- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
H G + + +AT
Sbjct: 113 ---------------------PHCHGSATLMAQEIRAT---------------------- 129
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +ET T SAGIA K LAK+AS +NKP Q + + G L SLP+ K+
Sbjct: 130 --------IFRETGLTASAGIAPIKFLAKIASDLNKPDGQYVITPPEMAGFLLSLPLAKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ E+G+ T GD+ K L + +G G LW + GI EV
Sbjct: 182 PGV-GKVSAKKLEEMGLVTCGDVQKADLALLLKRFG-KFGRVLWERSNGIDDREVIVERE 239
Query: 311 PKSHGSGKSF 320
KS G ++
Sbjct: 240 RKSLGVERTL 249
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 155/355 (43%), Gaps = 76/355 (21%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG-----LIAVGYEARNYGVKRSMRGDEA 73
+D FY VEQ P+LRG AV GGG + YEAR +GV+ ++ G +A
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAV-------GGGEPRGVVATASYEARKFGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+++CP + V K Y+ ++ +I Y DL +
Sbjct: 54 RKLCPHLIFV-------KPRFERYKQISMQIRAIFHE------------YTDLVE----- 89
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D K LI
Sbjct: 90 -----PLSLDE-----------------------------AYLDVTVNKKSNPSATLIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K +
Sbjct: 116 EIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS
Sbjct: 176 -GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
G+ ++F P L + + L+ + E+++ RL D +Q TL + S F
Sbjct: 234 VGAEETF--PENLTSEVYMLRELDHIAEDVARRL--DKQQVAGKTVTLKIKYSNF 284
>gi|125656402|gb|ABN48549.1| polymerase ATREV1-651 [Arabidopsis thaliana]
Length = 651
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 133/305 (43%), Gaps = 64/305 (20%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIA-VGYEARNYGVKRSMRGDE 72
I H+DLDCF+V V + + +L P AV + KG I+ Y AR YGVK M
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query: 73 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 131
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD--- 484
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
L +V+ E L S I
Sbjct: 485 ----------LSDVETEVLASTI------------------------------------- 497
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ +
Sbjct: 498 ----RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLP 553
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 312 KSHGS 316
KS G+
Sbjct: 613 KSIGA 617
>gi|406590293|ref|ZP_11064662.1| DNA polymerase IV [Enterococcus sp. GMD1E]
gi|404469362|gb|EKA14168.1| DNA polymerase IV [Enterococcus sp. GMD1E]
Length = 372
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 12 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 72 SAQKAYEICPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 125 E--------------------------------NKINCKSAIK----------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 136 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 193 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 251 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|212213211|ref|YP_002304147.1| DNA polymerase IV [Coxiella burnetii CbuG_Q212]
gi|212218115|ref|YP_002304902.1| DNA polymerase IV [Coxiella burnetii CbuK_Q154]
gi|215918927|ref|NP_819324.2| DNA polymerase IV [Coxiella burnetii RSA 493]
gi|206583812|gb|AAO89838.2| DNA polymerase IV [Coxiella burnetii RSA 493]
gi|212011621|gb|ACJ19002.1| DNA polymerase IV [Coxiella burnetii CbuG_Q212]
gi|212012377|gb|ACJ19757.1| DNA polymerase IV [Coxiella burnetii CbuK_Q154]
Length = 372
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 149/348 (42%), Gaps = 65/348 (18%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
+PV S R I HVD+DCFYV +E R PKLR P AV + G + Y AR
Sbjct: 14 LPVRESTSKKLRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSR-GVICTANYIAR 72
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASI 119
YGV+ ++ AK++CP L+ +PV ++ YR G ++ + E S+
Sbjct: 73 GYGVQSAISSSYAKKLCP--SLIILPV-----NMEKYRAIGHQIRGLFQEYTHLVEPLSL 125
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE YLD++D + T E+ E+ +K H L
Sbjct: 126 DEAYLDVSDCKIHQGSAT--RIAQEIREQIVKRHSL------------------------ 159
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
T SAG+A NK+LAK+AS NKP + S
Sbjct: 160 --------------------------TASAGVASNKLLAKVASAWNKPNGIKVILPSKAD 193
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
+ +LPI+K+ + GK+ + + T DL S + L +S+G + G L+ + RG
Sbjct: 194 DFVKTLPIEKIHGV-GKITAQKMKAMNIHTCSDLQALSREALSKSFG-SFGVTLYELCRG 251
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
I V+ + KS +F + + T++ + L L +L +RL
Sbjct: 252 IDPRSVEPNRIRKSVSVEHTF--SQDIATLSECEIELANLFNDLKQRL 297
>gi|225563209|gb|EEH11488.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 1162
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 48/351 (13%)
Query: 9 SGAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
SGAR I HVD D F+ V +K P+L P A+ + G + + Y AR++G+K
Sbjct: 358 SGARKYILHVDFDSFFAAVSLQKHPELVDQPVAIA-HGTGPGSEIASCNYPARSFGIKNG 416
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 126
M A ++CP ++++ D ++Y A + IL+ + SIDE +D+
Sbjct: 417 MWMKGALQMCPNLKVLPY-------DFAAYEEASRKFYDVILSIDAVVQSVSIDEALVDI 469
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T+ L +G +D ++ W + AD
Sbjct: 470 TN---------------------LCQDAVGSRGRDISEDSI----WREQEKADE------ 498
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
I +LR V ++T S GI N + A++A KPA Q + +V + +L
Sbjct: 499 ----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLT 554
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+K + + LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 555 VKDLPGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVG 613
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 614 FHPPRKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|374709016|ref|ZP_09713450.1| DNA polymerase IV [Sporolactobacillus inulinus CASD]
Length = 403
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 165/397 (41%), Gaps = 71/397 (17%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ AR+I HVD++ FY VE P+LR P A+ E + G ++ YEAR GV+ +M
Sbjct: 2 ANARVIFHVDMNSFYASVEIANHPELREKPLAIAGKAEERHGIVVTSSYEARKMGVRTTM 61
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLT 127
EAK+ CPQ+ +V+ P D + YR ++ ++L E+ASIDE YLD++
Sbjct: 62 TVREAKKKCPQL-IVRHP------DFALYRRTSEQLFTLLKDYTNIVEKASIDEGYLDVS 114
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ W+ HR L
Sbjct: 115 N-------------------------------------------WI------HRRHPLN- 124
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+ +E++ ++ +E CS GIA NK LAK+AS M KP T + + L LPI
Sbjct: 125 ---LASEIQSRIREELHLPCSIGIAPNKFLAKMASNMKKPMGITVIRKRELSQKLWPLPI 181
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
KM +G K + G+ T+GDL + D +++ YG N G L + A G V
Sbjct: 182 GKMHGVGPKTEEKF-SLAGIKTIGDLAASNPDAIEKKYGRN-GRRLHDFANGCDVRPVDP 239
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 367
+ G S P + + + L +L +L + + + + H
Sbjct: 240 DSWDRYKSIGHSMTLPHDTVDLKMIYETMQHLAGKLETKLKREHVASYELVVMIRYH--- 296
Query: 368 FKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAG 404
D + + S PLR +I F++FQA
Sbjct: 297 ----DWKTVTRHKSTMQPLR-SWQEILNLAFSVFQAN 328
>gi|170727937|ref|YP_001761963.1| DNA polymerase IV [Shewanella woodyi ATCC 51908]
gi|254781923|sp|B1KD33.1|DPO4_SHEWM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|169813284|gb|ACA87868.1| DNA-directed DNA polymerase [Shewanella woodyi ATCC 51908]
Length = 364
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 159/366 (43%), Gaps = 65/366 (17%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DC++ VE R P+LRG P AV ++ + G + YEAR +GV+ +M
Sbjct: 6 RKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRR-GVISTCNYEARAFGVRSAMASG 64
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP +L+ VP +S Y+ +++ I AR E S+DE YLD+T+
Sbjct: 65 YALKLCP--DLILVP-----GRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTECK 117
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ C+ A L
Sbjct: 118 Q------------------------------------------CQGSA----------TL 125
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R ++ + T T SAGIA K LAK+AS +NKP Q + + + +LP+ K+
Sbjct: 126 IAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQYVITPDMISSFITTLPLTKI 185
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G G L++ +G+TT G+L + + +L E +G G L A+GI +
Sbjct: 186 PGVGKVTGKKLED-IGLTTCGELQAYPKSELIERFG-KFGKILIERAQGIDERAISPHRE 243
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 370
KS G + + + T+ + QL +EL R+ + + L + FK
Sbjct: 244 RKSVGVETTL--AKDIYTLEQCHGVMPQLIQELGARMSRSAKGRSINKQVVKLKFNDFKQ 301
Query: 371 SDSDSR 376
+ + R
Sbjct: 302 TTIEHR 307
>gi|433463201|ref|ZP_20420761.1| DNA polymerase IV [Halobacillus sp. BAB-2008]
gi|432187847|gb|ELK45099.1| DNA polymerase IV [Halobacillus sp. BAB-2008]
Length = 415
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 178/428 (41%), Gaps = 91/428 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R+I HVD++ FY VE P L+G P A+ E + G ++ YEAR YGVK +M
Sbjct: 11 RVIFHVDMNSFYASVEAAYDPALKGKPLAIAGNPEERKGIVVTSSYEARKYGVKTTMLVG 70
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
EAK +CP + +V P + YR A E+ IL+ + SIDE Y+D+TD
Sbjct: 71 EAKRLCPDL-IVMRP------NFERYRAASKEMFKILSDVTPTVQPVSIDEGYMDITDCE 123
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ +PPE
Sbjct: 124 D---QGSPPE-------------------------------------------------- 130
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +++ ++ E + CS GIA NK LAK+AS M KP T + + L LPI++M
Sbjct: 131 IAEKIQQRIANELDLPCSIGIAPNKFLAKMASDMKKPMGITILRKRKLDEQLWPLPIEEM 190
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G K L+ LG+ +G L S +L+ G N G L N A G+ V +
Sbjct: 191 YGVGQKTAEKLRR-LGIENIGHLASHSALELKRVLGIN-GERLKNRANGLDDRPVDPDAV 248
Query: 311 P--KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
KS G+ + P TV H + + LS ++ + ++ +A + L
Sbjct: 249 HEFKSIGTSTTLPA----DTVDD--HEIRSVLRRLSGKVEARMKSKNVLARNVQL---MI 299
Query: 369 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 428
+ D +K ++S LR A T +LFQ +R F H++ +
Sbjct: 300 RYHD----RKTVTRSRQLRDFIAT----TDDLFQIAIRLF---------DEHWNQQPVRL 342
Query: 429 LSVSASKI 436
L V+AS +
Sbjct: 343 LGVTASDL 350
>gi|440288953|ref|YP_007341718.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048475|gb|AGB79533.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
Length = 351
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 145/344 (42%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR +GV+ +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTG 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + I +R E S+DE YLD++D+
Sbjct: 61 MALKLCPHLTLLP-----GRFD--AYKEASEHIREIFSRYTSLIEPLSLDEAYLDVSDSV 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
C A L
Sbjct: 114 H------------------------------------------CHGSA----------TL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + E + T SAGIA K LAK+AS +NKP Q + + V L +LP++K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQFVLTPADVPAFLKTLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + +G+ T D+ K L + +G G LW ++GI + L
Sbjct: 182 PGV-GKVSAAKLESMGLKTCEDVQKSDLAMLLKRFG-KFGRILWERSQGIDERAINNERL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + W CE + ERL +LE+
Sbjct: 240 RKSIGVERTL--------AEDIHDW--SACEAIIERLYPELERR 273
>gi|389842113|ref|YP_006344197.1| DNA polymerase IV [Cronobacter sakazakii ES15]
gi|387852589|gb|AFK00687.1| DNA polymerase IV [Cronobacter sakazakii ES15]
Length = 356
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 141/344 (40%), Gaps = 73/344 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ E + G + Y AR YGV+ +M
Sbjct: 7 RKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRE-RRGVISTANYPARKYGVRSAMPTA 65
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP + L+ G+ D +Y+ A + + I +R E S+DE YL
Sbjct: 66 MALKLCPHLTLLP-----GRFD--AYKEASAHIREIFSRYTSLIEPLSLDEAYL------ 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D H L
Sbjct: 113 ----------------------------------------------DVTHSPHCYGSATL 126
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E+R + E + T SAGIA K LAK+AS +NKP Q + V G L +LP+ K+
Sbjct: 127 MAKEIRQTIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPEEVPGFLRTLPLGKI 186
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L++ LG+ T D+ K L + +G G LW ++GI E+ +
Sbjct: 187 PGVGKVTAAKLES-LGLRTCEDVQKSDLAALLKRFG-KFGRVLWERSQGIDDREISSDRQ 244
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
KS G ++ + W CE + ERL +LE+
Sbjct: 245 RKSVGVERTL--------AEDIHEWAE--CEAIVERLYPELERR 278
>gi|262280632|ref|ZP_06058415.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
gi|262257532|gb|EEY76267.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
Length = 351
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 64/297 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VE R+QP+LR LP + ++ + A Y AR +G++ +M
Sbjct: 2 RKIIHIDMDAFYASVELREQPELRHLPVVISSHH--PRAVIAAASYPAREFGLRSAMSMS 59
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
+A+++CPQ+ +++ + YR +++ SI + E S+DE YLD+T
Sbjct: 60 QARKLCPQVVIIE-------PNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E+L ++ A
Sbjct: 110 ---------ENLKQI----------------------------------------ASATE 120
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ +R + + T T SAG+A NK LAK+AS NKP + S V + LP+KK+
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVANFIQDLPLKKI 180
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+G LQ +L + T+GDL K E L +G G L+ A+GI VQA
Sbjct: 181 PGVGKVTQEKLQ-QLQLHTLGDLQKIEEAILVHHFG-KYGQQLYLYAQGIDHRPVQA 235
>gi|256544709|ref|ZP_05472081.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
gi|256399598|gb|EEU13203.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
Length = 347
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 154/357 (43%), Gaps = 86/357 (24%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGL------IAVGYEARNYGVKRS 67
I H+D D FY E+ + P L+ P AV GGL Y+AR YG+ +
Sbjct: 4 IFHIDCDAFYASCEELRNPNLKNFPMAV--------GGLSNKSIITTANYKAREYGIHSA 55
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDL 126
M AK++CP + +V+V D Y+ EV I+ + E+ SIDE Y+ +
Sbjct: 56 MPVFIAKQLCPDLIMVKV-------DRKYYKKKSKEVFDIIESYSHTIEQVSIDEAYIFI 108
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
D N+ K K+LA
Sbjct: 109 ----------------------------------DNNEDK----------------KILA 118
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
+++ QVLKET S GI++NK LAKLAS NKP + V +L +L
Sbjct: 119 ------QKIQNQVLKETGIGVSIGISYNKFLAKLASDWNKPMGIKEISKEEVPEILKNLD 172
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
IKK+ LG K L+ ++GV + DLLK ++ LQ +G G +++ + RG +VQ
Sbjct: 173 IKKVHGLGNKSVQKLK-DIGVYKIADLLKLDQEFLQSLFG-KQGRYVYKVIRGEDNRKVQ 230
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
K G+ F + K + + ++ +E+S+++ DL+ A+T+ L
Sbjct: 231 TN--TKRKSIGREFTFRKNTKDLKILYAYI----DEISQKIEEDLKAKDIKAYTINL 281
>gi|314936051|ref|ZP_07843400.1| DNA polymerase IV [Staphylococcus hominis subsp. hominis C80]
gi|313655868|gb|EFS19611.1| DNA polymerase IV [Staphylococcus hominis subsp. hominis C80]
Length = 356
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 135/315 (42%), Gaps = 73/315 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYGVK 65
R I H+D+DCFY QVE R PKL+G P V GG G+++ YEAR YGV
Sbjct: 4 RRIVHIDMDCFYAQVEMRDNPKLQGKPVIV-------GGKASHRGVVSTASYEARKYGVH 56
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M +A ++CP V +A YR S+++ E++
Sbjct: 57 SAMPMSQAHKLCPNGYYV-------RARFDVYREVSSKIM---------------EIFKQ 94
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
T+ E P +LDE D H K
Sbjct: 95 YTEIVE-------PLALDE-----------------------------AYLDITHLVKPH 118
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I + +R + +T T SAG+++NK LAKLASGMNKP + + +V +L +L
Sbjct: 119 RSASKIASNIRKDIFNKTGLTSSAGVSYNKYLAKLASGMNKPNGMMVIHYENVHDILMNL 178
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I + GK + +E + T DL SE +L +G G L+ RGI EV
Sbjct: 179 DIGDFPGV-GKASKKIMHEHDIYTGKDLYSKSEFELIRWFG-KKGRGLYQKVRGIDDSEV 236
Query: 306 QARLLPKSHGSGKSF 320
+A + KS G+ ++F
Sbjct: 237 KASRIRKSVGTERTF 251
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 134/309 (43%), Gaps = 61/309 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R PKL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKP-VIVGGKASNRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+A ++CP V + +YR A +++ E++ T+ E
Sbjct: 63 QAHKLCPNGYYVT-------SRFGAYREASQQIM---------------EIFRSYTEIVE 100
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D H + I
Sbjct: 101 -------PMSLDE-----------------------------AYLDITHLVRPDMPASRI 124
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
+R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L L I
Sbjct: 125 ANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMHLDIGDFP 184
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+ GK + ++ G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 185 GV-GKASKKVMHDNGIFTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRVR 242
Query: 312 KSHGSGKSF 320
KS G+ ++F
Sbjct: 243 KSVGTERTF 251
>gi|422874487|ref|ZP_16920972.1| DNA polymerase IV [Clostridium perfringens F262]
gi|380304560|gb|EIA16848.1| DNA polymerase IV [Clostridium perfringens F262]
Length = 359
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 156/358 (43%), Gaps = 65/358 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY +EQR PK +G P +V + + G + YEAR YG+ +M
Sbjct: 5 RKIIHIDMDAFYASIEQRDNPKYKGKPL-IVGGDPNRRGVVATCSYEARKYGIHSAMPSL 63
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP+ + + + Y+ +V++IL Y +L +
Sbjct: 64 TAYKLCPKAIFI-------RPRMEVYKKVSRQVMNILNE------------YSNLVE--- 101
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE + KS RC L+
Sbjct: 102 -------PLSLDEAFVDVSKSK---------------------RCKG--------SATLM 125
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 126 ALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFF 185
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L N +GV DLLKFSE++L + + + G L+ ARGI V +
Sbjct: 186 GVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIR 243
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS GK ++ + + L+++ E +SE LC ++ K + TL + + FK
Sbjct: 244 KS--IGKEITLREDIEDIKEMIEILDKIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D F+ QVE R KL+G P +V G + YEAR YGV +M
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNLKLKGKP-VIVGGKASSRGVVSTASYEARKYGVHSAMPMS 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAA 130
+A ++CP V ++ +YR ++++SI + + E S+DE YL D
Sbjct: 63 QAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYL---DIT 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E + + P
Sbjct: 113 ELVRPDLPASK------------------------------------------------- 123
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 311 PKSHGSGKSF 320
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|228476340|ref|ZP_04061041.1| DNA polymerase IV [Staphylococcus hominis SK119]
gi|418618732|ref|ZP_13181587.1| ImpB/MucB/SamB family protein [Staphylococcus hominis VCU122]
gi|228269623|gb|EEK11129.1| DNA polymerase IV [Staphylococcus hominis SK119]
gi|374826611|gb|EHR90498.1| ImpB/MucB/SamB family protein [Staphylococcus hominis VCU122]
Length = 356
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 135/315 (42%), Gaps = 73/315 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYGVK 65
R I H+D+DCFY QVE R PKL+G P V GG G+++ YEAR YGV
Sbjct: 4 RRIVHIDMDCFYAQVEMRDNPKLQGKPVIV-------GGKASHRGVVSTASYEARKYGVH 56
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M +A ++CP V +A YR S+++ E++
Sbjct: 57 SAMPMSQAHKLCPNGYYV-------RARFDVYREVSSKIM---------------EIFKQ 94
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
T+ E P +LDE D H K
Sbjct: 95 YTEIVE-------PLALDE-----------------------------AYLDITHLVKPH 118
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I + +R + +T T SAG+++NK LAKLASGMNKP + + +V +L +L
Sbjct: 119 RSASKIASNIRKDIFNKTGLTSSAGVSYNKYLAKLASGMNKPNGMMVIHYQNVHDILMNL 178
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I + GK + +E + T DL SE +L +G G L+ RGI EV
Sbjct: 179 DIGDFPGV-GKASKKIMHEHDIYTGKDLYSKSEFELIRWFG-KKGRGLYQKVRGIDDSEV 236
Query: 306 QARLLPKSHGSGKSF 320
+A + KS G+ ++F
Sbjct: 237 KASRIRKSVGTERTF 251
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 154/364 (42%), Gaps = 79/364 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYGVK 65
R I H+D+D F+ QVE R PKLRG P V GG G+++ YEAR YGV
Sbjct: 4 RRIVHIDMDFFFAQVEMRDNPKLRGKPVIV-------GGKASSRGVVSTASYEARKYGVH 56
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M +A ++CP VQ YR +E++SI +
Sbjct: 57 SAMPMSQAHKLCPDGYYVQ-------GQYEKYRTISNEIMSI---------------FRS 94
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
T+A E P SLDE D H +
Sbjct: 95 YTEAVE-------PMSLDE-----------------------------AYLDITHLVRPD 118
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I +R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L
Sbjct: 119 LPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMAL 178
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I + GK + ++ G+ DL + +L +G G L+N ARGI V
Sbjct: 179 DIGDFPGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPV 236
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
++ + KS G+ ++F T + + Q ELS + L + ++ A T+T+
Sbjct: 237 KSSRIRKSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKI 290
Query: 366 SAFK 369
FK
Sbjct: 291 KTFK 294
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 156/359 (43%), Gaps = 76/359 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAV-GYEARNYGVKRSM 68
+R I H+D+D F+ VE+R L+G P + + GG G+++ YEAR YG+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNLALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CP+ + + YR G ++ I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPKAIFIS-------GNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ LG++S
Sbjct: 124 NNK------------------------LGIKS---------------------------- 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LPI
Sbjct: 132 AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V++
Sbjct: 192 EKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKS 249
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 363
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 250 DRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 127/297 (42%), Gaps = 66/297 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKG--GGLIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+GLP V W+G + A YEAR +G+ +M
Sbjct: 35 RKIIHIDMDAFYASVELREQPHLKGLPVVVA----WEGPRSVICAASYEARRFGLHSAMS 90
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
A+ +CPQ V +P + YR +V V+ TD
Sbjct: 91 VASAQRLCPQA--VYIP-----PNFPLYREISQQV---------------HAVFRQHTDL 128
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E P SLDE D + +
Sbjct: 129 IE-------PLSLDE-----------------------------AYLDVTRNFQNIPYAS 152
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ +R ++ ++T T SAG+A NK LAK+AS KP Q +P V L +LP +K
Sbjct: 153 QVAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPPEKVAEFLHTLPPEK 212
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
+ +G +Q+ LG+ TVGDLL+F +L +G G L+ +ARGI V+
Sbjct: 213 IPGVGKVTRLKMQS-LGIDTVGDLLRFERGELANLFG-KWGYRLYELARGIDNRAVK 267
>gi|345430002|ref|YP_004823122.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
gi|301156065|emb|CBW15536.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
Length = 377
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 139/313 (44%), Gaps = 63/313 (20%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ R I H+D+DCFY VE R+ P L+G P AV + + G L YEAR +G+ +M
Sbjct: 24 NSTRKIIHIDMDCFYASVEIRENPTLQGKPVAVGGSSRQR-GVLTTCNYEARKFGLHSAM 82
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+A + CP L+ VPV ++ Y+ +++ I R E S+DE YLD+T
Sbjct: 83 PTAQAIKKCP--NLILVPV-----NMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVT 135
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D + + T W+ +
Sbjct: 136 DCTQCSGSAT----------------------------------WIAQ------------ 149
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
E+R + E + T SAG+A K LAK+AS MNKP Q + V+ + +LP+
Sbjct: 150 ------EIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHEVEQFVKTLPL 203
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
KK+ + GK+ + ++G+ T D+ K + L +G G +W+ + GI E+QA
Sbjct: 204 KKIPGV-GKVTSERLLKMGLETCEDVQKLDQSILLNIFG-KMGKRIWDFSHGIDEREIQA 261
Query: 308 RLLPKSHGSGKSF 320
KS G ++
Sbjct: 262 HRERKSIGVERTL 274
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 148/349 (42%), Gaps = 77/349 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG---GLIAVG-YEARNYGVKRSMRGDEAK 74
+D FY VEQR P+L+G P V GG G++A YEAR YGV+ +M AK
Sbjct: 1 MDAFYASVEQRDFPELKGKPVVV-------GGEHRGVVAAASYEARKYGVRSAMSSVVAK 53
Query: 75 EVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAML 134
+ CPQI V K Y+ ++ +I + + TD E
Sbjct: 54 KKCPQIIFV-------KPRFHRYKEVSEQIRTI---------------FFEYTDLVE--- 88
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTE 194
P SLDE D H K + LI E
Sbjct: 89 ----PLSLDE-----------------------------AYLDVTHNKKGIVSANLIAKE 115
Query: 195 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 254
+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L++LPI++ +G
Sbjct: 116 IRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLENLPIERFYGIG 175
Query: 255 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 314
+ +LG+ DL + + L +G G ++I RGI EV+ + KS
Sbjct: 176 NVTANKMY-QLGIYKGKDLKEKPLEYLVTHFG-KMGGHYYDIVRGIHRSEVKPHRIAKSV 233
Query: 315 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
G ++ + T + L +L +EL R +E+ K +LTL
Sbjct: 234 GVEHTYVDD--IDTEQDIDKQLMRLAQELYRR----IEKKKVKGKSLTL 276
>gi|294625057|ref|ZP_06703705.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600642|gb|EFF44731.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 359
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 150/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AVRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQ 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T EV +
Sbjct: 111 AKTGMQLAT------EVAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L L +
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL + ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDA-------LDPHILRLAEKTWLATRRTERIGRTVVL 284
>gi|389601154|ref|XP_001564777.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504921|emb|CAM38848.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 758
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 137/319 (42%), Gaps = 72/319 (22%)
Query: 12 RIIAHVDLDCFYVQVEQ-RKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKR-SMR 69
R IAHVD+DCFY QVE R R P A++Q+ G IAV Y AR GVKR +
Sbjct: 2 RCIAHVDMDCFYAQVEAVRLGLDCRVTPFALLQW-----GNFIAVNYPARARGVKRFCLS 56
Query: 70 GDEAKEVCPQIELVQVP----------------VARGKADLSSYRNAGSEVVSILARKG- 112
DE + P +++ + + K L YR+A ++ +IL +
Sbjct: 57 PDEVRRELPDVQMSHIATYAVGESEYCYPEDPRINTHKVSLEPYRHASRQIFAILRSEPG 116
Query: 113 -RCERASIDEVYLDLTDAAEAMLAET----PPESLDEVDEEALKSHILGLESKDGNDSKA 167
+A IDE Y+D+T+AA LAE SLD + + ++ ++ D +A
Sbjct: 117 VMVGKAGIDEAYVDVTEAARRELAEVRAAAAGASLDPLVD------VMEPSTRLIEDRRA 170
Query: 168 TVKEWLC--------------------RCDAD-----------------HRDKLLACGVL 190
++ WLC C A R LL
Sbjct: 171 EMEAWLCARGTSLAAVFDEPMRALVRGECGAGLEGSRAFCVGADDPAYAERCLLLCAASR 230
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+V LR ++ E + CSAGIAHN++LAK S +KP QQT + L LP+ +
Sbjct: 231 VVHRLRQRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRGASALFELPLSGL 290
Query: 251 KQLGGKLGTSLQNELGVTT 269
+ GGKLG ++ G T
Sbjct: 291 RGFGGKLGAAVSVVCGGVT 309
>gi|227329181|ref|ZP_03833205.1| DNA polymerase IV [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 352
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 167/413 (40%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ + Y++ ++ I +R E S+DE YLD+TD
Sbjct: 61 TALRLCPHLTLL-------PGRMEVYKSTSRQIREIFSRYTSLIEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
S N S + E
Sbjct: 112 ----------------------------SPHCNGSATRIAE------------------- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R + E T SAGIA K LAK+AS +NKP Q + V L +LP++K+
Sbjct: 125 ---EIRRTIADELNLTASAGIAPIKFLAKIASELNKPNGQYVITPEQVDDFLLTLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ ++ L + +G G LW +GI ++ L
Sbjct: 182 PGVGKVTAKRLE-ERGLHTCADVRVYALADLLKEFG-KFGRVLWERCQGIDERQISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFK 369
KS G K+ + W + CE L E+L +LE + KR+ L + K
Sbjct: 240 RKSVGVEKTL--------AQDIHDW--EQCENLIEQLYEELEVRLKRVKPDLHIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ ++D + Q +E S GV+ G H +
Sbjct: 290 LKFDDFQQTTQEHVWPVLN-----KQDLLKIAQQTWQERRKSRGVRLVGLHVT 337
>gi|198276896|ref|ZP_03209427.1| hypothetical protein BACPLE_03101 [Bacteroides plebeius DSM 17135]
gi|198270421|gb|EDY94691.1| ImpB/MucB/SamB family protein [Bacteroides plebeius DSM 17135]
Length = 368
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 152/353 (43%), Gaps = 70/353 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY VEQR P+LRG P AV + K G + A YEAR +GV+ +M
Sbjct: 5 RKIIHIDMDAFYASVEQRDHPELRGKPIAVG--HAEKRGVVAAASYEARKFGVRSAMSSQ 62
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CPQ+ V+ G+ ++ Y++ A I E++ D TD E
Sbjct: 63 KAKKLCPQLIFVE-----GRMEV--YKSVS---------------AQIHEIFHDYTDLIE 100
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE D K + V I
Sbjct: 101 -------PISLDE-----------------------------AFLDVTENKKGIPLAVDI 124
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E++ ++ +E SAG+++NK LAK+AS KP T+ + LPI+
Sbjct: 125 AKEIKQRIRQELHLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQADEFIRRLPIEAFW 184
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G + LG+ L K S + LQ +G N G +N ARG+ V+A +
Sbjct: 185 GVGPITAKKMHT-LGIYNGETLRKCSLEMLQRQFGKN-GLIYFNFARGMDDRPVEAVRVR 242
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL-CSDLEQNKRIAHTLTL 363
KS G + + L S+ L + EL++RL D + N TLTL
Sbjct: 243 KSIGCEHTL--EKDLSAEMSLIIELYHVARELTDRLKAKDFKGN-----TLTL 288
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 164/367 (44%), Gaps = 47/367 (12%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV---GYEARNYGVKRS 67
+R I H+D+D FY VE R P LR P AV GG+ + Y AR YGV+ +
Sbjct: 85 SRTIVHLDMDAFYAAVEMRDNPALRDKPMAV--------GGIDMLSTSNYLARKYGVRAA 136
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 126
M G K++CP +LV VP + Y +V +L + S+DE Y+DL
Sbjct: 137 MPGFIGKKLCP--DLVIVP-----TNFDKYCAVSRQVRDVLGQYDPNFAPMSLDEAYMDL 189
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESK-----DGNDSKATVKEWLCRCDADHR 181
TD + L E+ PE + +H+ G SK + +D + E
Sbjct: 190 TDYLK--LRESLPEEM-----RTFYAHVEGCVSKKDSSTENHDEDGMLGETQTNVKMSET 242
Query: 182 DKLLACGVL-IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP--FSSV 238
+ C +V E+R ++ + T T SAGIA N MLAK+ S NKP Q +P ++
Sbjct: 243 SVVFGCDAEEVVREIRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNGQFCIPSDRQAI 302
Query: 239 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNI 296
+ +LP++K+ +G + L N LG++T L E + S F+ + + L +
Sbjct: 303 MDFIRNLPVRKVCGIGKVMAQQL-NALGISTCTHLY---EQRAVLSLLFSPVSSSHLLRV 358
Query: 297 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 356
A G+ ++ KS ++F + S L + C EL E L DL+
Sbjct: 359 ALGLGATRIERESERKSMSVERTF-------SELSKPADLYRKCWELCEALAKDLQDEGL 411
Query: 357 IAHTLTL 363
T+T+
Sbjct: 412 KGRTITI 418
>gi|261338292|ref|ZP_05966176.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
gi|270276954|gb|EFA22808.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
Length = 502
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 177/418 (42%), Gaps = 94/418 (22%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV----GYEARNY 62
D +G I+ H+D+D F+ VE + P+L+GLP + G G AV YEAR Y
Sbjct: 17 DETGCTIL-HIDMDAFFASVEIARHPELQGLPVII-------GTGHRAVVSAANYEARRY 68
Query: 63 GVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASID 120
G+ +M A +CP V +PV D YR ++ + + R E S+D
Sbjct: 69 GINSAMPAATAHRLCPN--GVFLPV-----DGRYYREISRQIFQTVFHQVTDRIEPVSVD 121
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
E Y+D++ A+L P + + W+
Sbjct: 122 ECYMDVS---AALLQWGSPSA---------------------------IARWI------- 144
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
R QV + TCS GIA NK++AK+AS KP +P +
Sbjct: 145 ---------------RAQVAERFHITCSVGIACNKLVAKMASTNAKPDGMLLIPANRSAD 189
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT-WLWNIARG 299
+ +P++ + +G L L N G+T+V +L +SE +L ++ G +G LW ARG
Sbjct: 190 FVQLMPLRGIPGIGPALERRL-NSWGITSVTELATYSEQELAQATGSASGAHHLWQAARG 248
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 359
I EV + KS GS +F + A V+ L++ CE+++ S L + + +A
Sbjct: 249 IDLREVVTQREEKSIGSEHTF--AQDTTDAAVVRSLLHRCCEDVA----STLRRKELLAR 302
Query: 360 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT-FNLFQAGLREFLGSFGVKT 416
T+T+ + + P S R T + D +L+ A L + G++T
Sbjct: 303 TVTV------------KLRLPDLSYMTRSYTMERPTDMGADLYAATLDQLYTMLGMRT 348
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 154/364 (42%), Gaps = 79/364 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-----GLIAVG-YEARNYGVK 65
R I H+D+D F+ QVE R PKLRG P V GG G+++ YEAR YGV
Sbjct: 4 RRIVHIDMDFFFAQVEMRDNPKLRGKPVIV-------GGKASSRGVVSTASYEARKYGVH 56
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M +A ++CP VQ YR +E++SI +
Sbjct: 57 SAMPMSQAHKLCPDGYYVQ-------GQYEKYRTISNEIMSI---------------FRS 94
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
T+A E P SLDE D H +
Sbjct: 95 YTEAVE-------PMSLDE-----------------------------AYLDITHLVRPD 118
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I +R + ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L
Sbjct: 119 LPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMAL 178
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
I + GK + ++ G+ DL + +L +G G L+N ARGI V
Sbjct: 179 DIGDFPGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPV 236
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
++ + KS G+ ++F T + + Q ELS + L + ++ A T+T+
Sbjct: 237 KSSRIRKSVGTERTFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKI 290
Query: 366 SAFK 369
FK
Sbjct: 291 KTFK 294
>gi|149185736|ref|ZP_01864052.1| DNA polymerase IV [Erythrobacter sp. SD-21]
gi|148830956|gb|EDL49391.1| DNA polymerase IV [Erythrobacter sp. SD-21]
Length = 370
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 135/315 (42%), Gaps = 66/315 (20%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGVKR 66
+ G R I HVD+D F+ VEQR P LRG P AV G G++A YEAR +GVK
Sbjct: 12 ADGLRKIIHVDMDAFFASVEQRDNPDLRGKPVAV---GGSSGRGVVAAASYEARKFGVKS 68
Query: 67 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLD 125
+M AK +CP + V K+ +YR ++ +I E S+DE YLD
Sbjct: 69 AMPSVTAKRLCPDLIFV-------KSRFDAYREVSQQIRAIFRHHTDLVEPLSLDEAYLD 121
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
+T E K G S + E
Sbjct: 122 VT------------------------------EDKLGIGSATRIAEL------------- 138
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
+R ++ +T T SAG+++NK LAKLAS NKP + + SL
Sbjct: 139 ---------IRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGADFVQSL 189
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
P+++ +G K G + LG+ T +L + L+ +G + +L+ ARGI V
Sbjct: 190 PVRRFHGVGPK-GAEKMDRLGIQTGAELAAKDIEWLRAHFG-SFADYLYRAARGIDLRPV 247
Query: 306 QARLLPKSHGSGKSF 320
++ + KS G ++F
Sbjct: 248 RSSRIRKSVGGERTF 262
>gi|189461486|ref|ZP_03010271.1| hypothetical protein BACCOP_02145 [Bacteroides coprocola DSM 17136]
gi|189431820|gb|EDV00805.1| ImpB/MucB/SamB family protein [Bacteroides coprocola DSM 17136]
Length = 374
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 149/343 (43%), Gaps = 64/343 (18%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
R + + +R I H+D+D FY VEQR P L+G P AV + K G + A YEAR YGV
Sbjct: 6 RQNMNTSRKIIHIDMDAFYASVEQRDNPDLKGKPVAV--GHSEKRGVVAAASYEARKYGV 63
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYL 124
+ +M +A ++CP++ V+ G+ D+ Y++ A I E++
Sbjct: 64 RSAMSSVKALKICPELIFVE-----GRMDV--YKSVS---------------AQIHEIFH 101
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
+ TD E P SLDE D K
Sbjct: 102 EYTDIIE-------PISLDE-----------------------------AFLDVTENKKD 125
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
+ V I E+++++ KE SAGI++NK LAK+AS + KP T+ + +
Sbjct: 126 IKLAVDIAREIKIRIRKELNLVASAGISYNKFLAKVASDLRKPDGLCTIHPDQAEEFIAG 185
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LPI+ +G + LG+ L S + L +G G ++ ARGI
Sbjct: 186 LPIEAFWGVGPVTAKKMHT-LGIYNGSTLRNCSLEMLTRQFG-KMGQVYYDFARGIDNRP 243
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
V+A + KS G + +LK+ ++ L + EL+ERL
Sbjct: 244 VEAIRIRKSIGCEHTLEKDISLKSSVIIE--LYHVACELAERL 284
>gi|258405893|ref|YP_003198635.1| DNA-directed DNA polymerase [Desulfohalobium retbaense DSM 5692]
gi|257798120|gb|ACV69057.1| DNA-directed DNA polymerase [Desulfohalobium retbaense DSM 5692]
Length = 397
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 160/357 (44%), Gaps = 79/357 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG----LIAVGYEARNYGVKRS 67
R I HVD+D F+ +EQ+ P+L+G P V GGG + A YEAR +GV+ +
Sbjct: 3 RWILHVDMDAFFASIEQQDYPELQGRPVIV-------GGGERGVVSAASYEARRFGVRSA 55
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDL 126
M +A+++CP R K Y+ +V+++L C E+ASIDE YLD+
Sbjct: 56 MPISQARKLCPNGNFCH---GRHK----RYKELSRQVMTVLDGFSPCVEQASIDEAYLDI 108
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
T E +L PP + ++A++
Sbjct: 109 T-GTERLLG--PPGEVGRALQQAIRVR--------------------------------- 132
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
T + S GIA NK +AK+AS +KP T + ++ LD LP
Sbjct: 133 ----------------TGLSASIGIAPNKFVAKIASDWDKPGGLTWIRAEQLQTFLDKLP 176
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
++K+ +G + ++L LGV +VG + +FSE + G G LW A GI EVQ
Sbjct: 177 VRKLPGVGPRT-SALLERLGVESVGAVRRFSEAFWTDRLG-EGGKQLWARAHGIDDSEVQ 234
Query: 307 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
PKS G+ + P+ + A + WL L E +ER+ +L + A T+TL
Sbjct: 235 PYHAPKSCGAEHTL--PQDTEDEAILISWL--LHE--AERIGRELRREVMEAGTVTL 285
>gi|392542511|ref|ZP_10289648.1| DNA polymerase IV [Pseudoalteromonas piscicida JCM 20779]
Length = 374
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 137/311 (44%), Gaps = 64/311 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R H+D+D FY VE R P+L +P A+ G L Y AR YGV+ +M
Sbjct: 24 VRKFIHIDMDTFYASVEMRDNPELATVPMAI--GGRSHRGVLSTANYIARQYGVRSAMSN 81
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
+AK++CPQ LV VP G+ ++ Y+ ++ +I AR E S+DE YLD+T+
Sbjct: 82 YQAKKLCPQ--LVIVP---GRMEV--YKAISQQIRTIFARYTELIEPLSLDEAYLDVTEC 134
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ C+
Sbjct: 135 QQ--------------------------------------------CNGS--------AT 142
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI ++R ++ ET T SAGIA K LAK+AS NKP Q +P V +D+LP+KK
Sbjct: 143 LIAEQIRADIVAETGLTASAGIAPIKFLAKIASDENKPNGQCVIPPHQVSAFIDALPLKK 202
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ + GK+ +G+ D+ SE +L++S+G G LW +GI V+
Sbjct: 203 IPGV-GKVTQQRLLAMGLEYGRDIKALSEIQLRQSFG-KFGAVLWRRCQGIDERRVETDR 260
Query: 310 LPKSHGSGKSF 320
+ KS G +F
Sbjct: 261 VRKSIGVETTF 271
>gi|339624645|ref|ZP_08660434.1| nucleotidyltransferase/DNA polymerase for DNA repair
[Fructobacillus fructosus KCTC 3544]
Length = 364
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 174/414 (42%), Gaps = 79/414 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSMR 69
R I HVD+D FY QVE R P LR +P + + + G G+IA Y AR GV +M
Sbjct: 11 RRILHVDIDAFYAQVEMRDNPALRKVPLGIGRDPDLHHGHGVIATANYIARRAGVHSAMG 70
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 128
EAK CP + V D YR ++ I E ++DE YLD+T
Sbjct: 71 SIEAKRACPNLVFV-------APDFEKYRAISGQIHQIFHEFTDMIEPVALDEAYLDVT- 122
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M A T
Sbjct: 123 -ANKMAAPT--------------------------------------------------- 130
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ +LR ++ +ET+ TCS G+++NK+LAKL S +KP T +P + + +LPIK
Sbjct: 131 --LAAQLRHRIWQETQLTCSVGVSYNKVLAKLGSEHHKPNGVTVIPHELAQDFVLNLPIK 188
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
+ +G K + ++GVT DL S D+L+ +G + G L+ AR V+ R
Sbjct: 189 DFRGVGKKTLEKFE-KMGVTDGRDLYAMSLDELRVQFG-SFGDVLYWQARATHFSPVKDR 246
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 368
+ +S G +F AL + V+ + L+E++ ++++ K + TLT+
Sbjct: 247 SVRQSVGKESTF--ELALHDRSEVE----MTFKTLAEKVVLNMKKKKLLGRTLTV---KI 297
Query: 369 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
+ D ++ K +++ P A + +F + +F ++ G +S
Sbjct: 298 RDDDFKTQTKGMTQAVPFELDAAFLARQAMLIFDEA---YPDNFSIRLLGLTFS 348
>gi|162146654|ref|YP_001601113.1| DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209543354|ref|YP_002275583.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
gi|161785229|emb|CAP54775.1| putative DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209531031|gb|ACI50968.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
Length = 381
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 151/365 (41%), Gaps = 82/365 (22%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
PD + R I HVD+D FY VEQR P LRG P AV + G + A YEAR YGV+
Sbjct: 14 PDPASLRRIIHVDMDAFYASVEQRDDPALRGRPLAV--GGSRQRGVVAAASYEARRYGVR 71
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+M A+ CP +L+ VP YR +++ +I AR G + S+DE YL
Sbjct: 72 SAMPSVTARRKCP--DLIFVP-----PRFDVYRAVSAQIHAIFARYTGLIQPLSLDEAYL 124
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+TD +D A+ D +A ++
Sbjct: 125 DVTD-----------PLIDRPSATAI-----------AQDIRAAIR-------------- 148
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
ET T SAG+++NK LAKLAS KP + ++S
Sbjct: 149 ----------------AETGLTASAGVSYNKFLAKLASDYRKPDGLYVITPRMGPRFVES 192
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP++ +G ++ +G+ T DL D L +G + + IARG
Sbjct: 193 LPVEAFHGIGPATAARMR-AMGIRTGLDLRAHDMDSLARHFG-KAAAFYYGIARGRDDRP 250
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS------ERLCSDLEQNKRIA 358
V+A KS G+ ++F +H ++ E LS +R+ + + +A
Sbjct: 251 VEADRRRKSVGTERTF------------EHDIHDWAEALSALDGMVDRVWGECRKRGLVA 298
Query: 359 HTLTL 363
T+T+
Sbjct: 299 RTVTV 303
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 124/298 (41%), Gaps = 66/298 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSMR 69
R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAMS 59
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDA 129
K +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 60 VATVKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE- 99
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
P SLDE D K +
Sbjct: 100 ---------PLSLDE-----------------------------AYLDVTRNFKNIPYAG 121
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGK 181
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 182 IPG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 237
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 14 IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEA 73
I H+D+DCFY +E R+ P L G P AV + +G L YEAR +G+ +M +A
Sbjct: 7 IIHIDMDCFYASIEIRENPNLLGKPVAVGGSSRQRGV-LTTCNYEARKFGLHSAMPTAQA 65
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ CP L+ VPV +++ Y+ +++ I R Y D+ +
Sbjct: 66 IKKCP--NLILVPV-----NMALYKQVSAQIHQIFQR------------YTDIIE----- 101
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE D H K I
Sbjct: 102 -----PLSLDE-----------------------------AYLDVTHCQKCSGSATWIAQ 127
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R + E T SAG+A K LAK+AS MNKP Q + + V + +L + K+ +
Sbjct: 128 EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLSLNKIPGV 187
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ + ++G+ T D+ F + L +G G +W+ + GI EVQA KS
Sbjct: 188 -GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKS 245
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
G ++ + T+ LN L +EL RL
Sbjct: 246 VGVEQTL--VENIHTIEQASALLNNLYDELIRRL 277
>gi|387929642|ref|ZP_10132319.1| DNA polymerase IV [Bacillus methanolicus PB1]
gi|387586460|gb|EIJ78784.1| DNA polymerase IV [Bacillus methanolicus PB1]
Length = 427
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 156/354 (44%), Gaps = 67/354 (18%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R+I HVD++ FY VE P L+G P A+ E + G ++ YEAR +GVK +M
Sbjct: 9 GRVILHVDMNSFYASVEMAFDPSLKGKPLAIAGDVEERRGIIVTCSYEARKFGVKTAMPL 68
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDA 129
EAK++CPQ+ ++ K + YR A + I+ + E SIDE Y+D+T++
Sbjct: 69 WEAKKLCPQLIVM-------KPNFERYRAASIRIFEIMRQYSDLVEPVSIDEGYMDITES 121
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
E TP E
Sbjct: 122 DE---FGTPIE------------------------------------------------- 129
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I ++ ++L++ + CS GI+ NK LAK+AS M KP T + V +L L + +
Sbjct: 130 -IARTIQKRLLEQLDLPCSIGISPNKFLAKMASDMKKPLGITILRKRDVPNVLWPLDVGQ 188
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
M +G K L ++G+ T+GDL +E +L+ G N G L A G V
Sbjct: 189 MHGVGKKTAEKLA-KIGIRTIGDLANANEIQLKNLLGIN-GARLKERANGNDRRLVD--- 243
Query: 310 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
P+S KS L S Q L Q+ + L+E++ + L++ K +A +++
Sbjct: 244 -PESVSDFKSVGNSTTLPKDISNQQVLFQVFDGLAEKVAARLKRKKVLAANISI 296
>gi|365853728|ref|ZP_09393993.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
gi|363711886|gb|EHL95592.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
Length = 366
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 162/363 (44%), Gaps = 86/363 (23%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSMR 69
R I H+D+D FY +E+R+ P L+ P V + GG G+++ Y AR YGV +M
Sbjct: 6 RHIIHIDMDAFYASIEEREDPSLKTKPLIVAKDPRKTGGRGVVSTANYVARKYGVHSAMS 65
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK---------GRCERASID 120
+A E+CP+ + +R +G E+ +++K + E ++D
Sbjct: 66 SSKALELCPK---------------AVFRFSGFELYRAVSQKIHDIFHEYTDKVESVALD 110
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
E YLD+TD K HI +DS
Sbjct: 111 EAYLDITDN---------------------KRHI--------SDS--------------- 126
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
+ G +I E +LK+T+ TCS G+++NK LAK AS KP T +
Sbjct: 127 ----IQVGRMIQAE----ILKQTKLTCSVGVSYNKFLAKEASDYAKPFGLTVIEPKDAIE 178
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
L LPI+K + +G K + ++LG+ DL+++S+ L + +G G L+ ARGI
Sbjct: 179 FLKRLPIEKFRGVGKKTVPKM-HDLGINDGADLIQWSQMDLIKHFG-KFGYVLYERARGI 236
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
V+ + KS G ++F GP Q ++ + ++E + ++++Q K+ T
Sbjct: 237 DKRPVEYARVRKSVGKERTF-GPE-----LENQSQVDDQLKHIAEMVAAEMQQKKKHGKT 290
Query: 361 LTL 363
L L
Sbjct: 291 LVL 293
>gi|307132282|ref|YP_003884298.1| DNA polymerase IV [Dickeya dadantii 3937]
gi|306529811|gb|ADM99741.1| DNA polymerase IV [Dickeya dadantii 3937]
Length = 352
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 151/371 (40%), Gaps = 80/371 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVICTANYPARRYGVHSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ + Y+ A ++ I +R E S+DE YLD+T
Sbjct: 61 TALRLCPHLTLL-------PGRMEVYKAASYQIRQIFSRYTSLIEPLSLDEAYLDVT--- 110
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D+ H CG
Sbjct: 111 ----------------------------------------------DSPH------CGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
L+ E+R + E T SAG+A K LAK+AS NKP Q + + ++ L +LP+
Sbjct: 119 ATLMAQEIRQAIFNELHLTASAGVAPIKFLAKVASEQNKPNGQYVISPAQMEAFLLALPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K+ + GK+ E G+ T D+ +++ +L +G G LW GI +V
Sbjct: 179 EKIPGV-GKVTAKRLAECGLHTCADVRRYALTELLREFG-KFGRILWERCHGIDERQVSP 236
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHAS 366
L KS G K+ + W CE L ERL +LE + +R+ L +
Sbjct: 237 DRLRKSVGVEKTL--------AQDIHDWTA--CEALIERLYDELELRLRRVRPDLHIARQ 286
Query: 367 AFKSSDSDSRK 377
K D R+
Sbjct: 287 GVKLKFDDFRQ 297
>gi|308068490|ref|YP_003870095.1| DNA polymerase IV [Paenibacillus polymyxa E681]
gi|305857769|gb|ADM69557.1| DNA polymerase IV 1 (Pol IV 1) [Paenibacillus polymyxa E681]
Length = 426
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 163/387 (42%), Gaps = 73/387 (18%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQP-KLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+G R+I HVD++ FY V ++P K +GLPTAV +E + G ++ YEAR G+
Sbjct: 10 AGGRVILHVDMNAFYCSVHAAEEPEKYKGLPTAVAGSSELRKGVIVTCSYEARRLGISTG 69
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDL 126
M +A+ +CPQ+ ++Q D YR +SI + E SIDE YLD+
Sbjct: 70 MVVQQARRICPQLIVIQ-------PDFHLYRRYSKAFMSIAYSYTPMLEATSIDECYLDI 122
Query: 127 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 186
+ + + TP E +E+
Sbjct: 123 SGSKQ---FGTPMEIAEEIQR--------------------------------------- 140
Query: 187 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 246
+V E CS G+A NK+LAK+AS + KP + + V +L +LP
Sbjct: 141 -----------RVEDELGLPCSIGVAPNKLLAKMASDLKKPRGISILRLRDVPNILWNLP 189
Query: 247 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 306
++ +G K L ++ + T+G L K E L +G TG+WL A GI+ V
Sbjct: 190 CGQLFGVGRKTADKLL-QMNIRTIGQLAKADEHMLVGVFGV-TGSWLKLAANGINHSPVS 247
Query: 307 ARLLP-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER------LCSDLEQNKRIAH 359
A P KS G + P + + Q L + ++++ R L ++ R
Sbjct: 248 AEREPNKSIGHTTTL--PMDVVKLEEAQRVLLNISDQVARRLRRHGMLAGGIQLTIRTPD 305
Query: 360 TLTLHASAFKSSDSDSRKKFPSKSCPL 386
T S +S+ ++S + ++C L
Sbjct: 306 MKTFTRSQVRSTPTESAEDIYKEACAL 332
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 GDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|449937528|ref|ZP_21804619.1| DNA polymerase IV [Streptococcus mutans 2ST1]
gi|450155496|ref|ZP_21878262.1| DNA polymerase IV [Streptococcus mutans 21]
gi|449164183|gb|EMB67255.1| DNA polymerase IV [Streptococcus mutans 2ST1]
gi|449237157|gb|EMC36039.1| DNA polymerase IV [Streptococcus mutans 21]
Length = 370
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 139/313 (44%), Gaps = 64/313 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R PKL+G P + GG G+++ Y AR +G+ +M
Sbjct: 11 SRKIIHIDMDAFFAAVEERDNPKLKGKPLVIGADPRQTGGRGVVSTANYLAREFGIHSAM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
EA E CPQ + + + + YR G +V I R E SIDE YLD+T
Sbjct: 71 SSKEAYERCPQAIFI-------RGNHTKYRQIGLQVREIFKRYTDLVEPMSIDEAYLDVT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ +K +K
Sbjct: 124 E------------------------------------NKLNIK----------------S 131
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
V I ++ + +E TCSAG+++NK LAKLAS +KP T + +G L +LPI
Sbjct: 132 AVKIAKLIQRDIWEEFHLTCSAGVSYNKFLAKLASDYDKPHGLTVILPQDAEGFLATLPI 191
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K L + L + T DL + SE L + +G G L+ ARGIS V+
Sbjct: 192 EKFYGVGKKSVEKL-HALHIFTGKDLQQVSEMTLIDLFG-RFGFDLYRKARGISNSPVKN 249
Query: 308 RLLPKSHGSGKSF 320
+ KS GS +++
Sbjct: 250 DRIRKSIGSERTY 262
>gi|422016594|ref|ZP_16363176.1| DNA polymerase IV [Providencia burhodogranariea DSM 19968]
gi|414092629|gb|EKT54303.1| DNA polymerase IV [Providencia burhodogranariea DSM 19968]
Length = 351
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 148/354 (41%), Gaps = 78/354 (22%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+DCFY +E R P LR +P AV + + G + YEAR YGV +M
Sbjct: 2 RKIIHIDMDCFYAAIEMRDDPSLRNVPIAVGGSAD-RRGVISTANYEARRYGVHSAMSTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP +++V ++ Y+ + IL+R E S+DE YLD++
Sbjct: 61 VALRLCPHLKVV-------PGRMALYKETSLHIRKILSRYTDLIEPLSLDEAYLDVS--- 110
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
D+DH L
Sbjct: 111 ----------------------------------------------DSDHYH---GSATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK+
Sbjct: 122 IAQTIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQNMAEFVLSLPLKKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L + +G+ T D+ ++ L +S G G LW GI + L
Sbjct: 182 PGVGKVTAQKLLD-MGLETCADVQQYDVVSLIKSMG-KFGQILWERCHGIDERPINPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 358
KS G ++ + HW L++L EEL RL + ++ + RIA
Sbjct: 240 RKSVGVERTL--------AEDIHHWEQCLPLLDELYEELKVRL-TKVKPDLRIA 284
>gi|374323250|ref|YP_005076379.1| DNA polymerase IV [Paenibacillus terrae HPL-003]
gi|357202259|gb|AET60156.1| DNA polymerase IV [Paenibacillus terrae HPL-003]
Length = 426
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 161/386 (41%), Gaps = 73/386 (18%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQP-KLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
G R+I HVD++ FY V ++P K +GLPTAV +E + G ++ YEAR G+ M
Sbjct: 11 GGRVILHVDMNAFYCSVHAAEEPEKYKGLPTAVAGSSELRRGVIVTCSYEARRLGISTGM 70
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEVYLDLT 127
+A+ +CPQ+ ++Q D YR +SI + E SIDE YLD+T
Sbjct: 71 VVQQARRICPQLIVIQ-------PDFHLYRRYSKAFMSIAYSYTPMLEATSIDECYLDIT 123
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + TP E +E+
Sbjct: 124 GSKQ---FGTPMEIAEEIQR---------------------------------------- 140
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
+V E CS G+A NK+LAK+AS + KP + + V +L +LP
Sbjct: 141 ----------RVADELGLPCSIGVAPNKLLAKMASDLKKPRGISVLRLRDVPNILWNLPC 190
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
++ +G K L+ ++ + T+G L K E L +G TG+WL A GI+ V
Sbjct: 191 GQLFGVGRKTADKLR-QMNIRTIGQLAKADEHMLIGVFGV-TGSWLKLAANGINHSPVNT 248
Query: 308 RLLP-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER------LCSDLEQNKRIAHT 360
P KS G + P + + Q L + ++++ R L ++ R
Sbjct: 249 EREPNKSIGHTTTL--PMDVVKLEEAQRVLLNISDQVARRLRRHGMLAGGIQLTIRTPEM 306
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPL 386
T S +S ++S + ++C L
Sbjct: 307 KTFTRSQVRSIPTESAEDIYKEACAL 332
>gi|168209362|ref|ZP_02634987.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
gi|170712467|gb|EDT24649.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
Length = 359
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 155/358 (43%), Gaps = 65/358 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY +EQR PK +G P +V + + G + YEAR YG+ +M
Sbjct: 5 RKIIHIDMDAFYASIEQRDNPKYKGKPL-IVGGDPNRRGVVATCSYEARKYGIHSAMPSL 63
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
A ++CP+ + + + Y+ +V++IL Y +L +
Sbjct: 64 TAYKLCPKAIFI-------RPRMEVYKKVSRQVMNILNE------------YSNLVE--- 101
Query: 132 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 191
P SLDE + KS RC L+
Sbjct: 102 -------PLSLDEAFVDVSKSK---------------------RCKG--------SATLM 125
Query: 192 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 251
E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 126 ALEIKERIFKEVALTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFF 185
Query: 252 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
+G L N +GV DLLKFSE++L + + + G L+ ARGI V +
Sbjct: 186 GVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIR 243
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 244 KS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|430837087|ref|ZP_19455063.1| DNA polymerase IV [Enterococcus faecium E0680]
gi|430487868|gb|ELA64576.1| DNA polymerase IV [Enterococcus faecium E0680]
Length = 373
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 13 SRKIIHIDMDAFFASVEERNHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 72
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 73 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 125
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 126 E--------------------------------NKINCKSAIK----------------- 136
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 137 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 193
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 194 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 251
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 252 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|430833777|ref|ZP_19451788.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430839165|ref|ZP_19457107.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430859625|ref|ZP_19477234.1| DNA polymerase IV [Enterococcus faecium E1552]
gi|430486182|gb|ELA63050.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430491162|gb|ELA67644.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430543162|gb|ELA83237.1| DNA polymerase IV [Enterococcus faecium E1552]
Length = 372
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 12 SRKIIHIDMDAFFASVEERNHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 72 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 125 E--------------------------------NKINCKSAIK----------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 136 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 193 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 251 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|419802488|ref|ZP_14327674.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|419845026|ref|ZP_14368313.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
gi|385190048|gb|EIF37498.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|386416952|gb|EIJ31444.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
Length = 374
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 139/313 (44%), Gaps = 63/313 (20%)
Query: 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSM 68
+ R I H+D+DCFY +E R+ P L+G P AV + + G L YEAR +G+ +M
Sbjct: 21 NSTRKIIHIDMDCFYASIEIRENPTLQGKPVAVGGSSRQR-GVLTTCNYEARKFGLHSAM 79
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLT 127
+A + CP L+ VPV ++ Y+ +++ I R E S+DE YLD+T
Sbjct: 80 PTAQAIKKCP--NLILVPV-----NMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVT 132
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
D + + T W+ +
Sbjct: 133 DCTQCSGSAT----------------------------------WIAQ------------ 146
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
E+R + E + T SAG+A K LAK+AS MNKP Q + V+ + +LP+
Sbjct: 147 ------EIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHEVEQFVKTLPL 200
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
KK+ + GK+ + ++G+ T D+ K + L +G G +W+ + GI E+QA
Sbjct: 201 KKIPGV-GKVTSERLLKMGLETCEDVQKLDQSILLNIFG-KMGKRIWDFSHGIDDREIQA 258
Query: 308 RLLPKSHGSGKSF 320
KS G ++
Sbjct: 259 YRERKSIGVERTL 271
>gi|409201309|ref|ZP_11229512.1| DNA polymerase IV [Pseudoalteromonas flavipulchra JG1]
Length = 374
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 132/311 (42%), Gaps = 64/311 (20%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
R H+D+D FY VE R P+L +P A+ G L Y AR YGV+ +M
Sbjct: 24 VRKFIHIDMDAFYASVEMRDNPELAKVPMAI--GGRSHRGVLSTANYIARQYGVRSAMSN 81
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
+AK++CPQ+ +V + Y+ ++ +I AR E S+DE YLD+T+
Sbjct: 82 YQAKKLCPQLVIV-------SGRMEVYKAISQQIRTIFARYTELIEPLSLDEAYLDVTEC 134
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
+ C+
Sbjct: 135 QQ--------------------------------------------CNGS--------AT 142
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
LI ++R + ET T SAGIA K LAK+AS NKP Q +P V +D+LP+KK
Sbjct: 143 LIAEQIRADIFAETGLTASAGIAPIKFLAKIASDENKPNGQCVIPPHQVSAFIDALPLKK 202
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 309
+ + GK+ +G+ D+ SE +L++S+G G LW +GI V+
Sbjct: 203 IPGV-GKVTQQRLLAMGLEYGRDIKALSETQLRQSFG-KFGAVLWRRCQGIDERRVETDR 260
Query: 310 LPKSHGSGKSF 320
+ KS G +F
Sbjct: 261 VRKSIGVETTF 271
>gi|430853560|ref|ZP_19471288.1| DNA polymerase IV [Enterococcus faecium E1258]
gi|430540641|gb|ELA80843.1| DNA polymerase IV [Enterococcus faecium E1258]
Length = 372
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 12 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 72 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 125 E--------------------------------NKINCKSAIK----------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 136 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 193 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 251 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|421082849|ref|ZP_15543729.1| DNA polymerase IV [Pectobacterium wasabiae CFBP 3304]
gi|401702465|gb|EJS92708.1| DNA polymerase IV [Pectobacterium wasabiae CFBP 3304]
Length = 352
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/413 (27%), Positives = 167/413 (40%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 130
A +CP + L+ + Y++ ++ I AR E S+DE YLD+TD
Sbjct: 61 TALRLCPHLTLL-------PGRMEVYKSTSRQIREIFARYTPLIEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
S N S + E
Sbjct: 112 ----------------------------SPHCNGSATRIAE------------------- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R + E T SAGIA K LAK+AS +NKP Q + V L LP++K+
Sbjct: 125 ---EIRRTIANELNLTASAGIAPIKFLAKVASELNKPNGQYVITPDQVDDFLLVLPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ ++ L + +G G LW +GI + L
Sbjct: 182 PGVGKVTAKRLE-ERGLHTCADVRGYALADLLKEFG-KFGRVLWERCQGIDDRRISPDRL 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFK 369
KS G KT+A H +Q CE L E+L +LE + KR+ L + K
Sbjct: 240 RKSVGVE---------KTLAQDIHDWDQ-CENLIEQLYLELEVRLKRVKPDLHIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ ++D L Q +E S GV+ G H +
Sbjct: 290 LKFDDFQQTTQEHVWPMLN-----KQDLLRLAQQTWQERRKSRGVRLVGLHVT 337
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 157/380 (41%), Gaps = 75/380 (19%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
P R I HVD+D FY VEQR +LRG P AV + G + A YEAR +GV+
Sbjct: 4 PTEERVRRIVHVDMDAFYASVEQRDNSELRGRPVAV---GGIRRGVVAAASYEARRFGVR 60
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 125
+M A +CP + V K YR +V +++ +
Sbjct: 61 SAMPSMRAMRLCPDLVFV-------KPRFDVYRAVSQQV---------------RDIFFE 98
Query: 126 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 185
T E P SLDE L+ D + +
Sbjct: 99 YTPLVE-------PLSLDEAY----------LDLTDYLQGRTATR--------------- 126
Query: 186 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 245
I E+R ++ + T T SAG+++NK LAKLAS KP +P + + L
Sbjct: 127 -----IAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGPEFVHGL 181
Query: 246 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
PI + +G +++ G+ T DL + + + L +G +GT+ WNIARGI EV
Sbjct: 182 PIGRFHGIGPATAARMESH-GILTGADLARQTLEFLTARFG-KSGTYYWNIARGIDTREV 239
Query: 306 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 365
+ + KS G+ ++ L+ + + L E L++++ R+ T+TL
Sbjct: 240 KPNRIRKSIGAENTY--FEDLRDLPAAHEAL----EVLADKVWRHATNAGRVGRTVTL-- 291
Query: 366 SAFKSSDSDSRKKFPSKSCP 385
K D R+ ++S P
Sbjct: 292 ---KVKYGDFRQITRARSLP 308
>gi|293550615|ref|ZP_06673283.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|431444918|ref|ZP_19513647.1| DNA polymerase IV [Enterococcus faecium E1630]
gi|291603236|gb|EFF33420.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|430586080|gb|ELB24346.1| DNA polymerase IV [Enterococcus faecium E1630]
Length = 373
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 13 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 72
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 73 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 125
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 126 E--------------------------------NKINCKSAIK----------------- 136
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 137 ---IARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 193
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 194 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 251
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 252 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|271501762|ref|YP_003334788.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
gi|270345317|gb|ACZ78082.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
Length = 352
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 164/416 (39%), Gaps = 85/416 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVICTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ + Y+ ++ +I +R E S+DE YLD+T
Sbjct: 61 TALRLCPHLTLL-------PGRMEVYKATSLQIRAIFSRYTSLIEPLSLDEAYLDVT--- 110
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG-- 188
D+ H CG
Sbjct: 111 ----------------------------------------------DSPH------CGGS 118
Query: 189 -VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
L+ E+R + E T SAG+A K LAK+AS NKP Q + + ++ L +LP+
Sbjct: 119 ATLMAQEIRQTIFDELHLTASAGVAPIKFLAKVASEQNKPNGQCVIAPTQMEAFLLALPL 178
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K+ +G L E G+ T D+ ++ +L +G G LW GI +V
Sbjct: 179 EKIPGVGNVTARRLA-ECGLHTCADVRRYPLSELLREFG-KFGRVLWERCHGIDERQVSP 236
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHAS 366
L KS G K+ + W CE L ERL +LE + +R+ L +
Sbjct: 237 DRLRKSVGVEKTL--------ARDIHDWTA--CEALIERLYDELELRLRRVRPDLHIARQ 286
Query: 367 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
K D R+ P+ + D L + + + GV+ G H S
Sbjct: 287 GVKLKFDDFRQTTQEHVWPVLN-----KPDLLRLARESWEQRRDARGVRLVGLHVS 337
>gi|238501556|ref|XP_002382012.1| DNA damage repair protein Mus42, putative [Aspergillus flavus
NRRL3357]
gi|317142698|ref|XP_001819029.2| DNA damage repair protein Mus42 [Aspergillus oryzae RIB40]
gi|220692249|gb|EED48596.1| DNA damage repair protein Mus42, putative [Aspergillus flavus
NRRL3357]
Length = 1147
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 156/358 (43%), Gaps = 48/358 (13%)
Query: 2 PVARPDSSGAR-IIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
P + + GAR I HVD DCF+ V + P G P AV + G + + Y AR
Sbjct: 352 PAKKKSAPGARRYIMHVDFDCFFAAVSTLRNPGYEGKPVAVA-HGTGSGSEIASCNYAAR 410
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASI 119
+GVK M A + CP ++++ D +Y A + S IL+ G + SI
Sbjct: 411 AHGVKNGMWMKGALQACPDLKVLPY-------DFPAYEEASQKFYSAILSLDGIVQSVSI 463
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE +D+T LE+ G+D + + L R A
Sbjct: 464 DEALIDVTTQC--------------------------LEA-GGSDGRGISEGSLYREQAK 496
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
+ I LR V +T S GI N + AK+A KPA Q + +V
Sbjct: 497 ADE--------IAQSLREAVKHKTGCAVSIGIGGNILQAKVALRKAKPAGQFQLKPDAVL 548
Query: 240 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 299
+ L ++ + +G LG L+ ELGV V D+ + + +KL + G G +W+ ARG
Sbjct: 549 DFIGGLTVQDLPGVGHSLGGKLE-ELGVKLVKDVRELTREKLTSTLGPKLGAKIWDYARG 607
Query: 300 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
I EV + ++ KS + ++ G R + A ++ LCEEL RL +L + K++
Sbjct: 608 IDRTEVGSEVMRKSVSAEVNW-GIRFVNQ-AQADDFVQSLCEELHRRLVENLVKGKQL 663
>gi|431760524|ref|ZP_19549122.1| DNA polymerase IV [Enterococcus faecium E3346]
gi|430623868|gb|ELB60539.1| DNA polymerase IV [Enterococcus faecium E3346]
Length = 372
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 12 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 71
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 72 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 124
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 125 E--------------------------------NKINCKSAIK----------------- 135
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 136 ---IARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 192
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 193 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 250
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 251 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|384539827|ref|YP_005723910.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
gi|336035170|gb|AEH81101.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
Length = 378
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 137/316 (43%), Gaps = 66/316 (20%)
Query: 8 SSGARI--IAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVK 65
+ G R+ I H+D+D FY VEQR P+LRG P A V Y E + G + A YEAR +GV
Sbjct: 20 TPGGRVRKIIHIDMDAFYASVEQRDNPELRGKPVA-VGYPEAR-GVVAAASYEARKFGVH 77
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 124
+M AK CP +L+ VP YR ++ +I A E S+DE YL
Sbjct: 78 SAMPSVTAKRKCP--DLIFVP-----HRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYL 130
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D+T E LK L E
Sbjct: 131 DVT--------------------ENLKGLRLATE-------------------------- 144
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
I E+R ++ +T T SAG+++NK LAK+AS KP + + +
Sbjct: 145 ------IAEEIRTRIKAKTHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGPEFVQA 198
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP+KK +G ++ LG+ T DL LQ+ +G +G + + IARGI E
Sbjct: 199 LPVKKFHGVGPATAEKMKR-LGIETGADLKSRDLAFLQQHFG-KSGPYFYWIARGIDERE 256
Query: 305 VQARLLPKSHGSGKSF 320
V+ + KS G+ +F
Sbjct: 257 VKPDRIRKSIGAEDTF 272
>gi|119469761|ref|XP_001257973.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
gi|119406125|gb|EAW16076.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
Length = 1154
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 154/354 (43%), Gaps = 47/354 (13%)
Query: 5 RPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGV 64
+P R I HVD D F+ V K P+L G P A+ + G + + Y AR G+
Sbjct: 366 KPVPGARRYILHVDFDSFFAAVSTLKHPELIGQPVAIA-HGTGSGSEIASCNYPARARGI 424
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVY 123
K M A + CP+++++ D +Y A + S +LA G + SIDE
Sbjct: 425 KNGMWMKGALQACPELKVLPY-------DFPAYEEASKKFYSAVLAVDGVVQSVSIDEAL 477
Query: 124 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 183
+D+T + LE+ G+D + + + R A +
Sbjct: 478 VDIT--------------------------MQCLEA-GGSDGRGISEGSIYREQAKADE- 509
Query: 184 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 243
I LR V T S GI N +LAK+A KPA Q + SV L+
Sbjct: 510 -------IAQNLRESVKAATGCDVSVGIGGNILLAKVALRKAKPAGQFQLKPDSVLDLIG 562
Query: 244 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 303
L ++ + +G LG L+ ELGV V D+ S +KL G TG +W ARGI
Sbjct: 563 DLTVQDLPGVGYSLGAKLE-ELGVKFVKDVRDVSREKLINHLGPKTGLKIWEYARGIDRT 621
Query: 304 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 357
EV +L KS + ++ G R + + + ++ LCEEL RL +L + K++
Sbjct: 622 EVGNEVLRKSVSAEVNW-GIRFVNQTQA-EDFVKSLCEELHRRLSDNLVKGKQL 673
>gi|22095606|sp|P58963.1|DPO4_ESCFE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19568915|gb|AAL91969.1|AF483106_1 DNA polymerase DinB [Escherichia fergusonii]
Length = 331
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 142/334 (42%), Gaps = 73/334 (21%)
Query: 22 FYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIE 81
F+ VE R P LR +P A+ E + G + Y AR +GV+ +M A ++CP +
Sbjct: 1 FFAAVEMRDNPALRDIPIAIGGSRE-RRGVISTANYPARKFGVRSAMPTGMALKLCPHLT 59
Query: 82 LVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAETPPE 140
L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 60 LLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH--------- 103
Query: 141 SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVL 200
C A LI E+R +
Sbjct: 104 ---------------------------------CHGSA----------TLIAQEIRQTIF 120
Query: 201 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 260
E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+ + GK+ +
Sbjct: 121 NELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKIPGV-GKVSAA 179
Query: 261 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 320
+G+ T GD+ K L + +G G LW ++GI +V + L KS G ++
Sbjct: 180 KLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTM 238
Query: 321 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 354
+ HW CE + ERL +LE+
Sbjct: 239 --------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|302800971|ref|XP_002982242.1| hypothetical protein SELMODRAFT_445125 [Selaginella moellendorffii]
gi|300149834|gb|EFJ16487.1| hypothetical protein SELMODRAFT_445125 [Selaginella moellendorffii]
Length = 1188
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 148/343 (43%), Gaps = 80/343 (23%)
Query: 7 DSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI-AVGYEARNYGVK 65
D + + I HVD+DCF+V V R +P+L G P V + KG G I + YEAR +GVK
Sbjct: 298 DPALEKSIIHVDMDCFFVSVVTRNRPELDGKPVGVCHSDSSKGTGEISSANYEARTFGVK 357
Query: 66 RSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYL 124
M AK+ CP +E+V D Y ++ IL R +A S DE YL
Sbjct: 358 AGMFVKTAKKCCPNLEIVSY-------DFEGYEQVADKLYEILHRHSPLVQAISCDEAYL 410
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
D++ + P S+ A++ I +AT RC
Sbjct: 411 DVSGMGD-------PASI----ASAIRREIF----------EAT------RC-------- 435
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
T SAGI+ N +LA+LA+ KP Q + + + +
Sbjct: 436 ---------------------TASAGISANILLARLATKKAKPNGQFQIHLQEAEEFMMN 474
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP++++ +G L L + L + T DL + + L++ +G TG L+N ARGI +
Sbjct: 475 LPVEELPGVGWVLREKL-HALKLFTCSDLRLLTSETLRKHFGAKTGETLYNHARGIDHRK 533
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
VQA KS G A Q++L L EE++ RL
Sbjct: 534 VQAPQEKKSIG--------------AEAQNFLVTLSEEVASRL 562
>gi|307545563|ref|YP_003898042.1| DNA polymerase IV [Halomonas elongata DSM 2581]
gi|307217587|emb|CBV42857.1| DNA polymerase IV [Halomonas elongata DSM 2581]
Length = 348
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 135/337 (40%), Gaps = 65/337 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H D DCFY VE R P LR +P A+ E +G + Y AR YG+ +M
Sbjct: 2 RKILHADCDCFYAAVEMRDNPALRDIPLAIGGTREQRGV-IATCNYPARAYGIHSAMPTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ D YR ++ I E S+DE +LD+TD
Sbjct: 61 RALRLCPHLTLL-------PGDFDKYRAVSRQLQDIFHELTPVIEPLSLDEAFLDVTDV- 112
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
++ S + +WL R
Sbjct: 113 -----------------------------ENFQGSATWMAQWLKR--------------- 128
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ L T T S G+A K LAK+AS KP T +P V + +LP+ K+
Sbjct: 129 -------ECLARTGITVSVGVAPAKFLAKIASDWEKPDGLTVIPPEQVDTFVATLPVHKL 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ LG+ T DL + ++L + +G G L+ +ARGI V+
Sbjct: 182 HGVGPATAARLEA-LGIATCSDLRRLPFERLIDEFG-KFGRRLFELARGIDERPVRTERE 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS +F + L ++S Q L LCE L ERL
Sbjct: 240 RKSISVETTF--EQDLPDLSSAQQALAPLCERLKERL 274
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 66/299 (22%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGG--LIAVGYEARNYGVKRSM 68
+R I H+D+D FY VE R+QP L+G P V W+G + A YEAR +G+ +M
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVA----WEGARSVICAASYEARQFGLHSAM 58
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTD 128
AK +CPQ V VP YR +++ ++ R Y DL +
Sbjct: 59 SVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTDLIE 99
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
P SLDE D K +
Sbjct: 100 ----------PLSLDE-----------------------------AYLDVTRNFKNIPYA 120
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+
Sbjct: 121 GDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLG 180
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
K+ + GK+ LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 181 KIPGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 146/343 (42%), Gaps = 70/343 (20%)
Query: 6 PDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVG-YEARNYGV 64
PD+ +II HVD+D F+ VEQR P LRG P AV K G++A YEAR +GV
Sbjct: 4 PDAPQRKII-HVDMDAFFASVEQRDNPDLRGKPVAV---GGSKARGVVAAASYEARVFGV 59
Query: 65 KRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYL 124
+ +M A+ +CP + V K+ YR+ ++ I AR +
Sbjct: 60 RSAMPSVTAQRLCPDLIFV-------KSRFDVYRSVSQQIREIFAR------------HT 100
Query: 125 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 184
DL + P SLDE + S E
Sbjct: 101 DLIE----------PLSLDEAYLDVTASGRPATE-------------------------- 124
Query: 185 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 244
I E+R ++L T T SAG+++NK LAKLAS NKP + +
Sbjct: 125 ------IAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPHEGAAFVAG 178
Query: 245 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 304
LP+K+ +G ++ G+ T DL S + LQ ++G + + + ARGI
Sbjct: 179 LPVKRFHGVGPVTAAKMER-FGIRTGADLAAKSREWLQGNFG-RSADYYYGAARGIDHRP 236
Query: 305 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
V+A + KS G+ ++F +T A + L + E + ER+
Sbjct: 237 VRASRVRKSIGAERTF--SEDFRTRADLLAALEPVIEAVWERI 277
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 158/351 (45%), Gaps = 80/351 (22%)
Query: 19 LDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG----GLIAVG-YEARNYGVKRSMRGDEA 73
+D F+ VEQ P+LRG AV GG G++A YEAR YGV+ ++ G +A
Sbjct: 1 MDAFFASVEQLDFPELRGKAIAV-------GGAERRGVVATASYEARRYGVRSAISGAQA 53
Query: 74 KEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAM 133
+ +CP L+ VP Y+ ++ I + D TD E
Sbjct: 54 RRLCPH--LIFVP-----PRFERYKEISLQIRGI---------------FHDYTDLVE-- 89
Query: 134 LAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVT 193
P SLDE L + + N+ AT LI
Sbjct: 90 -----PLSLDEA--------YLDVTTNKKNNPSAT---------------------LIAQ 115
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R ++ +ET T SAGI+ NK +AK+AS KP QTT+ V+ LD L ++K +
Sbjct: 116 EIRQRIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITADEVQDFLDVLDVRKFYGI 175
Query: 254 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 313
GK+ ELG+ DL + S L+ ++G N+G + + ++RGI EVQ + KS
Sbjct: 176 -GKVTAQKMYELGIFKGKDLREKSLAFLERNFG-NSGLYFYELSRGIHRAEVQPFRIRKS 233
Query: 314 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA-HTLTL 363
G+ +F + ++ L+ + E+++ RL Q + +A T+TL
Sbjct: 234 VGAEHTF--AENFTSEIYMEEALSAIAEDVARRL-----QRQEVAGRTITL 277
>gi|110799334|ref|YP_696252.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
gi|123344702|sp|Q0TQ38.1|DPO4_CLOP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110673981|gb|ABG82968.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
Length = 359
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 154/359 (42%), Gaps = 67/359 (18%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I H+D+D FY +EQR PK +G P +V + + G + YEAR YG+ +M
Sbjct: 5 RKIIHIDMDAFYASIEQRDNPKYKGKPL-IVGGDPNRRGVVATCSYEARKYGIHSAMPSL 63
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 130
A ++CP+ + + + Y+ +V++IL E S+DE ++D++ +
Sbjct: 64 TAYKLCPKAIFI-------RPRMEVYKKVSRQVMNILNEYSNLVEHLSLDEAFVDVSKSK 116
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
RC L
Sbjct: 117 --------------------------------------------RCKG--------SATL 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 125 MALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKF 184
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L N +GV DLLKFSE++L + + + G L+ ARGI V +
Sbjct: 185 FGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRI 242
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 369
KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 243 RKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|50122391|ref|YP_051558.1| DNA polymerase IV [Pectobacterium atrosepticum SCRI1043]
gi|81644156|sp|Q6D1H8.1|DPO4_ERWCT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49612917|emb|CAG76367.1| DNA polymerase IV [Pectobacterium atrosepticum SCRI1043]
Length = 352
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 167/413 (40%), Gaps = 79/413 (19%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCFY +E R P+LR +P A+ + + G + Y AR YGV+ +M
Sbjct: 2 RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSAD-RRGVISTANYPARRYGVRSAMATA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A +CP + L+ + Y++ ++ I +R E S+DE YLD+TD
Sbjct: 61 TALRLCPHLTLL-------PGRMEVYKSTSRQIREIFSRYTSLIEPLSLDEAYLDVTD-- 111
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
S N S + E
Sbjct: 112 ----------------------------SPHCNGSATRIAE------------------- 124
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
E+R + E T SAGIA K LAK+AS +NKP Q + V L +LP++K+
Sbjct: 125 ---EIRRTIADELNLTASAGIAPIKFLAKVASELNKPNGQYVITPEQVDDFLLALPLEKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E G+ T D+ ++ L +++G G LW +GI ++
Sbjct: 182 PGVGKVTAKRLE-ERGLHTCADVRVYALADLLKAFG-KFGRVLWERCQGIDDRQISPDRQ 239
Query: 311 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFK 369
KS G K+ + +W CE L E+L +LE + KR+ L + K
Sbjct: 240 RKSVGVEKTL--------AQDIHNW--DQCENLIEQLYQELEVRLKRVKPDLHIARQGVK 289
Query: 370 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 422
D ++ P+ ++D L Q +E S GV+ G H +
Sbjct: 290 LKFDDFQQTTQEHVWPMLN-----KQDLLKLAQQTWQERRKSRGVRLVGLHVT 337
>gi|119899076|ref|YP_934289.1| DNA polymerase IV [Azoarcus sp. BH72]
gi|119671489|emb|CAL95402.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
Length = 357
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 131/303 (43%), Gaps = 63/303 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAV-GYEARNYGVKRSMRG 70
R I H D DCFY VE R P L G P AV E +G +IA YEAR +GV +M
Sbjct: 2 RKIIHCDCDCFYAAVEVRDNPALAGKPVAVGGRAETRG--VIATCSYEARAFGVHSAMST 59
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 130
A + CPQ L+ +P D YR A ++++I Y D T
Sbjct: 60 ARALQRCPQ--LILLP-----PDFERYRAASRQILAI---------------YRDYTALV 97
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
E P SLDE +L D D+ L
Sbjct: 98 E-------PLSLDEA--------------------------YL---DVSGVDRCKGSATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
+ E+R ++ E T SAGIA NK LAK+AS NKP Q V V + +LP+KK+
Sbjct: 122 MAQEIRARIRAEVGITASAGIAPNKFLAKVASDWNKPDGQFVVRPDEVAAFVAALPVKKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+ GK+ + N LGV T GDL ++ L +G + G L + RGI EV+ +
Sbjct: 182 FGV-GKVTAARLNRLGVHTCGDLRPWTLAALTREFG-SFGASLHRLCRGIDEREVKPDRV 239
Query: 311 PKS 313
KS
Sbjct: 240 RKS 242
>gi|78049296|ref|YP_365471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325924733|ref|ZP_08186170.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346726392|ref|YP_004853061.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
gi|123584151|sp|Q3BP42.1|DPO4_XANC5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|78037726|emb|CAJ25471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325544825|gb|EGD16171.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346651139|gb|AEO43763.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
Length = 359
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 150/355 (42%), Gaps = 75/355 (21%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLI--AVGYEARNYGVKRSMR 69
R I HVD+D FY VEQR P LRG P V W+G + A YEAR +G++ +M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPGLRGKPVVVA----WRGARSVVCAASYEARTFGIRSAMP 57
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTD 128
A+ +CP + + VP D + Y+ +V I R E S+DE YLD+T
Sbjct: 58 AVRAERLCP--DAIFVP-----PDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
A M T EV +
Sbjct: 111 AKTGMQLAT------EVAQ----------------------------------------- 123
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
LI T++R +ET+ T SAGIA NK LAK+AS KP Q + S V L L +
Sbjct: 124 -LIRTQIR----EETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVN 178
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ +G + L LG+ TV DL + ++LQ +G + G L+ ARGI V+
Sbjct: 179 RIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFG-SFGQSLYRRARGIDERPVEPD 236
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 363
+S S +F AL L+ L+E+ + +RI T+ L
Sbjct: 237 QEVQSVSSEDTFSEDLALDA-------LDPHILRLAEKTWLATRRTERIGRTVVL 284
>gi|421781859|ref|ZP_16218320.1| DNA polymerase IV [Serratia plymuthica A30]
gi|407755979|gb|EKF66101.1| DNA polymerase IV [Serratia plymuthica A30]
Length = 353
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 131/310 (42%), Gaps = 63/310 (20%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R I HVD+DCF+ VE R P LR +P A+ + + G + Y AR YGV +M
Sbjct: 2 RKIIHVDMDCFFAAVEMRDDPSLRDIPLAIGGSAD-RRGVISTANYPARRYGVHSAMSTA 60
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 130
A ++CP ++L+ +++Y+ A + I AR E S+DE YLD+TD
Sbjct: 61 MALKLCPHLKLL-------PGRMAAYKEASLHIREIFARYTSLIEPLSLDEAYLDVTDCT 113
Query: 131 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 190
+ C+ L
Sbjct: 114 Q--------------------------------------------CNGS--------ATL 121
Query: 191 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 250
I E+R + +E T SAGIA K LAK+AS +NKP Q + + V L LP+ K+
Sbjct: 122 IAQEIRQAIAEELNLTASAGIAPIKFLAKIASELNKPNGQYVITPAQVPAFLQQLPLSKI 181
Query: 251 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 310
+G L+ E+G+ T D+ ++ L + +G G LW +GI EV L
Sbjct: 182 PGVGKVTAKRLE-EVGLITCADVQQYDLALLLKRFG-KFGRVLWERCQGIDLREVSPERL 239
Query: 311 PKSHGSGKSF 320
KS G ++
Sbjct: 240 RKSVGVERTL 249
>gi|375362921|ref|YP_005130960.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|371568915|emb|CCF05765.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 422
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 128/296 (43%), Gaps = 63/296 (21%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRG 70
RII H+D++ FY VE P LRG P AV + + G ++ YEAR GVK +M
Sbjct: 13 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 72
Query: 71 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA 129
AK +CP EL+ VP + YR++ E+ SIL E SIDE Y+D+TD
Sbjct: 73 WRAKRLCP--ELIVVP-----PNFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITD- 124
Query: 130 AEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGV 189
TP HR +
Sbjct: 125 -------TP-----------------------------------------HRHRAYETAA 136
Query: 190 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 249
I L+ ++L S GIA NK LAK+AS M KP T + + +L LPI++
Sbjct: 137 DIQARLKKELL----LPSSIGIAPNKFLAKMASDMKKPLGITILRKRELPDVLWPLPIEE 192
Query: 250 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 305
M +G K ++ LG+ T+GDL K E L+ G N G L + A GI EV
Sbjct: 193 MHGIGTKTAEKIKT-LGIKTIGDLAKGDEHALKTLLGIN-GPRLKDKANGIHPAEV 246
>gi|257879319|ref|ZP_05658972.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881865|ref|ZP_05661518.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890145|ref|ZP_05669798.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893473|ref|ZP_05673126.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558761|ref|ZP_05830950.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207356|ref|ZP_05922043.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566863|ref|ZP_06447272.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|293559579|ref|ZP_06676113.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|293567574|ref|ZP_06678918.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|294615737|ref|ZP_06695587.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|294617662|ref|ZP_06697289.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|314937919|ref|ZP_07845235.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|314941410|ref|ZP_07848303.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|314948535|ref|ZP_07851915.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|314951290|ref|ZP_07854344.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|314992879|ref|ZP_07858280.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|314998083|ref|ZP_07862971.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|383328038|ref|YP_005353922.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|389867928|ref|YP_006375351.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|415894551|ref|ZP_11550362.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|416141894|ref|ZP_11599495.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|424790843|ref|ZP_18217351.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|424812972|ref|ZP_18238210.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|424827112|ref|ZP_18251927.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|424862493|ref|ZP_18286434.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|424901209|ref|ZP_18324746.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|424951499|ref|ZP_18366589.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|424952391|ref|ZP_18367416.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|424956586|ref|ZP_18371357.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|424961921|ref|ZP_18376320.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|424964118|ref|ZP_18378259.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|424968420|ref|ZP_18382044.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|424969912|ref|ZP_18383457.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|424973275|ref|ZP_18386563.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|424978170|ref|ZP_18391116.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|424982026|ref|ZP_18394709.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|424984626|ref|ZP_18397153.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|424986313|ref|ZP_18398740.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|424990169|ref|ZP_18402393.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|424994773|ref|ZP_18406698.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|424999062|ref|ZP_18410709.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|425005449|ref|ZP_18416691.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|425007823|ref|ZP_18418938.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|425009707|ref|ZP_18420701.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|425014480|ref|ZP_18425154.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|425019387|ref|ZP_18429755.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|425019621|ref|ZP_18429969.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|425023820|ref|ZP_18433915.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|425031184|ref|ZP_18436327.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|425036572|ref|ZP_18441314.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|425039062|ref|ZP_18443629.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|425043158|ref|ZP_18447421.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|425045520|ref|ZP_18449619.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|425048658|ref|ZP_18452549.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|425051519|ref|ZP_18455183.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|425061120|ref|ZP_18464385.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|427395461|ref|ZP_18888383.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430831485|ref|ZP_19449536.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430862315|ref|ZP_19479632.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430867327|ref|ZP_19482321.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430963227|ref|ZP_19487519.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|431011146|ref|ZP_19489890.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|431290485|ref|ZP_19506620.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|431747928|ref|ZP_19536692.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|431754045|ref|ZP_19542710.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|431768728|ref|ZP_19557161.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|431770023|ref|ZP_19558426.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|431774449|ref|ZP_19562757.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|431776996|ref|ZP_19565253.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|431781303|ref|ZP_19569451.1| DNA polymerase IV [Enterococcus faecium E6012]
gi|431784934|ref|ZP_19572969.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|257813547|gb|EEV42305.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817523|gb|EEV44851.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826505|gb|EEV53131.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829852|gb|EEV56459.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075220|gb|EEW63533.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078416|gb|EEW66120.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161351|gb|EFD09242.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|291589675|gb|EFF21479.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|291591388|gb|EFF23047.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|291596069|gb|EFF27335.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|291606455|gb|EFF35855.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|313587925|gb|EFR66770.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|313592683|gb|EFR71528.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|313596507|gb|EFR75352.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|313599833|gb|EFR78676.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|313642777|gb|EFS07357.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|313645032|gb|EFS09612.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|364089914|gb|EHM32556.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|364092131|gb|EHM34531.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|378937732|gb|AFC62804.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|388533177|gb|AFK58369.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|402916579|gb|EJX37434.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|402920398|gb|EJX40916.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|402923556|gb|EJX43839.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|402925523|gb|EJX45657.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|402929819|gb|EJX49540.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|402931190|gb|EJX50781.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|402941404|gb|EJX60134.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|402942144|gb|EJX60773.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|402945696|gb|EJX64030.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|402947532|gb|EJX65740.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|402952036|gb|EJX69896.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|402958911|gb|EJX76192.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|402961782|gb|EJX78777.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|402962996|gb|EJX79896.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|402963083|gb|EJX79977.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|402968385|gb|EJX84868.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|402976878|gb|EJX92731.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|402979166|gb|EJX94849.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|402980164|gb|EJX95791.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|402980893|gb|EJX96463.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|402985999|gb|EJY01151.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|402994248|gb|EJY08791.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|402998300|gb|EJY12563.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|402998547|gb|EJY12796.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|403001961|gb|EJY15974.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|403008428|gb|EJY21932.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|403011172|gb|EJY24501.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|403014113|gb|EJY27131.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|403016353|gb|EJY29177.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|403017456|gb|EJY30199.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|403020988|gb|EJY33472.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|403026817|gb|EJY38752.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|403029973|gb|EJY41693.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|403037479|gb|EJY48751.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|403042057|gb|EJY53033.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|425723961|gb|EKU86847.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430481368|gb|ELA58524.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430548893|gb|ELA88740.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430550338|gb|ELA90134.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430555652|gb|ELA95189.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|430560168|gb|ELA99474.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|430582585|gb|ELB21007.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|430614804|gb|ELB51775.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|430619968|gb|ELB56771.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|430628596|gb|ELB65030.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|430634198|gb|ELB70333.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|430635776|gb|ELB71855.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|430639937|gb|ELB75791.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|430648490|gb|ELB83896.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|430649664|gb|ELB85032.1| DNA polymerase IV [Enterococcus faecium E6012]
Length = 373
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 13 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 72
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 73 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 125
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 126 E--------------------------------NKINCKSAIK----------------- 136
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 137 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 193
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 194 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 251
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 252 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|83745844|ref|ZP_00942901.1| DNA polymerase IV [Ralstonia solanacearum UW551]
gi|83727534|gb|EAP74655.1| DNA polymerase IV [Ralstonia solanacearum UW551]
Length = 362
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 150/339 (44%), Gaps = 65/339 (19%)
Query: 10 GARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMR 69
R I H D DCFY +E R P+L G P AV E +G + YEAR +G+ +M
Sbjct: 5 AVRKIIHCDCDCFYAAIEMRDDPRLVGWPLAVGGRPEQRGV-VATCNYEARKFGIHSAMP 63
Query: 70 GDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTD 128
+A + CP +LV +P A + YR ++ +I + E S+DE YLD+TD
Sbjct: 64 MAQAVKRCP--DLVILPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
Query: 129 AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACG 188
+ MLA + G
Sbjct: 117 ST--MLAGS--------------------------------------------------G 124
Query: 189 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 248
I ++R +V +E T SAG+A NK +AK+AS NKP V V + +LP++
Sbjct: 125 TRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVE 184
Query: 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308
++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI VQ
Sbjct: 185 RLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHRPVQPS 242
Query: 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
+ KS +++ L+T+ + L L ++L+ R+
Sbjct: 243 QIRKSVSVEETYATD--LRTLDDCRRELTVLVDQLAARV 279
>gi|449015370|dbj|BAM78772.1| DNA polymerase iota, RAD30 [Cyanidioschyzon merolae strain 10D]
Length = 658
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 148/338 (43%), Gaps = 42/338 (12%)
Query: 10 GARIIAHVDLDCFYVQVEQRK--QPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
+R++A D D FY QVE LR P AV Q + ++ YEAR YGV +
Sbjct: 6 ASRVVAVFDADYFYCQVELNAVGDESLRSKPAAVFQKHL-----VVTCNYEARKYGVGKL 60
Query: 68 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL----------ARKGRCERA 117
MR DEAK +CP++ L DL+ YR+A + L R+ RCE
Sbjct: 61 MRVDEAKRLCPELVLF------CGEDLTPYRDAQERICEALEEKLRSLDEVGREHRCETV 114
Query: 118 SIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD 177
+DE DLT + L E + L ++ + +D +++ +C
Sbjct: 115 GLDEYIFDLTAVVDRRLRSMNAEC---AQKGPLNEYVGAVFPRDFMPE--SLQPDICLVG 169
Query: 178 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT-VPFS 236
+ +L A G I +R + T T S G+ NKMLAK A+ M+KP QTT VP
Sbjct: 170 PEEELRL-ALGSDIAKNMRDAAFERTGITISCGVGFNKMLAKFAANMHKPNGQTTFVPTV 228
Query: 237 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL-LKFS-----EDKLQESYGFNTG 290
L L ++ + +G + L EL V TV +L +F E +++++G
Sbjct: 229 RADSWLSELELRSLPYVGRRFERLLSEELHVRTVKELRTRFDSPLTLEHAIRKTFGKFAA 288
Query: 291 TW------LWNIARGISGEEVQARLLPKSHGSGKSFPG 322
+ +W ARG EEV +R + SFPG
Sbjct: 289 VFAKRARDIWLAARGDFPEEVYSRGPLQRIHVEDSFPG 326
>gi|257885067|ref|ZP_05664720.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|257820919|gb|EEV48053.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
Length = 373
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGG-GLIAVG-YEARNYGVKRSM 68
+R I H+D+D F+ VE+R P+ RG P + ++ GG G++ YEAR +G+ +M
Sbjct: 13 SRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEARKFGIHSAM 72
Query: 69 RGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 127
+A E+CPQ D Y + +V + R E SIDE YLD+T
Sbjct: 73 SAQKAYELCPQ-------AIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVT 125
Query: 128 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 187
+ + + K+ +K
Sbjct: 126 E--------------------------------NKINCKSAIK----------------- 136
Query: 188 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 247
I ++ + + + TCSAG+++NK LAKLAS KP T V L +LPI
Sbjct: 137 ---IARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPI 193
Query: 248 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 307
+K +G K + +ELG+ T DL + +E L ++G G L+ RGI V
Sbjct: 194 EKFHGVGKKTVPRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNV 251
Query: 308 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 347
KS G ++ P L+T +V L QL E++ E L
Sbjct: 252 TRERKSVGKEHTYGQP--LQTEEAVLTQLRQLAEKVEEAL 289
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,487,135,195
Number of Sequences: 23463169
Number of extensions: 484334442
Number of successful extensions: 1098662
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4039
Number of HSP's successfully gapped in prelim test: 2555
Number of HSP's that attempted gapping in prelim test: 1073369
Number of HSP's gapped (non-prelim): 16053
length of query: 729
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 579
effective length of database: 8,839,720,017
effective search space: 5118197889843
effective search space used: 5118197889843
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 81 (35.8 bits)